1290 84 6 0 chr6 4 182 -189279372 + MER4E LTR ERV1 588 766 0 2113 141 33 25 chr6 197 558 -189278996 - THE1B LTR MaLR 0 364 1 1564 260 101 24 chr6 867 1629 -189277925 + HAL1 LINE L1 1681 2501 -6 185 273 171 23 chr6 3283 3371 -189276183 + L2 LINE L2 3166 3266 -6 2355 99 0 10 chr6 4049 4361 -189275193 - AluSc SINE Alu 0 309 1 3022 208 118 84 chr6 4892 6055 -189273499 + L1M4 LINE L1 830 2064 -4580 1100 79 22 11 chr6 6055 6233 -189273321 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3022 208 118 84 chr6 6233 7045 -189272509 + L1M4 LINE L1 2064 2847 -3797 3186 88 31 2 chr6 7305 7758 -189271796 - L1PA10 LINE L1 -5 6163 5698 393 95 0 0 chr6 7823 7886 -189271668 + (TA)n Simple_repeat Simple_repeat 2 64 0 2205 140 88 25 chr6 7888 8296 -189271258 + Tigger2a DNA MER2_type 1 434 0 465 283 82 22 chr6 9127 9311 -189270243 + L2 LINE L2 3118 3312 -1 1016 283 134 27 chr6 10661 10935 -189268619 - L2 LINE L2 -1 3312 3069 6673 38 48 0 chr6 10935 11769 -189267785 + L1PA5 LINE L1 5273 6146 -8 1016 283 134 27 chr6 11769 12221 -189267333 - L2 LINE L2 -244 3069 2533 905 275 94 54 chr6 12505 13080 -189266474 - L1M4 LINE L1 -2580 3566 2969 1947 200 70 8 chr6 13082 13551 -189266003 - Tigger5 DNA MER2_type 0 2323 1826 962 218 18 65 chr6 13542 13677 -189265877 - Tigger5 DNA MER2_type -200 218 97 * 2281 79 3 7 chr6 13677 13969 -189265585 - AluSc SINE Alu -14 295 5 962 218 18 65 chr6 13969 14062 -189265492 - Tigger5 DNA MER2_type -321 97 1 3173 204 8 3 chr6 14139 14920 -189264634 - L1P LINE L1 -843 5308 4523 656 310 51 66 chr6 14918 15873 -189263681 - L1PA12 LINE L1 -5691 1890 950 * 1516 222 23 21 chr6 15878 16311 -189263243 - L1M4 LINE L1 -3552 2594 2161 22 0 0 0 chr6 16314 16336 -189263218 + AT_rich Low_complexity Low_complexity 1 22 0 821 197 0 0 chr6 16341 16483 -189263071 - FLAM_C SINE Alu -1 142 1 245 77 19 58 chr6 16485 16537 -189263017 - L1M2 LINE L1 -3971 2878 2829 * 376 254 51 30 chr6 16533 16828 -189262726 - L1MC5 LINE L1 -315 7882 7582 21 57 0 0 chr6 17331 17366 -189262188 + AT_rich Low_complexity Low_complexity 1 35 0 769 229 139 28 chr6 17382 17569 -189261985 - L1MC5 LINE L1 -1866 6178 6013 2250 129 0 0 chr6 17569 17879 -189261675 - AluSx SINE Alu -2 310 1 769 229 139 28 chr6 17879 18079 -189261475 - L1MC5 LINE L1 -2031 6013 5748 * 14510 28 0 0 chr6 18074 19874 -189259680 - L1PA3 LINE L1 -1036 5110 3311 7632 26 2 0 chr6 19876 20924 -189258630 + L1PA3 LINE L1 5105 6155 0 399 224 32 45 chr6 20929 21085 -189258469 - L1MC5 LINE L1 -2283 5761 5608 3720 178 6 1 chr6 21094 21763 -189257791 + L1PA16 LINE L1 5491 6162 -4 2783 62 11 0 chr6 21874 22246 -189257308 - L1PA7 LINE L1 -364 5790 5415 2671 67 15 0 chr6 22246 22587 -189256967 + L1PA7 LINE L1 5805 6150 -4 235 167 45 0 chr6 22613 22679 -189256875 + L1MCa LINE L1 1995 2063 -4363 229 192 0 0 chr6 22637 22689 -189256865 - L1MC4 LINE L1 -1339 6703 6652 * 7177 228 115 35 chr6 23348 24382 -189255172 - L1MC5 LINE L1 -805 5577 4627 189 0 0 0 chr6 24382 24403 -189255151 + (TG)n Simple_repeat Simple_repeat 2 22 0 7177 228 115 35 chr6 24403 24518 -189255036 - L1MC5 LINE L1 -1755 4627 4523 315 215 13 0 chr6 24518 24597 -189254957 + MLT1A2 LTR MaLR 1 80 -294 7177 228 115 35 chr6 24597 25076 -189254478 - L1MC5 LINE L1 -1859 4523 4084 243 0 0 0 chr6 25076 25103 -189254451 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7177 228 115 35 chr6 25103 25155 -189254399 - L1MC5 LINE L1 -2298 4084 4038 2177 92 0 0 chr6 25155 25428 -189254126 - AluSx SINE Alu 0 312 40 7177 228 115 35 chr6 25428 27236 -189252318 - L1MC5 LINE L1 -2344 4038 1716 1175 129 119 61 chr6 27236 27546 -189252008 - L1MC5 LINE L1 -5052 1332 1005 223 146 42 0 chr6 27546 27594 -189251960 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 53 0 0 chr6 27717 27755 -189251799 + AT_rich Low_complexity Low_complexity 1 38 0 778 193 0 0 chr6 27755 27895 -189251659 - L1MC5 LINE L1 -5709 675 536 627 215 0 20 chr6 27902 28051 -189251503 - L1MC5 LINE L1 -6217 167 22 186 103 0 0 chr6 28250 28279 -189251275 + (G)n Simple_repeat Simple_repeat 1 29 0 3302 240 41 14 chr6 28453 29498 -189250056 - L1M4 LINE L1 -1480 4666 3594 326 134 149 0 chr6 29496 29563 -189249991 + L1MB4 LINE L1 5807 5883 -297 * 361 213 64 0 chr6 29576 29670 -189249884 - L1M4 LINE L1 -2553 3593 3494 1604 161 85 55 chr6 29706 29737 -189249817 - L1MB4 LINE L1 -21 6159 6130 2422 93 0 0 chr6 29737 30038 -189249516 - AluSx SINE Alu -11 301 1 1604 161 85 55 chr6 30038 30428 -189249126 - L1MB4 LINE L1 -50 6130 5725 362 186 41 21 chr6 30491 30588 -189248966 - L1MCc LINE L1 -5142 1281 1183 1054 229 92 19 chr6 30595 31019 -189248535 - L1MCc LINE L1 -5184 1239 785 716 160 80 0 chr6 31036 31211 -189248343 - MER53 DNA DNA 0 189 1 446 294 73 29 chr6 31721 31993 -189247561 - L1MCc LINE L1 -6086 337 54 827 180 77 0 chr6 32681 32875 -189246679 - MLT1B LTR MaLR -81 309 101 2520 81 0 0 chr6 32963 33270 -189246284 - AluY SINE Alu -4 307 1 230 323 115 54 chr6 33622 34256 -189245298 + L2 LINE L2 2305 2977 -337 343 267 200 13 chr6 34311 34461 -189245093 + MIR SINE MIR 29 206 -56 225 269 0 0 chr6 34488 34540 -189245014 - MIR SINE MIR -25 237 186 212 343 30 20 chr6 34518 34617 -189244937 + L2 LINE L2 2979 3078 -194 * 1264 174 72 33 chr6 34846 35179 -189244375 - MLT1B LTR MaLR -31 359 3 390 210 12 0 chr6 36964 37045 -189242509 + L2 LINE L2 3190 3271 -1 463 247 0 0 chr6 37716 37809 -189241745 + MER81 DNA DNA 2 94 -20 2144 125 0 3 chr6 38933 39230 -189240324 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr6 39376 39405 -189240149 + AT_rich Low_complexity Low_complexity 1 29 0 300 20 61 0 chr6 40636 40685 -189238869 + (TC)n Simple_repeat Simple_repeat 2 53 0 255 243 135 36 chr6 40900 41011 -189238543 - L2 LINE L2 -10 3262 3141 763 225 31 0 chr6 41785 41945 -189237609 + MER20 DNA MER1_type 55 219 0 2302 88 0 0 chr6 42609 42904 -189236650 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 42910 42932 -189236622 + AT_rich Low_complexity Low_complexity 1 22 0 230 341 40 74 chr6 43315 43491 -189236063 - MIR3 SINE MIR -26 182 13 479 323 183 34 chr6 43843 44286 -189235268 - L2 LINE L2 0 3313 2805 308 232 158 0 chr6 44281 44376 -189235178 - L2 LINE L2 0 3313 3204 * 423 299 176 25 chr6 47183 47507 -189232047 - L1ME4a LINE L1 -5 6116 5744 307 351 114 8 chr6 47564 47695 -189231859 - L2 LINE L2 -28 3244 3100 198 50 75 0 chr6 47844 47884 -189231670 + CT-rich Low_complexity Low_complexity 5 47 0 359 270 81 0 chr6 49096 49207 -189230347 + MER34B LTR ERV1 5 124 -441 387 283 23 45 chr6 49304 49569 -189229985 + MER34B LTR ERV1 304 562 -3 338 222 36 82 chr6 49631 49825 -189229729 + MER34B-int LTR ERV1 69 253 -6078 340 191 43 21 chr6 50170 50264 -189229290 + MER34B-int LTR ERV1 1299 1394 -4937 3057 139 33 4 chr6 50359 50878 -189228676 - MSTA-int LTR MaLR -1117 534 1 2549 150 26 5 chr6 50878 51297 -189228257 - MSTA LTR MaLR 0 428 1 7918 187 52 43 chr6 51297 53297 -189226257 + MER34B-int LTR ERV1 4314 6331 0 261 193 174 73 chr6 53301 53410 -189226144 + MER34B LTR ERV1 5 124 -441 22 35 0 0 chr6 56463 56492 -189223062 + AT_rich Low_complexity Low_complexity 1 29 0 206 225 0 0 chr6 56587 56627 -189222927 + L2 LINE L2 3229 3268 -4 1101 133 0 44 chr6 57960 58141 -189221413 + AluSg/x SINE Alu 140 312 0 23 0 0 0 chr6 59002 59025 -189220529 + AT_rich Low_complexity Low_complexity 1 23 0 2454 90 0 0 chr6 59197 59498 -189220056 - AluSg SINE Alu -9 301 1 183 80 0 0 chr6 59971 59996 -189219558 + (CCCTAA)n Simple_repeat Simple_repeat 5 29 0 2025 128 0 7 chr6 62726 63007 -189216547 - AluSx SINE Alu -33 279 1 350 305 32 7 chr6 64458 64612 -189214942 - MER103 DNA DNA -1 165 8 539 245 111 67 chr6 64901 64938 -189214616 + L1ME4a LINE L1 5852 5886 -235 225 0 0 0 chr6 64938 64963 -189214591 + (TG)n Simple_repeat Simple_repeat 2 26 0 539 245 111 67 chr6 64963 65178 -189214376 + L1ME4a LINE L1 5886 6115 -6 24 53 0 0 chr6 66235 66273 -189213281 + AT_rich Low_complexity Low_complexity 1 38 0 291 297 145 22 chr6 67157 67295 -189212259 - MIR3 SINE MIR -28 180 26 432 329 7 7 chr6 70136 70273 -189209281 + MER5A DNA MER1_type 44 180 -9 1322 169 99 51 chr6 70922 71195 -189208359 - AluJo SINE Alu -20 292 7 224 293 12 49 chr6 71732 71896 -189207658 + GA-rich Low_complexity Low_complexity 1 158 0 21 36 0 0 chr6 72195 72223 -189207331 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 72281 72302 -189207252 + GC_rich Low_complexity Low_complexity 1 21 0 3737 155 22 10 chr6 73774 74466 -189205088 - L1MB3 LINE L1 -1 6182 5483 358 331 25 13 chr6 74641 74798 -189204756 - MIR SINE MIR -102 160 2 352 299 80 7 chr6 75047 75184 -189204370 - MIR SINE MIR -45 217 71 324 274 202 0 chr6 75242 75366 -189204188 + MIR SINE MIR 106 254 -8 1159 199 50 66 chr6 75371 75733 -189203821 - MLT1A2 LTR MaLR 0 374 19 28 29 0 0 chr6 75857 75892 -189203662 + AT_rich Low_complexity Low_complexity 1 35 0 2105 145 0 0 chr6 75991 76281 -189203273 - AluSx SINE Alu -22 290 1 22 35 0 0 chr6 76376 76405 -189203149 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr6 77156 77183 -189202371 + (T)n Simple_repeat Simple_repeat 1 27 0 7894 146 98 28 chr6 78847 80434 -189199120 - pTR5 LTR ERV1 0 2438 741 963 236 106 7 chr6 80683 80967 -189198587 - MER63 DNA MER1_type -74 986 675 247 328 74 16 chr6 82942 83064 -189196490 - L3 LINE CR1 -467 1110 982 702 223 37 115 chr6 83901 84257 -189195297 - MER33 DNA MER1_type -6 318 1 203 331 70 21 chr6 84274 84416 -189195138 + MIR SINE MIR 43 191 -71 462 178 0 40 chr6 84722 84823 -189194731 + L1MC2 LINE L1 6248 6344 0 480 241 14 148 chr6 84828 85044 -189194510 - MER91B DNA MER1_type -2 188 2 1085 143 26 0 chr6 86151 86340 -189193214 - L1PA16 LINE L1 -9 6157 5964 1223 231 21 37 chr6 86572 87087 -189192467 + L1ME1 LINE L1 5327 5997 -169 1994 126 7 37 chr6 87200 87521 -189192033 + AluSx SINE Alu 1 312 0 4190 142 80 40 chr6 88454 89772 -189189782 - pTR5 LTR ERV1 0 2438 743 232 241 215 0 chr6 90923 91002 -189188552 + MARNA DNA Mariner 295 390 -196 2714 178 21 55 chr6 91104 91727 -189187827 - L1MB3 LINE L1 -20 6163 5562 483 261 112 2 chr6 92269 92436 -189187118 - MIR SINE MIR -51 157 17 221 215 0 13 chr6 93948 94027 -189185527 + CT-rich Low_complexity Low_complexity 2 79 0 * 601 151 30 0 chr6 94008 94174 -189185380 + (CATCC)n Simple_repeat Simple_repeat 2 172 0 475 158 39 0 chr6 94207 94334 -189185220 + (CATCC)n Simple_repeat Simple_repeat 4 135 0 812 114 25 0 chr6 94361 94519 -189185035 + (CATCC)n Simple_repeat Simple_repeat 5 166 0 461 154 9 0 chr6 94535 94645 -189184909 + (CATCC)n Simple_repeat Simple_repeat 3 113 0 267 315 23 39 chr6 94779 94909 -189184645 + MLT1I LTR MaLR 59 186 -223 2173 109 3 3 chr6 96399 96701 -189182853 - AluSx SINE Alu -10 302 1 1419 130 0 0 chr6 97994 98219 -189181335 + AluSg/x SINE Alu 91 315 0 218 302 190 9 chr6 98352 98468 -189181086 + MIR SINE MIR 59 195 -67 1536 191 34 49 chr6 101884 101940 -189177614 + MLT1B LTR MaLR 1 56 -334 2109 121 119 16 chr6 101940 102327 -189177227 + MSTC LTR MaLR 1 427 -1 1536 191 34 49 chr6 102327 102658 -189176896 + MLT1B LTR MaLR 56 382 -8 195 250 96 0 chr6 102695 102747 -189176807 - MIR3 SINE MIR -34 174 118 309 284 11 11 chr6 103138 103233 -189176321 - L2 LINE L2 -769 2545 2451 5451 128 25 22 chr6 103481 104670 -189174884 + pTR5 LTR ERV1 743 2088 -350 258 275 126 62 chr6 105622 105978 -189173576 - MLT1J2 LTR MaLR -19 431 53 2291 114 0 6 chr6 106944 107259 -189172295 + AluSq SINE Alu 1 313 0 309 244 52 44 chr6 107472 107607 -189171947 - L1ME4a LINE L1 -31 6090 5955 353 311 156 24 chr6 107656 107868 -189171686 - L1ME4a LINE L1 -252 5869 5630 200 327 100 0 chr6 109371 109481 -189170073 + L2 LINE L2 3190 3310 -3 500 354 48 9 chr6 109487 109716 -189169838 + L3 LINE CR1 1240 1477 -100 3988 144 36 14 chr6 109765 110537 -189169017 + L1MA9 LINE L1 5521 6309 -3 1772 263 121 24 chr6 110615 111645 -189167909 + L1MCc LINE L1 814 1983 -4958 217 49 0 49 chr6 111645 111686 -189167868 + (CA)n Simple_repeat Simple_repeat 2 40 0 1772 263 121 24 chr6 111686 111816 -189167738 + L1MCc LINE L1 1983 2099 -4842 665 218 8 0 chr6 111828 111961 -189167593 + Tigger7 DNA MER2_type 37 170 -2317 612 156 88 47 chr6 111966 112128 -189167426 + Tigger7 DNA MER2_type 2209 2382 -105 1044 215 102 93 chr6 112128 112589 -189166965 + MER4C LTR ERV1 1 465 0 612 156 88 47 chr6 112589 112618 -189166936 + Tigger7 DNA MER2_type 2382 2408 -79 331 296 37 0 chr6 112691 112799 -189166755 + Tigger7 DNA MER2_type 2370 2481 -6 312 307 57 45 chr6 112804 113068 -189166486 + L1MCc LINE L1 2297 2563 -4559 5978 88 20 18 chr6 113073 114172 -189165382 + L1PA8 LINE L1 5061 6168 -4 297 248 116 33 chr6 114176 114297 -189165257 + L1MCc LINE L1 2609 2739 -4383 2402 148 27 0 chr6 114297 114708 -189164846 + MSTA LTR MaLR 5 426 -2 6704 166 18 3 chr6 114708 115852 -189163702 + MSTA-int LTR MaLR 1 1161 -490 2273 177 55 39 chr6 115878 116184 -189163370 + MER6 DNA MER2_type 60 378 -487 2329 86 7 7 chr6 116184 116488 -189163066 + AluSc SINE Alu 5 308 -1 2273 177 55 39 chr6 116488 116673 -189162881 + MER6 DNA MER2_type 378 559 -306 1736 144 37 3 chr6 116864 117163 -189162391 + MER6 DNA MER2_type 557 865 0 3837 235 69 21 chr6 117164 118423 -189161131 + L1MCc LINE L1 3397 4716 -2225 265 284 196 0 chr6 119763 119865 -189159689 - MIR SINE MIR -54 208 87 439 226 29 80 chr6 120637 120774 -189158780 - pTR5 LTR ERV1 -2045 393 264 201 188 47 16 chr6 121272 121336 -189158218 + (CTGGGG)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr6 121358 121380 -189158174 + GC_rich Low_complexity Low_complexity 1 22 0 1810 81 146 0 chr6 122109 122370 -189157184 + AluSx SINE Alu 1 299 -13 472 262 25 8 chr6 122881 123003 -189156551 - L2 LINE L2 0 3313 3190 248 298 155 25 chr6 124182 124343 -189155211 + MIR SINE MIR 80 261 -1 315 312 28 0 chr6 125884 125993 -189153561 - MLT1I LTR MaLR -174 235 124 1737 239 73 14 chr6 126245 126763 -189152791 + MER44D DNA MER2_type 1 604 -1 687 343 92 13 chr6 127039 127418 -189152136 - LTR16A LTR ERVL -25 425 17 786 127 19 38 chr6 127524 127682 -189151872 + MER53 DNA DNA 1 155 -34 635 281 22 17 chr6 128297 128528 -189151026 - HERV16 LTR ERVL -3883 1113 882 208 351 35 9 chr6 134220 134334 -189145220 + L2 LINE L2 3197 3313 0 468 301 127 9 chr6 134460 134673 -189144881 + L1ME4a LINE L1 5688 5925 -196 1846 111 53 4 chr6 135027 135289 -189144265 - AluSg SINE Alu -2 308 34 3640 171 56 8 chr6 136173 136910 -189142644 - L1MA8 LINE L1 -6 6285 5514 2484 82 0 22 chr6 137279 137595 -189141959 - AluSc SINE Alu 0 309 1 2200 254 89 7 chr6 137688 138386 -189141168 - L1MC4a LINE L1 -307 7501 6747 194 270 0 32 chr6 139746 139809 -189139745 - L2 LINE L2 -20 3293 3233 327 264 72 1 chr6 139850 140023 -189139531 - L1MC3 LINE L1 -759 7026 6808 291 256 128 0 chr6 140345 140431 -189139123 + MIR SINE MIR 166 262 0 452 243 3 5 chr6 140431 141043 -189138511 + (CTG)n Simple_repeat Simple_repeat 1 611 0 495 235 0 0 chr6 141068 141349 -189138205 + (CTG)n Simple_repeat Simple_repeat 1 281 0 504 232 0 0 chr6 141361 141538 -189138016 + (CTG)n Simple_repeat Simple_repeat 2 178 0 462 245 0 0 chr6 141553 141847 -189137707 + (CTG)n Simple_repeat Simple_repeat 1 294 0 459 237 0 0 chr6 141862 142039 -189137515 + (CTG)n Simple_repeat Simple_repeat 2 178 0 471 248 0 0 chr6 142054 142381 -189137173 + (CTG)n Simple_repeat Simple_repeat 1 327 0 507 233 0 0 chr6 142396 142656 -189136898 + (CTG)n Simple_repeat Simple_repeat 1 260 0 456 237 0 0 chr6 142670 142843 -189136711 + (CTG)n Simple_repeat Simple_repeat 2 174 0 326 287 11 0 chr6 142844 142938 -189136616 + (CTA)n Simple_repeat Simple_repeat 2 96 0 317 316 105 26 chr6 143611 143877 -189135677 + Charlie7 DNA MER1_type 400 686 -1926 835 181 18 0 chr6 144499 144670 -189134884 - L1MA8 LINE L1 -69 6222 6049 272 141 99 14 chr6 144666 144737 -189134817 + L1MA8 LINE L1 6209 6285 -6 * 2123 117 0 0 chr6 144999 145289 -189134265 + AluSc SINE Alu 1 290 -19 416 259 43 9 chr6 146007 146123 -189133431 + MIR SINE MIR 32 151 -111 214 246 17 39 chr6 146225 146404 -189133150 + (TATG)n Simple_repeat Simple_repeat 4 178 0 426 338 12 12 chr6 146450 146610 -189132944 + (TG)n Simple_repeat Simple_repeat 1 160 0 728 200 92 0 chr6 147739 147934 -189131620 - MER20 DNA MER1_type -6 213 1 1131 231 60 36 chr6 147995 148312 -189131242 + L1MB7 LINE L1 5812 6141 -43 1929 91 4 0 chr6 148312 148554 -189131000 - AluSp SINE Alu -10 303 61 1131 231 60 36 chr6 148554 148600 -189130954 + L1MB7 LINE L1 6141 6184 0 315 0 0 0 chr6 149091 149126 -189130428 + (A)n Simple_repeat Simple_repeat 1 35 0 347 325 162 0 chr6 155988 156179 -189123375 + MIR SINE MIR 33 254 -8 2291 109 0 3 chr6 157246 157549 -189122005 - AluSq SINE Alu -11 302 1 2042 146 0 0 chr6 158732 159012 -189120542 + AluSx SINE Alu 1 280 -32 1736 142 110 23 chr6 160385 160695 -189118859 - MER1B DNA MER1_type 0 337 1 472 298 7 0 chr6 164557 164708 -189114846 + (CA)n Simple_repeat Simple_repeat 1 152 0 231 287 20 31 chr6 166652 166771 -189112783 - MER5B DNA MER1_type -1 177 71 219 304 0 0 chr6 167340 167409 -189112145 - MIR SINE MIR 0 262 194 315 0 0 0 chr6 167447 167482 -189112072 + (TG)n Simple_repeat Simple_repeat 2 36 0 996 155 23 76 chr6 168159 168402 -189111152 - L1MA6 LINE L1 0 6300 6071 2140 96 45 3 chr6 168402 168694 -189110860 + AluSx SINE Alu 1 304 -8 996 155 23 76 chr6 168694 168714 -189110840 - L1MA6 LINE L1 -229 6071 6051 197 319 14 14 chr6 169166 169238 -189110316 + MIR SINE MIR 43 114 -94 1799 179 3 16 chr6 169321 169629 -189109925 + AluJb SINE Alu 1 304 -8 267 306 0 0 chr6 170197 170269 -189109285 + (CA)n Simple_repeat Simple_repeat 1 72 0 226 267 163 0 chr6 170617 170703 -189108851 + Charlie8 DNA MER1_type 4 103 -2314 242 279 163 0 chr6 171324 171410 -189108144 - Charlie8 DNA MER1_type -2314 103 4 238 220 250 20 chr6 174543 174643 -189104911 - MIR SINE MIR -50 212 90 775 188 7 0 chr6 176126 176270 -189103284 + L1PB4 LINE L1 6000 6144 -12 208 229 84 48 chr6 176612 176695 -189102859 - MIR SINE MIR -120 142 57 1276 216 25 9 chr6 178088 178403 -189101151 + MER33 DNA MER1_type 5 324 0 231 302 54 20 chr6 180224 180373 -189099181 + LTR67 LTR ERVL 400 553 -4 194 222 0 22 chr6 181759 181804 -189097750 + L2 LINE L2 3223 3266 -6 1157 155 52 44 chr6 182196 182230 -189097324 - L1MB3 LINE L1 -9 6174 6142 2278 99 7 3 chr6 182230 182522 -189097032 + AluSg SINE Alu 1 293 -17 1157 155 52 44 chr6 182522 182739 -189096815 - L1MB3 LINE L1 -41 6142 5921 253 314 108 0 chr6 184890 184992 -189094562 + MER58B DNA MER1_type 189 301 -40 209 217 14 72 chr6 185241 185310 -189094244 + MIR SINE MIR 191 255 -7 300 53 0 0 chr6 188781 188819 -189090735 + (CA)n Simple_repeat Simple_repeat 2 39 0 279 221 53 18 chr6 189878 189991 -189089563 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 261 279 15 0 chr6 189999 190067 -189089487 + L2 LINE L2 2221 2289 -1025 505 292 64 52 chr6 190242 190475 -189089079 - L1M4 LINE L1 -3659 2487 2252 226 368 78 32 chr6 190480 190763 -189088791 + L2 LINE L2 2524 2819 -495 212 250 0 0 chr6 191123 191167 -189088387 + L2 LINE L2 3262 3305 -8 21 0 0 0 chr6 192893 192914 -189086640 + AT_rich Low_complexity Low_complexity 1 21 0 449 324 48 2 chr6 193072 193323 -189086231 - L1MC4a LINE L1 -304 5817 5664 182 274 0 0 chr6 195807 195858 -189083696 + MIR SINE MIR 31 81 -181 208 246 101 14 chr6 196215 196284 -189083270 + L2 LINE L2 3235 3309 -4 369 319 9 9 chr6 196406 196522 -189083032 + L1ME4a LINE L1 5493 5608 -513 196 352 63 13 chr6 196581 196740 -189082814 + MIR3 SINE MIR 29 195 -13 22 0 0 0 chr6 199064 199086 -189080468 + AT_rich Low_complexity Low_complexity 1 22 0 2707 36 0 0 chr6 200347 200651 -189078903 - AluY SINE Alu -7 304 1 900 247 109 31 chr6 200694 201107 -189078447 + LTR56 LTR ERV1 1 445 0 23 0 0 0 chr6 201299 201322 -189078232 + AT_rich Low_complexity Low_complexity 1 23 0 2043 129 0 7 chr6 201789 202114 -189077440 + AluSx SINE Alu 1 312 0 336 264 112 0 chr6 202123 202248 -189077306 + L1ME4a LINE L1 5813 5951 -170 360 0 0 0 chr6 202328 202368 -189077186 + (TG)n Simple_repeat Simple_repeat 2 41 0 183 219 49 0 chr6 202436 202477 -189077077 - MER5A DNA MER1_type -105 84 42 327 300 36 21 chr6 202708 202848 -189076706 + LTR56 LTR ERV1 1 142 -303 582 225 23 0 chr6 203242 203371 -189076183 - L1MB7 LINE L1 -13 6171 6040 261 252 17 9 chr6 204680 204795 -189074759 + GA-rich Low_complexity Low_complexity 2 117 0 201 271 0 0 chr6 205412 205460 -189074094 + L2 LINE L2 3266 3313 0 258 208 65 13 chr6 205746 205823 -189073731 + L1MB3 LINE L1 5574 5654 -467 2415 171 27 5 chr6 206923 207367 -189072187 + L1MB3 LINE L1 5729 6182 -1 187 234 52 52 chr6 208105 208182 -189071372 - MER5A DNA MER1_type 0 189 113 439 189 189 33 chr6 208978 209246 -189070308 + MER31B LTR ERV1 4 389 -77 230 279 0 15 chr6 209227 209295 -189070259 + MER67D LTR ERV1 440 506 -8 * 193 277 11 53 chr6 209413 209507 -189070047 - L2 LINE L2 -43 3229 3140 22 56 0 0 chr6 210094 210130 -189069424 + AT_rich Low_complexity Low_complexity 1 36 0 315 254 296 14 chr6 211043 211256 -189068298 + LTR67 LTR ERVL 277 549 -8 210 305 160 25 chr6 211530 211730 -189067824 + L2 LINE L2 2597 2823 -491 329 250 10 21 chr6 211861 211957 -189067597 - Charlie8 DNA MER1_type -2298 119 25 194 219 344 44 chr6 212965 213125 -189066429 + L2 LINE L2 2931 3138 -175 212 328 16 0 chr6 213173 213234 -189066320 + L2 LINE L2 3172 3233 -39 919 215 75 5 chr6 214357 214557 -189064997 + MER20 DNA MER1_type 2 215 -4 222 175 38 138 chr6 214736 214816 -189064738 - MIR SINE MIR -70 192 121 202 261 46 31 chr6 214803 214868 -189064686 + MIR3 SINE MIR 140 205 -3 * 249 203 55 78 chr6 215097 215225 -189064329 - 7SK RNA RNA -68 125 1 437 242 93 43 chr6 215574 215735 -189063819 + MIR SINE MIR 7 175 -87 203 324 176 7 chr6 216064 216200 -189063354 + MIR SINE MIR 63 221 -41 1784 151 0 77 chr6 216224 216548 -189063006 - AluJb SINE Alu -13 299 1 1307 144 40 104 chr6 217274 217620 -189061934 + MER33 DNA MER1_type 1 324 0 217 288 0 0 chr6 217684 217743 -189061811 + L2 LINE L2 3246 3304 -9 189 0 0 0 chr6 218223 218244 -189061310 + (A)n Simple_repeat Simple_repeat 1 21 0 2808 223 64 11 chr6 219917 220792 -189058762 + L1M4 LINE L1 2334 3254 -2892 882 249 75 59 chr6 220792 221109 -189058445 + L1M4 LINE L1 4838 5155 -991 627 269 35 101 chr6 221122 221695 -189057859 + L1MC4a LINE L1 6049 6583 -1225 207 222 42 14 chr6 221739 221811 -189057743 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 299 61 19 chr6 221911 222175 -189057379 + L1MC5 LINE L1 7251 7525 -436 264 242 64 57 chr6 222287 222425 -189057129 + L1ME3 LINE L1 5979 6126 -38 23 65 0 16 chr6 223048 223081 -189056473 + AT_rich Low_complexity Low_complexity 1 34 -27 414 43 0 0 chr6 223081 223128 -189056426 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 223128 223156 -189056398 + AT_rich Low_complexity Low_complexity 34 61 0 353 371 103 23 chr6 224069 224371 -189055183 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 224479 224511 -189055043 + AT_rich Low_complexity Low_complexity 1 32 0 2295 45 15 0 chr6 224571 224837 -189054717 - L1PA5 LINE L1 -4 6150 5881 293 385 60 26 chr6 224840 225074 -189054480 - L2 LINE L2 -606 2708 2467 795 190 92 6 chr6 225323 225486 -189054068 + AluSp SINE Alu 123 299 -14 873 297 60 39 chr6 225662 226097 -189053457 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 226132 226155 -189053399 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4150 207 28 31 chr6 226155 227169 -189052385 - L1 LINE L1 -1449 4697 3687 1275 278 67 38 chr6 227219 227979 -189051575 - L1ME3A LINE L1 -2027 4119 3338 7333 154 30 11 chr6 227994 228125 -189051429 - L1MA8 LINE L1 -53 6238 6111 5229 107 18 1 chr6 228125 228854 -189050700 + L1MA2 LINE L1 5556 6303 -1 7333 154 30 11 chr6 228854 230836 -189048718 - L1MA8 LINE L1 -180 6111 4083 1995 214 76 15 chr6 230990 231466 -189048088 + LTR22 LTR ERVK 1 505 -4 6351 181 2 7 chr6 231506 232540 -189047014 + L1PA15-16 LINE L1 2 1030 -5819 2763 111 24 0 chr6 232540 232953 -189046601 + L1P4 LINE L1 5268 5690 -478 2118 128 0 0 chr6 232955 233245 -189046309 + AluSq SINE Alu 1 290 -23 374 121 15 0 chr6 233245 233311 -189046243 + (TA)n Simple_repeat Simple_repeat 2 68 0 228 159 0 0 chr6 233313 233357 -189046197 - LTR66 LTR ERVL -169 441 398 2395 121 17 15 chr6 233376 233847 -189045707 + L1PA8 LINE L1 5648 6077 -77 349 198 83 10 chr6 233826 233922 -189045632 + L1PA8 LINE L1 5946 6048 -124 * 351 214 61 10 chr6 233901 233999 -189045555 + L1PA8 LINE L1 5946 6048 -124 * 367 204 61 10 chr6 233978 234076 -189045478 + L1PA8 LINE L1 5946 6048 -124 346 214 61 10 chr6 234055 234153 -189045401 + L1PA8 LINE L1 5946 6048 -124 * 339 214 71 10 chr6 234132 234230 -189045324 + L1PA8 LINE L1 5946 6049 -123 * 335 239 61 10 chr6 234208 234382 -189045172 + L1PA8 LINE L1 5927 6048 -124 * 357 167 62 42 chr6 234361 234438 -189045116 + L1PA8 LINE L1 5946 6027 -145 1435 134 28 0 chr6 234438 234654 -189044900 + L1PA10 LINE L1 5946 6167 -1 357 167 62 42 chr6 234654 234672 -189044882 + L1PA8 LINE L1 6027 6043 -129 585 236 82 73 chr6 234679 235116 -189044438 - L1MEd LINE L1 -4971 1148 708 309 261 23 11 chr6 235123 235211 -189044343 + GA-rich Low_complexity Low_complexity 3 91 0 819 51 0 0 chr6 235297 235395 -189044159 + L1PA5 LINE L1 6055 6152 -2 3171 205 73 11 chr6 235842 236672 -189042882 + L1 LINE L1 2939 3820 -2326 467 273 86 0 chr6 236679 236818 -189042736 + ERVL LTR ERVL 1690 1840 -3924 1847 224 33 0 chr6 236831 237290 -189042264 + L1MA7 LINE L1 3179 3652 -2494 6234 26 1 0 chr6 237306 238027 -189041527 - L1PA4 LINE L1 -180 5975 5254 1508 51 6 0 chr6 238027 238205 -189041349 + L1PA4 LINE L1 5977 6155 0 5289 160 34 33 chr6 238224 239308 -189040246 + L1MA7 LINE L1 3663 4747 -1399 32534 103 16 58 chr6 240482 246902 -189032652 + L1PA7 LINE L1 12 6153 -1 5530 153 51 12 chr6 247650 249155 -189030399 + L1MA7 LINE L1 4736 6287 -4 1262 238 111 31 chr6 249430 250097 -189029457 + L1M4 LINE L1 3559 4514 -1632 394 311 68 15 chr6 253038 253170 -189026384 - MIR3 SINE MIR -40 168 30 347 347 7 20 chr6 255147 255297 -189024257 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 255305 255354 -189024200 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 255370 255617 -189023937 + L1MA4 LINE L1 6049 6295 -5 275 234 36 117 chr6 255666 255803 -189023751 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 256649 256733 -189022821 + AluS SINE Alu 1 84 -228 180 132 0 113 chr6 257934 257987 -189021567 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 260178 260226 -189019328 + AT_rich Low_complexity Low_complexity 1 48 0 730 131 0 83 chr6 260895 261040 -189018514 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 261111 261260 -189018294 + HAL1b LINE L1 742 896 -452 453 307 170 37 chr6 261575 262269 -189017285 - L2 LINE L2 0 3313 2485 564 296 169 22 chr6 262283 262550 -189017004 + L2 LINE L2 900 1205 -2109 1139 280 51 42 chr6 262765 263006 -189016548 + MLT1H1 LTR MaLR 1 238 -317 1829 168 42 25 chr6 263006 263364 -189016190 - THE1B LTR MaLR 0 364 1 11090 105 18 8 chr6 263364 264928 -189014626 - THE1B-int LTR MaLR 0 1580 1 1973 147 39 33 chr6 264928 265288 -189014266 - THE1B LTR MaLR 0 364 3 1139 280 51 42 chr6 265288 265569 -189013985 + MLT1H1 LTR MaLR 237 530 -25 247 250 10 62 chr6 265569 265665 -189013889 + MLT1H1-int LTR MaLR 7 97 -1274 749 167 74 6 chr6 265968 266130 -189013424 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 266132 266494 -189013060 + L1PA14 LINE L1 5781 6161 0 2255 106 0 3 chr6 266631 266933 -189012621 + AluSq SINE Alu 1 301 -12 192 222 111 0 chr6 267448 267502 -189012052 + L2 LINE L2 3254 3313 0 577 325 94 48 chr6 267593 268131 -189011423 + L2 LINE L2 2716 3271 -1 789 342 33 25 chr6 269252 269647 -189009907 + MLT1E LTR MaLR 22 419 -174 527 303 92 43 chr6 269748 270213 -189009341 + L1MEd LINE L1 347 834 -5285 283 233 194 0 chr6 270887 270990 -189008564 - L2 LINE L2 -871 2443 2321 228 255 57 38 chr6 271380 271486 -189008068 + MER65B LTR ERV1 262 369 -162 315 324 40 7 chr6 271606 271754 -189007800 - L1M4 LINE L1 -2470 3676 3524 1207 289 70 13 chr6 271918 272577 -189006977 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 272577 272770 -189006784 + L1 LINE L1 3794 3983 -2163 430 278 155 63 chr6 272770 273153 -189006401 + L1 LINE L1 4508 4925 -1221 1710 224 37 26 chr6 273156 273646 -189005908 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 273647 273734 -189005820 + L1 LINE L1 4924 5012 -1134 846 284 76 29 chr6 273928 274586 -189004968 + L1ME3A LINE L1 5259 5947 -223 203 286 12 12 chr6 274940 275024 -189004530 + (TA)n Simple_repeat Simple_repeat 1 84 0 2166 123 29 45 chr6 275112 275493 -189004061 - THE1C LTR MaLR 0 375 1 419 56 112 0 chr6 276516 276659 -189002895 + (TA)n Simple_repeat Simple_repeat 2 160 0 2495 57 0 0 chr6 276793 277089 -189002465 - AluY SINE Alu -15 296 1 39 68 0 0 chr6 277161 277235 -189002319 + AT_rich Low_complexity Low_complexity 1 74 0 245 164 0 18 chr6 278598 278653 -189000901 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 518 146 0 0 chr6 278692 278788 -189000766 + L1MA5 LINE L1 6200 6295 -5 191 146 24 0 chr6 278931 278972 -189000582 + (TA)n Simple_repeat Simple_repeat 1 42 0 523 257 0 9 chr6 279247 279360 -189000194 + L2 LINE L2 3197 3308 -5 506 382 40 23 chr6 279371 279922 -188999632 + L2 LINE L2 2710 3270 -2 1953 167 13 0 chr6 280085 280385 -188999169 + AluJb SINE Alu 1 304 -8 679 202 21 5 chr6 281558 281746 -188997808 + L1MA4A LINE L1 6112 6302 -1 1291 205 39 35 chr6 281748 282506 -188997048 + L1M4c LINE L1 1451 2302 -4082 21 36 0 0 chr6 282640 282668 -188996886 + AT_rich Low_complexity Low_complexity 1 28 0 369 242 158 33 chr6 283055 283175 -188996379 - L2 LINE L2 -1 3312 3178 1992 130 0 0 chr6 283289 283559 -188995995 - AluSx SINE Alu -42 270 1 285 261 39 78 chr6 284000 284105 -188995449 - L2 LINE L2 -5 3308 3209 2343 107 0 0 chr6 284105 284413 -188995141 - AluSq SINE Alu -5 308 1 285 261 39 78 chr6 284413 284460 -188995094 - L2 LINE L2 -104 3209 3162 1837 113 3 65 chr6 284900 285193 -188994361 - AluSx SINE Alu -1 311 37 716 119 0 18 chr6 285195 285304 -188994250 - FLAM_C SINE Alu -8 135 29 688 158 0 0 chr6 285308 285409 -188994145 + FLAM_C SINE Alu 3 103 -40 874 206 25 0 chr6 285410 285516 -188994038 + L1MB4 LINE L1 1123 1225 -5104 2247 100 3 23 chr6 285516 285825 -188993729 + AluSg SINE Alu 1 303 -7 874 206 25 0 chr6 285825 286261 -188993293 + L1MB4 LINE L1 1225 2091 -4238 444 150 13 8 chr6 286276 286511 -188993043 + AluSq SINE Alu 1 313 0 2141 192 56 50 chr6 289303 289400 -188990154 - L1MC3 LINE L1 -662 7123 7028 4927 28 0 0 chr6 289400 289972 -188989582 - L1PA3 LINE L1 0 6155 5584 2141 192 56 50 chr6 289972 290495 -188989059 - L1MC3 LINE L1 -757 7028 6499 1905 162 0 13 chr6 290641 290944 -188988610 - AluSx SINE Alu -13 299 1 1442 244 98 22 chr6 290968 291643 -188987911 - L1ME2 LINE L1 -218 5946 5214 21 0 0 0 chr6 292555 292576 -188986978 + AT_rich Low_complexity Low_complexity 1 21 0 8483 209 47 29 chr6 292752 293324 -188986230 + L1MB4 LINE L1 2606 3166 -3196 2187 102 0 0 chr6 293324 293634 -188985920 - AluSx SINE Alu 0 310 1 8483 209 47 29 chr6 293634 293798 -188985756 + L1MB4 LINE L1 3166 3326 -3036 2251 115 0 0 chr6 293798 294093 -188985461 + AluSc SINE Alu 1 295 -14 8483 209 47 29 chr6 294093 295725 -188983829 + L1MB4 LINE L1 3326 4927 -1435 2288 89 0 4 chr6 295725 296066 -188983488 - AluY SINE Alu 0 342 3 8483 209 47 29 chr6 296066 296246 -188983308 + L1MB4 LINE L1 4927 5102 -1260 1548 167 61 10 chr6 296246 296540 -188983014 + L1MC1 LINE L1 6016 6324 -9 8483 209 47 29 chr6 296540 297667 -188981887 + L1MB4 LINE L1 5102 6361 -1 1444 104 54 14 chr6 297978 298199 -188981355 + MER30 DNA MER1_type 1 230 0 336 231 90 0 chr6 298301 298379 -188981175 + L2 LINE L2 3225 3309 -4 819 125 0 0 chr6 298726 298854 -188980700 + L1PA16 LINE L1 5698 5825 -341 1384 179 0 21 chr6 298858 299092 -188980462 + AluJo SINE Alu 1 229 -83 1827 128 56 36 chr6 299118 299455 -188980099 + L1PA16 LINE L1 5814 6157 -9 24 32 0 0 chr6 300940 300971 -188978583 + AT_rich Low_complexity Low_complexity 1 31 0 2193 110 3 3 chr6 301034 301335 -188978219 + AluSx SINE Alu 1 301 -11 181 333 0 25 chr6 301630 301711 -188977843 + MIR3 SINE MIR 123 201 -7 494 267 23 80 chr6 302906 302933 -188976621 - MIR3 SINE MIR -27 181 154 1522 177 83 3 chr6 302933 303221 -188976333 + AluJo SINE Alu 1 311 -1 494 267 23 80 chr6 303221 303369 -188976185 - MIR3 SINE MIR -54 154 16 2296 101 0 0 chr6 304029 304325 -188975229 + AluSx SINE Alu 1 296 -16 6363 196 39 54 chr6 306118 306258 -188973296 + L1MB7 LINE L1 3443 3584 -2600 2286 85 3 0 chr6 306258 306553 -188973001 - AluSp SINE Alu -15 298 3 6363 196 39 54 chr6 306553 307773 -188971781 + L1MB7 LINE L1 3584 4820 -1364 4120 102 17 107 chr6 307773 308221 -188971333 + L1MA3 LINE L1 5603 5953 -352 2222 97 0 3 chr6 308221 308519 -188971035 + AluSx SINE Alu 5 301 -11 4120 102 17 107 chr6 308519 308843 -188970711 + L1MA3 LINE L1 5953 6305 0 6363 196 39 54 chr6 308843 309570 -188969984 + L1MB7 LINE L1 4820 5484 -700 2059 90 32 0 chr6 309570 309849 -188969705 + AluSg SINE Alu 1 288 -22 6363 196 39 54 chr6 309849 310540 -188969014 + L1MB7 LINE L1 5484 6184 0 1607 111 0 0 chr6 310806 311031 -188968523 - AluSg/x SINE Alu 0 312 88 337 195 39 0 chr6 311861 311938 -188967616 + MER116 DNA Mariner 1 80 0 975 204 91 18 chr6 312227 312501 -188967053 - LTR37A LTR ERV1 -35 391 98 443 224 24 0 chr6 312549 312634 -188966920 - Tigger2 DNA MER2_type 0 2718 2632 10661 134 8 5 chr6 312654 315410 -188964144 - L1MA3 LINE L1 0 6305 3540 2332 104 28 11 chr6 315410 315766 -188963788 - Tigger2 DNA MER2_type -77 2641 2280 468 159 0 0 chr6 315764 315833 -188963721 - Tigger2 DNA MER2_type -2649 69 1 * 183 297 203 0 chr6 316370 316444 -188963110 - MIR SINE MIR -56 206 118 467 226 63 95 chr6 316509 316591 -188962963 - ORSL DNA AcHobo -4 271 188 2319 75 3 3 chr6 316591 316897 -188962657 + AluSp SINE Alu 1 306 -7 467 226 63 95 chr6 316897 317066 -188962488 - ORSL DNA AcHobo -87 188 28 508 273 130 19 chr6 317608 317762 -188961792 + MIR3 SINE MIR 31 201 -7 1740 122 44 7 chr6 318717 318987 -188960567 - AluSx SINE Alu -3 309 30 926 141 224 0 chr6 319000 319192 -188960362 + L1MA4A LINE L1 6063 6297 -6 2296 72 3 0 chr6 319971 320264 -188959290 + AluSq SINE Alu 1 294 -19 506 291 62 39 chr6 320265 320622 -188958932 - L1ME4a LINE L1 -234 5887 5523 350 281 0 0 chr6 321657 321753 -188957801 + GA-rich Low_complexity Low_complexity 1 96 0 308 62 0 21 chr6 321755 321803 -188957751 + (GGGAGA)n Simple_repeat Simple_repeat 1 47 0 665 169 0 25 chr6 321911 322071 -188957483 + CT-rich Low_complexity Low_complexity 2 157 0 2145 131 0 0 chr6 322280 322592 -188956962 + AluSx SINE Alu 1 312 0 189 259 52 0 chr6 323190 323248 -188956306 + MIR SINE MIR 80 140 -122 2067 103 0 7 chr6 323319 323601 -188955953 - AluSg SINE Alu -30 280 1 2130 115 3 0 chr6 323635 323940 -188955614 + AluSg SINE Alu 1 306 -4 200 128 0 26 chr6 323976 324015 -188955539 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 302 40 79 chr6 324267 324393 -188955161 + MIR3 SINE MIR 15 135 -73 1357 205 160 18 chr6 324393 324793 -188954761 - MLT1C LTR MaLR -7 460 4 209 297 62 0 chr6 324793 324857 -188954697 + MIR SINE MIR 121 188 -74 3824 90 13 26 chr6 325090 325624 -188953930 + MER1A DNA MER1_type 1 527 0 286 337 131 29 chr6 325687 325862 -188953692 + MIR3 SINE MIR 9 201 -7 2367 56 0 7 chr6 326420 326726 -188952828 + AluY SINE Alu 1 304 -7 462 322 132 60 chr6 327180 327583 -188951971 + L1MC4a LINE L1 5262 5733 -2075 432 97 0 0 chr6 327583 327645 -188951909 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 462 322 132 60 chr6 327645 327906 -188951648 + L1MC4a LINE L1 5733 5974 -1834 324 274 0 42 chr6 327831 327926 -188951628 - L1MC4 LINE L1 -1338 6704 6614 * 25 0 0 0 chr6 328950 328975 -188950579 + AT_rich Low_complexity Low_complexity 1 25 0 1994 103 46 0 chr6 329000 329282 -188950272 + AluSq SINE Alu 2 296 -17 201 304 14 0 chr6 329426 329495 -188950059 + CT-rich Low_complexity Low_complexity 4 73 0 270 257 257 0 chr6 329873 330021 -188949533 + MLT1L LTR MaLR 413 598 -17 1219 280 77 70 chr6 330372 331012 -188948542 + MER21B LTR ERV1 24 667 -196 196 288 72 39 chr6 331942 332066 -188947488 - MIR3 SINE MIR -54 154 51 367 281 92 12 chr6 332690 332854 -188946700 - MLT1L LTR MaLR -295 320 144 428 290 32 9 chr6 332854 333000 -188946554 - MER5B DNA MER1_type -4 174 32 2441 202 50 47 chr6 333511 334111 -188945443 + MER7C DNA MER2_type 1 602 0 2129 153 19 48 chr6 335382 335794 -188943760 + MER57A LTR ERV1 1 400 -3 673 243 93 4 chr6 337144 337391 -188942163 + L1MC4 LINE L1 7768 8036 -6 327 252 59 34 chr6 337399 337518 -188942036 + L1M4 LINE L1 4407 4528 -1618 542 218 58 13 chr6 337987 338143 -188941411 + MIR3 SINE MIR 36 198 -10 191 281 61 0 chr6 339330 339412 -188940142 - MIR SINE MIR -153 109 23 297 268 110 47 chr6 339657 339784 -188939770 - L2 LINE L2 -16 3256 3122 345 317 80 30 chr6 339874 340073 -188939481 - MIR SINE MIR -20 242 34 236 164 36 0 chr6 340910 340965 -188938589 + (TA)n Simple_repeat Simple_repeat 1 57 0 228 222 0 0 chr6 341072 341117 -188938437 - MER5A DNA MER1_type 0 189 145 2218 97 3 0 chr6 341223 341523 -188938031 + AluSq SINE Alu 1 301 -12 492 296 106 22 chr6 341713 341939 -188937615 + MIR SINE MIR 17 261 -1 482 316 11 27 chr6 342533 342720 -188936834 - MIR SINE MIR -1 261 78 4094 174 88 3 chr6 343344 344104 -188935450 - LTR1B LTR ERV1 0 826 2 2150 88 7 17 chr6 344643 344939 -188934615 + AluSq SINE Alu 1 293 -20 2747 200 48 2 chr6 344939 345540 -188934014 - L1MB3 LINE L1 -9 6174 5546 283 205 26 51 chr6 345808 345886 -188933668 + L1MC4 LINE L1 7785 7860 -182 214 208 42 0 chr6 348358 348406 -188931148 - MIR SINE MIR -96 166 117 244 258 32 0 chr6 349059 349121 -188930433 + MIR SINE MIR 82 145 -117 2067 116 0 0 chr6 349537 349845 -188929709 - AluSx SINE Alu 0 308 1 1906 138 3 20 chr6 349882 350186 -188929368 + AluSx SINE Alu 1 299 -13 281 179 0 75 chr6 350338 350405 -188929149 - MIR3 SINE MIR -53 155 94 260 223 27 115 chr6 350398 350525 -188929029 + L2 LINE L2 3138 3252 -20 * 1101 190 68 0 chr6 350525 350746 -188928808 - MER46A DNA MER2_type 0 236 1 260 223 27 115 chr6 350746 350766 -188928788 + L2 LINE L2 3252 3272 0 343 232 84 84 chr6 351058 351213 -188928341 + L1MCa LINE L1 1930 2084 -4342 837 198 77 0 chr6 352671 352853 -188926701 - MER20 DNA MER1_type -21 198 3 699 150 9 0 chr6 353168 353292 -188926262 + MER46A DNA MER2_type 107 333 0 220 216 27 95 chr6 353621 353695 -188925859 - L2 LINE L2 -3 3269 3201 204 272 67 77 chr6 354002 354197 -188925357 - L2 LINE L2 -870 2444 2252 357 202 46 55 chr6 354529 354638 -188924916 - MER5A DNA MER1_type 0 189 82 1301 209 116 15 chr6 354717 355113 -188924441 - L1MD2 LINE L1 -228 6131 5693 319 251 46 0 chr6 355183 355315 -188924239 - L1MB3 LINE L1 -691 5479 5337 2126 172 21 23 chr6 355320 355709 -188923845 + LTR45B LTR ERV1 4 391 -98 2203 113 3 10 chr6 356347 356649 -188922905 + AluSc SINE Alu 1 300 -9 1739 153 67 0 chr6 356767 357049 -188922505 + AluSx SINE Alu 1 301 -11 2304 86 7 10 chr6 358240 358531 -188921023 - AluSx SINE Alu -22 290 1 2294 105 16 0 chr6 358777 359081 -188920473 - AluSc SINE Alu 0 309 1 2239 121 0 0 chr6 359661 359959 -188919595 - AluSq SINE Alu -3 310 13 2155 136 0 0 chr6 360540 360834 -188918720 + AluSx SINE Alu 1 294 -18 928 148 0 13 chr6 360909 361267 -188918287 + (TCCA)n Simple_repeat Simple_repeat 1 530 0 317 217 0 130 chr6 361280 361418 -188918136 - L2 LINE L2 0 3313 3194 227 215 129 21 chr6 362110 362203 -188917351 + L1ME LINE L1 5830 5932 -189 1271 246 20 6 chr6 362244 362594 -188916960 - L1MB3 LINE L1 -1095 5051 4697 2406 98 0 0 chr6 362950 363247 -188916307 - AluSx SINE Alu -15 297 1 674 274 91 4 chr6 364078 364308 -188915246 - MIR SINE MIR -11 251 2 598 88 7 51 chr6 364363 364500 -188915054 + (CA)n Simple_repeat Simple_repeat 2 132 0 2153 108 7 3 chr6 364750 365047 -188914507 - AluSc SINE Alu -11 298 1 651 191 121 0 chr6 365424 365581 -188913973 + MER45A DNA AcHobo 3 178 0 1268 208 46 74 chr6 367133 367527 -188912027 + MLT1B LTR MaLR 1 383 -7 219 357 51 0 chr6 369058 369156 -188910398 + L2 LINE L2 3132 3234 -38 2380 60 0 23 chr6 369180 369480 -188910074 + AluY SINE Alu 1 293 -18 239 339 73 0 chr6 371127 371251 -188908303 + MIR SINE MIR 14 146 -116 748 207 22 137 chr6 371789 372059 -188907495 + MER8 DNA MER2_type 1 239 0 246 236 0 0 chr6 372108 372163 -188907391 - LTR40a LTR ERVL -24 495 441 598 252 119 54 chr6 372173 372451 -188907103 - LTR40c LTR ERVL -143 322 27 244 253 181 0 chr6 374785 374868 -188904686 - L3 LINE CR1 -124 1453 1356 2444 72 3 3 chr6 375456 375760 -188903794 - AluSp SINE Alu -9 304 1 4499 156 91 123 chr6 377091 378466 -188901088 - pTR5 LTR ERV1 -32 1683 831 5260 84 98 7 chr6 378466 379223 -188900331 + LTR12 LTR ERV1 1 826 0 4499 156 91 123 chr6 379223 380025 -188899529 - pTR5 LTR ERV1 -884 831 5 2127 130 3 3 chr6 380054 380361 -188899193 + AluSx SINE Alu 1 307 -5 2394 96 0 0 chr6 380428 380729 -188898825 - AluSg SINE Alu -9 301 1 2091 127 0 3 chr6 381300 381591 -188897963 - AluSq SINE Alu -23 290 1 300 302 86 43 chr6 381608 381747 -188897807 + HAL1b LINE L1 320 464 -884 226 153 71 24 chr6 381885 381970 -188897584 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 432 83 28 0 chr6 382342 382414 -188897140 - AluSp/q SINE Alu -2 311 238 2127 101 4 4 chr6 382414 382690 -188896864 - AluSp SINE Alu -37 276 1 2170 197 75 8 chr6 383167 383645 -188895909 - L1M1 LINE L1 -536 5764 5255 1505 181 44 0 chr6 383648 383963 -188895591 - L1M1 LINE L1 -1010 5136 4808 2101 139 45 31 chr6 384065 384424 -188895130 - THE1B LTR MaLR 0 364 1 11158 110 16 3 chr6 384424 385984 -188893570 - THE1B-int LTR MaLR 0 1580 1 2054 157 6 28 chr6 385984 386347 -188893207 - THE1A LTR MaLR 0 355 1 944 190 6 11 chr6 386373 386552 -188893002 - AluJo SINE Alu -17 295 118 803 164 0 21 chr6 386584 386724 -188892830 - AluJo SINE Alu -175 137 1 21 0 0 0 chr6 387594 387615 -188891939 + AT_rich Low_complexity Low_complexity 1 21 0 224 54 54 0 chr6 389159 389196 -188890358 + T-rich Low_complexity Low_complexity 3 41 0 375 208 66 9 chr6 389199 389305 -188890249 - L1MA9 LINE L1 -37 6275 6164 2245 118 0 7 chr6 389316 389622 -188889932 - AluSg SINE Alu -6 304 1 2127 98 0 69 chr6 390505 390823 -188888731 - AluSg SINE Alu -14 296 1 2409 84 0 3 chr6 391040 391349 -188888205 - AluY SINE Alu -3 308 1 1005 174 12 0 chr6 391860 392027 -188887527 + FAM SINE Alu 2 170 -5 725 220 84 5 chr6 392343 392534 -188887020 - MER46C DNA MER2_type -132 206 1 364 253 43 56 chr6 392558 392720 -188886834 - MIR SINE MIR -36 226 67 5808 94 44 14 chr6 393446 393497 -188886057 - L1PB1 LINE L1 -1 6150 6102 2088 86 75 0 chr6 393497 393777 -188885777 - AluY SINE Alu -10 301 1 5808 94 44 14 chr6 393777 394620 -188884934 - L1PB1 LINE L1 -49 6102 5231 2128 171 100 23 chr6 394746 395181 -188884373 - L1MB2 LINE L1 -2 6169 5692 2223 95 14 3 chr6 395181 395476 -188884078 + AluY SINE Alu 1 298 -13 2128 171 100 23 chr6 395476 395520 -188884034 - L1MB2 LINE L1 -479 5692 5653 765 155 88 52 chr6 395522 395716 -188883838 + L1 LINE L1 4111 4311 -1835 * 16401 76 11 5 chr6 395706 397506 -188882048 - L1PA7 LINE L1 -95 6059 4242 2496 78 0 0 chr6 397506 397814 -188881740 - AluY SINE Alu -3 308 1 16401 76 11 5 chr6 397814 398931 -188880623 - L1PA7 LINE L1 -1912 4242 3133 204 184 0 0 chr6 401265 401314 -188878240 + GA-rich Low_complexity Low_complexity 2 50 0 216 0 0 0 chr6 402196 402220 -188877334 + (A)n Simple_repeat Simple_repeat 1 24 0 257 255 18 0 chr6 402937 403029 -188876525 - MIR SINE MIR -60 148 54 824 276 18 5 chr6 403727 403948 -188875606 - MER58A DNA MER1_type 0 224 1 193 57 57 0 chr6 404076 404111 -188875443 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 208 129 32 48 chr6 404297 404359 -188875195 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 626 143 10 0 chr6 406271 406369 -188873185 - MER72 LTR ERV1 -623 99 1 573 266 16 11 chr6 406582 406770 -188872784 - L1MC/D LINE L1 -2020 5765 5577 2940 155 46 16 chr6 406775 407335 -188872219 - MER34C LTR ERV1 -2 583 7 1168 227 85 26 chr6 407346 407958 -188871596 - L1MC/D LINE L1 -745 5401 4898 523 217 9 0 chr6 407974 408080 -188871474 + LTR60 LTR ERV1 1 107 -479 1077 187 64 132 chr6 408116 408586 -188870968 + LTR60 LTR ERV1 106 543 -43 * 4128 176 36 60 chr6 408431 409812 -188869742 + TAR1 Satellite telomeric 1 1348 -237 1183 49 3 38 chr6 409812 410163 -188869391 + (TTAGGG)n Simple_repeat Simple_repeat 1 338 0 951 214 0 5 chr6 410181 410368 -188869186 - AluJb SINE Alu -10 302 117 388 226 39 49 chr6 410368 410470 -188869084 - MER8 DNA MER2_type -136 103 3 1671 181 0 7 chr6 410581 410879 -188868675 + AluJo SINE Alu 1 296 -16 2217 109 0 0 chr6 412266 412569 -188866985 + AluSg SINE Alu 1 303 -7 2244 65 14 0 chr6 413474 413749 -188865805 - AluSx SINE Alu -11 301 23 594 194 118 12 chr6 414406 414576 -188864978 + L1MD3 LINE L1 7798 7985 -10 703 88 51 8 chr6 416762 417003 -188862551 + (TA)n Simple_repeat Simple_repeat 1 251 0 481 126 0 99 chr6 417503 417614 -188861940 + L1MA3 LINE L1 6204 6303 -2 256 339 39 23 chr6 418776 418906 -188860648 - L2 LINE L2 0 3272 3141 200 267 22 56 chr6 419435 419525 -188860029 + MIR SINE MIR 65 151 -111 267 254 48 120 chr6 419657 419866 -188859688 + L2 LINE L2 3073 3266 -6 207 206 0 0 chr6 419875 419909 -188859645 + L2 LINE L2 3168 3201 -71 1533 265 167 39 chr6 420106 420981 -188858573 + L1ME2 LINE L1 100 1086 -4984 1080 247 44 16 chr6 420975 421291 -188858263 + L1ME2 LINE L1 5285 5609 -489 * 2551 40 3 3 chr6 421381 421681 -188857873 + AluY SINE Alu 1 300 -11 1236 175 4 43 chr6 421687 421921 -188857633 + AluJb SINE Alu 71 295 -17 1342 236 89 14 chr6 421921 422357 -188857197 + L1ME2 LINE L1 5630 6098 0 3432 168 46 27 chr6 423871 424604 -188854950 - L1MB8 LINE L1 0 6112 5366 1409 223 113 9 chr6 424604 425154 -188854400 - L1MB8 LINE L1 -940 5140 4508 849 58 53 0 chr6 426422 426593 -188852961 + (TA)n Simple_repeat Simple_repeat 1 180 0 909 51 28 22 chr6 426610 426788 -188852766 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 150 0 0 chr6 426812 426872 -188852682 + (TA)n Simple_repeat Simple_repeat 2 61 0 410 323 56 0 chr6 427346 427507 -188852047 - MIR SINE MIR -75 187 18 387 0 0 0 chr6 428424 428467 -188851087 + (TG)n Simple_repeat Simple_repeat 2 44 0 285 205 90 13 chr6 431094 431172 -188848382 + L1ME LINE L1 13 96 -5974 1399 216 65 30 chr6 431838 432297 -188847257 - L1MB8 LINE L1 -2946 3134 2660 2755 249 73 46 chr6 432303 434080 -188845474 - L1MB8 LINE L1 -3528 2552 729 * 13058 29 9 2 chr6 434074 435652 -188843902 - L1P LINE L1 -1990 4156 2567 500 183 99 47 chr6 435648 435839 -188843715 - L1ME LINE L1 -5108 962 762 * 21 57 0 0 chr6 436475 436510 -188843044 + AT_rich Low_complexity Low_complexity 1 35 0 353 281 113 45 chr6 437349 437570 -188841984 + MIR SINE MIR 13 248 -14 2387 84 0 3 chr6 439988 440284 -188839270 - AluSc SINE Alu -14 295 1 1809 142 110 23 chr6 443674 443984 -188835570 + MER1B DNA MER1_type 1 337 0 2004 146 0 0 chr6 445357 445637 -188833917 - AluSx SINE Alu -32 280 1 2252 109 0 3 chr6 446820 447123 -188832431 + AluSq SINE Alu 1 302 -11 786 107 13 3 chr6 447300 447421 -188832133 + MSTA LTR MaLR 319 428 0 3300 141 33 2 chr6 447421 447940 -188831614 + MSTA-int LTR MaLR 1 535 -1116 371 190 40 30 chr6 448035 448135 -188831419 - MER34B-int LTR ERV1 -4937 1394 1294 390 216 36 82 chr6 448474 448668 -188830886 - MER34B-int LTR ERV1 -6078 253 69 474 258 106 43 chr6 448730 449052 -188830502 - MER34B LTR ERV1 -3 562 221 392 270 81 0 chr6 449092 449203 -188830351 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 450415 450455 -188829099 + GA-rich Low_complexity Low_complexity 5 47 0 251 351 114 8 chr6 450604 450735 -188828819 + L2 LINE L2 3100 3244 -28 300 261 203 51 chr6 450792 451087 -188828467 + L1ME4a LINE L1 5744 6083 -38 198 65 32 65 chr6 452059 452121 -188827433 + (TCTCC)n Simple_repeat Simple_repeat 1 60 0 * 823 75 43 12 chr6 452118 452279 -188827275 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 402 38 53 61 chr6 452253 452384 -188827170 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 * 3048 216 66 7 chr6 452541 452818 -188826736 - MER44D DNA MER2_type -1890 597 338 1645 178 17 0 chr6 452818 453116 -188826438 - AluJb SINE Alu -8 304 2 3048 216 66 7 chr6 453116 453523 -188826031 - MER44D DNA MER2_type -2149 338 1 2252 118 7 0 chr6 455010 455314 -188824240 - AluSx SINE Alu -6 306 1 415 235 73 7 chr6 456740 456876 -188822678 + MIR SINE MIR 9 153 -109 591 200 14 48 chr6 457865 458010 -188821544 - MER4C LTR ERV1 -63 402 263 1239 180 74 77 chr6 458100 458450 -188821104 - MER4A LTR ERV1 -315 349 1 509 258 144 25 chr6 458452 458778 -188820776 - L1M4 LINE L1 -2931 3215 2851 823 153 24 0 chr6 458778 458902 -188820652 + FLAM_C SINE Alu 1 127 -16 294 249 99 128 chr6 458902 459280 -188820274 - L1M4 LINE L1 -3282 2864 2511 2171 110 7 0 chr6 459280 459571 -188819983 - AluSq SINE Alu -20 293 1 294 249 99 128 chr6 459571 459831 -188819723 - L1M4 LINE L1 -3635 2511 2245 321 222 58 24 chr6 460108 460526 -188819028 - L1MD2 LINE L1 0 7808 6165 2216 110 0 0 chr6 461117 461408 -188818146 + AluSg SINE Alu 1 291 -19 618 222 12 8 chr6 511419 511669 -188767885 + CT-rich Low_complexity Low_complexity 1 251 0 5060 172 5 5 chr6 511767 513297 -188766257 + L1P5 LINE L1 4262 5791 -360 290 140 35 0 chr6 513297 513354 -188766200 + (CATA)n Simple_repeat Simple_repeat 3 61 0 233 267 0 11 chr6 513354 513444 -188766110 + L1MC4 LINE L1 6614 6702 -1340 2800 103 0 20 chr6 513464 513854 -188765700 + L1PB1 LINE L1 5769 6150 -1 23 0 0 0 chr6 513854 513877 -188765677 + AT_rich Low_complexity Low_complexity 1 23 0 198 245 51 82 chr6 514041 514139 -188765415 + MIR SINE MIR 105 199 -63 391 275 17 0 chr6 514247 514367 -188765187 + L2 LINE L2 3192 3313 0 563 125 10 0 chr6 514391 514495 -188765059 + (TC)n Simple_repeat Simple_repeat 1 105 0 10028 115 7 8 chr6 514872 516770 -188762784 - L1PA10 LINE L1 -2 6166 4263 2009 154 3 3 chr6 516770 517081 -188762473 + AluSx SINE Alu 1 311 -1 10028 115 7 8 chr6 517081 517389 -188762165 - L1PA10 LINE L1 -1905 4263 3956 316 341 98 43 chr6 517892 518197 -188761357 - L3 LINE CR1 -547 1030 709 210 306 241 20 chr6 518206 518405 -188761149 - L3 LINE CR1 -979 598 356 12843 125 26 19 chr6 518697 519005 -188760549 - Tigger1 DNA MER2_type -370 2048 1743 2140 136 0 13 chr6 519005 519321 -188760233 - AluJo SINE Alu 0 312 1 12843 125 26 19 chr6 519321 521041 -188758513 - Tigger1 DNA MER2_type -675 1743 7 2381 91 0 0 chr6 521767 522063 -188757491 - AluSg SINE Alu -14 296 1 2052 133 3 0 chr6 522137 522467 -188757087 - AluSx SINE Alu 0 312 1 623 227 97 5 chr6 523170 523355 -188756199 + L1ME2 LINE L1 5963 6164 0 427 258 81 66 chr6 528089 528287 -188751267 - MER63A DNA MER1_type -9 201 1 229 338 90 7 chr6 528298 528443 -188751111 + L2 LINE L2 2089 2245 -1069 337 339 58 37 chr6 528568 528757 -188750797 - MIR SINE MIR -21 241 49 885 219 59 0 chr6 529799 530018 -188749536 - Tigger6 DNA MER2_type -2 1595 1364 4973 40 2 0 chr6 530018 530639 -188748915 - L1P LINE L1 -2696 3450 2829 3541 47 0 0 chr6 530639 531042 -188748512 + L1PA5 LINE L1 5748 6152 -2 371 254 123 0 chr6 531237 531367 -188748187 + MER63A DNA MER1_type 56 201 -9 21 71 0 0 chr6 533529 533571 -188745983 + AT_rich Low_complexity Low_complexity 1 42 0 624 222 90 21 chr6 535623 535812 -188743742 - L1ME2 LINE L1 0 6164 5963 264 267 89 30 chr6 536993 537128 -188742426 + MIR3 SINE MIR 39 181 -27 206 192 0 39 chr6 537797 537849 -188741705 + GA-rich Low_complexity Low_complexity 2 51 0 189 107 0 0 chr6 538190 538218 -188741336 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 1276 199 101 136 chr6 540257 541288 -188738266 + L1MC5 LINE L1 6857 7851 -110 1891 153 10 3 chr6 544494 544794 -188734760 - AluJb SINE Alu -10 302 1 664 183 0 0 chr6 546655 546759 -188732795 - FRAM SINE Alu -17 159 56 505 94 10 83 chr6 547252 547381 -188732173 + L1PA8 LINE L1 6082 6172 0 744 315 27 10 chr6 547431 547723 -188731831 - L1MEc LINE L1 -2386 3829 3533 300 253 62 41 chr6 547726 547872 -188731682 - L1MEc LINE L1 -4519 1877 1729 418 259 53 35 chr6 547941 548111 -188731443 - L1MEc LINE L1 -5895 310 138 264 314 95 7 chr6 548430 548567 -188730987 - L3 LINE CR1 -1102 475 327 24 53 0 0 chr6 548589 548627 -188730927 + AT_rich Low_complexity Low_complexity 1 38 0 358 279 66 27 chr6 548896 549079 -188730475 - L1ME2 LINE L1 -314 5807 5618 343 293 44 79 chr6 549140 549369 -188730185 - L1ME2 LINE L1 -607 5557 5337 2478 78 3 0 chr6 549399 549706 -188729848 - AluSp SINE Alu -5 308 1 771 249 42 46 chr6 549770 549987 -188729567 + MIR SINE MIR 42 257 -5 26 50 0 0 chr6 550782 550822 -188728732 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 550946 550967 -188728587 + AT_rich Low_complexity Low_complexity 1 21 0 1696 194 0 10 chr6 553725 554024 -188725530 - MER2 DNA MER2_type -8 337 42 231 218 36 91 chr6 554078 554188 -188725366 - L2 LINE L2 -569 2745 2642 187 338 0 27 chr6 554253 554327 -188725227 - L2 LINE L2 -556 2758 2687 22 0 0 0 chr6 554864 554886 -188724668 + AT_rich Low_complexity Low_complexity 1 22 0 2027 143 20 64 chr6 555793 556185 -188723369 - THE1C LTR MaLR 0 375 1 297 323 60 39 chr6 557078 557310 -188722244 + HAL1 LINE L1 1120 1356 -1151 297 68 0 0 chr6 557389 557433 -188722121 + (GA)n Simple_repeat Simple_repeat 1 44 0 436 329 48 18 chr6 557439 557667 -188721887 + HAL1b LINE L1 358 592 -756 461 223 103 29 chr6 557912 558154 -188721400 + L1ME2 LINE L1 2942 3201 -2945 900 210 6 33 chr6 558158 558339 -188721215 + AluJo SINE Alu 113 288 -24 476 242 150 16 chr6 558357 560100 -188719454 + L1ME2 LINE L1 3209 5507 -659 1373 236 110 6 chr6 560544 561035 -188718519 + L1ME2 LINE L1 5623 6164 0 396 205 13 0 chr6 561621 561698 -188717856 + Tigger5 DNA MER2_type 1 78 -2245 293 200 12 71 chr6 561698 561758 -188717796 - Tigger5 DNA MER2_type -3 2320 2265 2245 103 3 0 chr6 561758 562058 -188717496 + AluSg1 SINE Alu 1 301 -8 293 200 12 71 chr6 562058 562082 -188717472 - Tigger5 DNA MER2_type -58 2265 2241 * 369 176 0 0 chr6 562078 562146 -188717408 + Tigger5 DNA MER2_type 2256 2323 0 1096 121 0 0 chr6 563072 563221 -188716333 - AluSq/x SINE Alu -164 149 1 673 262 43 24 chr6 563513 563886 -188715668 + L1MEd LINE L1 970 1249 -4882 449 283 135 74 chr6 563920 564918 -188714636 + L1MEd LINE L1 2579 3637 -2492 265 261 34 42 chr6 564918 565037 -188714517 + L1ME2 LINE L1 5834 5951 -227 1455 172 74 16 chr6 566188 566666 -188712888 + L1MA7 LINE L1 5749 6295 -5 2925 3 0 0 chr6 567832 568145 -188711409 + AluYb8 SINE Alu 1 313 -5 411 251 102 21 chr6 568681 568916 -188710638 + L1ME4a LINE L1 5631 5884 -237 316 235 29 73 chr6 569027 569163 -188710391 + L1ME4a LINE L1 5992 6121 0 2227 159 30 28 chr6 569462 569895 -188709659 + Tigger2a DNA MER2_type 1 434 0 211 263 165 45 chr6 569928 570061 -188709493 + MIR3 SINE MIR 4 152 -56 1204 228 71 50 chr6 574929 575393 -188704161 + LTR42 LTR ERVL 2 475 -20 476 306 135 5 chr6 575444 575666 -188703888 + L2 LINE L2 2178 2428 -886 1913 146 3 0 chr6 575895 576183 -188703371 - AluSx SINE Alu -23 289 1 206 312 9 18 chr6 576234 576343 -188703211 + (TA)n Simple_repeat Simple_repeat 2 109 0 243 103 0 0 chr6 576344 576383 -188703171 + (TG)n Simple_repeat Simple_repeat 2 40 0 2241 92 0 7 chr6 577012 577306 -188702248 - AluSg SINE Alu -18 292 1 273 299 133 88 chr6 580109 580304 -188699250 - L2 LINE L2 -24 3289 3104 2499 74 0 3 chr6 580304 580613 -188698941 + AluSc SINE Alu 1 308 -1 273 299 133 88 chr6 580613 580839 -188698715 - L2 LINE L2 -209 3104 2849 2223 101 3 16 chr6 581496 581804 -188697750 + AluSx SINE Alu 1 304 -8 384 229 47 84 chr6 583338 583552 -188696002 - Charlie5 DNA MER1_type 0 2624 2419 2386 92 0 3 chr6 583668 583974 -188695580 - AluSq SINE Alu -8 305 1 28 86 0 0 chr6 583975 584045 -188695509 + AT_rich Low_complexity Low_complexity 1 70 0 243 221 26 39 chr6 584322 584399 -188695155 - MER8 DNA MER2_type -162 77 2 2277 83 14 0 chr6 584558 584848 -188694706 - AluSc SINE Alu -15 294 1 318 243 111 62 chr6 586538 586781 -188692773 - L1ME4a LINE L1 -35 6086 5832 200 273 0 0 chr6 587369 587424 -188692130 + GA-rich Low_complexity Low_complexity 3 57 0 30 59 0 0 chr6 587897 587948 -188691606 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 588533 588555 -188690999 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 588992 589013 -188690541 + AT_rich Low_complexity Low_complexity 1 21 0 226 315 240 0 chr6 589193 589339 -188690215 - L2 LINE L2 -531 2783 2603 635 302 215 6 chr6 589620 590113 -188689441 + L2 LINE L2 2111 2706 -608 250 324 0 0 chr6 590255 590366 -188689188 + L2 LINE L2 2949 3059 -254 33 0 0 0 chr6 590425 590458 -188689096 + AT_rich Low_complexity Low_complexity 1 33 0 382 283 23 28 chr6 590520 590697 -188688857 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 814 262 74 68 chr6 591060 591571 -188687983 + MLT2B1 LTR ERVL 1 514 -6 2519 62 0 0 chr6 593094 593399 -188686155 - AluY SINE Alu -6 305 1 185 318 0 61 chr6 593504 593570 -188685984 - L2 LINE L2 -18 3295 3234 350 230 355 7 chr6 593580 593732 -188685822 - MIR SINE MIR 0 262 58 394 243 189 0 chr6 595228 595339 -188684215 - MIR SINE MIR -67 195 64 58 60 0 0 chr6 596606 596706 -188682848 + AT_rich Low_complexity Low_complexity 1 100 0 628 313 86 48 chr6 596747 597306 -188682248 - L1MC4a LINE L1 -1694 6114 5535 218 263 105 94 chr6 597631 597802 -188681752 - L2 LINE L2 -5 3308 3136 1726 92 78 163 chr6 597993 598150 -188681404 + MSTB LTR MaLR 7 176 -250 1581 109 17 0 chr6 598150 598389 -188681165 + MER75B DNA T2_type 1 243 0 1726 92 78 163 chr6 598389 598690 -188680864 + MSTB LTR MaLR 176 426 0 27 29 0 0 chr6 599537 599571 -188679983 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 599972 599993 -188679561 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr6 601116 601160 -188678394 + AT_rich Low_complexity Low_complexity 1 44 0 521 264 39 19 chr6 601243 601398 -188678156 - L2 LINE L2 0 3313 3156 21 95 0 0 chr6 601960 602023 -188677531 + AT_rich Low_complexity Low_complexity 1 63 0 2209 130 0 0 chr6 603006 603306 -188676248 - AluSg SINE Alu -10 300 1 211 280 40 13 chr6 603686 603761 -188675793 + MIR3 SINE MIR 132 208 0 2148 113 3 10 chr6 603978 604279 -188675275 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 605590 605610 -188673944 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 255 125 0 0 chr6 605694 605734 -188673820 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr6 607039 607069 -188672485 + AT_rich Low_complexity Low_complexity 1 30 0 2429 71 0 0 chr6 610215 610510 -188669044 - AluY SINE Alu -16 295 1 699 209 68 80 chr6 610769 611095 -188668459 + L1MC5 LINE L1 7612 7933 -28 2080 107 7 24 chr6 611320 611618 -188667936 - AluSg SINE Alu -17 293 1 262 293 71 10 chr6 612361 612460 -188667094 + L2 LINE L2 2955 3059 -213 302 229 60 131 chr6 612653 612797 -188666757 - MER5B DNA MER1_type -3 175 45 2432 50 0 30 chr6 612797 613098 -188666456 + AluY SINE Alu 7 298 -13 302 229 60 131 chr6 613098 613136 -188666418 - MER5B DNA MER1_type -133 45 6 21 0 0 0 chr6 613260 613281 -188666273 + AT_rich Low_complexity Low_complexity 1 21 0 406 316 153 54 chr6 613649 614732 -188664822 + L2 LINE L2 2028 3250 -22 180 261 22 0 chr6 615079 615125 -188664429 + L2 LINE L2 3201 3247 -25 2062 128 0 28 chr6 615710 616031 -188663523 + AluSx SINE Alu 1 312 0 229 311 37 30 chr6 618748 618883 -188660671 + MIR3 SINE MIR 67 202 -6 1715 181 11 0 chr6 619343 619630 -188659924 - AluJo SINE Alu -19 293 4 471 298 54 0 chr6 619900 620068 -188659486 - MIR SINE MIR -10 252 76 2283 84 0 24 chr6 620148 620446 -188659108 - AluSg SINE Alu -19 291 1 623 227 97 5 chr6 621149 621334 -188658220 + L1ME2 LINE L1 5963 6164 0 469 255 75 70 chr6 626428 626628 -188652926 - MER63A DNA MER1_type -9 201 1 278 342 57 25 chr6 626639 626797 -188652757 + L2 LINE L2 2089 2251 -1063 337 339 58 37 chr6 626920 627109 -188652445 - MIR SINE MIR -21 241 49 885 219 59 0 chr6 628151 628370 -188651184 - Tigger6a DNA MER2_type -2 1081 850 4973 40 2 0 chr6 628370 628991 -188650563 - L1P LINE L1 -2696 3450 2829 3541 47 0 0 chr6 628991 629394 -188650160 + L1PA5 LINE L1 5748 6152 -2 2839 240 97 9 chr6 629427 630219 -188649335 - Tigger6a DNA MER2_type -221 862 1 626 320 61 4 chr6 630221 630449 -188649105 + MIR SINE MIR 17 257 -5 749 148 6 42 chr6 630496 630668 -188648886 - MER3 DNA MER1_type 0 209 1 1284 144 42 14 chr6 633442 633657 -188645897 + MER46A DNA MER2_type 1 221 -15 598 225 191 0 chr6 635135 635308 -188644246 - MER58C DNA MER1_type -9 206 1 201 74 0 0 chr6 636406 636433 -188643121 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1221 15 0 0 chr6 636718 636889 -188642665 + L1PA4 LINE L1 6013 6183 0 1890 236 68 23 chr6 637053 637566 -188641988 + MER77 LTR ERV1 60 595 -10 21 57 0 0 chr6 637689 637724 -188641830 + AT_rich Low_complexity Low_complexity 1 35 0 336 111 0 0 chr6 638133 638187 -188641367 + (TG)n Simple_repeat Simple_repeat 2 55 0 405 207 18 36 chr6 638402 638513 -188641041 + L1MC5 LINE L1 7370 7478 -483 1329 112 0 0 chr6 638534 638712 -188640842 + AluSg/x SINE Alu 131 308 -4 379 287 43 28 chr6 638725 638958 -188640596 + L1MC5 LINE L1 7501 7824 -218 2690 23 0 0 chr6 639289 639590 -188639964 + AluY SINE Alu 2 302 -9 1235 105 17 6 chr6 639696 639900 -188639654 - AluSc SINE Alu 0 311 106 24 0 0 0 chr6 639943 639967 -188639587 + AT_rich Low_complexity Low_complexity 1 24 0 275 314 34 25 chr6 644995 645113 -188634441 + MER117 DNA MER1_type 36 154 -43 384 258 273 10 chr6 647239 647437 -188632117 + MIR SINE MIR 13 262 0 185 213 187 27 chr6 647487 647562 -188631992 - MIR SINE MIR -71 191 105 204 40 0 0 chr6 648482 648507 -188631047 + (T)n Simple_repeat Simple_repeat 1 25 0 2315 88 0 3 chr6 649565 649859 -188629695 - AluSx SINE Alu -19 293 1 21 0 0 0 chr6 649954 649975 -188629579 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr6 650210 650234 -188629320 + (A)n Simple_repeat Simple_repeat 1 24 0 772 215 41 0 chr6 650614 650786 -188628768 + LTR37A LTR ERV1 248 426 0 570 287 123 0 chr6 651031 651226 -188628328 - MIR SINE MIR -10 252 34 2358 90 0 19 chr6 654224 654536 -188625018 + AluSg SINE Alu 1 306 -4 180 219 0 0 chr6 654766 654807 -188624747 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 654842 654864 -188624690 + AT_rich Low_complexity Low_complexity 1 22 0 300 307 181 0 chr6 655120 655325 -188624229 - MIR SINE MIR -4 258 17 1914 129 0 60 chr6 657033 657350 -188622204 - AluJb SINE Alu -13 299 2 31 68 0 0 chr6 657707 657766 -188621788 + AT_rich Low_complexity Low_complexity 1 59 0 2242 103 0 6 chr6 658747 659058 -188620496 + AluSc SINE Alu 1 309 0 340 354 31 10 chr6 661391 661607 -188617947 + MIR SINE MIR 3 249 -13 2313 90 7 0 chr6 661618 661918 -188617636 + AluSg SINE Alu 2 303 -7 356 260 103 113 chr6 662496 662722 -188616832 + HAL1 LINE L1 620 844 -1663 3800 136 71 5 chr6 662722 663325 -188616229 - LTR48B LTR ERV1 -1 643 1 356 260 103 113 chr6 663325 663398 -188616156 + HAL1 LINE L1 844 916 -1591 1862 153 24 66 chr6 663461 663841 -188615713 + MLT1B LTR MaLR 25 388 -2 262 284 116 53 chr6 664004 664229 -188615325 + HAL1 LINE L1 2124 2362 -145 555 245 77 77 chr6 664247 664533 -188615021 + MER21B LTR ERV1 5 290 -573 708 196 106 32 chr6 665296 665485 -188614069 + MER21B LTR ERV1 660 862 -1 619 253 32 58 chr6 665495 665807 -188613747 + L1ME LINE L1 812 1115 -5090 278 274 49 20 chr6 665876 665978 -188613576 + L1ME LINE L1 1644 1748 -4648 5909 222 167 31 chr6 665993 668613 -188610941 + L1M4 LINE L1 2392 5368 -778 1156 201 225 0 chr6 668607 668940 -188610614 + L1MC4 LINE L1 6595 7002 -1040 * 674 217 91 11 chr6 668948 669123 -188610431 - L1MC4 LINE L1 -462 7580 7392 765 227 74 29 chr6 669124 669366 -188610188 + L1MC4 LINE L1 7735 7987 -55 323 244 2 0 chr6 669378 669470 -188610084 + L1MC4 LINE L1 7681 8042 0 252 345 101 14 chr6 670361 670500 -188609054 - MIR3 SINE MIR -11 197 47 310 244 49 0 chr6 671075 671157 -188608397 + L2 LINE L2 3223 3308 -5 1799 138 57 27 chr6 671683 671979 -188607575 - AluJo SINE Alu -7 305 1 947 201 0 0 chr6 671986 672155 -188607399 - FAM SINE Alu -6 169 1 22 0 0 0 chr6 673061 673083 -188606471 + AT_rich Low_complexity Low_complexity 1 22 0 244 283 109 36 chr6 673180 673318 -188606236 + MIR3 SINE MIR 38 185 -23 2393 75 0 16 chr6 673994 674299 -188605255 - AluY SINE Alu -11 300 1 2035 140 3 0 chr6 674338 674668 -188604886 + AluSx SINE Alu 1 312 0 2381 91 0 0 chr6 674742 675038 -188604516 + AluSg SINE Alu 1 296 -14 14926 132 27 17 chr6 675764 677484 -188602070 + Tigger1 DNA MER2_type 7 1759 -659 2140 136 0 13 chr6 677484 677800 -188601754 + AluJo SINE Alu 1 312 0 14926 132 27 17 chr6 677800 678466 -188601088 + Tigger1 DNA MER2_type 1759 2417 -1 581 245 153 38 chr6 680341 680688 -188598866 - L1ME4a LINE L1 -202 5919 5533 449 290 60 33 chr6 681377 681560 -188597994 + L2 LINE L2 3126 3313 0 260 27 27 0 chr6 681599 681636 -188597918 + (TA)n Simple_repeat Simple_repeat 2 39 0 2375 98 0 0 chr6 681636 681931 -188597623 - AluSq SINE Alu -18 295 1 236 331 21 14 chr6 682107 682255 -188597299 - L1P LINE L1 -1914 4232 4077 321 182 171 0 chr6 682281 682369 -188597185 - MER106B DNA MER1_type 0 1059 957 12413 199 79 30 chr6 682372 685856 -188593698 + L1PB1 LINE L1 51 3363 -3504 881 118 0 0 chr6 685856 685975 -188593579 + AluSg/x SINE Alu 179 297 -15 12413 199 79 30 chr6 685975 687161 -188592393 + L1PB1 LINE L1 3363 4490 -2377 189 0 0 0 chr6 687161 687182 -188592372 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 12413 199 79 30 chr6 687182 688907 -188590647 + L1PB1 LINE L1 4490 6865 -2 759 298 58 0 chr6 688914 689122 -188590432 + MER58A DNA MER1_type 2 221 -3 1609 140 43 37 chr6 689502 689802 -188589752 - L1MC2 LINE L1 -18 6326 6025 2145 164 118 27 chr6 689802 690326 -188589228 - L1MCa LINE L1 -4142 2284 1713 2936 164 32 26 chr6 690335 690832 -188588722 + MLT2B3 LTR ERVL 16 518 -36 447 19 0 0 chr6 690832 690884 -188588670 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 2936 164 32 26 chr6 690884 690922 -188588632 + MLT2B3 LTR ERVL 518 554 0 1149 205 115 0 chr6 690924 691202 -188588352 - L1MCa LINE L1 -4815 1611 1302 906 201 50 30 chr6 691638 691937 -188587617 + MER2 DNA MER2_type 6 345 0 24 0 0 0 chr6 693444 693468 -188586086 + AT_rich Low_complexity Low_complexity 1 24 0 1751 159 152 42 chr6 693526 693897 -188585657 - Charlie1 DNA MER1_type -1730 1031 702 909 165 0 0 chr6 693897 694030 -188585524 + FLAM_A SINE Alu 1 133 0 1847 134 78 0 chr6 694038 694341 -188585213 + AluSx SINE Alu 1 312 0 1751 159 152 42 chr6 694341 694369 -188585185 - Charlie1 DNA MER1_type -2065 696 578 3146 190 77 31 chr6 694466 694867 -188584687 - L1MCa LINE L1 -4510 1916 1535 194 0 39 0 chr6 694867 694893 -188584661 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3146 190 77 31 chr6 694893 695491 -188584063 - L1MCa LINE L1 -4891 1535 776 891 211 11 6 chr6 695489 695669 -188583885 - L1MCa LINE L1 -6167 259 79 * 641 196 21 21 chr6 695665 695808 -188583746 - L1MCa LINE L1 -6272 154 12 * 2064 112 36 7 chr6 695941 696245 -188583309 + AluSq SINE Alu 1 313 0 1089 135 17 97 chr6 696725 696962 -188582592 - Tigger1 DNA MER2_type -2200 218 1 288 0 0 0 chr6 697676 697708 -188581846 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1410 171 209 31 chr6 697720 698164 -188581390 + MER74A LTR ERVL 34 556 -2 22 35 0 0 chr6 700362 700391 -188579163 + AT_rich Low_complexity Low_complexity 1 29 0 1723 98 0 0 chr6 700515 700730 -188578824 - AluSg SINE Alu -95 215 1 282 281 305 0 chr6 700734 700898 -188578656 - MIR SINE MIR -36 226 13 279 0 0 0 chr6 700898 700929 -188578625 + (CA)n Simple_repeat Simple_repeat 1 31 0 276 255 128 10 chr6 701222 701324 -188578230 + MIR SINE MIR 77 190 -72 26 50 0 0 chr6 701946 701986 -188577568 + AT_rich Low_complexity Low_complexity 1 40 0 358 330 89 65 chr6 702200 702727 -188576827 + L1ME LINE L1 5267 5806 -315 302 253 53 0 chr6 702893 702968 -188576586 - MIR SINE MIR -150 112 34 419 246 123 35 chr6 702994 703197 -188576357 - L1MC5 LINE L1 -30 7931 7711 22 56 0 0 chr6 704478 704514 -188575040 + AT_rich Low_complexity Low_complexity 1 36 0 2428 76 0 3 chr6 705159 705463 -188574091 - AluY SINE Alu -8 303 1 488 174 31 39 chr6 705627 705818 -188573736 + L1MB7 LINE L1 5889 6114 -66 211 338 0 0 chr6 707122 707193 -188572361 + G-rich Low_complexity Low_complexity 6 76 0 225 0 0 0 chr6 708091 708116 -188571438 + (CA)n Simple_repeat Simple_repeat 2 26 0 414 51 0 0 chr6 708833 708892 -188570662 - AluSc SINE Alu -6 303 245 2193 80 35 7 chr6 708939 709225 -188570329 - AluSg SINE Alu -16 294 1 1996 114 10 33 chr6 710132 710438 -188569116 - AluJo SINE Alu -4 308 10 249 269 103 13 chr6 710599 710677 -188568877 - L2 LINE L2 0 3313 3229 * 368 368 162 25 chr6 710675 711522 -188568032 - L2 LINE L2 -1393 1921 959 183 217 0 43 chr6 712034 712080 -188567474 - MIR SINE MIR -15 247 204 1391 226 7 3 chr6 713038 713321 -188566233 + AluJo SINE Alu 1 284 -28 1904 128 24 0 chr6 713392 713681 -188565873 + AluYa5 SINE Alu 1 296 -15 308 161 54 0 chr6 713936 713992 -188565562 - L2 LINE L2 0 3272 3214 415 174 14 0 chr6 714231 714300 -188565254 - MER8 DNA MER2_type 0 239 170 * 2206 144 108 2 chr6 714297 714694 -188564860 + Tigger2 DNA MER2_type 2280 2718 0 2867 161 205 20 chr6 717022 717631 -188561923 + pTR5 LTR ERV1 1717 2438 0 523 138 92 28 chr6 717642 717751 -188561803 + MER53 DNA DNA 72 187 -2 1067 288 151 12 chr6 717754 718438 -188561116 - L2 LINE L2 -1521 1793 1015 467 219 89 0 chr6 718514 718637 -188560917 - MER94 DNA DNA 0 134 1 2258 98 7 7 chr6 718668 718974 -188560580 + AluSc SINE Alu 1 306 -3 252 346 48 18 chr6 719729 719957 -188559597 + ERVL LTR ERVL 4410 4644 -1120 376 321 54 29 chr6 720200 720480 -188559074 + ERVL LTR ERVL 5094 5380 -384 464 244 289 29 chr6 720662 720977 -188558577 + LTR16C LTR ERVL 85 481 -10 1395 165 4 16 chr6 721041 721283 -188558271 - AluJo SINE Alu -20 292 54 308 205 212 40 chr6 722313 722464 -188557090 + L2 LINE L2 3126 3302 -11 284 339 46 9 chr6 724525 724634 -188554920 + MIR3 SINE MIR 87 199 -9 2421 97 0 0 chr6 724658 724969 -188554585 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 727545 727567 -188551987 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 727937 727976 -188551578 + AT_rich Low_complexity Low_complexity 1 39 0 426 318 17 6 chr6 728796 728969 -188550585 + (CA)n Simple_repeat Simple_repeat 1 175 0 192 253 0 0 chr6 728971 729046 -188550508 + (CATA)n Simple_repeat Simple_repeat 4 78 0 219 259 0 0 chr6 729080 729165 -188550389 + (CA)n Simple_repeat Simple_repeat 1 85 0 22 35 0 0 chr6 732218 732247 -188547307 + AT_rich Low_complexity Low_complexity 1 29 0 5178 20 3 3 chr6 734162 734753 -188544801 - L1PA3 LINE L1 0 6155 5565 339 231 13 0 chr6 735201 735279 -188544275 - MIR3 SINE MIR -17 191 113 260 250 0 0 chr6 735668 735732 -188543822 + MLT1I LTR MaLR 346 409 0 343 246 69 23 chr6 736611 736741 -188542813 + L2 LINE L2 3137 3272 0 508 314 42 29 chr6 738777 739162 -188540392 - L2 LINE L2 0 3313 2924 318 328 154 17 chr6 739221 739636 -188539918 - L2 LINE L2 -369 2945 2474 550 254 109 16 chr6 739719 739912 -188539642 + MIR SINE MIR 52 262 0 526 299 57 10 chr6 739925 740119 -188539435 - L2 LINE L2 -874 2440 2238 251 290 107 0 chr6 740155 740286 -188539268 - L2 LINE L2 -1194 2120 1976 2429 88 0 3 chr6 740838 741144 -188538410 - AluSq SINE Alu -8 305 1 1241 185 161 24 chr6 741173 741514 -188538040 + MLT1B LTR MaLR 3 390 0 241 291 134 34 chr6 741999 742267 -188537287 - L2 LINE L2 -84 3229 2935 211 328 74 0 chr6 742337 742459 -188537095 - L2 LINE L2 -504 2810 2680 1322 166 200 10 chr6 742694 742805 -188536749 - MER7A DNA MER2_type -2692 346 257 1489 102 56 0 chr6 742805 743020 -188536534 - MER30 DNA MER1_type -2 228 2 1322 166 200 10 chr6 743020 743198 -188536356 - MER7A DNA MER2_type -2781 257 4 280 274 168 58 chr6 743217 743527 -188536027 - L2 LINE L2 -1318 1996 1653 664 213 27 19 chr6 745039 745218 -188534336 - MER5A DNA MER1_type 0 189 3 2616 68 0 0 chr6 745820 746129 -188533425 - AluY SINE Alu -2 309 1 366 284 31 89 chr6 746430 746722 -188532832 + LTR16C LTR ERVL 108 382 -109 3104 168 2 0 chr6 747046 747594 -188531960 - L1P LINE L1 -1610 4536 3988 5713 139 8 6 chr6 747597 748710 -188530844 + L1PA14 LINE L1 5047 6161 0 989 145 6 52 chr6 748710 748882 -188530672 + AluJb SINE Alu 132 295 -17 1501 172 41 28 chr6 748958 749249 -188530305 - AluJo SINE Alu -15 297 3 219 250 0 0 chr6 749319 749387 -188530167 + CT-rich Low_complexity Low_complexity 5 72 0 234 0 0 0 chr6 751797 751823 -188527731 + (GA)n Simple_repeat Simple_repeat 1 26 0 470 336 38 19 chr6 754444 754655 -188524899 - MIR SINE MIR -26 236 22 555 260 19 7 chr6 754748 754902 -188524652 + L2 LINE L2 3153 3308 -5 520 304 42 51 chr6 756445 756896 -188522658 - L2 LINE L2 0 3313 2867 345 273 50 22 chr6 757156 757295 -188522259 - MARNA DNA Mariner -33 553 411 2075 96 15 4 chr6 757295 757567 -188521987 - AluSq SINE Alu -12 301 27 925 138 0 0 chr6 757889 758019 -188521535 + AluSp SINE Alu 1 130 -183 2440 48 3 0 chr6 758119 758411 -188521143 - AluY SINE Alu -18 293 1 35 41 0 0 chr6 760058 760107 -188519447 + AT_rich Low_complexity Low_complexity 1 49 0 950 295 102 31 chr6 760354 760745 -188518809 - L1ME3 LINE L1 -277 5885 5437 2203 132 3 0 chr6 760745 761233 -188518321 - AluSq SINE Alu 0 313 1 950 295 102 31 chr6 761233 761427 -188518127 - L1ME3 LINE L1 -725 5437 5258 881 136 65 0 chr6 761448 761602 -188517952 - Tigger1 DNA MER2_type 0 2418 2255 260 174 31 10 chr6 761607 761705 -188517849 + (TA)n Simple_repeat Simple_repeat 1 100 0 12537 125 15 40 chr6 761711 761912 -188517642 - Tigger1 DNA MER2_type -196 2222 2017 1913 103 3 94 chr6 761912 762231 -188517323 - AluSq SINE Alu -23 290 1 12537 125 15 40 chr6 762231 764330 -188515224 - Tigger1 DNA MER2_type -401 2017 1 652 306 52 29 chr6 764443 764887 -188514667 - L1ME3 LINE L1 -1103 5043 4590 417 246 84 14 chr6 765084 765226 -188514328 - MIR SINE MIR 0 262 111 308 336 55 48 chr6 765226 765372 -188514182 + L1ME2 LINE L1 5731 5877 -287 1209 215 27 5 chr6 765459 765678 -188513876 + MER58A DNA MER1_type 1 224 0 934 153 23 6 chr6 765949 766125 -188513429 + L1MA4 LINE L1 6118 6296 -4 2235 228 82 14 chr6 766460 767047 -188512507 + L1ME3 LINE L1 5536 6162 0 1234 116 32 26 chr6 767184 767373 -188512181 + L1PA15 LINE L1 5969 6158 -7 194 150 25 0 chr6 768004 768044 -188511510 + (TA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 768044 768077 -188511477 + (TC)n Simple_repeat Simple_repeat 2 34 0 229 318 120 54 chr6 768331 768573 -188510981 + L2 LINE L2 2659 2916 -398 22 0 0 0 chr6 769666 769688 -188509866 + AT_rich Low_complexity Low_complexity 1 22 0 761 225 34 49 chr6 771787 772054 -188507500 - LTR13 LTR ERVK -744 263 1 229 191 95 16 chr6 772112 772175 -188507379 + LTR13 LTR ERVK 242 309 -698 822 295 93 42 chr6 772186 772391 -188507163 - L1M4 LINE L1 -1503 4643 4450 2400 72 7 0 chr6 772391 772683 -188506871 - AluSp SINE Alu -19 294 1 822 295 93 42 chr6 772683 773220 -188506334 - L1M4 LINE L1 -1696 4450 3863 261 114 63 13 chr6 774101 774180 -188505374 + GA-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chr6 774501 774524 -188505030 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2107 128 0 0 chr6 774526 774808 -188504746 - AluSq SINE Alu -31 282 1 228 176 0 0 chr6 775454 775505 -188504049 + LTR33 LTR ERVL 1 51 -470 310 42 42 0 chr6 775728 775776 -188503778 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 299 232 14 0 chr6 775857 775926 -188503628 + LTR33 LTR ERVL 426 495 -26 711 285 38 29 chr6 777188 777528 -188502026 - L1M4 LINE L1 -2703 3443 3101 650 267 32 45 chr6 777575 777822 -188501732 + LTR33 LTR ERVL 278 521 0 196 229 0 100 chr6 778263 778333 -188501221 - L2 LINE L2 -93 3220 3158 1602 223 31 77 chr6 778421 778942 -188500612 + MLT1D LTR MaLR 9 505 0 238 299 43 104 chr6 778943 779174 -188500380 - L2 LINE L2 -403 2911 2695 307 287 85 53 chr6 780672 780860 -188498694 + L1ME4a LINE L1 5926 6119 -2 2379 55 3 39 chr6 780896 781206 -188498348 + AluY SINE Alu 1 299 -12 1640 177 88 9 chr6 781547 781864 -188497690 + MLT2C1 LTR ERVL 8 349 -48 1907 154 50 71 chr6 781919 782301 -188497253 - THE1C LTR MaLR -1 374 1 293 130 19 37 chr6 782380 782434 -188497120 + MLT2C1 LTR ERVL 468 520 0 762 193 66 0 chr6 782435 782601 -188496953 + MLT1D-int LTR MaLR 2 178 -1193 1735 57 0 13 chr6 782620 782850 -188496704 + AluY SINE Alu 1 227 -84 263 320 69 15 chr6 782851 783054 -188496500 + MLT1C LTR MaLR 247 460 -7 237 216 157 0 chr6 784487 784538 -188495016 - L2 LINE L2 -16 3297 3239 699 256 125 38 chr6 784602 784616 -188494938 - LTR16C LTR ERVL 0 491 480 1647 201 175 24 chr6 784616 785068 -188494486 + MLT2B1 LTR ERVL 1 520 0 699 256 125 38 chr6 785068 785373 -188494181 - LTR16C LTR ERVL -11 480 144 2199 100 0 34 chr6 785846 786166 -188493388 - AluSx SINE Alu -3 309 1 863 261 114 19 chr6 786166 786491 -188493063 + MLT1J LTR MaLR 25 380 -131 314 281 0 12 chr6 789765 789865 -188489689 + CT-rich Low_complexity Low_complexity 1 98 0 1723 229 31 52 chr6 841387 841947 -188437607 - L2 LINE L2 -3 3310 2777 2073 94 3 3 chr6 841947 842234 -188437320 - AluSg SINE Alu -23 287 1 1723 229 31 52 chr6 842234 842302 -188437252 - L2 LINE L2 -536 2777 2709 618 224 175 6 chr6 843213 843396 -188436158 + MIR SINE MIR 37 250 -12 1264 242 58 22 chr6 845944 846304 -188433250 - MLT1A2 LTR MaLR -1 373 1 1923 119 172 107 chr6 846485 846932 -188432622 - LTR26E LTR ERV1 -146 476 1 230 368 47 74 chr6 847285 847543 -188432011 - L2 LINE L2 0 3272 3022 284 150 27 16 chr6 847743 847816 -188431738 - L1MC2 LINE L1 0 6333 6256 4783 158 34 19 chr6 847819 848703 -188430851 + L1MC1 LINE L1 5319 6215 -118 4030 128 16 19 chr6 849432 850065 -188429489 + MER41B LTR ERV1 1 631 -4 1164 179 24 8 chr6 850728 850979 -188428575 + L1MB7 LINE L1 5911 6165 -19 507 174 24 0 chr6 851028 851155 -188428399 + L1M4 LINE L1 5202 5331 -832 365 286 45 9 chr6 851162 851274 -188428280 - L1MC4 LINE L1 -1341 6701 6586 358 291 0 0 chr6 851268 851347 -188428207 + L1MC4 LINE L1 6614 6692 -1350 * 674 45 0 0 chr6 851348 851436 -188428118 + L1MC/D LINE L1 5360 5447 -897 1654 161 42 98 chr6 851495 851905 -188427649 - MLT1B LTR MaLR -3 387 1 668 119 198 0 chr6 851905 852031 -188427523 + L1MC/D LINE L1 5617 5767 -577 1619 223 95 63 chr6 853609 854134 -188425420 - MLT1F LTR MaLR 0 542 1 302 0 26 0 chr6 856680 856718 -188422836 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3095 147 106 19 chr6 856947 857539 -188422015 + MER73 LTR ERVL 1 644 0 13984 75 3 8 chr6 857764 857954 -188421600 + L1PA7 LINE L1 3491 3680 -2474 231 36 0 0 chr6 857954 857982 -188421572 + (CA)n Simple_repeat Simple_repeat 1 28 0 13984 75 3 8 chr6 857982 858952 -188420602 + L1PA7 LINE L1 3680 4653 -1501 2781 6 0 9 chr6 858952 859268 -188420286 + AluYb8 SINE Alu 1 313 -5 13984 75 3 8 chr6 859268 860782 -188418772 + L1PA7 LINE L1 4653 6149 -5 1687 186 73 35 chr6 860897 861268 -188418286 + MLT1B LTR MaLR 6 390 0 444 224 154 21 chr6 861291 861434 -188418120 + MLT1H LTR MaLR 11 172 -377 298 286 214 0 chr6 861535 861661 -188417893 + MLT1H LTR MaLR 392 544 -5 192 389 18 9 chr6 864059 864172 -188415382 - MIR SINE MIR -74 134 21 2465 53 0 0 chr6 864459 864761 -188414793 - AluY SINE Alu -9 302 1 26 30 0 0 chr6 864988 865021 -188414533 + AT_rich Low_complexity Low_complexity 1 33 0 540 126 0 0 chr6 865355 865442 -188414112 + (TCCA)n Simple_repeat Simple_repeat 2 88 0 920 143 6 0 chr6 865453 865621 -188413933 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 579 213 0 0 chr6 865632 865773 -188413781 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 819 183 0 0 chr6 865784 865959 -188413595 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 413 264 0 85 chr6 865962 866091 -188413463 - L2 LINE L2 -5 3308 3191 208 260 0 0 chr6 866779 866829 -188412725 + L2 LINE L2 3258 3307 -6 2924 156 112 55 chr6 867600 867674 -188411880 - LTR8A LTR ERV1 0 727 659 1971 75 39 29 chr6 867674 867975 -188411579 + AluY SINE Alu 1 304 0 2924 156 112 55 chr6 867975 868587 -188410967 - LTR8A LTR ERV1 -68 659 1 249 33 0 0 chr6 869219 869249 -188410305 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 872373 872404 -188407150 + AT_rich Low_complexity Low_complexity 1 31 0 552 194 0 0 chr6 872420 872518 -188407036 + FLAM_C SINE Alu 26 123 -20 2107 94 3 23 chr6 873181 873488 -188406066 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr6 875098 875126 -188404428 + AT_rich Low_complexity Low_complexity 1 28 0 2182 88 3 10 chr6 875239 875535 -188404019 - AluSp SINE Alu -19 294 1 2500 34 0 0 chr6 875846 876140 -188403414 + AluY SINE Alu 1 294 -17 263 342 221 9 chr6 876232 876454 -188403100 - L3 LINE CR1 -5 1572 1304 241 263 288 0 chr6 877915 877995 -188401559 - L2 LINE L2 0 3313 3211 2082 201 21 31 chr6 878411 878893 -188400661 - L1MB7 LINE L1 -7 6177 5701 1918 159 31 3 chr6 878900 879227 -188400327 + Tigger4(Zombi) DNA MER2_type 1 336 -2395 1938 100 0 25 chr6 879229 879510 -188400044 + Tigger4(Zombi) DNA MER2_type 2457 2730 -1 2347 157 54 25 chr6 879511 879987 -188399567 - L1MB7 LINE L1 -489 5689 5196 2117 114 7 0 chr6 879987 880286 -188399268 - AluSx SINE Alu -9 303 3 2347 157 54 25 chr6 880286 880371 -188399183 - L1MB7 LINE L1 -982 5196 5115 2179 138 62 8 chr6 881224 881593 -188397961 + MLT1B LTR MaLR 1 389 -1 276 288 129 30 chr6 881755 881939 -188397615 - MIR SINE MIR -50 212 14 22 35 0 0 chr6 882175 882204 -188397350 + AT_rich Low_complexity Low_complexity 1 29 0 267 214 36 12 chr6 883446 883530 -188396024 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 231 309 12 24 chr6 886959 887043 -188392511 + MIR3 SINE MIR 115 197 -11 313 262 87 10 chr6 887047 887150 -188392404 + L1MC4 LINE L1 7928 8038 -4 3063 196 97 68 chr6 887254 888093 -188391461 + MER21B LTR ERV1 1 863 0 190 229 0 0 chr6 888433 888468 -188391086 - L2 LINE L2 -1433 1881 1847 197 244 37 6 chr6 888486 888554 -188391000 - MIR SINE MIR -56 152 81 249 33 0 0 chr6 889327 889357 -188390197 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr6 889955 889990 -188389564 + AT_rich Low_complexity Low_complexity 1 35 0 279 339 42 36 chr6 891382 891550 -188388004 - MIR SINE MIR -73 189 21 180 0 0 0 chr6 893692 893712 -188385842 + (CATA)n Simple_repeat Simple_repeat 4 23 0 874 189 83 152 chr6 893773 893977 -188385577 - MLT1A2 LTR MaLR -8 382 218 369 0 0 0 chr6 893977 894018 -188385536 + (TG)n Simple_repeat Simple_repeat 1 41 0 874 189 83 152 chr6 894018 894221 -188385333 - MLT1A2 LTR MaLR -172 218 3 1869 132 0 4 chr6 894326 894670 -188384884 - AluY SINE Alu 0 343 1 1779 172 67 6 chr6 895030 895390 -188384164 - L1MB3 LINE L1 -9 6174 5793 644 178 159 25 chr6 895418 895581 -188383973 + MER58A DNA MER1_type 40 224 0 23 54 0 0 chr6 896553 896590 -188382964 + AT_rich Low_complexity Low_complexity 1 37 0 1103 191 9 43 chr6 897267 897498 -188382056 + MER58A DNA MER1_type 2 224 0 1971 121 0 0 chr6 897768 898078 -188381476 - AluSx SINE Alu 0 310 1 272 313 0 12 chr6 898319 898399 -188381155 + MIR SINE MIR 23 101 -107 269 237 97 72 chr6 898737 898920 -188380634 - MLT1J2 LTR MaLR -215 231 44 552 258 129 15 chr6 899452 899716 -188379838 + LTR50 LTR ERVL 502 795 0 225 291 80 117 chr6 900425 900638 -188378916 + L2 LINE L2 3063 3267 -5 264 214 0 43 chr6 902419 902489 -188377065 + (CACCAT)n Simple_repeat Simple_repeat 5 71 0 2137 114 0 13 chr6 902674 902982 -188376572 - AluSg SINE Alu -2 308 5 1505 123 35 15 chr6 903053 903313 -188376241 + L1MA5A LINE L1 6030 6294 -3 324 211 0 0 chr6 905075 905132 -188374422 - FLAM_A SINE Alu -75 57 1 208 318 34 23 chr6 905861 905949 -188373605 + MIR SINE MIR 36 124 -84 195 297 122 0 chr6 905980 906054 -188373500 - L2 LINE L2 -32 3281 3199 623 89 0 10 chr6 906057 906158 -188373396 + (GA)n Simple_repeat Simple_repeat 1 100 0 547 250 128 0 chr6 906315 906503 -188373051 - MER5C DNA MER1_type 0 324 113 268 229 0 48 chr6 906515 906598 -188372956 + CT-rich Low_complexity Low_complexity 4 82 0 3107 254 155 44 chr6 906707 907500 -188372054 + L1MC4 LINE L1 6469 7172 -870 2207 117 43 81 chr6 907500 907887 -188371667 + MSTB LTR MaLR 1 401 -25 314 0 49 0 chr6 907887 907928 -188371626 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1755 122 4 11 chr6 907933 908211 -188371343 - AluSq SINE Alu -37 276 1 2144 121 0 3 chr6 908218 908532 -188371022 - AluSq SINE Alu 0 313 1 2207 117 43 81 chr6 908532 908573 -188370981 + MSTB LTR MaLR 411 426 0 3107 254 155 44 chr6 908573 909195 -188370359 + L1MC4 LINE L1 7172 8042 0 270 104 0 62 chr6 909197 909245 -188370309 - MER5C DNA MER1_type -201 123 79 1372 166 22 25 chr6 910453 910731 -188368823 - AluJo SINE Alu -25 287 11 677 199 46 7 chr6 911009 911160 -188368394 - MER45A DNA AcHobo 0 178 22 2005 87 11 7 chr6 911204 911480 -188368074 + AluSx SINE Alu 24 300 -12 940 286 74 25 chr6 912101 912534 -188367020 + L1ME3A LINE L1 5513 5966 -204 332 45 76 0 chr6 912662 912728 -188366826 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 309 343 63 58 chr6 912728 913110 -188366444 - L1MEd LINE L1 -4935 1184 801 612 95 71 0 chr6 913110 913278 -188366276 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 528 273 122 65 chr6 913532 913917 -188365637 - MLT1J LTR MaLR 0 511 105 331 244 96 77 chr6 914264 914751 -188364803 - L1MC5 LINE L1 -183 8058 1922 * 414 145 63 5 chr6 914334 914752 -188364802 + (TA)n Simple_repeat Simple_repeat 1 442 0 315 244 26 52 chr6 914746 914861 -188364693 - L1MC5 LINE L1 -4335 2091 1980 * 310 116 70 23 chr6 914776 914948 -188364606 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 306 206 89 89 chr6 914861 915041 -188364513 + L1MC5 LINE L1 7576 7755 -206 * 240 111 89 0 chr6 914921 915056 -188364498 + (TATAA)n Simple_repeat Simple_repeat 5 151 0 * 205 200 40 13 chr6 915043 915118 -188364436 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 * 1248 244 58 22 chr6 917120 917480 -188362074 + MLT1A2 LTR MaLR 1 373 -1 520 229 175 6 chr6 919478 919661 -188359893 - MIR SINE MIR -12 250 37 231 36 0 0 chr6 920643 920671 -188358883 + (GA)n Simple_repeat Simple_repeat 2 29 0 234 231 0 0 chr6 921378 921430 -188358124 + C-rich Low_complexity Low_complexity 1 52 0 198 309 99 66 chr6 921852 922004 -188357550 - L2 LINE L2 -5 3267 3111 292 327 59 41 chr6 922129 922349 -188357205 - MIR SINE MIR -35 227 4 1991 92 0 11 chr6 922662 922923 -188356631 - AluSg SINE Alu -14 296 39 2090 114 0 46 chr6 923940 924247 -188355307 - AluSg SINE Alu -17 293 1 3356 108 124 2 chr6 924291 924809 -188354745 + LTR12 LTR ERV1 1 581 -133 232 353 0 20 chr6 925097 925199 -188354355 + MIR SINE MIR 84 183 -79 2193 138 80 31 chr6 925319 925732 -188353822 + Tigger2a DNA MER2_type 2 434 0 192 297 47 0 chr6 925805 925869 -188353685 - L2 LINE L2 -1 3312 3246 222 317 55 35 chr6 925994 926139 -188353415 - L2 LINE L2 -191 3081 2934 2216 191 33 9 chr6 926301 926751 -188352803 - LOR1b LTR ERV1 0 461 1 4393 108 68 85 chr6 928678 929477 -188350077 + LTR1 LTR ERV1 1 785 0 16050 154 61 27 chr6 929477 932397 -188347157 + HUERS-P2 LTR ERV1 1 3088 0 4084 121 74 74 chr6 932440 933225 -188346329 + LTR1 LTR ERV1 1 785 0 2155 228 34 15 chr6 934399 934935 -188344619 + L1MC3 LINE L1 7240 7785 0 567 310 31 31 chr6 934985 935211 -188344343 - MIR SINE MIR -1 261 36 301 290 140 11 chr6 935365 935551 -188344003 + L1ME3 LINE L1 416 625 -6096 528 297 76 42 chr6 936114 936564 -188342990 + L1ME3 LINE L1 1314 1747 -4793 2695 110 0 3 chr6 936564 936929 -188342625 - THE1B LTR MaLR 0 364 1 528 297 76 42 chr6 936929 937015 -188342539 + L1ME3 LINE L1 1747 1872 -4668 5106 45 0 0 chr6 937015 937619 -188341935 + L1PA5 LINE L1 5550 6153 -1 528 297 76 42 chr6 937619 937634 -188341920 + L1ME3 LINE L1 1872 1885 -4655 * 1834 265 101 39 chr6 937630 938134 -188341420 + L1ME3 LINE L1 4147 4619 -1937 2461 54 0 7 chr6 938134 938431 -188341123 + AluY SINE Alu 1 295 -16 1834 265 101 39 chr6 938431 938975 -188340579 + L1ME3 LINE L1 4619 6526 -30 375 289 86 13 chr6 939046 939347 -188340207 + L1ME LINE L1 3316 3638 -2902 22 0 0 0 chr6 939860 939882 -188339672 + AT_rich Low_complexity Low_complexity 1 22 0 6132 43 1 0 chr6 940072 940796 -188338758 - L1PA7 LINE L1 -11 6143 5419 1353 182 26 45 chr6 940796 941065 -188338489 - AluJb SINE Alu -35 277 14 327 274 65 38 chr6 941118 941304 -188338250 + L1ME LINE L1 5596 5786 -754 290 257 105 66 chr6 941500 941652 -188337902 + L1ME LINE L1 5940 6097 -467 234 0 0 0 chr6 941994 942020 -188337534 + (A)n Simple_repeat Simple_repeat 1 26 0 197 327 106 10 chr6 942542 942646 -188336908 - L2 LINE L2 -8 3264 3151 333 323 158 30 chr6 942877 943041 -188336513 - MER91A DNA MER1_type -11 185 1 1604 216 8 14 chr6 944480 944836 -188334718 - L1MC1 LINE L1 -1 6332 5979 239 170 19 19 chr6 944876 944929 -188334625 - L1MC1 LINE L1 -360 5984 5932 476 163 8 24 chr6 945599 945722 -188333832 + CT-rich Low_complexity Low_complexity 3 123 0 647 193 6 28 chr6 945800 945981 -188333573 + CT-rich Low_complexity Low_complexity 2 178 0 324 284 28 74 chr6 946471 946647 -188332907 - MIR3 SINE MIR -25 183 16 1510 180 82 0 chr6 946684 947051 -188332503 + MER74A LTR ERVL 132 528 -30 317 277 67 8 chr6 947634 947753 -188331801 + MIR SINE MIR 21 146 -116 347 246 99 28 chr6 949668 949810 -188329744 + MIR SINE MIR 34 185 -77 207 213 0 49 chr6 950171 950232 -188329322 + MIR SINE MIR 89 146 -62 716 189 23 34 chr6 950284 950339 -188329215 - MIR SINE MIR -37 225 171 2393 150 61 0 chr6 950339 950746 -188328808 - MSTB1 LTR MaLR 0 432 1 716 189 23 34 chr6 950746 950865 -188328689 - MIR SINE MIR -91 171 53 247 234 35 127 chr6 952117 952314 -188327240 - MER112 DNA MER1_type -48 212 34 2105 113 0 7 chr6 952314 952597 -188326957 + AluY SINE Alu 1 281 -30 186 233 0 0 chr6 954059 954119 -188325435 + (TA)n Simple_repeat Simple_repeat 1 60 0 58 54 0 0 chr6 954127 954220 -188325334 + AT_rich Low_complexity Low_complexity 1 93 0 486 219 47 72 chr6 954227 954505 -188325049 - L1MC5 LINE L1 -184 7777 7507 893 258 30 8 chr6 954523 954790 -188324764 - MER33 DNA MER1_type -30 294 22 488 314 71 25 chr6 955285 955610 -188323944 - L2 LINE L2 0 3313 2974 3051 296 116 16 chr6 955728 957474 -188322080 - L2 LINE L2 -1076 2238 319 1117 152 148 9 chr6 957524 957754 -188321800 - L1MB8 LINE L1 -60 6118 5857 21 36 0 0 chr6 958057 958085 -188321469 + AT_rich Low_complexity Low_complexity 1 28 0 254 324 47 7 chr6 958433 958581 -188320973 + L1ME LINE L1 5757 5910 -211 192 83 0 56 chr6 959708 959744 -188319810 - L2 LINE L2 0 3272 3239 349 266 87 35 chr6 960888 961117 -188318437 - L1ME4a LINE L1 -252 5869 5629 1465 257 74 4 chr6 963589 964060 -188315494 + MLT1D LTR MaLR 2 505 0 2276 101 0 0 chr6 964708 964996 -188314558 + AluSc SINE Alu 1 288 -21 212 357 0 0 chr6 965233 965303 -188314251 + MIR SINE MIR 45 114 -148 388 323 52 13 chr6 965494 965649 -188313905 - MIR SINE MIR -100 162 2 383 333 78 16 chr6 966511 966703 -188312851 - MIR SINE MIR -16 246 43 857 189 111 75 chr6 967800 968106 -188311448 + MER33 DNA MER1_type 7 323 -1 180 77 0 0 chr6 972121 972147 -188307407 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 279 245 128 21 chr6 973044 973232 -188306322 + L1ME4a LINE L1 5742 5949 -172 189 274 16 0 chr6 974612 974674 -188304880 + MIR3 SINE MIR 103 165 -43 1771 151 15 8 chr6 974832 975097 -188304457 - AluJb SINE Alu -18 294 28 388 306 141 15 chr6 975761 975960 -188303594 + HAL1 LINE L1 286 509 -1998 1785 159 32 155 chr6 976397 976951 -188302603 + MER66B LTR ERV1 1 486 0 248 289 39 0 chr6 976990 977094 -188302460 + HAL1 LINE L1 991 1098 -1409 1017 193 133 9 chr6 977095 977328 -188302226 + L1M4c LINE L1 3 264 -6120 2304 80 3 13 chr6 977695 977994 -188301560 - AluY SINE Alu -15 296 1 1108 263 117 52 chr6 978465 979055 -188300499 - HAL1 LINE L1 -644 1863 1236 2278 152 49 0 chr6 979774 980143 -188299411 - MLT1B LTR MaLR -3 387 1 549 211 75 25 chr6 980657 980818 -188298736 - MER5B DNA MER1_type -5 173 5 204 267 17 17 chr6 980913 980973 -188298581 + L2 LINE L2 3138 3197 -75 1645 161 46 14 chr6 981155 981435 -188298119 + AluJo SINE Alu 1 289 -23 29 28 0 0 chr6 981753 981789 -188297765 + AT_rich Low_complexity Low_complexity 1 36 0 2706 97 11 0 chr6 981956 982317 -188297237 - L1PB1 LINE L1 -5 6146 5782 239 77 0 26 chr6 982317 982356 -188297198 + (TA)n Simple_repeat Simple_repeat 1 38 0 298 228 65 11 chr6 982364 982456 -188297098 - L1MC4 LINE L1 -1343 6699 6603 228 268 0 31 chr6 982461 982558 -188296996 - L1MC4 LINE L1 -1340 6702 6609 5799 161 8 26 chr6 982597 984303 -188295251 - L1P5 LINE L1 -360 5791 4121 9331 152 48 8 chr6 984331 985219 -188294335 - L1PBa LINE L1 -2508 4354 3503 2485 91 0 0 chr6 985219 985527 -188294027 - AluY SINE Alu -1 310 3 9331 152 48 8 chr6 985527 987439 -188292115 - L1PBa LINE L1 -3359 3503 1441 2607 141 19 2 chr6 987436 987854 -188291700 - L1PBa LINE L1 -6436 427 3 * 2235 92 30 0 chr6 990478 990773 -188288781 - AluSq SINE Alu -9 304 1 525 287 106 11 chr6 990829 991017 -188288537 - MIR SINE MIR -27 235 30 276 308 115 20 chr6 991074 991266 -188288288 + L3b LINE CR1 1123 1346 -237 1661 129 47 8 chr6 991266 991521 -188288033 + AluSx SINE Alu 39 303 -9 276 308 115 20 chr6 991521 991581 -188287973 + L3b LINE CR1 1346 1399 -184 2458 55 0 19 chr6 991621 991928 -188287626 + AluY SINE Alu 1 301 -10 15722 98 3 2 chr6 993295 996189 -188283365 - L1PA8 LINE L1 0 6172 3275 1513 209 6 3 chr6 996632 996958 -188282596 - L1M4 LINE L1 -1034 5112 4786 532 184 9 9 chr6 996961 997075 -188282479 + L1MC/D LINE L1 2297 2410 -3974 311 200 12 12 chr6 997216 997301 -188282253 + L1MC/D LINE L1 2474 2558 -3824 2894 233 109 23 chr6 997331 997664 -188281890 + L1MC/D LINE L1 2696 2999 -3383 2945 149 2 7 chr6 997664 998094 -188281460 - MSTA LTR MaLR 0 428 1 2894 233 109 23 chr6 998094 998790 -188280764 + L1MC/D LINE L1 2999 3813 -2569 1188 96 0 0 chr6 998790 998936 -188280618 + AluY SINE Alu 1 146 -165 1354 188 49 62 chr6 998936 999260 -188280294 + THE1C LTR MaLR 56 375 0 4716 219 27 16 chr6 999260 1000474 -188279080 + L1MC/D LINE L1 4363 5589 -793 263 230 50 50 chr6 1000690 1000790 -188278764 + L1MC/D LINE L1 6024 6123 -1921 632 284 72 55 chr6 1001027 1002059 -188277495 + L1ME3A LINE L1 4906 5927 -243 462 155 54 0 chr6 1002152 1002320 -188277234 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 212 158 18 0 chr6 1002341 1002398 -188277156 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 556 163 29 6 chr6 1002428 1002600 -188276954 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 987 254 75 18 chr6 1003071 1003460 -188276094 - LTR16A LTR ERVL 0 450 40 1919 182 28 23 chr6 1004050 1004485 -188275069 + L1MB7 LINE L1 5748 6184 0 216 218 36 0 chr6 1004986 1005041 -188274513 + L2 LINE L2 3216 3272 0 186 244 0 0 chr6 1005321 1005362 -188274192 - L2 LINE L2 -5 3308 3268 * 544 239 158 16 chr6 1005328 1005512 -188274042 - MIR SINE MIR -6 256 47 1551 194 56 48 chr6 1006148 1006525 -188273029 - MLT1B LTR MaLR -8 382 3 3197 176 125 3 chr6 1006757 1007421 -188272133 - MER49 LTR ERV1 0 923 179 300 27 0 0 chr6 1008766 1008803 -188270751 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 426 234 71 26 chr6 1011157 1011344 -188268210 - L1MC4a LINE L1 0 7995 7623 491 217 11 11 chr6 1011359 1011539 -188268015 + CT-rich Low_complexity Low_complexity 1 180 0 1612 121 0 0 chr6 1012921 1013145 -188266409 - AluSg/x SINE Alu -4 308 85 339 78 0 0 chr6 1013328 1013379 -188266175 + (CA)n Simple_repeat Simple_repeat 1 51 0 1289 245 233 70 chr6 1013954 1014894 -188264660 + L1MC4 LINE L1 6716 7808 0 1405 121 9 23 chr6 1015089 1015304 -188264250 + AluJo SINE Alu 58 269 -43 456 305 34 51 chr6 1017020 1017197 -188262357 - MIR3 SINE MIR -2 206 33 198 0 0 0 chr6 1017362 1017384 -188262170 + (CA)n Simple_repeat Simple_repeat 2 23 0 4024 163 40 19 chr6 1017384 1018145 -188261409 - L1MB3 LINE L1 -27 6156 5377 350 185 12 0 chr6 1018775 1018856 -188260698 + CT-rich Low_complexity Low_complexity 4 85 0 1760 209 57 27 chr6 1020155 1020595 -188258959 - MLT1D LTR MaLR -2 503 51 270 0 0 0 chr6 1020610 1020640 -188258914 + (TG)n Simple_repeat Simple_repeat 1 30 0 1129 226 66 8 chr6 1022700 1022957 -188256597 + MLT1A1 LTR MaLR 70 341 -24 1383 119 0 0 chr6 1022957 1023159 -188256395 - L1PA8 LINE L1 -867 5279 5078 6764 72 7 9 chr6 1023159 1024052 -188255502 + L1PA8 LINE L1 5276 6172 0 264 224 0 0 chr6 1024087 1024136 -188255418 + MLT1A1 LTR MaLR 315 363 -2 21 0 0 0 chr6 1024565 1024586 -188254968 + AT_rich Low_complexity Low_complexity 1 21 0 296 257 82 70 chr6 1025321 1025492 -188254062 - MER5B DNA MER1_type -2 176 4 * 526 279 84 44 chr6 1025492 1025739 -188253815 + MIR SINE MIR 7 261 -1 188 302 16 101 chr6 1027006 1027135 -188252419 - MIR3 SINE MIR -6 202 85 351 329 90 26 chr6 1027195 1027350 -188252204 - L2 LINE L2 0 3272 3108 421 288 79 10 chr6 1027473 1027658 -188251896 + MIR SINE MIR 12 200 -62 270 269 15 0 chr6 1028172 1028239 -188251315 - MIR3 SINE MIR -54 154 87 460 299 201 11 chr6 1028242 1028610 -188250944 - LTR16B LTR ERVL -24 440 3 780 324 107 21 chr6 1029043 1029668 -188249886 - ERVL LTR ERVL -2327 3437 2727 547 121 61 50 chr6 1029716 1029815 -188249739 - LTR12 LTR ERV1 0 714 615 296 198 66 22 chr6 1029818 1029909 -188249645 - LTR30 LTR ERV1 -80 642 548 1067 119 37 107 chr6 1029910 1030154 -188249400 - LTR12 LTR ERV1 -435 279 53 243 250 0 0 chr6 1030154 1030206 -188249348 - LTR30 LTR ERV1 -670 52 1 1612 306 88 36 chr6 1030270 1031126 -188248428 - ERVL LTR ERVL -2406 2590 1691 549 371 44 18 chr6 1031796 1032294 -188247260 - ERVL LTR ERVL -4483 513 3 238 231 213 37 chr6 1032298 1032514 -188247040 - LTR16B LTR ERVL -2 462 209 375 318 16 0 chr6 1033900 1034029 -188245525 + MER63A DNA MER1_type 63 193 -17 957 149 0 0 chr6 1035940 1036115 -188243439 + (GGGA)n Simple_repeat Simple_repeat 4 178 0 443 296 30 23 chr6 1036184 1036316 -188243238 + L2 LINE L2 3139 3271 -1 1435 186 164 0 chr6 1037564 1037876 -188241678 + MSTB LTR MaLR 16 378 -48 416 326 44 62 chr6 1038268 1038495 -188241059 + HAL1b LINE L1 1 223 -1125 24 24 0 24 chr6 1038511 1038531 -188241023 + AT_rich Low_complexity Low_complexity 1 20 -21 2774 19 0 0 chr6 1038531 1038849 -188240705 + AluYb8 SINE Alu 1 318 0 24 24 0 24 chr6 1038849 1038870 -188240684 + AT_rich Low_complexity Low_complexity 20 41 0 458 287 72 32 chr6 1038870 1039121 -188240433 + HAL1b LINE L1 232 492 -856 231 230 70 30 chr6 1039130 1039230 -188240324 + HAL1b LINE L1 634 737 -611 5269 201 49 16 chr6 1039442 1040713 -188238841 - L1M3 LINE L1 -622 5558 4219 2277 85 0 0 chr6 1040713 1041006 -188238548 - AluY SINE Alu -12 299 7 5269 201 49 16 chr6 1041006 1041202 -188238352 - L1M3 LINE L1 -1961 4219 4031 569 291 65 87 chr6 1041202 1041776 -188237778 + L1MC4a LINE L1 4695 5255 -891 215 152 22 0 chr6 1041790 1041836 -188237718 + (TG)n Simple_repeat Simple_repeat 2 48 0 1910 264 34 21 chr6 1041853 1042464 -188237090 + L1MC4a LINE L1 5284 5902 -1906 2040 123 0 13 chr6 1042595 1042905 -188236649 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 1042925 1042954 -188236600 + AT_rich Low_complexity Low_complexity 1 29 0 410 217 65 65 chr6 1043487 1043625 -188235929 - MER112 DNA MER1_type -7 253 116 327 335 103 44 chr6 1043661 1044461 -188235093 - L2 LINE L2 -18 3295 2423 2056 105 21 0 chr6 1045404 1045690 -188233864 + AluSg SINE Alu 1 292 -18 234 0 0 0 chr6 1045812 1045838 -188233716 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 196 374 159 6 chr6 1046130 1046293 -188233261 + MIR SINE MIR 56 243 -19 243 0 0 0 chr6 1047041 1047068 -188232486 + (TG)n Simple_repeat Simple_repeat 2 28 0 428 188 89 0 chr6 1048621 1048722 -188230832 - L1MB2 LINE L1 0 6171 6062 2826 147 31 4 chr6 1049409 1049891 -188229663 - L1MB3 LINE L1 -10 6173 5679 1658 232 57 5 chr6 1050053 1050380 -188229174 - L1 LINE L1 -2649 3497 3143 183 100 0 0 chr6 1050380 1050410 -188229144 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1658 232 57 5 chr6 1050410 1050610 -188228944 - L1 LINE L1 -3003 3143 2955 872 176 70 20 chr6 1054204 1054403 -188225151 - AluJo SINE Alu -19 293 85 2174 104 3 0 chr6 1054845 1055153 -188224401 + AluSc SINE Alu 1 309 0 1600 167 56 44 chr6 1055167 1055276 -188224278 + L1MA5 LINE L1 5937 6043 -257 2065 102 21 0 chr6 1055276 1055559 -188223995 + AluSx SINE Alu 12 300 -12 1600 167 56 44 chr6 1055559 1055809 -188223745 + L1MA5 LINE L1 6043 6300 0 217 359 88 28 chr6 1056976 1057193 -188222361 + MIR SINE MIR 1 230 -32 345 308 51 0 chr6 1057632 1057749 -188221805 - L2 LINE L2 -5 3308 3186 335 295 36 58 chr6 1057751 1057890 -188221664 - MER5B DNA MER1_type -32 146 11 302 276 141 49 chr6 1057902 1058065 -188221489 - L2 LINE L2 -508 2806 2629 3513 195 64 12 chr6 1058545 1059236 -188220318 - MER21B LTR ERV1 -123 740 14 192 285 105 40 chr6 1059295 1059523 -188220031 - L2 LINE L2 -647 2667 2425 2466 153 50 10 chr6 1059594 1059998 -188219556 - MSTC LTR MaLR -8 420 1 2019 161 26 16 chr6 1060167 1060553 -188219001 - MLT1B LTR MaLR 0 390 1 2488 65 0 0 chr6 1061168 1061475 -188218079 + AluY SINE Alu 1 307 -4 393 275 9 28 chr6 1061545 1061654 -188217900 + L2 LINE L2 3162 3268 -4 220 331 6 0 chr6 1062026 1062198 -188217356 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 316 306 6 0 chr6 1062228 1062401 -188217153 + (CAGAGA)n Simple_repeat Simple_repeat 5 178 0 696 262 17 17 chr6 1062893 1063065 -188216489 - MER20 DNA MER1_type -10 209 38 2360 67 0 0 chr6 1064603 1064901 -188214653 + AluY SINE Alu 1 298 -13 241 250 20 50 chr6 1065291 1065391 -188214163 - L1ME4a LINE L1 -61 6060 5964 609 169 17 25 chr6 1065397 1065515 -188214039 - FLAM_C SINE Alu -14 129 13 500 261 11 44 chr6 1065635 1065815 -188213739 - MER5B DNA MER1_type 0 178 5 3311 170 18 24 chr6 1066906 1067214 -188212340 + L1MB3 LINE L1 5519 5827 -356 2381 51 0 3 chr6 1067214 1067509 -188212045 + AluY SINE Alu 1 294 -17 3311 170 18 24 chr6 1067509 1067869 -188211685 + L1MB3 LINE L1 5827 6183 0 571 240 74 88 chr6 1068341 1068607 -188210947 - L1MC4 LINE L1 0 8042 7781 451 177 10 0 chr6 1068607 1068703 -188210851 + L1MB2 LINE L1 6073 6169 -2 571 240 74 88 chr6 1068703 1068799 -188210755 - L1MC4 LINE L1 -261 7781 7685 21 0 0 0 chr6 1068810 1068831 -188210723 + AT_rich Low_complexity Low_complexity 1 21 0 522 163 17 22 chr6 1068837 1069015 -188210539 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4061 241 60 12 chr6 1069054 1070218 -188209336 - L1MC4 LINE L1 -366 7676 6457 1397 154 16 36 chr6 1070465 1070822 -188208732 + Tigger2a DNA MER2_type 1 444 0 257 330 36 0 chr6 1071161 1071273 -188208281 - MLT1I LTR MaLR 0 409 294 361 285 42 76 chr6 1072997 1073260 -188206294 - MER102b DNA MER1_type 0 341 88 2074 118 13 0 chr6 1073675 1073980 -188205574 + AluSx SINE Alu 1 309 -3 352 335 80 4 chr6 1074046 1074285 -188205269 - MIR SINE MIR -3 259 3 195 302 16 0 chr6 1075423 1075486 -188204068 + MIR SINE MIR 82 145 -63 519 301 88 19 chr6 1075967 1076183 -188203371 - L1P LINE L1 -3089 3057 2827 505 161 32 0 chr6 1076189 1076282 -188203272 + L1PA16 LINE L1 6061 6156 -10 306 199 0 23 chr6 1077103 1077274 -188202280 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 721 168 4 4 chr6 1077330 1077580 -188201974 + (TG)n Simple_repeat Simple_repeat 1 250 0 303 282 12 0 chr6 1078676 1078761 -188200793 - MER81 DNA DNA -27 87 2 1659 155 28 0 chr6 1079379 1079669 -188199885 - AluJo SINE Alu -14 298 1 181 194 0 28 chr6 1079812 1079848 -188199706 + L2 LINE L2 3227 3261 -11 244 234 117 97 chr6 1080647 1080792 -188198762 - MIR3 SINE MIR -30 178 31 652 94 0 0 chr6 1080800 1080885 -188198669 - AluJ/FLAM SINE Alu -217 95 11 428 247 23 40 chr6 1080949 1081123 -188198431 + L1MC5 LINE L1 7741 7911 -50 182 250 14 0 chr6 1081147 1081219 -188198335 + (TA)n Simple_repeat Simple_repeat 1 73 0 2148 101 6 19 chr6 1081356 1081673 -188197881 - AluSq SINE Alu 0 313 1 321 232 12 161 chr6 1081808 1081976 -188197578 - L2 LINE L2 -6 3307 3165 1106 202 164 13 chr6 1082124 1082441 -188197113 + MLT1A1 LTR MaLR 1 365 0 578 214 9 0 chr6 1082754 1082866 -188196688 + MER81 DNA DNA 2 114 0 21 0 0 0 chr6 1083483 1083504 -188196050 + AT_rich Low_complexity Low_complexity 1 21 0 2052 109 13 0 chr6 1084381 1084683 -188194871 - AluSq SINE Alu -7 306 1 826 199 92 24 chr6 1085102 1085308 -188194246 + MER58A DNA MER1_type 1 220 -4 2216 85 7 0 chr6 1087419 1087714 -188191840 + AluSq SINE Alu 1 297 -16 1183 109 55 0 chr6 1088311 1088494 -188191060 - L1PA14 LINE L1 -2 6159 5967 250 314 32 85 chr6 1089629 1089817 -188189737 - MIR SINE MIR -24 238 61 235 279 44 15 chr6 1090655 1090723 -188188831 - MIR3 SINE MIR -136 72 3 242 325 42 8 chr6 1090964 1091084 -188188470 + MIR SINE MIR 118 241 -21 611 327 44 31 chr6 1091104 1091330 -188188224 - MIR SINE MIR -23 239 11 2275 94 0 7 chr6 1091967 1092275 -188187279 + AluSq SINE Alu 1 306 -7 305 295 30 78 chr6 1092463 1092529 -188187025 - L1M4 LINE L1 -3316 2830 2762 2152 115 0 0 chr6 1092529 1092833 -188186721 - AluY SINE Alu -7 304 1 305 295 30 78 chr6 1092833 1092932 -188186622 - L1M4 LINE L1 -3384 2762 2673 286 277 170 0 chr6 1093451 1093563 -188185991 - L2 LINE L2 -4 3309 3179 297 167 0 0 chr6 1094088 1094136 -188185418 - L1MEd LINE L1 -5985 134 87 349 224 254 15 chr6 1094449 1094583 -188184971 + MIR SINE MIR 19 184 -78 186 351 91 0 chr6 1095121 1095198 -188184356 + MIR SINE MIR 179 262 0 261 286 31 10 chr6 1095200 1095298 -188184256 - L1MEd LINE L1 -6015 104 5 213 209 36 164 chr6 1096045 1096122 -188183432 - L2 LINE L2 -30 3283 3222 2113 110 0 3 chr6 1096122 1096422 -188183132 + AluSx SINE Alu 1 299 -13 213 209 36 164 chr6 1096422 1096454 -188183100 - L2 LINE L2 -91 3222 3188 373 316 58 23 chr6 1096470 1096641 -188182913 - MIR SINE MIR -8 254 78 650 314 47 13 chr6 1097525 1097761 -188181793 - MIR SINE MIR 0 262 19 1254 296 101 25 chr6 1097769 1098614 -188180940 - L1MC4a LINE L1 -867 5492 5272 2435 53 0 0 chr6 1098817 1099120 -188180434 - AluY SINE Alu -8 303 1 2088 103 0 3 chr6 1099583 1099874 -188179680 - AluSg SINE Alu -20 290 1 1149 134 0 6 chr6 1100479 1100651 -188178903 - Tigger1 DNA MER2_type 0 2418 2248 381 136 0 45 chr6 1100653 1100719 -188178835 - Tigger1 DNA MER2_type -2355 63 1 2037 96 27 7 chr6 1101066 1101358 -188178196 - AluSg SINE Alu -11 299 2 322 288 12 0 chr6 1101942 1102022 -188177532 + L2 LINE L2 3184 3264 -49 21 36 0 0 chr6 1102216 1102244 -188177310 + AT_rich Low_complexity Low_complexity 1 28 0 2030 118 20 0 chr6 1102318 1102622 -188176932 + AluSx SINE Alu 1 310 -2 232 250 50 19 chr6 1103089 1103249 -188176305 + (CA)n Simple_repeat Simple_repeat 1 165 0 2235 88 0 16 chr6 1103441 1103747 -188175807 + AluSx SINE Alu 1 301 -11 264 179 0 39 chr6 1104250 1104328 -188175226 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 1030 253 101 58 chr6 1104462 1105117 -188174437 - L1MC5 LINE L1 -30 7931 7249 728 103 9 0 chr6 1105191 1105307 -188174247 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 24 0 0 0 chr6 1106370 1106394 -188173160 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 1106721 1106750 -188172804 + AT_rich Low_complexity Low_complexity 1 29 0 225 94 0 0 chr6 1107916 1107948 -188171606 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 429 304 32 0 chr6 1109857 1109982 -188169572 - L2 LINE L2 0 3313 3185 403 335 54 16 chr6 1110165 1110350 -188169204 - MIR3 SINE MIR -7 201 10 309 330 57 31 chr6 1111639 1111833 -188167721 - MIR3 SINE MIR -7 201 3 182 167 62 0 chr6 1113112 1113160 -188166394 + GA-rich Low_complexity Low_complexity 4 54 0 213 242 55 66 chr6 1114659 1114750 -188164804 - L2 LINE L2 -9 3263 3174 1733 193 42 28 chr6 1115115 1115473 -188164081 - MLT1A1 LTR MaLR -2 363 1 220 302 35 43 chr6 1115508 1115624 -188163930 - L2 LINE L2 0 3272 3158 307 224 42 159 chr6 1116944 1117208 -188162346 + MER112 DNA MER1_type 1 233 -27 1497 206 59 6 chr6 1117737 1118057 -188161497 - MER58B DNA MER1_type -4 337 1 1716 151 27 38 chr6 1118628 1118920 -188160634 + AluJo SINE Alu 1 289 -23 288 0 0 0 chr6 1119865 1119897 -188159657 + (TG)n Simple_repeat Simple_repeat 2 33 0 2604 192 51 25 chr6 1119897 1120206 -188159348 - L1MB7 LINE L1 -11 6173 5874 1838 134 0 81 chr6 1120206 1120526 -188159028 - AluJo SINE Alu -14 298 5 2604 192 51 25 chr6 1120526 1120821 -188158733 - L1MB7 LINE L1 -310 5874 5553 1611 232 21 3 chr6 1120851 1121226 -188158328 - L1MA10 LINE L1 -7 6327 5946 2661 183 13 37 chr6 1121260 1121736 -188157818 + L1MA9 LINE L1 5042 5483 -819 236 136 0 0 chr6 1121736 1121780 -188157774 + LTR66 LTR ERVL 393 436 -174 2661 183 13 37 chr6 1121780 1122215 -188157339 + L1MA9 LINE L1 5483 5927 -375 318 26 0 0 chr6 1123023 1123062 -188156492 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 1552 201 87 13 chr6 1125049 1125438 -188154116 + MSTC LTR MaLR 10 427 -1 1718 196 102 8 chr6 1127101 1127463 -188152091 + MSTD LTR MaLR 1 396 0 458 289 64 17 chr6 1127579 1127752 -188151802 - MLT1J LTR MaLR -330 181 1 631 243 10 2 chr6 1128587 1128759 -188150795 + L1P1 LINE L1 5604 5777 -362 604 240 8 0 chr6 1128968 1129097 -188150457 + AluJo SINE Alu 2 131 -181 1092 46 0 0 chr6 1129097 1129228 -188150326 - L1P2 LINE L1 -385 5770 5640 25 31 0 0 chr6 1129241 1129273 -188150281 + AT_rich Low_complexity Low_complexity 1 32 0 1207 151 0 0 chr6 1129273 1129445 -188150109 + AluJo SINE Alu 118 289 -23 573 290 106 44 chr6 1131370 1131691 -188147863 + MLT1J LTR MaLR 1 341 -170 397 274 115 0 chr6 1132456 1132569 -188146985 + MER94 DNA DNA 2 127 -7 2048 114 31 3 chr6 1134740 1135030 -188144524 + AluSx SINE Alu 1 298 -14 1228 63 11 6 chr6 1135052 1135227 -188144327 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 378 258 31 31 chr6 1135807 1135935 -188143619 - LTR67 LTR ERVL 0 557 430 447 184 0 0 chr6 1136326 1136413 -188143141 + (TG)n Simple_repeat Simple_repeat 1 87 0 1737 164 9 50 chr6 1138027 1138350 -188141204 + AluJo SINE Alu 1 310 -2 238 232 0 53 chr6 1139820 1140010 -188139544 + CT-rich Low_complexity Low_complexity 1 180 0 662 182 75 44 chr6 1140986 1141145 -188138409 + L1ME LINE L1 138 301 -5904 759 277 152 16 chr6 1141179 1141759 -188137795 + L1ME LINE L1 703 1207 -4998 5658 131 51 30 chr6 1142033 1142383 -188137171 - L1MA5 LINE L1 -3 6297 5956 2320 84 13 0 chr6 1142383 1142682 -188136872 - AluSg SINE Alu -7 303 1 5658 131 51 30 chr6 1142682 1143862 -188135692 - L1MA5 LINE L1 -344 5956 4550 2296 61 7 0 chr6 1145664 1145983 -188133571 - AluY SINE Alu 0 321 1 2273 95 17 0 chr6 1146437 1146733 -188132821 + AluSp SINE Alu 1 301 -12 240 226 65 0 chr6 1147039 1147101 -188132453 + L2 LINE L2 3159 3224 -48 4376 257 83 12 chr6 1147284 1149209 -188130345 + L1MEc LINE L1 741 2805 -3410 515 77 0 121 chr6 1149209 1149261 -188130293 - MADE1 DNA Mariner 0 80 42 2147 114 7 14 chr6 1149261 1149558 -188129996 + AluSp SINE Alu 1 295 -18 515 77 0 121 chr6 1149558 1149596 -188129958 - MADE1 DNA Mariner -38 42 1 4376 257 83 12 chr6 1149596 1149877 -188129677 + L1MEc LINE L1 2805 3064 -3151 275 242 21 42 chr6 1151042 1151136 -188128418 - Charlie7 DNA MER1_type -5 2607 2516 4343 119 45 126 chr6 1151136 1151870 -188127684 + Tigger3b DNA MER2_type 2 794 -2235 993 89 0 0 chr6 1151870 1151994 -188127560 - AluSp/q SINE Alu -17 296 173 4343 119 45 126 chr6 1151994 1152407 -188127147 + Tigger3b DNA MER2_type 794 1177 -1852 2502 84 0 0 chr6 1152407 1152717 -188126837 - AluY SINE Alu -1 310 1 4343 119 45 126 chr6 1152717 1152769 -188126785 + Tigger3b DNA MER2_type 1177 1232 0 668 94 44 44 chr6 1154714 1154894 -188124660 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 418 220 7 11 chr6 1154894 1155177 -188124377 + GA-rich Low_complexity Low_complexity 1 281 0 2076 146 108 10 chr6 1156565 1156955 -188122599 - MSTA LTR MaLR 0 428 1 451 268 8 0 chr6 1157482 1157605 -188121949 - MER58B DNA MER1_type 0 341 218 718 196 39 67 chr6 1157876 1158055 -188121499 + MER58A DNA MER1_type 43 216 -8 215 154 0 26 chr6 1158994 1159033 -188120521 + CT-rich Low_complexity Low_complexity 4 41 0 3605 121 13 0 chr6 1159290 1159836 -188119718 - L1PB4 LINE L1 -4 6152 5600 260 232 0 18 chr6 1161852 1161908 -188117646 + CT-rich Low_complexity Low_complexity 3 57 0 657 225 62 25 chr6 1162978 1163138 -188116416 + MER63A DNA MER1_type 10 175 -35 5303 122 46 21 chr6 1163376 1163895 -188115659 + MER4D LTR ERV1 1 506 -366 2619 106 8 13 chr6 1163895 1164272 -188115282 + THE1C LTR MaLR 1 375 0 10262 105 40 45 chr6 1164272 1165858 -188113696 + THE1C-int LTR MaLR 1 1578 -2 5303 122 46 21 chr6 1165858 1165871 -188113683 + MER4D LTR ERV1 506 517 -355 2410 129 11 11 chr6 1165871 1166244 -188113310 + THE1C LTR MaLR 1 373 -2 5303 122 46 21 chr6 1166244 1166560 -188112994 + MER4D LTR ERV1 517 872 0 375 193 0 36 chr6 1166743 1166826 -188112728 - Charlie1 DNA MER1_type -7 2754 2675 2900 206 72 20 chr6 1166878 1167568 -188111986 - Charlie1 DNA MER1_type -225 2536 1811 2646 92 29 46 chr6 1167574 1167988 -188111566 - L1PA15 LINE L1 -2 6163 5757 1599 83 0 62 chr6 1167989 1168230 -188111324 + L1P4 LINE L1 5470 5695 -470 683 292 40 40 chr6 1168235 1168605 -188110949 - Charlie1 DNA MER1_type -954 1807 1438 200 135 0 54 chr6 1168625 1168662 -188110892 - MER5A DNA MER1_type -152 37 3 22 56 0 0 chr6 1168900 1168936 -188110618 + AT_rich Low_complexity Low_complexity 1 36 0 1721 39 5 0 chr6 1168937 1169145 -188110409 - L1PA4 LINE L1 0 6155 5947 405 331 7 0 chr6 1169360 1169505 -188110049 + MIR SINE MIR 117 262 0 25 0 0 0 chr6 1170114 1170139 -188109415 + AT_rich Low_complexity Low_complexity 1 25 0 282 199 62 155 chr6 1170154 1170201 -188109353 - MLT1L LTR MaLR -4 611 561 2610 7 0 0 chr6 1170201 1170478 -188109076 + AluYa5 SINE Alu 35 311 0 282 199 62 155 chr6 1170478 1170591 -188108963 - MLT1L LTR MaLR -54 561 466 1164 157 42 0 chr6 1172017 1172234 -188107320 + L1MA9 LINE L1 5919 6144 -168 661 138 36 29 chr6 1172243 1172381 -188107173 - L1MA7 LINE L1 -1 6290 6152 982 149 36 10 chr6 1172381 1172573 -188106981 + L1MA9 LINE L1 6114 6312 0 305 340 43 7 chr6 1172654 1172795 -188106759 - MIR3 SINE MIR -15 193 48 239 274 154 8 chr6 1174336 1174453 -188105101 - MLT1L LTR MaLR -106 436 303 * 439 232 220 24 chr6 1174429 1174684 -188104870 - MLT1G3 LTR MaLR -200 395 4 228 192 19 19 chr6 1176152 1176204 -188103350 + MER94 DNA DNA 6 57 -77 1233 152 22 9 chr6 1176273 1176497 -188103057 + L1MA8 LINE L1 6054 6280 -11 276 231 0 0 chr6 1176515 1176567 -188102987 + MER94 DNA DNA 68 119 -15 1832 209 104 14 chr6 1176676 1177139 -188102415 + MLT1D LTR MaLR 1 653 -1 686 191 92 13 chr6 1177182 1177334 -188102220 - AluJb SINE Alu -12 300 137 367 271 80 0 chr6 1177597 1177774 -188101780 - MIR SINE MIR 0 262 68 445 251 57 11 chr6 1177846 1178021 -188101533 - MIR SINE MIR -34 228 46 301 253 12 12 chr6 1178644 1178727 -188100827 + MIR3 SINE MIR 108 190 -18 205 318 0 0 chr6 1178748 1178811 -188100743 + GA-rich Low_complexity Low_complexity 3 65 0 2482 85 3 0 chr6 1179672 1179978 -188099576 - AluSp SINE Alu -6 307 1 2218 95 3 3 chr6 1180416 1180699 -188098855 - AluSc SINE Alu -26 283 1 7012 69 8 0 chr6 1181177 1182180 -188097374 - L1PA7 LINE L1 -4 6150 5145 2143 69 10 3 chr6 1182181 1182470 -188097084 + L1PA7 LINE L1 4873 5163 -983 1739 162 98 0 chr6 1182909 1183224 -188096330 + MER7A DNA MER2_type 1 344 -2 250 262 16 0 chr6 1185256 1185317 -188094237 - L2 LINE L2 -25 3247 3186 2160 112 25 0 chr6 1187535 1187821 -188091733 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr6 1188808 1188838 -188090716 + AT_rich Low_complexity Low_complexity 1 30 0 282 303 31 31 chr6 1189072 1189234 -188090320 + L1ME LINE L1 306 467 -5905 395 271 25 109 chr6 1189403 1189877 -188089677 + L1ME LINE L1 1186 1609 -4775 1576 112 0 14 chr6 1189878 1190101 -188089453 - AluSg/x SINE Alu -5 305 86 1028 188 5 30 chr6 1190170 1190372 -188089182 - AluJb SINE Alu -9 303 107 274 291 94 0 chr6 1190381 1190508 -188089046 + MIR SINE MIR 124 262 0 346 270 99 34 chr6 1191262 1191495 -188088059 - MIR SINE MIR -1 261 14 201 175 0 0 chr6 1192431 1192471 -188087083 + CT-rich Low_complexity Low_complexity 1 40 0 242 253 51 0 chr6 1192999 1193078 -188086476 + L2 LINE L2 3190 3272 0 384 141 62 18 chr6 1193533 1193817 -188085737 + (TAGA)n Simple_repeat Simple_repeat 1 296 0 504 72 0 0 chr6 1193830 1193899 -188085655 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 2355 237 78 62 chr6 1194298 1194872 -188084682 + L1MEc LINE L1 34 631 -5765 540 148 30 20 chr6 1194872 1194973 -188084581 + U13 snRNA snRNA 2 103 -1 2355 237 78 62 chr6 1194973 1195360 -188084194 + L1MEc LINE L1 631 1010 -5386 402 303 8 0 chr6 1195458 1195580 -188083974 + MER94 DNA DNA 5 127 -7 2056 120 62 14 chr6 1197849 1198207 -188081347 + THE1C LTR MaLR 1 375 0 911 168 7 19 chr6 1198334 1198489 -188081065 + FRAM SINE Alu 1 152 -24 274 217 14 0 chr6 1199265 1199334 -188080220 + MIR3 SINE MIR 118 187 -21 26 30 0 0 chr6 1200336 1200369 -188079185 + AT_rich Low_complexity Low_complexity 1 33 0 251 246 204 24 chr6 1200497 1200664 -188078890 + MIR SINE MIR 66 262 0 45 69 0 0 chr6 1200672 1200759 -188078795 + AT_rich Low_complexity Low_complexity 1 87 0 513 232 176 67 chr6 1200892 1201462 -188078092 + L1ME4a LINE L1 5481 6121 0 1043 133 62 0 chr6 1202277 1202472 -188077082 - L1MA8 LINE L1 -1 6290 6084 551 277 94 89 chr6 1202549 1202921 -188076633 + MLT1J LTR MaLR 107 480 -31 2555 216 104 3 chr6 1203184 1203894 -188075660 + L1MEc LINE L1 2502 3283 -2932 308 287 132 49 chr6 1203947 1204212 -188075342 + L2 LINE L2 3023 3309 -4 286 394 38 22 chr6 1204431 1204748 -188074806 - L2 LINE L2 -357 2957 2636 526 232 151 16 chr6 1205521 1205706 -188073848 + MIR SINE MIR 47 256 -6 874 225 35 22 chr6 1206720 1206951 -188072603 + MIR SINE MIR 12 245 -17 202 257 0 54 chr6 1209531 1209605 -188069949 - MIR SINE MIR -128 134 65 198 309 60 0 chr6 1211957 1212041 -188067513 - L2 LINE L2 -460 2854 2766 2411 199 17 2 chr6 1212582 1213059 -188066495 - MER31A LTR ERV1 0 485 2 219 255 0 109 chr6 1213480 1213664 -188065890 + (CATCC)n Simple_repeat Simple_repeat 4 167 0 209 295 46 29 chr6 1213881 1214054 -188065500 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 219 310 55 0 chr6 1214068 1214213 -188065341 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 201 182 55 18 chr6 1214231 1214286 -188065268 + GA-rich Low_complexity Low_complexity 1 57 0 698 150 87 40 chr6 1214631 1214804 -188064750 - MER53 DNA DNA 0 189 9 2200 92 0 20 chr6 1215687 1215982 -188063572 + AluSc SINE Alu 1 289 -20 309 276 130 73 chr6 1216315 1216363 -188063191 + MIR SINE MIR 49 93 -169 1797 141 47 81 chr6 1216363 1216747 -188062807 + THE1C LTR MaLR 5 375 0 309 276 130 73 chr6 1216747 1216890 -188062664 + MIR SINE MIR 93 251 -11 240 339 46 9 chr6 1217101 1217210 -188062344 + MIR SINE MIR 20 132 -76 587 219 55 34 chr6 1217634 1217780 -188061774 - MER63 DNA MER1_type -57 779 5 348 219 77 45 chr6 1218768 1218923 -188060631 + L1MC/D LINE L1 3068 3227 -2919 604 310 87 46 chr6 1219485 1220623 -188058931 + L1MC/D LINE L1 3623 4836 -1310 276 305 64 47 chr6 1220674 1221018 -188058536 + L1MC/D LINE L1 4782 5131 -1015 406 283 102 58 chr6 1221150 1221773 -188057781 + L1MC/D LINE L1 5175 5824 -747 578 193 7 43 chr6 1221777 1221917 -188057637 + L1ME2 LINE L1 5701 5835 -329 632 289 4 41 chr6 1221954 1222196 -188057358 + L1ME2 LINE L1 5919 6151 -13 293 0 27 0 chr6 1222919 1222956 -188056598 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 183 127 14 chr6 1223218 1223289 -188056265 + MER69 DNA AcHobo 2448 2526 0 1600 174 11 3 chr6 1223669 1223951 -188055603 + AluJb SINE Alu 1 284 -28 466 230 122 0 chr6 1225121 1225260 -188054294 + MIR SINE MIR 76 231 -31 23 54 0 0 chr6 1225310 1225347 -188054207 + AT_rich Low_complexity Low_complexity 1 37 0 991 156 146 35 chr6 1226936 1227135 -188052419 - Tigger2a DNA MER2_type -26 418 198 316 209 198 0 chr6 1227124 1227215 -188052339 - Tigger2a DNA MER2_type -325 109 1 * 353 271 64 53 chr6 1227657 1227845 -188051709 - MIR SINE MIR -26 236 47 813 228 25 10 chr6 1228149 1228351 -188051203 + MER20 DNA MER1_type 1 205 -14 372 59 0 0 chr6 1228390 1228441 -188051113 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 280 216 0 81 chr6 1230385 1230496 -188049058 - MIR3 SINE MIR -18 190 89 1052 142 6 11 chr6 1230541 1230717 -188048837 - L1MA1 LINE L1 0 6302 6128 180 0 0 0 chr6 1232950 1232970 -188046584 + (TTC)n Simple_repeat Simple_repeat 2 21 0 848 156 0 8 chr6 1232975 1233103 -188046451 - FLAM_C SINE Alu -16 127 1 205 279 0 0 chr6 1233168 1233229 -188046325 - MIR SINE MIR -80 128 68 298 266 46 18 chr6 1233615 1233724 -188045830 - L2 LINE L2 -18 3295 3184 618 333 92 51 chr6 1233729 1234251 -188045303 - L2 LINE L2 -998 2316 1738 1534 65 0 0 chr6 1234251 1234450 -188045104 - L1PA4 LINE L1 0 6155 5957 618 333 92 51 chr6 1234450 1234851 -188044703 - L2 LINE L2 -1576 1738 1355 319 275 75 81 chr6 1235246 1235541 -188044013 - L2 LINE L2 -2604 710 418 1010 156 75 15 chr6 1235657 1235856 -188043698 - MER20 DNA MER1_type 0 219 9 196 191 106 0 chr6 1237691 1237738 -188041816 - L2 LINE L2 0 3313 3262 792 212 31 45 chr6 1237813 1238035 -188041519 - MER20 DNA MER1_type 0 219 1 856 287 5 0 chr6 1238842 1239065 -188040489 - MER58A DNA MER1_type 0 224 1 210 338 0 0 chr6 1239260 1239331 -188040223 - MIR3 SINE MIR -49 159 89 849 202 17 77 chr6 1240927 1241160 -188038394 + MER20 DNA MER1_type 1 219 0 2083 107 41 7 chr6 1241740 1242031 -188037523 + AluSx SINE Alu 1 301 -11 263 26 51 0 chr6 1244890 1244929 -188034625 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 189 107 0 0 chr6 1245163 1245191 -188034363 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 569 207 22 0 chr6 1245282 1245509 -188034045 - L1MA9 LINE L1 -21 6291 5964 2461 77 3 0 chr6 1245518 1245818 -188033736 - AluSp SINE Alu -12 301 1 484 246 60 24 chr6 1248208 1248375 -188031179 - MIR SINE MIR -73 189 17 241 178 0 0 chr6 1249078 1249123 -188030431 - L1MC4 LINE L1 -1339 6703 6659 21 0 0 0 chr6 1250085 1250106 -188029448 + AT_rich Low_complexity Low_complexity 1 21 0 230 324 0 14 chr6 1250125 1250199 -188029355 + L2 LINE L2 3019 3091 -181 621 247 95 55 chr6 1250793 1251156 -188028398 + LTR67 LTR ERVL 116 548 -9 342 268 78 33 chr6 1253468 1253621 -188025933 + MIR SINE MIR 26 185 -77 1000 133 40 0 chr6 1253966 1254139 -188025415 + L1MA8 LINE L1 6111 6290 -1 730 214 330 15 chr6 1254247 1254384 -188025170 + MLT1F LTR MaLR 1 94 -448 2437 86 0 0 chr6 1254384 1254688 -188024866 + AluSg SINE Alu 1 304 -6 730 214 330 15 chr6 1254688 1254962 -188024592 + MLT1F LTR MaLR 94 542 0 217 219 0 0 chr6 1254969 1255010 -188024544 + (CA)n Simple_repeat Simple_repeat 2 42 0 2993 224 122 22 chr6 1256148 1257177 -188022377 + L1M4 LINE L1 3909 5040 -1106 5752 119 7 8 chr6 1257177 1258772 -188020782 - L1PA13 LINE L1 0 6163 4549 218 125 25 0 chr6 1260489 1260529 -188019025 + T-rich Low_complexity Low_complexity 3 43 0 1663 128 132 0 chr6 1260698 1260964 -188018590 - AluSq SINE Alu -11 302 2 2162 115 0 10 chr6 1261383 1261695 -188017859 - AluSc SINE Alu 0 309 1 2154 172 13 0 chr6 1262551 1262929 -188016625 + MLT1B LTR MaLR 1 383 -7 195 69 0 0 chr6 1264344 1264373 -188015181 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 273 0 0 chr6 1265144 1265199 -188014355 + (CA)n Simple_repeat Simple_repeat 2 56 0 318 23 23 0 chr6 1265472 1265515 -188014039 + AluY SINE Alu 1 44 -256 2508 81 3 0 chr6 1265515 1265824 -188013730 + AluY SINE Alu 1 310 -1 1894 135 17 14 chr6 1266049 1266345 -188013209 + AluSx SINE Alu 1 297 -15 365 219 14 0 chr6 1266345 1266418 -188013136 + Tigger7 DNA MER2_type 1 74 -265 14670 125 20 6 chr6 1266427 1268620 -188010934 + Tigger1 DNA MER2_type 2 2227 -191 1182 82 44 0 chr6 1268876 1269061 -188010493 - AluY SINE Alu 0 307 116 883 180 28 28 chr6 1269066 1269244 -188010310 + Tigger1 DNA MER2_type 2241 2418 0 1424 114 0 82 chr6 1269459 1269714 -188009840 + Tigger7 DNA MER2_type 2246 2479 -8 398 300 23 8 chr6 1269979 1270109 -188009445 - MIR3 SINE MIR -40 168 37 320 318 227 14 chr6 1270112 1270754 -188008800 - L3 LINE CR1 -1 1576 798 739 254 28 19 chr6 1270789 1271003 -188008551 + L1MA9 LINE L1 6087 6300 0 397 304 108 19 chr6 1271232 1271390 -188008164 - L3 LINE CR1 -1072 505 334 393 100 0 0 chr6 1271617 1271667 -188007887 + AluJ/FLAM SINE Alu 10 59 -243 228 356 7 52 chr6 1272820 1272955 -188006599 + MIR SINE MIR 20 148 -114 1778 166 14 14 chr6 1273087 1273376 -188006178 + AluJo SINE Alu 4 292 -20 2049 187 62 2 chr6 1274607 1275030 -188004524 + L1MB3 LINE L1 5736 6183 0 1638 160 71 11 chr6 1275043 1275324 -188004230 + AluJo SINE Alu 1 298 -14 235 274 137 74 chr6 1276362 1276421 -188003133 + L2 LINE L2 2967 3021 -251 2072 127 0 48 chr6 1276421 1276737 -188002817 + AluJo SINE Alu 1 301 -11 235 274 137 74 chr6 1276737 1276947 -188002607 + L2 LINE L2 3021 3253 -19 1256 217 75 70 chr6 1278441 1278878 -188000676 - MER63C DNA MER1_type 0 1556 258 1838 141 62 3 chr6 1280295 1280601 -187998953 - MER2 DNA MER2_type 0 345 22 2683 145 121 64 chr6 1280601 1281182 -187998372 + LTR18B LTR ERVL 1 614 0 3591 118 30 4 chr6 1281378 1281938 -187997616 + L1MA4A LINE L1 5717 6291 -12 3798 177 8 28 chr6 1283012 1283770 -187995784 + L1MB3 LINE L1 5434 6176 -7 299 305 28 71 chr6 1283914 1284055 -187995499 + L2 LINE L2 3134 3268 -4 237 387 13 0 chr6 1284356 1284511 -187995043 - L2 LINE L2 -2493 821 665 685 176 58 88 chr6 1284616 1284665 -187994889 - MER3 DNA MER1_type -8 201 152 653 225 8 0 chr6 1284665 1284794 -187994760 + FLAM_A SINE Alu 1 130 -3 685 176 58 88 chr6 1284794 1284949 -187994605 - MER3 DNA MER1_type -57 152 3 712 30 20 20 chr6 1285255 1285356 -187994198 + L1PA13 LINE L1 6063 6163 0 1124 189 7 88 chr6 1285604 1285900 -187993654 + MLT1A1 LTR MaLR 44 315 -50 365 309 132 7 chr6 1285972 1286124 -187993430 + MER5B DNA MER1_type 3 173 -5 273 322 132 0 chr6 1286674 1286826 -187992728 - MIR3 SINE MIR -7 201 30 378 239 43 15 chr6 1287020 1287152 -187992402 - MIR SINE MIR -61 147 24 1200 204 109 18 chr6 1288365 1288694 -187990860 + MLT1A1 LTR MaLR 7 365 0 198 103 0 0 chr6 1288749 1288778 -187990776 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2153 200 85 14 chr6 1288846 1289352 -187990202 - MER67A LTR ERV1 -1 542 1 29 70 0 0 chr6 1290823 1290880 -187988674 + AT_rich Low_complexity Low_complexity 1 57 0 962 237 74 18 chr6 1291247 1291655 -187987899 + MLT1J LTR MaLR 1 511 0 297 164 66 0 chr6 1293207 1293268 -187986286 - MIR SINE MIR -72 190 126 240 174 148 61 chr6 1294492 1294607 -187984947 - MER112 DNA MER1_type -91 169 45 259 248 53 71 chr6 1294762 1294875 -187984679 + MIR SINE MIR 80 190 -72 1683 184 125 3 chr6 1295015 1295368 -187984186 + MSTD LTR MaLR 1 396 0 904 309 58 42 chr6 1296156 1296616 -187982938 - L1ME1 LINE L1 -310 5856 5391 665 275 39 5 chr6 1296680 1296887 -187982667 - MIR SINE MIR -26 236 23 252 265 153 24 chr6 1297628 1297798 -187981756 + MIR SINE MIR 34 225 -37 207 335 67 12 chr6 1298476 1298640 -187980914 - MIR SINE MIR -62 200 28 437 349 0 0 chr6 1299460 1299612 -187979942 - MIR3 SINE MIR -10 198 47 200 333 0 0 chr6 1299670 1299724 -187979830 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 232 0 0 chr6 1299750 1299832 -187979722 + (CATA)n Simple_repeat Simple_repeat 4 85 0 253 69 0 103 chr6 1299836 1299894 -187979660 - MER4-int LTR ERV1 -5436 1162 1111 522 241 0 0 chr6 1299901 1300046 -187979508 + (CATA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr6 1301463 1301495 -187978059 + (CA)n Simple_repeat Simple_repeat 2 33 0 204 303 40 0 chr6 1301800 1301876 -187977678 - MIR SINE MIR -118 144 66 3611 148 5 45 chr6 1301877 1302983 -187976571 + L1M2 LINE L1 4729 5799 -501 301 125 0 0 chr6 1303010 1303058 -187976496 - L1M1 LINE L1 -471 5829 5782 226 282 48 8 chr6 1303745 1303869 -187975685 + LTR16C LTR ERVL 363 491 0 910 199 62 93 chr6 1305396 1305783 -187973771 + L1MC5 LINE L1 7198 7572 -389 1466 321 30 38 chr6 1305809 1306704 -187972850 + L1MEc LINE L1 36 923 -5473 2427 103 0 0 chr6 1306704 1307014 -187972540 - AluSg SINE Alu 0 310 1 706 292 86 15 chr6 1307016 1307423 -187972131 + L1MEc LINE L1 1021 1456 -4940 240 232 37 12 chr6 1307428 1307510 -187972044 + (TA)n Simple_repeat Simple_repeat 1 84 0 760 249 29 24 chr6 1307515 1307724 -187971830 + L1ME1 LINE L1 5953 6162 -4 762 268 58 22 chr6 1307754 1308067 -187971487 + L1MC5 LINE L1 7603 7926 -35 431 245 46 33 chr6 1308263 1308414 -187971140 - MLT1J LTR MaLR -2 509 357 207 0 0 0 chr6 1309013 1309036 -187970518 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 1310158 1310182 -187969372 + (A)n Simple_repeat Simple_repeat 1 24 0 270 246 62 0 chr6 1310867 1310932 -187968622 + MER94 DNA DNA 1 69 -65 7902 164 29 21 chr6 1311002 1312286 -187967268 + L1PB4 LINE L1 3783 5055 -1101 1845 152 3 20 chr6 1312286 1312582 -187966972 - AluJo SINE Alu -21 291 1 7902 164 29 21 chr6 1312582 1313457 -187966097 + L1PB4 LINE L1 5055 5962 -194 2260 51 0 116 chr6 1313457 1313792 -187965762 - AluY SINE Alu -15 296 1 7902 164 29 21 chr6 1313792 1313988 -187965566 + L1PB4 LINE L1 5962 6155 -1 27 0 0 0 chr6 1313988 1314015 -187965539 + AT_rich Low_complexity Low_complexity 1 27 0 244 289 133 43 chr6 1314479 1314640 -187964914 + L1MC4a LINE L1 5823 5968 -1840 2141 105 67 64 chr6 1314640 1315029 -187964525 + MLT1B LTR MaLR 1 390 0 244 289 133 43 chr6 1315029 1315168 -187964386 + L1MC4a LINE L1 5968 6150 -1658 786 202 0 0 chr6 1315171 1315300 -187964254 + FLAM_A SINE Alu 1 129 -4 1408 221 120 14 chr6 1315372 1315729 -187963825 + MSTD LTR MaLR 2 396 0 222 37 0 0 chr6 1315945 1315972 -187963582 + (CA)n Simple_repeat Simple_repeat 2 28 0 426 85 0 0 chr6 1316167 1316226 -187963328 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 196 217 0 22 chr6 1316681 1316727 -187962827 - MIR SINE MIR -190 72 28 260 224 0 15 chr6 1319048 1319115 -187960439 - L2 LINE L2 -63 3250 3185 23 0 0 0 chr6 1322120 1322143 -187957411 + GC_rich Low_complexity Low_complexity 1 23 0 55 62 0 0 chr6 1322565 1322662 -187956892 + GC_rich Low_complexity Low_complexity 1 97 0 21 57 0 0 chr6 1322889 1322924 -187956630 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 1323001 1323023 -187956531 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 1323677 1323701 -187955853 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 1323850 1323877 -187955677 + AT_rich Low_complexity Low_complexity 1 27 0 190 288 0 17 chr6 1327208 1327267 -187952287 - MIR SINE MIR -131 77 20 1080 67 8 0 chr6 1327643 1327777 -187951777 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1327777 1327979 -187951575 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1327983 1328043 -187951511 + AluSp SINE Alu 73 132 -181 1424 119 5 0 chr6 1328045 1328247 -187951307 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328251 1328311 -187951243 + AluSp SINE Alu 73 132 -181 1039 67 7 7 chr6 1328313 1328448 -187951106 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1328448 1328650 -187950904 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328654 1328714 -187950840 + AluSp SINE Alu 73 132 -181 1434 119 5 0 chr6 1328716 1328918 -187950636 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328922 1328982 -187950572 + AluSp SINE Alu 73 132 -181 1053 83 0 0 chr6 1328984 1329116 -187950438 + AluSp SINE Alu 1 132 -181 1484 104 5 0 chr6 1329118 1329320 -187950234 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1329324 1329384 -187950170 + AluSp SINE Alu 73 132 -181 1055 83 0 0 chr6 1329386 1329518 -187950036 + AluSp SINE Alu 1 132 -181 2363 87 10 0 chr6 1329520 1329829 -187949725 + AluSp SINE Alu 1 312 -1 1557 163 3 48 chr6 1331593 1331882 -187947672 + AluJo SINE Alu 29 304 -8 498 238 163 13 chr6 1332745 1332988 -187946566 + L1ME1 LINE L1 5887 6159 -7 316 222 14 14 chr6 1334949 1335021 -187944533 - Tigger5 DNA MER2_type -1 2322 2251 * 386 164 0 0 chr6 1334990 1335045 -187944509 - Tigger5 DNA MER2_type -2268 55 1 1025 96 0 0 chr6 1335887 1336023 -187943531 - AluSg/x SINE Alu -1 311 176 299 143 0 0 chr6 1336095 1336144 -187943410 + L1MA8 LINE L1 6116 6164 -127 410 321 139 9 chr6 1336288 1336612 -187942942 - LTR16C LTR ERVL -39 452 87 367 223 57 76 chr6 1336729 1336886 -187942668 + MER63A DNA MER1_type 55 208 -2 1113 227 32 4 chr6 1337059 1337310 -187942244 + MIR SINE MIR 5 262 0 5897 141 20 15 chr6 1337596 1338594 -187940960 - L1MA8 LINE L1 -25 6266 5264 2818 49 0 0 chr6 1338630 1338956 -187940598 - LTR17 LTR ERV1 -454 326 1 4743 50 2 2 chr6 1338957 1339515 -187940039 - HERV17 LTR ERV1 -1 8625 8068 * 5669 62 3 1 chr6 1339506 1340198 -187939356 - HERV17 LTR ERV1 -3304 5322 4630 210 105 0 0 chr6 1340237 1340275 -187939279 + (TA)n Simple_repeat Simple_repeat 1 38 0 2032 135 0 30 chr6 1340751 1341054 -187938500 + AluSq SINE Alu 1 294 -19 2338 105 0 0 chr6 1341428 1341724 -187937830 - AluSg SINE Alu -14 296 1 1125 283 83 38 chr6 1342203 1342758 -187936796 + L1MC4a LINE L1 5298 5877 -1931 340 304 0 36 chr6 1343053 1343165 -187936389 + GA-rich Low_complexity Low_complexity 1 108 0 195 279 16 0 chr6 1344760 1344821 -187934733 - MIR3 SINE MIR -37 171 110 327 364 114 13 chr6 1345406 1345634 -187933920 + L3 LINE CR1 342 592 -985 687 237 46 98 chr6 1345686 1345958 -187933596 + L2 LINE L2 3006 3260 -53 2321 107 3 0 chr6 1345958 1346266 -187933288 + AluSx SINE Alu 1 309 -3 687 237 46 98 chr6 1346266 1346318 -187933236 + L2 LINE L2 3260 3313 0 741 296 35 43 chr6 1346332 1346677 -187932877 + L3 LINE CR1 682 1023 -554 342 251 97 58 chr6 1346724 1346871 -187932683 + L1MC4a LINE L1 5665 5824 -1984 1802 161 10 20 chr6 1346871 1347175 -187932379 + AluJb SINE Alu 1 301 -11 342 251 97 58 chr6 1347175 1347234 -187932320 + L1MC4a LINE L1 5824 5879 -1929 244 314 35 0 chr6 1347306 1347392 -187932162 + MER5A DNA MER1_type 18 106 -83 637 164 49 16 chr6 1347456 1347578 -187931976 - L1MB4 LINE L1 -3 6177 6052 227 357 143 9 chr6 1347679 1347791 -187931763 - L2 LINE L2 0 3272 3146 228 200 0 0 chr6 1347854 1347894 -187931660 + L1MB3 LINE L1 5551 5590 -722 2197 176 51 7 chr6 1347994 1348408 -187931146 + L1MA9 LINE L1 5832 6263 -49 1198 186 19 27 chr6 1349950 1350208 -187929346 + L1MCa LINE L1 6 261 -6165 * 4039 183 65 26 chr6 1350202 1351242 -187928312 + L1MCa LINE L1 775 1773 -4653 1495 185 26 15 chr6 1351242 1351512 -187928042 - AluJb SINE Alu -37 275 3 4039 183 65 26 chr6 1351512 1352627 -187926927 + L1MCa LINE L1 1773 3110 -3316 3378 225 5 16 chr6 1352614 1353409 -187926145 + L1MCa LINE L1 4145 4930 -1496 * 2476 138 14 32 chr6 1353469 1353862 -187925692 + L1MB3 LINE L1 5748 6134 -49 1584 186 0 38 chr6 1353862 1354180 -187925374 + AluJo SINE Alu 1 306 -6 2476 138 14 32 chr6 1354180 1354227 -187925327 + L1MB3 LINE L1 6134 6180 -3 426 20 0 0 chr6 1354799 1354850 -187924704 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 202 284 75 0 chr6 1354885 1354952 -187924602 - MIR SINE MIR -104 158 87 2173 108 0 3 chr6 1355922 1356209 -187923345 + AluSg SINE Alu 1 286 -24 288 0 0 0 chr6 1356458 1356490 -187923064 + (CA)n Simple_repeat Simple_repeat 1 32 0 6308 242 28 29 chr6 1358162 1360432 -187919122 + L1M4 LINE L1 16 2424 -4401 2598 97 8 0 chr6 1360432 1360784 -187918770 - THE1A LTR MaLR 0 355 1 4430 87 3 7 chr6 1360784 1361356 -187918198 - THE1A-int LTR MaLR 0 1580 1011 931 229 22 11 chr6 1361356 1361631 -187917923 + L1M4 LINE L1 3542 3819 -2825 8004 217 14 6 chr6 1361667 1363846 -187915708 + L1MB7 LINE L1 2108 4324 -2320 1292 154 14 10 chr6 1363836 1364137 -187915417 + L1MB7 LINE L1 4222 4432 -2212 * 257 174 0 0 chr6 1364144 1364190 -187915364 + GA-rich Low_complexity Low_complexity 3 48 0 454 126 0 23 chr6 1364310 1364397 -187915157 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1073 116 6 0 chr6 1364421 1364594 -187914960 + (GGGAA)n Simple_repeat Simple_repeat 1 174 0 4057 168 55 42 chr6 1364594 1365183 -187914371 + L1MB7 LINE L1 5699 6279 -403 2330 85 0 26 chr6 1365183 1365489 -187914065 + AluSx SINE Alu 1 298 -14 2033 120 53 0 chr6 1365499 1365783 -187913771 + AluSx SINE Alu 1 299 -13 4057 168 55 42 chr6 1365783 1366020 -187913534 + L1MB7 LINE L1 6287 6547 -135 2416 99 0 0 chr6 1366020 1366332 -187913222 + AluSp SINE Alu 1 312 -1 4057 168 55 42 chr6 1366332 1366383 -187913171 + L1MB7 LINE L1 6547 6596 -86 1419 164 50 23 chr6 1366383 1366645 -187912909 + Tigger2a DNA MER2_type 1 269 -165 482 201 54 0 chr6 1366648 1367462 -187912092 + (TA)n Simple_repeat Simple_repeat 1 857 0 324 135 0 0 chr6 1367489 1367541 -187912013 + L1MB8 LINE L1 6115 6166 -12 476 313 84 39 chr6 1367544 1367982 -187911572 - L1MC/D LINE L1 -2096 5712 5255 194 287 43 21 chr6 1368154 1368248 -187911306 + L2 LINE L2 1397 1492 -1822 10009 203 68 46 chr6 1368511 1368578 -187910976 - Charlie1 DNA MER1_type 0 2761 2697 1961 113 76 0 chr6 1368578 1368853 -187910701 + AluSx SINE Alu 3 298 -14 10009 203 68 46 chr6 1368853 1369562 -187909992 - Charlie1 DNA MER1_type -64 2697 2005 1251 212 59 14 chr6 1369562 1369850 -187909704 - AluJo SINE Alu -1 301 1 10009 203 68 46 chr6 1369850 1370519 -187909035 - Charlie1 DNA MER1_type -756 2005 1352 3784 60 2 2 chr6 1370519 1370989 -187908565 + L1PA5 LINE L1 5685 6154 0 10009 203 68 46 chr6 1370989 1371002 -187908552 - Charlie1 DNA MER1_type -1409 1352 1341 703 211 16 0 chr6 1371002 1371130 -187908424 + AluJo SINE Alu 1 130 -172 10009 203 68 46 chr6 1371130 1372364 -187907190 - Charlie1 DNA MER1_type -1420 1341 6 2029 168 13 3 chr6 1373283 1373669 -187905885 - MLT1B LTR MaLR 0 390 1 284 308 0 19 chr6 1373720 1373824 -187905730 + L2 LINE L2 3170 3271 -1 22 0 0 0 chr6 1374613 1374635 -187904919 + AT_rich Low_complexity Low_complexity 1 22 0 1620 192 7 16 chr6 1375614 1375921 -187903633 + AluJo SINE Alu 7 310 -2 1781 176 20 3 chr6 1376497 1376803 -187902751 - AluJb SINE Alu -1 311 1 268 242 0 0 chr6 1378336 1378398 -187901156 + L2 LINE L2 3250 3311 -2 2154 116 51 25 chr6 1378446 1378801 -187900753 - THE1B LTR MaLR 0 364 1 707 247 0 6 chr6 1378832 1378990 -187900564 + AluJo SINE Alu 136 292 -20 268 288 76 47 chr6 1379155 1379391 -187900163 + L1ME LINE L1 3931 4173 -1973 525 221 39 0 chr6 1379445 1379572 -187899982 + MER103 DNA DNA 35 166 0 309 356 46 16 chr6 1379713 1379907 -187899647 + MIR SINE MIR 14 213 -49 449 282 231 4 chr6 1379922 1380195 -187899359 + L1ME LINE L1 5412 5746 -375 371 236 57 57 chr6 1380482 1380622 -187898932 - L1M4 LINE L1 -2892 3254 3115 601 336 58 20 chr6 1380637 1381121 -187898433 + LTR67 LTR ERVL 22 557 0 415 291 67 62 chr6 1381124 1381560 -187897994 - L1M4 LINE L1 -3034 3112 2675 354 331 18 6 chr6 1381570 1381733 -187897821 + MER5A DNA MER1_type 1 165 -24 243 368 82 28 chr6 1381775 1381957 -187897597 - L3b LINE CR1 -61 1522 1331 611 291 34 6 chr6 1382383 1382562 -187896992 + MLT1L LTR MaLR 431 614 -1 215 346 79 0 chr6 1382652 1382779 -187896775 - L3b LINE CR1 -343 1240 1104 760 265 103 44 chr6 1383187 1383594 -187895960 + L2 LINE L2 2883 3313 0 292 351 70 52 chr6 1383742 1384087 -187895467 - MLT1K LTR MaLR -231 357 7 26 104 0 0 chr6 1384361 1384457 -187895097 + AT_rich Low_complexity Low_complexity 1 96 0 408 191 114 15 chr6 1384550 1384681 -187894873 + ORSL DNA AcHobo 1 144 -131 2236 71 7 0 chr6 1385923 1386240 -187893314 - AluSg SINE Alu 0 320 2 24 32 0 0 chr6 1387032 1387063 -187892491 + GC_rich Low_complexity Low_complexity 1 31 0 707 268 38 0 chr6 1387835 1388018 -187891536 - MIR SINE MIR -8 254 65 309 286 62 34 chr6 1389803 1389981 -187889573 + L1MC5 LINE L1 7749 7931 -30 23 33 0 0 chr6 1390659 1390689 -187888865 + GC_rich Low_complexity Low_complexity 1 30 0 319 259 0 0 chr6 1390758 1390843 -187888711 + G-rich Low_complexity Low_complexity 3 87 0 357 280 77 28 chr6 1394990 1395133 -187884421 + MIR SINE MIR 5 154 -108 315 0 0 0 chr6 1396056 1396091 -187883463 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 173 19 0 chr6 1397419 1397471 -187882083 + CT-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 1398668 1398689 -187880865 + (CCA)n Simple_repeat Simple_repeat 3 23 0 29 60 0 0 chr6 1398742 1398792 -187880762 + GC_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr6 1400360 1400403 -187879151 + (CA)n Simple_repeat Simple_repeat 1 43 0 1532 134 5 0 chr6 1405264 1405488 -187874066 - AluJo SINE Alu 0 312 88 805 197 26 57 chr6 1406295 1406488 -187873066 - MER5A DNA MER1_type 0 189 3 444 227 20 0 chr6 1407005 1407155 -187872399 + GA-rich Low_complexity Low_complexity 2 154 0 347 222 8 0 chr6 1407188 1407305 -187872249 + GA-rich Low_complexity Low_complexity 2 119 0 223 226 0 36 chr6 1407336 1407420 -187872134 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr6 1407896 1407919 -187871635 + AT_rich Low_complexity Low_complexity 1 23 0 1955 213 12 5 chr6 1408840 1409268 -187870286 + L1MA7 LINE L1 5371 5801 -490 423 200 27 0 chr6 1409271 1409346 -187870208 - Charlie3 DNA MER1_type -8 2702 2626 2083 177 58 33 chr6 1409357 1409842 -187869712 + L1MA7 LINE L1 5795 6291 0 768 179 0 0 chr6 1410593 1410908 -187868646 + (CA)n Simple_repeat Simple_repeat 1 315 0 713 171 0 11 chr6 1410955 1411136 -187868418 + (CA)n Simple_repeat Simple_repeat 2 180 0 588 218 0 0 chr6 1411178 1411538 -187868016 + (CA)n Simple_repeat Simple_repeat 1 360 0 263 321 0 21 chr6 1411545 1411685 -187867869 + (CATA)n Simple_repeat Simple_repeat 2 138 0 496 212 6 6 chr6 1411689 1411868 -187867686 + (CA)n Simple_repeat Simple_repeat 1 179 0 1749 171 74 15 chr6 1412715 1413093 -187866461 - MLT1B LTR MaLR -8 382 1 2300 108 0 0 chr6 1413927 1414222 -187865332 + AluSx SINE Alu 1 295 -17 2272 74 7 17 chr6 1416447 1416746 -187862808 + AluY SINE Alu 1 296 -15 2370 64 4 0 chr6 1418572 1418892 -187860662 + AluY SINE Alu 1 321 0 784 176 56 42 chr6 1419127 1419343 -187860211 + MER20 DNA MER1_type 1 219 0 1855 148 0 48 chr6 1419402 1419713 -187859841 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr6 1419713 1419734 -187859820 + AT_rich Low_complexity Low_complexity 1 21 0 1987 151 3 7 chr6 1419745 1420043 -187859511 + AluJo SINE Alu 1 297 -15 480 264 85 0 chr6 1421089 1421218 -187858336 - Charlie8 DNA MER1_type -2273 144 5 298 333 67 9 chr6 1423298 1423403 -187856151 + MIR3 SINE MIR 95 205 -3 538 287 96 57 chr6 1423707 1423916 -187855638 - MIR SINE MIR -31 231 15 800 137 8 15 chr6 1424571 1424702 -187854852 + AluSq/x SINE Alu 2 131 -181 266 275 22 11 chr6 1424904 1424995 -187854559 - MIR SINE MIR -122 140 49 225 0 0 0 chr6 1425718 1425743 -187853811 + (TG)n Simple_repeat Simple_repeat 2 26 0 387 137 4 39 chr6 1425744 1425830 -187853724 - FLAM_A SINE Alu -1 132 54 2050 126 3 0 chr6 1425871 1426181 -187853373 - AluSx SINE Alu -1 311 1 717 135 23 23 chr6 1426190 1426323 -187853231 - FLAM_C SINE Alu 0 133 1 651 284 12 0 chr6 1426850 1427019 -187852535 - MER58A DNA MER1_type -9 215 45 196 200 0 100 chr6 1427217 1427267 -187852287 - MIR SINE MIR -2 260 216 695 194 58 13 chr6 1427297 1427452 -187852102 + FRAM SINE Alu 1 161 -15 363 269 112 30 chr6 1427508 1427642 -187851912 - MIR SINE MIR -96 166 22 285 315 112 12 chr6 1427663 1427833 -187851721 + MIR SINE MIR 43 228 -34 1730 144 33 23 chr6 1427900 1428205 -187851349 + MER44D DNA MER2_type 32 609 0 4251 181 81 12 chr6 1428221 1429886 -187849668 - L1MB8 LINE L1 -54 6124 4346 23 0 0 0 chr6 1429886 1429909 -187849645 + AT_rich Low_complexity Low_complexity 1 23 0 436 256 75 67 chr6 1429915 1430169 -187849385 - L1M4 LINE L1 -1616 4530 4275 21 36 0 0 chr6 1430218 1430246 -187849308 + AT_rich Low_complexity Low_complexity 1 28 0 200 231 0 58 chr6 1430342 1430394 -187849160 - L2 LINE L2 0 3313 3265 * 282 234 0 0 chr6 1430371 1430439 -187849115 + MIR SINE MIR 24 91 -117 619 256 106 0 chr6 1430444 1430624 -187848930 + MIR SINE MIR 64 262 0 220 271 158 55 chr6 1430636 1431034 -187848520 - L2 LINE L2 -56 3257 2819 1460 167 23 20 chr6 1431155 1431455 -187848099 - L1MA5 LINE L1 -19 6281 5981 271 297 156 21 chr6 1431529 1431909 -187847645 - MLT1H1 LTR MaLR -4 551 103 812 256 56 16 chr6 1432533 1432783 -187846771 + MIR SINE MIR 2 261 -1 1308 120 69 0 chr6 1432783 1432999 -187846555 + Tigger4(Zombi) DNA MER2_type 1 231 -2500 1886 89 44 173 chr6 1433001 1433207 -187846347 + Tigger4(Zombi) DNA MER2_type 2333 2457 -274 1947 142 0 0 chr6 1433207 1433518 -187846036 - AluSx SINE Alu -1 311 1 1886 89 44 173 chr6 1433518 1433740 -187845814 + Tigger4(Zombi) DNA MER2_type 2457 2706 -25 2095 110 3 3 chr6 1435345 1435646 -187843908 - AluSq SINE Alu -12 301 1 1722 159 3 16 chr6 1435663 1435978 -187843576 + AluJb SINE Alu 1 311 -1 936 181 0 0 chr6 1436361 1436538 -187843016 - AluJ SINE Alu -16 296 120 45480 32 3 1 chr6 1436540 1442676 -187836878 - L1PA3 LINE L1 -8 6147 1 731 187 0 15 chr6 1442682 1442816 -187836738 - AluJ SINE Alu -170 132 1 245 296 51 0 chr6 1442956 1443054 -187836500 + MIR SINE MIR 105 207 -55 2913 199 65 21 chr6 1443341 1443429 -187836125 + L1MB3 LINE L1 5495 5578 -605 2099 112 3 0 chr6 1443429 1443723 -187835831 + AluSx SINE Alu 1 295 -17 2913 199 65 21 chr6 1443723 1444292 -187835262 + L1MB3 LINE L1 5578 6181 -2 859 129 0 30 chr6 1445221 1445353 -187834201 - AluJ SINE Alu -174 128 1 220 53 53 0 chr6 1446016 1446054 -187833500 + C-rich Low_complexity Low_complexity 39 78 0 442 268 263 16 chr6 1446056 1446634 -187832920 + L2 LINE L2 1928 2648 -666 187 254 0 16 chr6 1447030 1447093 -187832461 + L2 LINE L2 3198 3259 -54 1782 243 27 78 chr6 1447127 1447277 -187832277 + L1ME1 LINE L1 5240 5396 -770 382 157 36 0 chr6 1447277 1447360 -187832194 + L1MB3 LINE L1 6096 6181 -2 1782 243 27 78 chr6 1447360 1447806 -187831748 + L1ME1 LINE L1 5396 5797 -369 1766 144 53 0 chr6 1447806 1448090 -187831464 + AluSx SINE Alu 1 299 -13 1782 243 27 78 chr6 1448090 1448328 -187831226 + L1ME1 LINE L1 5797 6046 -120 602 258 5 75 chr6 1448494 1448610 -187830944 + MER45A DNA AcHobo 1 102 -1479 2103 96 0 0 chr6 1448610 1448925 -187830629 - AluSg SINE Alu 0 315 1 602 258 5 75 chr6 1448925 1448993 -187830561 + MER45A DNA AcHobo 102 173 -5 688 253 135 47 chr6 1449509 1449806 -187829748 + MER2 DNA MER2_type 2 324 -21 733 131 57 0 chr6 1449875 1449997 -187829557 + LOR1a LTR ERV1 1 129 -368 * 1561 139 80 24 chr6 1449995 1450064 -187829490 + LOR1b LTR ERV1 158 222 -239 2199 131 56 8 chr6 1450064 1450422 -187829132 - THE1C LTR MaLR 0 375 1 1561 139 80 24 chr6 1450422 1450640 -187828914 + LOR1b LTR ERV1 222 461 0 257 213 227 0 chr6 1450677 1450752 -187828802 - MER5A DNA MER1_type -89 100 9 225 296 45 45 chr6 1450813 1450901 -187828653 + MIR SINE MIR 44 131 -131 430 248 67 0 chr6 1451001 1451106 -187828448 - MIR SINE MIR -98 164 53 1690 145 0 4 chr6 1451118 1451387 -187828167 - AluJb SINE Alu -13 299 32 388 222 118 30 chr6 1451601 1451736 -187827818 - HAL1b LINE L1 -1 1347 1201 21 36 0 0 chr6 1451898 1451926 -187827628 + AT_rich Low_complexity Low_complexity 1 28 0 398 324 67 57 chr6 1451951 1452250 -187827304 - L1ME LINE L1 -547 5574 5273 1868 104 26 0 chr6 1452301 1452570 -187826984 + AluSx SINE Alu 30 305 -7 255 318 15 8 chr6 1452654 1452786 -187826768 - L1ME LINE L1 -1071 5075 4943 917 251 77 40 chr6 1452877 1453256 -187826298 - L1ME1 LINE L1 -15 6151 5759 1820 193 110 68 chr6 1453256 1453800 -187825754 + LTR60 LTR ERV1 1 567 -19 979 267 69 57 chr6 1453847 1454323 -187825231 - L1ME1 LINE L1 -419 5765 5284 368 311 45 42 chr6 1454351 1454708 -187824846 - L1ME LINE L1 -1299 4847 4490 3874 107 17 72 chr6 1455071 1455174 -187824380 - L1PB3 LINE L1 -23 6131 6024 1840 158 0 3 chr6 1455174 1455477 -187824077 - AluJb SINE Alu -10 302 1 3874 107 17 72 chr6 1455477 1455579 -187823975 - L1PB3 LINE L1 -130 6024 5624 651 260 60 91 chr6 1455579 1455765 -187823789 - L1MC2 LINE L1 -391 5953 5763 2591 39 0 0 chr6 1455765 1456076 -187823478 - AluY SINE Alu 0 311 1 651 260 60 91 chr6 1456076 1456405 -187823149 - L1MC2 LINE L1 -581 5763 5454 496 237 132 7 chr6 1456850 1457002 -187822552 - MLT1J LTR MaLR -15 496 326 554 253 33 20 chr6 1457066 1457216 -187822338 - MLT1J LTR MaLR -352 159 8 496 248 97 7 chr6 1457472 1457617 -187821937 - MLT1I LTR MaLR -210 199 42 1445 204 32 3 chr6 1458233 1458542 -187821012 - LTR23 LTR ERV1 -3 434 117 1373 156 124 0 chr6 1458545 1458802 -187820752 + AluJb SINE Alu 12 300 -12 468 153 135 0 chr6 1458807 1458918 -187820636 - LTR23 LTR ERV1 -311 126 1 425 335 25 37 chr6 1459086 1459331 -187820223 - MLT1J1 LTR MaLR -13 433 192 1591 188 114 112 chr6 1459341 1459971 -187819583 - LTR8A LTR ERV1 -3 724 94 2770 131 66 31 chr6 1459971 1460507 -187819047 - LTR35 LTR ERV1 0 618 1 377 211 79 0 chr6 1460507 1460583 -187818971 - LTR8 LTR ERV1 -609 82 1 1247 143 52 13 chr6 1460604 1460834 -187818720 - MLT1B LTR MaLR -12 378 140 2921 188 20 5 chr6 1460836 1461422 -187818132 + LTR49 LTR ERV1 1 595 0 4288 148 60 65 chr6 1461424 1462670 -187816884 + LTR49-int LTR ERV1 1 1470 -4476 707 143 21 43 chr6 1462672 1462812 -187816742 + FLAM_C SINE Alu 2 138 -5 2145 97 0 3 chr6 1462844 1463133 -187816421 - AluSx SINE Alu -24 288 1 282 306 14 0 chr6 1463212 1463284 -187816270 + tRNA-Glu-GAG tRNA tRNA 3 75 0 3870 199 31 44 chr6 1463284 1464166 -187815388 + MER57B-int LTR ERV1 1563 2432 -3899 1472 110 18 9 chr6 1464175 1464394 -187815160 - pTR5 LTR ERV1 -2046 392 172 317 169 73 83 chr6 1464399 1464495 -187815059 - LTR30 LTR ERV1 -77 702 544 4913 121 28 24 chr6 1464500 1465458 -187814096 - pTR5 LTR ERV1 -418 2020 743 1086 156 142 14 chr6 1465455 1465667 -187813887 + MER57B-int LTR ERV1 2436 2674 -3657 * 767 206 0 0 chr6 1465680 1465806 -187813748 + AluJ SINE Alu 2 127 -185 310 208 54 92 chr6 1465820 1465950 -187813604 + L1MCa LINE L1 1941 2065 -4361 302 124 72 10 chr6 1465950 1466047 -187813507 + (TA)n Simple_repeat Simple_repeat 1 103 0 872 187 24 0 chr6 1466051 1466217 -187813337 + AluJ SINE Alu 131 300 -12 6017 157 28 84 chr6 1466218 1467654 -187811900 + MER57B-int LTR ERV1 2666 4020 -2311 1962 117 36 23 chr6 1467654 1467961 -187811593 - L1PA15 LINE L1 -1 6164 5854 6017 157 28 84 chr6 1467961 1467996 -187811558 + MER57B-int LTR ERV1 4020 4055 -2276 13056 120 28 18 chr6 1468003 1468871 -187810683 + MER57B-int LTR ERV1 4210 5068 -1263 2067 121 3 0 chr6 1468871 1469169 -187810385 - AluSx SINE Alu -13 299 1 13056 120 28 18 chr6 1469169 1469648 -187809906 + MER57B-int LTR ERV1 5068 5541 -790 2870 138 5 5 chr6 1469648 1470082 -187809472 + MER57B LTR ERV1 1 434 0 13056 120 28 18 chr6 1470082 1470671 -187808883 + MER57B-int LTR ERV1 5541 6172 -159 2156 111 0 3 chr6 1470671 1470969 -187808585 + AluSq SINE Alu 1 297 -16 13056 120 28 18 chr6 1470969 1471131 -187808423 + MER57B-int LTR ERV1 6172 6331 0 2435 140 44 2 chr6 1471131 1471539 -187808015 + LTR49 LTR ERV1 1 425 -170 1005 123 0 0 chr6 1471543 1471689 -187807865 + AluSg/x SINE Alu 162 307 -5 700 174 112 12 chr6 1471689 1471850 -187807704 + LTR49 LTR ERV1 419 595 0 775 153 0 60 chr6 1471850 1472000 -187807554 - MLT1B LTR MaLR -249 141 1 2326 61 7 0 chr6 1472440 1472735 -187806819 + AluY SINE Alu 1 297 -14 2262 157 130 46 chr6 1473321 1473602 -187805952 - LTR49 LTR ERV1 0 595 339 1648 146 66 10 chr6 1473602 1473890 -187805664 + AluSx SINE Alu 1 304 -8 2262 157 130 46 chr6 1473890 1474155 -187805399 - LTR49 LTR ERV1 -256 339 3 4559 128 51 69 chr6 1474367 1474724 -187804830 - MER4D LTR ERV1 0 903 541 1945 139 0 0 chr6 1474724 1475019 -187804535 + AluJb SINE Alu 1 295 -17 4559 128 51 69 chr6 1475019 1475258 -187804296 - MER4D LTR ERV1 -362 541 299 2230 104 0 0 chr6 1475258 1475555 -187803999 - AluSq SINE Alu -16 297 1 4559 128 51 69 chr6 1475555 1475876 -187803678 - MER4D LTR ERV1 -604 299 1 1708 185 21 108 chr6 1475986 1476528 -187803026 - MER4A LTR ERV1 -3 695 161 2225 89 0 0 chr6 1476528 1476820 -187802734 - AluSq SINE Alu -12 301 10 1708 185 21 108 chr6 1476820 1476969 -187802585 - MER4A LTR ERV1 -537 161 1 296 288 27 51 chr6 1477228 1477452 -187802102 - L1MC4a LINE L1 -349 5825 5689 384 309 88 34 chr6 1478871 1478989 -187800565 - MIR SINE MIR 0 262 127 1949 217 65 26 chr6 1478989 1479524 -187800030 + LTR38 LTR ERV1 1 556 0 384 309 88 34 chr6 1479524 1479609 -187799945 - MIR SINE MIR -135 127 48 1050 153 5 16 chr6 1480402 1480592 -187798962 + L1MB3 LINE L1 5976 6163 -20 877 108 38 25 chr6 1480601 1481103 -187798451 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 3212 147 31 7 chr6 1481627 1482212 -187797342 - L1MB3 LINE L1 0 6183 5585 3442 193 70 91 chr6 1482684 1483401 -187796153 + L1MD2 LINE L1 5336 6067 -292 4453 55 2 4 chr6 1483401 1483949 -187795605 + L1PA8 LINE L1 5622 6168 -4 198 0 0 0 chr6 1483952 1483974 -187795580 + (CA)n Simple_repeat Simple_repeat 1 22 0 3442 193 70 91 chr6 1483974 1484288 -187795266 + L1MD2 LINE L1 6069 6349 -10 226 271 34 0 chr6 1484612 1484671 -187794883 + (CATG)n Simple_repeat Simple_repeat 2 62 0 266 317 110 24 chr6 1535103 1535267 -187744287 - MLT1I LTR MaLR 0 409 232 2722 112 60 0 chr6 1535556 1535958 -187743596 - MSTA LTR MaLR -2 426 1 497 276 35 0 chr6 1536046 1536216 -187743338 + MIR SINE MIR 87 262 0 32 26 0 0 chr6 1536560 1536599 -187742955 + AT_rich Low_complexity Low_complexity 1 39 0 1505 156 30 50 chr6 1536599 1536763 -187742791 - AluJo SINE Alu -16 296 139 1819 87 9 0 chr6 1536763 1536993 -187742561 - AluSp SINE Alu -11 302 71 1505 156 30 50 chr6 1536993 1537130 -187742424 - AluJo SINE Alu -173 139 1 242 257 29 0 chr6 1537681 1537751 -187741803 + LTR67 LTR ERVL 431 502 -55 595 268 168 9 chr6 1537883 1538282 -187741272 + Charlie2 DNA MER1_type 74 589 -2273 955 224 53 86 chr6 1538325 1538525 -187741029 + Charlie2 DNA MER1_type 2030 2235 -627 1617 165 49 8 chr6 1538525 1538792 -187740762 + AluJo SINE Alu 1 278 -34 955 224 53 86 chr6 1538792 1539077 -187740477 + Charlie2 DNA MER1_type 2235 2499 -363 1277 205 52 46 chr6 1539077 1539404 -187740150 + L1MB8 LINE L1 5849 6177 -1 1679 171 3 24 chr6 1539413 1539705 -187739849 + AluJo SINE Alu 1 286 -26 204 40 0 0 chr6 1539714 1539739 -187739815 + (CA)n Simple_repeat Simple_repeat 2 26 0 471 254 30 60 chr6 1539739 1539964 -187739590 + Charlie2 DNA MER1_type 2502 2721 -141 1592 271 135 6 chr6 1539965 1540460 -187739094 + MER69 DNA AcHobo 1 559 -667 233 242 152 38 chr6 1540430 1540562 -187738992 + MER69 DNA AcHobo 2254 2400 -126 * 363 134 20 174 chr6 1540554 1540620 -187738934 + Charlie2 DNA MER1_type 2736 2768 -94 1743 114 0 0 chr6 1540620 1540848 -187738706 + AluSc SINE Alu 65 292 -17 363 134 20 174 chr6 1540848 1540930 -187738624 + Charlie2 DNA MER1_type 2768 2861 -1 1779 281 90 52 chr6 1541042 1541368 -187738186 + HERVL LTR ERVL 2050 2362 -3402 2408 93 3 0 chr6 1541368 1541678 -187737876 + AluY SINE Alu 1 311 0 1779 281 90 52 chr6 1541678 1542176 -187737378 + HERVL LTR ERVL 2362 2905 -2859 360 43 0 0 chr6 1542288 1542334 -187737220 + (TG)n Simple_repeat Simple_repeat 1 46 0 1525 149 29 58 chr6 1542396 1542705 -187736849 + AluJo SINE Alu 1 300 -12 266 230 103 58 chr6 1542706 1542793 -187736761 + HERVL LTR ERVL 3139 3229 -2535 386 328 54 17 chr6 1542907 1543153 -187736401 + HERVL LTR ERVL 5111 5369 -221 439 313 20 7 chr6 1544005 1544155 -187735399 + LTR67 LTR ERVL 385 536 -21 207 172 0 69 chr6 1544559 1544617 -187734937 + CT-rich Low_complexity Low_complexity 3 56 0 2366 79 3 7 chr6 1545254 1545558 -187733996 + AluSp SINE Alu 1 303 -10 339 44 0 0 chr6 1546666 1546711 -187732843 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 802 166 14 21 chr6 1546711 1546856 -187732698 - FRAM SINE Alu -32 144 1 242 299 39 26 chr6 1546898 1547052 -187732502 - MIR SINE MIR -19 243 88 2292 97 10 0 chr6 1547329 1547628 -187731926 + AluSx SINE Alu 1 302 -10 30 27 0 0 chr6 1547628 1547665 -187731889 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 1547905 1547930 -187731624 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1968 151 143 5 chr6 1548069 1548441 -187731113 + MSTA LTR MaLR 6 428 0 21 36 0 0 chr6 1548460 1548488 -187731066 + AT_rich Low_complexity Low_complexity 1 28 0 1987 151 0 0 chr6 1548488 1548773 -187730781 - AluSx SINE Alu -27 285 1 1527 229 65 26 chr6 1548776 1549343 -187730211 - L1MC5 LINE L1 -58 7903 7315 273 302 128 29 chr6 1549501 1549673 -187729881 + MIR SINE MIR 20 208 -54 789 204 56 45 chr6 1549696 1550086 -187729468 - MSTD LTR MaLR -52 344 1 876 185 49 19 chr6 1550715 1550920 -187728634 + MIR SINE MIR 24 234 -28 189 325 112 48 chr6 1551145 1551351 -187728203 + L2 LINE L2 2945 3163 -109 411 301 30 63 chr6 1551665 1551967 -187727587 - L1ME3A LINE L1 -232 5938 5647 247 211 35 0 chr6 1551991 1552048 -187727506 + L2 LINE L2 3214 3272 0 276 269 86 107 chr6 1552701 1552898 -187726656 - MLT1L LTR MaLR -415 200 8 2503 69 3 28 chr6 1553824 1554143 -187725411 + AluY SINE Alu 1 311 0 1025 252 79 84 chr6 1554224 1555018 -187724536 + L1MEc LINE L1 827 1617 -4779 1716 162 32 19 chr6 1555018 1555326 -187724228 + AluJo SINE Alu 1 312 0 1025 252 79 84 chr6 1555326 1555502 -187724052 + L1MEc LINE L1 1617 1792 -4604 1420 208 46 8 chr6 1555563 1555914 -187723640 - L1M4 LINE L1 -1394 5563 5200 870 92 108 0 chr6 1555938 1556058 -187723496 + AluSq/x SINE Alu 1 133 -179 2289 113 3 0 chr6 1556083 1556385 -187723169 + AluSp SINE Alu 1 303 -10 6060 114 28 3 chr6 1556392 1556605 -187722949 - L1M1 LINE L1 -4099 3466 3260 1886 164 13 13 chr6 1556605 1556909 -187722645 - AluJb SINE Alu -6 306 3 6060 114 28 3 chr6 1556909 1557653 -187721901 - L1M1 LINE L1 -4305 3260 2485 5570 239 38 32 chr6 1557658 1559191 -187720363 - L1M4 LINE L1 -2451 4506 3018 810 50 0 0 chr6 1559191 1559292 -187720262 + L1PA5 LINE L1 6053 6153 -1 5570 239 38 32 chr6 1559292 1559838 -187719716 - L1M4 LINE L1 -3939 3018 2476 7649 223 52 20 chr6 1560018 1562303 -187717251 - L1M4 LINE L1 -4550 2409 9 781 239 117 4 chr6 1562459 1562828 -187716726 + MLT1G LTR MaLR 144 589 -1 819 218 88 10 chr6 1563460 1563653 -187715901 - Charlie8 DNA MER1_type -2209 208 1 212 292 0 0 chr6 1568924 1568996 -187710558 + L3 LINE CR1 1080 1151 -426 236 309 95 16 chr6 1571276 1571528 -187708026 + L1ME LINE L1 5615 5886 -284 2173 124 7 7 chr6 1571545 1571844 -187707710 + AluSq SINE Alu 1 299 -14 534 329 67 53 chr6 1572079 1572228 -187707326 + L1MC4a LINE L1 4410 4556 -1590 2377 93 0 3 chr6 1572228 1572530 -187707024 + AluSx SINE Alu 1 301 -11 534 329 67 53 chr6 1572530 1573147 -187706407 + L1MC4a LINE L1 4556 5186 -960 347 162 20 40 chr6 1573164 1573263 -187706291 + L1MC5 LINE L1 7636 7732 -229 216 214 0 0 chr6 1573279 1573335 -187706219 + (CA)n Simple_repeat Simple_repeat 1 56 0 1423 277 97 11 chr6 1573453 1574118 -187705436 + L1MC4a LINE L1 5175 5398 -748 1854 142 13 13 chr6 1576236 1576545 -187703009 - AluJo SINE Alu -1 311 3 354 211 24 8 chr6 1576752 1577007 -187702547 + (TG)n Simple_repeat Simple_repeat 1 259 0 2062 143 0 6 chr6 1577894 1578208 -187701346 - AluSx SINE Alu 0 312 1 231 264 138 46 chr6 1578210 1578297 -187701257 - L2 LINE L2 -2 3270 3176 213 265 20 0 chr6 1578580 1578629 -187700925 + L2 LINE L2 3240 3289 -24 195 42 0 0 chr6 1578726 1578750 -187700804 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1331 230 83 49 chr6 1580343 1580611 -187698943 - MER82 DNA MER2_type -203 450 160 1755 167 16 32 chr6 1580611 1580923 -187698631 + AluJo SINE Alu 1 307 -5 1331 230 83 49 chr6 1580923 1581085 -187698469 - MER82 DNA MER2_type -493 160 5 453 19 0 0 chr6 1581907 1581961 -187697593 + (CA)n Simple_repeat Simple_repeat 1 54 0 1809 181 48 0 chr6 1582017 1582348 -187697206 + L1PA16 LINE L1 5802 6148 -18 487 245 10 50 chr6 1582353 1582553 -187697001 + L1MC4 LINE L1 7472 7663 -379 231 114 0 0 chr6 1583418 1583453 -187696101 + (TG)n Simple_repeat Simple_repeat 1 35 0 274 312 54 48 chr6 1585211 1585397 -187694157 + Charlie2 DNA MER1_type 30 216 -2646 457 165 0 0 chr6 1586204 1586283 -187693271 + HY4 scRNA scRNA 5 83 -10 306 0 0 0 chr6 1590081 1590115 -187689439 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr6 1590114 1590134 -187689420 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 246 259 0 0 chr6 1590134 1590192 -187689362 + (TA)n Simple_repeat Simple_repeat 2 59 0 190 347 53 0 chr6 1591869 1591944 -187687610 + MIR3 SINE MIR 89 167 -41 203 138 0 0 chr6 1592091 1592120 -187687434 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 206 333 39 0 chr6 1592536 1592614 -187686940 + L2 LINE L2 3233 3313 0 356 274 98 13 chr6 1592625 1592778 -187686776 + MER104 DNA Tc2 8 173 -7 408 314 65 0 chr6 1592803 1592956 -187686598 + MIR SINE MIR 80 242 -20 48 32 0 0 chr6 1599270 1599332 -187680222 + GC_rich Low_complexity Low_complexity 1 62 0 42 20 0 0 chr6 1599575 1599624 -187679930 + GC_rich Low_complexity Low_complexity 1 49 0 252 119 0 75 chr6 1599908 1599986 -187679568 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 31 0 0 0 chr6 1600113 1600144 -187679410 + GC_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 1600614 1600655 -187678899 + GC_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr6 1600904 1600943 -187678611 + GC_rich Low_complexity Low_complexity 1 39 0 221 120 20 20 chr6 1601158 1601208 -187678346 + (CGG)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 1601274 1601299 -187678255 + GC_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr6 1601373 1601397 -187678157 + (CGG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr6 1601497 1601517 -187678037 + (CGG)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr6 1604126 1604149 -187675405 + GC_rich Low_complexity Low_complexity 1 23 0 220 220 20 0 chr6 1608284 1608334 -187671220 + GA-rich Low_complexity Low_complexity 5 55 0 254 327 13 0 chr6 1611990 1612146 -187667408 + (TG)n Simple_repeat Simple_repeat 1 158 0 261 312 13 0 chr6 1612785 1612862 -187666692 + L2 LINE L2 3236 3313 0 243 0 0 0 chr6 1614418 1614445 -187665109 + (T)n Simple_repeat Simple_repeat 1 27 0 257 232 50 99 chr6 1614791 1614972 -187664582 + MER112 DNA MER1_type 29 200 -60 255 229 0 0 chr6 1615274 1615335 -187664219 + GA-rich Low_complexity Low_complexity 4 64 0 206 152 0 22 chr6 1621225 1621271 -187658283 + CT-rich Low_complexity Low_complexity 2 46 0 811 253 69 30 chr6 1621870 1622174 -187657380 + L1ME2 LINE L1 5839 6154 -10 1861 171 3 10 chr6 1622185 1622483 -187657071 + AluJo SINE Alu 1 296 -16 189 282 175 10 chr6 1622556 1622659 -187656895 + MIR SINE MIR 100 219 -43 292 370 146 0 chr6 1622974 1623336 -187656218 - L2 LINE L2 -48 3265 2851 471 341 41 25 chr6 1624240 1624554 -187655000 - L2 LINE L2 -562 2752 2434 231 333 81 16 chr6 1627436 1627559 -187651995 - MIR SINE MIR -128 134 4 257 333 74 22 chr6 1628932 1629067 -187650487 - L2 LINE L2 -219 3053 2912 218 227 109 126 chr6 1629163 1629195 -187650359 + MIR SINE MIR 22 53 -209 1666 151 37 0 chr6 1629195 1629491 -187650063 + AluJb SINE Alu 1 306 0 218 227 109 126 chr6 1629491 1629576 -187649978 + MIR SINE MIR 53 138 -124 208 252 193 37 chr6 1630269 1630404 -187649150 - L2 LINE L2 -54 3259 3104 310 115 33 0 chr6 1631294 1631355 -187648199 + CT-rich Low_complexity Low_complexity 2 64 0 2216 104 0 25 chr6 1631741 1632058 -187647496 - AluSx SINE Alu -3 309 1 274 237 86 21 chr6 1633094 1633187 -187646367 + L1MA8 LINE L1 5961 6059 -232 * 943 236 46 4 chr6 1633182 1633419 -187646135 + L1MB8 LINE L1 5932 6178 0 314 227 75 37 chr6 1634411 1634520 -187645034 - MIR SINE MIR -55 153 45 2316 79 0 13 chr6 1634520 1634823 -187644731 - AluSg SINE Alu -11 299 1 314 227 75 37 chr6 1634823 1634836 -187644718 - MIR SINE MIR -163 45 34 257 277 15 0 chr6 1635551 1635616 -187643938 + L2 LINE L2 3241 3306 -7 1388 167 151 12 chr6 1636022 1636273 -187643281 - AluJo SINE Alu -16 286 1 2377 76 0 3 chr6 1689852 1690141 -187589413 - AluY SINE Alu -23 288 1 948 164 12 6 chr6 1692931 1693096 -187586458 + MLT1D LTR MaLR 340 505 0 25 31 0 0 chr6 1693474 1693506 -187586048 + AT_rich Low_complexity Low_complexity 1 32 0 230 54 0 27 chr6 1694585 1694622 -187584932 + (TA)n Simple_repeat Simple_repeat 2 37 0 2230 98 0 7 chr6 1697886 1698067 -187581487 - AluY SINE Alu -8 303 123 180 0 0 0 chr6 1698067 1698087 -187581467 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2230 98 0 7 chr6 1698087 1698210 -187581344 - AluY SINE Alu -188 123 1 413 291 0 10 chr6 1698232 1698335 -187581219 + L2 LINE L2 3156 3257 -15 771 243 37 28 chr6 1698340 1698554 -187581000 - MIR SINE MIR -9 253 38 2126 58 0 12 chr6 1699153 1699410 -187580144 - AluY SINE Alu -15 296 43 2285 84 7 7 chr6 1701259 1701555 -187577999 - AluSp SINE Alu -17 296 1 217 359 0 16 chr6 1701572 1701636 -187577918 - L2 LINE L2 -92 3180 3118 212 119 34 68 chr6 1702666 1702725 -187576829 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr6 1704045 1704069 -187575485 + AT_rich Low_complexity Low_complexity 1 24 0 498 279 0 0 chr6 1704562 1704673 -187574881 - MER58C DNA MER1_type -2 213 103 201 245 0 20 chr6 1704673 1704722 -187574832 + CT-rich Low_complexity Low_complexity 3 50 0 199 47 0 70 chr6 1704770 1704813 -187574741 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 931 209 138 12 chr6 1706030 1706283 -187573271 + HAL1 LINE L1 3 287 -2220 2904 264 129 52 chr6 1706365 1707869 -187571685 + HAL1 LINE L1 473 2133 -374 2401 81 0 3 chr6 1707869 1708177 -187571377 + AluSc SINE Alu 1 307 -2 2904 264 129 52 chr6 1708177 1708426 -187571128 + HAL1 LINE L1 2133 2361 -146 1593 139 9 118 chr6 1709358 1709689 -187569865 + AluSx SINE Alu 1 295 -17 487 329 50 25 chr6 1711082 1711365 -187568189 - L2 LINE L2 -13 3259 2970 219 245 19 0 chr6 1712140 1712193 -187567361 + GA-rich Low_complexity Low_complexity 1 54 0 937 106 17 11 chr6 1713311 1713665 -187565889 + (CA)n Simple_repeat Simple_repeat 1 356 0 966 109 14 16 chr6 1713683 1714041 -187565513 + (CA)n Simple_repeat Simple_repeat 1 357 0 339 244 11 0 chr6 1715046 1715136 -187564418 + MIR SINE MIR 53 143 -119 2457 84 0 0 chr6 1716098 1716395 -187563159 + AluSx SINE Alu 1 297 -15 421 158 49 0 chr6 1716759 1716841 -187562713 - Charlie5 DNA MER1_type -1366 1246 1161 2142 162 21 9 chr6 1716872 1717297 -187562257 - L1MA6 LINE L1 -6 6294 5865 2521 90 0 3 chr6 1717352 1717664 -187561890 + AluSx SINE Alu 1 311 -1 206 170 0 57 chr6 1717689 1717742 -187561812 + A-rich Low_complexity Low_complexity 1 50 0 2323 101 0 0 chr6 1717747 1718043 -187561511 - AluSg SINE Alu -14 296 1 258 367 35 6 chr6 1718548 1718717 -187560837 - MER5A DNA MER1_type 0 189 16 2339 38 42 7 chr6 1719095 1719384 -187560170 + AluY SINE Alu 1 299 -12 25 0 0 0 chr6 1719953 1719978 -187559576 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr6 1720790 1720827 -187558727 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 85 0 0 chr6 1722513 1722823 -187556731 - AluSg SINE Alu 0 310 1 207 220 0 0 chr6 1723283 1723333 -187556221 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 278 88 49 chr6 1724021 1724305 -187555249 - HAL1b LINE L1 -1036 312 18 692 176 101 14 chr6 1724408 1724556 -187554998 - MER58B DNA MER1_type 0 341 181 1976 134 13 22 chr6 1725129 1725442 -187554112 + AluSx SINE Alu 1 310 -2 1295 213 14 14 chr6 1725657 1725944 -187553610 - AluJo SINE Alu -15 297 11 29706 95 30 14 chr6 1726115 1727307 -187552247 + L1P3 LINE L1 11 1182 -5287 196 100 0 0 chr6 1727307 1727337 -187552217 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2184 115 0 0 chr6 1727337 1727615 -187551939 - AluSc SINE Alu -31 278 1 29706 95 30 14 chr6 1727615 1731995 -187547559 + L1P3 LINE L1 1181 5712 -757 591 249 173 76 chr6 1732022 1732089 -187547465 - MLT1H LTR MaLR 0 555 496 2290 95 0 26 chr6 1732089 1732395 -187547159 - AluSq SINE Alu -15 298 1 591 249 173 76 chr6 1732395 1732868 -187546686 - MLT1H LTR MaLR -59 496 1 1100 231 77 3 chr6 1733606 1733905 -187545649 - MER33 DNA MER1_type 0 324 4 241 171 0 0 chr6 1734334 1734375 -187545179 - MER5A DNA MER1_type -5 184 144 374 252 101 25 chr6 1734378 1734537 -187545017 - MER5A DNA MER1_type -18 171 1 195 277 77 0 chr6 1734542 1734607 -187544947 + MIR SINE MIR 23 92 -116 680 80 0 0 chr6 1734615 1734703 -187544851 + AluS SINE Alu 4 91 -221 1265 102 0 0 chr6 1734752 1734918 -187544636 - AluSg/x SINE Alu -18 294 129 451 314 6 13 chr6 1735083 1735239 -187544315 - MIR3 SINE MIR -12 196 42 255 192 20 91 chr6 1735391 1735490 -187544064 - L2 LINE L2 -12 3260 3169 236 252 158 31 chr6 1741396 1741523 -187538031 - MIR3 SINE MIR -63 145 3 1216 139 130 0 chr6 1744392 1744600 -187534954 + MER46A DNA MER2_type 1 235 -1 2025 115 3 73 chr6 1745519 1745849 -187533705 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 1746857 1746879 -187532675 + AT_rich Low_complexity Low_complexity 1 22 0 267 267 141 22 chr6 1747150 1747354 -187532200 + MIR SINE MIR 24 257 -5 226 261 159 11 chr6 1751159 1751247 -187528307 - MER91B DNA MER1_type 0 190 90 285 263 79 0 chr6 1751263 1751339 -187528215 - MER91B DNA MER1_type -61 129 48 1669 163 46 18 chr6 1752229 1752511 -187527043 + AluJo SINE Alu 1 290 -22 313 267 140 13 chr6 1756066 1756216 -187523338 + MIR SINE MIR 82 250 -12 250 337 51 10 chr6 1758573 1758671 -187520883 - MIR SINE MIR -13 249 148 1784 160 7 11 chr6 1758695 1758976 -187520578 + AluJb SINE Alu 1 280 -32 189 107 0 0 chr6 1758979 1759007 -187520547 + (GGAGA)n Simple_repeat Simple_repeat 2 29 0 1793 88 4 0 chr6 1760015 1760243 -187519311 + AluSg/x SINE Alu 81 309 -1 371 247 315 0 chr6 1761170 1761332 -187518222 - MLT1G LTR MaLR -24 566 354 22 0 0 0 chr6 1764604 1764626 -187514928 + AT_rich Low_complexity Low_complexity 1 22 0 967 253 110 67 chr6 1764683 1765304 -187514250 - MER21B LTR ERV1 -154 709 57 1978 151 6 13 chr6 1765349 1765661 -187513893 - AluJb SINE Alu -2 310 1 357 302 0 26 chr6 1766169 1766285 -187513269 - MIR SINE MIR -81 181 69 1958 183 103 19 chr6 1766646 1767056 -187512498 + MLT1D LTR MaLR 1 456 -49 1577 183 35 42 chr6 1767056 1767433 -187512121 - MLT1A2 LTR MaLR 0 374 1 1958 183 103 19 chr6 1767433 1767486 -187512068 + MLT1D LTR MaLR 456 503 -2 1661 269 121 55 chr6 1767646 1768849 -187510705 - HAL1 LINE L1 0 2507 1226 201 213 0 0 chr6 1768911 1768958 -187510596 + L2 LINE L2 2154 2200 -1114 1755 142 0 47 chr6 1770732 1771028 -187508526 + AluJb SINE Alu 6 287 -25 235 184 0 20 chr6 1771256 1771305 -187508249 + (TA)n Simple_repeat Simple_repeat 2 49 0 311 281 22 30 chr6 1772226 1772361 -187507193 + MER5A DNA MER1_type 51 184 -5 1869 161 7 0 chr6 1772829 1773121 -187506433 + MER1B DNA MER1_type 1 294 -45 611 261 22 17 chr6 1773391 1773571 -187505983 - MIR SINE MIR -38 224 44 423 0 0 0 chr6 1774061 1774108 -187505446 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr6 1775790 1775812 -187503742 + AT_rich Low_complexity Low_complexity 1 22 0 244 320 8 23 chr6 1776077 1776205 -187503349 + MIR SINE MIR 48 173 -89 1770 115 3 89 chr6 1776257 1776561 -187502993 - AluSx SINE Alu -9 303 26 225 0 0 0 chr6 1779397 1779422 -187500132 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 1781022 1781045 -187498509 + AT_rich Low_complexity Low_complexity 1 23 0 518 281 14 0 chr6 1781267 1781406 -187498148 + Charlie1 DNA MER1_type 1 141 -2620 983 174 134 13 chr6 1781409 1781708 -187497846 + Charlie1 DNA MER1_type 2427 2761 0 750 185 0 0 chr6 1781822 1781952 -187497602 + FLAM_A SINE Alu 2 131 -2 357 109 0 0 chr6 1782263 1782318 -187497236 + (CA)n Simple_repeat Simple_repeat 2 56 0 1731 168 4 0 chr6 1782874 1783142 -187496412 - AluJo SINE Alu -20 292 24 305 261 43 0 chr6 1783307 1783376 -187496178 + L2 LINE L2 3146 3217 -55 1080 238 45 26 chr6 1783431 1783851 -187495703 + L1M4 LINE L1 4852 5279 -867 26 0 0 0 chr6 1784489 1784515 -187495039 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 1784728 1784751 -187494803 + (TG)n Simple_repeat Simple_repeat 2 24 0 197 274 66 47 chr6 1785869 1785975 -187493579 - L2 LINE L2 -23 3290 3183 2108 120 38 0 chr6 1786114 1786406 -187493148 - AluSx SINE Alu -9 303 1 260 280 175 66 chr6 1787751 1788162 -187491392 - L2 LINE L2 -4 3309 2854 293 322 9 26 chr6 1788293 1788408 -187491146 + GA-rich Low_complexity Low_complexity 3 115 0 1520 172 32 36 chr6 1788764 1789072 -187490482 + AluJo SINE Alu 1 307 -5 21 57 0 0 chr6 1789074 1789109 -187490445 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 1790505 1790533 -187489021 + AT_rich Low_complexity Low_complexity 1 28 0 189 304 18 0 chr6 1792007 1792063 -187487491 - L2 LINE L2 -4 3309 3253 227 79 26 0 chr6 1792932 1792970 -187486584 + (CA)n Simple_repeat Simple_repeat 2 40 0 2451 89 0 0 chr6 1794149 1794451 -187485103 + AluSq SINE Alu 1 302 -11 311 192 14 0 chr6 1794512 1794585 -187484969 + (TA)n Simple_repeat Simple_repeat 1 74 0 194 347 56 0 chr6 1794640 1794712 -187484842 + MIR SINE MIR 47 122 -140 234 136 0 0 chr6 1794858 1794902 -187484652 + (CA)n Simple_repeat Simple_repeat 1 44 0 2240 107 3 3 chr6 1795301 1795600 -187483954 + AluSq SINE Alu 1 299 -14 198 0 0 0 chr6 1795600 1795622 -187483932 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 1795980 1796001 -187483553 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr6 1797427 1797462 -187482092 + (T)n Simple_repeat Simple_repeat 1 35 0 355 303 128 38 chr6 1800411 1800636 -187478918 + MIR SINE MIR 15 262 0 284 325 41 16 chr6 1800704 1800827 -187478727 + L2 LINE L2 3174 3299 -14 2853 173 52 12 chr6 1801282 1801550 -187478004 - MER7C DNA MER2_type -2426 602 346 1936 145 0 22 chr6 1801550 1801861 -187477693 + AluSx SINE Alu 1 304 -8 2853 173 52 12 chr6 1801861 1802170 -187477384 - MER7C DNA MER2_type -2682 346 2 1407 201 24 21 chr6 1802608 1802896 -187476658 + AluJo SINE Alu 1 289 -23 420 20 0 0 chr6 1802902 1802951 -187476603 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 231 0 15 chr6 1802958 1803023 -187476531 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 4454 196 61 16 chr6 1803474 1804629 -187474925 + L1M4c LINE L1 546 1752 -4632 2218 148 45 28 chr6 1804645 1805071 -187474483 - Tigger2a DNA MER2_type -1 433 1 212 353 8 0 chr6 1805071 1805204 -187474350 + (TA)n Simple_repeat Simple_repeat 1 134 0 1530 197 3 19 chr6 1805252 1805562 -187473992 - AluJb SINE Alu -7 305 1 968 181 10 0 chr6 1805861 1806054 -187473500 - MER3 DNA MER1_type -3 206 12 745 171 101 0 chr6 1806073 1806231 -187473323 - MER20 DNA MER1_type 0 219 46 22 0 0 0 chr6 1807816 1807838 -187471716 + AT_rich Low_complexity Low_complexity 1 22 0 452 131 0 0 chr6 1807905 1807966 -187471588 + AluJo SINE Alu 10 70 -242 227 69 0 0 chr6 1807968 1807997 -187471557 - Alu SINE Alu -28 105 77 1349 144 5 14 chr6 1808003 1808211 -187471343 + AluJo SINE Alu 72 277 -35 207 0 0 0 chr6 1808950 1808973 -187470581 + (T)n Simple_repeat Simple_repeat 1 23 0 200 268 0 0 chr6 1809333 1809374 -187470180 + polypyrimidine Low_complexity Low_complexity 5 45 0 22 56 0 0 chr6 1809847 1809883 -187469671 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 1810838 1810869 -187468685 + AT_rich Low_complexity Low_complexity 1 31 0 183 328 31 47 chr6 1810931 1811059 -187468495 - L2 LINE L2 -197 3116 2991 1902 88 74 14 chr6 1811662 1811990 -187467564 - AluY SINE Alu 0 311 1 233 200 50 17 chr6 1816144 1816204 -187463350 + L2 LINE L2 3249 3310 -3 320 332 119 20 chr6 1817844 1818046 -187461508 + L2 LINE L2 2827 3048 -224 384 238 109 32 chr6 1818363 1818551 -187461003 + MLT1L LTR MaLR 299 606 -9 1561 165 33 15 chr6 1818656 1818929 -187460625 + AluJb SINE Alu 1 278 -34 378 0 0 0 chr6 1818933 1818975 -187460579 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 1937 161 0 3 chr6 1819309 1819607 -187459947 + AluSx SINE Alu 1 297 -15 318 345 45 8 chr6 1819875 1820075 -187459479 - MIR SINE MIR -3 259 3 214 225 0 0 chr6 1821055 1821095 -187458459 - MIR SINE MIR -102 106 67 2187 126 21 12 chr6 1821412 1821746 -187457808 - MER1B DNA MER1_type 0 337 1 2100 149 0 9 chr6 1821901 1822216 -187457338 - AluJb SINE Alu 0 312 1 1644 161 30 0 chr6 1822905 1823172 -187456382 - AluJo SINE Alu -37 275 1 241 238 48 0 chr6 1823819 1823882 -187455672 - L2 LINE L2 -253 3060 2995 188 239 195 58 chr6 1824005 1824231 -187455323 + L2 LINE L2 2804 3060 -212 217 330 31 31 chr6 1824429 1824653 -187454901 - L2 LINE L2 -935 2379 2156 1045 169 13 58 chr6 1824705 1824930 -187454624 - MER20 DNA MER1_type -4 215 1 31 26 0 0 chr6 1827528 1827566 -187451988 + AT_rich Low_complexity Low_complexity 1 38 0 2022 101 24 0 chr6 1828535 1828822 -187450732 - AluSp SINE Alu -16 297 4 2751 16 0 0 chr6 1829060 1829364 -187450190 + AluY SINE Alu 1 304 -7 513 239 54 8 chr6 1830293 1830423 -187449131 + MER20 DNA MER1_type 2 137 -82 192 263 211 0 chr6 1835492 1835644 -187443910 + MIR3 SINE MIR 25 208 0 1211 231 35 19 chr6 1836083 1836455 -187443099 + L1ME1 LINE L1 5782 6159 -7 195 42 0 0 chr6 1837442 1837466 -187442088 + (A)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 1838098 1838139 -187441415 + AT_rich Low_complexity Low_complexity 1 41 0 198 103 0 0 chr6 1839304 1839333 -187440221 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr6 1839704 1839735 -187439819 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr6 1841445 1841477 -187438077 + GA-rich Low_complexity Low_complexity 3 34 0 2256 92 17 0 chr6 1843813 1844108 -187435446 - AluSg SINE Alu -10 300 1 21 57 0 0 chr6 1844683 1844718 -187434836 + AT_rich Low_complexity Low_complexity 1 35 0 189 275 63 106 chr6 1845044 1845186 -187434368 - L2 LINE L2 -1828 1486 1351 261 0 0 0 chr6 1846882 1846911 -187432643 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 1847216 1847238 -187432316 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr6 1851141 1851175 -187428379 + (CA)n Simple_repeat Simple_repeat 2 35 0 2018 123 36 0 chr6 1851567 1851869 -187427685 + AluSp SINE Alu 1 313 0 1338 88 0 0 chr6 1851924 1852094 -187427460 + AluSq SINE Alu 126 295 -18 188 263 88 44 chr6 1852388 1852502 -187427052 + MIR SINE MIR 90 208 -54 2008 155 7 7 chr6 1853181 1853491 -187426063 + AluJo SINE Alu 1 310 -2 2535 59 0 7 chr6 1853856 1854162 -187425392 + AluY SINE Alu 2 305 -6 256 333 65 54 chr6 1854745 1854913 -187424641 + L2 LINE L2 3101 3270 -2 25 65 0 0 chr6 1855005 1855051 -187424503 + AT_rich Low_complexity Low_complexity 1 46 0 1476 211 6 35 chr6 1855989 1856302 -187423252 + AluJo SINE Alu 1 304 -8 2071 115 35 0 chr6 1858944 1859231 -187420323 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr6 1859605 1859634 -187419920 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 1859813 1859841 -187419713 + AT_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr6 1862424 1862494 -187417060 + AT_rich Low_complexity Low_complexity 1 70 0 473 223 218 40 chr6 1862763 1862965 -187416589 - MIR SINE MIR -12 250 13 256 306 137 8 chr6 1863002 1863126 -187416428 - MIR SINE MIR -76 186 47 1085 199 15 0 chr6 1863551 1863752 -187415802 + MER2 DNA MER2_type 1 204 -141 1093 158 19 98 chr6 1863752 1864041 -187415513 - AluJo SINE Alu 0 312 54 1969 123 44 27 chr6 1864043 1864410 -187415144 - THE1C LTR MaLR -2 373 1 2442 113 5 15 chr6 1864410 1864799 -187414755 - THE1C-int LTR MaLR 0 1580 1196 284 203 2 48 chr6 1864799 1864872 -187414682 - AluJ/FLAM SINE Alu -244 58 1 21 36 0 0 chr6 1864874 1864902 -187414652 + AT_rich Low_complexity Low_complexity 1 28 0 3247 188 65 28 chr6 1865494 1866510 -187413044 - L1MB7 LINE L1 -78 6106 5044 234 176 0 0 chr6 1866728 1866779 -187412775 - L1MB7 LINE L1 -1118 5028 4978 263 232 14 14 chr6 1866782 1866851 -187412703 - L1MB7 LINE L1 -1250 4896 4828 864 203 16 5 chr6 1867468 1867655 -187411899 + MER5A DNA MER1_type 1 189 0 2083 141 7 0 chr6 1868190 1868481 -187411073 - AluSx SINE Alu -19 293 1 2305 86 26 0 chr6 1869005 1869309 -187410245 - AluSx SINE Alu 0 312 1 21 57 0 0 chr6 1870265 1870300 -187409254 + AT_rich Low_complexity Low_complexity 1 35 0 707 256 20 0 chr6 1871246 1871445 -187408109 - MER3 DNA MER1_type -1 208 6 211 337 71 10 chr6 1871752 1871850 -187407704 - L2 LINE L2 -32 3240 3137 654 207 165 0 chr6 1871954 1872142 -187407412 - MER20 DNA MER1_type 0 219 1 184 279 93 31 chr6 1872743 1872872 -187406682 - L2 LINE L2 -798 2516 2380 1367 150 26 51 chr6 1872948 1873261 -187406293 - MLT1B LTR MaLR -85 305 1 189 243 229 0 chr6 1873301 1873371 -187406183 + MIR SINE MIR 16 101 -161 944 179 16 0 chr6 1873445 1873635 -187405919 - L1MA4 LINE L1 -101 6199 6007 238 309 0 28 chr6 1873827 1874005 -187405549 + (CCCTA)n Simple_repeat Simple_repeat 2 174 0 236 300 100 0 chr6 1874147 1874217 -187405337 - MIR3 SINE MIR -14 194 118 366 349 50 15 chr6 1874616 1874814 -187404740 - L2 LINE L2 -4 3309 3105 230 241 0 17 chr6 1874911 1874969 -187404585 + CT-rich Low_complexity Low_complexity 1 57 0 308 241 13 0 chr6 1876355 1876434 -187403120 - L1ME3A LINE L1 -4 6166 6087 213 312 128 9 chr6 1876558 1876667 -187402887 + MIR3 SINE MIR 78 199 -9 246 306 97 45 chr6 1877562 1877696 -187401858 - L2 LINE L2 -1 3312 3172 209 280 50 30 chr6 1880864 1880964 -187398590 + MIR SINE MIR 20 121 -141 3038 184 38 6 chr6 1883655 1884188 -187395366 - MER44D DNA MER2_type 0 605 1 238 317 29 39 chr6 1884634 1884738 -187394816 + MIR3 SINE MIR 9 111 -97 871 174 76 76 chr6 1885779 1886054 -187393500 + MER33 DNA MER1_type 49 323 -1 218 329 14 0 chr6 1886368 1886441 -187393113 - MIR3 SINE MIR -54 154 81 2134 121 0 0 chr6 1887907 1888196 -187391358 + AluSx SINE Alu 1 289 -23 2825 16 0 0 chr6 1888923 1889233 -187390321 + AluYa5 SINE Alu 1 310 -1 267 54 0 0 chr6 1889944 1889981 -187389573 + (T)n Simple_repeat Simple_repeat 1 37 0 2249 99 0 34 chr6 1889998 1890320 -187389234 + AluY SINE Alu 1 311 0 192 257 176 0 chr6 1891731 1891805 -187387749 + L3 LINE CR1 1345 1431 -146 309 232 26 13 chr6 1892250 1892405 -187387149 + GA-rich Low_complexity Low_complexity 1 157 0 1737 183 6 10 chr6 1894288 1894600 -187384954 + AluJb SINE Alu 1 311 -1 313 264 104 48 chr6 1894914 1895039 -187384515 - L2 LINE L2 -8 3264 3133 2506 157 179 118 chr6 1898243 1898672 -187380882 + LTR28 LTR ERV1 1 403 -617 2247 118 53 34 chr6 1898672 1899029 -187380525 + THE1B LTR MaLR 1 364 0 2506 157 179 118 chr6 1899029 1899561 -187379993 + LTR28 LTR ERV1 403 1020 0 219 279 118 37 chr6 1899659 1899795 -187379759 + MIR3 SINE MIR 1 147 -61 186 258 106 15 chr6 1900444 1900510 -187379044 + L2 LINE L2 3237 3308 -5 507 93 40 0 chr6 1900716 1900791 -187378763 + AluY SINE Alu 216 293 -18 4504 127 49 39 chr6 1901528 1902305 -187377249 + LTR1 LTR ERV1 1 785 0 23 0 0 0 chr6 1903377 1903400 -187376154 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 0 0 chr6 1903908 1904207 -187375347 + AluSc SINE Alu 1 299 -10 2082 123 0 0 chr6 1904510 1904830 -187374724 + AluSx SINE Alu 1 320 0 251 313 71 0 chr6 1907672 1907771 -187371783 - L2 LINE L2 0 3313 3208 460 268 65 0 chr6 1908086 1908209 -187371345 - MIR SINE MIR -40 222 92 2537 57 0 3 chr6 1908358 1908658 -187370896 - AluY SINE Alu -9 302 4 4396 205 22 16 chr6 1908687 1910489 -187369065 - L1MB7 LINE L1 -10 6174 4362 266 286 13 13 chr6 1910990 1911067 -187368487 + MIR SINE MIR 62 138 -70 219 241 232 9 chr6 1911161 1911273 -187368281 + MIR SINE MIR 126 262 0 322 250 88 29 chr6 1911623 1911759 -187367795 + L1MEd LINE L1 2 145 -5974 1129 147 121 152 chr6 1912434 1912508 -187367046 + Tigger3(Golem) DNA MER2_type 5 80 -2948 2279 120 0 0 chr6 1912508 1912809 -187366745 + AluSx SINE Alu 1 301 -11 1129 147 121 152 chr6 1912809 1913089 -187366465 + Tigger3(Golem) DNA MER2_type 80 3028 0 1153 216 113 72 chr6 1913241 1913685 -187365869 - MLT1C LTR MaLR 0 467 6 815 120 45 53 chr6 1913714 1913847 -187365707 + FLAM_C SINE Alu 1 132 -1 582 263 108 31 chr6 1914238 1914751 -187364803 - L1MEd LINE L1 -4739 1392 958 390 205 0 0 chr6 1914753 1914836 -187364718 + C-rich Low_complexity Low_complexity 4 86 0 479 305 94 15 chr6 1914879 1915210 -187364344 - L1MEd LINE L1 -5194 925 569 339 278 0 21 chr6 1915309 1915406 -187364148 - L1MC4 LINE L1 -1334 6708 6614 270 81 0 0 chr6 1915406 1915443 -187364111 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr6 1915999 1916024 -187363530 + (CATG)n Simple_repeat Simple_repeat 2 26 0 807 214 107 5 chr6 1916649 1916845 -187362709 - MER20 DNA MER1_type 0 219 4 769 279 259 13 chr6 1917019 1917696 -187361858 - L2 LINE L2 -1020 2294 1452 345 279 39 90 chr6 1918450 1918683 -187360871 + MLT1K LTR MaLR 360 580 -8 349 330 35 9 chr6 1919206 1919321 -187360233 + L2 LINE L2 3181 3298 -15 2209 80 3 0 chr6 1920048 1920334 -187359220 + AluY SINE Alu 1 287 -24 1457 52 0 0 chr6 1920345 1920518 -187359036 + AluYa8 SINE Alu 133 305 -5 632 236 0 8 chr6 1921452 1921579 -187357975 + FLAM_A SINE Alu 1 126 -7 462 289 168 10 chr6 1922120 1922317 -187357237 + MIR SINE MIR 25 252 -10 542 289 54 0 chr6 1923857 1924023 -187355531 - MIR SINE MIR -45 217 43 870 151 11 81 chr6 1924313 1924499 -187355055 + AluJo SINE Alu 120 292 -20 294 260 60 30 chr6 1925069 1925169 -187354385 - MIR SINE MIR -91 171 69 798 202 19 84 chr6 1926706 1926919 -187352635 - MER20 DNA MER1_type -19 200 2 846 152 15 8 chr6 1927386 1927518 -187352036 - AluJb SINE Alu -178 134 2 249 278 55 35 chr6 1927875 1928005 -187351549 + MIR SINE MIR 54 187 -21 22 0 0 0 chr6 1929638 1929660 -187349894 + AT_rich Low_complexity Low_complexity 1 22 0 3428 155 37 12 chr6 1930014 1930606 -187348948 - Tigger1 DNA MER2_type -128 2290 1684 2177 161 45 15 chr6 1930602 1930999 -187348555 - Tigger1 DNA MER2_type -1980 438 30 * 405 178 89 141 chr6 1931014 1931149 -187348405 - MER7A DNA MER2_type -220 126 1 180 111 0 0 chr6 1931591 1931618 -187347936 + (A)n Simple_repeat Simple_repeat 1 27 0 753 236 144 5 chr6 1932019 1932214 -187347340 - MER58A DNA MER1_type -2 222 1 2149 95 35 3 chr6 1932641 1932926 -187346628 - AluSx SINE Alu -18 294 1 380 271 119 0 chr6 1933070 1933188 -187346366 - L2 LINE L2 0 3272 3141 1694 184 0 14 chr6 1933635 1933929 -187345625 - AluJo SINE Alu -22 290 1 23 33 0 0 chr6 1933929 1933959 -187345595 + AT_rich Low_complexity Low_complexity 1 30 0 1142 183 69 19 chr6 1934912 1935174 -187344380 + L1MA5A LINE L1 6002 6276 -21 195 299 10 72 chr6 1937098 1937195 -187342359 - MER5A DNA MER1_type -63 126 36 * 239 231 44 66 chr6 1937123 1937214 -187342340 + MER5A DNA MER1_type 96 184 -5 1990 169 58 64 chr6 1937882 1938688 -187340866 - L1MB7 LINE L1 -1 6183 5373 2411 110 0 0 chr6 1938688 1938998 -187340556 - AluSg SINE Alu 0 310 1 1091 147 24 18 chr6 1939005 1939175 -187340379 - FAM SINE Alu -4 171 1 1990 169 58 64 chr6 1939175 1939490 -187340064 - L1MB7 LINE L1 -817 5367 4868 182 266 78 16 chr6 1939743 1939807 -187339747 - MIR SINE MIR -83 125 58 208 233 67 100 chr6 1940180 1940270 -187339284 - MIR SINE MIR -3 259 173 4819 36 21 5 chr6 1940511 1941070 -187338484 - L1PA4 LINE L1 -6 6149 5582 1551 180 7 34 chr6 1941364 1941658 -187337896 + AluJo SINE Alu 1 286 -26 840 246 24 28 chr6 1941765 1941976 -187337578 + MER58A DNA MER1_type 13 222 -2 221 360 56 0 chr6 1942681 1942770 -187336784 + L2 LINE L2 2543 2636 -678 367 260 309 18 chr6 1942789 1943178 -187336376 + L2 LINE L2 2811 3312 -1 247 273 45 0 chr6 1944653 1944719 -187334835 + L2 LINE L2 3142 3210 -62 2600 64 0 3 chr6 1944803 1945114 -187334440 + AluY SINE Alu 1 310 -1 26 0 0 0 chr6 1945143 1945169 -187334385 + AT_rich Low_complexity Low_complexity 1 26 0 400 257 64 9 chr6 1945679 1945788 -187333766 + L2 LINE L2 3197 3311 -2 1339 123 30 5 chr6 1946589 1946792 -187332762 + L1PA10 LINE L1 5954 6161 -7 41 66 0 0 chr6 1947990 1948066 -187331488 + AT_rich Low_complexity Low_complexity 1 76 0 24 53 0 0 chr6 1948086 1948124 -187331430 + AT_rich Low_complexity Low_complexity 1 38 0 927 279 18 21 chr6 1948374 1948654 -187330900 + Charlie4 DNA MER1_type 18 296 -1665 683 225 58 17 chr6 1948653 1948826 -187330728 + Charlie4 DNA MER1_type 1782 1961 0 * 22 0 0 0 chr6 1949470 1949492 -187330062 + AT_rich Low_complexity Low_complexity 1 22 0 2303 97 0 23 chr6 1950572 1950881 -187328673 + AluSx SINE Alu 1 302 -10 451 174 87 0 chr6 1952177 1952269 -187327285 + L2 LINE L2 3173 3272 0 22702 185 35 19 chr6 1953304 1957847 -187321707 + L1PB4 LINE L1 18 5488 -2124 1754 105 0 4 chr6 1957847 1958076 -187321478 + AluSq SINE Alu 1 228 -85 22702 185 35 19 chr6 1958076 1959652 -187319902 + L1PB4 LINE L1 5488 7037 -575 682 242 47 38 chr6 1959782 1959993 -187319561 + AluJo SINE Alu 81 293 -19 1637 220 24 3 chr6 1959998 1960330 -187319224 + L1PB4 LINE L1 7250 7588 -6 226 296 148 28 chr6 1960763 1960905 -187318649 + L1MCa LINE L1 232 390 -6036 350 243 72 27 chr6 1961063 1961174 -187318380 + L2 LINE L2 3197 3312 -1 915 181 40 6 chr6 1961979 1962156 -187317398 + L1PA11 LINE L1 5956 6138 -36 464 307 63 70 chr6 1962395 1962868 -187316686 + L2 LINE L2 2844 3313 0 25 31 0 0 chr6 1963459 1963491 -187316063 + AT_rich Low_complexity Low_complexity 1 32 0 303 260 78 89 chr6 1964126 1964320 -187315234 - L1MEc LINE L1 -822 2079 1844 253 336 45 9 chr6 1965276 1965386 -187314168 + L2 LINE L2 3150 3263 -9 292 350 60 0 chr6 1966355 1966455 -187313099 - L2 LINE L2 -9 3263 3158 2591 121 6 6 chr6 1967527 1967891 -187311663 + L1PA11 LINE L1 5803 6166 -8 195 351 69 8 chr6 1968109 1968240 -187311314 + L2 LINE L2 2617 2755 -559 2457 71 0 3 chr6 1969268 1969565 -187309989 - AluY SINE Alu -13 298 3 1055 192 75 43 chr6 1969568 1969849 -187309705 - L1MB8 LINE L1 -72 6106 5817 997 175 0 29 chr6 1969887 1970058 -187309496 - FRAM SINE Alu -10 166 1 2684 182 34 12 chr6 1970058 1970721 -187308833 - L1MB8 LINE L1 -351 5827 5152 1443 227 60 5 chr6 1970759 1971143 -187308411 + L1M4 LINE L1 4611 5015 -1131 413 262 73 60 chr6 1971146 1971394 -187308160 - HAL1b LINE L1 -616 732 482 377 286 259 5 chr6 1971432 1971617 -187307937 - L2 LINE L2 0 3313 3082 376 215 74 74 chr6 1971626 1971789 -187307765 + HAL1b LINE L1 905 1067 -281 355 269 44 55 chr6 1972779 1972961 -187306593 + MLT1J LTR MaLR 253 432 -79 223 240 56 112 chr6 1973163 1973342 -187306212 + L2 LINE L2 2894 3062 -210 2172 130 0 0 chr6 1973578 1973895 -187305659 - AluSx SINE Alu 0 317 1 282 227 175 10 chr6 1974665 1974762 -187304792 + MER103 DNA DNA 37 149 -17 230 253 84 0 chr6 1975437 1975520 -187304034 - MLT1I LTR MaLR -315 94 5 219 69 0 0 chr6 1975802 1975831 -187303723 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 716 247 97 23 chr6 1978204 1978463 -187301091 - L2 LINE L2 -1 3312 3035 678 262 29 44 chr6 1978533 1978739 -187300815 - MIR SINE MIR -13 249 47 22 70 0 0 chr6 1979470 1979513 -187300041 + AT_rich Low_complexity Low_complexity 1 43 0 382 161 39 23 chr6 1981243 1981373 -187298181 + CT-rich Low_complexity Low_complexity 3 134 0 1225 304 83 15 chr6 1981619 1982090 -187297464 - MLT1J LTR MaLR -8 503 1 2311 93 0 3 chr6 1982417 1982717 -187296837 + AluSc SINE Alu 1 299 -10 254 182 55 0 chr6 1983574 1983629 -187295925 + GA-rich Low_complexity Low_complexity 4 61 0 318 313 57 62 chr6 1983629 1983717 -187295837 + HAL1b LINE L1 430 517 -831 1292 219 75 0 chr6 1983717 1984037 -187295517 - MER2 DNA MER2_type 0 344 1 318 313 57 62 chr6 1984037 1984175 -187295379 + HAL1b LINE L1 517 655 -693 2337 87 3 0 chr6 1984231 1984530 -187295024 + AluSg SINE Alu 1 300 -10 311 261 27 27 chr6 1984943 1985054 -187294500 - HAL1b LINE L1 -517 831 721 463 36 99 0 chr6 1985085 1985196 -187294358 + (TA)n Simple_repeat Simple_repeat 2 123 0 6246 148 65 25 chr6 1985688 1986871 -187292683 - Tigger3b DNA MER2_type 0 1231 1 420 247 9 57 chr6 1987394 1987579 -187291975 + MER34 LTR ERV1 1 201 -341 * 774 215 45 33 chr6 1987578 1987820 -187291734 + MER39 LTR ERV1 463 707 0 201 313 0 0 chr6 1987894 1987961 -187291593 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 520 202 47 0 chr6 1990303 1990432 -187289122 + Charlie5 DNA MER1_type 2450 2584 -28 5633 110 16 14 chr6 1990475 1991476 -187288078 + L1PA13 LINE L1 5160 6160 -3 25 0 0 0 chr6 1991865 1991890 -187287664 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 1992059 1992096 -187287458 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 1992520 1992549 -187287005 + AT_rich Low_complexity Low_complexity 1 29 0 1804 159 7 13 chr6 1992679 1992980 -187286574 + AluJo SINE Alu 1 299 -13 1416 223 84 12 chr6 1993209 1993783 -187285771 + L1M4 LINE L1 2613 3227 -2919 2132 133 0 0 chr6 1993948 1994256 -187285298 - AluSx SINE Alu -4 308 1 1111 183 68 8 chr6 1994258 1994493 -187285061 - Tigger2 DNA MER2_type 0 2718 2470 29 28 0 0 chr6 1994619 1994655 -187284899 + AT_rich Low_complexity Low_complexity 1 36 0 3790 193 33 18 chr6 1994965 1995757 -187283797 - L1MB8 LINE L1 -6 6172 5369 2304 231 26 44 chr6 1995737 1996134 -187283420 - L1MB8 LINE L1 -1780 4366 3986 * 1906 111 50 0 chr6 1996134 1996396 -187283158 - AluSx SINE Alu -37 275 1 2304 231 26 44 chr6 1996396 1996720 -187282834 - L1MB8 LINE L1 -2160 3986 3658 187 51 0 51 chr6 1996952 1996991 -187282563 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr6 1998212 1998240 -187281314 + AT_rich Low_complexity Low_complexity 1 28 0 292 311 50 42 chr6 2000399 2000637 -187278917 + L1MEc LINE L1 1093 1332 -4873 314 275 79 44 chr6 2000761 2000970 -187278584 + L1MEc LINE L1 1546 1761 -815 450 0 0 0 chr6 2002006 2002056 -187277498 + (TG)n Simple_repeat Simple_repeat 2 51 0 211 200 0 0 chr6 2002134 2002169 -187277385 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 2003564 2003588 -187275966 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr6 2004782 2004809 -187274745 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr6 2005638 2005665 -187273889 + AT_rich Low_complexity Low_complexity 1 27 0 263 243 171 0 chr6 2006807 2006877 -187272677 - Charlie8 DNA MER1_type -992 1425 1344 332 193 263 18 chr6 2006881 2006995 -187272559 - MER5A DNA MER1_type 0 189 48 832 264 63 70 chr6 2007106 2007579 -187271975 - L2 LINE L2 0 3313 2844 398 277 43 28 chr6 2008339 2008480 -187271074 - L2 LINE L2 0 3313 3171 422 320 19 13 chr6 2009522 2009678 -187269876 - MER5A DNA MER1_type -1 188 32 228 252 56 9 chr6 2009785 2009892 -187269662 + Charlie7 DNA MER1_type 2435 2546 -66 479 239 62 0 chr6 2009959 2010089 -187269465 - MER58C DNA MER1_type 0 215 78 600 146 21 0 chr6 2010099 2010195 -187269359 + L1MB7 LINE L1 5894 5991 -193 296 314 176 29 chr6 2011828 2012140 -187267414 + L2 LINE L2 1963 2320 -994 1464 202 7 20 chr6 2012184 2012486 -187267068 + AluJo SINE Alu 1 298 -14 206 245 0 0 chr6 2013570 2013623 -187265931 + T-rich Low_complexity Low_complexity 1 53 0 283 128 0 0 chr6 2013626 2013673 -187265881 - L1PA16 LINE L1 0 6166 6120 255 314 67 0 chr6 2015029 2015134 -187264420 - MIR SINE MIR -30 232 121 186 351 13 26 chr6 2015333 2015410 -187264144 + MER5A DNA MER1_type 45 120 -69 1331 265 122 40 chr6 2015904 2016087 -187263467 + L1MDa LINE L1 1475 1641 -5080 2347 103 0 0 chr6 2016087 2016397 -187263157 + AluSg SINE Alu 1 310 0 1331 265 122 40 chr6 2016397 2017152 -187262402 + L1MDa LINE L1 1641 2536 -4185 * 4855 141 26 22 chr6 2017136 2017672 -187261882 + L1PB4 LINE L1 5291 5833 -323 1318 206 29 32 chr6 2017672 2017983 -187261571 + AluJo SINE Alu 1 310 -2 4855 141 26 22 chr6 2017983 2018307 -187261247 + L1PB4 LINE L1 5833 6154 -2 409 257 104 15 chr6 2018322 2018524 -187261030 + L1MDa LINE L1 2509 2728 -3812 * 3240 238 151 69 chr6 2018519 2019966 -187259588 + L1MCa LINE L1 26 1352 -5074 318 50 0 0 chr6 2019966 2020006 -187259548 + (TA)n Simple_repeat Simple_repeat 2 41 0 3240 238 151 69 chr6 2020006 2021677 -187257877 + L1MCa LINE L1 1352 3409 -3017 1378 180 117 25 chr6 2021678 2021995 -187257559 - MER44D DNA MER2_type -1 604 387 1607 161 16 82 chr6 2021995 2022312 -187257242 + AluJb SINE Alu 1 296 -16 392 303 0 0 chr6 2022370 2022515 -187257039 + L1MDa LINE L1 2757 2901 -3639 1458 184 4 11 chr6 2022616 2022887 -187256667 - AluJb SINE Alu -23 289 21 2163 115 0 7 chr6 2023630 2023935 -187255619 - AluSq SINE Alu -10 303 1 23 68 0 0 chr6 2023955 2023999 -187255555 + AT_rich Low_complexity Low_complexity 1 44 0 787 252 96 32 chr6 2024521 2025021 -187254533 - L1M4 LINE L1 -1331 4815 4284 1159 175 154 34 chr6 2025025 2025350 -187254204 + MLT1A2 LTR MaLR 7 370 -4 289 265 82 20 chr6 2025355 2025551 -187254003 - L1M4 LINE L1 -1862 4284 4077 1144 195 8 51 chr6 2025615 2025872 -187253682 + MLT1D LTR MaLR 2 247 -258 8396 69 3 2 chr6 2025873 2027018 -187252536 + L1P LINE L1 2837 3982 -2164 1837 79 12 8 chr6 2027018 2027269 -187252285 + L1PA6 LINE L1 5902 6154 0 876 190 109 19 chr6 2027280 2027491 -187252063 + MLT1D LTR MaLR 269 498 -7 745 287 54 9 chr6 2027529 2027846 -187251708 - L1M4 LINE L1 -2229 3917 3587 552 229 70 78 chr6 2027922 2027983 -187251571 - L1M4 LINE L1 -3525 2621 2561 2466 81 0 0 chr6 2027983 2028290 -187251264 + AluSg SINE Alu 1 307 -3 552 229 70 78 chr6 2028290 2028512 -187251042 - L1M4 LINE L1 -3585 2561 2340 186 408 26 26 chr6 2028513 2028665 -187250889 - L2 LINE L2 -225 3047 2896 238 303 56 42 chr6 2028722 2028864 -187250690 + MLT1L LTR MaLR 44 187 -428 342 330 135 14 chr6 2028932 2029147 -187250407 + MLT1L LTR MaLR 353 593 -22 1196 215 111 82 chr6 2030423 2030944 -187248610 + L1ME LINE L1 929 1464 -5483 181 0 33 33 chr6 2030945 2030975 -187248579 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 811 230 86 63 chr6 2030979 2031571 -187247983 + L1ME LINE L1 1413 2141 -4816 195 247 193 30 chr6 2031884 2032053 -187247501 + MIR SINE MIR 2 246 -16 369 263 10 0 chr6 2032164 2032263 -187247291 - MER104 DNA Tc2 -12 168 69 641 263 43 16 chr6 2032331 2032517 -187247037 - MIR SINE MIR -59 203 13 432 343 6 23 chr6 2032709 2032884 -187246670 + MER5B DNA MER1_type 4 175 -3 25 0 0 0 chr6 2033042 2033067 -187246487 + AT_rich Low_complexity Low_complexity 1 25 0 245 309 119 40 chr6 2033372 2033498 -187246056 + L2 LINE L2 3136 3271 -1 691 260 73 0 chr6 2033914 2034106 -187245448 + MER3 DNA MER1_type 4 209 0 1871 126 72 0 chr6 2034223 2034501 -187245053 + AluSx SINE Alu 1 298 -14 264 337 0 20 chr6 2034634 2034735 -187244819 + L3 LINE CR1 1362 1460 -117 2138 125 13 0 chr6 2035047 2035352 -187244202 + AluSx SINE Alu 4 312 0 2783 10 0 0 chr6 2035573 2035874 -187243680 + AluY SINE Alu 1 301 -10 569 295 105 45 chr6 2036593 2036894 -187242660 - L2 LINE L2 -1 3312 2970 2121 93 45 0 chr6 2036894 2037183 -187242371 + AluSc SINE Alu 1 302 -7 569 295 105 45 chr6 2037183 2037373 -187242181 - L2 LINE L2 -343 2970 2793 2100 139 0 7 chr6 2037581 2037890 -187241664 + AluSx SINE Alu 1 307 -5 329 301 107 11 chr6 2038924 2039099 -187240455 + MIR SINE MIR 21 214 -48 293 354 0 0 chr6 2039225 2039324 -187240230 + L2 LINE L2 3210 3308 -5 365 296 176 0 chr6 2040959 2041101 -187238453 - MIR SINE MIR -12 250 84 37606 34 25 2 chr6 2041114 2046578 -187232976 + L1PA3 LINE L1 564 6155 0 245 167 0 17 chr6 2046579 2046639 -187232915 - Charlie4 DNA MER1_type -133 1828 1770 245 259 45 80 chr6 2047964 2048076 -187231478 + MIR SINE MIR 41 148 -114 274 211 28 0 chr6 2048205 2048276 -187231278 + (TG)n Simple_repeat Simple_repeat 1 73 0 5943 151 27 78 chr6 2049515 2050815 -187228739 - L1MA4A LINE L1 -7 6296 5007 748 207 7 0 chr6 2050815 2050950 -187228604 - AluJo SINE Alu -176 136 1 5943 151 27 78 chr6 2050950 2051402 -187228152 - L1MA4A LINE L1 -1296 5007 4533 10349 202 41 25 chr6 2051422 2056935 -187222619 - L1PA4 LINE L1 -4 6853 1270 270 200 12 62 chr6 2057031 2057111 -187222443 + MER116 DNA Mariner 1 76 -4 220 209 0 0 chr6 2058310 2058353 -187221201 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 234 124 16 chr6 2058770 2058962 -187220592 - MER112 DNA MER1_type 0 260 21 24 32 0 0 chr6 2060084 2060115 -187219439 + AT_rich Low_complexity Low_complexity 1 31 0 2549 50 0 3 chr6 2060653 2060953 -187218601 - AluY SINE Alu -12 299 1 1918 143 11 0 chr6 2061686 2061973 -187217581 - AluJo SINE Alu -22 290 1 219 241 103 46 chr6 2062032 2062119 -187217435 + MIR SINE MIR 57 148 -114 238 253 0 81 chr6 2064483 2064570 -187214984 + MIR SINE MIR 128 207 -55 234 294 43 33 chr6 2065122 2065214 -187214340 - L2 LINE L2 0 3313 3221 263 242 10 30 chr6 2065626 2065725 -187213829 + GA-rich Low_complexity Low_complexity 1 97 0 372 366 72 19 chr6 2065726 2065988 -187213566 - L1MEd LINE L1 -5382 737 462 467 353 30 15 chr6 2067585 2067786 -187211768 + L3 LINE CR1 946 1149 -428 1136 173 133 41 chr6 2067790 2068061 -187211493 + AluJb SINE Alu 6 301 -11 716 327 110 36 chr6 2070140 2070639 -187208915 + L3 LINE CR1 457 992 -585 441 330 121 35 chr6 2070678 2071051 -187208503 + L3 LINE CR1 1167 1571 -6 722 255 210 13 chr6 2071243 2071557 -187207997 + HsTC2 DNA Tc2 24 399 -1499 * 783 227 48 13 chr6 2071554 2071783 -187207771 + HsTC2 DNA Tc2 1664 1900 0 273 348 11 11 chr6 2071855 2071947 -187207607 - L3 LINE CR1 -4 1573 1482 304 255 131 48 chr6 2072151 2072296 -187207258 + L1M LINE L1 5257 5413 -2395 23 24 0 24 chr6 2074197 2074215 -187205339 + AT_rich Low_complexity Low_complexity 1 18 -22 2034 100 14 14 chr6 2074215 2074504 -187205050 - AluSx SINE Alu -23 289 1 23 24 0 24 chr6 2074504 2074526 -187205028 + AT_rich Low_complexity Low_complexity 18 40 0 324 206 0 184 chr6 2076108 2076244 -187203310 - MIR3 SINE MIR -9 199 89 189 154 0 0 chr6 2077453 2077492 -187202062 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 2079923 2079944 -187199610 + AT_rich Low_complexity Low_complexity 1 21 0 2543 62 0 0 chr6 2081049 2081355 -187198199 + AluY SINE Alu 3 308 -3 2302 111 0 0 chr6 2082727 2083033 -187196521 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 2084512 2084542 -187195012 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 2084609 2084634 -187194920 + AT_rich Low_complexity Low_complexity 1 25 0 355 314 109 6 chr6 2085447 2085603 -187193951 - L2 LINE L2 -229 3084 2913 244 342 9 45 chr6 2085640 2085751 -187193803 - MIR SINE MIR -129 133 27 496 268 31 0 chr6 2088578 2088705 -187190849 + MER5A DNA MER1_type 1 131 -58 202 255 0 0 chr6 2089943 2089990 -187189564 + L2 LINE L2 3267 3313 0 246 32 0 0 chr6 2091095 2091126 -187188428 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 287 302 43 43 chr6 2092879 2093018 -187186536 + MIR3 SINE MIR 1 139 -69 25 0 0 0 chr6 2093211 2093236 -187186318 + AT_rich Low_complexity Low_complexity 1 25 0 426 268 167 26 chr6 2096259 2096456 -187183098 - MIR SINE MIR -3 259 32 682 256 21 10 chr6 2097117 2097326 -187182228 - MIR SINE MIR -41 221 12 327 274 260 7 chr6 2098371 2098517 -187181037 + MER5A DNA MER1_type 3 185 -4 238 290 81 16 chr6 2101144 2101206 -187178348 + MIR SINE MIR 23 88 -174 611 229 0 0 chr6 2101302 2101411 -187178143 + FLAM_C SINE Alu 1 109 -34 261 0 0 0 chr6 2101422 2101451 -187178103 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 730 161 8 0 chr6 2101456 2101574 -187177980 - FLAM_C SINE Alu -24 119 1 992 194 0 0 chr6 2101586 2101761 -187177793 + AluJb SINE Alu 129 303 -9 22 0 0 0 chr6 2102165 2102187 -187177367 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 10 0 chr6 2102776 2103076 -187176478 - AluSx SINE Alu -7 305 3 2154 119 3 3 chr6 2104317 2104611 -187174943 - AluSq SINE Alu -9 304 11 306 275 38 0 chr6 2104666 2104746 -187174808 - MIR SINE MIR -134 128 46 453 231 25 100 chr6 2106055 2106215 -187173339 - MIR3 SINE MIR -31 177 30 421 200 0 0 chr6 2107594 2107669 -187171885 + Tigger5 DNA MER2_type 5 79 -2244 287 194 83 28 chr6 2107671 2107743 -187171811 - Tigger5 DNA MER2_type -6 2317 2242 * 339 217 0 0 chr6 2107739 2107808 -187171746 + Tigger5 DNA MER2_type 2255 2323 0 624 249 82 27 chr6 2108116 2108325 -187171229 - MIR SINE MIR -4 258 42 454 283 108 28 chr6 2111022 2111234 -187168320 - MIR SINE MIR 0 262 34 26 30 0 0 chr6 2111311 2111344 -187168210 + AT_rich Low_complexity Low_complexity 1 33 0 297 0 0 0 chr6 2111742 2111775 -187167779 + (CAT)n Simple_repeat Simple_repeat 1 33 0 1944 152 61 7 chr6 2111832 2112034 -187167520 - Charlie5 DNA MER1_type 0 2624 2434 1460 164 126 7 chr6 2112034 2112344 -187167210 - MER7A DNA MER2_type 0 346 2 1944 152 61 7 chr6 2112344 2112581 -187166973 - Charlie5 DNA MER1_type -190 2434 2161 1310 169 60 70 chr6 2112581 2112883 -187166671 + AluJo SINE Alu 1 299 -13 1058 208 0 0 chr6 2112896 2113079 -187166475 + FRAM SINE Alu 1 176 0 3190 200 79 39 chr6 2113079 2113480 -187166074 - Charlie5 DNA MER1_type -454 2170 1787 2402 73 7 3 chr6 2113480 2113780 -187165774 - AluSp SINE Alu -12 301 1 3190 200 79 39 chr6 2113780 2114649 -187164905 - Charlie5 DNA MER1_type -837 1787 823 719 139 9 0 chr6 2114649 2114764 -187164790 + MSTB LTR MaLR 1 116 -310 559 174 74 0 chr6 2114752 2114873 -187164681 + MSTB LTR MaLR 299 428 -4 * 1160 217 170 28 chr6 2114877 2115210 -187164344 - Charlie5 DNA MER1_type -1797 827 543 904 158 0 0 chr6 2115210 2115356 -187164198 + L1PB3 LINE L1 6008 6153 -1 1160 217 170 28 chr6 2115356 2115665 -187163889 - Charlie5 DNA MER1_type -2081 543 15 735 275 54 0 chr6 2115674 2115896 -187163658 - MIR SINE MIR -27 235 2 1092 223 157 55 chr6 2116180 2116638 -187162916 + MLT1D LTR MaLR 1 505 0 254 29 29 0 chr6 2118012 2118047 -187161507 + (TC)n Simple_repeat Simple_repeat 2 37 0 2501 155 23 32 chr6 2118394 2118865 -187160689 + MLT1C LTR MaLR 1 467 0 217 271 51 0 chr6 2119186 2119245 -187160309 + L2 LINE L2 3138 3199 -73 198 0 0 0 chr6 2120048 2120070 -187159484 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 315 283 126 25 chr6 2120212 2120371 -187159183 - MIR SINE MIR -37 225 51 1298 217 68 25 chr6 2120466 2120909 -187158645 - MER74B LTR ERVL -103 519 58 2135 108 0 11 chr6 2121399 2121716 -187157838 + AluSx SINE Alu 1 314 0 478 154 235 0 chr6 2121752 2121914 -187157640 - MER2 DNA MER2_type -26 319 120 498 180 30 0 chr6 2121914 2122014 -187157540 + FLAM_A SINE Alu 22 124 -18 542 184 149 0 chr6 2122014 2122128 -187157426 - MER2 DNA MER2_type -213 132 2 613 302 16 21 chr6 2122143 2122385 -187157169 + L1ME LINE L1 5336 5576 -586 213 310 0 0 chr6 2122665 2122723 -187156831 + MIR3 SINE MIR 149 206 -2 2202 115 3 0 chr6 2124554 2124866 -187154688 - AluSq SINE Alu 0 313 1 216 315 76 11 chr6 2125138 2125230 -187154324 - MIR3 SINE MIR -8 200 103 634 196 38 23 chr6 2126414 2126547 -187153007 + AluJo SINE Alu 1 135 -177 407 283 25 57 chr6 2126631 2126790 -187152764 + MIR3 SINE MIR 34 187 -21 21 57 0 19 chr6 2127195 2127212 -187152342 + AT_rich Low_complexity Low_complexity 1 17 -35 1534 91 55 0 chr6 2127212 2127466 -187152088 + L1MA2 LINE L1 6037 6304 0 21 57 0 19 chr6 2127466 2127501 -187152053 + AT_rich Low_complexity Low_complexity 17 52 0 192 283 0 19 chr6 2127610 2127663 -187151891 + MIR SINE MIR 69 120 -142 327 293 87 62 chr6 2128526 2128847 -187150707 + L1ME LINE L1 4259 4587 -1559 893 131 138 0 chr6 2129075 2129235 -187150319 + AluSq SINE Alu 132 313 0 567 299 83 56 chr6 2129251 2129877 -187149677 + L1ME LINE L1 4894 5547 -751 245 228 25 13 chr6 2129894 2129973 -187149581 + L1ME LINE L1 5612 5691 -430 22 35 0 0 chr6 2130300 2130329 -187149225 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr6 2131010 2131041 -187148513 + (A)n Simple_repeat Simple_repeat 1 31 0 323 265 212 13 chr6 2133292 2133443 -187146111 - MER5A DNA MER1_type 0 189 9 513 180 18 81 chr6 2135342 2135453 -187144101 - Tigger2 DNA MER2_type -1 2717 2614 538 156 0 0 chr6 2135453 2135530 -187144024 - AluJ/FLAM SINE Alu -234 78 2 1392 81 113 57 chr6 2135531 2135653 -187143901 - Tigger2 DNA MER2_type -2456 262 148 2322 113 7 0 chr6 2135653 2135963 -187143591 - AluSx SINE Alu 0 312 1 1392 81 113 57 chr6 2135963 2136088 -187143466 - Tigger2 DNA MER2_type -2570 148 1 221 293 47 28 chr6 2136451 2136557 -187142997 - MIR SINE MIR -33 229 122 1419 151 98 19 chr6 2136711 2136976 -187142578 - AluJb SINE Alu -26 286 1 2240 97 7 0 chr6 2137165 2137455 -187142099 - AluY SINE Alu -19 292 1 191 265 191 0 chr6 2138347 2138415 -187141139 + MIR3 SINE MIR 15 95 -113 459 0 0 0 chr6 2138806 2138857 -187140697 + (CA)n Simple_repeat Simple_repeat 2 52 0 911 233 150 53 chr6 2139513 2139554 -187140000 - MLT2B1 LTR ERVL 0 520 484 216 67 0 0 chr6 2139554 2139584 -187139970 + (TG)n Simple_repeat Simple_repeat 1 30 0 911 233 150 53 chr6 2139584 2139881 -187139673 - MLT2B1 LTR ERVL -36 484 149 4208 201 55 7 chr6 2139910 2141335 -187138219 - ERVL-B1 LTR ERVL -4219 1545 2 1316 215 195 31 chr6 2141336 2141783 -187137771 - MLT2B1 LTR ERVL 0 520 1 231 254 37 74 chr6 2142018 2142207 -187137347 + L1MEd LINE L1 923 1104 -5015 228 230 144 58 chr6 2142520 2142659 -187136895 - MIR SINE MIR -26 236 86 234 293 29 71 chr6 2142702 2142842 -187136712 - MIR SINE MIR -69 193 60 191 304 54 22 chr6 2142878 2142970 -187136584 + MIR3 SINE MIR 95 189 -19 266 313 0 10 chr6 2143248 2143344 -187136210 + L2 LINE L2 1890 1984 -1330 203 346 0 39 chr6 2144014 2144092 -187135462 + L2 LINE L2 3238 3312 -1 1931 115 0 48 chr6 2145481 2145793 -187133761 + AluSx SINE Alu 11 307 -5 2380 96 3 0 chr6 2146068 2146380 -187133174 + AluSp SINE Alu 1 313 0 1884 180 0 3 chr6 2146490 2146795 -187132759 + AluJo SINE Alu 1 304 -8 2474 71 0 0 chr6 2146860 2147157 -187132397 + AluY SINE Alu 1 297 -14 480 186 72 0 chr6 2147470 2147567 -187131987 - MLT1A2 LTR MaLR -2 372 269 2313 79 0 7 chr6 2148557 2148849 -187130705 + AluSg1 SINE Alu 1 290 -19 345 264 138 75 chr6 2149040 2149388 -187130166 + L1MEd LINE L1 2659 3028 -3101 221 283 120 0 chr6 2150058 2150150 -187129404 - MIR SINE MIR -110 152 50 327 250 0 14 chr6 2150258 2150330 -187129224 - L2 LINE L2 -2 3311 3241 266 0 29 0 chr6 2150691 2150725 -187128829 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2065 126 0 3 chr6 2150730 2151015 -187128539 - AluSx SINE Alu -28 284 1 269 183 95 103 chr6 2151932 2152058 -187127496 - MIR SINE MIR -4 258 134 233 128 43 0 chr6 2152058 2152105 -187127449 - MIR SINE MIR -98 164 116 22 0 0 0 chr6 2152347 2152369 -187127185 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 2152409 2152441 -187127113 + AT_rich Low_complexity Low_complexity 1 32 0 2253 206 7 0 chr6 2153501 2153937 -187125617 + L1PA16 LINE L1 3648 4086 -2060 3331 152 6 11 chr6 2153938 2154330 -187125224 + L1PA16 LINE L1 5649 6039 -127 2745 130 25 35 chr6 2154330 2154762 -187124792 - MSTA LTR MaLR 0 428 1 3331 152 6 11 chr6 2154762 2154889 -187124665 + L1PA16 LINE L1 6039 6165 -1 1387 209 49 57 chr6 2155497 2155865 -187123689 + MLT1A1 LTR MaLR 1 365 0 30 0 0 0 chr6 2156778 2156808 -187122746 + AT_rich Low_complexity Low_complexity 1 30 0 187 196 206 52 chr6 2156899 2156996 -187122558 - L3 LINE CR1 -884 693 582 2301 84 0 26 chr6 2157032 2157342 -187122212 + AluY SINE Alu 1 302 -9 1081 276 157 28 chr6 2157418 2157586 -187121968 + L2 LINE L2 2353 2498 -815 13768 136 50 45 chr6 2157586 2158867 -187120687 + Tigger1 DNA MER2_type 1 1300 -1118 1805 161 0 7 chr6 2158867 2159152 -187120402 - AluJb SINE Alu -27 285 3 13768 136 50 45 chr6 2159152 2160277 -187119277 + Tigger1 DNA MER2_type 1300 2418 0 1081 276 157 28 chr6 2160277 2160727 -187118827 + L2 LINE L2 2498 3056 -257 590 175 165 10 chr6 2160760 2160954 -187118600 - MER5C DNA MER1_type 0 324 101 468 226 0 21 chr6 2161105 2161198 -187118356 - L2 LINE L2 -38 3275 3185 283 178 89 0 chr6 2162032 2162107 -187117447 - MIR SINE MIR -65 197 115 23 68 0 0 chr6 2162127 2162171 -187117383 + AT_rich Low_complexity Low_complexity 1 44 0 284 346 19 56 chr6 2163679 2163877 -187115677 - MIR SINE MIR -51 211 19 298 281 133 31 chr6 2165587 2165715 -187113839 - MER5A DNA MER1_type -2 187 36 422 313 48 12 chr6 2166527 2166693 -187112861 - MIR SINE MIR -70 192 21 6332 187 84 71 chr6 2167522 2169106 -187110448 + MER52A LTR ERV1 46 1755 0 1462 285 114 9 chr6 2169177 2169808 -187109746 + MER20B DNA MER1_type 30 726 -57 2468 63 10 0 chr6 2169867 2170167 -187109387 - AluY SINE Alu -8 303 1 742 199 0 22 chr6 2171846 2171982 -187107572 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr6 2171983 2172013 -187107541 + AT_rich Low_complexity Low_complexity 1 30 0 303 323 81 37 chr6 2174068 2174229 -187105325 + MIR SINE MIR 13 180 -82 323 248 181 53 chr6 2175498 2175764 -187103790 + L2 LINE L2 2678 2977 -337 278 298 69 30 chr6 2175901 2176032 -187103522 + L2 LINE L2 3137 3272 0 606 273 207 19 chr6 2176211 2176530 -187103024 - L2 LINE L2 0 3313 2935 187 294 49 29 chr6 2177551 2177653 -187101901 - L2 LINE L2 -275 3038 2935 330 263 88 18 chr6 2180548 2180662 -187098892 - L2 LINE L2 -1 3271 3150 1086 219 35 0 chr6 2180664 2180865 -187098689 - MER3 DNA MER1_type 0 209 2 430 300 86 49 chr6 2181181 2181424 -187098130 - MIR SINE MIR 0 262 11 530 325 48 11 chr6 2181511 2181779 -187097775 + L2 LINE L2 2543 2820 -494 2358 92 3 0 chr6 2182123 2182418 -187097136 + AluSp SINE Alu 1 296 -17 626 210 150 18 chr6 2182783 2182950 -187096604 - MER5A DNA MER1_type 0 189 1 814 256 58 73 chr6 2183246 2183641 -187095913 - MLT1J LTR MaLR -86 425 37 329 140 0 0 chr6 2183781 2183831 -187095723 + L2 LINE L2 3223 3272 0 307 382 14 7 chr6 2184487 2184631 -187094923 - MIR3 SINE MIR -43 165 21 420 71 0 0 chr6 2185695 2185751 -187093803 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 0 0 0 chr6 2185753 2185774 -187093780 + (TC)n Simple_repeat Simple_repeat 2 22 0 438 283 205 10 chr6 2186325 2186530 -187093024 + MIR SINE MIR 18 262 0 306 274 24 0 chr6 2186648 2186732 -187092822 + MLT1L LTR MaLR 191 276 -339 2054 133 148 13 chr6 2186942 2187319 -187092235 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr6 2188854 2188876 -187090678 + (A)n Simple_repeat Simple_repeat 1 22 0 372 270 56 92 chr6 2189436 2189632 -187089922 + MIR SINE MIR 28 216 -46 1891 197 70 95 chr6 2190076 2190457 -187089097 + L1MC5 LINE L1 6738 7127 -834 1952 159 18 9 chr6 2190457 2190797 -187088757 - MER2 DNA MER2_type 0 344 2 1891 197 70 95 chr6 2190797 2190828 -187088726 + L1MC5 LINE L1 7127 7157 -804 769 204 0 0 chr6 2190828 2190960 -187088594 - FLAM_C SINE Alu 0 133 2 1891 197 70 95 chr6 2190960 2191383 -187088171 + L1MC5 LINE L1 7157 7515 -446 325 234 28 19 chr6 2191385 2191412 -187088142 + GA-rich Low_complexity Low_complexity 2 27 -82 1936 136 96 6 chr6 2191412 2191744 -187087810 - THE1B LTR MaLR -2 362 1 325 234 28 19 chr6 2191744 2191823 -187087731 + GA-rich Low_complexity Low_complexity 27 109 0 874 245 68 45 chr6 2191823 2192264 -187087290 + L1MC5 LINE L1 7475 7925 -36 492 214 0 0 chr6 2192729 2192818 -187086736 + FLAM_A SINE Alu 5 93 -49 22 94 0 0 chr6 2193494 2193558 -187085996 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr6 2194796 2194822 -187084732 + AT_rich Low_complexity Low_complexity 1 26 0 249 296 68 0 chr6 2194922 2195010 -187084544 - MIR SINE MIR -85 177 84 951 179 6 0 chr6 2195098 2195260 -187084294 + FRAM SINE Alu 1 163 -13 574 206 269 36 chr6 2195600 2195853 -187083701 - MER5C DNA MER1_type 0 324 13 268 109 0 43 chr6 2195965 2195977 -187083577 - MER46A DNA MER2_type -82 154 145 564 181 93 7 chr6 2195977 2196116 -187083438 + Tigger4(Zombi) DNA MER2_type 1 155 -2576 * 5242 139 17 15 chr6 2196110 2196978 -187082576 + Tigger4(Zombi) DNA MER2_type 1862 2731 0 1163 209 42 72 chr6 2197044 2197351 -187082203 + AluJo SINE Alu 4 301 -1 2434 59 0 26 chr6 2197531 2197834 -187081720 - AluY SINE Alu -16 295 1 1686 156 99 47 chr6 2198934 2199246 -187080308 + MLT2D LTR ERVL 8 302 -112 279 0 0 0 chr6 2199246 2199277 -187080277 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1686 156 99 47 chr6 2199277 2199296 -187080258 + MLT2D LTR ERVL 302 319 -95 198 103 0 0 chr6 2199296 2199325 -187080229 + (TA)n Simple_repeat Simple_repeat 1 29 0 1686 156 99 47 chr6 2199325 2199376 -187080178 + MLT2D LTR ERVL 319 411 -3 463 318 180 23 chr6 2199526 2200353 -187079201 - L2 LINE L2 -559 2755 1799 500 225 230 6 chr6 2200961 2201139 -187078415 - MIR SINE MIR 0 262 45 1801 158 0 34 chr6 2201184 2201505 -187078049 + AluJb SINE Alu 1 311 0 216 135 0 0 chr6 2202152 2202189 -187077365 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 297 235 42 42 chr6 2203188 2203307 -187076247 + L1ME4a LINE L1 6001 6119 -2 185 105 0 26 chr6 2203330 2203368 -187076186 + (TA)n Simple_repeat Simple_repeat 2 38 0 1584 166 34 48 chr6 2205436 2205731 -187073823 + AluJo SINE Alu 1 291 -21 1509 198 0 20 chr6 2207422 2207720 -187071834 + AluJb SINE Alu 1 292 -20 256 214 207 35 chr6 2208734 2208879 -187070675 - LTR67 LTR ERVL -25 532 363 670 194 29 24 chr6 2209088 2209258 -187070296 + L1MB5 LINE L1 5941 6111 -63 874 206 75 20 chr6 2209531 2209684 -187069870 - MER58A DNA MER1_type -2207 213 45 1955 138 0 16 chr6 2209684 2209989 -187069565 + AluSx SINE Alu 1 300 -12 874 206 75 20 chr6 2209989 2210034 -187069520 - MER58A DNA MER1_type -2375 45 4 384 181 181 0 chr6 2210132 2210226 -187069328 - L2 LINE L2 -6 3307 3197 2125 82 0 4 chr6 2210511 2210778 -187068776 + AluSq SINE Alu 40 305 -8 2308 77 3 0 chr6 2211011 2211296 -187068258 + AluSp SINE Alu 22 307 -6 1518 196 26 22 chr6 2211670 2211981 -187067573 + AluJo SINE Alu 1 312 0 1808 227 57 41 chr6 2212051 2212562 -187066992 + LTR40a LTR ERVL 1 519 0 2307 106 0 0 chr6 2213666 2213968 -187065586 - AluSx SINE Alu -10 302 1 1288 146 77 49 chr6 2214252 2214498 -187065056 + AluJo SINE Alu 1 253 -59 484 111 81 0 chr6 2214900 2214999 -187064555 + L1MA5 LINE L1 6194 6300 0 2158 113 7 10 chr6 2215191 2215492 -187064062 + AluSx SINE Alu 1 300 -12 2281 78 0 45 chr6 2215834 2216143 -187063411 - AluY SINE Alu -16 295 1 987 154 13 0 chr6 2216620 2216776 -187062778 + AluSg/x SINE Alu 153 310 0 269 233 0 0 chr6 2216830 2216890 -187062664 + MIR SINE MIR 200 259 -3 1305 223 18 24 chr6 2217015 2217343 -187062211 + MSTB1-int LTR MaLR 471 796 -855 977 147 73 82 chr6 2217365 2217597 -187061957 + MSTB1-int LTR MaLR 1422 1651 0 2476 138 58 10 chr6 2217597 2218009 -187061545 + MSTB1 LTR MaLR 1 432 0 335 271 231 5 chr6 2218807 2219010 -187060544 + MIR SINE MIR 4 252 -10 1728 158 3 37 chr6 2219990 2220312 -187059242 - AluJo SINE Alu -1 311 1 491 247 140 5 chr6 2220349 2220535 -187059019 + MIR SINE MIR 51 261 -1 24 0 0 0 chr6 2221433 2221457 -187058097 + GC_rich Low_complexity Low_complexity 1 24 0 2434 76 0 3 chr6 2223096 2223397 -187056157 + AluSq SINE Alu 1 300 -13 1617 172 151 9 chr6 2223670 2224001 -187055553 - MLT1B LTR MaLR -10 380 3 1123 167 44 0 chr6 2224232 2224436 -187055118 + MER20 DNA MER1_type 6 218 -1 4318 181 35 27 chr6 2225090 2225929 -187053625 + MER21B LTR ERV1 10 854 -9 289 320 17 3 chr6 2225938 2226075 -187053479 - MIR SINE MIR -62 146 18 590 182 172 35 chr6 2226416 2226619 -187052935 - L1MD2 LINE L1 -11 6348 6118 1350 187 97 0 chr6 2226626 2226894 -187052660 - AluJb SINE Alu -18 294 1 822 151 0 22 chr6 2226901 2227040 -187052514 - AluJo SINE Alu -176 136 1 2039 189 72 72 chr6 2227040 2227232 -187052322 - L1MD2 LINE L1 -226 6133 5942 1637 181 29 0 chr6 2227232 2227508 -187052046 + AluJo SINE Alu 1 284 -28 2039 189 72 72 chr6 2227508 2227635 -187051919 - L1MD2 LINE L1 -417 5942 5816 2141 101 3 3 chr6 2227635 2227922 -187051632 - AluSx SINE Alu -25 287 1 712 268 60 40 chr6 2227922 2228172 -187051382 - L1MB8 LINE L1 -353 5825 5571 2039 189 72 72 chr6 2227922 2228140 -187051414 - L1MD2 LINE L1 -542 5817 5595 271 221 13 26 chr6 2228195 2228272 -187051282 + LTR33A LTR ERVL 446 521 -2 222 37 0 0 chr6 2228410 2228437 -187051117 + (T)n Simple_repeat Simple_repeat 1 27 0 2410 90 0 3 chr6 2228678 2228979 -187050575 - AluSp SINE Alu -13 300 1 1157 134 0 0 chr6 2229290 2229461 -187050093 - AluSx SINE Alu -4 306 136 572 114 0 0 chr6 2229461 2229540 -187050014 - AluSx SINE Alu -228 84 6 213 132 0 0 chr6 2229555 2229593 -187049961 + (T)n Simple_repeat Simple_repeat 1 38 0 438 276 0 24 chr6 2230824 2230951 -187048603 + MLT1L LTR MaLR 127 250 -365 1390 246 57 38 chr6 2231065 2231553 -187048001 - MLT1H1 LTR MaLR -83 472 7 1845 245 39 11 chr6 2231614 2232125 -187047429 - MLT1E LTR MaLR 0 593 1 773 232 40 119 chr6 2232140 2232648 -187046906 - MLT1H1 LTR MaLR -34 521 71 2557 77 3 0 chr6 2232867 2233179 -187046375 + AluSp SINE Alu 1 313 0 478 281 88 11 chr6 2233338 2233555 -187045999 + MLT1L LTR MaLR 263 605 -10 225 0 0 0 chr6 2233819 2233844 -187045710 + (T)n Simple_repeat Simple_repeat 1 25 0 960 186 155 75 chr6 2233865 2234214 -187045340 + MSTD LTR MaLR 1 377 -19 414 0 0 0 chr6 2234214 2234260 -187045294 + (CA)n Simple_repeat Simple_repeat 1 46 0 1885 216 42 13 chr6 2234427 2234881 -187044673 - MLT1C LTR MaLR 0 467 1 530 268 82 41 chr6 2235097 2235317 -187044237 - MIR SINE MIR -14 248 20 647 309 62 9 chr6 2235406 2235726 -187043828 - L1MC/D LINE L1 -2217 5591 5255 667 178 45 45 chr6 2235867 2236024 -187043530 - FRAM SINE Alu -5 161 5 1145 161 75 54 chr6 2236024 2236169 -187043385 - AluJo SINE Alu 0 312 12 2284 118 0 7 chr6 2236462 2236766 -187042788 - AluSx SINE Alu -10 302 1 25 31 0 0 chr6 2237245 2237277 -187042277 + AT_rich Low_complexity Low_complexity 1 32 0 5877 195 30 23 chr6 2237280 2238628 -187040926 - L1MC1 LINE L1 0 6333 4957 231 36 0 0 chr6 2238628 2238656 -187040898 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5877 195 30 23 chr6 2238656 2239881 -187039673 - L1MC1 LINE L1 -1376 4957 3742 619 222 15 0 chr6 2240077 2240212 -187039342 - MLT1G1 LTR MaLR 0 595 459 336 265 185 31 chr6 2240221 2240462 -187039092 - MLT1G1 LTR MaLR -196 346 98 * 896 211 5 0 chr6 2240459 2240644 -187038910 + MLT1B LTR MaLR 205 390 0 1115 189 110 8 chr6 2241492 2241756 -187037798 - MER21B LTR ERV1 -554 309 19 347 279 0 0 chr6 2241779 2241858 -187037696 - MER21B LTR ERV1 -773 90 12 22 0 0 0 chr6 2242761 2242783 -187036771 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr6 2242956 2242979 -187036575 + (A)n Simple_repeat Simple_repeat 1 23 0 283 169 17 51 chr6 2243500 2243559 -187035995 - L2 LINE L2 0 3313 3257 22 0 0 0 chr6 2244601 2244623 -187034931 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 2244797 2244818 -187034736 + (A)n Simple_repeat Simple_repeat 1 21 0 283 169 17 51 chr6 2245339 2245398 -187034156 - L2 LINE L2 0 3313 3257 605 92 0 0 chr6 2245605 2245681 -187033873 + AluSq/x SINE Alu 36 111 -201 1676 266 246 5 chr6 2245730 2246217 -187033337 - L2 LINE L2 -1937 1377 1009 342 0 0 0 chr6 2246217 2246255 -187033299 + (TG)n Simple_repeat Simple_repeat 2 39 0 1676 266 246 5 chr6 2246255 2246659 -187032895 - L2 LINE L2 -2305 1009 271 372 177 42 186 chr6 2246663 2246878 -187032676 - MER5A DNA MER1_type -1 188 5 566 234 64 0 chr6 2246881 2247022 -187032532 + MER33 DNA MER1_type 8 157 -167 1490 158 12 12 chr6 2247029 2247275 -187032279 + AluJo SINE Alu 5 250 -62 1393 192 38 23 chr6 2247295 2247639 -187031915 - MLT1A1 LTR MaLR -11 354 6 1937 156 0 14 chr6 2247658 2247946 -187031608 - AluJo SINE Alu -28 284 1 379 187 73 0 chr6 2247947 2248070 -187031484 + MER33 DNA MER1_type 165 296 -28 250 299 133 14 chr6 2248120 2248331 -187031223 - L2 LINE L2 -3037 277 42 661 229 16 0 chr6 2248332 2248515 -187031039 - MER114 LTR ERV -447 201 16 4896 135 19 37 chr6 2248610 2249497 -187030057 - MER4D LTR ERV1 0 872 2 505 279 31 12 chr6 2249922 2250083 -187029471 + MER41C LTR ERV1 1 164 -390 349 216 14 0 chr6 2250074 2250148 -187029406 + MER41D LTR ERV1 483 557 0 * 1147 168 0 0 chr6 2251704 2251877 -187027677 + FAM SINE Alu 1 173 -2 831 201 0 12 chr6 2253242 2253406 -187026148 + MER5B DNA MER1_type 17 178 0 557 243 18 41 chr6 2254165 2254393 -187025161 + L1ME2 LINE L1 5941 6166 0 270 255 38 19 chr6 2254502 2254608 -187024946 + L1MC4 LINE L1 7924 8031 -11 410 280 49 7 chr6 2254785 2254928 -187024626 - MIR SINE MIR -2 260 112 198 0 0 0 chr6 2255004 2255026 -187024528 + (T)n Simple_repeat Simple_repeat 1 22 0 302 143 0 20 chr6 2255026 2255075 -187024479 - MER5B DNA MER1_type -114 64 17 21 0 0 0 chr6 2255214 2255235 -187024319 + AT_rich Low_complexity Low_complexity 1 21 0 212 59 29 0 chr6 2255270 2255304 -187024250 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2109 75 0 0 chr6 2255306 2255560 -187023994 - AluY SINE Alu -31 280 27 2380 101 0 0 chr6 2255560 2255864 -187023690 - AluSx SINE Alu -6 306 1 2137 117 7 0 chr6 2255992 2256282 -187023272 - AluSx SINE Alu -20 292 1 7878 165 14 23 chr6 2256284 2256716 -187022838 - L1MA9 LINE L1 -61 6251 5817 2438 68 0 0 chr6 2256716 2257011 -187022543 - AluY SINE Alu 0 311 17 7878 165 14 23 chr6 2257011 2259123 -187020431 - L1MA9 LINE L1 -495 5817 3728 873 364 35 33 chr6 2260511 2261053 -187018501 - L2 LINE L2 -30 3242 2695 1823 140 3 56 chr6 2261059 2261207 -187018347 + AluSx SINE Alu 1 124 -188 2352 92 10 0 chr6 2261207 2261512 -187018042 + AluSp SINE Alu 1 308 -5 1823 140 3 56 chr6 2261512 2261684 -187017870 + AluSx SINE Alu 124 304 -8 23 0 0 0 chr6 2261758 2261781 -187017773 + AT_rich Low_complexity Low_complexity 1 23 0 707 266 104 70 chr6 2262425 2262861 -187016693 + L1MEc LINE L1 789 1209 -5187 2225 128 10 49 chr6 2262861 2263251 -187016303 - THE1C LTR MaLR 0 375 1 707 266 104 70 chr6 2263251 2263541 -187016013 + L1MEc LINE L1 1209 1557 -4839 705 197 31 0 chr6 2263541 2263668 -187015886 + FLAM_A SINE Alu 1 131 -2 707 266 104 70 chr6 2263668 2263882 -187015672 + L1MEc LINE L1 1557 1762 -4634 889 274 133 9 chr6 2263993 2264642 -187014912 + L1MEc LINE L1 3198 3926 -2289 30032 107 14 59 chr6 2264648 2271094 -187008460 + L1PA7 LINE L1 12 6153 -1 5625 143 35 14 chr6 2271216 2272579 -187006975 + L1PB3 LINE L1 4186 5518 -705 1992 146 9 25 chr6 2272579 2272894 -187006660 - AluJo SINE Alu -2 310 1 5625 143 35 14 chr6 2272894 2272987 -187006567 + L1PB3 LINE L1 5518 5607 -616 1620 149 16 68 chr6 2272987 2273308 -187006246 + AluJb SINE Alu 3 306 -6 5625 143 35 14 chr6 2273308 2273851 -187005703 + L1PB3 LINE L1 5607 6223 0 1646 248 139 16 chr6 2273885 2274774 -187004780 + L1M4 LINE L1 4268 5266 -880 186 43 0 0 chr6 2275382 2275405 -187004149 + (T)n Simple_repeat Simple_repeat 1 23 0 1844 146 45 3 chr6 2275722 2276058 -187003496 - LTR35 LTR ERV1 0 618 269 1079 97 11 17 chr6 2276058 2276233 -187003321 + THE1C-int LTR MaLR 1407 1580 0 2074 102 6 42 chr6 2276233 2276594 -187002960 + THE1C LTR MaLR 1 431 -26 1975 195 103 55 chr6 2276654 2277171 -187002383 + MER31-int LTR ERV1 3266 3757 -2512 2232 148 13 82 chr6 2277171 2277624 -187001930 - MER61B LTR ERV1 -3 422 1 1975 195 103 55 chr6 2277624 2277651 -187001903 + MER31-int LTR ERV1 3757 5132 -1137 1289 150 0 162 chr6 2277651 2278010 -187001544 + AluSx SINE Alu 6 306 -6 871 164 26 9 chr6 2278018 2278194 -187001360 + MER31-int LTR ERV1 3861 4010 -926 18261 62 3 22 chr6 2278234 2281420 -186998134 + L1PA6 LINE L1 2974 6154 0 22863 74 3 5 chr6 2281425 2284486 -186995068 + HERVL-A1 LTR ERVL 1564 4617 -1037 19538 65 20 12 chr6 2284590 2289119 -186990435 - Harlequin LTR ERV1 -1684 5212 575 447 35 0 0 chr6 2289219 2289277 -186990277 + HERVL-A1 LTR ERVL 5597 5654 0 3112 68 57 9 chr6 2289277 2289660 -186989894 + MLT2A1 LTR ERVL 1 407 -37 243 0 0 0 chr6 2289660 2289687 -186989867 + (TA)n Simple_repeat Simple_repeat 1 27 0 3112 68 57 9 chr6 2289687 2289727 -186989827 + MLT2A1 LTR ERVL 407 444 0 753 221 111 23 chr6 2291571 2291587 -186987967 + MLT1J LTR MaLR 217 230 -281 2428 102 0 3 chr6 2291587 2291901 -186987653 - AluSq SINE Alu 0 313 1 753 221 111 23 chr6 2291901 2292101 -186987453 + MLT1J LTR MaLR 230 452 -59 499 224 48 20 chr6 2292192 2292328 -186987226 + MLT1A1 LTR MaLR 1 140 -225 1367 148 4 13 chr6 2292328 2292565 -186986989 - MER21B LTR ERV1 0 863 629 1812 166 73 34 chr6 2292565 2293005 -186986549 - LTR2B LTR ERV1 0 490 34 42163 62 24 18 chr6 2293019 2299805 -186979749 - Harlequin LTR ERV1 0 6896 1 1804 184 84 32 chr6 2299805 2300267 -186979287 - LTR2B LTR ERV1 0 490 5 * 3251 171 57 11 chr6 2300256 2300290 -186979264 - MER21B LTR ERV1 -225 638 607 207 0 0 0 chr6 2300290 2300313 -186979241 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3251 171 57 11 chr6 2300313 2300888 -186978666 - MER21B LTR ERV1 -256 607 1 2115 170 30 25 chr6 2300973 2301409 -186978145 - MER21B-int LTR ERV1 -55 4136 3699 2113 184 100 107 chr6 2301413 2302250 -186977304 - LTR28 LTR ERV1 0 1020 109 400 239 254 0 chr6 2302262 2302404 -186977150 - LTR28 LTR ERV1 -842 178 1 3009 165 79 2 chr6 2302404 2302985 -186976569 - MER21B-int LTR ERV1 -494 3697 3072 9055 210 39 30 chr6 2303427 2305150 -186974404 - L1M4c LINE L1 -1167 5215 3509 2335 119 3 0 chr6 2305150 2305461 -186974093 - AluSx SINE Alu 0 312 1 9055 210 39 30 chr6 2305461 2306092 -186973462 - L1M4c LINE L1 -2873 3509 2885 2092 149 126 5 chr6 2306092 2306474 -186973080 + MSTA LTR MaLR 1 428 0 8941 177 29 1 chr6 2306474 2308080 -186971474 + MSTA-int LTR MaLR 1 1651 0 2046 147 126 11 chr6 2308080 2308462 -186971092 + MSTA LTR MaLR 1 426 -2 9055 210 39 30 chr6 2308462 2308826 -186970728 - L1M4c LINE L1 -3496 2886 2470 916 234 60 22 chr6 2308847 2309095 -186970459 - L1M4c LINE L1 -3916 2468 2231 500 30 0 15 chr6 2309095 2309162 -186970392 + (TA)n Simple_repeat Simple_repeat 2 67 0 2231 101 7 13 chr6 2309162 2309460 -186970094 - AluSp SINE Alu -17 296 1 916 234 60 22 chr6 2309460 2309574 -186969980 - L1M4c LINE L1 -4152 2232 2091 1831 258 30 25 chr6 2309744 2310387 -186969167 - L1M4c LINE L1 -4663 1721 1076 371 98 16 0 chr6 2310415 2310476 -186969078 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1972 158 10 0 chr6 2310476 2310780 -186968774 - AluSx SINE Alu -5 307 1 843 275 48 3 chr6 2310788 2310990 -186968564 - L1 LINE L1 -4813 1840 1616 267 31 0 0 chr6 2310990 2311022 -186968532 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 843 275 48 3 chr6 2311022 2311154 -186968400 - L1 LINE L1 -5037 1616 1491 246 345 11 0 chr6 2311433 2311520 -186968034 - L1 LINE L1 -5219 1434 1347 285 200 0 0 chr6 2312031 2312091 -186967463 + L1MC5 LINE L1 7345 7404 -557 891 234 10 5 chr6 2312399 2312608 -186966946 - MLT1C LTR MaLR 0 467 258 735 226 14 14 chr6 2312643 2312825 -186966729 - FRAM SINE Alu 0 182 1 1844 160 49 0 chr6 2312837 2313153 -186966401 - AluSx SINE Alu 0 312 6 662 218 71 0 chr6 2313157 2313327 -186966227 - MLT1C LTR MaLR -285 182 1 1586 111 0 5 chr6 2313420 2313627 -186965927 + AluSg/x SINE Alu 95 300 -10 1305 217 41 77 chr6 2314380 2314823 -186964731 + L1ME2 LINE L1 5555 5981 -183 311 143 32 0 chr6 2314873 2314936 -186964618 - L1PA13 LINE L1 0 6163 6099 378 295 75 20 chr6 2315428 2315723 -186963831 + L1MEd LINE L1 981 1291 -4914 234 207 207 11 chr6 2315890 2315977 -186963577 + HAL1 LINE L1 1500 1603 -904 1698 171 24 20 chr6 2316082 2316187 -186963367 + AluJo SINE Alu 6 109 -203 2142 129 36 38 chr6 2316187 2316552 -186963002 - THE1B LTR MaLR 0 364 1 1698 171 24 20 chr6 2316552 2316738 -186962816 + AluJo SINE Alu 109 298 -14 1564 173 32 160 chr6 2316993 2317554 -186962000 + LTR45B LTR ERV1 1 489 0 2409 95 0 0 chr6 2317603 2317950 -186961604 + L1PB1 LINE L1 5624 5970 -181 942 112 0 0 chr6 2317950 2318075 -186961479 + AluSq/x SINE Alu 1 125 -188 1247 116 5 11 chr6 2318081 2318270 -186961284 + L1PB1 LINE L1 5959 6146 -5 281 216 14 0 chr6 2318386 2318460 -186961094 - Charlie1 DNA MER1_type -506 2255 2181 390 245 73 55 chr6 2318508 2318835 -186960719 + L1MEd LINE L1 2120 2452 -3944 1208 149 6 0 chr6 2318847 2319022 -186960532 + AluSx SINE Alu 1 176 -136 619 224 22 22 chr6 2319047 2319230 -186960324 + L1ME3A LINE L1 5774 5956 -214 339 272 0 0 chr6 2319393 2319518 -186960036 + (TA)n Simple_repeat Simple_repeat 1 125 0 2334 160 54 69 chr6 2319521 2320116 -186959438 + L1MA5A LINE L1 1416 2001 -4788 576 187 0 0 chr6 2320117 2320240 -186959314 + GA-rich Low_complexity Low_complexity 3 125 0 2242 233 19 4 chr6 2320240 2320827 -186958727 + L1MA5A LINE L1 1987 2572 -4217 2350 88 109 21 chr6 2320828 2321214 -186958340 - MER4A LTR ERV1 0 664 245 8153 197 16 26 chr6 2321249 2321974 -186957580 + L1MA5A LINE L1 3388 4119 -2669 1978 132 0 7 chr6 2321974 2322246 -186957308 + AluSg SINE Alu 1 270 -40 8153 197 16 26 chr6 2322246 2323517 -186956037 + L1MA5A LINE L1 4119 5362 -1426 1523 195 85 13 chr6 2324672 2325061 -186954493 + L1MA5A LINE L1 5344 5760 -1028 732 74 11 0 chr6 2325066 2325161 -186954393 - AluSg/x SINE Alu -102 208 113 3819 126 23 16 chr6 2325284 2325363 -186954191 + L1MA5A LINE L1 5898 5975 -964 2166 135 0 0 chr6 2325363 2325659 -186953895 + AluSx SINE Alu 1 296 -16 3819 126 23 16 chr6 2325659 2326112 -186953442 + L1MA5A LINE L1 5975 6439 -500 432 0 0 0 chr6 2326112 2326160 -186953394 + (CA)n Simple_repeat Simple_repeat 2 49 0 3819 126 23 16 chr6 2326160 2326310 -186953244 + L1MA5A LINE L1 6439 6586 -353 373 75 25 88 chr6 2326306 2326328 -186953226 - L1MB4 LINE L1 -77 6103 6081 * 514 99 0 25 chr6 2326328 2326409 -186953145 - MADE1 DNA Mariner 0 80 2 373 75 25 88 chr6 2326409 2326466 -186953088 - L1MB4 LINE L1 -99 6081 6029 243 241 25 51 chr6 2326569 2326648 -186952906 - L2 LINE L2 0 3313 3237 * 292 243 14 0 chr6 2326645 2326715 -186952839 - MIR SINE MIR -3 259 189 270 244 38 28 chr6 2327276 2327394 -186952160 + MER5A DNA MER1_type 1 181 -8 2336 95 3 13 chr6 2327574 2327890 -186951664 - AluSq SINE Alu 0 313 1 300 247 54 11 chr6 2327902 2327995 -186951559 + MER58C DNA MER1_type 119 215 0 356 231 8 45 chr6 2328371 2328505 -186951049 - L1MC/D LINE L1 -2006 5802 5674 1866 157 11 55 chr6 2329080 2329122 -186950432 + MER89 LTR ERV1 195 237 -322 1800 140 11 18 chr6 2329122 2329407 -186950147 - AluJb SINE Alu -19 293 11 1866 157 11 55 chr6 2329407 2329746 -186949808 + MER89 LTR ERV1 237 559 0 428 167 78 29 chr6 2330038 2330140 -186949414 + MER89-int LTR ERV1 444 550 -6251 317 239 0 0 chr6 2330146 2330217 -186949337 + MER89-int LTR ERV1 520 590 -6211 * 1062 241 96 21 chr6 2330208 2330582 -186948972 + MER89-int LTR ERV1 878 1279 -5522 645 175 0 0 chr6 2330582 2330685 -186948869 + FLAM_C SINE Alu 16 118 -25 1042 212 8 115 chr6 2330711 2331112 -186948442 + MER89-int LTR ERV1 1274 1631 -5170 1832 248 77 64 chr6 2331177 2331946 -186947608 + MER89-int LTR ERV1 1650 2428 -4373 4149 143 18 28 chr6 2332237 2332493 -186947061 - L1PA16 LINE L1 0 6166 5909 1903 147 0 39 chr6 2332493 2332805 -186946749 + AluJb SINE Alu 1 300 -12 4149 143 18 28 chr6 2332805 2332947 -186946607 - L1PA16 LINE L1 -257 5909 5767 2172 75 3 10 chr6 2332947 2333263 -186946291 - AluY SINE Alu 0 311 1 4149 143 18 28 chr6 2333263 2333677 -186945877 - L1PA16 LINE L1 -399 5767 5361 509 229 9 9 chr6 2334670 2334788 -186944766 + MIR3 SINE MIR 69 187 -21 25 31 0 0 chr6 2335185 2335217 -186944337 + AT_rich Low_complexity Low_complexity 1 32 0 910 121 7 0 chr6 2335229 2335378 -186944176 + L1MA5A LINE L1 6146 6295 -2 487 224 74 20 chr6 2335831 2336022 -186943532 + MER58 DNA MER1_type 5 2417 -3 855 115 0 39 chr6 2338002 2338132 -186941422 - FLAM_C SINE Alu -7 126 2 2643 43 0 0 chr6 2338142 2338443 -186941111 - AluY SINE Alu -10 301 1 245 272 101 32 chr6 2338862 2339020 -186940534 + L2 LINE L2 2537 2705 -609 4431 162 34 28 chr6 2339022 2339067 -186940487 - L1MB4 LINE L1 -6 6174 6131 2400 92 0 3 chr6 2339067 2339373 -186940181 - AluSx SINE Alu -7 305 1 4431 162 34 28 chr6 2339373 2340221 -186939333 - L1MB4 LINE L1 -49 6131 5276 276 186 0 0 chr6 2340474 2340517 -186939037 - Alu SINE Alu -264 44 2 45 19 0 0 chr6 2391014 2391066 -186888488 + AT_rich Low_complexity Low_complexity 1 52 0 2725 18 16 0 chr6 2391066 2391466 -186888088 - L1PA4 LINE L1 -677 5478 5075 5972 21 6 0 chr6 2391466 2392144 -186887410 + L1PA4 LINE L1 5472 6154 -1 40 0 0 0 chr6 2392173 2392213 -186887341 + AT_rich Low_complexity Low_complexity 1 40 0 1051 260 9 0 chr6 2392445 2392664 -186886890 + MER58A DNA MER1_type 4 224 0 1143 158 164 75 chr6 2392913 2393248 -186886306 + MLT1A1 LTR MaLR 1 365 0 243 331 7 44 chr6 2393379 2393515 -186886039 - L2 LINE L2 -213 3059 2929 271 272 163 34 chr6 2394334 2394481 -186885073 + MIR3 SINE MIR 32 197 -11 356 211 56 7 chr6 2395514 2395656 -186883898 + (CA)n Simple_repeat Simple_repeat 2 150 0 327 131 54 15 chr6 2395695 2395825 -186883729 + (CA)n Simple_repeat Simple_repeat 2 136 0 473 208 46 17 chr6 2395867 2396040 -186883514 + (CA)n Simple_repeat Simple_repeat 2 179 0 1130 191 106 25 chr6 2396978 2397260 -186882294 - MER2 DNA MER2_type -28 317 13 425 198 10 0 chr6 2397560 2397661 -186881893 + GA-rich Low_complexity Low_complexity 3 104 0 305 198 293 0 chr6 2397661 2397777 -186881777 + MER103 DNA DNA 1 150 -16 207 0 0 0 chr6 2398780 2398803 -186880751 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr6 2399042 2399067 -186880487 + AT_rich Low_complexity Low_complexity 1 25 0 207 301 186 9 chr6 2399179 2399292 -186880262 + MIR3 SINE MIR 9 141 -67 343 309 32 0 chr6 2399763 2399889 -186879665 + L2 LINE L2 3182 3311 -2 2370 85 0 0 chr6 2400434 2400729 -186878825 + AluSc SINE Alu 1 295 -14 2228 122 0 6 chr6 2401075 2401386 -186878168 + AluSx SINE Alu 3 311 -1 1431 45 6 0 chr6 2403212 2403390 -186876164 - L1PA4 LINE L1 -3 6152 5974 392 171 14 0 chr6 2403634 2403704 -186875850 - MER82 DNA MER2_type 0 653 583 720 79 0 0 chr6 2403705 2403794 -186875760 - AluSq/x SINE Alu -204 109 21 555 107 19 10 chr6 2406275 2406285 -186873269 + (TCTA)n Simple_repeat Simple_repeat 1 9 -95 1422 224 120 41 chr6 2406285 2406750 -186872804 + MLT1D LTR MaLR 1 502 -3 555 107 19 10 chr6 2406750 2406842 -186872712 + (TCTA)n Simple_repeat Simple_repeat 9 104 0 2061 125 37 28 chr6 2406844 2407171 -186872383 + THE1B LTR MaLR 1 330 -34 396 271 13 12 chr6 2408401 2408720 -186870834 + (CA)n Simple_repeat Simple_repeat 1 319 0 257 251 0 123 chr6 2408900 2409071 -186870483 + MLT1K LTR MaLR 277 426 -162 211 200 0 0 chr6 2409085 2409120 -186870434 + polypurine Low_complexity Low_complexity 2 36 0 310 260 20 30 chr6 2409149 2409249 -186870305 + MLT1K LTR MaLR 472 570 -18 379 227 85 102 chr6 2409453 2409629 -186869925 - L2 LINE L2 -2 3311 3139 519 234 65 13 chr6 2409631 2409785 -186869769 + L1M4 LINE L1 5604 5765 -419 779 101 8 39 chr6 2410430 2410559 -186868995 - L1PA8 LINE L1 -1 6171 6047 190 270 90 45 chr6 2410656 2410767 -186868787 + L2 LINE L2 2928 3043 -229 313 294 87 0 chr6 2411255 2411381 -186868173 + L2 LINE L2 3136 3272 0 1954 141 77 0 chr6 2412274 2412587 -186866967 - MER1B DNA MER1_type 0 337 1 537 214 151 13 chr6 2412716 2412875 -186866679 + MER5A DNA MER1_type 4 184 -5 394 278 51 40 chr6 2412924 2413100 -186866454 + MIR SINE MIR 49 226 -36 277 293 281 0 chr6 2414904 2415071 -186864483 - MIR SINE MIR 0 262 49 243 259 214 0 chr6 2416173 2416304 -186863250 + MIR SINE MIR 48 206 -56 312 241 50 78 chr6 2417404 2417545 -186862009 - L2 LINE L2 0 3272 3136 332 310 120 0 chr6 2418308 2418408 -186861146 + MER81 DNA DNA 1 112 -2 252 288 91 0 chr6 2418428 2418560 -186860994 - MIR SINE MIR -62 200 57 1184 178 45 29 chr6 2418588 2418830 -186860724 - MLT1F1 LTR MaLR 0 567 322 15336 122 37 10 chr6 2419031 2419792 -186859762 + Tigger1 DNA MER2_type 1 740 -1678 2323 156 62 5 chr6 2419792 2420195 -186859359 - MSTB LTR MaLR 0 426 1 15336 122 37 10 chr6 2420195 2421786 -186857768 + Tigger1 DNA MER2_type 740 2418 0 2313 97 0 7 chr6 2421822 2422122 -186857432 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 2422333 2422364 -186857190 + AT_rich Low_complexity Low_complexity 1 31 0 269 272 7 66 chr6 2422691 2422834 -186856720 + MIR SINE MIR 92 221 -41 205 176 0 20 chr6 2423549 2423600 -186855954 + L2 LINE L2 2228 2277 -1037 757 214 12 24 chr6 2423601 2423769 -186855785 + MER63B DNA MER1_type 2 167 -269 868 298 96 51 chr6 2423807 2424419 -186855135 + L2 LINE L2 2307 2953 -319 2135 119 0 0 chr6 2424419 2424712 -186854842 - AluSx SINE Alu -15 297 5 868 298 96 51 chr6 2424712 2424789 -186854765 + L2 LINE L2 2953 3025 -247 793 281 30 20 chr6 2424832 2425129 -186854425 - L1M3 LINE L1 -606 5577 5275 2116 107 78 29 chr6 2425129 2425476 -186854078 - THE1B LTR MaLR 0 364 1 793 281 30 20 chr6 2425476 2425602 -186853952 - L1M3 LINE L1 -908 5275 5152 793 251 121 57 chr6 2425673 2426374 -186853180 - L1MEd LINE L1 -4722 1588 820 1431 196 31 14 chr6 2426374 2426665 -186852889 + AluJo SINE Alu 1 296 -16 793 251 121 57 chr6 2426665 2426712 -186852842 - L1MEd LINE L1 -5490 820 777 507 17 0 0 chr6 2426727 2426787 -186852767 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 300 345 84 35 chr6 2426882 2427085 -186852469 + LTR16A LTR ERVL 119 331 -119 298 282 243 24 chr6 2427257 2427313 -186852241 - L1MEd LINE L1 -5446 673 631 1230 203 93 32 chr6 2427313 2427658 -186851896 + MER47A DNA MER2_type 1 366 0 298 282 243 24 chr6 2427658 2427934 -186851620 - L1MEd LINE L1 -5488 631 268 1884 133 60 0 chr6 2428945 2429230 -186850324 - AluJb SINE Alu -10 302 1 872 144 8 0 chr6 2429232 2429364 -186850190 - AluJb SINE Alu -179 133 1 232 328 62 25 chr6 2429369 2429723 -186849831 - L2 LINE L2 -1611 1703 1337 616 224 92 6 chr6 2430259 2430433 -186849121 - MER5A DNA MER1_type 0 189 1 2255 106 0 0 chr6 2430788 2431080 -186848474 - AluSx SINE Alu -16 296 5 23 0 0 0 chr6 2431709 2431732 -186847822 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 2432488 2432530 -186847024 + AT_rich Low_complexity Low_complexity 1 42 0 240 256 8 29 chr6 2432656 2432744 -186846810 + CT-rich Low_complexity Low_complexity 1 86 0 1800 166 10 3 chr6 2433108 2433403 -186846151 - AluJo SINE Alu -13 299 3 760 294 35 8 chr6 2435231 2435486 -186844068 - MIR SINE MIR 0 262 1 907 170 18 8 chr6 2435548 2435948 -186843606 + CT-rich Low_complexity Low_complexity 1 404 0 1008 165 62 0 chr6 2435959 2436135 -186843419 - AluJo SINE Alu -4 308 122 303 274 12 0 chr6 2436137 2436221 -186843333 + L1MC4 LINE L1 6608 6692 -1350 1499 165 44 0 chr6 2436231 2436480 -186843074 - AluJo SINE Alu -30 282 23 578 217 140 27 chr6 2436583 2436819 -186842735 + MLT1C LTR MaLR 147 425 -80 939 183 50 72 chr6 2436924 2437203 -186842351 - Charlie1 DNA MER1_type 0 2761 2489 42100 27 17 1 chr6 2437203 2443232 -186836322 - L1HS LINE L1 -3 6152 1 1402 203 34 6 chr6 2443235 2443585 -186835969 - Charlie1 DNA MER1_type -257 2504 2145 4763 171 21 19 chr6 2443595 2443638 -186835916 - L1MB3 LINE L1 -2 6181 6140 2144 94 17 3 chr6 2443638 2443935 -186835619 + AluSx SINE Alu 2 302 -10 4763 171 21 19 chr6 2443935 2444278 -186835276 - L1MB3 LINE L1 -43 6140 5799 297 51 0 0 chr6 2444278 2444317 -186835237 + (TG)n Simple_repeat Simple_repeat 2 40 0 4763 171 21 19 chr6 2444317 2445081 -186834473 - L1MB3 LINE L1 -384 5799 5027 1008 211 33 31 chr6 2445086 2445438 -186834116 - MLT1E LTR MaLR -124 453 9 260 153 143 102 chr6 2445445 2445543 -186834011 - L2 LINE L2 -597 2717 2616 257 279 44 0 chr6 2445576 2445644 -186833910 - L2 LINE L2 -9 3304 3234 2090 135 3 22 chr6 2445676 2446040 -186833514 - L1MA5 LINE L1 -6 6294 5938 924 157 7 0 chr6 2446042 2446195 -186833359 + L1MA5 LINE L1 5787 5940 -360 239 271 78 47 chr6 2447438 2447567 -186831987 - MER5A DNA MER1_type -2 187 55 * 240 310 70 10 chr6 2447468 2447568 -186831986 + MER5A DNA MER1_type 41 146 -43 2356 270 110 14 chr6 2447613 2448679 -186830875 - L2 LINE L2 -24 3289 1917 859 277 100 0 chr6 2448684 2448984 -186830570 - L2 LINE L2 -1622 1692 1363 584 330 75 4 chr6 2448991 2449230 -186830324 - L2 LINE L2 -2194 1120 865 213 39 0 0 chr6 2451047 2451073 -186828481 + (TA)n Simple_repeat Simple_repeat 2 27 0 1247 266 110 2 chr6 2451370 2451814 -186827740 + L1ME3 LINE L1 5659 6150 -12 185 315 37 0 chr6 2451846 2451900 -186827654 - L2 LINE L2 -88 3184 3129 323 312 46 107 chr6 2452118 2452641 -186826913 + L2 LINE L2 1915 2405 -909 361 266 243 54 chr6 2452957 2453435 -186826119 - MLT1K LTR MaLR -18 570 3 246 335 32 11 chr6 2454025 2454145 -186825409 + MIR3 SINE MIR 30 154 -54 357 273 41 67 chr6 2457472 2457666 -186821888 + L1MC5 LINE L1 7736 7924 -37 261 324 0 38 chr6 2457971 2458076 -186821478 + CT-rich Low_complexity Low_complexity 5 105 0 781 358 154 2 chr6 2458464 2458930 -186820624 + L3 LINE CR1 703 1239 -338 901 256 87 73 chr6 2459500 2459949 -186819605 + L1MDb LINE L1 782 1236 -5173 399 234 78 0 chr6 2459950 2460091 -186819463 + MER63 DNA MER1_type 911 1062 0 560 173 105 65 chr6 2462091 2462309 -186817245 + MER106B DNA MER1_type 10 1059 0 1814 144 47 3 chr6 2462464 2462763 -186816791 - AluSx SINE Alu 0 312 1 180 250 0 0 chr6 2463982 2464022 -186815532 + L2 LINE L2 3153 3192 -80 2392 65 0 0 chr6 2464050 2464344 -186815210 + AluY SINE Alu 1 294 -17 388 35 0 188 chr6 2464367 2464452 -186815102 - MADE1 DNA Mariner 0 80 12 889 250 100 109 chr6 2464830 2465263 -186814291 + MER110 LTR ERV1 80 484 -3 539 41 27 0 chr6 2465383 2465456 -186814098 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr6 2465470 2465491 -186814063 + AT_rich Low_complexity Low_complexity 1 21 0 1651 167 32 3 chr6 2465502 2465784 -186813770 + AluJb SINE Alu 1 290 -22 4721 148 14 3 chr6 2465864 2466640 -186812914 - L1MA7 LINE L1 0 6291 5507 998 186 5 0 chr6 2467353 2467541 -186812013 + MER53 DNA DNA 1 189 0 267 329 0 0 chr6 2468983 2469056 -186810498 - MIR3 SINE MIR -17 191 119 562 279 129 49 chr6 2471075 2471501 -186808053 - L2 LINE L2 0 3272 2813 464 135 0 0 chr6 2472053 2472127 -186807427 - L1MB8 LINE L1 -11 6167 6094 2110 106 7 3 chr6 2472162 2472455 -186807099 - AluSx SINE Alu -18 294 1 4362 178 21 22 chr6 2472457 2473429 -186806125 - L1MB4 LINE L1 -42 6138 5170 942 228 61 58 chr6 2474222 2474634 -186804920 - L1MC5 LINE L1 -30 7931 7519 26 0 0 0 chr6 2475336 2475362 -186804192 + AT_rich Low_complexity Low_complexity 1 26 0 1735 173 38 20 chr6 2476109 2476456 -186803098 - L1MC1 LINE L1 0 6333 5981 1243 157 175 92 chr6 2476458 2476622 -186802932 - LTR54B LTR ERV1 -2 496 347 2231 97 7 0 chr6 2476622 2476930 -186802624 - AluSq SINE Alu -3 310 1 1243 157 175 92 chr6 2476930 2477223 -186802331 - LTR54B LTR ERV1 -151 347 1 213 39 0 0 chr6 2477450 2477476 -186802078 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 2477635 2477657 -186801897 + AT_rich Low_complexity Low_complexity 1 22 0 221 116 0 23 chr6 2478043 2478086 -186801468 + (GGAGAA)n Simple_repeat Simple_repeat 1 42 0 344 309 73 0 chr6 2479257 2479393 -186800161 + MER117 DNA MER1_type 4 149 -48 1744 100 61 0 chr6 2480980 2481241 -186798313 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr6 2481243 2481265 -186798289 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 564 286 128 30 chr6 2482423 2482828 -186796726 + LTR16B LTR ERVL 20 464 0 2081 109 0 3 chr6 2483128 2483422 -186796132 - AluSc SINE Alu -16 293 1 310 268 116 27 chr6 2483770 2483882 -186795672 - MIR SINE MIR -37 225 104 1900 99 70 0 chr6 2484605 2484889 -186794665 - AluSx SINE Alu -8 304 1 2251 80 3 0 chr6 2485171 2485460 -186794094 - AluSp SINE Alu -23 290 1 424 263 67 59 chr6 2485566 2485836 -186793718 - L1MC1 LINE L1 -2036 5772 5501 1991 202 74 41 chr6 2486028 2486567 -186792987 - MER74A LTR ERVL 0 558 2 363 199 22 33 chr6 2487665 2487846 -186791708 + GA-rich Low_complexity Low_complexity 1 179 0 748 254 33 8 chr6 2487949 2488189 -186791365 + MLT1C LTR MaLR 210 455 -12 1424 289 74 9 chr6 2488932 2489458 -186790096 + L1ME3A LINE L1 5545 6104 -66 279 347 76 0 chr6 2489859 2490003 -186789551 - LTR33 LTR ERVL -193 328 174 1954 141 0 7 chr6 2490444 2490741 -186788813 + AluJo SINE Alu 4 298 -14 2120 126 0 10 chr6 2491423 2491732 -186787822 + AluSc SINE Alu 1 306 -3 199 318 45 0 chr6 2494709 2494797 -186784757 + MIR SINE MIR 87 178 -84 374 294 35 0 chr6 2495899 2496042 -186783512 - MIR SINE MIR -67 195 48 917 202 54 9 chr6 2496057 2496280 -186783274 + MER58 DNA MER1_type 2 234 -107 402 177 0 0 chr6 2496280 2496342 -186783212 + MER58 DNA MER1_type 2346 2407 -13 712 195 50 6 chr6 2496366 2496525 -186783029 - MER5A DNA MER1_type -22 167 2 4185 160 69 90 chr6 2498163 2498486 -186781068 - LTR12 LTR ERV1 0 826 498 1558 117 4 9 chr6 2498486 2498717 -186780837 + AluY SINE Alu 81 310 -1 4185 160 69 90 chr6 2498717 2499237 -186780317 - LTR12 LTR ERV1 -328 498 1 2137 125 7 0 chr6 2499472 2499777 -186779777 + AluSx SINE Alu 1 307 -5 265 311 22 11 chr6 2500269 2500359 -186779195 - MIR3 SINE MIR -21 187 97 1777 203 68 6 chr6 2500421 2500903 -186778651 - MER69 DNA AcHobo -2 2524 2010 874 261 89 7 chr6 2500901 2501181 -186778373 - MER69 DNA AcHobo -658 568 266 * 3442 182 37 17 chr6 2501981 2502628 -186776926 - MER21B LTR ERV1 -1 862 203 42 57 0 0 chr6 2502822 2502892 -186776662 + GC_rich Low_complexity Low_complexity 1 70 0 342 0 0 0 chr6 2503572 2503610 -186775944 + (A)n Simple_repeat Simple_repeat 1 38 0 297 219 0 0 chr6 2506222 2506295 -186773259 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 109 33 3 chr6 2506489 2506792 -186772762 - AluSx SINE Alu 0 312 1 670 285 45 5 chr6 2506893 2507093 -186772461 + MER63A DNA MER1_type 2 209 -1 190 227 0 23 chr6 2507474 2507518 -186772036 - L3b LINE CR1 -13 1570 1528 1057 244 238 18 chr6 2507964 2508522 -186771032 - L2 LINE L2 -752 2562 1882 465 246 109 58 chr6 2508857 2509186 -186770368 - L1ME4a LINE L1 -6 6115 5770 565 293 63 10 chr6 2509444 2509649 -186769905 + MIR SINE MIR 5 220 -42 228 67 0 0 chr6 2509700 2509730 -186769824 + (TC)n Simple_repeat Simple_repeat 1 30 0 249 57 0 0 chr6 2509735 2509770 -186769784 + (CA)n Simple_repeat Simple_repeat 1 35 0 1772 180 31 0 chr6 2509770 2510058 -186769496 - AluJb SINE Alu -15 297 1 1964 173 17 0 chr6 2510799 2511151 -186768403 + MLT1B LTR MaLR 9 366 -24 4054 164 37 8 chr6 2511232 2511934 -186767620 + MER72 LTR ERV1 1 722 0 724 219 77 20 chr6 2512344 2512459 -186767095 + MER3 DNA MER1_type 3 135 -74 2309 144 25 0 chr6 2512459 2512814 -186766740 - THE1B LTR MaLR 0 364 1 724 219 77 20 chr6 2512814 2512894 -186766660 + MER3 DNA MER1_type 135 209 0 2279 117 0 0 chr6 2513505 2513814 -186765740 + AluSx SINE Alu 1 309 -3 337 168 262 40 chr6 2513848 2513997 -186765557 - MER53 DNA DNA -3 186 5 223 295 64 0 chr6 2514284 2514362 -186765192 + L2 LINE L2 3196 3278 -35 2520 198 30 85 chr6 2516177 2516908 -186762646 + LTR8 LTR ERV1 1 691 0 237 314 38 60 chr6 2516953 2517138 -186762416 + L2 LINE L2 2926 3106 -166 219 330 0 0 chr6 2517204 2517292 -186762262 + (CATA)n Simple_repeat Simple_repeat 1 88 0 189 189 0 0 chr6 2517355 2517392 -186762162 + L2 LINE L2 3274 3310 -3 333 205 219 53 chr6 2518778 2518929 -186760625 + MER5A DNA MER1_type 14 189 0 2172 129 0 0 chr6 2519421 2519723 -186759831 + AluSx SINE Alu 5 306 -6 409 91 0 0 chr6 2519723 2519778 -186759776 + L1PA13 LINE L1 5777 5831 -332 685 211 0 0 chr6 2520086 2520225 -186759329 - FLAM_A SINE Alu 0 142 4 250 297 152 51 chr6 2520289 2520389 -186759165 - L1ME4a LINE L1 -21 6100 6012 1878 134 43 7 chr6 2520389 2520688 -186758866 - AluSq SINE Alu -3 310 1 250 297 152 51 chr6 2520688 2520843 -186758711 - L1ME4a LINE L1 -109 6012 5819 392 220 22 0 chr6 2520899 2520990 -186758564 - L1ME4a LINE L1 -393 5728 5636 2268 90 7 3 chr6 2521507 2521797 -186757757 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr6 2523288 2523317 -186756237 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr6 2523389 2523419 -186756135 + (T)n Simple_repeat Simple_repeat 1 30 0 2016 120 0 24 chr6 2524065 2524356 -186755198 - AluSx SINE Alu -28 284 1 250 304 60 60 chr6 2524367 2524535 -186755019 - MER5B DNA MER1_type -7 171 4 742 164 70 0 chr6 2525014 2525142 -186754412 + FRAM SINE Alu 22 158 -18 306 313 21 0 chr6 2525463 2525559 -186753995 + (TG)n Simple_repeat Simple_repeat 1 98 0 376 262 170 7 chr6 2525816 2525957 -186753597 + MIR SINE MIR 88 251 -11 866 211 78 0 chr6 2528401 2528605 -186750949 + MER58A DNA MER1_type 1 220 -4 291 229 97 69 chr6 2530194 2530369 -186749185 + MER117 DNA MER1_type 1 180 -17 234 301 87 10 chr6 2532130 2532233 -186747321 - L2 LINE L2 0 3272 3162 392 194 14 0 chr6 2532489 2532561 -186746993 + MER81 DNA DNA 22 94 -20 360 316 65 26 chr6 2532666 2532755 -186746799 - L2 LINE L2 -470 2844 2745 2021 122 40 3 chr6 2532755 2533051 -186746503 - AluSc SINE Alu -2 307 1 360 316 65 26 chr6 2533051 2533116 -186746438 - L2 LINE L2 -569 2745 2684 231 119 24 24 chr6 2533189 2533231 -186746323 + MER63 DNA MER1_type 3 44 -392 2480 154 78 83 chr6 2533235 2533798 -186745756 - LTR31 LTR ERV1 0 619 60 869 86 39 17 chr6 2534193 2534426 -186745128 + (TAGA)n Simple_repeat Simple_repeat 2 239 0 2063 163 113 44 chr6 2534568 2535089 -186744465 - LTR31 LTR ERV1 -3 616 60 839 56 39 39 chr6 2535505 2535685 -186743869 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7236 162 21 41 chr6 2535847 2537248 -186742306 - L1MC3 LINE L1 -1 7784 6411 1063 104 0 0 chr6 2537248 2537383 -186742171 - AluSq/x SINE Alu -178 135 1 231 211 105 0 chr6 2537384 2537441 -186742113 - MLT1D LTR MaLR -415 90 28 4154 264 39 37 chr6 2537516 2538061 -186741493 - L1M4 LINE L1 -1572 4574 4032 1800 135 8 0 chr6 2538061 2538327 -186741227 + AluSq SINE Alu 1 268 -45 4154 264 39 37 chr6 2538327 2539430 -186740124 - L1M4 LINE L1 -2114 4032 2922 248 316 31 10 chr6 2540512 2540610 -186738944 - L2 LINE L2 -201 3071 2972 300 53 0 0 chr6 2540826 2540864 -186738690 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 172 0 115 chr6 2541012 2541099 -186738455 - Tigger5 DNA MER2_type 0 2323 2247 277 129 233 5 chr6 2541100 2541214 -186738340 - Tigger5 DNA MER2_type -2130 193 1 41 48 0 0 chr6 2541598 2541660 -186737894 + AT_rich Low_complexity Low_complexity 1 62 0 801 173 0 8 chr6 2541664 2541797 -186737757 + AluJo/FLAM SINE Alu 2 133 -179 1364 179 3 70 chr6 2541799 2541893 -186737661 + AluJo SINE Alu 1 100 -212 2042 152 123 5 chr6 2541893 2542274 -186737280 - MSTA LTR MaLR 0 428 3 1364 179 3 70 chr6 2542274 2542480 -186737074 + AluJo SINE Alu 100 281 -31 1532 159 9 83 chr6 2542961 2543288 -186736266 - AluJo SINE Alu -9 303 1 1696 102 9 0 chr6 2543859 2544085 -186735469 - AluSc SINE Alu -2 307 80 713 140 0 129 chr6 2544348 2544383 -186735171 - L1MB3 LINE L1 -15 6168 6130 880 204 0 6 chr6 2544383 2544540 -186735014 - FRAM SINE Alu -9 157 2 713 140 0 129 chr6 2544540 2544682 -186734872 - L1MB3 LINE L1 -53 6130 6014 354 243 32 32 chr6 2546206 2546334 -186733220 - MIR SINE MIR -55 153 43 225 235 0 42 chr6 2547448 2547614 -186731940 + C-rich Low_complexity Low_complexity 3 161 0 698 206 52 123 chr6 2548293 2548341 -186731213 + L1ME2 LINE L1 5831 5881 -283 840 135 38 0 chr6 2548341 2548474 -186731080 + L1MA2 LINE L1 6167 6304 0 698 206 52 123 chr6 2548474 2548774 -186730780 + L1ME2 LINE L1 5881 6154 -10 403 273 22 43 chr6 2549418 2549557 -186729997 + MLT1J LTR MaLR 226 361 -150 245 216 80 23 chr6 2549586 2549674 -186729880 + MLT1L LTR MaLR 521 613 -2 2421 71 0 3 chr6 2549902 2550199 -186729355 - AluY SINE Alu -15 296 1 531 153 0 0 chr6 2551843 2551928 -186727626 + FLAM SINE Alu 40 124 -19 611 174 0 0 chr6 2555374 2555483 -186724071 - L1MA9 LINE L1 0 6312 6204 2405 87 3 0 chr6 2555880 2556178 -186723376 - AluSp SINE Alu -14 299 1 417 262 72 51 chr6 2557331 2557568 -186721986 + L1M4 LINE L1 3735 3976 -2170 269 324 22 0 chr6 2557585 2557724 -186721830 + L1M4 LINE L1 4060 4201 -1945 1047 189 0 0 chr6 2557858 2558033 -186721521 + FAM SINE Alu 1 175 0 277 269 9 56 chr6 2558482 2558590 -186720964 - LTR33 LTR ERVL -418 103 1 23 33 0 0 chr6 2558820 2558850 -186720704 + AT_rich Low_complexity Low_complexity 1 30 0 1062 185 30 5 chr6 2559128 2559328 -186720226 + MER58B DNA MER1_type 129 333 -8 313 263 23 83 chr6 2560815 2560948 -186718606 - MIR SINE MIR -80 182 58 630 269 42 0 chr6 2562363 2562530 -186717024 - MIR SINE MIR -48 214 41 2166 115 0 13 chr6 2562838 2563142 -186716412 + AluSx SINE Alu 1 300 -12 227 350 10 19 chr6 2564835 2564938 -186714616 - MIR SINE MIR -156 106 5 476 229 122 64 chr6 2565196 2565523 -186714031 + L1ME4a LINE L1 5770 6115 -6 836 287 130 5 chr6 2565858 2566266 -186713288 + L2 LINE L2 1882 2340 -974 318 50 0 0 chr6 2566272 2566312 -186713242 + (CA)n Simple_repeat Simple_repeat 1 40 0 370 115 0 0 chr6 2566325 2566377 -186713177 + MER58B DNA MER1_type 278 329 -12 2431 271 184 20 chr6 2566542 2568067 -186711487 - L2 LINE L2 0 3313 1530 254 208 292 10 chr6 2568067 2568163 -186711391 + MER34 LTR ERV1 1 123 -419 278 146 110 98 chr6 2568235 2568317 -186711237 + MER39 LTR ERV1 380 462 -245 1682 113 4 0 chr6 2568317 2568546 -186711008 + AluSg/x SINE Alu 66 295 -15 919 177 17 17 chr6 2568616 2568797 -186710757 - L1MB3 LINE L1 0 6183 6003 491 224 26 0 chr6 2569929 2570045 -186709509 - MIR SINE MIR 0 262 144 1309 187 85 40 chr6 2570076 2570402 -186709152 + L1MB7 LINE L1 5833 6174 -10 1131 256 155 5 chr6 2570825 2571250 -186708304 + LTR50 LTR ERVL 31 519 -276 1722 175 75 24 chr6 2571270 2571642 -186707912 + MLT1C LTR MaLR 3 393 -74 890 132 14 7 chr6 2571678 2571822 -186707732 - L1MA9 LINE L1 0 6312 6168 324 0 0 0 chr6 2571822 2571858 -186707696 + (TG)n Simple_repeat Simple_repeat 2 37 0 799 155 20 37 chr6 2571972 2572168 -186707386 + L1M1 LINE L1 5218 5418 -766 279 109 0 0 chr6 2572183 2572229 -186707325 + L1M1 LINE L1 5388 5433 -867 374 280 98 8 chr6 2572270 2572402 -186707152 - MIR SINE MIR -118 144 1 823 303 0 5 chr6 2572569 2572787 -186706767 - LTR16B LTR ERVL -214 250 34 1136 189 78 66 chr6 2572927 2573347 -186706207 + MLT2B1 LTR ERVL 1 414 0 554 311 51 26 chr6 2573687 2574043 -186705511 - HERV16 LTR ERVL -619 4563 4010 801 273 104 30 chr6 2574356 2575078 -186704476 - HERV16 LTR ERVL -1347 3649 3135 1331 298 74 32 chr6 2575165 2575729 -186703825 - HERV16 LTR ERVL -2059 2937 2417 239 333 11 0 chr6 2576743 2576833 -186702721 - MIR3 SINE MIR -3 205 115 278 138 108 0 chr6 2577053 2577118 -186702436 + MIR3 SINE MIR 135 206 -2 1818 255 82 41 chr6 2577624 2577946 -186701608 + L1MC4a LINE L1 5281 5588 -2220 2317 86 3 7 chr6 2577946 2578248 -186701306 + AluY SINE Alu 1 301 -10 1818 255 82 41 chr6 2578248 2578646 -186700908 + L1MC4a LINE L1 5588 6044 -1764 2030 134 82 26 chr6 2578646 2578997 -186700557 - L1PA16 LINE L1 -8 6158 5783 2101 150 0 0 chr6 2578997 2579304 -186700250 - AluSx SINE Alu -5 307 1 2030 134 82 26 chr6 2579304 2579332 -186700222 - L1PA16 LINE L1 -383 5783 5758 1818 255 82 41 chr6 2579332 2579460 -186700094 + L1MC4a LINE L1 6044 6165 -1643 489 237 183 6 chr6 2579755 2579924 -186699630 + L2 LINE L2 2611 2809 -505 343 239 186 9 chr6 2579960 2580073 -186699481 + LTR41 LTR ERVL 30 162 -611 203 357 0 0 chr6 2580468 2580538 -186699016 - L3 LINE CR1 -1302 275 206 335 312 88 58 chr6 2582000 2582398 -186697156 + L1M4 LINE L1 2431 2853 -3293 2272 124 0 0 chr6 2582398 2582704 -186696850 + AluSx SINE Alu 1 306 -6 335 312 88 58 chr6 2582704 2582875 -186696679 + L1M4 LINE L1 2853 3017 -3129 333 205 219 53 chr6 2583130 2583281 -186696273 + MER5A DNA MER1_type 14 189 0 2183 111 0 0 chr6 2583773 2584061 -186695493 + AluSx SINE Alu 5 292 -20 187 347 32 11 chr6 2584243 2584338 -186695216 + L2 LINE L2 3208 3304 -9 685 211 0 0 chr6 2584780 2584921 -186694633 - FLAM_A SINE Alu 0 144 4 1104 136 65 5 chr6 2585085 2585269 -186694285 - AluSg/x SINE Alu -4 306 112 7213 216 50 27 chr6 2585370 2588073 -186691481 - L1MDa LINE L1 -2710 3830 719 2454 83 3 0 chr6 2588073 2588375 -186691179 - AluSp SINE Alu -10 303 1 7213 216 50 27 chr6 2588375 2589094 -186690460 - L1MDa LINE L1 -5821 719 18 341 215 87 132 chr6 2589321 2589586 -186689968 - L1ME4a LINE L1 -246 5875 5623 984 169 7 0 chr6 2589816 2589970 -186689584 - FRAM SINE Alu -25 151 1 736 11 21 0 chr6 2590120 2590213 -186689341 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1189 208 186 12 chr6 2590717 2591131 -186688423 - LTR54B LTR ERV1 -10 488 3 194 241 181 0 chr6 2591906 2592022 -186687532 + L2 LINE L2 2251 2387 -927 505 287 5 37 chr6 2592722 2592910 -186686644 + MIR SINE MIR 78 259 -3 385 145 0 29 chr6 2594508 2594577 -186684977 - Tigger2 DNA MER2_type -1518 1200 1134 4713 129 93 13 chr6 2594601 2595354 -186684200 - L1MA5A LINE L1 -3 6294 5464 255 114 0 0 chr6 2595354 2595398 -186684156 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4713 129 93 13 chr6 2595398 2595497 -186684057 - L1MA5A LINE L1 -833 5464 5374 * 15846 192 57 10 chr6 2595491 2595872 -186683682 - L1PB1 LINE L1 -4 6863 6502 240 86 0 0 chr6 2595872 2595907 -186683647 + (CA)n Simple_repeat Simple_repeat 2 36 0 15846 192 57 10 chr6 2595907 2597284 -186682270 - L1PB1 LINE L1 -365 6502 5192 189 0 0 0 chr6 2597284 2597305 -186682249 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 15846 192 57 10 chr6 2597305 2602095 -186677459 - L1PB1 LINE L1 -1675 5192 6 2171 184 38 0 chr6 2602103 2602549 -186677005 - L1MA5A LINE L1 -752 5394 4932 30 0 0 0 chr6 2603474 2603504 -186676050 + AT_rich Low_complexity Low_complexity 1 30 0 340 257 23 17 chr6 2603572 2603747 -186675807 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 683 271 33 38 chr6 2603762 2604002 -186675552 + LTR16A LTR ERVL 54 292 -158 1502 321 78 10 chr6 2604125 2605416 -186674138 + HERV16 LTR ERVL 1 1421 -3575 2387 295 57 25 chr6 2605518 2605633 -186673921 + HERV16 LTR ERVL 1613 1723 -3781 2051 140 0 31 chr6 2605633 2605954 -186673600 + AluJo SINE Alu 1 311 -1 2249 111 0 0 chr6 2605956 2606245 -186673309 + AluSx SINE Alu 3 291 -21 2387 295 57 25 chr6 2606245 2607448 -186672106 + HERV16 LTR ERVL 1723 3008 -2496 1017 217 74 106 chr6 2607461 2607973 -186671581 - MLT1D LTR MaLR -1 504 5 397 309 116 52 chr6 2608039 2608618 -186670936 + HERV16 LTR ERVL 3163 3778 -1986 826 186 96 0 chr6 2608836 2609024 -186670530 - MER20 DNA MER1_type -13 206 1 538 193 88 64 chr6 2609422 2609500 -186670054 - MER45A DNA AcHobo -1403 178 103 2339 104 0 0 chr6 2609500 2609797 -186669757 + AluSx SINE Alu 11 307 -5 538 193 88 64 chr6 2609797 2609889 -186669665 - MER45A DNA AcHobo -1478 103 4 211 270 149 0 chr6 2610438 2610512 -186669042 + MIR SINE MIR 32 116 -92 396 0 0 0 chr6 2610699 2610743 -186668811 + (TG)n Simple_repeat Simple_repeat 1 44 0 1752 157 77 65 chr6 2611501 2611546 -186668008 - MLT2D LTR ERVL -3 411 368 198 0 0 0 chr6 2611546 2611568 -186667986 + (TC)n Simple_repeat Simple_repeat 2 23 0 1752 157 77 65 chr6 2611568 2611924 -186667630 - MLT2D LTR ERVL -46 368 5 398 212 179 7 chr6 2612302 2612453 -186667101 + MLT1I LTR MaLR 2 178 -231 1813 189 34 11 chr6 2612817 2613172 -186666382 + MLT1A1 LTR MaLR 1 363 -2 369 317 87 6 chr6 2613673 2613856 -186665698 + L1MC2 LINE L1 3917 4114 -2032 2284 113 0 0 chr6 2614176 2614478 -186665076 - AluSx SINE Alu -10 302 1 245 287 108 6 chr6 2614893 2615050 -186664504 + L1P LINE L1 4875 5047 -1099 840 143 0 0 chr6 2615722 2615855 -186663699 - AluSg/x SINE Alu -1 309 177 183 268 28 0 chr6 2615855 2615926 -186663628 - L2 LINE L2 -45 3227 3155 2591 50 0 0 chr6 2616082 2616382 -186663172 + AluY SINE Alu 1 300 -11 941 122 11 17 chr6 2617016 2617197 -186662357 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 306 206 0 37 chr6 2617240 2617347 -186662207 + GA-rich Low_complexity Low_complexity 2 104 0 696 296 31 57 chr6 2619706 2619939 -186659615 + L1MC2 LINE L1 5309 5535 -637 2149 103 0 0 chr6 2619939 2620212 -186659342 + AluSc SINE Alu 30 302 -7 696 296 31 57 chr6 2620212 2620338 -186659216 + L1MC2 LINE L1 5535 5663 -509 314 246 27 27 chr6 2620364 2620474 -186659080 - MLT1F1 LTR MaLR -434 133 24 673 156 14 7 chr6 2620474 2620615 -186658939 - L1MC3 LINE L1 -700 7085 6944 227 277 69 30 chr6 2620754 2620855 -186658699 - L2 LINE L2 -20 3293 3189 6289 123 66 7 chr6 2622057 2623142 -186656412 - L1MC1 LINE L1 -9 6324 5175 523 293 116 13 chr6 2623779 2623939 -186655615 - MIR SINE MIR -5 257 64 1964 151 0 23 chr6 2623939 2624244 -186655310 - AluJo SINE Alu -14 298 1 523 293 116 13 chr6 2624244 2624315 -186655239 - MIR SINE MIR -198 64 2 500 264 24 0 chr6 2624315 2624437 -186655117 + MIR SINE MIR 47 171 -91 384 161 0 62 chr6 2624586 2624667 -186654887 - MLT1D LTR MaLR 0 505 430 620 65 0 0 chr6 2624667 2624744 -186654810 - L1P2 LINE L1 -501 5653 5577 3189 42 8 0 chr6 2624744 2625125 -186654429 + L1PA7 LINE L1 5759 6143 -11 2003 230 11 45 chr6 2625153 2625622 -186653932 - MLT1D LTR MaLR -52 453 1 5099 110 7 1 chr6 2626068 2626798 -186652756 - L1PA14 LINE L1 -65 6096 5363 374 312 16 8 chr6 2627290 2627415 -186652139 - MIR3 SINE MIR -23 185 60 181 286 13 26 chr6 2627941 2628018 -186651536 + L2 LINE L2 3016 3091 -181 2318 107 3 0 chr6 2628030 2628329 -186651225 - AluSx SINE Alu -12 300 1 1948 168 16 45 chr6 2628468 2628848 -186650706 + MSTB LTR MaLR 58 426 0 335 277 188 20 chr6 2629355 2629557 -186649997 + MIR SINE MIR 17 252 -10 2178 180 31 5 chr6 2629824 2630241 -186649313 + L1MC2 LINE L1 5854 6281 -63 321 260 13 0 chr6 2630249 2630326 -186649228 - MLT1H1 LTR MaLR -468 87 10 186 133 0 0 chr6 2631600 2631630 -186647924 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1415 197 93 54 chr6 2632725 2633167 -186646387 + MLT1E3 LTR MaLR 104 562 -62 700 262 11 11 chr6 2633170 2633392 -186646162 + L1PB4 LINE L1 5950 6171 0 384 184 0 71 chr6 2633399 2633497 -186646057 + MLT1E LTR MaLR 503 593 0 711 135 6 140 chr6 2633821 2633910 -186645644 - MER96B DNA MER1_type? -4 413 314 1067 141 11 6 chr6 2633910 2634087 -186645467 - L1MB3 LINE L1 -1 6182 6005 711 135 6 140 chr6 2634087 2634108 -186645446 - MER96B DNA MER1_type? -103 314 292 2211 195 39 9 chr6 2634108 2634569 -186644985 - L1MC1 LINE L1 -8 6325 5851 711 135 6 140 chr6 2634569 2634635 -186644919 - MER96B DNA MER1_type? -125 292 260 183 80 0 0 chr6 2637633 2637658 -186641896 + (T)n Simple_repeat Simple_repeat 1 25 0 601 155 26 0 chr6 2639118 2639234 -186640320 - L1MB3 LINE L1 -1 6182 6064 946 178 53 14 chr6 2640209 2640417 -186639137 + MER20 DNA MER1_type 1 216 -3 2310 108 0 13 chr6 2640946 2641253 -186638301 - AluSx SINE Alu -9 303 1 280 288 14 0 chr6 2641410 2641483 -186638071 + MER112 DNA MER1_type 179 252 -8 1640 196 46 0 chr6 2641534 2641881 -186637673 + MLT2D LTR ERVL 1 363 -51 411 163 150 94 chr6 2641969 2642129 -186637425 + MLT1C LTR MaLR 1 169 -298 350 223 122 21 chr6 2642409 2642578 -186636976 + MLT1I LTR MaLR 266 409 0 351 301 68 40 chr6 2643950 2644126 -186635428 + MIR SINE MIR 36 216 -46 228 262 117 55 chr6 2645631 2645776 -186633778 + MIR SINE MIR 33 186 -76 2145 73 0 18 chr6 2647433 2647705 -186631849 - AluSq SINE Alu -13 300 34 2810 218 64 13 chr6 2648248 2648949 -186630605 - L1MB3 LINE L1 -4 6179 5443 440 314 5 19 chr6 2649248 2649455 -186630099 + SST1 Satellite centromeric 1349 1552 -11 369 75 0 0 chr6 2649481 2649534 -186630020 + (TG)n Simple_repeat Simple_repeat 1 53 0 2302 107 0 0 chr6 2649700 2649991 -186629563 + AluSc SINE Alu 1 291 -18 1006 280 40 26 chr6 2650530 2650984 -186628570 + SST1 Satellite centromeric 1 460 -1103 672 316 51 11 chr6 2651043 2651417 -186628137 + SST1 Satellite centromeric 1161 1549 -14 303 130 0 0 chr6 2651449 2651503 -186628051 + (TG)n Simple_repeat Simple_repeat 1 54 0 258 221 16 123 chr6 2652835 2652957 -186626597 + MER5B DNA MER1_type 1 109 -69 343 266 12 0 chr6 2653428 2653601 -186625953 + (CA)n Simple_repeat Simple_repeat 2 176 0 191 250 105 0 chr6 2654629 2654705 -186624849 + MIR SINE MIR 94 177 -85 1783 172 14 0 chr6 2654726 2655023 -186624531 + AluJo SINE Alu 1 301 -11 2508 222 94 43 chr6 2655061 2655813 -186623741 + L1ME1 LINE L1 5371 6161 -5 608 323 66 10 chr6 2656524 2656812 -186622742 - LTR16C LTR ERVL -8 483 180 632 170 12 12 chr6 2658293 2658464 -186621090 + (TG)n Simple_repeat Simple_repeat 2 172 0 275 237 0 22 chr6 2658479 2658614 -186620940 + (TG)n Simple_repeat Simple_repeat 2 133 0 341 227 0 21 chr6 2658636 2658733 -186620821 + (TG)n Simple_repeat Simple_repeat 2 96 0 271 327 52 47 chr6 2659071 2659282 -186620272 + MIR SINE MIR 50 261 -1 6533 244 60 32 chr6 2659620 2661723 -186617831 + L1ME1 LINE L1 2980 5200 -966 2052 124 0 3 chr6 2661723 2662032 -186617522 + AluSx SINE Alu 1 308 0 6533 244 60 32 chr6 2662032 2663023 -186616531 + L1ME1 LINE L1 5200 6162 -4 2170 110 7 10 chr6 2663164 2663464 -186616090 + AluSg SINE Alu 1 299 -11 479 191 167 12 chr6 2663464 2663632 -186615922 + MER5C DNA MER1_type 131 324 0 5780 228 59 43 chr6 2663753 2664959 -186614595 + L1M4 LINE L1 14 1200 -5444 2294 60 6 73 chr6 2664959 2665273 -186614281 + AluY SINE Alu 1 293 -18 5780 228 59 43 chr6 2665273 2666362 -186613192 + L1M4 LINE L1 1200 2271 -4373 2318 119 0 0 chr6 2666362 2666665 -186612889 + AluSx SINE Alu 1 303 -9 5780 228 59 43 chr6 2666665 2667671 -186611883 + L1M4 LINE L1 2271 3515 -3129 408 366 40 13 chr6 2667683 2668131 -186611423 - MARNA DNA Mariner -75 511 52 26 30 0 0 chr6 2669201 2669234 -186610320 + AT_rich Low_complexity Low_complexity 1 33 0 271 325 25 0 chr6 2669997 2670117 -186609437 + MLT1-int LTR MaLR 21 143 -1228 583 285 27 16 chr6 2670152 2670408 -186609146 + MLT1-int LTR MaLR 292 550 -821 278 338 73 7 chr6 2670636 2670787 -186608767 + MLT1-int LTR MaLR 692 852 -519 1233 214 126 23 chr6 2671025 2671334 -186608220 + MLT1F LTR MaLR 13 353 -189 24 32 0 0 chr6 2672510 2672541 -186607013 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 59 0 chr6 2672613 2672664 -186606890 + (TAA)n Simple_repeat Simple_repeat 2 55 0 344 231 214 0 chr6 2672835 2672952 -186606602 + MER5A DNA MER1_type 41 182 -7 374 312 139 5 chr6 2672965 2673167 -186606387 + MIR SINE MIR 16 244 -18 1922 112 45 159 chr6 2675103 2675586 -186603968 + MSTA LTR MaLR 1 428 0 230 0 33 0 chr6 2677896 2677926 -186601628 + (TG)n Simple_repeat Simple_repeat 2 32 0 1721 81 14 0 chr6 2678309 2678532 -186601022 + AluSc SINE Alu 76 301 -8 21 36 0 0 chr6 2679608 2679636 -186599918 + AT_rich Low_complexity Low_complexity 1 28 0 472 97 14 0 chr6 2680094 2680166 -186599388 - L1PA16 LINE L1 0 6166 6094 183 42 0 0 chr6 2680736 2680760 -186598794 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 151 10 10 chr6 2680772 2681084 -186598470 + AluJo SINE Alu 1 312 0 2309 91 0 0 chr6 2682068 2682379 -186597175 + AluSx SINE Alu 1 311 0 184 313 23 70 chr6 2682797 2682925 -186596629 + MIR SINE MIR 65 186 -76 253 279 96 0 chr6 2684823 2684927 -186594627 + MIR SINE MIR 111 224 -38 22 56 0 0 chr6 2684962 2684998 -186594556 + AT_rich Low_complexity Low_complexity 1 36 0 261 353 116 27 chr6 2685727 2686166 -186593388 - L2 LINE L2 -649 2665 2188 2032 135 3 3 chr6 2686576 2686864 -186592690 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr6 2687433 2687457 -186592097 + AT_rich Low_complexity Low_complexity 1 24 0 2259 119 0 3 chr6 2687795 2688105 -186591449 + AluSg SINE Alu 1 309 -1 197 236 100 70 chr6 2688684 2688858 -186590696 + MIR SINE MIR 29 210 -52 280 325 145 0 chr6 2689159 2689276 -186590278 + L2 LINE L2 3134 3267 -5 195 339 167 11 chr6 2689667 2689853 -186589701 + MIR SINE MIR 43 257 -5 240 211 42 28 chr6 2689888 2689959 -186589595 - MIR3 SINE MIR -23 185 114 2358 69 24 0 chr6 2690696 2690986 -186588568 - AluSc SINE Alu -12 297 1 271 218 56 42 chr6 2693544 2693686 -186585868 - L1ME4a LINE L1 -3 6118 5975 387 0 0 0 chr6 2695376 2695419 -186584135 + (TG)n Simple_repeat Simple_repeat 2 44 0 2144 108 7 0 chr6 2695419 2695702 -186583852 - AluSx SINE Alu -27 285 1 3011 159 42 2 chr6 2695904 2696431 -186583123 - MER44D DNA MER2_type 0 605 3 1256 218 73 30 chr6 2696514 2696844 -186582710 - MER2 DNA MER2_type 0 344 1 539 219 19 129 chr6 2697699 2697773 -186581781 + MER5A DNA MER1_type 1 82 -107 2183 97 26 23 chr6 2697773 2698082 -186581472 + AluSg SINE Alu 1 310 0 539 219 19 129 chr6 2698082 2698217 -186581337 + MER5A DNA MER1_type 82 187 -2 385 282 33 6 chr6 2698704 2698870 -186580684 + ERVL LTR ERVL 2379 2553 -2934 682 304 53 30 chr6 2699083 2699386 -186580168 + ERVL LTR ERVL 2805 3114 -2540 2468 87 3 0 chr6 2700032 2700343 -186579211 - AluSx SINE Alu 0 312 1 221 300 0 0 chr6 2701791 2701851 -186577703 - L2 LINE L2 -3 3310 3251 2581 42 3 7 chr6 2702808 2703114 -186576440 - AluY SINE Alu -6 305 1 896 182 67 34 chr6 2704887 2705096 -186574458 - MER20 DNA MER1_type -2 217 2 2271 109 0 3 chr6 2705741 2706043 -186573511 - AluSq SINE Alu -12 301 1 192 246 35 0 chr6 2706118 2706175 -186573379 + L3 LINE CR1 667 725 -852 970 88 0 67 chr6 2706476 2706669 -186572885 + (TGG)n Simple_repeat Simple_repeat 1 180 0 681 177 0 0 chr6 2706783 2706930 -186572624 + (TGG)n Simple_repeat Simple_repeat 1 147 0 541 253 164 9 chr6 2706930 2707155 -186572399 - MIR SINE MIR -2 260 1 244 323 31 0 chr6 2708476 2708572 -186570982 + Charlie7 DNA MER1_type 5 103 -2509 1355 201 118 54 chr6 2708576 2708925 -186570629 + MLT1A1 LTR MaLR 4 365 0 21 36 0 0 chr6 2709006 2709034 -186570520 + AT_rich Low_complexity Low_complexity 1 28 0 2120 114 4 0 chr6 2709038 2709353 -186570201 + AluSg SINE Alu 1 316 0 290 200 111 11 chr6 2709370 2709460 -186570094 + Charlie7 DNA MER1_type 2514 2612 0 22 35 0 0 chr6 2711466 2711495 -186568059 + AT_rich Low_complexity Low_complexity 1 29 0 2256 101 0 25 chr6 2711538 2711855 -186567699 - AluSg1 SINE Alu 0 309 1 346 261 23 46 chr6 2712525 2712655 -186566899 - MER5B DNA MER1_type -30 148 22 295 272 154 49 chr6 2713961 2714123 -186565431 + MER5A DNA MER1_type 11 189 0 1491 177 12 50 chr6 2714733 2715055 -186564499 + L1MA7 LINE L1 5981 6290 -1 27 49 0 0 chr6 2715549 2715590 -186563964 + AT_rich Low_complexity Low_complexity 1 41 0 366 298 32 16 chr6 2715737 2715861 -186563693 - MER5A DNA MER1_type -57 132 7 2367 70 0 0 chr6 2715921 2716208 -186563346 - AluSc SINE Alu -3 306 20 201 256 0 0 chr6 2717912 2717955 -186561599 + L3b LINE CR1 1289 1331 -252 906 150 0 6 chr6 2718638 2718798 -186560756 + L1MA10 LINE L1 6169 6327 -7 22 0 0 0 chr6 2720368 2720390 -186559164 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr6 2722207 2722262 -186557292 + AT_rich Low_complexity Low_complexity 1 55 0 2822 145 43 27 chr6 2722545 2723034 -186556520 + LOR1a LTR ERV1 1 497 0 383 296 173 14 chr6 2723410 2723630 -186555924 - L3 LINE CR1 -991 586 332 348 287 75 37 chr6 2725137 2725325 -186554229 + MIR SINE MIR 18 212 -50 2217 108 3 13 chr6 2725349 2725663 -186553891 + AluSp SINE Alu 3 313 0 1024 191 32 0 chr6 2726186 2726375 -186553179 + L1MB3 LINE L1 5418 5612 -559 354 169 56 134 chr6 2726421 2726563 -186552991 + MER41A LTR ERV1 174 304 -250 * 948 158 161 110 chr6 2726539 2726831 -186552723 + MER66A LTR ERV1 171 477 -1 3265 124 41 30 chr6 2726831 2727241 -186552313 + L1MB3 LINE L1 5607 6026 -157 2171 110 17 0 chr6 2727241 2727533 -186552021 + AluSp SINE Alu 1 297 -16 3265 124 41 30 chr6 2727533 2727686 -186551868 + L1MB3 LINE L1 6026 6176 -7 849 224 47 0 chr6 2728955 2729147 -186550407 + MIR SINE MIR 47 247 -15 256 276 90 35 chr6 2729220 2729365 -186550189 - L2 LINE L2 -210 3062 2910 353 293 102 0 chr6 2729894 2730051 -186549503 - MIR SINE MIR -70 192 20 2429 91 7 0 chr6 2730157 2730466 -186549088 + AluSp SINE Alu 1 311 -2 234 203 17 17 chr6 2730589 2730648 -186548906 + MLT1L LTR MaLR 11 69 -546 310 274 85 9 chr6 2730752 2730858 -186548696 + MLT1J LTR MaLR 224 337 -174 1123 101 0 0 chr6 2732114 2732253 -186547301 + AluSq/x SINE Alu 1 139 -174 380 250 125 0 chr6 2732253 2732349 -186547205 - MER5B DNA MER1_type -70 108 1 2432 71 0 3 chr6 2732381 2732678 -186546876 + AluSc SINE Alu 1 296 -13 1396 225 84 28 chr6 2732680 2732766 -186546788 + HAL1 LINE L1 887 967 -1540 533 114 13 0 chr6 2732766 2732845 -186546709 - MADE1 DNA Mariner 0 80 1 1396 225 84 28 chr6 2732845 2733139 -186546415 + HAL1 LINE L1 967 1305 -1202 2250 103 0 0 chr6 2733139 2733451 -186546103 + AluSg SINE Alu 1 312 0 1396 225 84 28 chr6 2733451 2733570 -186545984 + HAL1 LINE L1 1305 1416 -1091 481 216 22 36 chr6 2733998 2734137 -186545417 + HAL1 LINE L1 1405 1541 -966 2067 253 50 43 chr6 2734143 2734771 -186544783 + HAL1 LINE L1 1597 2234 -273 396 0 0 0 chr6 2734771 2734815 -186544739 + (TG)n Simple_repeat Simple_repeat 2 45 0 2067 253 50 43 chr6 2734815 2735091 -186544463 + HAL1 LINE L1 2234 2507 0 1872 159 3 7 chr6 2735270 2735571 -186543983 + AluJb SINE Alu 3 302 -10 243 0 0 0 chr6 2736118 2736145 -186543409 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2193 111 0 3 chr6 2736148 2736436 -186543118 - AluSx SINE Alu -25 287 1 2018 110 0 0 chr6 2737160 2737424 -186542130 + AluSx SINE Alu 34 297 -15 1635 186 0 54 chr6 2737434 2737751 -186541803 + AluJo SINE Alu 1 300 -12 905 134 12 0 chr6 2737760 2737931 -186541623 + GA-rich Low_complexity Low_complexity 4 176 0 2564 59 3 0 chr6 2738864 2739168 -186540386 - AluSq SINE Alu -6 307 3 2354 70 0 3 chr6 2739941 2740226 -186539328 + AluSc SINE Alu 17 300 -9 422 269 39 0 chr6 2740268 2740398 -186539156 - MIR SINE MIR -70 192 58 240 338 84 38 chr6 2743749 2743962 -186535592 + L2 LINE L2 2985 3207 -65 181 303 66 25 chr6 2744475 2744597 -186534957 - MIR SINE MIR -5 257 131 229 297 43 29 chr6 2746048 2746186 -186533368 - MER5A DNA MER1_type -24 165 26 240 240 30 0 chr6 2746858 2746958 -186532596 + (TA)n Simple_repeat Simple_repeat 2 104 0 287 218 69 20 chr6 2747136 2747237 -186532317 - MER5A DNA MER1_type -80 109 4 429 294 69 25 chr6 2748149 2748309 -186531245 - MIR SINE MIR -70 192 26 1194 107 0 0 chr6 2748526 2748685 -186530869 - AluSg/x SINE Alu -25 285 127 2278 76 0 0 chr6 2749309 2749597 -186529957 + AluSc SINE Alu 19 306 -3 226 283 133 26 chr6 2750246 2750359 -186529195 - MIR SINE MIR -97 165 41 1037 157 6 0 chr6 2751078 2751244 -186528310 + L1MC1 LINE L1 6055 6221 -112 276 299 11 0 chr6 2751343 2751430 -186528124 + MIR SINE MIR 78 165 -97 424 143 0 0 chr6 2751431 2751494 -186528060 + AluS SINE Alu 2 64 -245 256 200 210 10 chr6 2752357 2752457 -186527097 + MIR SINE MIR 50 169 -93 266 265 61 41 chr6 2752802 2752949 -186526605 + LTR16C LTR ERVL 332 481 -10 226 229 96 12 chr6 2753365 2753448 -186526106 - MER113 DNA MER1_type? -427 94 5 4738 28 0 0 chr6 2754599 2755139 -186524415 + L1PA3 LINE L1 5615 6154 -1 626 176 71 80 chr6 2755208 2755446 -186524108 + MER106A DNA MER1_type 1 236 0 1869 153 7 7 chr6 2757901 2758208 -186521346 + AluJb SINE Alu 1 307 -5 2340 92 0 49 chr6 2758229 2758555 -186520999 + AluSg SINE Alu 1 310 0 1761 149 3 34 chr6 2759606 2759901 -186519653 - AluJo SINE Alu -14 298 13 211 333 0 12 chr6 2760740 2760821 -186518733 - MIR SINE MIR -8 254 175 1238 174 26 15 chr6 2764454 2764718 -186514836 - L1MC3 LINE L1 0 7785 7519 777 259 117 0 chr6 2764718 2764992 -186514562 - L2 LINE L2 -793 2521 2216 3408 192 57 56 chr6 2765742 2766137 -186513417 + L1MB8 LINE L1 5109 5502 -676 976 111 0 15 chr6 2766137 2766272 -186513282 + FLAM_C SINE Alu 1 133 0 3408 192 57 56 chr6 2766272 2766942 -186512612 + L1MB8 LINE L1 5502 6178 0 550 243 186 0 chr6 2767532 2767709 -186511845 - L1MC4 LINE L1 -36 8006 7797 1163 157 17 0 chr6 2767793 2767994 -186511560 - AluJb SINE Alu 0 307 104 2682 240 101 13 chr6 2767996 2768931 -186510623 - L1MC4 LINE L1 -287 7602 6509 390 289 146 50 chr6 2769601 2769840 -186509714 + L1ME LINE L1 5491 5752 -369 417 264 96 34 chr6 2770141 2770319 -186509235 + MIR SINE MIR 8 196 -66 256 208 58 19 chr6 2770592 2770746 -186508808 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr6 2770769 2770791 -186508763 + AT_rich Low_complexity Low_complexity 1 22 0 387 270 57 28 chr6 2770935 2771183 -186508371 - L1ME3A LINE L1 -205 5965 5711 388 258 110 53 chr6 2771223 2771370 -186508184 - L1ME3A LINE L1 -604 5558 5421 1532 183 48 14 chr6 2771370 2771665 -186507889 - AluJo SINE Alu -7 305 1 388 258 110 53 chr6 2771665 2771781 -186507773 - L1ME3A LINE L1 -741 5421 5280 304 289 21 14 chr6 2771808 2771950 -186507604 - L1ME3A LINE L1 -897 5249 5107 678 145 8 0 chr6 2772297 2772414 -186507140 - MER2 DNA MER2_type -135 210 93 710 107 0 0 chr6 2772422 2772525 -186507029 - MER2 DNA MER2_type -135 210 108 670 238 219 66 chr6 2772538 2772903 -186506651 - MER21B LTR ERV1 -425 438 18 318 322 35 17 chr6 2772923 2773097 -186506457 + L1M4 LINE L1 4248 4424 -1722 531 188 147 12 chr6 2773798 2773979 -186505575 - MIR SINE MIR -21 241 40 1844 129 7 7 chr6 2774172 2774450 -186505104 - AluSc SINE Alu -13 296 19 2855 203 130 32 chr6 2774901 2776090 -186503464 - pTR5 LTR ERV1 -22 1523 6 1924 92 73 7 chr6 2776123 2776395 -186503159 + AluSp SINE Alu 1 290 -23 599 170 30 15 chr6 2776529 2776664 -186502890 + FRAM SINE Alu 1 136 -40 23 33 0 0 chr6 2777441 2777471 -186502083 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 2777844 2777881 -186501673 + GC_rich Low_complexity Low_complexity 1 37 0 23 101 0 0 chr6 2778009 2778088 -186501466 + GC_rich Low_complexity Low_complexity 1 79 0 26 0 0 0 chr6 2778305 2778331 -186501223 + GC_rich Low_complexity Low_complexity 1 26 0 206 263 0 0 chr6 2778355 2778431 -186501123 + G-rich Low_complexity Low_complexity 30 105 0 21 36 0 0 chr6 2778490 2778518 -186501036 + GC_rich Low_complexity Low_complexity 1 28 0 186 319 18 26 chr6 2779417 2779530 -186500024 + L3 LINE CR1 1123 1234 -343 25 31 0 0 chr6 2781664 2781696 -186497858 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 2781721 2781746 -186497808 + AT_rich Low_complexity Low_complexity 1 25 0 1192 142 78 23 chr6 2783804 2784023 -186495531 + MER46A DNA MER2_type 1 231 -5 181 207 17 86 chr6 2784406 2784464 -186495090 + MER5A DNA MER1_type 130 183 -6 333 222 154 8 chr6 2784632 2784749 -186494805 + L2 LINE L2 3139 3272 0 22 0 0 0 chr6 2786400 2786422 -186493132 + AT_rich Low_complexity Low_complexity 1 22 0 1004 211 40 103 chr6 2786540 2786939 -186492615 - MLT1B LTR MaLR -16 374 1 713 269 20 10 chr6 2787181 2787382 -186492172 - MIR SINE MIR -6 256 54 22 80 0 0 chr6 2788251 2788301 -186491253 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr6 2789159 2789191 -186490363 + AT_rich Low_complexity Low_complexity 1 32 0 187 225 0 0 chr6 2790776 2790816 -186488738 - MIR SINE MIR -145 117 78 198 274 60 36 chr6 2790988 2791072 -186488482 + MIR3 SINE MIR 116 201 -7 213 280 11 32 chr6 2793169 2793262 -186486292 - MIR SINE MIR -49 213 123 651 198 142 6 chr6 2794078 2794240 -186485314 - MIR SINE MIR -71 191 8 267 315 36 0 chr6 2798510 2798621 -186480933 - HAL1 LINE L1 -702 1805 1691 661 293 168 19 chr6 2798663 2799080 -186480474 - HAL1 LINE L1 -620 1887 1409 321 143 89 0 chr6 2799083 2799139 -186480415 - HAL1 LINE L1 -1144 1363 1303 2137 98 0 25 chr6 2799140 2799457 -186480097 - AluSx SINE Alu -3 309 1 985 277 126 16 chr6 2799457 2800039 -186479515 - L2 LINE L2 -10 3303 2651 264 356 40 0 chr6 2800064 2800213 -186479341 - HAL1 LINE L1 -1879 628 474 533 287 62 14 chr6 2800299 2800508 -186479046 - HAL1 LINE L1 -2278 229 11 2036 123 0 16 chr6 2800539 2800855 -186478699 - AluSx SINE Alu -1 311 1 2688 29 0 0 chr6 2800887 2801197 -186478357 + AluYb8 SINE Alu 1 310 -8 2058 118 0 0 chr6 2801864 2802152 -186477402 + AluSx SINE Alu 1 288 -24 195 42 0 0 chr6 2802156 2802180 -186477374 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 406 226 96 78 chr6 2802840 2803070 -186476484 - LTR33 LTR ERVL -169 352 119 228 250 0 0 chr6 2803490 2803538 -186476016 + L2 LINE L2 3219 3266 -6 380 215 0 93 chr6 2803785 2803957 -186475597 - L1ME4a LINE L1 -3 6118 5963 309 51 0 0 chr6 2803961 2804000 -186475554 + (TG)n Simple_repeat Simple_repeat 1 39 0 2299 100 0 0 chr6 2804195 2804505 -186475049 - AluSx SINE Alu -2 310 1 465 294 166 5 chr6 2804606 2804817 -186474737 + MIR SINE MIR 15 259 -3 349 347 67 0 chr6 2805130 2805280 -186474274 - MIR SINE MIR 0 262 103 691 208 116 29 chr6 2805350 2805523 -186474031 - MER5A DNA MER1_type 0 189 2 245 219 74 12 chr6 2805867 2805949 -186473605 + MER91 DNA MER1_type 105 196 0 284 187 37 44 chr6 2807061 2807142 -186472412 + MIR3 SINE MIR 101 168 -40 1762 106 0 0 chr6 2807160 2807434 -186472120 + AluSg SINE Alu 46 319 0 226 361 62 0 chr6 2807582 2807679 -186471875 + MIR3 SINE MIR 83 185 -23 326 253 145 24 chr6 2808473 2808639 -186470915 + MER5A DNA MER1_type 1 186 -3 2406 62 0 3 chr6 2808644 2808950 -186470604 + AluY SINE Alu 1 305 -6 761 65 9 0 chr6 2810106 2810214 -186469340 + (TCC)n Simple_repeat Simple_repeat 1 109 0 327 270 73 64 chr6 2810932 2811165 -186468389 + MLT1K LTR MaLR 351 585 -3 2236 107 0 0 chr6 2811330 2811640 -186467914 - AluSx SINE Alu -2 310 1 188 220 119 0 chr6 2811873 2811932 -186467622 + MIR3 SINE MIR 3 68 -140 209 188 21 21 chr6 2812351 2812399 -186467155 - L3b LINE CR1 -8 1575 1528 2627 185 8 4 chr6 2812790 2813260 -186466294 - MER70A LTR ERVL 0 472 1 1819 185 49 3 chr6 2813266 2813762 -186465792 - MER70A-int LTR ERVL 0 5023 4469 28 0 0 0 chr6 2813762 2813790 -186465764 + AT_rich Low_complexity Low_complexity 1 28 0 3494 5 0 0 chr6 2813790 2814173 -186465381 - L1HS LINE L1 -3 6152 5770 14246 176 54 28 chr6 2814176 2815537 -186464017 - MER70A-int LTR ERVL -549 4474 3150 255 216 0 0 chr6 2815537 2815588 -186463966 + MER9 LTR ERVK 461 511 0 14246 176 54 28 chr6 2815588 2816957 -186462597 - MER70A-int LTR ERVL -1873 3150 1621 2271 160 76 10 chr6 2816957 2817251 -186462303 - MER70A-int LTR ERVL -3832 1191 918 1772 192 27 0 chr6 2817251 2817579 -186461975 - MER1B DNA MER1_type 0 337 1 2271 160 76 10 chr6 2817579 2818064 -186461490 - MER70A-int LTR ERVL -4105 918 467 372 22 0 0 chr6 2818064 2818109 -186461445 + (TG)n Simple_repeat Simple_repeat 2 46 0 2271 160 76 10 chr6 2818109 2818294 -186461260 - MER70A-int LTR ERVL -4556 467 1 966 149 19 91 chr6 2818294 2818462 -186461092 - MER70A LTR ERVL 0 472 320 4176 142 23 34 chr6 2818462 2819195 -186460359 + LTR8A LTR ERV1 1 725 -2 966 149 19 91 chr6 2819195 2819234 -186460320 - MER70A LTR ERVL -152 320 280 602 256 30 24 chr6 2819268 2819436 -186460118 + HAL1 LINE L1 539 707 -1800 275 272 25 12 chr6 2819444 2819525 -186460029 + HAL1 LINE L1 745 826 -1681 1099 253 80 26 chr6 2819562 2819949 -186459605 + HAL1 LINE L1 1404 1811 -696 458 216 18 9 chr6 2820106 2820217 -186459337 + HAL1 LINE L1 1690 1801 -706 3242 154 131 37 chr6 2820272 2820411 -186459143 + L1MA9 LINE L1 5483 5608 -704 1794 163 20 3 chr6 2820411 2820717 -186458837 + AluJo SINE Alu 1 311 -1 3242 154 131 37 chr6 2820717 2821331 -186458223 + L1MA9 LINE L1 5608 6307 -5 625 257 151 29 chr6 2821342 2821759 -186457795 + HAL1 LINE L1 1812 2279 -228 929 192 33 23 chr6 2823562 2823776 -186455778 - MER20 DNA MER1_type -3 216 1 234 295 0 0 chr6 2823783 2823844 -186455710 + (TA)n Simple_repeat Simple_repeat 2 62 0 766 208 36 24 chr6 2823859 2824027 -186455527 + MER6B DNA MER2_type 41 210 0 283 279 12 0 chr6 2824028 2824114 -186455440 + (TA)n Simple_repeat Simple_repeat 1 87 0 405 181 0 0 chr6 2824114 2824186 -186455368 + MER116 DNA Mariner 5 76 -4 248 239 136 34 chr6 2824374 2824462 -186455092 + MIR SINE MIR 137 233 -29 2313 103 0 0 chr6 2824704 2825015 -186454539 + AluSx SINE Alu 1 311 -1 749 254 83 8 chr6 2825052 2825304 -186454250 - L1ME1 LINE L1 -5 6161 5891 2210 55 4 0 chr6 2825310 2825583 -186453971 - AluY SINE Alu -10 301 28 274 275 0 0 chr6 2825687 2825756 -186453798 - AluS SINE Alu -231 69 1 2145 176 72 133 chr6 2825759 2826075 -186453479 - L1ME2 LINE L1 -267 5897 5564 854 159 0 0 chr6 2826075 2826207 -186453347 + FLAM_C SINE Alu 2 133 0 2145 176 72 133 chr6 2826207 2826519 -186453035 - L1ME2 LINE L1 -600 5564 5235 1222 183 5 0 chr6 2826519 2826733 -186452821 + L1PB4 LINE L1 5935 6154 -2 2145 176 72 133 chr6 2826733 2827357 -186452197 - L1ME2 LINE L1 -929 5235 4724 760 200 0 0 chr6 2827364 2827489 -186452065 + FLAM_C SINE Alu 3 127 -16 7296 214 46 48 chr6 2827494 2828234 -186451320 - L1ME2 LINE L1 -1414 4732 3993 189 0 0 0 chr6 2828234 2828255 -186451299 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1547 183 4 0 chr6 2828257 2828531 -186451023 - AluJo SINE Alu -26 286 12 7296 214 46 48 chr6 2828531 2830070 -186449484 - L1ME2 LINE L1 -2154 3992 2453 2072 135 0 0 chr6 2831980 2832291 -186447263 + L1PA16 LINE L1 5483 5793 -373 413 137 14 0 chr6 2832291 2832361 -186447193 + L1PA16 LINE L1 6077 6150 -16 565 285 131 0 chr6 2832412 2832626 -186446928 + MIR SINE MIR 20 261 -1 295 206 11 0 chr6 2833317 2833397 -186446157 + L1ME3A LINE L1 6007 6091 -79 2071 126 0 0 chr6 2833519 2833829 -186445725 + AluY SINE Alu 1 310 -1 337 319 120 57 chr6 2834243 2834626 -186444928 - L1M4 LINE L1 -989 5157 4751 608 311 175 10 chr6 2834649 2835260 -186444294 - L1M4 LINE L1 -1448 4698 3987 683 258 36 22 chr6 2835379 2835443 -186444111 + L1ME2 LINE L1 5728 5790 -376 2055 214 0 0 chr6 2835443 2835808 -186443746 + MLT1A1 LTR MaLR 1 365 0 683 258 36 22 chr6 2835808 2835968 -186443586 + L1ME2 LINE L1 5790 5955 -211 381 288 61 0 chr6 2835975 2836107 -186443447 + L1ME2 LINE L1 6015 6154 -10 694 302 202 30 chr6 2836173 2836469 -186443085 + L2 LINE L2 1830 2074 -1240 2357 63 0 13 chr6 2836469 2836770 -186442784 - AluY SINE Alu -14 297 1 694 302 202 30 chr6 2836770 2837260 -186442294 + L2 LINE L2 2074 2751 -563 35 24 0 0 chr6 2837276 2837318 -186442236 + AT_rich Low_complexity Low_complexity 1 42 0 1727 94 0 84 chr6 2837318 2837398 -186442156 + AluSx SINE Alu 50 135 -177 2169 94 0 0 chr6 2837398 2837684 -186441870 + AluY SINE Alu 1 286 -25 1727 94 0 84 chr6 2837684 2837890 -186441664 + AluSx SINE Alu 135 312 0 1175 101 0 0 chr6 2837890 2838049 -186441505 + AluSg/x SINE Alu 134 292 -20 198 255 64 0 chr6 2838812 2838859 -186440695 + MIR SINE MIR 129 178 -84 713 122 0 0 chr6 2839049 2839147 -186440407 + AluJ/FLAM SINE Alu 2 99 -213 1975 122 0 0 chr6 2839166 2839453 -186440101 + AluSx SINE Alu 21 307 -5 24 32 0 0 chr6 2839458 2839489 -186440065 + AT_rich Low_complexity Low_complexity 1 31 0 424 265 59 73 chr6 2839806 2840146 -186439408 - L1M4 LINE L1 -934 5212 4878 244 261 34 67 chr6 2840182 2840301 -186439253 + MER94 DNA DNA 6 120 -14 877 261 124 57 chr6 2840334 2840527 -186439027 - L1M4 LINE L1 -1307 4839 4660 2398 81 0 0 chr6 2840527 2840835 -186438719 + AluSg SINE Alu 1 308 -2 877 261 124 57 chr6 2840835 2840934 -186438620 - L1M4 LINE L1 -1486 4660 4569 1691 133 36 30 chr6 2840934 2841235 -186438319 - AluJo SINE Alu -9 303 1 877 261 124 57 chr6 2841235 2841661 -186437893 - L1M4 LINE L1 -1577 4569 4072 277 301 14 27 chr6 2841672 2841818 -186437736 - L1MDa LINE L1 -3630 2499 2356 380 229 144 65 chr6 2841978 2842284 -186437270 - L1MDa LINE L1 -3809 2320 2031 563 281 124 42 chr6 2842448 2842930 -186436624 - L1MDa LINE L1 -4433 1696 1233 1641 173 3 10 chr6 2842971 2843260 -186436294 + AluJo SINE Alu 2 288 -24 22 35 0 0 chr6 2843260 2843289 -186436265 + AT_rich Low_complexity Low_complexity 1 29 0 710 279 96 100 chr6 2843289 2843891 -186435663 - L1MDa LINE L1 -4949 1170 571 293 297 20 10 chr6 2844318 2844419 -186435135 + MIR SINE MIR 50 151 -57 2253 115 0 0 chr6 2844928 2845240 -186434314 + AluSx SINE Alu 1 312 0 230 136 23 0 chr6 2846646 2846690 -186432864 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 869 170 7 0 chr6 2846701 2846991 -186432563 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 418 211 138 24 chr6 2847187 2847310 -186432244 + MIR SINE MIR 125 261 -1 744 184 0 22 chr6 2847959 2848095 -186431459 + FLAM_A SINE Alu 1 133 0 824 193 0 0 chr6 2849113 2849258 -186430296 + AluJb SINE Alu 138 282 -30 206 32 32 0 chr6 2849262 2849293 -186430261 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2119 111 0 19 chr6 2849666 2849981 -186429573 - AluSx SINE Alu 0 312 4 367 226 0 29 chr6 2850541 2850643 -186428911 - L1MB2 LINE L1 0 6171 6073 419 244 38 53 chr6 2852533 2852664 -186426890 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr6 2853510 2853532 -186426022 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 2853959 2853979 -186425575 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 2854171 2854192 -186425362 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 2854325 2854347 -186425207 + GC_rich Low_complexity Low_complexity 1 22 0 824 196 40 67 chr6 2854691 2854916 -186424638 - MLT1A1 LTR MaLR -146 219 1 7751 203 45 40 chr6 2854916 2856644 -186422910 - MLT1A1-int LTR MaLR 0 1735 1 1365 179 56 88 chr6 2856644 2857018 -186422536 - MLT1A1 LTR MaLR 0 365 4 573 232 149 28 chr6 2857054 2857235 -186422319 + MLT1A1 LTR MaLR 163 365 0 202 80 40 40 chr6 2857717 2857767 -186421787 + T-rich Low_complexity Low_complexity 3 52 0 21 0 0 0 chr6 2857770 2857791 -186421763 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 2857966 2858005 -186421549 + AT_rich Low_complexity Low_complexity 1 39 0 1381 141 4 13 chr6 2858006 2858233 -186421321 + AluJo SINE Alu 87 311 -1 2134 111 6 19 chr6 2858489 2858805 -186420749 - AluSx SINE Alu 0 312 1 556 279 298 11 chr6 2859077 2859453 -186420101 + L2 LINE L2 2830 3313 0 1042 323 91 29 chr6 2859725 2859802 -186419752 + L3 LINE CR1 445 516 -1061 2346 70 3 0 chr6 2859802 2860100 -186419454 + AluSp SINE Alu 1 299 -14 1042 323 91 29 chr6 2860100 2860135 -186419419 + L3 LINE CR1 516 547 -1030 2171 109 0 0 chr6 2860135 2860437 -186419117 + AluSx SINE Alu 2 303 -9 1042 323 91 29 chr6 2860437 2860951 -186418603 + L3 LINE CR1 547 1111 -466 393 328 61 15 chr6 2861049 2861247 -186418307 + MIR SINE MIR 1 207 -55 2039 87 23 33 chr6 2861938 2862228 -186417326 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 2862228 2862250 -186417304 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1817 106 92 3 chr6 2862522 2862804 -186416750 - AluSx SINE Alu -5 307 1 1610 154 0 52 chr6 2862881 2863186 -186416368 - AluJo SINE Alu -14 298 10 502 271 40 20 chr6 2863257 2863408 -186416146 - MER21B LTR ERV1 -612 251 98 456 221 0 0 chr6 2863447 2863524 -186416030 - MER21B LTR ERV1 -769 94 18 1946 101 3 39 chr6 2863524 2863722 -186415832 - AluSq SINE Alu 0 313 140 2015 121 0 13 chr6 2863722 2864036 -186415518 - AluSx SINE Alu -2 310 1 1946 101 3 39 chr6 2864036 2864172 -186415382 - AluSq SINE Alu -173 140 1 208 344 52 31 chr6 2864267 2864363 -186415191 - MIR3 SINE MIR -45 163 66 230 207 8 107 chr6 2865709 2865830 -186413724 + C-rich Low_complexity Low_complexity 5 113 0 404 192 22 82 chr6 2865877 2866059 -186413495 + CT-rich Low_complexity Low_complexity 2 172 0 890 194 29 0 chr6 2866138 2866313 -186413241 - L1MC3 LINE L1 -391 7394 7215 334 113 42 28 chr6 2866323 2866394 -186413160 - L1MC3 LINE L1 -1310 6475 6404 2167 108 0 3 chr6 2868828 2869133 -186410421 - AluSx SINE Alu -8 304 1 219 69 0 0 chr6 2870661 2870690 -186408864 + (CCCCCT)n Simple_repeat Simple_repeat 4 32 0 2048 125 0 0 chr6 2870734 2871031 -186408523 - AluSg SINE Alu -13 297 1 256 308 58 58 chr6 2871261 2871365 -186408189 - L2 LINE L2 -11 3261 3158 207 272 53 88 chr6 2871700 2871814 -186407740 + MIR SINE MIR 92 201 -61 2902 161 28 19 chr6 2871822 2872364 -186407190 + L1MA9 LINE L1 5476 6022 -290 7493 140 75 116 chr6 2872364 2874128 -186405426 + pTR5 LTR ERV1 743 2433 -5 550 235 68 8 chr6 2874173 2874305 -186405249 + AluSg/x SINE Alu 146 285 -25 1201 196 44 18 chr6 2874305 2874500 -186405054 + L1MA9 LINE L1 6031 6236 -76 2016 128 87 16 chr6 2874500 2874867 -186404687 + MSTD LTR MaLR 4 396 0 1201 196 44 18 chr6 2874867 2874946 -186404608 + L1MA9 LINE L1 6236 6312 0 1818 159 26 100 chr6 2875648 2876069 -186403485 - MLT1B LTR MaLR 0 390 1 1655 98 0 21 chr6 2876664 2876900 -186402654 + AluSx SINE Alu 1 231 -81 201 74 0 0 chr6 2876911 2876938 -186402616 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 180 227 15 45 chr6 2877521 2877587 -186401967 + L2 LINE L2 3171 3234 -79 287 181 0 36 chr6 2877672 2877755 -186401799 + C-rich Low_complexity Low_complexity 4 83 0 1709 149 4 4 chr6 2877772 2878048 -186401506 - AluJb SINE Alu -34 278 3 1165 206 124 65 chr6 2878051 2878463 -186401091 + LTR56 LTR ERV1 10 445 0 557 200 30 0 chr6 2878547 2878647 -186400907 + MER21B LTR ERV1 2 104 -759 1850 225 112 34 chr6 2878707 2879235 -186400319 + MER21B LTR ERV1 214 782 -81 645 173 39 0 chr6 2879326 2879430 -186400124 - FLAM_C SINE Alu -34 109 2 430 309 140 40 chr6 2879495 2879867 -186399687 + L1ME4a LINE L1 4981 5389 -757 332 359 38 11 chr6 2879902 2880086 -186399468 + L1ME4a LINE L1 5699 5887 -234 299 268 147 47 chr6 2880220 2880519 -186399035 + L1MC4 LINE L1 7525 7853 -189 878 82 8 0 chr6 2880632 2880754 -186398800 - AluY SINE Alu -19 292 170 296 233 124 32 chr6 2880755 2880976 -186398578 - L1MEc LINE L1 -5226 1721 1356 285 261 11 22 chr6 2881098 2881190 -186398364 - L1MEc LINE L1 -6269 869 779 205 371 114 0 chr6 2881280 2881385 -186398169 - MER5A DNA MER1_type -69 120 4 212 328 33 0 chr6 2881409 2881470 -186398084 + MER5B DNA MER1_type 26 88 -90 5683 188 88 56 chr6 2881499 2883037 -186396517 - pTR5 LTR ERV1 -157 2210 31 243 154 39 58 chr6 2883259 2883311 -186396243 - MER5B DNA MER1_type -127 51 1 234 259 19 0 chr6 2883311 2883363 -186396191 + MIR3 SINE MIR 153 205 -3 30 27 0 0 chr6 2883773 2883810 -186395744 + AT_rich Low_complexity Low_complexity 1 37 0 198 342 0 26 chr6 2883898 2883974 -186395580 - MIR SINE MIR -85 123 50 2071 133 0 0 chr6 2883977 2884286 -186395268 + AluSg SINE Alu 1 309 -1 798 288 125 16 chr6 2884483 2884797 -186394757 - MLT1I LTR MaLR 0 409 61 2220 123 18 47 chr6 2884797 2885178 -186394376 - THE1C LTR MaLR 0 375 6 278 213 16 16 chr6 2885209 2885270 -186394284 - MLT1I LTR MaLR -344 65 5 1773 136 9 28 chr6 2886123 2886440 -186393114 + AluJb SINE Alu 1 311 -1 542 300 106 25 chr6 2886451 2886688 -186392866 - MIR SINE MIR 0 262 7 1764 87 23 4 chr6 2887975 2888240 -186391314 + AluSx SINE Alu 1 270 -42 189 0 0 0 chr6 2888244 2888265 -186391289 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 38 89 0 0 chr6 2888483 2888584 -186390970 + GC_rich Low_complexity Low_complexity 1 101 0 13965 187 35 57 chr6 2889273 2895251 -186384303 + L1P5 LINE L1 6 6067 -800 2272 107 0 0 chr6 2895251 2895561 -186383993 + AluSg SINE Alu 1 310 0 13965 187 35 57 chr6 2895561 2895993 -186383561 + L1P5 LINE L1 6067 6507 -360 313 244 49 0 chr6 2896041 2896123 -186383431 + MLT1J1 LTR MaLR 350 435 -11 539 304 212 23 chr6 2896460 2896931 -186382623 - L2 LINE L2 -930 2384 1825 993 173 37 6 chr6 2897095 2897257 -186382297 - FAM SINE Alu -8 167 1 245 163 38 50 chr6 2897314 2897394 -186382160 + L1MB2 LINE L1 5309 5387 -2421 449 309 69 88 chr6 2897572 2897947 -186381607 - L1ME4a LINE L1 0 6121 5754 203 170 21 0 chr6 2897998 2898045 -186381509 + CT-rich Low_complexity Low_complexity 3 50 0 311 157 100 0 chr6 2898051 2898121 -186381433 + L1MB2 LINE L1 6088 6164 -7 314 312 109 18 chr6 2898152 2898373 -186381181 - L1ME4a LINE L1 -2099 5709 5469 2474 139 43 26 chr6 2898419 2898842 -186380712 - MSTB1 LTR MaLR 0 432 3 486 340 59 86 chr6 2898979 2899470 -186380084 + L1M4 LINE L1 4207 4684 -1462 2143 141 3 3 chr6 2899960 2900266 -186379288 + AluSx SINE Alu 1 306 -6 518 196 9 9 chr6 2900273 2900385 -186379169 + MER50 LTR ERV1 493 604 -130 4116 144 21 32 chr6 2900475 2901251 -186378303 + L1MB5 LINE L1 5408 6174 0 230 323 0 0 chr6 2901720 2901782 -186377772 + L2 LINE L2 3194 3255 -17 2646 35 0 7 chr6 2901809 2902119 -186377435 + AluY SINE Alu 1 308 -3 389 269 0 10 chr6 2903773 2903877 -186375677 - MIR SINE MIR 0 262 160 224 317 48 28 chr6 2903994 2904139 -186375415 - MIR3 SINE MIR -59 149 2 225 0 0 0 chr6 2904501 2904526 -186375028 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 2905019 2905041 -186374513 + AT_rich Low_complexity Low_complexity 1 22 0 589 67 48 0 chr6 2905573 2905677 -186373877 + (TA)n Simple_repeat Simple_repeat 1 109 0 1868 130 66 36 chr6 2907200 2907501 -186372053 - AluSx SINE Alu -2 310 1 225 209 9 19 chr6 2907692 2907797 -186371757 + GA-rich Low_complexity Low_complexity 2 105 0 724 124 133 0 chr6 2908263 2908376 -186371178 + FLAM_C SINE Alu 1 128 -5 457 294 94 85 chr6 2908967 2909302 -186370252 + L1M4 LINE L1 2584 2915 -3231 1888 155 55 0 chr6 2909302 2909593 -186369961 + AluJo SINE Alu 1 307 -5 457 294 94 85 chr6 2909593 2909628 -186369926 + L1M4 LINE L1 2915 2948 -3198 2305 118 0 0 chr6 2909628 2909932 -186369622 + AluSx SINE Alu 1 304 -8 457 294 94 85 chr6 2909932 2910181 -186369373 + L1M4 LINE L1 2948 3223 -2923 1095 134 0 41 chr6 2910352 2910555 -186368999 + AluSg/x SINE Alu 121 316 0 2414 81 10 0 chr6 2910980 2911276 -186368278 + AluY SINE Alu 1 299 -12 243 326 71 0 chr6 2911277 2911418 -186368136 + L1ME4a LINE L1 5970 6120 -1 2292 145 18 43 chr6 2911666 2912108 -186367446 + MER65A LTR ERV1 12 442 -3 396 0 0 0 chr6 2913332 2913376 -186366178 + (CA)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 2913807 2913832 -186365722 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2100 123 16 10 chr6 2914973 2915282 -186364272 - AluSx SINE Alu -1 311 1 615 228 69 0 chr6 2916704 2916849 -186362705 - MER96 DNA MER1_type? -1 174 20 1638 208 1 61 chr6 2916849 2917275 -186362279 - L1MB7 LINE L1 -2 6182 5776 859 258 10 7 chr6 2917274 2917576 -186361978 + L1M4 LINE L1 2903 3205 -2941 * 2252 115 3 0 chr6 2917590 2917885 -186361669 - AluSx SINE Alu -16 296 1 200 321 79 21 chr6 2918820 2918960 -186360594 - L2 LINE L2 0 3272 3125 1132 168 162 70 chr6 2919116 2919431 -186360123 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 2919615 2919717 -186359837 + (TG)n Simple_repeat Simple_repeat 1 100 0 287 251 16 8 chr6 2919738 2919999 -186359555 + (TG)n Simple_repeat Simple_repeat 1 263 0 420 271 0 25 chr6 2920080 2920410 -186359144 + (TG)n Simple_repeat Simple_repeat 1 321 0 270 239 6 12 chr6 2920429 2920592 -186358962 + (TG)n Simple_repeat Simple_repeat 1 162 0 8253 67 1 0 chr6 2921131 2922099 -186357455 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 2922612 2922917 -186356637 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 2923278 2923495 -186356059 - MER20 DNA MER1_type 0 219 4 2460 84 7 3 chr6 2924585 2924893 -186354661 + AluSx SINE Alu 1 309 -3 579 170 54 48 chr6 2925001 2925148 -186354406 + MLT1D LTR MaLR 1 148 -357 1437 60 27 0 chr6 2925486 2925671 -186353883 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 2925965 2926511 -186353043 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 2926557 2926873 -186352681 + MLT1D LTR MaLR 130 505 0 231 355 167 21 chr6 2926979 2927165 -186352389 - MIR SINE MIR -37 225 13 2309 98 7 0 chr6 2927275 2927572 -186351982 - AluSx SINE Alu -13 299 1 2125 144 0 0 chr6 2928052 2928350 -186351204 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 2929706 2929735 -186349819 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 2930050 2930180 -186349374 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 2930901 2931058 -186348496 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 2931058 2931361 -186348193 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 2931361 2931829 -186347725 + MER41B LTR ERV1 156 627 -8 1498 71 0 5 chr6 2932207 2932403 -186347151 - MER4E LTR ERV1 0 779 585 21 36 0 0 chr6 2932656 2932684 -186346870 + GC_rich Low_complexity Low_complexity 1 28 0 2830 86 30 92 chr6 2932735 2933428 -186346126 + SVA Other Other 393 868 -555 1458 101 6 60 chr6 2933441 2933777 -186345777 + SVA Other Other 549 866 -520 6559 71 3 60 chr6 2933843 2934855 -186344699 + SVA Other Other 433 1386 0 1273 99 117 9 chr6 2934872 2935085 -186344469 - MER4B LTR ERV1 -183 427 192 337 174 14 0 chr6 2935100 2935169 -186344385 - AluSp/q SINE Alu -3 300 231 200 321 79 21 chr6 2935369 2935509 -186344045 - L2 LINE L2 0 3272 3125 1141 175 156 63 chr6 2935665 2935980 -186343574 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 2936164 2936266 -186343288 + (TG)n Simple_repeat Simple_repeat 1 100 0 305 239 12 20 chr6 2936287 2936548 -186343006 + (TG)n Simple_repeat Simple_repeat 1 258 0 420 271 0 25 chr6 2936629 2936959 -186342595 + (TG)n Simple_repeat Simple_repeat 1 321 0 234 245 6 13 chr6 2936978 2937137 -186342417 + (TG)n Simple_repeat Simple_repeat 1 158 0 8253 67 1 0 chr6 2937676 2938644 -186340910 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 2939157 2939462 -186340092 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 2939823 2940040 -186339514 - MER20 DNA MER1_type 0 219 4 2468 84 7 3 chr6 2941130 2941439 -186338115 + AluSx SINE Alu 1 310 -2 579 170 54 48 chr6 2941549 2941696 -186337858 + MLT1D LTR MaLR 1 148 -357 1322 76 32 5 chr6 2942034 2942219 -186337335 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 2942513 2943059 -186336495 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 2943105 2943421 -186336133 + MLT1D LTR MaLR 130 505 0 236 355 167 21 chr6 2943527 2943713 -186335841 - MIR SINE MIR -37 225 13 2318 97 7 0 chr6 2943823 2944121 -186335433 - AluSx SINE Alu -12 300 1 2138 141 0 0 chr6 2944601 2944899 -186334655 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 2946254 2946283 -186333271 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 2946598 2946728 -186332826 + FLAM_A SINE Alu 2 130 -3 3578 139 37 35 chr6 2947449 2947606 -186331948 + MER41B LTR ERV1 1 156 -479 1603 165 7 20 chr6 2947606 2947909 -186331645 + AluJo SINE Alu 1 299 -13 3578 139 37 35 chr6 2947909 2948377 -186331177 + MER41B LTR ERV1 156 627 -8 3117 107 26 32 chr6 2948755 2949163 -186330391 - MER4B LTR ERV1 0 779 201 1946 97 29 42 chr6 2949163 2949472 -186330082 - AluSx SINE Alu -7 305 1 3117 107 26 32 chr6 2949472 2949672 -186329882 - MER4B LTR ERV1 -578 201 1 2174 191 48 0 chr6 2950166 2950606 -186328948 - LOR1b LTR ERV1 0 461 1 530 130 11 22 chr6 2950606 2950698 -186328856 - LOR1b-int LTR ERV1 0 8120 8030 * 1638 141 8 4 chr6 2950697 2950960 -186328594 - MER41D-int LTR ERV1 -2056 6064 5801 * 33066 101 37 24 chr6 2950950 2954884 -186324670 - MER41D-int LTR ERV1 -2596 5524 1640 2810 193 43 55 chr6 2954884 2955718 -186323836 - LTR5 LTR ERVK -145 824 1 33066 101 37 24 chr6 2955718 2956504 -186323050 - MER41D-int LTR ERV1 -6480 1640 730 9203 40 2 3 chr6 2956504 2957574 -186321980 + MER11C LTR ERVK 1 1069 -2 33066 101 37 24 chr6 2957574 2958098 -186321456 - MER41D-int LTR ERV1 -7390 730 214 1945 117 34 0 chr6 2958098 2958396 -186321158 + AluSx SINE Alu 1 308 -4 601 170 0 45 chr6 2958455 2958491 -186321063 - FRAM SINE Alu -183 129 93 2818 168 17 73 chr6 2958491 2958858 -186320696 - MER41D LTR ERV1 0 557 234 2018 104 0 7 chr6 2958858 2959146 -186320408 + AluSg SINE Alu 1 286 -24 2818 168 17 73 chr6 2959146 2959368 -186320186 - MER41D LTR ERV1 -323 234 1 601 170 0 45 chr6 2959368 2959443 -186320111 - FRAM SINE Alu -219 93 23 494 207 224 62 chr6 2959531 2959595 -186319959 - Charlie7 DNA MER1_type -586 2026 1974 2040 120 3 3 chr6 2959595 2959904 -186319650 - AluSx SINE Alu -3 309 1 494 207 224 62 chr6 2959904 2960192 -186319362 - Charlie7 DNA MER1_type -638 1974 1617 323 213 16 0 chr6 2960643 2960704 -186318850 - MER94 DNA DNA -1 133 72 324 118 118 0 chr6 2960827 2960895 -186318659 - LTR50 LTR ERVL -7 788 713 1874 147 3 3 chr6 2961974 2962280 -186317274 - AluSx SINE Alu -6 306 1 2136 107 3 3 chr6 2962520 2962828 -186316726 + AluSg SINE Alu 1 308 -2 311 152 0 0 chr6 2963172 2963218 -186316336 + Alu SINE Alu 252 297 -11 1576 237 57 0 chr6 2963735 2964191 -186315363 - MER114 LTR ERV -121 527 46 742 255 13 0 chr6 2964206 2964363 -186315191 - MER45A DNA AcHobo 0 178 20 605 184 9 9 chr6 2964565 2964679 -186314875 - MLT1A2 LTR MaLR 0 374 261 7713 154 73 68 chr6 2964679 2966357 -186313197 + pTR5 LTR ERV1 743 2429 -9 230 187 67 53 chr6 2966627 2966702 -186312852 - L1MA7 LINE L1 -4 6287 6212 2241 124 29 9 chr6 2966702 2967048 -186312506 - LTR1 LTR ERV1 0 785 433 1378 158 12 116 chr6 2967064 2967399 -186312155 - LTR1 LTR ERV1 -462 323 24 388 123 92 0 chr6 2967434 2967499 -186312055 - L1MA8 LINE L1 -76 6215 6145 291 294 165 0 chr6 2967499 2967608 -186311946 + MER50 LTR ERV1 1 127 -607 820 266 122 42 chr6 2967671 2968017 -186311537 + MER50 LTR ERV1 105 490 -244 2076 115 3 0 chr6 2968017 2968312 -186311242 + AluY SINE Alu 1 296 -15 820 266 122 42 chr6 2968312 2968374 -186311180 + MER50 LTR ERV1 490 546 -188 4299 174 67 59 chr6 2968439 2969819 -186309735 + pTR5 LTR ERV1 724 2436 -2 22 0 0 0 chr6 2969924 2969946 -186309608 + AT_rich Low_complexity Low_complexity 1 22 0 583 226 24 8 chr6 2970001 2970125 -186309429 + FLAM_A SINE Alu 4 129 -4 877 128 101 13 chr6 2970208 2970357 -186309197 - MER44D DNA MER2_type 0 605 444 844 89 0 0 chr6 2970414 2970527 -186309027 - MER4E LTR ERV1 -14 765 485 3101 123 161 21 chr6 2970532 2971110 -186308444 - MER4D LTR ERV1 -237 666 8 2267 87 3 0 chr6 2971110 2971409 -186308145 + AluSp SINE Alu 1 300 -13 421 211 120 49 chr6 2971425 2971463 -186308091 - MER44D DNA MER2_type -2069 422 388 2097 90 10 3 chr6 2971463 2971751 -186307803 + AluSq SINE Alu 1 290 -23 421 211 120 49 chr6 2971751 2971766 -186307788 - MER44D DNA MER2_type -2103 388 375 213 39 0 0 chr6 2971766 2971792 -186307762 + (TC)n Simple_repeat Simple_repeat 1 26 0 421 211 120 49 chr6 2971792 2971879 -186307675 - MER44D DNA MER2_type -2116 375 1 1851 180 50 40 chr6 2971899 2972343 -186307211 + MER83 LTR ERV1 1 448 0 2084 125 0 6 chr6 2972740 2973053 -186306501 + AluSx SINE Alu 1 311 -1 1728 144 3 11 chr6 2974567 2974871 -186304683 + AluSx SINE Alu 1 302 0 2238 87 0 0 chr6 2975465 2975764 -186303790 + AluY SINE Alu 1 299 -12 989 95 15 7 chr6 2975773 2975910 -186303644 + AluSg SINE Alu 1 138 -172 2113 103 0 19 chr6 2975911 2976222 -186303332 + AluSx SINE Alu 1 305 -7 1263 310 170 13 chr6 2978232 2979263 -186300291 + L2 LINE L2 2094 3290 -23 2197 95 0 0 chr6 2979270 2979564 -186299990 + AluSx SINE Alu 6 299 -13 183 194 0 0 chr6 2979564 2979595 -186299959 + L2 LINE L2 3240 3270 -2 588 250 83 46 chr6 2979988 2980118 -186299436 - MER58A DNA MER1_type -2196 224 81 2160 113 0 0 chr6 2980118 2980429 -186299125 + AluSq SINE Alu 1 311 -2 588 250 83 46 chr6 2980429 2980514 -186299040 - MER58A DNA MER1_type -2339 81 1 314 163 101 93 chr6 2980877 2981006 -186298548 + MLT1J LTR MaLR 209 338 -173 201 291 18 0 chr6 2981585 2981640 -186297914 - L2 LINE L2 -2 3270 3215 1740 161 3 35 chr6 2982566 2982788 -186296766 + AluJo SINE Alu 1 212 -100 1908 115 0 11 chr6 2982788 2983066 -186296488 + AluSc SINE Alu 23 297 -12 1740 161 3 35 chr6 2983066 2983154 -186296400 + AluJo SINE Alu 212 301 -11 2209 114 0 0 chr6 2983925 2984233 -186295321 + AluSx SINE Alu 1 308 -4 2160 89 7 0 chr6 2984812 2985105 -186294449 + AluSx SINE Alu 1 295 -17 531 210 185 107 chr6 2985304 2985557 -186293997 + MLT1H1 LTR MaLR 66 298 -257 2295 77 3 0 chr6 2985557 2985854 -186293700 + AluSp SINE Alu 1 298 -15 531 210 185 107 chr6 2985854 2986048 -186293506 + MLT1H1 LTR MaLR 298 548 -7 292 260 0 13 chr6 2986063 2986140 -186293414 + MLT1H1-int LTR MaLR 15 90 -1281 252 224 138 0 chr6 2986291 2986349 -186293205 + MLT1H1-int LTR MaLR 476 541 -830 1737 171 13 0 chr6 2987023 2987321 -186292233 + MLT1B LTR MaLR 1 302 -88 1051 221 71 24 chr6 2989741 2990189 -186289365 + MLT1D LTR MaLR 1 505 0 695 156 25 8 chr6 2990917 2991039 -186288515 - AluJb SINE Alu -187 125 2 448 277 161 0 chr6 2991419 2991574 -186287980 + MIR3 SINE MIR 20 199 -9 343 333 113 33 chr6 2991802 2992267 -186287287 + L1 LINE L1 3930 4429 -1717 233 373 24 24 chr6 2992340 2992509 -186287045 - MIR SINE MIR -90 172 4 516 271 46 13 chr6 2993005 2993156 -186286398 + LTR35 LTR ERV1 463 618 0 578 238 78 24 chr6 2993630 2993836 -186285718 - HAL1 LINE L1 0 2507 2291 787 215 0 6 chr6 2993841 2994004 -186285550 - AluJo SINE Alu 0 312 151 290 236 95 107 chr6 2994071 2994313 -186285241 - HAL1 LINE L1 -358 2149 1911 1860 158 13 16 chr6 2995445 2995748 -186283806 + MER1B DNA MER1_type 38 339 0 872 182 13 0 chr6 2995813 2995972 -186283582 - AluJo SINE Alu -151 161 1 6006 94 14 25 chr6 2996255 2997491 -186282063 + L1PA14 LINE L1 4941 6161 0 3281 95 21 31 chr6 2996976 2997493 -186282061 + L1PA13 LINE L1 5652 6163 0 356 287 17 98 chr6 2997685 2997859 -186281695 - HAL1 LINE L1 -1606 901 742 222 240 0 0 chr6 2998362 2998412 -186281142 + (TA)n Simple_repeat Simple_repeat 2 51 0 287 49 24 0 chr6 2998779 2998820 -186280734 + (TG)n Simple_repeat Simple_repeat 2 43 0 1100 103 0 0 chr6 2998872 2999017 -186280537 + AluSg SINE Alu 1 145 -165 429 115 179 0 chr6 2999017 2999095 -186280459 + AluSc SINE Alu 201 292 -17 198 103 0 0 chr6 2999742 2999771 -186279783 + (A)n Simple_repeat Simple_repeat 1 29 0 215 222 25 37 chr6 3000401 3000482 -186279072 + C-rich Low_complexity Low_complexity 1 80 0 391 133 0 0 chr6 3000899 3000959 -186278595 + MER41B LTR ERV1 131 190 -445 2021 85 61 0 chr6 3000960 3001254 -186278300 + AluSx SINE Alu 1 312 0 6101 83 25 20 chr6 3001256 3002197 -186277357 + L1PB1 LINE L1 5151 6097 -54 1908 130 7 17 chr6 3002197 3002497 -186277057 + AluSg SINE Alu 1 297 -13 6101 83 25 20 chr6 3002497 3002553 -186277001 + L1PB1 LINE L1 6097 6151 0 32 26 0 0 chr6 3002554 3002593 -186276961 + AT_rich Low_complexity Low_complexity 1 39 0 430 239 19 65 chr6 3002846 3003001 -186276553 - MER20 DNA MER1_type 0 219 72 389 273 66 93 chr6 3003018 3003484 -186276070 - L1M4 LINE L1 -906 5240 4798 2120 112 0 0 chr6 3003606 3003902 -186275652 - AluSg SINE Alu -14 296 1 1913 150 0 0 chr6 3003958 3004245 -186275309 + AluSg SINE Alu 1 287 -23 33 0 0 0 chr6 3004245 3004278 -186275276 + AT_rich Low_complexity Low_complexity 1 33 0 436 162 0 0 chr6 3004292 3004360 -186275194 + AluS SINE Alu 2 69 -243 218 54 0 27 chr6 3004380 3004417 -186275137 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 485 308 65 16 chr6 3004420 3004895 -186274659 - L1M4 LINE L1 -1530 4616 4122 196 360 11 22 chr6 3004948 3005037 -186274517 + L3 LINE CR1 324 411 -1166 222 239 60 15 chr6 3005315 3005382 -186274172 + L3 LINE CR1 892 961 -616 4868 133 47 21 chr6 3006185 3007055 -186272499 - MER4D LTR ERV1 0 872 1 22 0 0 0 chr6 3007135 3007157 -186272397 + AT_rich Low_complexity Low_complexity 1 22 0 2170 142 39 88 chr6 3007944 3008276 -186271278 + MER4B LTR ERV1 1 348 -431 1778 148 40 0 chr6 3008276 3008573 -186270981 - AluJb SINE Alu -3 309 1 2170 142 39 88 chr6 3008573 3008847 -186270707 + MER4B LTR ERV1 348 779 0 3820 147 3 51 chr6 3008936 3009603 -186269951 + MER41B LTR ERV1 1 635 0 2363 161 60 31 chr6 3010956 3010993 -186268561 + MER31A LTR ERV1 1 35 -450 1876 130 22 0 chr6 3010993 3011428 -186268126 - AluSx SINE Alu 0 441 1 2363 161 60 31 chr6 3011428 3011843 -186267711 + MER31A LTR ERV1 35 467 -18 216 297 16 0 chr6 3012104 3012168 -186267386 + CT-rich Low_complexity Low_complexity 4 68 0 806 160 23 0 chr6 3012185 3012316 -186267238 - FRAM SINE Alu -38 138 5 382 182 0 26 chr6 3013091 3013168 -186266386 + MER39 LTR ERV1 633 707 0 2053 120 0 14 chr6 3013201 3013493 -186266061 + AluSx SINE Alu 1 288 -24 1136 116 0 0 chr6 3013508 3013672 -186265882 + AluSg/x SINE Alu 130 293 -17 2224 103 0 0 chr6 3014488 3014790 -186264764 - AluSx SINE Alu -10 302 1 2289 88 0 0 chr6 3015256 3015552 -186264002 - AluSg SINE Alu -14 296 1 343 299 97 83 chr6 3015552 3015830 -186263724 - L2 LINE L2 -6 3266 2985 2296 137 154 7 chr6 3016055 3016510 -186263044 - MER1A DNA MER1_type -8 525 1 2140 113 0 0 chr6 3016616 3016916 -186262638 + AluSg SINE Alu 1 300 -10 318 325 68 24 chr6 3016925 3017174 -186262380 - L2 LINE L2 -798 2516 2257 285 321 0 79 chr6 3019729 3019869 -186259685 + L2 LINE L2 3141 3269 -3 3913 105 27 5 chr6 3019906 3020458 -186259096 + LTR6A LTR ERV1 1 564 0 33 43 0 0 chr6 3020718 3020765 -186258789 + AT_rich Low_complexity Low_complexity 1 47 0 1945 122 0 22 chr6 3020818 3021129 -186258425 + AluSx SINE Alu 1 304 -8 520 176 77 6 chr6 3021465 3021591 -186257963 - L1MD3 LINE L1 0 7982 6246 2172 197 35 0 chr6 3021592 3022014 -186257540 - MER54A LTR ERVL 0 901 465 259 199 164 68 chr6 3021955 3022101 -186257453 + MER74A LTR ERVL 355 514 -44 * 316 223 100 3 chr6 3022121 3022227 -186257327 - L1MD3 LINE L1 -108 7871 7565 2499 56 0 0 chr6 3022387 3022692 -186256862 - AluY SINE Alu -6 305 1 282 91 0 0 chr6 3023108 3023149 -186256405 + MSTB1 LTR MaLR 4 44 -382 812 213 0 6 chr6 3023149 3023323 -186256231 - FRAM SINE Alu -3 173 1 2145 128 80 13 chr6 3023323 3023698 -186255856 + MSTB1 LTR MaLR 33 432 0 1341 215 100 0 chr6 3024137 3024448 -186255106 + MER2 DNA MER2_type 2 343 -1 470 180 9 81 chr6 3024694 3024805 -186254749 - Tigger1 DNA MER2_type -2315 103 1 274 109 254 0 chr6 3024808 3024863 -186254691 + L1M4c LINE L1 1452 1520 -4864 * 2715 164 58 39 chr6 3024858 3025285 -186254269 + L1MB4 LINE L1 4827 5245 -935 2317 74 3 0 chr6 3025285 3025584 -186253970 + AluSp SINE Alu 1 300 -13 2715 164 58 39 chr6 3025584 3026068 -186253486 + L1MB4 LINE L1 5245 5773 -407 591 15 0 0 chr6 3026078 3026146 -186253408 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1356 147 9 0 chr6 3026147 3026371 -186253183 - AluSp SINE Alu 0 313 88 1704 181 18 29 chr6 3026387 3026618 -186252936 + L1MB4 LINE L1 5799 6026 -154 1797 130 51 0 chr6 3026618 3026910 -186252644 - AluSx SINE Alu -5 307 1 1704 181 18 29 chr6 3026910 3027064 -186252490 + L1MB4 LINE L1 6026 6180 0 297 271 97 7 chr6 3028347 3028491 -186251063 - L1MD1 LINE L1 -87 6155 5999 262 86 0 0 chr6 3028568 3028603 -186250951 - tRNA-Gly-GGG tRNA tRNA -39 35 1 314 237 32 11 chr6 3028612 3028705 -186250849 - L1MD1 LINE L1 -456 5903 5809 258 145 13 64 chr6 3028896 3029060 -186250494 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 183 286 20 0 chr6 3029554 3029603 -186249951 - MIR SINE MIR -88 174 125 2176 72 14 3 chr6 3029793 3030086 -186249468 - AluSg SINE Alu -14 296 1 1547 113 4 4 chr6 3030089 3030319 -186249235 - AluSg/x SINE Alu -8 302 73 2208 102 16 3 chr6 3030330 3030635 -186248919 - AluSq SINE Alu -4 309 1 2064 130 0 3 chr6 3031559 3031858 -186247696 - AluSx SINE Alu -13 299 2 279 352 56 28 chr6 3031866 3032045 -186247509 + L2 LINE L2 2718 2901 -413 290 214 0 0 chr6 3032046 3032102 -186247452 - AluJo SINE Alu 0 302 247 1028 163 6 12 chr6 3032103 3032275 -186247279 - AluJo SINE Alu -112 200 30 298 270 92 116 chr6 3033183 3033476 -186246078 - MLT1J LTR MaLR -127 384 99 246 228 0 0 chr6 3034056 3034113 -186245441 - L1MB2 LINE L1 0 6171 6115 1497 84 0 0 chr6 3034154 3034344 -186245210 - AluSx SINE Alu -122 190 1 2006 182 51 31 chr6 3034380 3034879 -186244675 - L1M3 LINE L1 -408 5772 5266 303 265 29 20 chr6 3035068 3035170 -186244384 - MIR SINE MIR -66 142 40 541 191 0 0 chr6 3035837 3035926 -186243628 - FLAM SINE Alu -15 128 40 241 321 24 73 chr6 3035999 3036164 -186243390 + L2 LINE L2 3138 3294 -19 1014 177 14 32 chr6 3036354 3036574 -186242980 - MER20 DNA MER1_type -3 216 1 2164 92 23 3 chr6 3037385 3037690 -186241864 + AluSp SINE Alu 1 311 -2 1121 130 0 6 chr6 3037717 3037879 -186241675 + AluSx SINE Alu 1 161 -151 4183 106 11 11 chr6 3037915 3038531 -186241023 - MER11C LTR ERVK -14 1057 442 5682 173 56 16 chr6 3038642 3040341 -186239213 + L1M3f LINE L1 269 2035 -4065 365 288 137 7 chr6 3040353 3040499 -186239055 + MIR SINE MIR 81 245 -17 2690 16 0 0 chr6 3041087 3041395 -186238159 - AluY SINE Alu -3 308 1 536 274 105 11 chr6 3042870 3043060 -186236494 - MIR SINE MIR -8 254 47 298 289 114 0 chr6 3043872 3043986 -186235568 - L2 LINE L2 -1 3312 3186 2240 103 0 0 chr6 3044289 3044591 -186234963 + AluSx SINE Alu 1 302 -10 357 145 0 0 chr6 3045161 3045223 -186234331 + (CA)n Simple_repeat Simple_repeat 1 62 0 304 289 10 39 chr6 3046001 3046105 -186233449 - L1MB2 LINE L1 -2453 5355 5255 393 241 145 48 chr6 3046136 3046364 -186233190 - L1MB2 LINE L1 -1686 4460 4211 1981 113 7 0 chr6 3046365 3046678 -186232876 + AluSx SINE Alu 1 315 0 599 259 100 80 chr6 3046977 3047328 -186232226 - L1ME4a LINE L1 0 6121 5764 3154 169 7 4 chr6 3047920 3048483 -186231071 - L1PA16 LINE L1 -3 6163 5599 825 168 0 21 chr6 3048617 3048763 -186230791 - FLAM_C SINE Alu 0 143 4 1600 135 39 143 chr6 3049013 3049115 -186230439 + MER7A DNA MER2_type 3 114 -2924 1451 173 60 7 chr6 3049115 3049398 -186230156 - AluJo SINE Alu -12 300 3 1600 135 39 143 chr6 3049398 3049679 -186229875 + MER7A DNA MER2_type 114 344 -2 484 70 0 56 chr6 3049694 3049765 -186229789 + Alu SINE Alu 5 71 -240 371 240 142 49 chr6 3049785 3049989 -186229565 - L1 LINE L1 -1713 4433 4211 1955 75 68 4 chr6 3049990 3050271 -186229283 + AluY SINE Alu 1 299 -12 1666 168 7 21 chr6 3050276 3050567 -186228987 + AluJo SINE Alu 1 287 -25 1537 190 7 7 chr6 3050568 3050873 -186228681 + AluJb SINE Alu 1 305 -7 2238 66 17 0 chr6 3052546 3052833 -186226721 - AluSp SINE Alu -21 292 1 2065 81 3 14 chr6 3053375 3053658 -186225896 + AluSx SINE Alu 22 301 -11 222 206 63 16 chr6 3053661 3053724 -186225830 - MIR SINE MIR -162 100 35 880 310 114 34 chr6 3053804 3054337 -186225217 + MLT1K LTR MaLR 12 587 -1 340 267 44 0 chr6 3054592 3054682 -186224872 + MIR SINE MIR 55 148 -60 372 305 58 0 chr6 3055046 3055200 -186224354 - MIR SINE MIR -87 175 13 330 329 29 7 chr6 3055364 3055504 -186224050 + L1MEd LINE L1 300 442 -5974 4688 167 30 47 chr6 3055658 3056894 -186222660 + pTR5 LTR ERV1 6 595 -119 492 320 59 15 chr6 3057053 3057325 -186222229 + L1MEd LINE L1 854 1137 -5279 1687 167 10 3 chr6 3057421 3057714 -186221840 + AluJo SINE Alu 1 295 -17 326 250 167 36 chr6 3057840 3058008 -186221546 + L1MEd LINE L1 2178 2367 -4059 740 314 59 15 chr6 3058038 3058503 -186221051 + L1MEd LINE L1 2401 2889 -3537 2190 80 7 0 chr6 3058503 3058790 -186220764 + AluSp SINE Alu 1 289 -24 740 314 59 15 chr6 3058790 3058801 -186220753 + L1MEd LINE L1 2889 2898 -3528 269 231 26 39 chr6 3058846 3058924 -186220630 + L1ME3A LINE L1 5485 5561 -603 318 321 120 55 chr6 3058969 3059243 -186220311 + L1ME3A LINE L1 5799 6090 -80 1680 183 0 14 chr6 3059360 3059655 -186219899 + AluJo SINE Alu 1 291 -21 660 88 22 0 chr6 3060025 3060116 -186219438 - AluJb SINE Alu -15 297 205 794 161 0 29 chr6 3061719 3061856 -186217698 + FLAM_C SINE Alu 1 133 0 963 198 19 14 chr6 3061945 3062152 -186217402 - MLT1A1 LTR MaLR 0 365 158 985 150 0 53 chr6 3062152 3062339 -186217215 - AluJo SINE Alu -135 177 1 1485 239 23 47 chr6 3062379 3062806 -186216748 + MLT1C LTR MaLR 1 417 -50 472 106 9 50 chr6 3062839 3062933 -186216621 + L1MDa LINE L1 1217 1304 -5236 1686 171 7 10 chr6 3062933 3063238 -186216316 + AluJo SINE Alu 1 304 -8 472 106 9 50 chr6 3063238 3063290 -186216264 + L1MDa LINE L1 1304 1357 -5183 * 624 207 41 12 chr6 3063289 3063458 -186216096 + L1MDa LINE L1 1644 1817 -4723 2341 242 57 7 chr6 3063461 3063519 -186216035 + L1MDa LINE L1 2952 3006 -3534 2387 149 16 71 chr6 3063519 3063970 -186215584 + MSTB LTR MaLR 1 426 0 2341 242 57 7 chr6 3063970 3064660 -186214894 + L1MDa LINE L1 3006 3738 -2802 2442 122 100 5 chr6 3064675 3065084 -186214470 + MER83 LTR ERV1 1 448 0 9622 179 22 42 chr6 3065108 3066938 -186212616 + MER83-int LTR ERV1 22 1815 -2470 2109 174 14 68 chr6 3066907 3066990 -186212564 + MER83-int LTR ERV1 4373 4459 -1487 * 1853 36 5 0 chr6 3066990 3067212 -186212342 - L1PA4 LINE L1 -8 6147 5925 2109 174 14 68 chr6 3067212 3067616 -186211938 + MER83-int LTR ERV1 4459 4834 -1112 1646 176 37 3 chr6 3067769 3068065 -186211489 + AluJb SINE Alu 1 306 -6 3315 145 59 66 chr6 3068065 3068756 -186210798 + MER83-int LTR ERV1 5365 6204 -394 2329 44 40 7 chr6 3068756 3069053 -186210501 + AluY SINE Alu 3 309 -2 3315 145 59 66 chr6 3069053 3069105 -186210449 + MER83-int LTR ERV1 6204 6255 -343 445 151 118 132 chr6 3069140 3069292 -186210262 + MER83-int LTR ERV1 5924 6073 -258 * 2109 141 62 25 chr6 3069287 3069641 -186209913 + MER83-int LTR ERV1 2663 3029 -1256 * 2138 175 17 62 chr6 3069634 3070052 -186209502 + MER83-int LTR ERV1 3876 4274 -11 2390 130 78 53 chr6 3070053 3070426 -186209128 + MER83 LTR ERV1 1 388 -60 2210 86 3 0 chr6 3070426 3070717 -186208837 - AluSp SINE Alu -21 292 1 2390 130 78 53 chr6 3070717 3070780 -186208774 + MER83 LTR ERV1 388 448 0 1196 232 58 35 chr6 3070811 3071242 -186208312 + L1MDa LINE L1 3779 4219 -2321 1893 130 7 33 chr6 3071259 3071560 -186207994 + AluSx SINE Alu 1 293 -19 652 235 36 41 chr6 3071594 3071815 -186207739 + L1MDa LINE L1 4158 4377 -2163 226 53 0 0 chr6 3071820 3071858 -186207696 - AluJo SINE Alu 0 302 265 800 119 8 0 chr6 3071858 3071976 -186207578 - AluSq/x SINE Alu -194 119 1 1956 219 96 57 chr6 3072037 3072218 -186207336 + L1MDa LINE L1 4455 4627 -1913 2309 90 0 0 chr6 3072218 3072530 -186207024 + AluSq SINE Alu 1 312 -1 1956 219 96 57 chr6 3072530 3073120 -186206434 + L1MDa LINE L1 4627 5256 -1284 231 36 0 0 chr6 3073141 3073169 -186206385 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1538 169 22 0 chr6 3073172 3073439 -186206115 - AluJo SINE Alu -32 280 8 2317 235 17 26 chr6 3074954 3075605 -186203949 - L1M4 LINE L1 -1748 4398 3754 2203 93 23 0 chr6 3075655 3075957 -186203597 + AluSc SINE Alu 1 309 0 1739 157 14 3 chr6 3076129 3076422 -186203132 - AluJo SINE Alu -16 296 1 1717 216 176 7 chr6 3077974 3078548 -186201006 - L1M4 LINE L1 -1612 4534 3864 886 174 0 0 chr6 3078552 3078696 -186200858 + FAM SINE Alu 5 148 -37 1998 117 0 0 chr6 3078728 3079035 -186200519 - AluSx SINE Alu 0 307 1 298 270 92 116 chr6 3079658 3079951 -186199603 + MLT1J LTR MaLR 99 384 -127 214 211 28 37 chr6 3081917 3082026 -186197528 + (CACGC)n Simple_repeat Simple_repeat 1 108 0 2072 88 37 3 chr6 3082125 3082419 -186197135 + AluSx SINE Alu 1 304 -8 298 264 94 26 chr6 3082527 3082829 -186196725 + L1MD1 LINE L1 5815 6156 -86 2888 48 3 0 chr6 3082940 3083292 -186196262 + LTR5 LTR ERVK 1 353 -616 3139 31 0 0 chr6 3083292 3083649 -186195905 + HERVK LTR ERVK 4787 5143 -2100 2225 35 6 99 chr6 3084441 3084784 -186194770 - AluY SINE Alu 0 311 1 1384 231 24 11 chr6 3085327 3085502 -186194052 - L1MB4 LINE L1 -1 6179 6005 2276 205 53 37 chr6 3085502 3086584 -186192970 - L1MC4 LINE L1 -461 5719 4863 274 131 229 0 chr6 3086595 3086656 -186192898 - L1M4c LINE L1 -4858 1526 1452 14424 126 40 18 chr6 3086659 3088107 -186191447 + Tigger1 DNA MER2_type 1 1416 -1002 2023 102 0 0 chr6 3088107 3088451 -186191103 + AluSq SINE Alu 1 344 0 14424 126 40 18 chr6 3088451 3088864 -186190690 + Tigger1 DNA MER2_type 1416 1818 -600 2250 105 0 0 chr6 3088864 3089170 -186190384 + AluSx SINE Alu 1 306 -6 14424 126 40 18 chr6 3089170 3089349 -186190205 + Tigger1 DNA MER2_type 1818 1992 -426 2433 57 0 0 chr6 3089349 3089648 -186189906 + AluY SINE Alu 1 299 -12 14424 126 40 18 chr6 3089648 3089970 -186189584 + Tigger1 DNA MER2_type 1992 2418 0 2715 168 14 89 chr6 3089970 3090665 -186188889 + L1MB8 LINE L1 5531 6173 -5 28 0 0 0 chr6 3090665 3090693 -186188861 + AT_rich Low_complexity Low_complexity 1 28 0 2165 101 7 0 chr6 3090693 3090999 -186188555 - AluSg SINE Alu -2 308 1 662 218 70 0 chr6 3091009 3091151 -186188403 + MER96 DNA MER1_type? 23 174 -1 2439 24 0 70 chr6 3093101 3093432 -186186122 + AluY SINE Alu 1 308 -3 408 203 123 123 chr6 3094121 3094169 -186185385 + L2 LINE L2 3176 3223 -90 1981 119 34 0 chr6 3094169 3094464 -186185090 - AluSx SINE Alu -7 305 1 408 203 123 123 chr6 3094464 3094553 -186185001 + L2 LINE L2 3222 3313 0 183 357 71 12 chr6 3094560 3094644 -186184910 + L2 LINE L2 3180 3268 -4 4489 165 70 64 chr6 3094680 3095821 -186183733 - L1MC2 LINE L1 -1 6343 5199 2292 82 0 3 chr6 3095881 3096184 -186183370 - AluSq SINE Alu -11 302 1 23 33 0 0 chr6 3096192 3096222 -186183332 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 3097062 3097096 -186182458 + GC_rich Low_complexity Low_complexity 1 34 0 2044 99 10 3 chr6 3097871 3098173 -186181381 + AluSx SINE Alu 2 305 -7 1883 132 18 0 chr6 3098585 3098866 -186180688 - AluSg SINE Alu -19 291 6 216 368 58 0 chr6 3099084 3099171 -186180383 + MIR SINE MIR 88 179 -83 348 179 64 26 chr6 3099305 3099383 -186180171 - MLT1L LTR MaLR -532 83 3 402 233 89 33 chr6 3100367 3100547 -186179007 - L1ME4a LINE L1 -6 6115 5926 251 226 52 70 chr6 3100582 3100697 -186178857 - L1ME4a LINE L1 -284 5837 5725 199 218 164 18 chr6 3100741 3100796 -186178758 - L2 LINE L2 -52 3220 3158 310 263 11 63 chr6 3101238 3101333 -186178221 - L1MC4 LINE L1 -1339 6703 6614 * 335 243 0 107 chr6 3101276 3101379 -186178175 + L1MC4 LINE L1 6614 6705 -1337 249 147 29 15 chr6 3101380 3101448 -186178106 + (TA)n Simple_repeat Simple_repeat 1 69 0 512 226 178 0 chr6 3101467 3101613 -186177941 - MIR SINE MIR -70 192 21 1788 206 90 25 chr6 3102231 3102720 -186176834 - L1ME2 LINE L1 -53 6111 5591 2281 82 0 19 chr6 3102804 3103120 -186176434 - AluSg SINE Alu 0 310 1 734 232 12 4 chr6 3103227 3103425 -186176129 - L1ME4a LINE L1 -541 5625 5425 543 265 151 62 chr6 3103606 3104077 -186175477 - L1MEd LINE L1 -5250 869 357 373 309 20 7 chr6 3104225 3104377 -186175177 - L1MEd LINE L1 -5960 159 6 1794 144 0 39 chr6 3104527 3104839 -186174715 + AluJo SINE Alu 2 301 -11 243 0 0 0 chr6 3104840 3104867 -186174687 + (TA)n Simple_repeat Simple_repeat 1 27 0 207 88 0 0 chr6 3105668 3105702 -186173852 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 774 145 0 0 chr6 3106201 3106318 -186173236 - FLAM_A SINE Alu -6 136 20 641 171 77 0 chr6 3106365 3106482 -186173072 + AluJb SINE Alu 5 130 -182 23 33 0 0 chr6 3106823 3106853 -186172701 + AT_rich Low_complexity Low_complexity 1 30 0 1022 173 0 18 chr6 3107049 3107217 -186172337 - FRAM SINE Alu -1 165 1 2028 107 3 0 chr6 3107229 3107518 -186172036 - AluSg SINE Alu -20 290 1 271 231 249 72 chr6 3107546 3107767 -186171787 - L2 LINE L2 -177 3095 2836 470 51 17 0 chr6 3107979 3108038 -186171516 - 5S rRNA rRNA -29 92 33 225 281 271 0 chr6 3108768 3108864 -186170690 - L2 LINE L2 0 3313 3192 2401 80 3 0 chr6 3109719 3110031 -186169523 + AluSp SINE Alu 1 313 0 430 259 36 27 chr6 3111442 3111554 -186168000 + L2 LINE L2 3201 3313 0 209 295 64 26 chr6 3111737 3111815 -186167739 - L2 LINE L2 -2 3311 3231 553 325 135 43 chr6 3111881 3112732 -186166822 + L2 LINE L2 2165 3113 -159 2201 113 0 0 chr6 3112732 3113032 -186166522 - AluSc SINE Alu -9 300 1 553 325 135 43 chr6 3113032 3113119 -186166435 + L2 LINE L2 3113 3191 -81 1729 149 17 13 chr6 3113764 3113776 -186165778 - L1MB3 LINE L1 -153 6030 6020 435 179 0 11 chr6 3113776 3113871 -186165683 - L1MB3 LINE L1 -2 6181 6088 1729 149 17 13 chr6 3113871 3114159 -186165395 - L1MB3 LINE L1 -163 6020 5729 1475 193 56 3 chr6 3114283 3114589 -186164965 - L1MB3 LINE L1 -430 5812 5491 1953 241 82 29 chr6 3114605 3115131 -186164423 - MER21B LTR ERV1 -270 593 40 503 151 0 0 chr6 3115141 3115227 -186164327 - L1MDa LINE L1 -4482 2058 1973 4403 206 109 113 chr6 3115231 3115700 -186163854 - L1MDa LINE L1 -4745 1795 1326 2090 65 61 0 chr6 3115700 3115978 -186163576 - AluY SINE Alu -16 295 1 4403 206 109 113 chr6 3115978 3116860 -186162694 - L1MDa LINE L1 -5214 1326 361 629 167 0 0 chr6 3116860 3116950 -186162604 - 5S rRNA rRNA -31 90 1 4403 206 109 113 chr6 3116950 3117310 -186162244 - L1MDa LINE L1 -6179 361 1 22 70 0 0 chr6 3117659 3117702 -186161852 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 3118536 3118557 -186160997 + AT_rich Low_complexity Low_complexity 1 21 0 850 276 15 15 chr6 3118560 3118901 -186160653 + L1MC/D LINE L1 2337 2677 -3469 763 264 113 27 chr6 3121796 3122126 -186157428 + L1MC/D LINE L1 2688 3081 -3065 180 0 0 0 chr6 3122126 3122146 -186157408 + (TA)n Simple_repeat Simple_repeat 2 21 0 763 264 113 27 chr6 3122146 3122338 -186157216 + L1MC/D LINE L1 3081 3255 -2891 1381 186 29 14 chr6 3122349 3122624 -186156930 + AluJo SINE Alu 25 303 -9 1740 287 80 27 chr6 3122624 3123392 -186156162 + L1MC/D LINE L1 3245 4074 -2072 1732 161 28 3 chr6 3123392 3123683 -186155871 - AluJb SINE Alu -14 298 1 1740 287 80 27 chr6 3123683 3123870 -186155684 + L1MC/D LINE L1 4074 4250 -1896 459 244 65 30 chr6 3123894 3124095 -186155459 + L1MC/D LINE L1 4402 4609 -1537 2256 101 0 0 chr6 3124096 3124404 -186155150 - AluY SINE Alu -3 308 1 2083 102 0 0 chr6 3124409 3124716 -186154838 - AluSx SINE Alu 0 307 1 1242 270 49 36 chr6 3124766 3125296 -186154258 + L1MC/D LINE L1 4621 5157 -989 35 41 0 0 chr6 3125337 3125386 -186154168 + AT_rich Low_complexity Low_complexity 1 49 0 501 267 53 25 chr6 3125416 3125459 -186154095 + L1MC/D LINE L1 5156 5196 -1009 1395 156 84 11 chr6 3125459 3125745 -186153809 + AluJo SINE Alu 1 305 0 501 267 53 25 chr6 3125745 3125996 -186153558 + L1MC/D LINE L1 5196 5471 -734 417 314 69 5 chr6 3126024 3126228 -186153326 + L1MC4a LINE L1 4491 4707 -1439 358 251 81 8 chr6 3126282 3126624 -186152930 - LTR16A LTR ERVL -2 448 1 615 298 133 29 chr6 3126762 3126808 -186152746 + L1MC4a LINE L1 5258 5298 -823 2381 77 0 0 chr6 3126808 3127119 -186152435 + AluY SINE Alu 1 311 0 615 298 133 29 chr6 3127119 3127673 -186151881 + L1MC4a LINE L1 5298 5545 -576 1775 146 3 11 chr6 3127685 3127972 -186151582 + AluSx SINE Alu 1 285 -27 2134 106 7 7 chr6 3128137 3128438 -186151116 - AluSx SINE Alu -11 301 1 22 88 0 0 chr6 3128481 3128538 -186151016 + AT_rich Low_complexity Low_complexity 1 57 0 1297 164 126 0 chr6 3128550 3128819 -186150735 + AluJb SINE Alu 1 303 -9 867 209 0 17 chr6 3128854 3129031 -186150523 + FRAM SINE Alu 1 174 -2 267 225 152 29 chr6 3129176 3129314 -186150240 + L1ME4a LINE L1 5964 6118 -3 2727 175 50 27 chr6 3129315 3129704 -186149850 - L1MB4 LINE L1 0 6180 5802 2019 129 31 20 chr6 3129704 3130061 -186149493 + MER46B DNA MER2_type 1 236 0 2727 175 50 27 chr6 3130061 3130151 -186149403 - L1MB4 LINE L1 -378 5802 5716 1990 86 31 14 chr6 3130151 3130441 -186149113 - AluSx SINE Alu -17 295 1 2727 175 50 27 chr6 3130441 3130832 -186148722 - L1MB4 LINE L1 -464 5716 5336 1727 136 0 14 chr6 3130832 3131112 -186148442 - AluSx SINE Alu -1 311 36 2727 175 50 27 chr6 3131112 3131626 -186147928 - L1MB4 LINE L1 -844 5336 4669 369 368 12 6 chr6 3132098 3132269 -186147285 - L2 LINE L2 -1673 1641 1470 293 242 182 15 chr6 3132267 3132399 -186147155 + MIR SINE MIR 69 222 -40 * 2096 101 21 0 chr6 3132410 3132697 -186146857 - AluSx SINE Alu -19 293 1 2109 120 0 3 chr6 3134514 3134813 -186144741 + AluSx SINE Alu 1 298 -14 2142 86 6 32 chr6 3134820 3135133 -186144421 + AluSg SINE Alu 1 305 -5 351 256 26 51 chr6 3135146 3135263 -186144291 - L2 LINE L2 -31 3282 3169 451 305 73 11 chr6 3135744 3135921 -186143633 + MIR3 SINE MIR 20 207 -1 223 222 111 74 chr6 3136112 3136193 -186143361 + MIR SINE MIR 179 262 0 250 304 82 44 chr6 3136606 3136741 -186142813 - L2 LINE L2 -4 3309 3170 3677 164 37 17 chr6 3137171 3137750 -186141804 - L1MB3 LINE L1 0 6183 5585 2258 79 7 7 chr6 3137750 3138053 -186141501 - AluSx SINE Alu -9 303 1 3677 164 37 17 chr6 3138053 3138198 -186141356 - L1MB3 LINE L1 -598 5585 5444 554 243 35 7 chr6 3138649 3138793 -186140761 + MIR SINE MIR 105 252 -10 1046 216 25 0 chr6 3139067 3139271 -186140283 - MER58A DNA MER1_type -15 209 1 353 263 0 114 chr6 3140009 3140074 -186139480 + MER91A DNA MER1_type 88 136 -60 1784 148 3 29 chr6 3140074 3140384 -186139170 - AluJo SINE Alu -10 302 1 353 263 0 114 chr6 3140384 3140432 -186139122 + MER91A DNA MER1_type 136 188 -8 746 141 8 8 chr6 3141048 3141169 -186138385 - FLAM_C SINE Alu -21 122 2 905 167 51 65 chr6 3142235 3142451 -186137103 - MER20 DNA MER1_type 0 219 7 21 0 0 0 chr6 3142706 3142727 -186136827 + AT_rich Low_complexity Low_complexity 1 21 0 1380 176 0 12 chr6 3143474 3143719 -186135835 + AluJo SINE Alu 1 242 -70 470 269 57 14 chr6 3143891 3144032 -186135522 + MIR SINE MIR 72 218 -44 2251 95 0 0 chr6 3144118 3144412 -186135142 + AluSq SINE Alu 2 295 -18 3771 173 30 12 chr6 3145039 3145763 -186133791 - L1MB3 LINE L1 -5 6178 5442 246 186 29 88 chr6 3146129 3146231 -186133323 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 198 339 121 16 chr6 3146652 3146776 -186132778 - MIR3 SINE MIR -52 156 20 362 292 53 0 chr6 3146908 3147021 -186132533 - MER5A DNA MER1_type -7 182 64 2104 95 7 3 chr6 3147584 3147880 -186131674 - AluSq SINE Alu -16 297 1 263 208 47 36 chr6 3148491 3148624 -186130930 + MIR SINE MIR 36 206 -56 1960 116 0 58 chr6 3148834 3149162 -186130392 - AluSc SINE Alu 0 309 1 2381 68 0 3 chr6 3149563 3149855 -186129699 + AluY SINE Alu 21 311 0 1707 118 45 0 chr6 3150889 3151176 -186128378 - L1MA5A LINE L1 0 6297 5998 391 243 0 0 chr6 3151623 3151697 -186127857 + MER81 DNA DNA 3 76 -38 1969 156 9 0 chr6 3151997 3152330 -186127224 + MER2 DNA MER2_type 10 345 0 2174 115 14 0 chr6 3152595 3152890 -186126664 - AluSx SINE Alu -13 299 1 23 0 0 0 chr6 3153790 3153813 -186125741 + AT_rich Low_complexity Low_complexity 1 23 0 945 175 0 12 chr6 3154132 3154298 -186125256 - AluSc SINE Alu -11 298 135 2009 81 7 61 chr6 3154301 3154597 -186124957 - AluSx SINE Alu -13 299 20 365 263 101 86 chr6 3155035 3155366 -186124188 - L1ME4a LINE L1 -3 6118 5778 2308 117 0 0 chr6 3155366 3155664 -186123890 - AluSg SINE Alu -12 298 1 365 263 101 86 chr6 3155664 3155750 -186123804 - L1ME4a LINE L1 -343 5778 5695 340 327 159 10 chr6 3155750 3155958 -186123596 - L1ME LINE L1 -408 5762 5524 818 188 0 7 chr6 3157073 3157211 -186122343 + AluJb SINE Alu 137 273 -39 2227 110 3 3 chr6 3157351 3157652 -186121902 - AluSp SINE Alu -12 301 1 592 168 0 34 chr6 3158149 3158268 -186121286 + MER58 DNA MER1_type 2305 2419 -1 263 303 122 45 chr6 3158498 3158874 -186120680 + L2 LINE L2 1537 1941 -1373 1950 149 3 19 chr6 3160096 3160411 -186119143 + AluJb SINE Alu 3 312 0 606 281 86 34 chr6 3161334 3161658 -186117896 - L1ME4a LINE L1 -467 5695 5355 1980 143 6 19 chr6 3161974 3162149 -186117405 - AluJb SINE Alu -2 310 139 2544 50 10 0 chr6 3162149 3162447 -186117107 - AluY SINE Alu -10 301 1 1980 143 6 19 chr6 3162447 3162585 -186116969 - AluJb SINE Alu -173 139 1 284 297 49 30 chr6 3162876 3163164 -186116390 - L1MEc LINE L1 -4819 1651 1268 372 345 0 9 chr6 3163185 3163295 -186116259 - L1MEc LINE L1 -5030 1342 1234 303 327 19 31 chr6 3163300 3163462 -186116092 - L1MEc LINE L1 -5398 974 815 181 350 0 0 chr6 3164084 3164144 -186115410 - L2 LINE L2 -8 3264 3205 300 213 110 39 chr6 3164588 3164715 -186114839 - L2 LINE L2 -1 3271 3136 188 368 26 0 chr6 3164778 3164854 -186114700 - L2 LINE L2 -337 2976 2899 1959 137 7 10 chr6 3165571 3165863 -186113691 - AluSc SINE Alu -18 291 1 423 293 98 45 chr6 3166548 3166794 -186112760 + MIR SINE MIR 4 262 0 196 265 29 15 chr6 3166865 3166933 -186112621 + MIR SINE MIR 193 261 -1 227 319 118 0 chr6 3167228 3167363 -186112191 - MIR SINE MIR -70 192 42 335 287 10 0 chr6 3167760 3167861 -186111693 - MIR3 SINE MIR -12 196 95 2182 103 0 10 chr6 3168921 3169213 -186110341 - AluSc SINE Alu -20 289 1 216 322 92 26 chr6 3169302 3169454 -186110100 - MIR SINE MIR -44 218 57 2042 107 4 4 chr6 3169746 3170043 -186109511 + AluSq SINE Alu 14 310 0 729 235 39 0 chr6 3170426 3170605 -186108949 - MLT1B LTR MaLR -204 186 1 2419 85 7 0 chr6 3170858 3171163 -186108391 - AluY SINE Alu -4 307 1 2095 132 6 28 chr6 3171169 3171488 -186108066 - AluJo SINE Alu 0 312 1 200 263 7 0 chr6 3171884 3172036 -186107518 + (TTCGGG)n Simple_repeat Simple_repeat 6 158 0 213 252 0 0 chr6 3172080 3172215 -186107339 + (TTCGGG)n Simple_repeat Simple_repeat 6 140 0 496 278 10 0 chr6 3172241 3172978 -186106576 + (TTCGGG)n Simple_repeat Simple_repeat 1 744 0 371 277 9 0 chr6 3173024 3173502 -186106052 + (TTCGGG)n Simple_repeat Simple_repeat 1 482 0 471 284 18 0 chr6 3173582 3173751 -186105803 + (TTCGGG)n Simple_repeat Simple_repeat 5 176 0 236 276 35 23 chr6 3173783 3173870 -186105684 + MIR SINE MIR 105 192 -70 1288 186 5 0 chr6 3173913 3174134 -186105420 + AluJb SINE Alu 85 306 -6 810 183 0 20 chr6 3174272 3174425 -186105129 - FRAM SINE Alu -4 172 23 1860 196 21 75 chr6 3174456 3174976 -186104578 - MLT2B1 LTR ERVL -11 509 18 577 278 24 24 chr6 3175849 3176018 -186103536 - MIR SINE MIR 0 262 94 2165 100 14 0 chr6 3176476 3176778 -186102776 - AluSx SINE Alu 0 306 1 186 227 0 0 chr6 3177715 3177759 -186101795 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1913 164 9 25 chr6 3179594 3179911 -186099643 + AluJo SINE Alu 1 312 0 583 274 0 0 chr6 3183903 3184027 -186095527 + FLAM_A SINE Alu 1 124 -9 478 312 64 86 chr6 3184030 3184062 -186095492 - MER92A LTR ERV1 -14 398 367 2473 79 7 0 chr6 3184062 3184367 -186095187 + AluSp SINE Alu 5 311 -2 478 312 64 86 chr6 3184367 3184741 -186094813 - MER92A LTR ERV1 -45 367 1 3379 137 6 4 chr6 3185888 3186401 -186093153 - MER75 DNA T2_type 0 514 1 619 360 45 11 chr6 3187171 3187457 -186092097 + MER115 DNA AcHobo 89 384 -309 776 263 105 25 chr6 3187457 3187742 -186091812 + MER77 LTR ERV1 290 597 -8 1301 267 68 32 chr6 3187826 3188298 -186091256 + MER77-int LTR ERV1 2 490 -3701 * 1464 237 23 66 chr6 3188288 3188462 -186091092 + MER77-int LTR ERV1 1218 1398 -2793 2392 116 0 0 chr6 3188462 3188772 -186090782 - AluSx SINE Alu -2 310 1 1464 237 23 66 chr6 3188772 3189036 -186090518 + MER77-int LTR ERV1 1398 1637 -2554 5132 227 52 30 chr6 3189115 3190448 -186089106 + MER77-int LTR ERV1 1631 2993 -1198 679 96 0 0 chr6 3190765 3190859 -186088695 - AluSx SINE Alu -10 302 209 2208 95 7 0 chr6 3191467 3191751 -186087803 - AluSx SINE Alu -22 290 5 4674 167 52 17 chr6 3192218 3193052 -186086502 - MER21B LTR ERV1 0 863 1 1707 121 20 154 chr6 3193483 3193971 -186085583 + MER4A LTR ERV1 1 423 -241 530 255 13 20 chr6 3193983 3194132 -186085422 + MER4C LTR ERV1 276 423 -42 290 250 13 26 chr6 3194129 3194205 -186085349 + MER4C LTR ERV1 389 463 -2 * 766 103 0 8 chr6 3194289 3194406 -186085148 - AluSp/q SINE Alu 0 313 198 1563 97 141 7 chr6 3194406 3194675 -186084879 + LTR7 LTR ERV1 9 313 -137 15579 158 17 33 chr6 3194675 3197944 -186081610 + HERVH LTR ERV1 982 4232 -2297 4512 132 173 23 chr6 3197952 3199317 -186080237 + pTR5 LTR ERV1 740 2438 0 6248 106 9 2 chr6 3199321 3200230 -186079324 + HERVH LTR ERV1 4235 5149 -2564 1342 146 0 0 chr6 3200231 3200451 -186079103 + HERVH LTR ERV1 5600 5819 -1894 * 2147 87 82 14 chr6 3200449 3200816 -186078738 + HERVH LTR ERV1 7322 7713 0 2817 83 95 5 chr6 3200816 3201227 -186078327 + LTR7 LTR ERV1 1 448 -2 1586 101 5 0 chr6 3201229 3201437 -186078117 - AluSx SINE Alu -103 209 1 917 213 0 0 chr6 3201442 3201611 -186077943 - FRAM SINE Alu -7 169 1 2374 90 0 0 chr6 3201752 3202062 -186077492 + AluY SINE Alu 1 310 -1 256 297 14 0 chr6 3202084 3202158 -186077396 - L3 LINE CR1 -75 1502 1428 500 291 30 44 chr6 3202186 3202389 -186077165 - MIR SINE MIR -50 212 13 238 164 36 36 chr6 3202390 3202445 -186077109 + MLT1E3 LTR MaLR 1 55 -569 2810 125 57 13 chr6 3202445 3203034 -186076520 - MER4B LTR ERV1 0 779 1 1269 246 53 59 chr6 3203034 3203556 -186075998 + MLT1E3 LTR MaLR 52 652 -2 365 309 62 16 chr6 3203582 3203825 -186075729 - LTR16C LTR ERVL -5 486 233 2187 123 0 0 chr6 3205117 3205425 -186074129 - AluSx SINE Alu -4 308 1 333 47 0 0 chr6 3205697 3205740 -186073814 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1921 70 0 31 chr6 3205740 3205997 -186073557 - AluY SINE Alu -26 285 37 2271 59 0 0 chr6 3206536 3206808 -186072746 + AluY SINE Alu 1 272 -39 185 156 0 22 chr6 3208267 3208312 -186071242 + (CCCCAG)n Simple_repeat Simple_repeat 3 46 0 342 0 0 0 chr6 3209249 3209287 -186070267 + (TG)n Simple_repeat Simple_repeat 2 39 0 692 243 27 14 chr6 3209397 3209619 -186069935 + MER33 DNA MER1_type 5 229 -95 212 318 148 0 chr6 3209695 3209783 -186069771 - MIR SINE MIR -99 163 63 2389 62 0 3 chr6 3210059 3210363 -186069191 + AluY SINE Alu 1 303 -8 189 262 49 0 chr6 3210951 3211012 -186068542 + MIR SINE MIR 59 122 -86 23 0 0 0 chr6 3212283 3212306 -186067248 + AT_rich Low_complexity Low_complexity 1 23 0 1394 141 38 0 chr6 3212476 3212689 -186066865 - AluSg/x SINE Alu -14 296 76 956 248 56 0 chr6 3213182 3213416 -186066138 + MIR SINE MIR 15 261 -1 268 123 0 35 chr6 3213432 3213489 -186066065 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 23 0 0 0 chr6 3213994 3214017 -186065537 + GC_rich Low_complexity Low_complexity 1 23 0 43 97 0 0 chr6 3314633 3314767 -185964787 + GC_rich Low_complexity Low_complexity 1 134 0 294 338 214 33 chr6 3317676 3318289 -185961265 - L3 LINE CR1 -2 1575 852 1937 136 0 26 chr6 3318551 3318861 -185960693 - AluJo SINE Alu 0 312 11 1550 168 25 50 chr6 3318950 3319372 -185960182 - Tigger5 DNA MER2_type 0 2323 1 224 0 65 0 chr6 3319612 3319643 -185959911 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2117 128 3 0 chr6 3319685 3319981 -185959573 + AluSx SINE Alu 1 297 -15 2471 74 0 0 chr6 3320577 3320874 -185958680 + AluSg SINE Alu 1 297 -13 1050 282 96 23 chr6 3321161 3321747 -185957807 - L1MC4a LINE L1 -297 5824 5266 363 314 84 58 chr6 3321768 3321994 -185957560 - L1MC4a LINE L1 -908 5238 5007 249 57 0 0 chr6 3322261 3322296 -185957258 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 2345 80 0 6 chr6 3322388 3322699 -185956855 + AluY SINE Alu 1 309 -2 822 202 52 31 chr6 3322744 3322937 -185956617 - MER63A DNA MER1_type -2 208 12 2454 79 0 13 chr6 3322979 3323284 -185956270 + AluSx SINE Alu 1 301 -11 2509 88 0 0 chr6 3323294 3323602 -185955952 + AluY SINE Alu 1 308 -3 467 301 33 99 chr6 3323634 3323996 -185955558 - L2 LINE L2 -25 3247 2910 282 290 23 76 chr6 3324036 3324167 -185955387 - L2 LINE L2 -513 2801 2678 287 287 174 0 chr6 3324825 3324940 -185954614 - MIR3 SINE MIR -44 164 30 199 258 81 97 chr6 3325166 3325290 -185954264 + L2 LINE L2 2638 2759 -555 211 264 80 55 chr6 3325328 3325529 -185954025 + L2 LINE L2 2836 3041 -231 2310 90 3 7 chr6 3325682 3325981 -185953573 + AluSx SINE Alu 1 298 -14 190 293 146 24 chr6 3325999 3326122 -185953432 + MIR SINE MIR 46 183 -79 382 179 0 0 chr6 3327887 3327954 -185951600 - MER45 DNA AcHobo 0 1581 1515 2289 192 51 2 chr6 3328738 3329207 -185950347 - L1MB3 LINE L1 -2 6181 5690 1852 157 42 37 chr6 3330252 3330455 -185949099 - MLT1B LTR MaLR -6 384 177 2474 76 0 3 chr6 3330455 3330756 -185948798 - AluSg SINE Alu -10 300 1 1852 157 42 37 chr6 3330756 3330934 -185948620 - MLT1B LTR MaLR -213 177 1 196 302 19 0 chr6 3331126 3331179 -185948375 + L2 LINE L2 2720 2773 -541 225 114 139 101 chr6 3331792 3331871 -185947683 + MER5B DNA MER1_type 21 102 -76 870 145 18 84 chr6 3331875 3332102 -185947452 + MER20 DNA MER1_type 8 219 0 1380 103 0 0 chr6 3333262 3333436 -185946118 + AluSq SINE Alu 129 302 -11 21 0 0 0 chr6 3333622 3333643 -185945911 + AT_rich Low_complexity Low_complexity 1 21 0 2355 78 0 38 chr6 3333674 3333994 -185945560 - AluY SINE Alu -3 308 1 240 233 0 17 chr6 3334604 3334664 -185944890 - L2 LINE L2 -14 3299 3241 2043 102 62 0 chr6 3334956 3335231 -185944323 + AluSq SINE Alu 3 294 -19 1698 158 80 19 chr6 3335335 3335696 -185943858 - MLT1B LTR MaLR 0 390 8 464 299 0 22 chr6 3335979 3336116 -185943438 + G-rich Low_complexity Low_complexity 3 136 0 2205 101 17 0 chr6 3336768 3337056 -185942498 - AluSg SINE Alu -17 293 1 216 0 0 0 chr6 3337057 3337081 -185942473 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2176 94 7 0 chr6 3337081 3337357 -185942197 - AluSx SINE Alu -34 278 1 1001 269 134 5 chr6 3337365 3337782 -185941772 - L1ME2 LINE L1 0 6164 5694 304 314 122 17 chr6 3339181 3339353 -185940201 + MIR SINE MIR 14 203 -59 2487 99 3 0 chr6 3340293 3340605 -185938949 - AluSp SINE Alu 0 313 1 2878 133 58 0 chr6 3341330 3341826 -185937728 - L1MB3 LINE L1 -10 6173 5649 429 218 0 0 chr6 3342429 3342516 -185937038 - MER103 DNA DNA -45 121 35 23 0 0 0 chr6 3342694 3342717 -185936837 + AT_rich Low_complexity Low_complexity 1 23 0 321 354 82 10 chr6 3344125 3344331 -185935223 - MIR SINE MIR -26 236 16 186 143 0 0 chr6 3344699 3344734 -185934820 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 283 290 75 37 chr6 3345095 3345202 -185934352 + MIR SINE MIR 42 152 -56 403 301 74 25 chr6 3345575 3345738 -185933816 + MIR SINE MIR 86 256 -6 2604 60 7 0 chr6 3345806 3346107 -185933447 + AluY SINE Alu 1 303 -8 31 26 0 0 chr6 3346257 3346295 -185933259 + AT_rich Low_complexity Low_complexity 1 38 0 191 286 0 0 chr6 3346448 3346497 -185933057 - L2 LINE L2 -76 3237 3189 1149 230 0 9 chr6 3346497 3346723 -185932831 - MER58A DNA MER1_type 0 224 1 209 146 21 0 chr6 3347762 3347810 -185931744 + CT-rich Low_complexity Low_complexity 2 50 0 283 272 41 35 chr6 3349683 3349852 -185929702 - L1ME4a LINE L1 0 6121 5952 562 272 32 10 chr6 3349893 3350175 -185929379 - L1ME4a LINE L1 -251 5870 5541 2028 156 16 0 chr6 3350260 3350567 -185928987 - AluSx SINE Alu 0 312 1 212 287 111 37 chr6 3351390 3351498 -185928056 - L2 LINE L2 -614 2700 2585 256 167 26 64 chr6 3351556 3351634 -185927920 - LTR33A LTR ERVL -9 514 440 198 280 0 32 chr6 3352090 3352183 -185927371 - L2 LINE L2 -738 2576 2487 181 385 0 51 chr6 3352345 3352423 -185927131 + L3b LINE CR1 1503 1576 -7 635 239 31 6 chr6 3353694 3353853 -185925701 - MER5A DNA MER1_type -26 163 1 642 266 74 29 chr6 3356232 3356476 -185923078 - MIR SINE MIR 0 262 8 207 0 0 0 chr6 3356645 3356668 -185922886 + (T)n Simple_repeat Simple_repeat 1 23 0 501 283 0 7 chr6 3358167 3358312 -185921242 + LTR33 LTR ERVL 367 510 -11 1792 213 82 25 chr6 3358312 3358790 -185920764 - MLT1D LTR MaLR 0 505 1 348 289 72 62 chr6 3358911 3359105 -185920449 - MIR SINE MIR -44 218 23 915 197 118 9 chr6 3359752 3359980 -185919574 - L1MB8 LINE L1 0 6178 5926 197 273 0 0 chr6 3360827 3360871 -185918683 + MIR3 SINE MIR 117 160 -48 355 313 44 6 chr6 3362710 3362870 -185916684 + MER117 DNA MER1_type 1 166 -31 1197 181 59 0 chr6 3363212 3363416 -185916138 - MER58A DNA MER1_type -8 216 1 333 118 0 0 chr6 3364812 3364863 -185914691 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr6 3365165 3365186 -185914368 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 3365744 3365774 -185913780 + AT_rich Low_complexity Low_complexity 1 30 0 2052 99 7 17 chr6 3366109 3366411 -185913143 - AluSg SINE Alu -11 299 1 259 393 27 0 chr6 3367395 3367507 -185912047 + MIR SINE MIR 33 147 -61 192 351 84 15 chr6 3369043 3369245 -185910309 - L2 LINE L2 -544 2770 2555 192 311 67 25 chr6 3369441 3369560 -185909994 - L2 LINE L2 -935 2379 2256 317 107 58 223 chr6 3369961 3370024 -185909530 - L1MB4 LINE L1 0 6180 6145 2167 111 13 0 chr6 3370024 3370330 -185909224 - AluSx SINE Alu -2 310 1 317 107 58 223 chr6 3370330 3370387 -185909167 - L1MB4 LINE L1 -35 6145 6080 277 286 77 16 chr6 3370705 3370831 -185908723 + MIR SINE MIR 34 162 -46 2245 78 7 3 chr6 3371212 3371505 -185908049 + AluSq SINE Alu 1 294 -19 1686 166 3 16 chr6 3372327 3372634 -185906920 - AluJo SINE Alu -1 311 9 189 0 0 0 chr6 3372914 3372935 -185906619 + (A)n Simple_repeat Simple_repeat 1 21 0 292 263 19 113 chr6 3373737 3373897 -185905657 - MIR SINE MIR -1 261 117 330 246 228 0 chr6 3374080 3374194 -185905360 - MIR SINE MIR -41 221 82 3689 127 93 63 chr6 3374198 3374814 -185904740 - LTR1 LTR ERV1 0 785 140 2097 95 41 0 chr6 3374814 3375109 -185904445 - AluSc SINE Alu -2 307 1 3689 127 93 63 chr6 3375109 3375242 -185904312 - LTR1 LTR ERV1 -645 140 13 258 330 0 10 chr6 3376664 3376767 -185902787 - L2 LINE L2 -527 2787 2686 644 245 57 10 chr6 3377859 3378051 -185901503 + MER3 DNA MER1_type 1 201 -8 1598 280 167 17 chr6 3378090 3378951 -185900603 + L2 LINE L2 1744 2733 -581 294 221 139 25 chr6 3378962 3379084 -185900470 - MLT1J LTR MaLR 0 511 376 750 274 135 0 chr6 3379120 3379350 -185900204 - MLT1J LTR MaLR -250 261 1 498 309 88 62 chr6 3379457 3379842 -185899712 + L2 LINE L2 2919 3313 0 234 242 81 0 chr6 3379925 3379987 -185899567 - MIR3 SINE MIR -10 198 132 * 410 353 64 5 chr6 3379978 3380165 -185899389 + L3 LINE CR1 403 600 -977 3127 158 19 73 chr6 3381958 3382094 -185897460 - L1MB3 LINE L1 -3 6180 6038 2192 108 0 0 chr6 3382094 3382401 -185897153 - AluSq SINE Alu -3 310 4 3127 158 19 73 chr6 3382401 3383019 -185896535 - L1MB3 LINE L1 -145 6038 5467 241 226 0 0 chr6 3383057 3383110 -185896444 + (CATTT)n Simple_repeat Simple_repeat 4 56 0 1865 231 104 29 chr6 3383679 3384238 -185895316 - L1MD3 LINE L1 -21 7974 7374 198 319 52 9 chr6 3384625 3384741 -185894813 + MIR SINE MIR 33 153 -55 2865 161 38 21 chr6 3385811 3385858 -185893696 - L1MB3 LINE L1 -4 6179 6134 1847 156 0 10 chr6 3385858 3386159 -185893395 - AluSx SINE Alu -14 298 1 2865 161 38 21 chr6 3386159 3386669 -185892885 - L1MB3 LINE L1 -49 6134 5613 269 355 89 23 chr6 3387444 3387658 -185891896 + L2 LINE L2 2683 2910 -404 363 271 126 37 chr6 3388126 3388320 -185891234 - L1ME3A LINE L1 -204 5960 5754 1125 215 42 0 chr6 3388584 3388798 -185890756 - MER58A DNA MER1_type -1 223 1 476 301 47 28 chr6 3389620 3389833 -185889721 - MIR SINE MIR -26 236 20 877 307 65 3 chr6 3390383 3390692 -185888862 + MLT1I LTR MaLR 82 409 0 192 179 0 0 chr6 3391402 3391441 -185888113 + (CA)n Simple_repeat Simple_repeat 1 39 0 2493 64 0 3 chr6 3392431 3392744 -185886810 + AluSq SINE Alu 1 312 -1 1221 192 42 0 chr6 3394119 3394333 -185885221 - MER58A DNA MER1_type -1 223 1 192 267 67 44 chr6 3394664 3394754 -185884800 + L2 LINE L2 3222 3313 0 913 227 96 9 chr6 3397293 3397522 -185882032 + MIR SINE MIR 3 251 -11 431 136 19 29 chr6 3397686 3397789 -185881765 + CT-rich Low_complexity Low_complexity 2 103 0 2839 180 39 2 chr6 3397903 3398443 -185881111 - MER68 LTR ERV1 0 562 3 694 251 72 43 chr6 3399234 3399397 -185880157 + MIR SINE MIR 21 195 -67 727 157 51 56 chr6 3399397 3399575 -185879979 + MER104 DNA MER2_type 1 177 -3 694 251 72 43 chr6 3399575 3399646 -185879908 + MIR SINE MIR 195 262 0 412 324 63 0 chr6 3399701 3399843 -185879711 - MIR SINE MIR -52 210 60 1122 213 102 22 chr6 3399851 3400166 -185879388 + MER58B DNA MER1_type 1 340 -1 189 182 0 0 chr6 3400235 3400268 -185879286 + L2 LINE L2 3272 3304 -9 2253 92 0 0 chr6 3401686 3401981 -185877573 - AluSx SINE Alu -17 295 1 295 195 104 26 chr6 3403709 3403786 -185875768 + MIR SINE MIR 66 148 -114 271 277 161 0 chr6 3404851 3404981 -185874573 - MIR SINE MIR -32 230 80 2492 86 0 13 chr6 3405028 3405341 -185874213 - AluSg SINE Alu -1 309 1 2359 109 0 10 chr6 3406040 3406353 -185873201 - AluSx SINE Alu -2 310 1 250 357 27 32 chr6 3406968 3407153 -185872401 + MIR SINE MIR 33 216 -46 2369 93 6 3 chr6 3408957 3409268 -185870286 - AluSx SINE Alu 0 312 1 234 224 66 40 chr6 3409305 3409381 -185870173 + MER103 DNA DNA 56 133 -33 1634 138 41 3 chr6 3411099 3411418 -185868136 - L1MB3 LINE L1 0 6183 5853 2337 198 8 25 chr6 3411479 3411990 -185867564 - L1MB3 LINE L1 -328 5855 5354 3309 182 9 12 chr6 3412643 3413308 -185866246 - L1MB1 LINE L1 -1 6167 5505 252 0 0 0 chr6 3414305 3414333 -185865221 + (T)n Simple_repeat Simple_repeat 1 28 0 181 221 52 52 chr6 3414516 3414593 -185864961 + MIR SINE MIR 125 201 -61 212 128 0 21 chr6 3415388 3415435 -185864119 + (CCCCCT)n Simple_repeat Simple_repeat 3 48 0 323 296 0 0 chr6 3418966 3419064 -185860490 + (TG)n Simple_repeat Simple_repeat 1 98 0 585 199 0 0 chr6 3419082 3419253 -185860301 + (TG)n Simple_repeat Simple_repeat 2 172 0 1137 220 49 70 chr6 3420860 3421205 -185858349 - MER58B DNA MER1_type 0 341 4 466 209 147 63 chr6 3421210 3421401 -185858153 - MER112 DNA MER1_type -1 259 53 261 262 64 78 chr6 3423319 3423460 -185856094 - L2 LINE L2 -76 3237 3099 315 241 93 65 chr6 3424390 3424498 -185855056 + L1ME4a LINE L1 5927 6037 -84 23 33 0 0 chr6 3424923 3424953 -185854601 + AT_rich Low_complexity Low_complexity 1 30 0 2309 103 0 0 chr6 3425121 3425413 -185854141 - AluSg SINE Alu -16 294 3 264 59 0 0 chr6 3426875 3426909 -185852645 + (CA)n Simple_repeat Simple_repeat 2 35 0 300 302 60 19 chr6 3429271 3429536 -185850018 - L1MC4 LINE L1 -1 8041 7766 1691 104 146 0 chr6 3430131 3430391 -185849163 + AluSx SINE Alu 1 298 -14 310 266 179 39 chr6 3430474 3430703 -185848851 - L2 LINE L2 -61 3252 2992 1708 222 182 27 chr6 3430711 3431189 -185848365 - LTR12 LTR ERV1 0 714 163 1850 146 110 55 chr6 3431200 3431673 -185847881 - pTR5 LTR ERV1 -1197 1241 743 1586 121 9 9 chr6 3431695 3431918 -185847636 - AluSx SINE Alu -37 275 53 5420 138 287 36 chr6 3433529 3434886 -185844668 - pTR5 LTR ERV1 0 2438 742 555 318 23 17 chr6 3435026 3435199 -185844355 - L2 LINE L2 0 3272 3099 246 190 17 0 chr6 3435303 3435361 -185844193 + MER5A DNA MER1_type 48 106 -83 225 317 77 19 chr6 3435638 3435742 -185843812 + MIR SINE MIR 108 217 -45 2336 111 0 0 chr6 3435792 3436090 -185843464 - AluSc SINE Alu -11 298 1 222 305 29 48 chr6 3436969 3437074 -185842480 - MIR SINE MIR -60 202 100 21 82 0 0 chr6 3437181 3437230 -185842324 + AT_rich Low_complexity Low_complexity 1 49 0 2138 125 0 7 chr6 3437377 3437674 -185841880 - AluSx SINE Alu -17 295 1 2350 104 0 0 chr6 3438172 3438471 -185841083 - AluSc SINE Alu -8 301 3 2967 156 17 13 chr6 3438880 3438898 -185840656 - LTR45 LTR ERV1 -2 523 507 2371 101 59 0 chr6 3438898 3439254 -185840300 - MER51B LTR ERV1 0 377 1 2967 156 17 13 chr6 3439254 3439756 -185839798 - LTR45 LTR ERV1 -18 507 1 23 0 0 0 chr6 3440666 3440689 -185838865 + GC_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 3441139 3441184 -185838370 + GC_rich Low_complexity Low_complexity 1 45 0 30 45 0 0 chr6 3441268 3441312 -185838242 + GC_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 3442138 3442166 -185837388 + GC_rich Low_complexity Low_complexity 1 28 0 261 284 52 26 chr6 3443435 3443551 -185836003 + L3 LINE CR1 1178 1296 -281 296 264 66 36 chr6 3444559 3444726 -185834828 + LTR50 LTR ERVL 320 672 -32 929 233 197 46 chr6 3444966 3445769 -185833785 - L2 LINE L2 -3 3310 2346 302 369 87 34 chr6 3447304 3447510 -185832044 + MIR SINE MIR 16 232 -30 2212 108 0 10 chr6 3447883 3448188 -185831366 + AluSx SINE Alu 8 309 -3 497 195 188 0 chr6 3452386 3452535 -185827019 - MER53 DNA DNA -7 182 6 255 69 0 155 chr6 3453815 3453873 -185825681 - MADE1 DNA Mariner -1 79 31 22 0 0 0 chr6 3454081 3454103 -185825451 + AT_rich Low_complexity Low_complexity 1 22 0 3273 152 20 0 chr6 3456970 3457529 -185822025 - L1MA6 LINE L1 -1 6299 5730 1614 109 31 97 chr6 3457529 3457786 -185821768 - L1MA6 LINE L1 -1263 4883 4653 1739 160 87 0 chr6 3457786 3458073 -185821481 - AluJb SINE Alu 0 312 1 1614 109 31 97 chr6 3458073 3458165 -185821389 - L1MA6 LINE L1 -1493 4653 4557 184 255 0 0 chr6 3458692 3458739 -185820815 + L3 LINE CR1 781 827 -750 1472 286 42 25 chr6 3460724 3461323 -185818231 + L1MC4a LINE L1 7072 7680 -128 484 192 233 17 chr6 3461824 3461996 -185817558 - MIR SINE MIR -14 248 40 269 311 44 0 chr6 3464157 3464247 -185815307 - MIR3 SINE MIR -11 197 104 1699 87 79 0 chr6 3464480 3464732 -185814822 + L1PB2 LINE L1 5878 6149 -2 300 269 46 28 chr6 3468795 3468903 -185810651 + L2 LINE L2 3204 3313 0 21 36 0 0 chr6 3470218 3470246 -185809308 + AT_rich Low_complexity Low_complexity 1 28 0 652 262 51 33 chr6 3471065 3471398 -185808156 - Charlie8 DNA MER1_type -2141 276 78 7889 147 81 64 chr6 3471547 3473317 -185806237 + pTR5 LTR ERV1 65 2424 -14 2326 185 43 13 chr6 3474021 3474552 -185805002 - MER74A LTR ERVL -4 554 8 1528 188 4 15 chr6 3476196 3476468 -185803086 - AluJo SINE Alu -14 298 30 505 267 125 11 chr6 3476472 3476648 -185802906 - L2 LINE L2 -1047 2267 2072 594 292 42 17 chr6 3476775 3477011 -185802543 - L2 LINE L2 -1230 2084 1843 1002 265 138 19 chr6 3477011 3477547 -185802007 - L1MC4a LINE L1 -1690 6118 5519 325 292 42 33 chr6 3477552 3477672 -185801882 - L1MC/D LINE L1 -2046 5762 5642 326 240 53 59 chr6 3477728 3478008 -185801546 - MLT1H LTR MaLR 0 549 229 249 211 0 18 chr6 3478121 3478178 -185801376 - MLT1H LTR MaLR -488 61 6 22 0 0 0 chr6 3478442 3478464 -185801090 + AT_rich Low_complexity Low_complexity 1 22 0 271 305 0 24 chr6 3478946 3479028 -185800526 - L2 LINE L2 -17 3255 3176 249 340 19 10 chr6 3479498 3479601 -185799953 + L2 LINE L2 3207 3310 -3 221 233 0 0 chr6 3480382 3480425 -185799129 + CT-rich Low_complexity Low_complexity 4 46 0 333 0 0 0 chr6 3480428 3480465 -185799089 + (CA)n Simple_repeat Simple_repeat 2 38 0 971 164 13 6 chr6 3480580 3480739 -185798815 - AluJb SINE Alu -19 293 134 2214 121 3 6 chr6 3481066 3481380 -185798174 - AluSq SINE Alu 0 313 1 1077 76 8 0 chr6 3481383 3481515 -185798039 - AluSq/x SINE Alu -179 133 1 667 304 65 5 chr6 3481568 3481785 -185797769 + MIR SINE MIR 2 231 -31 321 331 99 36 chr6 3483048 3483350 -185796204 - L2 LINE L2 -43 3229 2909 1380 189 34 34 chr6 3483412 3483703 -185795851 + AluJo SINE Alu 1 291 -21 344 345 31 11 chr6 3484919 3485110 -185794444 + L2 LINE L2 727 921 -2393 310 221 9 124 chr6 3485130 3485243 -185794311 + L1MC4 LINE L1 6607 6706 -1336 * 344 300 0 11 chr6 3485185 3485275 -185794279 - L1MC4 LINE L1 -1340 6702 6614 4440 190 54 37 chr6 3485288 3486793 -185792761 - L1MB3 LINE L1 -6 6177 4627 287 278 268 20 chr6 3486799 3486997 -185792557 + L2 LINE L2 923 1169 -2145 233 378 0 0 chr6 3487032 3487114 -185792440 - MIR SINE MIR 0 262 181 601 329 133 16 chr6 3487122 3487624 -185791930 + L2 LINE L2 1165 1725 -1589 959 310 64 37 chr6 3487627 3488298 -185791256 + L2 LINE L2 2328 3015 -257 2193 140 65 0 chr6 3488312 3488684 -185790870 - MSTA LTR MaLR 0 428 33 895 98 379 15 chr6 3488684 3488887 -185790667 + LTR12 LTR ERV1 6 282 -432 338 242 11 0 chr6 3488894 3488985 -185790569 + LTR30 LTR ERV1 552 643 -79 682 106 10 0 chr6 3488985 3489089 -185790465 + LTR12 LTR ERV1 480 584 -130 206 329 13 26 chr6 3489288 3489364 -185790190 + L2 LINE L2 3179 3253 -19 215 274 6 0 chr6 3489930 3490105 -185789449 + (CA)n Simple_repeat Simple_repeat 2 177 0 2476 200 58 97 chr6 3490422 3491178 -185788376 - MER50 LTR ERV1 -7 727 1 418 246 136 93 chr6 3491359 3491595 -185787959 - MIR SINE MIR 0 262 17 248 222 111 0 chr6 3491792 3491846 -185787708 + MER91A DNA MER1_type 123 182 -14 220 324 155 7 chr6 3491867 3492009 -185787545 + L2 LINE L2 3104 3266 -6 464 337 79 0 chr6 3492300 3492478 -185787076 + MIR SINE MIR 47 238 -24 206 184 102 0 chr6 3492842 3492891 -185786663 + L2 LINE L2 3012 3065 -248 1926 251 66 45 chr6 3492938 3493325 -185786229 - MER21B LTR ERV1 -124 739 329 3006 157 46 4 chr6 3493325 3493829 -185785725 + LTR45 LTR ERV1 1 525 0 1926 251 66 45 chr6 3493829 3494151 -185785403 - MER21B LTR ERV1 -534 329 15 363 299 45 19 chr6 3494171 3494328 -185785226 + L2 LINE L2 3120 3280 -33 3532 67 25 2 chr6 3494372 3494847 -185784707 - LTR19A LTR ERV1 0 486 1 30 27 0 0 chr6 3496445 3496482 -185783072 + AT_rich Low_complexity Low_complexity 1 37 0 625 116 87 43 chr6 3497046 3497184 -185782370 - L1MA4 LINE L1 -6 6294 6151 736 96 37 30 chr6 3497184 3497267 -185782287 + L1MA4 LINE L1 6032 6118 -182 2196 166 22 49 chr6 3497267 3497505 -185782049 - Tigger2a DNA MER2_type -2274 434 212 1856 184 0 3 chr6 3497505 3497798 -185781756 + AluJo SINE Alu 5 296 -16 2196 166 22 49 chr6 3497798 3498004 -185781550 - Tigger2a DNA MER2_type -2496 212 2 736 96 37 30 chr6 3498004 3498055 -185781499 + L1MA4 LINE L1 6118 6167 -133 2461 250 43 11 chr6 3498061 3498766 -185780788 - L1MC4a LINE L1 0 7808 7082 2075 92 64 27 chr6 3499728 3500023 -185779531 - AluSc SINE Alu -3 306 1 1874 231 97 24 chr6 3500065 3500645 -185778909 - L1MD3 LINE L1 -856 7139 6518 2323 89 0 0 chr6 3500667 3500958 -185778596 + AluY SINE Alu 1 291 -20 2652 39 0 13 chr6 3501491 3501802 -185777752 - AluY SINE Alu -4 307 1 341 285 68 50 chr6 3502339 3502854 -185776700 + L1MEd LINE L1 680 1203 -4916 318 301 47 25 chr6 3503001 3503237 -185776317 + L1MEd LINE L1 1376 1616 -4513 429 296 91 61 chr6 3503326 3504003 -185775551 + L1MEd LINE L1 1791 2533 -3596 1824 220 97 14 chr6 3505041 3505578 -185773976 + MLT1F1 LTR MaLR 1 567 0 250 262 63 87 chr6 3505717 3505843 -185773711 + L2 LINE L2 3140 3262 -10 1154 165 29 25 chr6 3505981 3506223 -185773331 + L1ME1 LINE L1 5808 6050 -116 305 281 22 0 chr6 3507005 3507094 -185772460 + MIR SINE MIR 117 207 -55 79 70 0 0 chr6 3507499 3507655 -185771899 + AT_rich Low_complexity Low_complexity 1 156 0 2131 99 11 3 chr6 3507719 3508002 -185771552 - AluSp SINE Alu -26 287 3 201 74 0 0 chr6 3508786 3508813 -185770741 + (CAATT)n Simple_repeat Simple_repeat 2 28 0 1412 193 24 17 chr6 3509764 3510087 -185769467 + L1MD3 LINE L1 7577 7995 0 395 381 55 25 chr6 3510399 3510803 -185768751 + L3 LINE CR1 114 529 -1048 1650 203 27 63 chr6 3510808 3511385 -185768169 + L1MB7 LINE L1 5792 6334 0 748 121 0 0 chr6 3511735 3511851 -185767703 + L1MA7 LINE L1 6159 6274 -17 582 338 103 11 chr6 3512536 3512903 -185766651 - LTR33A LTR ERVL -56 467 67 2248 233 26 6 chr6 3513892 3514433 -185765121 - L1M4 LINE L1 -1776 4370 3819 38741 84 12 7 chr6 3514549 3520669 -185758885 + L1PA6 LINE L1 11 6154 0 540 224 82 35 chr6 3521970 3522140 -185757414 + MER5B DNA MER1_type 1 178 0 288 350 10 0 chr6 3522181 3522281 -185757273 - MER81 DNA DNA -13 101 1 339 280 26 90 chr6 3522295 3522484 -185757070 - MER5B DNA MER1_type 0 178 2 926 158 0 23 chr6 3522542 3522713 -185756841 + MER5A DNA MER1_type 23 189 0 188 299 164 28 chr6 3523071 3523199 -185756355 + MIR SINE MIR 5 165 -97 393 22 0 0 chr6 3523199 3523245 -185756309 + (TAA)n Simple_repeat Simple_repeat 2 47 0 188 299 164 28 chr6 3523245 3523293 -185756261 + MIR SINE MIR 165 205 -57 7093 236 129 18 chr6 3523374 3523651 -185755903 - L1ME LINE L1 -634 5528 5283 212 59 29 0 chr6 3523651 3523685 -185755869 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 7093 236 129 18 chr6 3523685 3526228 -185753326 - L1ME LINE L1 -879 5283 2389 306 234 96 0 chr6 3526309 3526403 -185753151 - MIR SINE MIR -70 192 90 187 323 0 0 chr6 3528272 3528337 -185751217 - MIR SINE MIR -40 222 158 392 317 47 27 chr6 3528894 3529307 -185750247 + LTR67 LTR ERVL 24 522 -35 188 278 83 53 chr6 3529345 3529478 -185750076 - MIR SINE MIR -116 146 10 1515 211 95 91 chr6 3529785 3530513 -185749041 - L1MC5 LINE L1 -32 7929 7199 601 224 41 61 chr6 3530514 3530710 -185748844 + MER106A DNA MER1_type 2 193 -43 348 276 23 0 chr6 3531555 3531642 -185747912 - MIR SINE MIR -104 158 70 207 127 0 0 chr6 3531676 3531718 -185747836 - MIR SINE MIR -62 146 105 227 277 145 0 chr6 3532641 3532724 -185746830 - L2 LINE L2 -28 3285 3191 432 300 57 45 chr6 3532857 3533104 -185746450 + MIR SINE MIR 13 262 0 1226 226 84 45 chr6 3534180 3534561 -185744993 + MSTD LTR MaLR 1 396 0 304 310 35 44 chr6 3534644 3534847 -185744707 + L2 LINE L2 2885 3085 -187 579 285 124 24 chr6 3535372 3535621 -185743933 + MLT1L LTR MaLR 1 274 -341 433 256 89 28 chr6 3535734 3535914 -185743640 + MLT1L LTR MaLR 421 611 -4 799 187 238 51 chr6 3535940 3536255 -185743299 + MLT1A2 LTR MaLR 1 374 0 270 0 0 0 chr6 3536841 3536871 -185742683 + (TG)n Simple_repeat Simple_repeat 2 31 0 203 161 0 0 chr6 3537571 3537602 -185741952 + A-rich Low_complexity Low_complexity 5 35 0 213 330 54 18 chr6 3538510 3538622 -185740932 + L2 LINE L2 3153 3268 -4 378 285 93 0 chr6 3539009 3539160 -185740394 + MLT1L LTR MaLR 451 615 0 2327 109 24 24 chr6 3539255 3539630 -185739924 - THE1C LTR MaLR 0 375 1 3456 182 44 4 chr6 3539704 3540387 -185739167 + L1MB2 LINE L1 5460 6169 -2 631 199 93 9 chr6 3540678 3540861 -185738693 + MER20 DNA MER1_type 15 212 -7 440 279 93 0 chr6 3541145 3541285 -185738269 + MER3 DNA MER1_type 57 209 0 182 91 30 0 chr6 3541487 3541520 -185738034 + CT-rich Low_complexity Low_complexity 4 37 0 2336 78 113 0 chr6 3542943 3543278 -185736276 - MER51B LTR ERV1 -4 373 1 533 286 57 50 chr6 3543278 3543558 -185735996 - MLT1J LTR MaLR -1 510 229 2419 100 0 0 chr6 3544159 3544469 -185735085 + AluY SINE Alu 1 310 -1 2416 86 0 7 chr6 3544690 3544993 -185734561 + AluSx SINE Alu 1 301 -11 376 265 163 21 chr6 3545048 3545380 -185734174 - HAL1 LINE L1 -120 2387 2009 3810 239 49 23 chr6 3545858 3546310 -185733244 + MER45B DNA AcHobo 1 440 -1141 2619 48 0 6 chr6 3546310 3546623 -185732931 - AluY SINE Alu 0 311 1 3810 239 49 23 chr6 3546623 3546791 -185732763 + MER45B DNA AcHobo 440 602 -979 2150 106 7 3 chr6 3546791 3547109 -185732445 + AluSg SINE Alu 1 319 0 3810 239 49 23 chr6 3547109 3547491 -185732063 + MER45B DNA AcHobo 602 1032 -8 198 118 0 0 chr6 3548440 3548474 -185731080 + (A)n Simple_repeat Simple_repeat 1 34 0 4330 177 24 21 chr6 3549743 3549792 -185729762 - L1MB3 LINE L1 -2 6181 6134 2125 80 0 4 chr6 3549792 3550055 -185729499 - AluY SINE Alu -22 289 28 4330 177 24 21 chr6 3550055 3550892 -185728662 - L1MB3 LINE L1 -49 6134 5293 5169 152 43 6 chr6 3550911 3551825 -185727729 - L1MA8 LINE L1 -21 6270 5323 2134 184 0 13 chr6 3551833 3552224 -185727330 - L1MA8 LINE L1 -1779 4367 3982 2364 109 3 0 chr6 3552519 3552830 -185726724 + AluSx SINE Alu 1 312 0 2155 255 94 41 chr6 3552853 3554218 -185725336 - L1ME3A LINE L1 -34 6136 4699 846 193 59 5 chr6 3554444 3554631 -185724923 - L1MB4 LINE L1 -2 6178 5982 1891 166 3 7 chr6 3556013 3556309 -185723245 + AluJo SINE Alu 1 295 -17 336 322 76 6 chr6 3557308 3557479 -185722075 - MIR SINE MIR 0 262 80 431 332 68 14 chr6 3557511 3557731 -185721823 - L1MC4a LINE L1 -1910 5898 5667 248 278 0 0 chr6 3557731 3557821 -185721733 + L1MC4 LINE L1 6614 6703 -1339 * 273 239 0 22 chr6 3557787 3557879 -185721675 - L1MC4 LINE L1 -1339 6703 6614 336 346 32 43 chr6 3557896 3557986 -185721568 - L1MC4a LINE L1 -473 5648 5559 2814 188 26 6 chr6 3557986 3558530 -185721024 - L1MB5 LINE L1 -7 6167 5613 336 346 32 43 chr6 3558530 3558715 -185720839 - L1MC4a LINE L1 -562 5559 5420 233 310 14 0 chr6 3558741 3558812 -185720742 + MLT1L LTR MaLR 4 75 -540 289 295 69 42 chr6 3558867 3559069 -185720485 + MER20B DNA MER1_type 5 215 -4 1063 262 144 63 chr6 3559080 3559703 -185719851 - MER21B LTR ERV1 -167 696 23 245 338 0 0 chr6 3559733 3559804 -185719750 + MLT1J1 LTR MaLR 71 141 -305 302 237 72 10 chr6 3560022 3560119 -185719435 + MLT1L LTR MaLR 513 615 0 431 276 32 42 chr6 3560119 3560430 -185719124 - L1MC4a LINE L1 -752 5394 5087 4060 158 29 10 chr6 3560491 3561182 -185718372 + MER44D DNA MER2_type 2 705 0 515 305 110 13 chr6 3561292 3561528 -185718026 - MIR SINE MIR 0 262 4 2282 74 10 0 chr6 3561635 3561931 -185717623 + AluSx SINE Alu 1 299 -13 2046 218 35 29 chr6 3562125 3562612 -185716942 - MER74A LTR ERVL -46 512 23 2242 67 0 20 chr6 3562800 3563100 -185716454 - AluY SINE Alu -17 294 1 450 267 79 12 chr6 3563138 3563303 -185716251 + MLT1K LTR MaLR 389 564 -24 317 288 161 0 chr6 3564990 3565108 -185714446 - MIR SINE MIR -101 161 25 1698 144 0 0 chr6 3565463 3565733 -185713821 + AluJb SINE Alu 16 285 -27 332 83 73 0 chr6 3565752 3565848 -185713706 + (TA)n Simple_repeat Simple_repeat 1 103 0 300 277 36 0 chr6 3565876 3565959 -185713595 - L1MC4 LINE L1 -1333 6709 6624 518 157 0 0 chr6 3567206 3567289 -185712265 - MER53 DNA DNA 0 189 107 343 270 11 11 chr6 3567679 3567768 -185711786 - MER5A DNA MER1_type -83 106 18 230 109 0 219 chr6 3567833 3567897 -185711657 + MLT1B LTR MaLR 1 50 -340 1090 156 29 10 chr6 3567904 3568109 -185711445 + MLT1B LTR MaLR 182 390 0 2107 179 47 38 chr6 3568974 3569389 -185710165 + L1MB3 LINE L1 5711 6132 -51 2090 112 3 0 chr6 3569389 3569683 -185709871 + AluSq SINE Alu 1 295 -18 2107 179 47 38 chr6 3569683 3569736 -185709818 + L1MB3 LINE L1 6132 6183 0 2337 94 0 0 chr6 3570579 3570887 -185708667 + AluSp SINE Alu 1 308 -5 494 194 31 70 chr6 3571953 3572082 -185707472 - MER112 DNA MER1_type -9 251 128 250 222 19 0 chr6 3572135 3572189 -185707365 + MER4-int LTR ERV1 1111 1165 -5433 297 206 29 0 chr6 3572217 3572319 -185707235 + (TG)n Simple_repeat Simple_repeat 2 106 0 243 0 0 0 chr6 3572444 3572471 -185707083 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 1662 115 13 0 chr6 3572471 3572706 -185706848 - AluSx SINE Alu -32 280 43 1304 164 5 5 chr6 3574225 3574445 -185705109 + AluJo SINE Alu 73 292 -20 26 30 0 0 chr6 3575459 3575492 -185704062 + AT_rich Low_complexity Low_complexity 1 33 0 526 199 12 24 chr6 3577669 3577835 -185701719 + CT-rich Low_complexity Low_complexity 1 164 0 244 67 0 44 chr6 3578001 3578046 -185701508 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 1071 212 104 34 chr6 3578058 3578327 -185701227 - AluJo SINE Alu -13 289 2 978 191 27 45 chr6 3578346 3578566 -185700988 - MER20 DNA MER1_type -2 217 2 242 313 40 30 chr6 3578811 3578910 -185700644 + MIR SINE MIR 16 115 -93 5558 55 7 0 chr6 3578912 3579597 -185699957 - L1PA8 LINE L1 0 6172 5483 436 349 99 71 chr6 3580503 3580867 -185698687 - L2 LINE L2 -9 3263 2890 2127 112 0 7 chr6 3580983 3581287 -185698267 + AluSg SINE Alu 1 302 -8 363 325 21 5 chr6 3581507 3581698 -185697856 - L2 LINE L2 -824 2490 2297 274 308 143 0 chr6 3582115 3582206 -185697348 - L2 LINE L2 -20 3252 3149 922 44 0 0 chr6 3582207 3582320 -185697234 + AluY SINE Alu 183 295 -16 236 236 153 42 chr6 3583045 3583117 -185696437 - L2 LINE L2 -26 3246 3167 1450 177 18 201 chr6 3584845 3585573 -185693981 - MER45R DNA AcHobo -983 598 4 365 39 20 0 chr6 3586535 3586586 -185692968 + (TG)n Simple_repeat Simple_repeat 1 52 0 24 0 0 0 chr6 3587208 3587232 -185692322 + AT_rich Low_complexity Low_complexity 1 24 0 200 321 24 0 chr6 3587360 3587444 -185692110 + (TATG)n Simple_repeat Simple_repeat 1 86 0 2494 173 19 17 chr6 3588268 3588731 -185690823 - MLT2C2 LTR ERVL 0 464 1 16901 189 42 79 chr6 3588916 3592449 -185687105 + L1M2 LINE L1 8 3544 -3304 1237 209 17 30 chr6 3592449 3592751 -185686803 + AluJo SINE Alu 13 310 -2 16901 189 42 79 chr6 3592751 3594624 -185684930 + L1M2 LINE L1 3544 5483 -1365 1791 118 24 3 chr6 3594629 3594917 -185684637 + L1MA4A LINE L1 6006 6299 -4 671 288 123 5 chr6 3594931 3595150 -185684404 + MIR SINE MIR 5 249 -13 230 316 45 7 chr6 3596995 3597150 -185682404 + (CATATA)n Simple_repeat Simple_repeat 6 166 0 207 211 0 0 chr6 3597824 3597862 -185681692 + L2 LINE L2 3230 3267 -5 498 321 87 11 chr6 3597927 3598158 -185681396 + MIR SINE MIR 11 262 0 312 305 169 7 chr6 3598731 3598885 -185680669 - MER5A DNA MER1_type -4 185 7 23 0 0 0 chr6 3599166 3599189 -185680365 + AT_rich Low_complexity Low_complexity 1 23 0 226 345 54 40 chr6 3600583 3600731 -185678823 + MIR3 SINE MIR 19 168 -40 391 294 7 7 chr6 3600979 3601132 -185678422 + L1MEc LINE L1 1519 1671 -4725 336 299 56 0 chr6 3601133 3601240 -185678314 + L2 LINE L2 2624 2736 -578 22 0 0 0 chr6 3601287 3601309 -185678245 + AT_rich Low_complexity Low_complexity 1 22 0 1833 247 18 26 chr6 3601309 3601644 -185677910 - L1ME1 LINE L1 -12 6154 5823 2117 115 0 3 chr6 3601644 3601956 -185677598 - AluSq SINE Alu -2 311 1 1833 247 18 26 chr6 3601956 3602110 -185677444 - L1ME1 LINE L1 -343 5823 5669 610 267 10 61 chr6 3602126 3602401 -185677153 + L2 LINE L2 2748 3009 -304 277 306 209 0 chr6 3602481 3602615 -185676939 + MER5A DNA MER1_type 22 183 -6 402 240 20 89 chr6 3602622 3602768 -185676786 + L2 LINE L2 3142 3277 -36 467 270 8 0 chr6 3603862 3603988 -185675566 + MER103 DNA DNA 4 130 -36 735 142 0 108 chr6 3604035 3604183 -185675371 - FLAM_A SINE Alu -1 132 1 2066 120 7 3 chr6 3604512 3604812 -185674742 - AluSx SINE Alu -11 301 1 1712 184 70 6 chr6 3605071 3605414 -185674140 + MLT1A1 LTR MaLR 1 365 0 2706 214 72 89 chr6 3606454 3607119 -185672435 + L1MC5 LINE L1 6578 7211 -750 222 37 0 0 chr6 3607119 3607146 -185672408 + (GA)n Simple_repeat Simple_repeat 1 27 0 2706 214 72 89 chr6 3607146 3607841 -185671713 + L1MC5 LINE L1 7211 7916 -45 292 185 146 54 chr6 3608184 3608314 -185671240 - MIR SINE MIR -55 207 66 252 0 0 0 chr6 3609427 3609455 -185670099 + (GA)n Simple_repeat Simple_repeat 1 28 0 257 278 131 25 chr6 3609550 3609795 -185669759 + HAL1b LINE L1 313 583 -765 300 281 61 0 chr6 3609799 3609913 -185669641 + HAL1b LINE L1 617 737 -611 348 304 147 16 chr6 3610172 3610662 -185668892 + L1 LINE L1 4058 4611 -1535 225 244 58 12 chr6 3610937 3611023 -185668531 + L1 LINE L1 4943 5032 -1114 894 254 123 28 chr6 3611151 3611510 -185668044 - MLT1L LTR MaLR -16 599 207 265 279 196 6 chr6 3611978 3612157 -185667397 + L1ME LINE L1 5577 5789 -332 610 197 213 6 chr6 3612398 3612581 -185666973 - L1ME2 LINE L1 -1 6163 5943 184 321 0 0 chr6 3613003 3613056 -185666498 - L2 LINE L2 -81 3191 3139 2599 58 0 6 chr6 3614697 3615010 -185664544 + AluY SINE Alu 1 311 0 216 258 247 0 chr6 3615017 3615114 -185664440 + MIR SINE MIR 61 181 -81 2208 96 4 0 chr6 3616424 3616705 -185662849 - AluSq SINE Alu -18 295 14 2412 75 7 0 chr6 3618503 3618810 -185660744 + AluY SINE Alu 1 309 -2 203 281 22 52 chr6 3618997 3619132 -185660422 + L2 LINE L2 2967 3097 -216 231 189 0 0 chr6 3619198 3619251 -185660303 + (CA)n Simple_repeat Simple_repeat 2 54 0 239 294 103 46 chr6 3619276 3619470 -185660084 + L2 LINE L2 3095 3299 -14 268 297 89 10 chr6 3620227 3620328 -185659226 + MIR SINE MIR 44 152 -56 1225 75 149 11 chr6 3620328 3620502 -185659052 + AluJo SINE Alu 91 288 -24 191 203 219 0 chr6 3620551 3620615 -185658939 + MIR SINE MIR 89 166 -96 458 186 207 21 chr6 3621327 3621467 -185658087 + MER5A DNA MER1_type 24 189 0 267 180 41 25 chr6 3622931 3623053 -185656501 + GA-rich Low_complexity Low_complexity 2 125 0 242 222 14 14 chr6 3623064 3623136 -185656418 + GA-rich Low_complexity Low_complexity 2 73 0 196 319 9 26 chr6 3623290 3623403 -185656151 + L2 LINE L2 2630 2740 -574 265 150 0 0 chr6 3623409 3623449 -185656105 + Tigger3(Golem) DNA MER2_type 2989 3028 -1 194 304 0 14 chr6 3623676 3623745 -185655809 + MIR SINE MIR 189 256 -6 283 312 85 60 chr6 3624653 3625256 -185654298 + L1ME4a LINE L1 5282 5899 -222 704 254 59 21 chr6 3625256 3625574 -185653980 - HsTC2 DNA Tc2 0 1898 1283 295 223 11 53 chr6 3625585 3625679 -185653875 - HsTC2 DNA Tc2 -1796 102 13 634 192 52 159 chr6 3625737 3626045 -185653509 + MER21B LTR ERV1 23 297 -566 2113 169 60 0 chr6 3626150 3626552 -185653002 - MSTB LTR MaLR 0 426 1 354 98 0 0 chr6 3627230 3627281 -185652273 + (CA)n Simple_repeat Simple_repeat 1 51 0 1083 283 28 12 chr6 3627603 3627925 -185651629 + MLT1G1 LTR MaLR 63 389 -206 2338 112 80 39 chr6 3628176 3628481 -185651073 - MSTA LTR MaLR 0 428 100 2418 59 3 31 chr6 3628481 3628801 -185650753 + AluY SINE Alu 1 311 0 2338 112 80 39 chr6 3628801 3628906 -185650648 - MSTA LTR MaLR -328 100 1 327 25 0 0 chr6 3629646 3629686 -185649868 + (CA)n Simple_repeat Simple_repeat 2 41 0 2174 193 24 39 chr6 3629739 3630274 -185649280 + MER74A LTR ERVL 2 528 -30 264 173 0 0 chr6 3630307 3630359 -185649195 + L2 LINE L2 3259 3310 -3 520 261 30 18 chr6 3630490 3630655 -185648899 + MIR SINE MIR 78 244 -18 243 0 0 0 chr6 3631664 3631691 -185647863 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 408 191 0 0 chr6 3631760 3631844 -185647710 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 260 172 16 78 chr6 3632264 3632328 -185647226 + MLT1J LTR MaLR 3 62 -449 239 113 19 0 chr6 3632328 3632381 -185647173 + A-rich Low_complexity Low_complexity 1 54 0 324 231 33 11 chr6 3632465 3632556 -185646998 + MLT1J LTR MaLR 418 510 -1 247 209 0 0 chr6 3632705 3632748 -185646806 - MARNA DNA Mariner -78 508 466 * 595 311 40 20 chr6 3632742 3632993 -185646561 + MARNA DNA Mariner 131 386 -200 195 129 0 0 chr6 3633753 3633784 -185645770 + (T)n Simple_repeat Simple_repeat 1 31 0 262 355 0 28 chr6 3633786 3633927 -185645627 + L1MD2 LINE L1 202 338 -6202 335 250 11 11 chr6 3634158 3634250 -185645304 + L1MD2 LINE L1 808 899 -5631 1551 154 104 48 chr6 3634522 3634878 -185644676 - L1MC3 LINE L1 -64 7721 7346 3999 190 43 29 chr6 3634883 3635778 -185643776 - L1MB5 LINE L1 -9 6165 5266 1593 224 26 28 chr6 3635769 3636039 -185643515 - L1MA9 LINE L1 -38 6274 6004 * 369 0 0 0 chr6 3636039 3636080 -185643474 + (CA)n Simple_repeat Simple_repeat 2 42 0 1593 224 26 28 chr6 3636080 3636233 -185643321 - L1MA9 LINE L1 -308 6004 5852 * 1632 214 12 3 chr6 3636232 3636578 -185642976 - L1MB5 LINE L1 -867 5279 4931 402 185 0 0 chr6 3636858 3636939 -185642615 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 956 251 3 38 chr6 3637043 3637334 -185642220 - L1MB5 LINE L1 -2427 3719 3439 1368 228 24 19 chr6 3637340 3637833 -185641721 + L1MD2 LINE L1 1020 1515 -5028 635 166 0 93 chr6 3637907 3637934 -185641620 + AluJo SINE Alu 9 37 -275 2384 74 10 7 chr6 3637934 3638233 -185641321 - AluY SINE Alu -11 300 1 635 166 0 93 chr6 3638233 3638344 -185641210 + AluJo SINE Alu 37 134 -178 2323 253 24 28 chr6 3638345 3639271 -185640283 + L1MD2 LINE L1 2401 3275 -3265 * 5238 217 46 33 chr6 3639270 3642051 -185637503 + L1MD2 LINE L1 3237 6753 0 1285 174 0 126 chr6 3642326 3642643 -185636911 + AluJo SINE Alu 30 306 -6 1398 56 0 0 chr6 3642667 3642847 -185636707 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2424 58 0 3 chr6 3644510 3644803 -185634751 - AluY SINE Alu -18 293 2 403 130 26 0 chr6 3644866 3644943 -185634611 + CT-rich Low_complexity Low_complexity 3 81 0 354 168 76 84 chr6 3645045 3645096 -185634458 - MIR SINE MIR -61 147 97 1373 179 100 56 chr6 3645096 3645526 -185634028 - LTR7 LTR ERV1 0 450 2 354 168 76 84 chr6 3645526 3645593 -185633961 - MIR SINE MIR -111 97 30 2242 172 67 26 chr6 3646587 3647047 -185632507 + MLT2B1 LTR ERVL 1 479 -41 207 169 42 0 chr6 3647051 3647122 -185632432 + (TA)n Simple_repeat Simple_repeat 1 74 0 281 132 0 94 chr6 3647125 3647178 -185632376 + MLT2B1 LTR ERVL 350 520 0 1483 192 31 14 chr6 3647256 3647548 -185632006 - AluJo SINE Alu -15 297 1 358 309 63 29 chr6 3648013 3648220 -185631334 + L1M4 LINE L1 2200 2413 -3733 628 254 34 11 chr6 3648815 3648992 -185630562 + MIR SINE MIR 23 203 -59 569 157 52 11 chr6 3649043 3649315 -185630239 + (TAGA)n Simple_repeat Simple_repeat 1 283 0 231 170 0 0 chr6 3649323 3649370 -185630184 + GA-rich Low_complexity Low_complexity 2 48 0 1943 159 60 5 chr6 3649442 3649812 -185629742 + MLT1B LTR MaLR 1 390 0 329 325 44 10 chr6 3650594 3650797 -185628757 + LTR16C LTR ERVL 255 464 -27 306 264 94 6 chr6 3651167 3651326 -185628228 + L1MC4a LINE L1 5723 5895 -1913 2322 93 0 13 chr6 3651970 3652272 -185627282 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr6 3652822 3652849 -185626705 + AT_rich Low_complexity Low_complexity 1 27 0 257 313 30 20 chr6 3653952 3654051 -185625503 - MIR SINE MIR -108 154 55 1693 73 0 0 chr6 3655645 3655864 -185623690 - L1PA8 LINE L1 0 6172 5954 555 280 73 5 chr6 3655919 3656137 -185623417 - MIR SINE MIR 0 262 30 698 277 110 31 chr6 3657623 3658006 -185621548 + LTR16A LTR ERVL 26 438 -12 962 282 51 0 chr6 3658013 3658329 -185621225 - L2 LINE L2 -1105 2209 1878 1832 186 12 129 chr6 3658440 3659027 -185620527 - MLT2B1 LTR ERVL 0 520 3 2180 164 46 0 chr6 3659444 3659817 -185619737 + MLT1B LTR MaLR 1 390 0 2554 170 15 0 chr6 3659818 3660289 -185619265 + MLT1B-int LTR MaLR 2 479 -892 302 148 49 0 chr6 3660289 3660350 -185619204 + MLT1B LTR MaLR 327 390 0 2166 157 10 20 chr6 3660749 3661143 -185618411 + L1MA8 LINE L1 5894 6283 -8 280 370 159 14 chr6 3662139 3662428 -185617126 + L2 LINE L2 2521 2851 -463 579 264 121 100 chr6 3662478 3662803 -185616751 + L2 LINE L2 2886 3222 -50 2254 182 36 77 chr6 3662803 3663336 -185616218 + MLT2B2 LTR ERVL 5 515 0 579 264 121 100 chr6 3663336 3663389 -185616165 + L2 LINE L2 3222 3272 0 230 247 156 0 chr6 3663496 3663573 -185615981 + MIR SINE MIR 108 196 -66 250 231 39 0 chr6 3663862 3663914 -185615640 - L2 LINE L2 -50 3222 3169 605 280 6 34 chr6 3663959 3664134 -185615420 - MIR SINE MIR -59 203 34 1717 167 53 35 chr6 3664433 3664693 -185614861 - MER7A DNA MER2_type -2692 346 79 2229 108 10 0 chr6 3664693 3664988 -185614566 + AluSp SINE Alu 1 298 -15 1717 167 53 35 chr6 3664988 3665068 -185614486 - MER7A DNA MER2_type -2959 79 2 1000 194 0 0 chr6 3665134 3665320 -185614234 + MER58A DNA MER1_type 29 214 -10 209 108 27 0 chr6 3666365 3666421 -185613133 + (TTG)n Simple_repeat Simple_repeat 1 57 0 269 320 20 60 chr6 3666606 3666756 -185612798 - MIR SINE MIR -20 242 99 347 229 24 0 chr6 3666758 3666841 -185612713 - LTR16C LTR ERVL -2 489 405 378 252 107 0 chr6 3667359 3667462 -185612092 + MER91C DNA MER1_type 1 114 -26 345 319 62 35 chr6 3668535 3668792 -185610762 - L2 LINE L2 -182 3090 2827 359 244 99 14 chr6 3669153 3669372 -185610182 - L1ME LINE L1 -727 5437 5197 186 331 87 27 chr6 3669536 3669720 -185609834 + L2 LINE L2 2765 2959 -355 287 222 139 0 chr6 3670280 3670352 -185609202 + MLT1J2 LTR MaLR 315 396 -54 381 221 123 16 chr6 3670482 3670604 -185608950 - L2 LINE L2 0 3272 3138 2162 129 137 11 chr6 3671044 3671424 -185608130 + MSTA LTR MaLR 1 428 0 243 284 11 42 chr6 3671935 3672030 -185607524 + MIR3 SINE MIR 111 202 -6 252 185 0 0 chr6 3672668 3672722 -185606832 + GA-rich Low_complexity Low_complexity 4 57 0 303 301 0 42 chr6 3672730 3672873 -185606681 + HAL1b LINE L1 663 799 -549 1978 193 42 20 chr6 3672876 3673326 -185606228 - MLT1C LTR MaLR 0 467 8 649 232 87 68 chr6 3673331 3673641 -185605913 + HAL1b LINE L1 799 1114 -234 209 309 52 0 chr6 3675035 3675132 -185604422 - MIR3 SINE MIR -21 187 86 352 298 6 28 chr6 3675727 3675908 -185603646 + G-rich Low_complexity Low_complexity 2 178 0 384 260 0 44 chr6 3675933 3676114 -185603440 + G-rich Low_complexity Low_complexity 2 174 0 344 354 0 17 chr6 3676156 3676410 -185603144 + G-rich Low_complexity Low_complexity 1 249 0 280 235 16 53 chr6 3676388 3676632 -185602922 + GA-rich Low_complexity Low_complexity 1 234 0 * 185 293 120 15 chr6 3676777 3676910 -185602644 - L3 LINE CR1 -117 1460 1314 189 0 0 0 chr6 3676977 3676998 -185602556 + (TG)n Simple_repeat Simple_repeat 1 21 0 1781 184 3 0 chr6 3677225 3677508 -185602046 + AluJo SINE Alu 6 289 -23 2149 105 0 11 chr6 3677515 3677800 -185601754 + AluSc SINE Alu 1 282 -27 366 23 0 0 chr6 3677801 3677844 -185601710 + (CATA)n Simple_repeat Simple_repeat 2 44 0 189 333 54 23 chr6 3678523 3678652 -185600902 + L2 LINE L2 3180 3312 -1 21 0 0 0 chr6 3678963 3678984 -185600570 + AT_rich Low_complexity Low_complexity 1 21 0 688 147 0 0 chr6 3678985 3679080 -185600474 + AluJ/FLAM SINE Alu 2 96 -216 205 167 44 44 chr6 3679100 3679190 -185600364 + (TTATA)n Simple_repeat Simple_repeat 2 91 0 383 274 60 8 chr6 3679252 3679369 -185600185 - MIR SINE MIR -1 261 139 437 344 69 12 chr6 3680625 3680872 -185598682 - LTR16A1 LTR ERVL -15 442 182 2406 126 91 2 chr6 3681009 3681405 -185598149 - MSTB1 LTR MaLR 0 432 2 411 73 0 0 chr6 3681628 3681683 -185597871 + (TC)n Simple_repeat Simple_repeat 2 56 0 270 0 0 0 chr6 3681683 3681713 -185597841 + (CA)n Simple_repeat Simple_repeat 1 30 0 351 248 85 31 chr6 3682293 3682422 -185597132 + MIR SINE MIR 120 255 -7 1989 243 47 40 chr6 3682909 3683535 -185596019 - L1MC4 LINE L1 -1 8041 7408 1268 218 45 77 chr6 3683535 3683912 -185595642 - MLT1A1 LTR MaLR 0 365 1 1989 243 47 40 chr6 3683912 3684006 -185595548 - L1MC4 LINE L1 -634 7408 7316 261 304 74 66 chr6 3684022 3684310 -185595244 + L1MC/D LINE L1 4541 4834 -1312 2228 109 10 0 chr6 3684310 3684603 -185594951 + AluSg SINE Alu 1 296 -14 261 304 74 66 chr6 3684603 3684706 -185594848 + L1MC/D LINE L1 4834 4935 -1211 231 264 0 58 chr6 3685194 3685281 -185594273 + LTR33 LTR ERVL 438 519 -2 319 333 51 39 chr6 3685284 3685518 -185594036 + L1MC/D LINE L1 5067 5303 -843 998 281 102 14 chr6 3685533 3685975 -185593579 + L1MC/D LINE L1 5317 5797 -2011 275 314 118 0 chr6 3686037 3686190 -185593364 + MIR SINE MIR 92 262 0 299 259 27 27 chr6 3686430 3686542 -185593012 + CT-rich Low_complexity Low_complexity 2 113 0 366 295 104 23 chr6 3686569 3686742 -185592812 - MIR3 SINE MIR -17 191 5 907 145 36 67 chr6 3687639 3687832 -185591722 + LTR12 LTR ERV1 1 187 -527 1089 110 74 258 chr6 3687834 3688388 -185591166 + LTR12 LTR ERV1 55 506 -208 232 253 137 11 chr6 3688393 3688488 -185591066 + MLT1I LTR MaLR 31 137 -272 302 186 0 17 chr6 3688685 3688744 -185590810 + MLT1I LTR MaLR 310 367 -42 674 250 166 73 chr6 3689377 3690050 -185589504 - HAL1 LINE L1 -124 2383 1648 507 267 47 26 chr6 3690099 3690331 -185589223 - HAL1 LINE L1 -957 1550 1314 393 315 27 0 chr6 3690623 3690734 -185588820 - MIR SINE MIR -71 191 78 195 129 0 0 chr6 3690777 3690808 -185588746 + (TTC)n Simple_repeat Simple_repeat 2 32 0 275 303 56 43 chr6 3690809 3690971 -185588583 + L1M4c LINE L1 1323 1486 -4898 2640 49 0 0 chr6 3691613 3691920 -185587634 + AluY SINE Alu 1 307 -4 1621 135 4 0 chr6 3692440 3692669 -185586885 - MER30 DNA MER1_type 0 230 1 313 255 38 38 chr6 3693040 3693146 -185586408 + MIR SINE MIR 102 207 -55 1617 180 62 36 chr6 3693686 3694022 -185585532 + MER74A LTR ERVL 125 475 -83 2068 122 0 21 chr6 3694022 3694331 -185585223 - AluSp SINE Alu 0 303 1 1617 180 62 36 chr6 3694331 3694377 -185585177 + MER74A LTR ERVL 475 518 -40 288 115 19 19 chr6 3694598 3694650 -185584904 - MLT1A2-int LTR MaLR -1679 56 5 951 198 58 133 chr6 3694650 3695050 -185584504 - MLT1A2 LTR MaLR 0 374 5 2414 86 0 13 chr6 3695258 3695572 -185583982 - AluY SINE Alu -1 310 1 507 121 38 30 chr6 3696382 3696514 -185583040 + GA-rich Low_complexity Low_complexity 4 136 0 650 148 191 37 chr6 3697024 3697134 -185582420 - MER5A DNA MER1_type -2 187 95 1516 180 15 127 chr6 3697134 3697180 -185582374 - MLT1A1 LTR MaLR 0 365 315 2231 113 7 0 chr6 3697180 3697480 -185582074 - AluSp SINE Alu -11 302 1 1516 180 15 127 chr6 3697480 3697844 -185581710 - MLT1A1 LTR MaLR -50 315 1 650 148 191 37 chr6 3697844 3697895 -185581659 - MER5A DNA MER1_type -94 95 1 681 253 78 66 chr6 3697913 3698170 -185581384 + MIR SINE MIR 2 261 -1 513 260 31 0 chr6 3698261 3698388 -185581166 + MIR3 SINE MIR 47 177 -31 297 333 101 0 chr6 3698612 3698741 -185580813 - MIR SINE MIR -70 192 51 2323 114 0 19 chr6 3698932 3699247 -185580307 - AluSg SINE Alu -1 309 1 376 220 53 0 chr6 3699701 3699722 -185579832 + MLT1B LTR MaLR 97 115 -295 1983 148 25 0 chr6 3699722 3700006 -185579548 + AluSx SINE Alu 1 291 -21 376 220 53 0 chr6 3700006 3700091 -185579463 + MLT1B LTR MaLR 115 215 -195 1500 253 107 15 chr6 3700405 3700931 -185578623 + MER90 LTR ERV1 2 575 0 1336 231 86 29 chr6 3701654 3701898 -185577656 - MLT1C LTR MaLR 0 467 238 2071 150 18 48 chr6 3701898 3702218 -185577336 + L1MA5A LINE L1 5904 6211 -86 3162 121 77 16 chr6 3702218 3702715 -185576839 - MER1A DNA MER1_type 0 527 1 2071 150 18 48 chr6 3702715 3702794 -185576760 + L1MA5A LINE L1 6211 6291 -6 1336 231 86 29 chr6 3702794 3702991 -185576563 - MLT1C LTR MaLR -229 238 1 369 183 10 87 chr6 3703068 3703172 -185576382 - MER5A DNA MER1_type -80 109 14 346 191 296 0 chr6 3703289 3703404 -185576150 - MER5B DNA MER1_type 0 178 30 22 35 0 0 chr6 3704016 3704045 -185575509 + AT_rich Low_complexity Low_complexity 1 29 0 2252 116 0 0 chr6 3704047 3704340 -185575214 + AluSx SINE Alu 1 293 -19 204 328 115 33 chr6 3704443 3704565 -185574989 + L2 LINE L2 3104 3235 -37 300 267 22 11 chr6 3704584 3704674 -185574880 + L2 LINE L2 3176 3266 -6 246 264 28 0 chr6 3705571 3705643 -185573911 - L2 LINE L2 -333 2939 2866 244 88 0 0 chr6 3706107 3706141 -185573413 - Alu SINE Alu -16 286 253 3222 144 29 10 chr6 3706232 3706821 -185572733 - L1MB3 LINE L1 -84 6099 5500 387 276 67 8 chr6 3706821 3706955 -185572599 - MER5A DNA MER1_type -37 152 11 2347 102 0 0 chr6 3707371 3707665 -185571889 + AluSx SINE Alu 1 294 -18 255 330 64 0 chr6 3708496 3708590 -185570964 + L2 LINE L2 3180 3279 -34 401 259 106 55 chr6 3709586 3709760 -185569794 - MIR SINE MIR -62 146 20 183 280 80 0 chr6 3710117 3710167 -185569387 + L2 LINE L2 3241 3294 -19 298 363 74 7 chr6 3710201 3710336 -185569218 - L2 LINE L2 -4 3268 3125 479 217 16 50 chr6 3710510 3710658 -185568896 + MER21B LTR ERV1 16 197 -408 * 1195 273 31 41 chr6 3710631 3711019 -185568535 + MER21B LTR ERV1 98 481 -382 850 244 44 44 chr6 3711073 3711347 -185568207 + MER21B LTR ERV1 465 738 -125 315 246 49 0 chr6 3711375 3711497 -185568057 - LTR33A LTR ERVL -127 394 260 1131 182 70 134 chr6 3712063 3712170 -185567384 + MLT1B LTR MaLR 1 113 -277 2169 115 0 3 chr6 3712170 3712475 -185567079 + AluSx SINE Alu 1 304 -8 1131 182 70 134 chr6 3712475 3712784 -185566770 + MLT1B LTR MaLR 113 390 0 675 126 36 0 chr6 3712784 3712895 -185566659 + MLT1A2-int LTR MaLR 1 115 -1256 * 1765 173 8 37 chr6 3712886 3713170 -185566384 + MLT1A2-int LTR MaLR 260 535 -836 1958 95 0 18 chr6 3713170 3713478 -185566076 + AluSg SINE Alu 1 303 0 1765 173 8 37 chr6 3713478 3713544 -185566010 + MLT1A2-int LTR MaLR 535 601 -770 2330 182 25 0 chr6 3713565 3713972 -185565582 + MLT1A2-int LTR MaLR 1319 1735 0 1271 269 16 22 chr6 3713972 3714343 -185565211 + MLT1A2 LTR MaLR 1 369 -5 491 293 103 33 chr6 3714343 3714585 -185564969 - L2 LINE L2 -2507 807 549 1869 143 0 51 chr6 3715295 3715609 -185563945 + MER1B DNA MER1_type 29 326 -13 209 241 316 0 chr6 3715644 3715723 -185563831 - MER5A DNA MER1_type -15 174 71 257 303 55 0 chr6 3715958 3716067 -185563487 + L1MC4a LINE L1 5176 5290 -856 403 316 85 59 chr6 3716067 3716339 -185563215 + L1MC4a LINE L1 5708 5986 -1822 1803 152 27 3 chr6 3716439 3716736 -185562818 + AluJb SINE Alu 1 304 -8 332 212 288 30 chr6 3716943 3717075 -185562479 + MER5A DNA MER1_type 9 174 -15 197 306 32 0 chr6 3717337 3717399 -185562155 + L2 LINE L2 3208 3271 -1 24 32 0 0 chr6 3717533 3717564 -185561990 + AT_rich Low_complexity Low_complexity 1 31 0 2203 101 0 0 chr6 3718023 3718320 -185561234 + AluY SINE Alu 1 297 -14 2169 105 7 0 chr6 3718493 3718799 -185560755 - AluSq SINE Alu -5 308 1 2076 89 4 0 chr6 3719148 3719482 -185560072 + AluY SINE Alu 1 335 0 342 0 0 0 chr6 3719692 3719730 -185559824 + (TG)n Simple_repeat Simple_repeat 2 39 0 352 287 38 96 chr6 3720485 3720566 -185558988 + MIR3 SINE MIR 4 88 -120 2217 108 7 0 chr6 3720566 3720872 -185558682 - AluSp SINE Alu -5 308 1 352 287 38 96 chr6 3720872 3720999 -185558555 + MIR3 SINE MIR 88 200 -8 2366 87 0 0 chr6 3721660 3721972 -185557582 + AluSx SINE Alu 1 312 0 609 279 96 21 chr6 3722350 3722630 -185556924 + MARNA DNA Mariner 175 475 -111 310 254 62 102 chr6 3723517 3723650 -185555904 + MIR SINE MIR 1 124 -138 1065 193 88 99 chr6 3723650 3724105 -185555449 - LTR7 LTR ERV1 0 450 1 310 254 62 102 chr6 3724105 3724186 -185555368 + MIR SINE MIR 124 207 -55 492 279 0 64 chr6 3724783 3724955 -185554599 - MIR SINE MIR -65 197 37 2168 96 3 0 chr6 3725156 3725449 -185554105 - AluSp SINE Alu -18 295 2 328 262 10 19 chr6 3725724 3725827 -185553727 + MLT1K LTR MaLR 479 580 -8 1957 239 79 5 chr6 3726156 3726700 -185552854 + L1ME2 LINE L1 5588 6172 -6 2142 97 3 0 chr6 3726757 3727045 -185552509 + AluSp SINE Alu 2 290 -23 186 43 0 0 chr6 3727051 3727074 -185552480 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 252 264 153 0 chr6 3727289 3727361 -185552193 - L2 LINE L2 -1 3312 3230 1921 86 30 50 chr6 3727902 3728205 -185551349 + AluSp SINE Alu 1 297 -16 2123 105 3 0 chr6 3728297 3728591 -185550963 + AluSp SINE Alu 3 297 -16 1901 155 8 137 chr6 3728634 3728958 -185550596 - MSTB LTR MaLR 0 426 184 2390 57 0 0 chr6 3728958 3729257 -185550297 - AluY SINE Alu -12 299 1 1901 155 8 137 chr6 3729257 3729421 -185550133 - MSTB LTR MaLR -242 184 1 4063 136 120 104 chr6 3729470 3730059 -185549495 - L1MC3 LINE L1 0 7785 7095 245 273 39 0 chr6 3730059 3730136 -185549418 - MLT1F1 LTR MaLR -453 114 35 4063 136 120 104 chr6 3730136 3730554 -185549000 - L1MC3 LINE L1 -690 7095 6685 270 0 0 0 chr6 3731313 3731343 -185548211 + (TG)n Simple_repeat Simple_repeat 2 31 0 2136 82 21 7 chr6 3731352 3731643 -185547911 - AluSc SINE Alu -14 295 1 287 307 128 44 chr6 3732642 3732893 -185546661 - MER102b DNA MER1_type -3 338 67 556 234 101 32 chr6 3733168 3733356 -185546198 - L2 LINE L2 0 3313 3113 303 241 13 13 chr6 3734326 3734405 -185545149 - MIR SINE MIR 0 262 184 22 0 0 0 chr6 3735798 3735820 -185543734 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 3735919 3735953 -185543601 + (GGA)n Simple_repeat Simple_repeat 1 34 0 26 0 0 0 chr6 3736117 3736143 -185543411 + GC_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr6 3736264 3736305 -185543249 + GC_rich Low_complexity Low_complexity 1 41 0 325 297 44 100 chr6 3836963 3837481 -185442073 + L2 LINE L2 2390 2878 -436 26 0 0 0 chr6 3838501 3838527 -185441027 + AT_rich Low_complexity Low_complexity 1 26 0 2613 201 64 47 chr6 3838927 3839002 -185440552 - MER82 DNA MER2_type -1 652 580 1801 123 0 87 chr6 3839002 3839342 -185440212 - AluSx SINE Alu 0 313 1 2613 201 64 47 chr6 3839342 3839906 -185439648 - MER82 DNA MER2_type -73 580 1 954 273 67 4 chr6 3839916 3840169 -185439385 - LTR16C LTR ERVL 0 491 223 2139 121 3 7 chr6 3840181 3840487 -185439067 - AluY SINE Alu -6 305 1 536 213 89 30 chr6 3840488 3840657 -185438897 - L1ME LINE L1 -3292 2788 2610 3072 229 71 70 chr6 3840672 3841256 -185438298 - L1ME LINE L1 -3549 2531 1949 207 0 0 0 chr6 3841256 3841279 -185438275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3072 229 71 70 chr6 3841279 3841296 -185438258 - L1ME LINE L1 -4131 1949 1934 2247 114 114 75 chr6 3841296 3841338 -185438216 - MSTA LTR MaLR 0 428 389 1566 154 24 8 chr6 3841338 3841591 -185437963 + AluJb SINE Alu 23 279 -33 221 0 0 33 chr6 3841591 3841621 -185437933 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2247 114 114 75 chr6 3841621 3841989 -185437565 - MSTA LTR MaLR -38 390 1 3072 229 71 70 chr6 3841989 3843180 -185436374 - L1ME LINE L1 -4146 1934 742 2402 150 23 30 chr6 3843817 3844250 -185435304 - MSTB1 LTR MaLR 0 432 3 524 323 31 16 chr6 3844755 3844947 -185434607 - L2 LINE L2 -1 3312 3118 184 341 181 4 chr6 3844948 3845037 -185434517 - L2 LINE L2 -495 2819 2747 2496 205 58 5 chr6 3845037 3845485 -185434069 - MER70A LTR ERVL 0 472 1 184 341 181 4 chr6 3845485 3845621 -185433933 - L2 LINE L2 -567 2747 2554 234 281 114 24 chr6 3845806 3846016 -185433538 - L1M4 LINE L1 -2106 4040 3812 * 2525 166 53 0 chr6 3846001 3846177 -185433377 - L1MB3 LINE L1 -210 5973 5808 249 83 0 0 chr6 3846177 3846213 -185433341 + (TA)n Simple_repeat Simple_repeat 1 36 0 2525 166 53 0 chr6 3846213 3846487 -185433067 - L1MB3 LINE L1 -375 5808 5499 2189 116 0 0 chr6 3846493 3846794 -185432760 - AluY SINE Alu -9 302 2 3314 98 7 7 chr6 3846820 3847270 -185432284 - L1MA2 LINE L1 0 6304 5855 10792 175 52 14 chr6 3847270 3849458 -185430096 - L1MB3 LINE L1 -1282 4864 2593 1270 116 0 0 chr6 3849460 3849632 -185429922 - AluSq SINE Alu 0 313 142 233 171 0 0 chr6 3849764 3849805 -185429749 - HAL1 LINE L1 -109 2398 2358 3689 226 122 44 chr6 3849927 3851494 -185428060 - L1MDb LINE L1 -3979 2427 783 279 0 0 0 chr6 3851695 3851726 -185427828 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 222 128 0 0 chr6 3851872 3851911 -185427643 + (GA)n Simple_repeat Simple_repeat 1 39 0 375 302 17 26 chr6 3852773 3852889 -185426665 - MIR3 SINE MIR -9 199 85 356 250 190 9 chr6 3853419 3853535 -185426019 - L2 LINE L2 -2 3270 3134 273 252 39 87 chr6 3853785 3853888 -185425666 - L3 LINE CR1 -12 1565 1468 221 302 94 0 chr6 3854953 3855049 -185424505 + L2 LINE L2 3161 3265 -7 1890 191 26 63 chr6 3855416 3855846 -185423708 - MLT2D LTR ERVL 0 414 1 243 290 250 0 chr6 3856612 3856712 -185422842 + L2 LINE L2 3148 3272 0 2363 65 0 3 chr6 3856817 3857108 -185422446 + AluY SINE Alu 3 292 -19 217 339 45 18 chr6 3857170 3857282 -185422272 + L2 LINE L2 2643 2757 -557 2192 132 134 11 chr6 3858404 3858784 -185420770 + MSTA LTR MaLR 1 427 -1 314 333 117 26 chr6 3858848 3859112 -185420442 - L2 LINE L2 -9 3263 2976 1783 154 57 0 chr6 3859629 3859908 -185419646 - AluSg SINE Alu -14 296 2 1155 214 81 45 chr6 3860505 3860837 -185418717 + MER2 DNA MER2_type 1 344 0 939 210 16 0 chr6 3864066 3864252 -185415302 + MER2 DNA MER2_type 2 190 -155 2097 132 3 0 chr6 3864255 3864558 -185414996 - AluSq SINE Alu -9 304 1 324 224 0 15 chr6 3864582 3864649 -185414905 + MER2 DNA MER2_type 267 332 -13 1247 178 18 4 chr6 3864808 3865139 -185414415 - MER74A LTR ERVL -124 434 19 2095 85 0 0 chr6 3865139 3865398 -185414156 + AluSc SINE Alu 1 259 -50 191 61 30 0 chr6 3865408 3865441 -185414113 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 259 86 0 0 chr6 3865446 3865481 -185414073 - MER74C LTR ERVL -424 36 2 2552 241 58 24 chr6 3865484 3865692 -185413862 - L1ME3A LINE L1 -21 6149 5950 2006 146 7 0 chr6 3865692 3865994 -185413560 - AluSx SINE Alu -8 304 1 2552 241 58 24 chr6 3865994 3867209 -185412345 - L1ME3A LINE L1 -220 5950 4667 1257 215 15 4 chr6 3868330 3868616 -185410938 + AluJb SINE Alu 16 304 0 228 208 26 26 chr6 3868798 3868875 -185410679 - MER117 DNA MER1_type -5 192 116 326 277 28 35 chr6 3868945 3869086 -185410468 + MIR SINE MIR 8 147 -115 2077 210 33 9 chr6 3869086 3869539 -185410015 + MER101 LTR ERV1 11 474 0 2352 98 0 0 chr6 3869701 3869998 -185409556 - AluSq SINE Alu -10 303 7 207 0 0 0 chr6 3871208 3871231 -185408323 + (T)n Simple_repeat Simple_repeat 1 23 0 379 169 0 28 chr6 3871894 3871965 -185407589 + MER89-int LTR ERV1 2577 2645 -3686 1745 182 41 64 chr6 3872048 3872635 -185406919 + MER89-int LTR ERV1 1066 3012 -3319 705 213 70 39 chr6 3872559 3872789 -185406765 + LTR57-int LTR ERVL 1236 1472 -3871 * 2304 89 3 0 chr6 3872789 3873082 -185406472 + AluSg SINE Alu 1 294 -16 2402 97 0 0 chr6 3873223 3873531 -185406023 + AluSx SINE Alu 1 308 -4 883 169 15 36 chr6 3873581 3873776 -185405778 + MER89-int LTR ERV1 3540 3730 -2868 723 142 172 64 chr6 3873855 3874059 -185405495 + MER89-int LTR ERV1 3730 3955 -2643 865 114 57 0 chr6 3874060 3874183 -185405371 + FRAM SINE Alu 32 161 -15 2265 108 0 37 chr6 3874185 3874510 -185405044 + AluSq SINE Alu 1 313 0 2307 175 38 69 chr6 3874554 3875159 -185404395 + MER89-int LTR ERV1 4024 4609 -1722 265 277 15 46 chr6 3875145 3875275 -185404279 + MER89-int LTR ERV1 2727 2852 -1795 * 270 247 67 67 chr6 3876675 3876764 -185402790 + MER89-int LTR ERV1 6305 6393 -408 2414 150 32 47 chr6 3877331 3877804 -185401750 + MER101 LTR ERV1 9 474 0 1700 197 61 72 chr6 3878174 3878424 -185401130 + MLT1C LTR MaLR 1 245 -222 891 128 0 0 chr6 3878424 3878588 -185400966 + (GA)n Simple_repeat Simple_repeat 2 165 0 1700 197 61 72 chr6 3878588 3878809 -185400745 + MLT1C LTR MaLR 245 467 0 933 187 12 88 chr6 3879014 3879265 -185400289 - MER101 LTR ERV1 -111 363 132 370 184 167 18 chr6 3879688 3879802 -185399752 - L1ME4a LINE L1 -27 6374 6244 1459 265 121 24 chr6 3879830 3880542 -185399012 - HAL1 LINE L1 0 2507 1727 1364 258 94 28 chr6 3880539 3881281 -185398273 - L1ME4a LINE L1 -452 5998 5205 * 423 246 42 122 chr6 3881369 3881755 -185397799 - L1ME4a LINE L1 -3463 2963 2609 1570 173 43 34 chr6 3882135 3882458 -185397096 + MLT1B LTR MaLR 1 326 -64 581 98 0 80 chr6 3882457 3882569 -185396985 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 300 262 94 67 chr6 3882900 3883265 -185396289 - L1MDa LINE L1 -4813 1613 1232 264 285 102 0 chr6 3883259 3883396 -185396158 - L1MDa LINE L1 -5069 1347 1197 * 243 211 53 123 chr6 3883510 3883624 -185395930 - MLT1H LTR MaLR -13 536 431 5121 83 25 3 chr6 3883743 3884419 -185395135 - LTR8 LTR ERV1 0 691 1 313 258 78 31 chr6 3884443 3884571 -185394983 - MLT1H LTR MaLR -365 184 51 25 0 0 0 chr6 3884620 3884645 -185394909 + AT_rich Low_complexity Low_complexity 1 25 0 873 237 118 0 chr6 3884787 3885015 -185394539 - MLT1E1 LTR MaLR -2 652 398 547 265 33 17 chr6 3885343 3885524 -185394030 - MIR SINE MIR 0 262 79 884 166 61 55 chr6 3885526 3885707 -185393847 + LTR54 LTR ERV1 2 183 -327 813 230 19 5 chr6 3885730 3885939 -185393615 + LTR54 LTR ERV1 299 510 0 2109 100 19 59 chr6 3886637 3886957 -185392597 - AluSx SINE Alu -5 307 1 184 308 39 51 chr6 3886973 3887129 -185392425 + MIR SINE MIR 1 154 -108 27 81 0 0 chr6 3887169 3887231 -185392323 + AT_rich Low_complexity Low_complexity 1 62 0 4147 109 148 110 chr6 3888848 3890213 -185389341 - pTR5 LTR ERV1 0 2438 742 231 173 77 0 chr6 3891835 3891887 -185387667 - L1 LINE L1 -3715 2431 2376 8012 14 0 0 chr6 3891893 3892961 -185386593 - L1PA2 LINE L1 -4 6151 5084 1859 175 34 0 chr6 3893247 3893544 -185386010 + AluSx SINE Alu 1 307 -5 1467 143 3 73 chr6 3893544 3893830 -185385724 - MER2 DNA MER2_type -79 266 1 8389 109 41 6 chr6 3894204 3895460 -185384094 + HSMAR2 DNA Mariner 2 1301 -1 22 0 0 0 chr6 3895585 3895607 -185383947 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 73 32 chr6 3895652 3895776 -185383778 - L1MC/D LINE L1 -2159 5883 5755 680 272 68 33 chr6 3895891 3896351 -185383203 - L1MC/D LINE L1 -448 5722 5255 598 120 16 72 chr6 3896434 3896488 -185383066 - L1MB2 LINE L1 -5 6166 6111 1913 84 4 4 chr6 3896488 3896763 -185382791 - L1MA2 LINE L1 0 6304 6030 598 120 16 72 chr6 3896763 3896833 -185382721 - L1MB2 LINE L1 -60 6111 6049 44844 38 4 1 chr6 3896881 3903002 -185376552 - L1PA4 LINE L1 0 6155 13 594 256 42 30 chr6 3903005 3903267 -185376287 - L1MC/D LINE L1 -999 5147 4883 663 299 119 3 chr6 3903340 3903634 -185375920 + LTR16C LTR ERVL 71 398 -93 1633 189 4 0 chr6 3903704 3903968 -185375586 - AluJo SINE Alu -47 265 1 614 164 8 0 chr6 3905456 3905578 -185373976 + CT-rich Low_complexity Low_complexity 4 126 0 1560 170 56 35 chr6 3905665 3905953 -185373601 - AluJo SINE Alu -18 294 1 198 265 20 0 chr6 3906943 3906992 -185372562 + L2 LINE L2 3247 3296 -17 1848 175 153 0 chr6 3907608 3908008 -185371546 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 3908030 3908052 -185371502 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 3908175 3908231 -185371323 + AT_rich Low_complexity Low_complexity 1 56 0 1124 132 113 33 chr6 3910099 3910312 -185369242 + AluJo SINE Alu 1 230 -82 1570 74 0 11 chr6 3910312 3910501 -185369053 - AluSp SINE Alu -126 187 1 2178 114 3 3 chr6 3910501 3910800 -185368754 - AluSx SINE Alu -13 299 1 850 265 175 10 chr6 3910833 3911343 -185368211 - L2 LINE L2 -16 3297 2709 722 178 144 29 chr6 3911470 3911678 -185367876 - MIR SINE MIR -11 251 20 834 238 102 0 chr6 3911823 3912029 -185367525 - MIR SINE MIR -33 229 3 1612 179 9 57 chr6 3912385 3912703 -185366851 - AluJo SINE Alu -9 303 1 224 327 0 0 chr6 3912830 3912885 -185366669 + L2 LINE L2 353 407 -2907 1099 129 6 18 chr6 3913210 3913381 -185366173 - FRAM SINE Alu -8 168 1 1735 170 13 42 chr6 3913537 3913848 -185365706 - AluJb SINE Alu -8 304 3 2284 115 0 6 chr6 3914127 3914440 -185365114 - AluSx SINE Alu -1 311 1 286 211 53 0 chr6 3914944 3915020 -185364534 + MER116 DNA Mariner 1 80 0 204 40 0 0 chr6 3915187 3915212 -185364342 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 203 259 9 60 chr6 3915844 3915960 -185363594 + A-rich Low_complexity Low_complexity 5 114 0 483 276 115 36 chr6 3918438 3918742 -185360812 - L1MC4a LINE L1 -1971 5837 5510 2230 77 4 0 chr6 3918880 3919199 -185360355 - AluSg SINE Alu 0 329 10 180 111 0 0 chr6 3919269 3919296 -185360258 + (TA)n Simple_repeat Simple_repeat 2 28 0 2059 79 0 95 chr6 3919305 3919644 -185359910 - AluSx SINE Alu 0 309 1 1962 119 14 4 chr6 3919891 3920169 -185359385 + AluSp SINE Alu 9 289 -24 1774 184 0 0 chr6 3920437 3920719 -185358835 - AluJb SINE Alu -30 282 1 665 240 60 0 chr6 3920723 3920873 -185358681 - AluJb SINE Alu -17 295 137 1850 141 24 10 chr6 3920907 3921205 -185358349 + AluJb SINE Alu 3 304 -8 261 0 0 0 chr6 3922480 3922509 -185357045 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 125 35 39 chr6 3922514 3922746 -185356808 - AluSx SINE Alu -37 275 45 351 247 118 12 chr6 3922999 3923169 -185356385 - HAL1 LINE L1 -1088 1419 1232 513 289 179 37 chr6 3923183 3923859 -185355695 - HAL1 LINE L1 -1477 1030 259 228 86 0 0 chr6 3924020 3924055 -185355499 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1650 144 87 11 chr6 3924100 3924377 -185355177 - AluJb SINE Alu -14 298 1 358 224 187 0 chr6 3924456 3924590 -185354964 - L1ME2 LINE L1 -16 6148 5990 558 155 68 0 chr6 3924821 3924924 -185354630 - L1MC1 LINE L1 -5 6328 6219 1091 145 59 5 chr6 3925585 3925771 -185353783 + AluJb SINE Alu 108 303 -9 444 182 261 51 chr6 3925830 3926006 -185353548 + MER20 DNA MER1_type 7 219 0 344 234 26 0 chr6 3926346 3926423 -185353131 - MIR SINE MIR -61 147 69 1130 192 88 22 chr6 3927552 3927869 -185351685 - MER46C DNA MER2_type 0 338 1 850 174 0 153 chr6 3928574 3928907 -185350647 - L1MC5 LINE L1 -861 7100 6820 666 249 95 86 chr6 3928907 3929043 -185350511 - MER58B DNA MER1_type -2079 341 208 2369 58 10 7 chr6 3929043 3929356 -185350198 - AluY SINE Alu 0 314 1 666 249 95 86 chr6 3929356 3929556 -185349998 - MER58B DNA MER1_type -2212 208 1 850 174 0 153 chr6 3929556 3929849 -185349705 - L1MC5 LINE L1 -1141 6820 6476 1007 247 71 30 chr6 3930217 3930683 -185348871 - L1MC5 LINE L1 -2029 5779 5295 2162 114 3 0 chr6 3930858 3931155 -185348399 - AluSx SINE Alu -14 298 1 278 213 115 41 chr6 3931502 3931624 -185347930 + L1MC4 LINE L1 7906 8036 -6 405 0 0 0 chr6 3932099 3932144 -185347410 + (CA)n Simple_repeat Simple_repeat 2 46 0 2565 46 0 3 chr6 3932294 3932598 -185346956 + AluY SINE Alu 1 303 -8 1120 162 8 83 chr6 3932749 3932990 -185346564 - AluJo SINE Alu -5 307 85 2785 13 0 0 chr6 3934216 3934523 -185345031 - AluYa5 SINE Alu -4 307 1 2084 102 0 33 chr6 3935083 3935407 -185344147 - AluSx SINE Alu 0 312 1 2076 103 0 17 chr6 3935485 3935814 -185343740 - AluSq SINE Alu 0 313 1 454 174 22 22 chr6 3936450 3936569 -185342985 - AluSg/x SINE Alu 0 305 187 561 188 210 6 chr6 3937534 3937710 -185341844 - L1PA7 LINE L1 -1 6153 5942 1399 176 70 40 chr6 3938087 3938399 -185341155 - AluJo SINE Alu 0 320 1 2080 105 4 0 chr6 3938713 3938989 -185340565 - AluSc SINE Alu -20 289 13 23 33 0 0 chr6 3940448 3940478 -185339076 + AT_rich Low_complexity Low_complexity 1 30 0 1202 86 37 0 chr6 3941949 3942111 -185337443 - AluY SINE Alu -9 302 135 1134 165 36 45 chr6 3942208 3942432 -185337122 - AluJo SINE Alu -9 303 82 23 0 0 0 chr6 3943201 3943224 -185336330 + AT_rich Low_complexity Low_complexity 1 23 0 244 303 86 40 chr6 3943272 3943447 -185336107 + L2 LINE L2 2652 2834 -480 2075 122 3 23 chr6 3943838 3944142 -185335412 - AluSx SINE Alu -14 298 1 816 191 83 5 chr6 3944285 3944489 -185335065 - MER7A DNA MER2_type -117 229 12 21 0 0 0 chr6 3946706 3946727 -185332827 + AT_rich Low_complexity Low_complexity 1 21 0 852 168 48 12 chr6 3949811 3949978 -185329576 - AluSc SINE Alu -2 307 135 607 256 130 27 chr6 3950551 3950774 -185328780 - MIR SINE MIR -13 249 4 2217 96 31 0 chr6 3951419 3951710 -185327844 - AluSg1 SINE Alu -9 300 1 23 33 0 0 chr6 3951761 3951791 -185327763 + AT_rich Low_complexity Low_complexity 1 30 0 305 359 71 12 chr6 3951889 3952059 -185327495 + MER5A DNA MER1_type 8 187 -2 22 0 0 0 chr6 3954119 3954141 -185325413 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 3954300 3954332 -185325222 + AT_rich Low_complexity Low_complexity 1 32 0 1664 201 30 0 chr6 3954920 3955223 -185324331 + AluJb SINE Alu 1 312 0 415 297 133 0 chr6 3955620 3955785 -185323769 - MIR SINE MIR -74 188 2 303 261 0 15 chr6 3956169 3956234 -185323320 + MER5A DNA MER1_type 123 186 -3 2144 114 10 0 chr6 3956258 3956556 -185322998 + AluSq SINE Alu 1 301 -12 711 58 58 33 chr6 3956556 3956676 -185322878 + L1PA8 LINE L1 6050 6172 0 2279 98 3 0 chr6 3956678 3956973 -185322581 + AluSp SINE Alu 1 296 -17 714 235 27 27 chr6 3956999 3957182 -185322372 + MIR SINE MIR 53 235 -27 27 0 0 0 chr6 3957580 3957607 -185321947 + AT_rich Low_complexity Low_complexity 1 27 0 1964 133 3 20 chr6 3958049 3958349 -185321205 - AluSx SINE Alu -17 295 1 2140 108 0 40 chr6 3959247 3959570 -185319984 + AluSx SINE Alu 1 310 -2 441 292 81 49 chr6 3959953 3960138 -185319416 + L3b LINE CR1 1303 1493 -90 234 81 0 27 chr6 3960154 3960191 -185319363 + MER5B DNA MER1_type 20 55 -123 2262 109 0 6 chr6 3960242 3960553 -185319001 + AluSx SINE Alu 1 309 -3 181 194 0 0 chr6 3960553 3960584 -185318970 + MER5A DNA MER1_type 111 141 -48 329 222 25 0 chr6 3960586 3960667 -185318887 + U13 snRNA snRNA 1 83 -21 2045 108 37 17 chr6 3960794 3961090 -185318464 + AluSx SINE Alu 1 302 -10 2611 63 0 0 chr6 3962247 3962549 -185317005 - AluSg SINE Alu -8 302 1 27 100 0 0 chr6 3963411 3963501 -185316053 + GC_rich Low_complexity Low_complexity 1 90 0 21 36 0 0 chr6 3963534 3963562 -185315992 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 3964229 3964261 -185315293 + AT_rich Low_complexity Low_complexity 1 32 0 566 218 91 63 chr6 3964430 3964682 -185314872 + L2 LINE L2 3032 3290 -23 332 263 26 26 chr6 3965370 3965484 -185314070 - MIR SINE MIR -13 249 136 2154 104 3 35 chr6 3965491 3965809 -185313745 - AluSx SINE Alu -4 308 1 3730 103 68 6 chr6 3966504 3967050 -185312504 + MER39B LTR ERV1 1 580 -73 510 233 10 0 chr6 3967050 3967153 -185312401 - AluSc SINE Alu -93 216 113 2112 142 0 7 chr6 3967737 3968047 -185311507 - AluSx SINE Alu 0 312 5 207 108 27 0 chr6 3969509 3969546 -185310008 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 182 45 15 chr6 3970005 3970025 -185309529 + GA-rich Low_complexity Low_complexity 2 20 -49 1713 156 48 17 chr6 3970025 3970314 -185309240 + AluJo SINE Alu 1 298 -14 247 182 45 15 chr6 3970314 3970359 -185309195 + GA-rich Low_complexity Low_complexity 20 69 0 2382 98 3 0 chr6 3970362 3970669 -185308885 + AluSp SINE Alu 1 308 -5 1232 175 16 70 chr6 3972043 3972357 -185307197 - AluJo SINE Alu -15 297 1 2439 67 3 3 chr6 3972515 3972815 -185306739 - AluY SINE Alu -11 300 1 2105 112 34 3 chr6 3973272 3973566 -185305988 + AluSx SINE Alu 1 303 -9 1111 138 56 81 chr6 3973663 3973708 -185305846 - MLT1A1 LTR MaLR 0 365 320 2338 97 10 0 chr6 3973708 3974008 -185305546 + AluSq SINE Alu 1 303 -10 1111 138 56 81 chr6 3974008 3974205 -185305349 - MLT1A1 LTR MaLR -45 320 173 6129 117 208 86 chr6 3974206 3975675 -185303879 + pTR5 LTR ERV1 791 2438 0 593 183 32 40 chr6 3975714 3975840 -185303714 - MLT1A1 LTR MaLR -240 125 1 279 85 85 43 chr6 3975957 3976004 -185303550 - MER8 DNA MER2_type 0 239 191 254 250 24 97 chr6 3976009 3976133 -185303421 + LTR4 LTR ERV1 5 119 -477 767 232 28 46 chr6 3976370 3976654 -185302900 + LTR4 LTR ERV1 318 596 0 4077 131 29 50 chr6 3976654 3976775 -185302779 + Tigger2 DNA MER2_type 47 169 -2549 1949 126 7 0 chr6 3976775 3977045 -185302509 + AluSx SINE Alu 5 276 -36 4077 131 29 50 chr6 3977045 3977248 -185302306 + Tigger2 DNA MER2_type 169 375 -2343 2141 124 3 0 chr6 3977248 3977546 -185302008 + AluSq SINE Alu 1 299 -14 4077 131 29 50 chr6 3977546 3977943 -185301611 + Tigger2 DNA MER2_type 375 754 -1964 919 142 77 27 chr6 3977995 3978020 -185301534 + Tigger2 DNA MER2_type 2461 2483 -235 2082 131 7 0 chr6 3978020 3978318 -185301236 - AluSx SINE Alu -12 300 1 919 142 77 27 chr6 3978318 3978475 -185301079 + Tigger2 DNA MER2_type 2483 2652 -66 601 119 30 50 chr6 3978523 3978602 -185300952 + FLAM_A SINE Alu 29 107 -204 2172 106 13 7 chr6 3978602 3978903 -185300651 - AluSc SINE Alu -6 303 1 601 119 30 50 chr6 3978903 3978924 -185300630 + FLAM_A SINE Alu 107 127 -184 361 221 15 0 chr6 3978925 3978993 -185300561 + Tigger2 DNA MER2_type 2640 2708 -10 2200 99 3 0 chr6 3979006 3979329 -185300225 - AluSx SINE Alu 0 324 1 1670 193 74 37 chr6 3979541 3979971 -185299583 + MLT1C LTR MaLR 18 463 -4 480 281 72 27 chr6 3980255 3980615 -185298939 + L1ME4a LINE L1 5600 5984 -137 26 0 0 0 chr6 3981501 3981527 -185298027 + AT_rich Low_complexity Low_complexity 1 26 0 1458 138 9 9 chr6 3981531 3981755 -185297799 + AluJo SINE Alu 36 259 -53 2402 51 27 0 chr6 3982375 3982667 -185296887 - AluY SINE Alu -11 300 1 2335 84 0 0 chr6 3982798 3983083 -185296471 - AluY SINE Alu -26 285 1 315 272 234 0 chr6 3983819 3984003 -185295551 - L2 LINE L2 -549 2765 2539 2255 112 3 13 chr6 3984107 3984421 -185295133 - AluSx SINE Alu -1 311 1 1866 151 130 16 chr6 3984881 3985265 -185294289 + MSTA LTR MaLR 1 428 0 185 302 0 38 chr6 3985457 3985510 -185294044 + L2 LINE L2 3163 3213 -59 477 252 25 0 chr6 3985614 3985733 -185293821 - MLT1H LTR MaLR -425 124 3 2494 143 16 9 chr6 3985982 3986407 -185293147 + L1MA3 LINE L1 5600 6027 -278 2503 127 8 3 chr6 3986409 3986795 -185292759 + L1MA5 LINE L1 5903 6290 -10 2413 97 0 0 chr6 3987768 3988079 -185291475 - AluSq SINE Alu -2 311 1 345 127 0 0 chr6 3988086 3988141 -185291413 - Alu SINE Alu -1 300 246 3641 211 98 54 chr6 3988537 3988849 -185290705 - L1M4 LINE L1 -806 5340 5043 2446 78 0 0 chr6 3988849 3989144 -185290410 + AluY SINE Alu 1 295 -16 3641 211 98 54 chr6 3989144 3989295 -185290259 - L1M4 LINE L1 -1103 5043 4900 2281 115 7 0 chr6 3989295 3989590 -185289964 - AluSx SINE Alu -15 297 1 3641 211 98 54 chr6 3989590 3990030 -185289524 - L1M4 LINE L1 -1246 4900 4481 2958 170 129 21 chr6 3990030 3990736 -185288818 - LTR48 LTR ERV1 -3 784 3 3641 211 98 54 chr6 3990736 3990890 -185288664 - L1M4 LINE L1 -1665 4481 4335 2838 161 39 17 chr6 3990890 3991430 -185288124 - L1MB1 LINE L1 -1 6167 5616 3641 211 98 54 chr6 3991430 3991802 -185287752 - L1M4 LINE L1 -1811 4335 3846 2630 127 83 22 chr6 3991812 3992317 -185287237 - L1MB4 LINE L1 -3 6177 5642 306 137 78 0 chr6 3992319 3992370 -185287184 + MSTD LTR MaLR 1 55 -373 1497 184 92 30 chr6 3994216 3994552 -185285002 + MSTD LTR MaLR 40 396 0 255 87 0 87 chr6 3994552 3994598 -185284956 - L1MB4 LINE L1 -539 5644 5603 * 5453 219 97 19 chr6 3994586 3997176 -185282378 - L1M4 LINE L1 -1462 4920 924 2013 142 3 7 chr6 3997176 3997479 -185282075 - AluSx SINE Alu -10 302 1 5453 219 97 19 chr6 3997479 3997662 -185281892 - L1M4 LINE L1 -5458 924 757 347 303 67 26 chr6 3998293 3998533 -185281021 - L1MDb LINE L1 -5484 586 323 287 68 45 0 chr6 3998664 3998708 -185280846 + MADE1 DNA Mariner 1 46 -34 337 331 33 11 chr6 3998759 3998943 -185280611 - L1MDb LINE L1 -5882 188 1 273 311 34 17 chr6 3998943 3999062 -185280492 + MIR SINE MIR 47 167 -95 2253 103 10 0 chr6 4000268 4000560 -185278994 + AluSx SINE Alu 1 295 -17 2162 114 0 10 chr6 4000642 4000941 -185278613 - AluSx SINE Alu -16 296 1 286 256 22 11 chr6 4001017 4001107 -185278447 - MER5A DNA MER1_type -89 100 10 2208 116 0 3 chr6 4002235 4002529 -185277025 - AluSx SINE Alu -19 293 1 2133 123 0 7 chr6 4003517 4003818 -185275736 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 4003866 4003891 -185275663 + AT_rich Low_complexity Low_complexity 1 25 0 2380 210 50 114 chr6 4003930 4004367 -185275187 - L1ME2 LINE L1 -49 6115 5651 376 100 0 57 chr6 4004367 4004392 -185275162 + L1MA9 LINE L1 6247 6272 -40 1829 186 20 12 chr6 4004392 4004642 -185274912 - MER7A DNA MER2_type -2693 345 92 2127 108 38 0 chr6 4004642 4004929 -185274625 + AluSx SINE Alu 1 298 -14 1829 186 20 12 chr6 4004929 4005022 -185274532 - MER7A DNA MER2_type -2946 92 1 376 100 0 57 chr6 4005022 4005066 -185274488 + L1MA9 LINE L1 6272 6312 0 2380 210 50 114 chr6 4005066 4005625 -185273929 - L1ME2 LINE L1 -513 5651 5176 349 209 63 4 chr6 4006292 4006407 -185273147 + MIR SINE MIR 19 146 -63 2363 105 0 0 chr6 4006414 4006718 -185272836 - AluSx SINE Alu -8 304 1 233 150 0 0 chr6 4006758 4006798 -185272756 - Alu SINE Alu -7 126 87 1461 119 0 0 chr6 4006800 4006993 -185272561 - AluSq SINE Alu -120 193 1 1958 112 0 18 chr6 4007357 4007633 -185271921 - AluSx SINE Alu 0 312 42 183 125 83 0 chr6 4007735 4007807 -185271747 + (TA)n Simple_repeat Simple_repeat 2 79 0 1952 123 27 17 chr6 4007882 4008174 -185271380 + AluSx SINE Alu 1 295 -17 416 239 22 46 chr6 4008708 4008927 -185270627 + L1ME4a LINE L1 5709 6121 0 302 222 86 20 chr6 4008964 4009070 -185270484 + MIR3 SINE MIR 79 194 -14 528 310 64 74 chr6 4010462 4011000 -185268554 - L2 LINE L2 -2 3270 2733 1706 249 41 21 chr6 4011011 4011526 -185268028 - L1ME2 LINE L1 -8 6156 5632 2014 116 0 0 chr6 4011602 4011869 -185267685 - AluSg SINE Alu -2 308 42 1876 164 33 9 chr6 4012766 4013102 -185266452 - MER2 DNA MER2_type 0 344 1 249 108 0 0 chr6 4013287 4013324 -185266230 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1999 132 17 3 chr6 4013324 4013611 -185265943 - AluSx SINE Alu -21 291 1 266 322 203 0 chr6 4013615 4013792 -185265762 + MIR SINE MIR 50 262 0 25 0 0 0 chr6 4015709 4015734 -185263820 + AT_rich Low_complexity Low_complexity 1 25 0 2236 135 0 0 chr6 4015772 4016084 -185263470 + AluSx SINE Alu 1 312 0 1039 258 31 28 chr6 4016250 4016572 -185262982 - MER77 LTR ERV1 -6 599 277 528 248 106 47 chr6 4016832 4016962 -185262592 - L1MC5 LINE L1 -31 7930 7809 2178 117 7 0 chr6 4016962 4017261 -185262293 - AluSx SINE Alu -11 301 1 528 248 106 47 chr6 4017261 4017534 -185262020 - L1MC5 LINE L1 -152 7809 7503 441 263 80 144 chr6 4019670 4020419 -185259135 - L1M2 LINE L1 -5489 1360 660 228 67 0 0 chr6 4020701 4020731 -185258823 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 222 237 0 66 chr6 4020929 4021005 -185258549 - MIR SINE MIR -129 133 63 2082 113 14 3 chr6 4021115 4021408 -185258146 - AluSq SINE Alu -17 296 1 857 174 73 18 chr6 4021719 4021937 -185257617 - LTR37B LTR ERV1 -42 426 197 2558 251 103 39 chr6 4022636 4023488 -185256066 - ERVL LTR ERVL -692 5072 4166 700 227 122 46 chr6 4023568 4023872 -185255682 - HAL1 LINE L1 -1069 1438 1112 441 258 24 72 chr6 4023896 4024063 -185255491 - L1MD2 LINE L1 -2 6357 6199 1950 234 86 4 chr6 4025390 4025878 -185253676 - L1MD2 LINE L1 -144 6215 5688 642 248 41 60 chr6 4025878 4026028 -185253526 - HAL1 LINE L1 -1400 1107 956 2166 115 7 3 chr6 4026028 4026333 -185253221 - AluSx SINE Alu -6 306 1 642 248 41 60 chr6 4026333 4026496 -185253058 - HAL1 LINE L1 -1551 956 800 622 130 0 46 chr6 4026541 4026649 -185252905 - MLT1J2 LTR MaLR -2 448 346 270 299 28 40 chr6 4026720 4026897 -185252657 + HAL1 LINE L1 2258 2432 -75 2036 149 41 24 chr6 4027110 4027479 -185252075 - THE1C LTR MaLR 0 375 1 262 236 67 22 chr6 4027738 4027827 -185251727 - L1MD2 LINE L1 -863 5283 5191 271 252 0 54 chr6 4027828 4027942 -185251612 - MIR SINE MIR -97 111 17 3280 126 6 12 chr6 4027989 4028483 -185251071 + L1PA13 LINE L1 5666 6156 -7 469 269 58 32 chr6 4028497 4028653 -185250901 + MIR SINE MIR 24 183 -79 23 33 0 0 chr6 4028706 4028736 -185250818 + AT_rich Low_complexity Low_complexity 1 30 0 677 274 18 39 chr6 4029120 4029401 -185250153 + MARNA DNA Mariner 191 465 -121 249 211 92 13 chr6 4029333 4029409 -185250145 - MARNA DNA Mariner -395 191 110 * 2551 124 5 22 chr6 4029700 4030070 -185249484 + THE1B LTR MaLR 1 364 0 750 181 9 0 chr6 4031332 4031448 -185248106 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr6 4031454 4031478 -185248076 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2428 84 0 0 chr6 4032060 4032387 -185247167 + AluSc SINE Alu 1 309 0 955 174 0 0 chr6 4032466 4032627 -185246927 - FRAM SINE Alu -4 172 12 292 281 0 0 chr6 4035414 4035478 -185244076 - L2 LINE L2 -5 3267 3204 2284 92 0 10 chr6 4035941 4036247 -185243307 + AluSg SINE Alu 1 303 -7 869 176 84 130 chr6 4036248 4036471 -185243083 - MLT1B LTR MaLR 0 390 181 2341 83 3 0 chr6 4036471 4036771 -185242783 - AluSc SINE Alu -6 303 3 869 176 84 130 chr6 4036771 4036831 -185242723 - MLT1B LTR MaLR -209 181 120 916 214 144 28 chr6 4036831 4037116 -185242438 - LTR36 LTR ERV1 -1 610 293 356 185 0 0 chr6 4037283 4037346 -185242208 - MLT1C LTR MaLR -263 127 65 3373 116 22 41 chr6 4037346 4037931 -185241623 + MER4B LTR ERV1 1 574 -36 448 95 0 81 chr6 4037962 4038036 -185241518 - MLT1C LTR MaLR -399 68 1 1794 241 47 9 chr6 4038073 4038497 -185241057 + MER21B LTR ERV1 12 451 -412 873 121 0 0 chr6 4038506 4038630 -185240924 - FRAM SINE Alu -1 175 52 3897 138 98 8 chr6 4038630 4039281 -185240273 - MER50 LTR ERV1 -24 710 1 346 210 0 0 chr6 4039281 4039339 -185240215 - AluJ/FLAM SINE Alu -244 58 1 971 254 50 53 chr6 4039347 4039685 -185239869 + MER21B LTR ERV1 466 802 -61 2334 104 0 0 chr6 4040102 4040400 -185239154 + AluSq SINE Alu 1 298 -15 278 309 0 0 chr6 4040458 4040539 -185239015 + L1ME LINE L1 4263 4343 -1803 633 260 61 25 chr6 4040952 4040981 -185238573 + MIR SINE MIR 52 79 -183 1764 161 27 3 chr6 4040981 4041273 -185238281 + AluJb SINE Alu 4 302 -10 633 260 61 25 chr6 4041273 4041439 -185238115 + MIR SINE MIR 79 254 -8 284 345 44 32 chr6 4041501 4041583 -185237971 + L1ME LINE L1 5319 5399 -722 2083 133 3 0 chr6 4041583 4041883 -185237671 + AluSx SINE Alu 1 301 -11 284 345 44 32 chr6 4041883 4042139 -185237415 + L1ME LINE L1 5399 5661 -460 234 333 29 29 chr6 4043862 4043967 -185235587 - L2 LINE L2 -8 3305 3201 789 85 171 0 chr6 4043967 4044096 -185235458 + LTR24C LTR ERV1 1 151 -484 252 277 30 50 chr6 4044178 4044279 -185235275 - L2 LINE L2 -480 2834 2736 335 67 0 50 chr6 4044726 4044786 -185234768 + (A)n Simple_repeat Simple_repeat 1 57 0 1013 119 0 0 chr6 4044837 4044971 -185234583 + AluSq/x SINE Alu 2 135 -178 1831 162 3 7 chr6 4044971 4045267 -185234287 + AluSx SINE Alu 1 295 -17 1676 144 39 35 chr6 4047015 4047300 -185232254 + AluJo SINE Alu 1 286 -26 553 221 123 7 chr6 4047652 4047806 -185231748 + MIR SINE MIR 57 228 -34 1887 59 0 0 chr6 4047896 4048117 -185231437 - AluY SINE Alu -17 294 74 1861 153 3 10 chr6 4049008 4049308 -185230246 + AluJb SINE Alu 1 298 -14 392 313 108 5 chr6 4049667 4049862 -185229692 + LTR16A LTR ERVL 158 372 -78 636 307 180 13 chr6 4050194 4050510 -185229044 - MLT1I LTR MaLR 0 409 41 2087 139 38 46 chr6 4050639 4050985 -185228569 + MER2 DNA MER2_type 1 343 -1 229 267 174 0 chr6 4051092 4051178 -185228376 - L2 LINE L2 -4 3309 3209 1145 115 4 106 chr6 4051297 4051532 -185228022 + L1MB7 LINE L1 5907 6117 -67 2418 66 0 7 chr6 4051564 4051867 -185227687 - AluY SINE Alu -10 301 1 351 44 0 0 chr6 4051870 4051915 -185227639 + (T)n Simple_repeat Simple_repeat 1 45 0 878 263 110 53 chr6 4052087 4053344 -185226210 + L1M4 LINE L1 3790 5163 -983 2235 104 3 10 chr6 4053344 4053653 -185225901 + AluSg SINE Alu 1 307 -3 878 263 110 53 chr6 4053653 4053670 -185225884 + L1M4 LINE L1 5163 5178 -968 2100 95 0 0 chr6 4053680 4053944 -185225610 + AluSq SINE Alu 1 264 -49 455 273 43 91 chr6 4054196 4054427 -185225127 - MIR SINE MIR -42 220 1 199 209 0 47 chr6 4054735 4054778 -185224776 + L2 LINE L2 3215 3255 -17 22 56 0 0 chr6 4054901 4054937 -185224617 + AT_rich Low_complexity Low_complexity 1 36 0 441 295 61 120 chr6 4055683 4055823 -185223731 - L2 LINE L2 -1 3312 3165 2214 100 13 0 chr6 4055823 4056122 -185223432 + AluSp SINE Alu 1 303 -10 441 295 61 120 chr6 4056122 4056541 -185223013 - L2 LINE L2 -148 3165 2768 1034 134 6 39 chr6 4056687 4056866 -185222688 - FRAM SINE Alu -1 175 3 846 209 60 0 chr6 4057388 4057603 -185221951 + Charlie1 DNA MER1_type 2534 2761 0 406 289 170 7 chr6 4058006 4058141 -185221413 + MER5A DNA MER1_type 33 189 0 501 302 67 41 chr6 4058439 4058783 -185220771 + L1MEc LINE L1 32 384 -6012 6099 174 22 18 chr6 4058888 4059798 -185219756 + L1 LINE L1 4081 4997 -1149 2025 125 31 7 chr6 4059798 4060087 -185219467 + AluSx SINE Alu 1 296 -16 6099 174 22 18 chr6 4060087 4060378 -185219176 + L1 LINE L1 4997 5286 -860 1015 175 0 28 chr6 4060382 4060559 -185218995 + AluJo SINE Alu 16 187 -125 1121 148 0 44 chr6 4060561 4060764 -185218790 + AluJo SINE Alu 119 312 0 1222 245 119 42 chr6 4060765 4061344 -185218210 + L1MEc LINE L1 1737 2347 -3868 2126 107 0 0 chr6 4061344 4061659 -185217895 + AluSg SINE Alu 1 315 0 1222 245 119 42 chr6 4061659 4061924 -185217630 + L1MEc LINE L1 2347 2590 -3625 977 291 150 28 chr6 4061987 4062382 -185217172 + L2 LINE L2 2339 2809 -505 809 189 8 0 chr6 4062382 4062514 -185217040 - FLAM_C SINE Alu 0 133 1 977 291 150 28 chr6 4062514 4062619 -185216935 + L2 LINE L2 2809 2900 -414 2260 85 0 0 chr6 4062676 4062988 -185216566 + AluSg SINE Alu 1 312 0 24 0 0 0 chr6 4063053 4063077 -185216477 + AT_rich Low_complexity Low_complexity 1 24 0 311 327 152 14 chr6 4063308 4063519 -185216035 - MIR SINE MIR -21 241 2 255 257 88 22 chr6 4063698 4063834 -185215720 + L1ME4a LINE L1 5944 6088 -33 300 296 114 0 chr6 4065606 4065738 -185213816 + MIR SINE MIR 20 166 -96 1932 84 73 14 chr6 4065842 4066128 -185213426 - AluSq SINE Alu -10 303 1 2354 65 17 3 chr6 4066328 4066621 -185212933 - AluSx SINE Alu -14 298 2 198 0 0 0 chr6 4068176 4068198 -185211356 + (T)n Simple_repeat Simple_repeat 1 22 0 207 88 0 0 chr6 4068475 4068509 -185211045 + (T)n Simple_repeat Simple_repeat 1 34 0 811 195 58 6 chr6 4069331 4069505 -185210049 - MIR SINE MIR -74 188 6 1087 183 48 60 chr6 4069729 4069894 -185209660 - AluJb SINE Alu -3 309 147 2182 113 0 0 chr6 4069894 4070186 -185209368 - AluSc SINE Alu -17 292 1 1087 183 48 60 chr6 4070186 4070271 -185209283 - AluJb SINE Alu -165 147 62 535 194 0 0 chr6 4070274 4070367 -185209187 + FLAM_A SINE Alu 31 123 -19 2155 110 14 3 chr6 4070634 4070925 -185208629 - AluSx SINE Alu -18 294 1 245 295 95 0 chr6 4071874 4071969 -185207585 - L2 LINE L2 -2 3311 3208 1259 99 0 0 chr6 4072025 4072186 -185207368 - AluSp SINE Alu -15 298 138 300 53 0 0 chr6 4072286 4072324 -185207230 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1593 166 55 35 chr6 4072409 4072699 -185206855 - AluJo SINE Alu -16 296 1 198 265 20 0 chr6 4073689 4073738 -185205816 + L2 LINE L2 3247 3296 -17 1848 175 153 0 chr6 4074354 4074754 -185204800 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 4074776 4074798 -185204756 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 4074921 4074977 -185204577 + AT_rich Low_complexity Low_complexity 1 56 0 1505 147 88 26 chr6 4076845 4077118 -185202436 + AluJo SINE Alu 1 290 -22 685 249 23 17 chr6 4077308 4077485 -185202069 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr6 4077533 4077583 -185201971 + (CA)n Simple_repeat Simple_repeat 1 50 0 2318 137 16 29 chr6 4078210 4078590 -185200964 - THE1C LTR MaLR 0 375 1 10268 107 31 45 chr6 4078592 4080193 -185199361 - THE1C-int LTR MaLR -2 1578 1 2312 120 29 27 chr6 4080193 4080567 -185198987 - THE1C LTR MaLR 0 375 1 1260 186 93 47 chr6 4080657 4080958 -185198596 + MSTB1 LTR MaLR 1 315 -117 25 0 0 0 chr6 4081450 4081475 -185198079 + AT_rich Low_complexity Low_complexity 1 25 0 3321 159 3 52 chr6 4082224 4082670 -185196884 + MER73 LTR ERVL 15 422 -222 2329 89 3 29 chr6 4082670 4082984 -185196570 - AluY SINE Alu -5 306 1 3321 159 3 52 chr6 4082984 4083171 -185196383 + MER73 LTR ERVL 422 617 -27 1318 149 14 0 chr6 4083172 4083380 -185196174 - THE1C LTR MaLR 0 375 165 334 252 43 0 chr6 4083559 4083674 -185195880 - THE1C LTR MaLR -246 129 10 537 216 7 14 chr6 4083688 4083827 -185195727 - THE1C-int LTR MaLR -4 1576 1439 * 7275 119 34 41 chr6 4083822 4085097 -185194457 - THE1C-int LTR MaLR -367 1213 3 2659 102 11 3 chr6 4085099 4085471 -185194083 - THE1C LTR MaLR 0 375 1 299 301 199 15 chr6 4085777 4085973 -185193581 - MIR SINE MIR 0 262 31 623 235 22 34 chr6 4086015 4086194 -185193360 + MER5B DNA MER1_type 1 177 -1 282 164 0 0 chr6 4086230 4086285 -185193269 + (CA)n Simple_repeat Simple_repeat 2 56 0 516 321 75 11 chr6 4086615 4086895 -185192659 + MER102a DNA MER1_type 1 298 -32 2259 138 30 25 chr6 4087487 4087849 -185191705 + THE1B LTR MaLR 1 364 0 11686 90 13 10 chr6 4087849 4089425 -185190129 + THE1B-int LTR MaLR 1 1580 0 1069 164 55 32 chr6 4089427 4089646 -185189908 + THE1B LTR MaLR 3 226 -149 492 249 15 88 chr6 4089657 4089862 -185189692 + LTR4 LTR ERV1 10 199 -397 390 261 50 31 chr6 4090055 4090216 -185189338 + LTR4 LTR ERV1 318 481 -115 8728 162 27 27 chr6 4090231 4091841 -185187713 + L1P LINE L1 11 1620 -4526 1636 155 79 65 chr6 4091856 4092129 -185187425 + HERVL74 LTR ERVL 1243 1525 -4160 1928 128 0 21 chr6 4092129 4092439 -185187115 + AluSx SINE Alu 1 304 0 1636 155 79 65 chr6 4092439 4092531 -185187023 + HERVL74 LTR ERVL 1525 1614 -4071 1729 159 101 29 chr6 4092534 4092622 -185186932 + L1MA4 LINE L1 5642 5722 -578 1544 182 0 0 chr6 4092622 4092864 -185186690 + AluSx SINE Alu 1 242 -70 1729 159 101 29 chr6 4092864 4092895 -185186659 + L1MA4 LINE L1 5722 5749 -551 432 0 0 0 chr6 4092895 4092943 -185186611 + (CA)n Simple_repeat Simple_repeat 2 49 0 1729 159 101 29 chr6 4092943 4093200 -185186354 + L1MA4 LINE L1 5749 6046 -254 957 143 0 0 chr6 4093203 4093336 -185186218 + FLAM_C SINE Alu 1 133 -10 751 309 77 3 chr6 4093360 4093726 -185185828 + L1ME LINE L1 4910 5302 -844 450 53 0 0 chr6 4093726 4093783 -185185771 - U2 snRNA snRNA -125 63 7 1656 41 0 0 chr6 4093783 4093979 -185185575 + L1PA5 LINE L1 5959 6154 0 401 230 29 7 chr6 4093981 4094139 -185185415 + L1ME LINE L1 5328 5486 -676 18806 127 20 56 chr6 4094152 4097522 -185182032 + L1P LINE L1 12 3260 -2886 18359 78 18 5 chr6 4097701 4100938 -185178616 + L1PA6 LINE L1 2882 6153 -1 352 165 87 58 chr6 4100938 4101041 -185178513 + LTR4 LTR ERV1 477 582 -14 * 829 175 75 12 chr6 4101036 4101196 -185178358 + THE1B LTR MaLR 193 362 -2 225 204 0 0 chr6 4101433 4101477 -185178077 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 818 217 44 113 chr6 4101574 4102077 -185177477 + LTR37B LTR ERV1 1 468 0 1541 231 50 29 chr6 4102085 4102540 -185177014 - L1MC4 LINE L1 -96 7946 7482 664 240 0 0 chr6 4103027 4103156 -185176398 + FLAM_A SINE Alu 1 129 -4 2775 258 97 16 chr6 4104185 4105277 -185174277 - L1M4 LINE L1 -1824 4322 3143 1316 190 62 0 chr6 4105315 4105573 -185173981 - AluJo SINE Alu -38 274 1 444 237 0 0 chr6 4105642 4105781 -185173773 + L1M4 LINE L1 3047 3185 -2961 1111 269 111 24 chr6 4106260 4106368 -185173186 + HERV16 LTR ERVL 871 968 -4028 1935 60 0 9 chr6 4106368 4106600 -185172954 - AluY SINE Alu -14 297 68 1111 269 111 24 chr6 4106600 4106915 -185172639 + HERV16 LTR ERVL 968 1331 -3665 285 29 0 0 chr6 4107191 4107225 -185172329 + (TG)n Simple_repeat Simple_repeat 2 35 0 2404 108 57 5 chr6 4107328 4107698 -185171856 - L1PA11 LINE L1 -1 6173 5785 2267 125 3 0 chr6 4107704 4108015 -185171539 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 4109000 4109025 -185170529 + AT_rich Low_complexity Low_complexity 1 25 0 2842 109 144 2 chr6 4109183 4109649 -185169905 - THE1C-int LTR MaLR -1045 535 4 1839 155 61 22 chr6 4109652 4110013 -185169541 - THE1C LTR MaLR 0 375 1 4395 195 19 20 chr6 4110043 4110368 -185169186 - L1MA9 LINE L1 -161 6151 5827 2256 103 0 16 chr6 4110368 4110678 -185168876 - AluY SINE Alu -6 305 1 4395 195 19 20 chr6 4110678 4110711 -185168843 - L1MA9 LINE L1 -485 5827 5795 348 24 0 0 chr6 4110711 4110752 -185168802 + (CA)n Simple_repeat Simple_repeat 2 42 0 4395 195 19 20 chr6 4110752 4111197 -185168357 - L1MA9 LINE L1 -517 5795 5351 2361 101 0 0 chr6 4111197 4111494 -185168060 - AluSx SINE Alu -15 297 1 2442 74 0 3 chr6 4111499 4111798 -185167756 - AluY SINE Alu -13 298 1 4395 195 19 20 chr6 4111798 4112381 -185167173 - L1MA9 LINE L1 -965 5347 4765 934 221 67 0 chr6 4112383 4112578 -185166976 - AluJb SINE Alu -23 289 82 184 317 0 0 chr6 4162878 4162938 -185116616 + MIR SINE MIR 47 106 -156 531 274 177 23 chr6 4162949 4163339 -185116215 + MLT1J2 LTR MaLR 1 450 0 2608 57 0 0 chr6 4163453 4163751 -185115803 + AluY SINE Alu 2 299 -12 185 108 27 0 chr6 4164198 4164235 -185115319 + CT-rich Low_complexity Low_complexity 3 40 0 615 235 86 29 chr6 4164324 4164567 -185114987 - L1ME4a LINE L1 -177 5944 5688 2569 186 24 24 chr6 4164815 4165321 -185114233 + MLT2B2 LTR ERVL 2 507 -8 694 194 19 0 chr6 4165460 4165620 -185113934 + CT-rich Low_complexity Low_complexity 4 166 0 4566 184 40 25 chr6 4165638 4167253 -185112301 - L1MB7 LINE L1 -16 6168 4530 2291 118 0 0 chr6 4167520 4167825 -185111729 + AluSq SINE Alu 1 305 -8 193 284 28 110 chr6 4167946 4168055 -185111499 + MIR SINE MIR 36 135 -73 182 282 64 0 chr6 4169815 4169893 -185109661 - L2 LINE L2 -57 3215 3133 194 366 113 7 chr6 4169985 4170127 -185109427 - L2 LINE L2 -169 3103 2947 202 186 17 85 chr6 4170356 4170415 -185109139 - L2 LINE L2 -488 2826 2772 281 297 82 36 chr6 4170516 4170711 -185108843 + Charlie8 DNA MER1_type 115 1416 -1001 551 307 199 28 chr6 4171867 4171890 -185107664 - L2 LINE L2 0 3272 3254 1643 253 103 2 chr6 4171890 4172336 -185107218 - LTR16C LTR ERVL 0 491 1 551 307 199 28 chr6 4172336 4172638 -185106916 - L2 LINE L2 -18 3254 2891 2441 68 0 0 chr6 4172639 4172933 -185106621 + AluY SINE Alu 1 294 -17 1830 167 7 0 chr6 4173326 4173632 -185105922 - Tigger3(Golem) DNA MER2_type -1 3028 2721 389 231 77 0 chr6 4173624 4173702 -185105852 - Tigger3(Golem) DNA MER2_type -2935 94 11 * 775 220 146 14 chr6 4173730 4174000 -185105554 + MLT1G1 LTR MaLR 1 260 -330 437 171 40 51 chr6 4174060 4174236 -185105318 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 200 316 144 7 chr6 4175618 4175757 -185103797 - L2 LINE L2 -174 3098 2941 600 269 83 25 chr6 4175880 4176117 -185103437 - MIR SINE MIR 0 262 14 327 297 51 8 chr6 4176157 4176275 -185103279 + MER5A DNA MER1_type 43 165 -24 481 353 22 11 chr6 4176366 4176550 -185103004 + MIR3 SINE MIR 16 201 -7 2586 163 39 34 chr6 4176615 4176653 -185102901 - MLT1C LTR MaLR 0 467 431 2045 95 0 79 chr6 4176653 4176970 -185102584 + AluSq SINE Alu 1 292 -21 2586 163 39 34 chr6 4176970 4177396 -185102158 - MLT1C LTR MaLR -36 431 1 7109 141 47 23 chr6 4177474 4178124 -185101430 + Tigger3b DNA MER2_type 1 695 -2333 1778 164 6 41 chr6 4178124 4178302 -185101252 - AluJo SINE Alu -6 306 142 2022 145 0 7 chr6 4178302 4178598 -185100956 - AluSx SINE Alu -18 294 1 1778 164 6 41 chr6 4178598 4178736 -185100818 - AluJo SINE Alu -170 142 1 7109 141 47 23 chr6 4178736 4179287 -185100267 + Tigger3b DNA MER2_type 695 1231 0 469 247 33 54 chr6 4179565 4179788 -185099766 + L1ME4a LINE L1 5559 5718 -403 996 227 145 93 chr6 4179833 4180578 -185098976 - MER20B DNA MER1_type 0 784 1 253 258 81 32 chr6 4180784 4180908 -185098646 + L1ME4a LINE L1 5992 6121 0 1658 160 7 21 chr6 4180930 4181251 -185098303 + AluSx SINE Alu 1 317 0 1160 193 33 0 chr6 4181266 4181478 -185098076 - MER20 DNA MER1_type 0 219 1 467 279 123 18 chr6 4181480 4181699 -185097855 + MIR SINE MIR 9 250 -12 827 217 16 27 chr6 4183411 4183595 -185095959 + MER5A DNA MER1_type 1 182 -7 1365 195 92 23 chr6 4183612 4183915 -185095639 - MER2 DNA MER2_type 0 345 22 313 370 92 40 chr6 4184494 4184721 -185094833 - L2 LINE L2 -4 3268 3030 4342 133 8 39 chr6 4185114 4185837 -185093717 + MER50 LTR ERV1 34 734 0 206 333 63 0 chr6 4186904 4186967 -185092587 + MIR SINE MIR 23 89 -173 2319 184 29 86 chr6 4187171 4187753 -185091801 + MLT2B3 LTR ERVL 6 554 0 189 291 214 0 chr6 4188068 4188171 -185091383 + L3 LINE CR1 1105 1229 -348 21 0 0 0 chr6 4189114 4189135 -185090419 + AT_rich Low_complexity Low_complexity 1 21 0 2132 122 0 0 chr6 4190549 4190837 -185088717 - AluSg1 SINE Alu -21 288 1 215 303 40 0 chr6 4190890 4190966 -185088588 - MER5A DNA MER1_type -110 79 1 290 297 318 8 chr6 4191767 4192006 -185087548 - L2 LINE L2 -1 3271 2959 27 0 0 0 chr6 4192477 4192504 -185087050 + AT_rich Low_complexity Low_complexity 1 27 0 1751 91 0 28 chr6 4192851 4193104 -185086450 - L1PA14 LINE L1 -530 5631 5386 3431 104 34 8 chr6 4193105 4193604 -185085950 + L1PA14 LINE L1 5650 6161 0 1015 253 48 83 chr6 4193662 4194076 -185085478 + L2 LINE L2 2766 3152 -161 3984 114 22 5 chr6 4194076 4194666 -185084888 - L1MC1 LINE L1 -11 6322 5723 1015 253 48 83 chr6 4194666 4194823 -185084731 + L2 LINE L2 3152 3313 0 414 322 72 11 chr6 4195108 4195373 -185084181 + L1M2 LINE L1 5286 5566 -601 395 298 113 31 chr6 4195615 4195907 -185083647 - MER97c DNA MER1_type? -1 1089 774 738 176 0 40 chr6 4196124 4196272 -185083282 - MER97c DNA MER1_type? -466 624 483 2381 94 7 0 chr6 4196296 4196604 -185082950 - AluSg SINE Alu 0 310 1 1606 208 61 21 chr6 4196604 4196983 -185082571 - MER97b DNA MER1_type? -652 401 8 387 202 34 0 chr6 4197076 4197165 -185082389 - L1M4 LINE L1 -1210 5118 5027 5814 213 37 49 chr6 4197165 4198900 -185080654 + L1 LINE L1 1160 2871 -3917 2709 168 14 0 chr6 4198900 4199412 -185080142 + L1 LINE L1 4960 5478 -1310 7461 182 33 15 chr6 4199428 4201368 -185078186 - L1M4 LINE L1 -4065 1263 3 892 219 214 21 chr6 4201369 4201757 -185077797 - L1M4 LINE L1 -1371 4957 4495 616 232 112 21 chr6 4202280 4202565 -185076989 + L1ME4a LINE L1 5808 6118 -3 767 191 40 12 chr6 4203904 4204077 -185075477 + MER5B DNA MER1_type 1 178 0 400 195 0 37 chr6 4205236 4205318 -185074236 + MER21B LTR ERV1 12 90 -773 2739 228 55 50 chr6 4205340 4206159 -185073395 + MER21B LTR ERV1 19 841 -22 363 248 139 0 chr6 4206787 4206888 -185072666 + MIR SINE MIR 73 187 -75 368 273 169 23 chr6 4206962 4207134 -185072420 - MIR SINE MIR -43 219 23 2017 106 7 0 chr6 4207182 4207457 -185072097 - AluSx SINE Alu 0 312 36 485 263 79 7 chr6 4210152 4210304 -185069250 + MIR3 SINE MIR 24 186 -22 191 326 153 33 chr6 4210434 4210676 -185068878 + L2 LINE L2 2704 2974 -340 2376 87 7 3 chr6 4211497 4211795 -185067759 + AluSq SINE Alu 1 299 -14 3724 210 71 28 chr6 4211803 4213555 -185065999 - L1ME1 LINE L1 -5 6230 4400 534 217 129 42 chr6 4213626 4213843 -185065711 + MER106A DNA MER1_type 1 236 0 1740 309 22 18 chr6 4214048 4214758 -185064796 - L1ME1 LINE L1 -5607 789 77 259 297 76 0 chr6 4215021 4215139 -185064415 + L1MEd LINE L1 6 132 -5987 451 281 16 8 chr6 4215218 4215346 -185064208 + L2 LINE L2 3185 3313 0 988 284 66 33 chr6 4215621 4216078 -185063476 + L1MEd LINE L1 459 930 -5189 338 339 109 16 chr6 4216091 4216283 -185063271 + HAL1 LINE L1 1560 1769 -738 43276 34 25 1 chr6 4216344 4222349 -185057205 - L1PA3 LINE L1 0 6155 2 262 274 110 40 chr6 4222433 4222787 -185056767 + L1M4 LINE L1 4132 4510 -1636 2654 269 148 31 chr6 4222795 4223980 -185055574 - L2 LINE L2 -701 2613 1291 300 347 57 6 chr6 4223981 4224157 -185055397 + L1M4 LINE L1 4961 5145 -1001 1804 309 118 25 chr6 4224158 4224182 -185055372 + L2 LINE L2 1771 1791 -1523 4445 156 85 40 chr6 4224182 4225021 -185054533 + LTR13 LTR ERVK 1 886 -68 2201 103 0 3 chr6 4225021 4225331 -185054223 - AluY SINE Alu -2 309 1 4445 156 85 40 chr6 4225331 4225404 -185054150 + LTR13 LTR ERVK 886 954 0 16542 129 45 7 chr6 4225409 4227695 -185051859 - Tigger4(Zombi) DNA MER2_type 0 2731 328 549 0 0 0 chr6 4227695 4227756 -185051798 + (CA)n Simple_repeat Simple_repeat 2 62 0 16542 129 45 7 chr6 4227756 4228097 -185051457 - Tigger4(Zombi) DNA MER2_type -2403 328 2 1804 309 118 25 chr6 4228097 4229101 -185050453 + L2 LINE L2 1794 2901 -413 426 300 91 36 chr6 4229142 4229362 -185050192 + L2 LINE L2 3014 3245 -68 2240 225 100 26 chr6 4229494 4230653 -185048901 + L1ME2 LINE L1 4853 6130 -34 271 297 0 11 chr6 4230893 4230984 -185048570 + GA-rich Low_complexity Low_complexity 3 92 0 185 178 22 0 chr6 4231018 4231063 -185048491 + GA-rich Low_complexity Low_complexity 1 46 0 289 343 82 33 chr6 4231663 4231908 -185047646 - L2 LINE L2 -10 3262 3006 492 324 24 34 chr6 4232128 4232335 -185047219 + MIR SINE MIR 36 240 -22 1331 255 86 14 chr6 4233112 4233547 -185046007 - MLT1F LTR MaLR -18 524 24 1112 120 0 0 chr6 4233832 4234022 -185045532 - AluSg/x SINE Alu 0 316 127 238 292 124 29 chr6 4234388 4234525 -185045029 - MIR SINE MIR -79 183 34 328 302 13 13 chr6 4234969 4235128 -185044426 + CT-rich Low_complexity Low_complexity 1 159 0 2196 100 0 10 chr6 4236489 4236800 -185042754 - AluY SINE Alu -3 308 1 700 282 29 28 chr6 4237637 4238002 -185041552 + LTR16B LTR ERVL 34 451 -13 266 263 185 24 chr6 4238041 4238246 -185041308 - L2 LINE L2 -529 2785 2548 356 259 70 49 chr6 4238333 4238476 -185041078 + MIR3 SINE MIR 20 165 -43 378 181 14 0 chr6 4238517 4238589 -185040965 - L1MB3 LINE L1 -23 6160 6088 2524 166 32 11 chr6 4238716 4239185 -185040369 - L1MB3 LINE L1 -93 6090 5612 199 152 0 0 chr6 4239504 4239537 -185040017 + MIR3 SINE MIR 167 199 -9 381 311 40 20 chr6 4240501 4240652 -185038902 + LTR16A LTR ERVL 25 178 -272 874 238 123 53 chr6 4241251 4241683 -185037871 + LTR16B LTR ERVL 1 462 -2 213 232 29 58 chr6 4242214 4242283 -185037271 + L2 LINE L2 3132 3198 -74 1817 144 44 0 chr6 4242352 4242650 -185036904 - AluSx SINE Alu -1 311 1 320 271 34 126 chr6 4242837 4243187 -185036367 - L2 LINE L2 -37 3235 2918 5808 107 38 5 chr6 4243489 4243848 -185035706 - L1PA15 LINE L1 -5 6160 5814 387 0 0 0 chr6 4243848 4243891 -185035663 + (TG)n Simple_repeat Simple_repeat 2 44 0 5808 107 38 5 chr6 4243891 4244455 -185035099 - L1PA15 LINE L1 -351 5814 5213 426 94 0 0 chr6 4245241 4245305 -185034249 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3298 32 0 0 chr6 4245540 4245920 -185033634 + L1PA3 LINE L1 5775 6154 -1 397 232 13 73 chr6 4247035 4247186 -185032368 + MIR3 SINE MIR 10 151 -57 229 279 15 15 chr6 4247390 4247458 -185032096 - L2 LINE L2 0 3313 3246 2527 146 18 18 chr6 4249103 4249263 -185030291 - L1MB3 LINE L1 -2 6181 6022 1658 173 63 39 chr6 4249263 4249644 -185029910 - MLT1B LTR MaLR 0 390 1 2527 146 18 18 chr6 4249644 4249921 -185029633 - L1MB3 LINE L1 -160 6023 5744 247 333 23 0 chr6 4249967 4250054 -185029500 + L2 LINE L2 3184 3272 0 235 281 31 62 chr6 4250070 4250166 -185029388 - MIR SINE MIR -76 186 94 1051 189 19 0 chr6 4250418 4250630 -185028924 + MER20 DNA MER1_type 1 216 -3 506 260 73 50 chr6 4251203 4251422 -185028132 - MIR SINE MIR -14 248 25 2011 160 47 25 chr6 4251524 4251986 -185027568 - MLT2B1 LTR ERVL -1 514 1 897 217 84 57 chr6 4252512 4252844 -185026710 - LTR16A1 LTR ERVL 0 457 117 736 260 12 0 chr6 4255466 4255635 -185023919 - MER5A DNA MER1_type 0 189 19 338 273 102 8 chr6 4255747 4255875 -185023679 - MIR SINE MIR -69 193 54 256 259 71 0 chr6 4255868 4255953 -185023601 - MER5B DNA MER1_type -87 91 1 * 386 292 31 8 chr6 4256324 4256454 -185023100 - LTR33 LTR ERVL 0 521 389 489 255 64 64 chr6 4256487 4256570 -185022984 - LTR33 LTR ERVL -250 271 189 844 241 45 5 chr6 4256570 4256769 -185022785 + MER63A DNA MER1_type 4 210 0 489 255 64 64 chr6 4256769 4256889 -185022665 - LTR33 LTR ERVL -331 190 68 232 281 18 0 chr6 4257285 4257342 -185022212 - L2 LINE L2 -6 3266 3209 525 237 198 20 chr6 4257411 4257812 -185021742 - LTR33A LTR ERVL -5 518 2 2706 163 25 48 chr6 4257984 4258050 -185021504 - MLT2B2 LTR ERVL -2 513 447 1941 111 7 14 chr6 4258050 4258369 -185021185 - AluSx SINE Alu 0 317 1 2706 163 25 48 chr6 4258369 4258823 -185020731 - MLT2B2 LTR ERVL -68 447 3 311 272 39 19 chr6 4259065 4259168 -185020386 - MIR SINE MIR -67 141 37 600 262 13 13 chr6 4259500 4259649 -185019905 + MER63A DNA MER1_type 60 208 -2 766 224 13 69 chr6 4259918 4260150 -185019404 + MIR SINE MIR 44 262 0 510 296 96 50 chr6 4260277 4260557 -185018997 - L3 LINE CR1 -14 1563 1271 191 172 0 0 chr6 4260857 4260886 -185018668 - L3 LINE CR1 -303 1274 1246 299 256 80 16 chr6 4262211 4262336 -185017218 + L2 LINE L2 2132 2264 -1050 1861 140 146 3 chr6 4262420 4262763 -185016791 + Ricksha DNA DNA 30 421 -2825 243 288 85 25 chr6 4263024 4263142 -185016412 + L2 LINE L2 2648 2772 -542 371 244 17 122 chr6 4263150 4263275 -185016279 - MIR SINE MIR -4 258 154 2254 102 0 7 chr6 4263275 4263580 -185015974 - AluSx SINE Alu -9 303 1 371 244 17 122 chr6 4263580 4263626 -185015928 - MIR SINE MIR -108 154 105 217 305 40 46 chr6 4264234 4264385 -185015169 + L2 LINE L2 2919 3068 -204 315 245 91 42 chr6 4265048 4265191 -185014363 + MIR SINE MIR 83 232 -30 217 203 31 62 chr6 4265165 4265229 -185014325 + L2 LINE L2 3252 3313 0 * 1938 123 17 17 chr6 4265527 4265827 -185013727 + AluSq SINE Alu 1 300 -13 259 264 47 28 chr6 4266608 4266714 -185012840 - L3 LINE CR1 -390 1187 1080 268 281 170 0 chr6 4268071 4268183 -185011371 - MIR SINE MIR -71 137 15 200 326 84 21 chr6 4268342 4268437 -185011117 - MIR3 SINE MIR -102 106 6 297 235 47 12 chr6 4268449 4268534 -185011020 - MIR SINE MIR -69 139 52 388 234 171 0 chr6 4269585 4269696 -185009858 - MER91C DNA MER1_type -10 130 1 1405 149 54 0 chr6 4270946 4271187 -185008367 + AluJo SINE Alu 48 301 -11 1813 213 57 31 chr6 4271472 4271917 -185007637 + LTR10B LTR ERV1 1 547 0 9276 243 52 70 chr6 4271917 4275200 -185004354 + HERVI LTR ERV1 1 3223 -4562 9919 224 6 17 chr6 4275205 4277238 -185002316 + HERVI LTR ERV1 4354 6364 -285 681 328 0 0 chr6 4277844 4278042 -185001512 - MIR SINE MIR -5 257 60 245 252 37 37 chr6 4278103 4278210 -185001344 - L1ME4a LINE L1 -48 6073 5967 243 241 81 0 chr6 4278315 4278402 -185001152 - L1ME4a LINE L1 -319 5802 5709 503 209 73 72 chr6 4278406 4278639 -185000915 + MLT1H LTR MaLR 1 278 -271 259 176 189 0 chr6 4278778 4278852 -185000702 + MLT1G LTR MaLR 495 582 -8 237 287 96 37 chr6 4279161 4279297 -185000257 - L1ME4a LINE L1 -595 5526 5383 263 230 0 120 chr6 4279348 4279448 -185000106 - L1ME2 LINE L1 -138 6026 5939 1686 118 8 0 chr6 4279523 4279768 -184999786 - L1MA5A LINE L1 0 6297 6051 1360 150 0 5 chr6 4280269 4280482 -184999072 + AluSx SINE Alu 1 212 -100 365 121 0 0 chr6 4280483 4280541 -184999013 + AluYb8 SINE Alu 77 134 -174 2237 118 0 9 chr6 4280541 4280856 -184998698 + AluSq SINE Alu 1 312 -1 575 122 0 0 chr6 4280857 4280947 -184998607 - L1P LINE L1 -851 5295 5206 2799 46 3 6 chr6 4280947 4281270 -184998284 + L1PA8 LINE L1 5838 6165 -7 234 227 0 0 chr6 4281439 4281483 -184998071 + L2 LINE L2 3219 3262 -10 557 266 117 0 chr6 4281957 4282111 -184997443 - MIR3 SINE MIR -3 205 34 2206 203 40 143 chr6 4283198 4284509 -184995045 + L1ME3 LINE L1 4987 6153 -9 517 177 32 24 chr6 4284509 4284633 -184994921 + L1MB2 LINE L1 6047 6171 0 275 188 42 0 chr6 4284643 4284691 -184994863 + MLT1L LTR MaLR 337 386 -81 21 0 0 0 chr6 4284809 4284830 -184994724 + AT_rich Low_complexity Low_complexity 1 21 0 221 248 239 44 chr6 4285318 4285431 -184994123 - L2 LINE L2 0 3313 3179 495 205 94 60 chr6 4285749 4285983 -184993571 + MLT1L LTR MaLR 38 279 -336 323 284 118 6 chr6 4286038 4286207 -184993347 + MLT1L LTR MaLR 394 581 -34 483 289 8 0 chr6 4286635 4286756 -184992798 - MER5A DNA MER1_type -67 122 1 185 282 99 56 chr6 4286851 4286922 -184992632 + MIR SINE MIR 111 184 -78 298 271 232 22 chr6 4288943 4289124 -184990430 - MIR SINE MIR -38 224 6 210 214 18 36 chr6 4289158 4289214 -184990340 + L2 LINE L2 3215 3269 -3 183 129 0 0 chr6 4290088 4290119 -184989435 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 217 236 91 0 chr6 4290782 4290837 -184988717 + MIR SINE MIR 61 120 -142 803 174 0 0 chr6 4292594 4292715 -184986839 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr6 4292859 4292883 -184986671 + AT_rich Low_complexity Low_complexity 1 24 0 10006 159 7 31 chr6 4292943 4296025 -184983529 + L1PA8A LINE L1 5 3071 -3390 201 74 0 0 chr6 4296038 4296065 -184983489 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 18527 112 8 14 chr6 4296065 4298695 -184980859 + L1PA8A LINE L1 3051 5670 -776 2198 63 41 0 chr6 4298695 4298988 -184980566 + AluY SINE Alu 1 304 0 18527 112 8 14 chr6 4298988 4299749 -184979805 + L1PA8A LINE L1 5670 6434 -12 188 349 0 0 chr6 4299886 4299949 -184979605 - L2 LINE L2 -249 3064 3002 197 267 50 0 chr6 4300426 4300486 -184979068 + L2 LINE L2 3250 3312 -1 28 0 0 0 chr6 4300630 4300658 -184978896 + AT_rich Low_complexity Low_complexity 1 28 0 468 252 164 25 chr6 4300789 4300948 -184978606 + MER5A DNA MER1_type 9 189 0 664 52 0 0 chr6 4301493 4301570 -184977984 - MER4B LTR ERV1 0 610 534 251 250 0 0 chr6 4301582 4301634 -184977920 + LTR30 LTR ERV1 1 52 -670 1005 134 38 91 chr6 4301634 4301911 -184977643 + LTR12 LTR ERV1 55 230 -484 275 227 98 30 chr6 4301919 4302051 -184977503 + LTR12 LTR ERV1 142 282 -432 368 186 35 0 chr6 4302053 4302139 -184977415 + LTR30 LTR ERV1 551 639 -83 687 102 0 0 chr6 4302142 4302230 -184977324 + LTR12 LTR ERV1 478 565 -149 334 94 9 13 chr6 4302230 4302290 -184977264 - MLT2D LTR ERVL -370 44 1 457 284 99 12 chr6 4302531 4302693 -184976861 + MIR SINE MIR 8 183 -79 276 231 77 0 chr6 4302718 4302796 -184976758 - L2 LINE L2 -17 3296 3213 598 224 29 81 chr6 4303401 4303774 -184975780 + MLT1D LTR MaLR 20 356 -149 474 264 31 0 chr6 4303844 4303973 -184975581 + L1MEc LINE L1 1509 1641 -4755 361 286 119 30 chr6 4303976 4304144 -184975410 + MIR SINE MIR 68 250 -12 2470 123 37 13 chr6 4304378 4304759 -184974795 - MLT1B LTR MaLR 0 390 1 4860 265 63 34 chr6 4304956 4305796 -184973758 + L1MEc LINE L1 2112 2926 -3289 2109 105 44 0 chr6 4305796 4306092 -184973462 + AluY SINE Alu 1 309 -2 4860 265 63 34 chr6 4306092 4307541 -184972013 + L1MEc LINE L1 2926 4436 -1779 8875 223 70 42 chr6 4307549 4308792 -184970762 + L1MCb LINE L1 180 1387 -5177 1552 211 7 3 chr6 4308792 4309100 -184970454 + AluJo SINE Alu 1 309 -3 8875 223 70 42 chr6 4309100 4309446 -184970108 + L1MCb LINE L1 1387 1722 -4842 2203 138 53 28 chr6 4309446 4309801 -184969753 - THE1B LTR MaLR 0 364 1 8875 223 70 42 chr6 4309801 4312457 -184967097 + L1MCb LINE L1 1722 4630 -1934 2182 118 0 6 chr6 4312457 4312770 -184966784 + AluY SINE Alu 1 311 0 8875 223 70 42 chr6 4312770 4313528 -184966026 + L1MCb LINE L1 4630 5365 -1199 2305 78 0 7 chr6 4313598 4313905 -184965649 - AluSx SINE Alu 0 305 1 1123 8 0 0 chr6 4315552 4315672 -184963882 + 5S rRNA rRNA 1 120 -1 3713 50 2 0 chr6 4315672 4316134 -184963420 - Harlequin LTR ERV1 -6329 567 105 186 216 318 34 chr6 4316216 4316304 -184963250 + MER5A DNA MER1_type 1 113 -76 728 210 24 24 chr6 4316305 4316472 -184963082 + MER5A DNA MER1_type 1 167 -22 194 259 111 0 chr6 4316481 4316535 -184963019 + MER5A DNA MER1_type 110 169 -20 2598 192 65 2 chr6 4316931 4317451 -184962103 + MER74A LTR ERVL 6 558 0 291 329 81 13 chr6 4317852 4318001 -184961553 + MIR SINE MIR 100 258 -4 999 164 66 33 chr6 4318252 4318411 -184961143 + MER5A DNA MER1_type 1 168 -21 2098 135 66 14 chr6 4318411 4318758 -184960796 + MLT1A1 LTR MaLR 1 365 0 999 164 66 33 chr6 4318758 4318781 -184960773 + MER5A DNA MER1_type 168 189 0 1922 144 47 39 chr6 4319220 4319580 -184959974 - MLT1A1 LTR MaLR -2 363 1 497 194 10 10 chr6 4319988 4320091 -184959463 + MER5B DNA MER1_type 73 175 -3 2378 109 0 0 chr6 4320492 4320804 -184958750 - AluSx SINE Alu 0 312 1 2195 171 94 20 chr6 4321056 4321501 -184958053 + MLT2B2 LTR ERVL 1 478 -37 2095 74 4 4 chr6 4321936 4322206 -184957348 + AluSc SINE Alu 39 308 -1 1752 248 47 39 chr6 4322487 4322980 -184956574 + MLT1J LTR MaLR 7 503 -8 1223 174 43 13 chr6 4323138 4323368 -184956186 - MER96B DNA MER1_type? -180 237 1 262 171 0 0 chr6 4323856 4323897 -184955657 - 5S rRNA rRNA -79 42 2 306 0 0 0 chr6 4324141 4324175 -184955379 + (CA)n Simple_repeat Simple_repeat 1 34 0 2903 222 75 48 chr6 4324181 4324969 -184954585 + MER21B LTR ERV1 16 824 -39 4971 150 49 3 chr6 4325751 4326585 -184952969 + L1MA4A LINE L1 4443 5237 -1066 182 61 0 30 chr6 4326585 4326618 -184952936 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4971 150 49 3 chr6 4326618 4327414 -184952140 + L1MA4A LINE L1 5237 6143 -160 1531 181 69 0 chr6 4327414 4327691 -184951863 + AluJb SINE Alu 1 296 -16 1986 136 0 10 chr6 4327738 4328033 -184951521 - L1PB1 LINE L1 -1 6150 5859 2283 82 38 0 chr6 4328033 4328324 -184951230 + AluSg SINE Alu 1 302 -8 259 254 16 32 chr6 4328476 4328539 -184951015 - L1M3c LINE L1 -6078 63 2 291 200 125 0 chr6 4328555 4328635 -184950919 - L1MC3 LINE L1 -8 7777 7688 222 303 13 0 chr6 4328642 4328718 -184950836 - L2 LINE L2 -2382 932 856 996 255 111 12 chr6 4328727 4329052 -184950502 - MLT1I LTR MaLR -25 384 28 2658 283 27 35 chr6 4329053 4329879 -184949675 - L2 LINE L2 -2479 835 17 309 238 38 12 chr6 4330187 4330267 -184949287 - L2 LINE L2 -1877 1437 1356 757 252 59 64 chr6 4330280 4330660 -184948894 - L1M4 LINE L1 -1602 4544 4165 2314 109 0 3 chr6 4330660 4330971 -184948583 - AluSg SINE Alu 0 310 1 757 252 59 64 chr6 4330971 4331030 -184948524 - L1M4 LINE L1 -1981 4165 4107 313 287 39 62 chr6 4331042 4331300 -184948254 - L1MEd LINE L1 -5164 955 704 827 198 36 30 chr6 4331301 4331468 -184948086 - FRAM SINE Alu -16 160 1 269 279 51 0 chr6 4331468 4331547 -184948007 - L1MEd LINE L1 -5416 703 621 4522 169 52 6 chr6 4331680 4332500 -184947054 - L1MD1 LINE L1 0 6242 5385 1895 33 0 5 chr6 4332714 4332928 -184946626 - L1PA5 LINE L1 -3 6151 5939 1455 251 48 5 chr6 4332928 4333346 -184946208 - L1MD1 LINE L1 -745 5401 4966 1283 276 59 46 chr6 4333519 4334080 -184945474 + Charlie7 DNA MER1_type 120 687 -1925 490 239 39 72 chr6 4334096 4334276 -184945278 - MLT1J LTR MaLR -12 499 326 302 164 0 0 chr6 4334277 4334338 -184945216 - L1MC3 LINE L1 -727 7058 6998 * 857 54 1 1 chr6 4334313 4334338 -184945216 + L1P LINE L1 5225 5249 -897 1446 19 0 0 chr6 4334338 4334495 -184945059 - L1PA4 LINE L1 -5 6150 5994 857 54 1 1 chr6 4334495 4334599 -184944955 + L1P LINE L1 5248 5354 -792 180 0 0 0 chr6 4335364 4335384 -184944170 + (TG)n Simple_repeat Simple_repeat 2 21 0 325 181 38 9 chr6 4336214 4336319 -184943235 + (TA)n Simple_repeat Simple_repeat 1 108 0 323 299 132 29 chr6 4336632 4336806 -184942748 - MIR SINE MIR -1 261 70 182 36 0 36 chr6 4336952 4336980 -184942574 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1211 55 0 0 chr6 4336980 4337125 -184942429 - MER107 DNA MER1_type -52 145 1 460 236 9 9 chr6 4337165 4337271 -184942283 + MER5B DNA MER1_type 73 178 0 334 307 9 0 chr6 4337544 4337658 -184941896 + L1ME LINE L1 5458 5572 -598 22 0 0 0 chr6 4337826 4337848 -184941706 + AT_rich Low_complexity Low_complexity 1 22 0 813 139 12 78 chr6 4338193 4338359 -184941195 + AluJo SINE Alu 85 239 -73 326 181 0 14 chr6 4338394 4338466 -184941088 + GA-rich Low_complexity Low_complexity 4 74 0 261 139 0 0 chr6 4338565 4338608 -184940946 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1991 254 75 34 chr6 4338873 4339731 -184939823 + L1MEc LINE L1 499 1391 -5005 275 259 76 0 chr6 4340542 4340673 -184938881 - L1ME4a LINE L1 -3 6118 5978 275 177 51 0 chr6 4340996 4341075 -184938479 + (TAA)n Simple_repeat Simple_repeat 1 83 0 324 286 9 108 chr6 4341129 4341342 -184938212 - L1M4 LINE L1 -2055 4091 3900 269 324 59 0 chr6 4341555 4341657 -184937897 - L2 LINE L2 -932 2382 2275 278 296 241 0 chr6 4342288 4342396 -184937158 - MIR SINE MIR -77 185 52 235 274 71 36 chr6 4342485 4342569 -184936985 - MIR SINE MIR -58 204 118 509 270 77 62 chr6 4343410 4343669 -184935885 - MLT1J LTR MaLR -4 507 245 1954 192 25 25 chr6 4344014 4344379 -184935175 - MLT1A1 LTR MaLR 0 365 1 229 255 177 21 chr6 4344381 4344522 -184935032 - L2 LINE L2 -11 3302 3140 703 241 294 0 chr6 4345477 4345797 -184933757 + Charlie2a DNA MER1_type 7 420 -2442 898 246 29 14 chr6 4345831 4346107 -184933447 + Charlie2a DNA MER1_type 738 1017 -1845 420 182 0 23 chr6 4346104 4346192 -184933362 + Charlie2a DNA MER1_type 2748 2833 -29 * 207 219 162 57 chr6 4347287 4347392 -184932162 - L2 LINE L2 -2 3270 3155 245 278 0 0 chr6 4348564 4348636 -184930918 + tRNA-Ile-ATT tRNA tRNA 3 74 -3 234 216 0 0 chr6 4349981 4350032 -184929522 + MER116 DNA Mariner 25 75 -5 1778 175 3 19 chr6 4350119 4350427 -184929127 + AluJo SINE Alu 1 303 -9 693 294 58 39 chr6 4350436 4350817 -184928737 + L1ME4a LINE L1 5377 5764 -357 408 327 62 34 chr6 4350822 4351030 -184928524 + MIR SINE MIR 13 226 -36 332 212 73 53 chr6 4351208 4351359 -184928195 + L1ME4a LINE L1 5964 6117 -4 1881 137 135 83 chr6 4351761 4352205 -184927349 + MLT1C LTR MaLR 1 467 0 1681 167 50 83 chr6 4352707 4353091 -184926463 + MLT1A2 LTR MaLR 4 374 0 600 274 71 56 chr6 4353156 4353356 -184926198 - MLT1J LTR MaLR -238 273 67 2204 111 20 0 chr6 4353356 4353662 -184925892 - AluSx SINE Alu 0 312 1 600 274 71 56 chr6 4353662 4353713 -184925841 - MLT1J LTR MaLR -444 67 18 198 277 241 9 chr6 4354179 4354291 -184925263 + MIR3 SINE MIR 19 156 -52 701 271 35 66 chr6 4354378 4354819 -184924735 + LTR35 LTR ERV1 134 556 0 2233 106 0 28 chr6 4355577 4355898 -184923656 - AluSq SINE Alu -1 312 1 280 200 18 0 chr6 4356144 4356199 -184923355 + L2 LINE L2 3257 3312 -1 386 264 157 31 chr6 4356638 4356797 -184922757 - MER5A DNA MER1_type -6 183 5 3659 7 0 3 chr6 4357011 4357554 -184922000 + L1P1 LINE L1 5119 5660 -495 185 74 56 37 chr6 4357558 4357612 -184921942 + A-rich Low_complexity Low_complexity 1 55 0 410 151 0 27 chr6 4358113 4358186 -184921368 - MER20 DNA MER1_type 0 219 149 4831 100 14 5 chr6 4358186 4358824 -184920730 - LTR9B LTR ERV1 0 644 1 3468 128 16 15 chr6 4358837 4359383 -184920171 + LTR10A LTR ERV1 1 547 -62 716 154 0 99 chr6 4359394 4359556 -184919998 - MER20 DNA MER1_type -73 146 1 305 217 85 40 chr6 4361021 4361171 -184918383 + L1ME4a LINE L1 5698 5854 -267 363 276 20 53 chr6 4361209 4361361 -184918193 + L1ME4a LINE L1 5975 6121 0 1099 189 112 18 chr6 4361400 4361897 -184917657 + MLT1E1 LTR MaLR 3 654 0 339 314 69 36 chr6 4362172 4362449 -184917105 + L2 LINE L2 1103 1388 -1926 5188 100 10 13 chr6 4362529 4363222 -184916332 - LTR8 LTR ERV1 0 691 1 1122 265 21 4 chr6 4363380 4363659 -184915895 - MER87 LTR ERV1 -48 493 210 245 292 124 11 chr6 4363731 4363820 -184915734 - LTR8 LTR ERV1 -566 125 27 466 306 165 16 chr6 4363877 4364448 -184915106 + L2 LINE L2 1614 2269 -1045 268 348 24 40 chr6 4364448 4364626 -184914928 + L2 LINE L2 2457 2631 -683 749 202 60 24 chr6 4364626 4364794 -184914760 + MER5B DNA MER1_type 1 174 -4 268 348 24 40 chr6 4364794 4364868 -184914686 + L2 LINE L2 2631 2705 -609 764 219 0 0 chr6 4364876 4364999 -184914555 + FLAM_C SINE Alu 1 123 -10 1223 205 73 14 chr6 4365031 4365319 -184914235 - MLT1A2 LTR MaLR -66 308 4 197 325 93 73 chr6 4365463 4365614 -184913940 + L2 LINE L2 3108 3261 -11 481 285 8 0 chr6 4365835 4365965 -184913589 + MIR SINE MIR 88 218 -44 1060 152 12 0 chr6 4366907 4367071 -184912483 - AluJb SINE Alu -146 166 1 1891 205 21 36 chr6 4367074 4367547 -184912007 - L1 LINE L1 -817 5329 4864 778 185 25 37 chr6 4367550 4367712 -184911842 - MLT1A2 LTR MaLR -214 160 1 776 135 0 0 chr6 4368989 4369100 -184910454 + L1 LINE L1 4864 4974 -1172 545 42 14 0 chr6 4370543 4370615 -184908939 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 468 48 0 0 chr6 4370839 4370902 -184908652 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 261 0 0 chr6 4371369 4371415 -184908139 + (TA)n Simple_repeat Simple_repeat 1 46 0 1360 177 129 33 chr6 4371434 4371768 -184907786 - MLT2D LTR ERVL -48 366 1 2068 111 4 0 chr6 4371908 4372187 -184907367 + AluSx SINE Alu 16 295 -17 273 230 115 35 chr6 4372584 4372671 -184906883 - L2 LINE L2 -8 3305 3212 373 289 39 27 chr6 4372744 4373007 -184906547 + L2 LINE L2 2711 2977 -336 2554 217 60 19 chr6 4373230 4373793 -184905761 - MLT1E LTR MaLR 0 593 8 239 293 135 30 chr6 4374902 4375035 -184904519 + MIR SINE MIR 21 167 -95 3083 145 25 33 chr6 4375127 4375678 -184903876 + LTR10A LTR ERV1 1 547 -62 2065 173 138 50 chr6 4376098 4376600 -184902954 - LTR10B LTR ERV1 -1 546 1 1911 155 54 57 chr6 4376643 4377029 -184902525 - MLT1B LTR MaLR -5 385 1 1678 175 22 0 chr6 4378469 4378743 -184900811 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr6 4378743 4378764 -184900790 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 981 191 5 5 chr6 4378979 4379167 -184900387 - MER53 DNA DNA 0 189 2 263 261 142 30 chr6 4379326 4379460 -184900094 - MLT1L LTR MaLR -49 566 418 2551 69 0 0 chr6 4379858 4380161 -184899393 - AluSc SINE Alu -6 303 1 2483 74 0 16 chr6 4380163 4380472 -184899082 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 4380474 4380496 -184899058 + AT_rich Low_complexity Low_complexity 1 22 0 1631 68 42 13 chr6 4380496 4380732 -184898822 - L1MA1 LINE L1 0 6302 6060 202 309 62 0 chr6 4381617 4381698 -184897856 + MIR SINE MIR 45 130 -78 628 231 158 60 chr6 4381698 4382066 -184897488 - MLT1J LTR MaLR 0 511 108 285 253 13 0 chr6 4382218 4382297 -184897257 - L2 LINE L2 0 3313 3234 2227 101 30 0 chr6 4382549 4382845 -184896709 + AluSc SINE Alu 1 305 -4 610 329 43 37 chr6 4383060 4383434 -184896120 + L1ME4a LINE L1 5518 5893 -228 2167 109 0 0 chr6 4383463 4383738 -184895816 - AluSg SINE Alu -34 276 2 190 286 0 16 chr6 4384368 4384431 -184895123 - L2 LINE L2 -73 3199 3138 1929 159 3 0 chr6 4384661 4384956 -184894598 - AluJo SINE Alu -16 296 1 375 274 149 23 chr6 4385122 4385337 -184894217 - MIR SINE MIR -1 261 20 290 252 19 37 chr6 4385341 4385465 -184894089 - MIR3 SINE MIR -46 162 63 1039 200 33 79 chr6 4385998 4386328 -184893226 + L1MA10 LINE L1 6018 6332 -2 1260 197 24 14 chr6 4386347 4386636 -184892918 + L1MB8 LINE L1 5881 6172 -6 390 274 143 6 chr6 4386683 4386858 -184892696 + MARNA DNA Mariner 211 409 -177 412 264 104 42 chr6 4386987 4387180 -184892374 + MIR SINE MIR 58 262 0 2532 170 25 48 chr6 4388554 4389114 -184890440 - L1MA10 LINE L1 -1 6333 5787 1200 182 18 1 chr6 4389116 4389421 -184890133 - MER2 DNA MER2_type -1 344 1 1207 124 23 0 chr6 4389425 4389602 -184889952 - L1MA10 LINE L1 -552 5782 5602 2322 155 38 5 chr6 4389606 4390032 -184889522 - L1MB3 LINE L1 -2 6181 5742 419 265 8 17 chr6 4390039 4390156 -184889398 + Charlie8 DNA MER1_type 91 206 -2211 306 334 175 16 chr6 4390702 4391010 -184888544 - L3b LINE CR1 -125 1458 1102 504 222 163 7 chr6 4391540 4391693 -184887861 + MER5A DNA MER1_type 13 189 0 366 169 0 0 chr6 4392256 4392315 -184887239 + MER20 DNA MER1_type 159 217 -2 273 61 0 0 chr6 4392362 4392395 -184887159 + MLT1B LTR MaLR 1 33 -357 375 265 48 78 chr6 4392397 4392523 -184887031 + L2 LINE L2 1521 1642 -1672 1059 188 32 37 chr6 4392523 4392741 -184886813 + MER20 DNA MER1_type 1 217 -2 375 265 48 78 chr6 4392741 4392780 -184886774 + L2 LINE L2 1642 1681 -1633 1325 184 126 36 chr6 4392788 4392960 -184886594 + MLT1B LTR MaLR 1 156 -234 189 0 0 0 chr6 4392960 4392981 -184886573 + (TC)n Simple_repeat Simple_repeat 2 22 0 1325 184 126 36 chr6 4392981 4393166 -184886388 + MLT1B LTR MaLR 156 390 0 1469 249 29 31 chr6 4393193 4393249 -184886305 + L1ME1 LINE L1 5742 5797 -369 1870 137 67 25 chr6 4393249 4393607 -184885947 - THE1C LTR MaLR 0 375 3 9616 125 26 38 chr6 4393609 4395204 -184884350 - THE1C-int LTR MaLR 0 1580 4 1603 149 109 34 chr6 4395207 4395556 -184883998 - THE1C LTR MaLR 0 375 1 1469 249 29 31 chr6 4395556 4395913 -184883641 + L1ME1 LINE L1 5800 6161 -5 953 290 172 18 chr6 4395955 4396795 -184882759 + L2 LINE L2 1706 2686 -628 1752 183 93 11 chr6 4396795 4397161 -184882393 + MSTD LTR MaLR 1 396 0 953 290 172 18 chr6 4397161 4397193 -184882361 + L2 LINE L2 2686 2712 -602 2252 95 3 0 chr6 4397514 4397822 -184881732 + AluSq SINE Alu 1 309 0 238 274 59 0 chr6 4399864 4399966 -184879588 + L1ME LINE L1 5692 5799 -363 1200 128 12 0 chr6 4400125 4400297 -184879257 + AluSg/x SINE Alu 139 312 0 283 198 244 0 chr6 4400460 4400546 -184879008 + HsTC2 DNA Tc2 28 134 -1764 * 544 167 49 42 chr6 4400545 4400689 -184878865 + HsTC2 DNA Tc2 1647 1791 -107 474 243 126 14 chr6 4400690 4400955 -184878599 + L2 LINE L2 2702 3006 -307 1114 257 119 48 chr6 4401115 4401745 -184877809 + L1MC4 LINE L1 7367 8041 -1 454 296 21 0 chr6 4403806 4403948 -184875606 + MIR SINE MIR 80 224 -38 491 201 79 126 chr6 4404277 4404491 -184875063 + MIR SINE MIR 51 254 -8 2145 58 91 4 chr6 4405794 4406069 -184873485 - AluY SINE Alu -12 299 1 3427 54 16 16 chr6 4407041 4407485 -184872069 + L1PA8 LINE L1 5726 6169 -3 453 317 0 12 chr6 4407583 4407744 -184871810 - MIR SINE MIR -6 256 98 288 304 53 70 chr6 4408937 4409108 -184870446 - MER5B DNA MER1_type -7 171 4 395 233 0 0 chr6 4409585 4409658 -184869896 + Tigger3(Golem) DNA MER2_type 3 75 -2954 611 196 0 0 chr6 4409658 4409765 -184869789 - FLAM_C SINE Alu -35 108 2 475 217 57 23 chr6 4409767 4409942 -184869612 + L1ME1 LINE L1 4279 4459 -1687 * 1391 226 72 24 chr6 4409928 4410074 -184869480 + L1ME1 LINE L1 5643 5781 -385 2236 150 25 34 chr6 4410074 4410481 -184869073 - MER57A LTR ERV1 0 403 1 1391 226 72 24 chr6 4410481 4410749 -184868805 + L1ME1 LINE L1 5781 6077 -89 1518 201 43 23 chr6 4410781 4411179 -184868375 + MER97b DNA MER1_type? 454 859 -194 379 185 46 28 chr6 4411411 4411519 -184868035 + L1 LINE L1 4884 4993 -1153 363 269 36 16 chr6 4411546 4411726 -184867828 + L1M4b LINE L1 24 487 -6368 230 217 14 14 chr6 4411831 4411900 -184867654 + (TA)n Simple_repeat Simple_repeat 1 69 0 2028 157 26 103 chr6 4411900 4412128 -184867426 + Tigger2a DNA MER2_type 1 176 -2532 2044 123 4 0 chr6 4412128 4412405 -184867149 - AluSx SINE Alu -30 282 5 2028 157 26 103 chr6 4412405 4412641 -184866913 + Tigger2a DNA MER2_type 176 429 -5 797 181 6 19 chr6 4412865 4413025 -184866529 + L1MB7 LINE L1 15 172 -6370 * 13965 153 38 10 chr6 4413018 4415284 -184864270 + L1M1 LINE L1 1361 3752 -3813 1782 152 0 4 chr6 4415284 4415568 -184863986 + AluSx SINE Alu 28 310 0 13965 153 38 10 chr6 4415568 4416679 -184862875 + L1M1 LINE L1 3752 4831 -2734 1280 158 27 97 chr6 4416676 4416917 -184862637 + L1MB7 LINE L1 901 1114 -5428 * 2369 84 3 0 chr6 4416917 4417213 -184862341 - AluY SINE Alu -14 297 1 1280 158 27 97 chr6 4417213 4417300 -184862254 + L1MB7 LINE L1 1114 1206 -5336 2008 204 42 8 chr6 4418529 4419005 -184860549 + L1MB7 LINE L1 1188 1679 -4863 3464 199 60 12 chr6 4419019 4419802 -184859752 - MER21B LTR ERV1 0 863 2 1441 235 48 29 chr6 4419803 4420279 -184859275 + L1MB7 LINE L1 1685 2169 -4477 1246 276 10 17 chr6 4420667 4421149 -184858405 + L1MB7 LINE L1 2268 2746 -3900 5723 127 41 7 chr6 4421149 4422266 -184857288 + L1PB3 LINE L1 5006 6154 0 1633 158 18 40 chr6 4422281 4422559 -184856995 + AluSx SINE Alu 1 272 -40 221 0 0 33 chr6 4422575 4422605 -184856949 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 585 211 62 23 chr6 4422756 4422884 -184856670 + AluJo SINE Alu 3 135 -177 9434 199 52 32 chr6 4422898 4424420 -184855134 + L1MB7 LINE L1 2732 4222 -2460 203 61 30 0 chr6 4424420 4424453 -184855101 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1662 189 4 0 chr6 4424455 4424735 -184854819 - AluJb SINE Alu -31 281 1 9434 199 52 32 chr6 4424735 4425125 -184854429 + L1MB7 LINE L1 4222 4603 -2079 237 65 0 0 chr6 4425125 4425156 -184854398 + (CA)n Simple_repeat Simple_repeat 2 32 0 9434 199 52 32 chr6 4425156 4426885 -184852669 + L1MB7 LINE L1 4603 6545 -137 621 72 0 0 chr6 4426885 4426968 -184852586 + (TG)n Simple_repeat Simple_repeat 1 83 0 9434 199 52 32 chr6 4426968 4427090 -184852464 + L1MB7 LINE L1 6545 6663 -19 4462 226 42 46 chr6 4427308 4428069 -184851485 + L1MD3 LINE L1 3239 4001 -2145 186 43 0 0 chr6 4428069 4428092 -184851462 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2264 110 0 0 chr6 4428092 4428391 -184851163 - AluSx SINE Alu -13 299 1 4462 226 42 46 chr6 4428391 4428695 -184850859 + L1MD3 LINE L1 4000 4304 -1842 2453 146 50 8 chr6 4428695 4429073 -184850481 + MSTD LTR MaLR 1 394 -2 4462 226 42 46 chr6 4429073 4429380 -184850174 + L1MD3 LINE L1 4304 4608 -1538 6171 155 45 8 chr6 4429386 4431216 -184848338 + L1MA8 LINE L1 4287 6290 -1 2458 211 47 77 chr6 4431220 4432080 -184847474 + L1MD3 LINE L1 4610 5439 -727 293 210 200 10 chr6 4432084 4432184 -184847370 + FLAM_A SINE Alu 6 124 -9 3200 245 117 29 chr6 4432186 4433451 -184846103 + L1MD3 LINE L1 5435 6811 -1184 769 235 107 38 chr6 4433461 4433750 -184845804 + L2 LINE L2 3005 3313 0 758 242 82 6 chr6 4433904 4434086 -184845468 - MER91A DNA MER1_type 0 196 1 4235 152 31 11 chr6 4435316 4436060 -184843494 + L1MB3 LINE L1 5289 6047 -136 665 292 79 46 chr6 4436060 4436491 -184843063 + L1ME4a LINE L1 5526 5970 -151 233 221 58 0 chr6 4436504 4436590 -184842964 + L1ME4a LINE L1 6031 6121 0 6121 66 15 4 chr6 4437044 4437800 -184841754 + L1PA7 LINE L1 5383 6146 -8 186 71 0 0 chr6 4437805 4437833 -184841721 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 333 157 49 10 chr6 4437898 4438000 -184841554 + CT-rich Low_complexity Low_complexity 1 106 0 769 307 66 0 chr6 4438942 4439183 -184840371 + MIR SINE MIR 1 257 -5 1193 118 6 0 chr6 4439202 4439363 -184840191 + AluSx SINE Alu 1 162 -150 225 325 79 0 chr6 4440821 4440935 -184838619 + L2 LINE L2 2916 3038 -234 343 307 62 20 chr6 4441025 4441183 -184838371 + MIR SINE MIR 30 191 -66 230 283 97 21 chr6 4441392 4441537 -184838017 - MER5B DNA MER1_type -2 176 21 204 229 33 33 chr6 4441557 4441618 -184837936 + CT-rich Low_complexity Low_complexity 6 66 0 240 289 29 29 chr6 4442242 4442346 -184837208 + L2 LINE L2 2935 3038 -234 2013 108 52 3 chr6 4444091 4444377 -184835177 + AluSx SINE Alu 1 300 -12 199 154 0 26 chr6 4444966 4445005 -184834549 - L2 LINE L2 -79 3234 3197 792 128 21 14 chr6 4445255 4445396 -184834158 + L1MA8 LINE L1 6146 6287 -4 1780 130 19 52 chr6 4445404 4445711 -184833843 + AluSx SINE Alu 1 297 -15 1653 76 23 2 chr6 4446291 4446670 -184832884 - MLT2A2 LTR ERVL 0 453 1 350 254 0 18 chr6 4448005 4448170 -184831384 + (GTATG)n Simple_repeat Simple_repeat 3 164 0 432 239 150 60 chr6 4448369 4448536 -184831018 - MIR SINE MIR -31 231 50 450 311 0 16 chr6 4449265 4449448 -184830106 + (CA)n Simple_repeat Simple_repeat 1 180 0 275 275 0 13 chr6 4449641 4449790 -184829764 + (GTATG)n Simple_repeat Simple_repeat 1 147 0 267 294 0 0 chr6 4450899 4450967 -184828587 + (GCATG)n Simple_repeat Simple_repeat 5 72 0 346 218 141 54 chr6 4451212 4451407 -184828147 - MIR SINE MIR -29 233 16 716 262 83 78 chr6 4451673 4452081 -184827473 - MLT1J LTR MaLR -78 433 24 2561 120 10 10 chr6 4452555 4452939 -184826615 + MLT1B LTR MaLR 7 390 0 1506 160 94 0 chr6 4454098 4454354 -184825200 + AluJo SINE Alu 1 280 -32 2059 117 7 3 chr6 4454394 4454692 -184824862 + AluSc SINE Alu 1 299 -10 219 333 167 0 chr6 4455147 4455267 -184824287 + MIR3 SINE MIR 51 190 -18 1027 238 19 0 chr6 4456141 4456347 -184823207 - MER63A DNA MER1_type 0 210 1 184 267 0 0 chr6 4457283 4457328 -184822226 + L2 LINE L2 3269 3313 0 32 0 0 0 chr6 4458818 4458850 -184820704 + AT_rich Low_complexity Low_complexity 1 32 0 250 256 168 57 chr6 4459229 4459526 -184820028 - L1MEd LINE L1 -3222 2907 2578 317 274 79 66 chr6 4459563 4459671 -184819883 - L1MEd LINE L1 -3636 2493 2388 2143 129 3 0 chr6 4459671 4459980 -184819574 - AluSx SINE Alu -2 310 1 317 274 79 66 chr6 4459980 4460174 -184819380 - L1MEd LINE L1 -3741 2388 2187 1964 141 30 3 chr6 4460188 4460492 -184819062 + AluJb SINE Alu 1 312 0 514 295 76 55 chr6 4461033 4461491 -184818063 - HAL1 LINE L1 -742 1765 1298 288 171 0 0 chr6 4461500 4461541 -184818013 - Tigger5 DNA MER2_type 0 2323 2283 256 233 0 0 chr6 4461549 4461592 -184817962 + Tigger5 DNA MER2_type 2278 2320 -3 * 326 247 0 27 chr6 4461592 4461661 -184817893 - Tigger5 DNA MER2_type -2256 67 1 357 300 66 37 chr6 4461702 4461945 -184817609 - L1MEd LINE L1 -4975 1144 895 1764 136 0 8 chr6 4462131 4462388 -184817166 + AluSx SINE Alu 43 297 -15 3053 25 3 0 chr6 4462388 4462745 -184816809 - L1PA3 LINE L1 -1005 5141 4784 8294 22 0 0 chr6 4462745 4463817 -184815737 + L1PA3 LINE L1 5141 6209 0 333 157 49 10 chr6 4463853 4463955 -184815599 + CT-rich Low_complexity Low_complexity 1 106 0 807 299 66 0 chr6 4464897 4465138 -184814416 + MIR SINE MIR 1 257 -5 1769 154 4 7 chr6 4465157 4465436 -184814118 + AluJb SINE Alu 1 278 -34 446 0 19 0 chr6 4465439 4465493 -184814061 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 185 274 171 77 chr6 4465518 4466125 -184813429 + L2 LINE L2 2167 2830 -484 395 328 100 45 chr6 4466152 4466463 -184813091 + L2 LINE L2 2922 3249 -23 506 262 56 76 chr6 4466687 4466863 -184812691 + L1MC/D LINE L1 5196 5374 -1024 1629 185 3 27 chr6 4466863 4467160 -184812394 - AluJb SINE Alu -22 290 1 506 262 56 76 chr6 4467160 4467427 -184812127 + L1MC/D LINE L1 5374 5622 -776 402 255 80 92 chr6 4467738 4467989 -184811565 + MLT1L LTR MaLR 10 257 -358 2839 218 174 55 chr6 4468040 4468986 -184810568 + L1MC4a LINE L1 6442 7500 -308 2162 121 0 0 chr6 4469040 4469348 -184810206 + AluSx SINE Alu 1 308 0 374 280 9 9 chr6 4469380 4469487 -184810067 + L1MC4 LINE L1 7795 7901 -141 234 180 0 66 chr6 4469488 4469549 -184810005 + L1MC4 LINE L1 7986 8042 0 286 279 240 6 chr6 4469725 4469904 -184809650 + MLT1L LTR MaLR 395 615 0 2815 19 0 6 chr6 4470007 4470323 -184809231 + AluYb8 SINE Alu 1 314 -4 528 209 34 155 chr6 4470787 4470823 -184808731 + L1MC4 LINE L1 6509 6548 -1494 2148 93 0 10 chr6 4470823 4471114 -184808440 + AluSx SINE Alu 1 288 -24 528 209 34 155 chr6 4471114 4471374 -184808180 + L1MC4 LINE L1 6548 6769 -1273 299 284 101 47 chr6 4471680 4471828 -184807726 + L2 LINE L2 3109 3264 -8 633 192 0 48 chr6 4472461 4472586 -184806968 - MLT1E2 LTR MaLR -3 623 505 1434 164 34 74 chr6 4472586 4472681 -184806873 - AluJo SINE Alu 0 312 215 4610 104 30 47 chr6 4472681 4473384 -184806170 + LTR8 LTR ERV1 1 691 0 1434 164 34 74 chr6 4473384 4473611 -184805943 - AluJo SINE Alu -97 215 3 1593 240 109 27 chr6 4473613 4474088 -184805466 - MLT1E2 LTR MaLR -112 514 1 791 189 0 0 chr6 4474406 4474538 -184805016 + FLAM_C SINE Alu 2 133 0 237 247 148 0 chr6 4475019 4475100 -184804454 - L2 LINE L2 -36 3277 3185 1811 179 43 93 chr6 4476382 4476867 -184802687 - MLT2C2 LTR ERVL -3 461 1 389 294 62 20 chr6 4478160 4478306 -184801248 - L2 LINE L2 0 3272 3121 369 62 0 0 chr6 4478318 4478366 -184801188 + (ATG)n Simple_repeat Simple_repeat 3 50 0 736 207 0 0 chr6 4480541 4480676 -184798878 + FLAM_C SINE Alu 2 136 -7 573 306 120 0 chr6 4480690 4480906 -184798648 + MIR SINE MIR 20 261 -1 507 270 199 5 chr6 4482320 4482516 -184797038 + MIR SINE MIR 2 235 -27 * 788 226 37 26 chr6 4482514 4482704 -184796850 + MIR SINE MIR 68 259 -3 321 179 0 0 chr6 4482709 4482793 -184796761 + (ATG)n Simple_repeat Simple_repeat 1 84 0 1190 213 49 4 chr6 4482814 4483058 -184796496 - LTR8 LTR ERV1 -436 255 1 377 216 14 0 chr6 4483060 4483134 -184796420 + MER5A DNA MER1_type 16 90 -99 854 251 117 42 chr6 4484255 4484657 -184794897 - L1ME3A LINE L1 -130 6032 5601 5618 101 15 16 chr6 4484664 4485327 -184794227 - L1PB1 LINE L1 0 6151 5488 1854 129 3 24 chr6 4485327 4485646 -184793908 - AluSx SINE Alu 0 312 1 5618 101 15 16 chr6 4485646 4485842 -184793712 - L1PB1 LINE L1 -663 5488 5293 1936 67 0 0 chr6 4485855 4486093 -184793461 - LTR17 LTR ERV1 -454 326 89 8257 197 13 38 chr6 4486095 4487923 -184791631 - L1PB1 LINE L1 -852 5294 3516 2248 93 0 0 chr6 4487923 4488223 -184791331 - AluY SINE Alu -11 300 1 8257 197 13 38 chr6 4488223 4488347 -184791207 - L1PB1 LINE L1 -2630 3516 3390 580 268 46 15 chr6 4488459 4488782 -184790772 - L1ME3A LINE L1 -641 5525 5195 2146 111 0 7 chr6 4489482 4489788 -184789766 - AluSx SINE Alu -8 304 1 3041 159 46 9 chr6 4489792 4490376 -184789178 - L1MB3 LINE L1 -1 6182 5577 501 286 12 42 chr6 4490488 4490656 -184788898 - MIR3 SINE MIR 0 208 46 333 0 0 0 chr6 4491054 4491091 -184788463 + (CA)n Simple_repeat Simple_repeat 2 38 0 205 184 26 0 chr6 4491765 4491803 -184787751 + MIR SINE MIR 108 146 -62 359 320 153 0 chr6 4492726 4492876 -184786678 - MER5B DNA MER1_type -5 173 1 249 243 49 53 chr6 4493247 4493418 -184786136 - MIR SINE MIR -50 212 43 438 209 12 0 chr6 4493532 4493618 -184785936 - MER81 DNA DNA -8 106 20 296 188 29 14 chr6 4494044 4494113 -184785441 - Charlie4a DNA MER1_type 0 508 439 1783 183 7 0 chr6 4494113 4494525 -184785029 - AluJb SINE Alu 0 414 1 1533 204 90 0 chr6 4494566 4494910 -184784644 - Charlie4a DNA MER1_type -133 375 1 1595 244 40 14 chr6 4495036 4495478 -184784076 + MLT1C LTR MaLR 1 654 0 214 297 48 69 chr6 4495810 4495955 -184783599 - MIR3 SINE MIR -7 201 60 277 233 78 33 chr6 4496367 4496457 -184783097 - LTR16A1 LTR ERVL -30 427 334 303 274 0 0 chr6 4496563 4496636 -184782918 - MER63 DNA MER1_type -11 1050 978 458 147 0 40 chr6 4496638 4496713 -184782841 - MER63 DNA MER1_type -312 749 678 259 288 0 0 chr6 4497788 4497868 -184781686 + MER116 DNA Mariner 1 80 0 300 330 93 8 chr6 4498007 4498125 -184781429 + MIR3 SINE MIR 12 139 -69 1102 152 39 30 chr6 4499288 4499506 -184780048 + L1MB3 LINE L1 5854 6100 -71 1500 202 3 3 chr6 4499506 4499798 -184779756 + AluJo SINE Alu 6 297 -15 1102 152 39 30 chr6 4499798 4499869 -184779685 + L1MB3 LINE L1 6100 6169 -2 265 367 101 0 chr6 4501443 4501552 -184778002 + L2 LINE L2 3152 3271 -1 306 0 0 0 chr6 4502070 4502104 -184777450 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 56 0 0 chr6 4502223 4502313 -184777241 + Alu SINE Alu 221 310 0 678 244 130 28 chr6 4503829 4504153 -184775401 + LTR33A LTR ERVL 159 515 -8 525 178 0 0 chr6 4504410 4504500 -184775054 - LTR12 LTR ERV1 0 714 625 306 185 29 27 chr6 4504500 4504602 -184774952 - LTR30 LTR ERV1 -92 614 378 273 145 0 65 chr6 4504602 4504664 -184774890 - LTR12 LTR ERV1 -429 285 228 970 162 96 21 chr6 4504721 4504944 -184774610 - LTR12 LTR ERV1 -480 1683 55 274 231 0 0 chr6 4504944 4504996 -184774558 - LTR30 LTR ERV1 -670 52 1 2226 106 0 0 chr6 4505563 4505864 -184773690 - AluSq SINE Alu -12 301 1 347 141 31 0 chr6 4506164 4506228 -184773326 + Alu SINE Alu 235 300 -2 2503 154 55 20 chr6 4506355 4506795 -184772759 - MLT1C LTR MaLR 0 467 13 1677 208 28 48 chr6 4506813 4507207 -184772347 - MLT1C-int LTR MaLR -14 1357 972 2321 108 95 63 chr6 4507732 4508195 -184771359 + L1MA7 LINE L1 5813 6290 -1 1485 159 116 0 chr6 4508205 4508463 -184771091 + AluJb SINE Alu 1 288 -24 344 327 68 19 chr6 4508682 4508844 -184770710 + MER5A DNA MER1_type 20 189 0 495 291 60 39 chr6 4508849 4509031 -184770523 + MIR SINE MIR 18 203 -59 317 299 37 9 chr6 4509158 4509265 -184770289 + MIR SINE MIR 153 262 0 2128 97 10 3 chr6 4509637 4509935 -184769619 + AluSc SINE Alu 1 300 -9 1968 184 91 30 chr6 4510485 4510947 -184768607 - LTR2B LTR ERV1 0 490 1 264 407 42 0 chr6 4510999 4511117 -184768437 - L2 LINE L2 -27 3245 3123 299 231 51 0 chr6 4511168 4511246 -184768308 + MER58B DNA MER1_type 252 333 -8 756 157 100 7 chr6 4511481 4511621 -184767933 - LTR32 LTR ERVL 0 471 319 1972 181 29 14 chr6 4511623 4511972 -184767582 - LTR32 LTR ERVL -103 368 15 1580 190 74 3 chr6 4511972 4512336 -184767218 + L1MB2 LINE L1 5782 6171 0 873 330 14 17 chr6 4512665 4513011 -184766543 + L2 LINE L2 1973 2317 -997 937 283 118 53 chr6 4513028 4513477 -184766077 - MLT1J LTR MaLR -33 478 1 455 333 85 28 chr6 4513477 4513795 -184765759 + L2 LINE L2 2315 2650 -664 398 287 102 56 chr6 4513801 4514058 -184765496 + L2 LINE L2 2473 2717 -555 1922 142 3 0 chr6 4514058 4514361 -184765193 + AluSx SINE Alu 1 304 -8 398 287 102 56 chr6 4514361 4514655 -184764899 + L2 LINE L2 2717 3091 -181 230 250 52 73 chr6 4514802 4514898 -184764656 + L2 LINE L2 3220 3313 0 713 138 7 51 chr6 4516382 4516520 -184763034 - FRAM SINE Alu -4 172 41 548 285 108 25 chr6 4516830 4517107 -184762447 + L1MC4a LINE L1 5569 5868 -1940 875 123 23 0 chr6 4517126 4517256 -184762298 - FLAM_C SINE Alu 0 133 1 1219 202 96 58 chr6 4517335 4518024 -184761530 - L1ME1 LINE L1 -9 6157 5496 2148 123 0 0 chr6 4518024 4518333 -184761221 - AluSg SINE Alu -1 309 1 2034 121 0 25 chr6 4518333 4518648 -184760906 - AluSx SINE Alu -4 308 2 1219 202 96 58 chr6 4518648 4518727 -184760827 - L1ME1 LINE L1 -670 5496 5421 1742 176 0 0 chr6 4518727 4519028 -184760526 - AluSx SINE Alu -11 301 1 1219 202 96 58 chr6 4519028 4519356 -184760198 - L1ME1 LINE L1 -745 5421 4853 844 171 41 59 chr6 4519744 4519864 -184759690 - AluJo SINE Alu -12 300 182 4971 71 3 2 chr6 4519864 4520496 -184759058 - LTR10E LTR ERV1 0 633 1 844 171 41 59 chr6 4520496 4520545 -184759009 - AluJo SINE Alu -130 182 134 852 150 0 0 chr6 4520545 4520678 -184758876 - AluJo SINE Alu -169 133 1 861 246 42 17 chr6 4521473 4521709 -184757845 - MIR SINE MIR -3 259 18 2148 107 0 57 chr6 4521811 4522128 -184757426 - AluSx SINE Alu -13 299 1 265 376 6 25 chr6 4522365 4522527 -184757027 + MIR SINE MIR 75 233 -29 400 263 105 70 chr6 4522618 4522935 -184756619 + L1MC4a LINE L1 4755 5095 -1051 1941 102 45 0 chr6 4522935 4523225 -184756329 + AluSx SINE Alu 7 308 0 400 263 105 70 chr6 4523225 4523362 -184756192 + L1MC4a LINE L1 5095 5226 -920 374 242 89 8 chr6 4523408 4523532 -184756022 - L2 LINE L2 0 3313 3180 1878 132 11 0 chr6 4523716 4523981 -184755573 + AluSx SINE Alu 7 274 -38 21 0 0 0 chr6 4523988 4524009 -184755545 + AT_rich Low_complexity Low_complexity 1 21 0 1496 183 11 21 chr6 4524080 4524364 -184755190 + AluJo SINE Alu 1 281 -31 2603 74 0 0 chr6 4524376 4524687 -184754867 - AluY SINE Alu 0 311 1 936 304 41 39 chr6 4524707 4525147 -184754407 + L1MC4a LINE L1 5466 5906 -1902 503 216 122 0 chr6 4525147 4525295 -184754259 + MER63C DNA MER1_type 1 166 -764 482 224 46 33 chr6 4525396 4525548 -184754006 - MER63C DNA MER1_type -533 397 244 * 1448 188 20 14 chr6 4525432 4525708 -184753846 + MER63C DNA MER1_type 244 521 -409 1068 213 62 0 chr6 4525708 4525919 -184753635 + MER58A DNA MER1_type 1 224 0 1633 230 65 0 chr6 4525919 4526301 -184753253 + MER63C DNA MER1_type 519 925 -5 271 285 98 16 chr6 4527150 4527273 -184752281 - LTR16C LTR ERVL 0 491 359 1060 212 205 40 chr6 4527292 4527716 -184751838 - MLT1G LTR MaLR 0 590 97 1193 178 57 13 chr6 4527808 4528038 -184751516 - MLT1F1 LTR MaLR -299 268 29 204 40 0 0 chr6 4528055 4528080 -184751474 + (TG)n Simple_repeat Simple_repeat 2 26 0 1100 264 190 26 chr6 4528100 4528197 -184751357 - L1ME3A LINE L1 -232 5938 5858 2516 123 21 3 chr6 4528197 4528580 -184750974 - MLT1B LTR MaLR 0 390 1 1100 264 190 26 chr6 4528580 4529064 -184750490 - L1ME3A LINE L1 -312 5858 5265 2247 124 0 0 chr6 4529303 4529602 -184749952 + AluSx SINE Alu 1 299 -13 975 161 37 0 chr6 4530669 4530831 -184748723 - MER20 DNA MER1_type 0 219 52 2538 162 5 0 chr6 4530887 4531288 -184748266 - MER57A LTR ERV1 0 403 1 15608 124 30 3 chr6 4531343 4533693 -184745861 - Tigger1 DNA MER2_type 0 2418 5 347 200 122 0 chr6 4533748 4533838 -184745716 + U13 snRNA snRNA 1 101 -3 1766 88 0 0 chr6 4534428 4534644 -184744910 + AluSg/x SINE Alu 87 302 -8 205 285 49 57 chr6 4535918 4536041 -184743513 + MER5B DNA MER1_type 2 123 -55 180 212 0 0 chr6 4536396 4536429 -184743125 + L2 LINE L2 3230 3262 -10 2406 95 0 0 chr6 4536448 4536744 -184742810 - AluSg SINE Alu -14 296 1 1990 118 0 24 chr6 4536982 4537270 -184742284 + AluSx SINE Alu 22 302 -10 252 232 85 67 chr6 4538391 4538555 -184740999 - L1ME4a LINE L1 -2 6119 5953 524 229 97 0 chr6 4538833 4539008 -184740546 - MIR SINE MIR 0 262 71 538 281 113 30 chr6 4539621 4540027 -184739527 - HAL1 LINE L1 0 2507 2068 * 6821 223 69 24 chr6 4540022 4542650 -184736904 + L1ME1 LINE L1 3153 5901 -265 1693 154 78 7 chr6 4542659 4542965 -184736589 + MER2 DNA MER2_type 17 344 -1 713 247 5 73 chr6 4542969 4543170 -184736384 + L1ME1 LINE L1 5905 6091 -75 941 220 18 23 chr6 4543170 4543388 -184736166 - MER20 DNA MER1_type -1 218 2 713 247 5 73 chr6 4543388 4543405 -184736149 + L1ME1 LINE L1 6091 6108 -58 596 177 21 0 chr6 4543409 4543505 -184736049 + AluJ/FLAM SINE Alu 3 100 -212 39 50 0 0 chr6 4543505 4543565 -184735989 + AT_rich Low_complexity Low_complexity 1 60 0 1712 158 21 7 chr6 4543565 4543849 -184735705 - AluJb SINE Alu -24 288 1 2148 124 3 7 chr6 4543886 4544185 -184735369 + AluSx SINE Alu 1 298 -14 684 293 226 44 chr6 4544383 4545315 -184734239 - HAL1 LINE L1 -931 1576 475 204 125 42 42 chr6 4546501 4546573 -184732981 + (TAA)n Simple_repeat Simple_repeat 1 72 0 1894 261 92 53 chr6 4546623 4546845 -184732709 + L1M4 LINE L1 2210 2422 -3724 2085 121 14 3 chr6 4546845 4547134 -184732420 + AluSx SINE Alu 1 292 -20 1894 261 92 53 chr6 4547134 4548291 -184731263 + L1M4 LINE L1 2422 3643 -2503 1027 236 159 26 chr6 4548313 4549042 -184730512 - L2 LINE L2 -73 3240 2410 234 215 15 15 chr6 4549061 4549126 -184730428 + GA-rich Low_complexity Low_complexity 2 66 0 4295 27 0 0 chr6 4549338 4549827 -184729727 - L1PA4 LINE L1 -4 6151 5663 838 108 58 0 chr6 4549833 4549953 -184729601 - FLAM_C SINE Alu -10 133 7 361 268 49 0 chr6 4550042 4550165 -184729389 - MIR3 SINE MIR -69 139 11 1317 153 77 32 chr6 4551787 4552035 -184727519 + AluJo SINE Alu 39 297 -15 1576 134 0 17 chr6 4552095 4552326 -184727228 + AluJb SINE Alu 17 243 -69 270 81 0 0 chr6 4552337 4552374 -184727180 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1005 163 0 0 chr6 4553854 4554007 -184725547 + FRAM SINE Alu 1 153 -13 671 221 21 106 chr6 4554182 4554513 -184725041 + MLT1J1 LTR MaLR 35 337 -109 294 293 125 66 chr6 4555992 4556416 -184723138 - MLT1K LTR MaLR 0 588 140 2051 141 0 51 chr6 4556979 4557334 -184722220 + MER1B DNA MER1_type 1 337 0 2074 149 74 3 chr6 4557403 4557766 -184721788 + MLT1B LTR MaLR 1 389 -1 209 304 67 38 chr6 4559195 4559307 -184720247 + MIR SINE MIR 7 122 -86 473 232 134 73 chr6 4559357 4559472 -184720082 + MIR SINE MIR 2 109 -153 2422 69 3 7 chr6 4559472 4559778 -184719776 - AluY SINE Alu -6 305 1 473 232 134 73 chr6 4559778 4559908 -184719646 + MIR SINE MIR 109 262 0 260 320 8 25 chr6 4559982 4560104 -184719450 - MLT1K LTR MaLR 0 588 469 198 171 0 0 chr6 4560419 4560460 -184719094 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 225 45 0 chr6 4561051 4561140 -184718414 + MIR SINE MIR 93 185 -77 2025 127 13 30 chr6 4561198 4561497 -184718057 + AluSx SINE Alu 1 294 -18 643 205 66 0 chr6 4561685 4561851 -184717703 - MIR SINE MIR -57 205 29 274 267 12 12 chr6 4563205 4563291 -184716263 + GA-rich Low_complexity Low_complexity 2 87 0 490 286 105 33 chr6 4563761 4564037 -184715517 - LTR16B LTR ERVL 0 464 169 320 266 115 9 chr6 4564837 4564950 -184714604 + MER96 DNA MER1_type? 1 125 -50 206 205 0 0 chr6 4565916 4565955 -184713599 + G-rich Low_complexity Low_complexity 1 39 0 476 263 21 21 chr6 4566014 4566200 -184713354 - MER5A DNA MER1_type -3 186 1 469 299 91 15 chr6 4566431 4566628 -184712926 + MIR SINE MIR 48 259 -3 704 258 154 75 chr6 4566653 4566724 -184712830 - MLT1F1 LTR MaLR 0 590 526 1720 174 7 17 chr6 4566724 4567022 -184712532 + AluJo SINE Alu 6 300 -12 704 258 154 75 chr6 4567022 4567497 -184712057 - MLT1F1 LTR MaLR -64 526 1 1106 138 39 86 chr6 4568114 4568346 -184711208 - AluJo SINE Alu -7 305 85 1826 155 32 45 chr6 4568542 4568922 -184710632 + THE1C LTR MaLR 1 375 0 1028 203 33 5 chr6 4569336 4569548 -184710006 + MER20 DNA MER1_type 1 218 -1 2200 101 0 3 chr6 4570217 4570503 -184709051 - AluSx SINE Alu -27 285 1 453 228 82 78 chr6 4570726 4570932 -184708622 - L1MC5 LINE L1 -74 7887 7681 2199 120 0 0 chr6 4570933 4571232 -184708322 + AluSx SINE Alu 1 299 -13 290 339 51 8 chr6 4572266 4572384 -184707170 + MIR SINE MIR 79 201 -61 * 444 311 179 16 chr6 4572382 4572745 -184706809 - L2 LINE L2 0 3313 2892 2202 125 110 15 chr6 4572776 4573167 -184706387 + MSTA LTR MaLR 1 428 0 1200 319 76 17 chr6 4573263 4573905 -184705649 - L2 LINE L2 -616 2698 2019 675 142 0 0 chr6 4573905 4574025 -184705529 + (GAATG)n Simple_repeat Simple_repeat 3 122 0 424 306 188 3 chr6 4574030 4574366 -184705188 - L2 LINE L2 -1304 2010 1613 301 242 57 16 chr6 4574983 4575107 -184704447 - HAL1b LINE L1 -7 1341 1213 382 164 0 0 chr6 4575504 4575559 -184703995 + AluJ/FLAM SINE Alu 19 73 -229 820 29 29 0 chr6 4575559 4575663 -184703891 - L1PA7 LINE L1 -100 6054 5948 1622 243 102 67 chr6 4575670 4575699 -184703855 + HAL1 LINE L1 114 141 -2366 2195 122 3 0 chr6 4575699 4575993 -184703561 - AluSx SINE Alu -17 295 1 1622 243 102 67 chr6 4575993 4576528 -184703026 + HAL1 LINE L1 141 656 -1851 1590 201 7 13 chr6 4576528 4576827 -184702727 + AluJo SINE Alu 1 297 -15 2241 99 0 43 chr6 4576829 4577153 -184702401 + AluSg SINE Alu 1 310 0 1622 243 102 67 chr6 4577153 4577320 -184702234 + HAL1 LINE L1 656 875 -1632 384 231 93 9 chr6 4577320 4577428 -184702126 + HsTC2 DNA Tc2 1 117 -1781 260 159 45 0 chr6 4577446 4577490 -184702064 + HsTC2 DNA Tc2 1245 1290 -608 1300 239 267 33 chr6 4577515 4578813 -184700741 + HAL1 LINE L1 874 2507 0 383 168 8 143 chr6 4578890 4579009 -184700545 - MER2 DNA MER2_type -1 344 242 1649 128 42 19 chr6 4579011 4579276 -184700278 + AluSx SINE Alu 35 305 -7 291 122 0 0 chr6 4579494 4579535 -184700019 - MSTA LTR MaLR 0 428 388 2296 104 3 0 chr6 4579535 4579834 -184699720 + AluSx SINE Alu 1 300 -12 27 29 0 0 chr6 4580005 4580039 -184699515 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 0 0 chr6 4580973 4581040 -184698514 + (CTTA)n Simple_repeat Simple_repeat 3 69 0 21 0 0 0 chr6 4581352 4581373 -184698181 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 4583727 4583761 -184695793 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 4584843 4584874 -184694680 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr6 4584877 4584915 -184694639 + (TA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr6 4585950 4585972 -184693582 + (A)n Simple_repeat Simple_repeat 1 22 0 2035 139 0 16 chr6 4585992 4586302 -184693252 - AluSx SINE Alu -7 305 1 1844 114 158 24 chr6 4586303 4586644 -184692910 - MSTA LTR MaLR -40 388 2 218 324 88 0 chr6 4586736 4586906 -184692648 + L2 LINE L2 1859 2043 -1271 1979 182 14 0 chr6 4587096 4587453 -184692101 - L1PB4 LINE L1 -1 6155 5794 284 271 42 42 chr6 4587654 4587798 -184691756 + L2 LINE L2 3084 3227 -86 418 297 156 52 chr6 4587884 4588355 -184691199 + HAL1 LINE L1 882 1303 -1204 2236 117 0 0 chr6 4588355 4588653 -184690901 + AluSg SINE Alu 1 298 -12 418 297 156 52 chr6 4588653 4589104 -184690450 + HAL1 LINE L1 1303 1900 -607 479 181 85 11 chr6 4589192 4589286 -184690268 + AluJo SINE Alu 117 217 -95 243 338 68 7 chr6 4589533 4589681 -184689873 + HAL1b LINE L1 749 905 -443 315 324 34 34 chr6 4589778 4589954 -184689600 + HAL1 LINE L1 2226 2401 -106 1933 120 40 36 chr6 4589993 4590159 -184689395 - AluSx SINE Alu -10 302 133 2502 82 0 0 chr6 4590159 4590463 -184689091 - AluY SINE Alu -7 304 1 1933 120 40 36 chr6 4590463 4590597 -184688957 - AluSx SINE Alu -179 133 1 194 318 14 74 chr6 4591091 4591239 -184688315 - MIR SINE MIR -72 190 52 1472 131 25 4 chr6 4591313 4591557 -184687997 + L1MA9 LINE L1 5357 5605 -707 2241 92 3 55 chr6 4591561 4591887 -184687667 + AluSp SINE Alu 1 309 -4 2452 97 0 0 chr6 4591890 4592200 -184687354 + AluSg SINE Alu 1 310 0 1394 118 15 0 chr6 4592204 4592408 -184687146 + L1MA9 LINE L1 5953 6159 -153 * 1597 258 87 68 chr6 4592406 4592701 -184686853 + L1ME3A LINE L1 3586 3874 -2272 2478 77 0 0 chr6 4592701 4592998 -184686556 - AluY SINE Alu -14 297 1 1597 258 87 68 chr6 4592998 4593372 -184686182 + L1ME3A LINE L1 3874 4240 -1906 2542 111 22 8 chr6 4593372 4593742 -184685812 - THE1C LTR MaLR 0 375 1 1597 258 87 68 chr6 4593742 4594077 -184685477 + L1ME3A LINE L1 4240 4621 -1525 2382 100 0 13 chr6 4594077 4594387 -184685167 - AluSq SINE Alu -7 306 1 1597 258 87 68 chr6 4594387 4594620 -184684934 + L1ME3A LINE L1 4621 4848 -1298 508 288 141 13 chr6 4594644 4595236 -184684318 + L1ME3A LINE L1 4928 5579 -591 242 320 30 0 chr6 4595739 4595839 -184683715 + LTR67 LTR ERVL 431 533 -24 906 253 50 44 chr6 4595853 4595937 -184683617 + L1ME3A LINE L1 5581 5663 -507 4904 26 7 0 chr6 4595937 4596504 -184683050 + L1PA4 LINE L1 5585 6155 0 906 253 50 44 chr6 4596504 4596779 -184682775 + L1ME3A LINE L1 5663 5944 -226 365 132 0 13 chr6 4596798 4596874 -184682680 + (TA)n Simple_repeat Simple_repeat 1 75 0 492 257 93 93 chr6 4597178 4597586 -184681968 + L1MC4a LINE L1 5617 6024 -1784 302 188 0 0 chr6 4597590 4597638 -184681916 + MER66B LTR ERV1 298 345 -141 282 281 20 69 chr6 4597685 4597888 -184681666 + L1MC4a LINE L1 6054 6246 -1562 342 0 0 0 chr6 4600114 4600152 -184679402 + (CA)n Simple_repeat Simple_repeat 1 38 0 2118 107 4 0 chr6 4600154 4600424 -184679130 - AluSx SINE Alu -36 276 6 1512 132 107 80 chr6 4600677 4601004 -184678550 - THE1C LTR MaLR 0 375 36 2233 118 0 0 chr6 4601004 4601308 -184678246 + AluSx SINE Alu 1 304 -8 1512 132 107 80 chr6 4601308 4601345 -184678209 - THE1C LTR MaLR -339 36 1 282 366 31 9 chr6 4601509 4601736 -184677818 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4602627 4602921 -184676633 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4603286 4603394 -184676160 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4603394 4603688 -184675866 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4603830 4603943 -184675611 - L1M3 LINE L1 -662 5509 5402 372 262 157 34 chr6 4603911 4604262 -184675292 - L1M4 LINE L1 -3090 3056 2663 * 297 0 0 0 chr6 4604262 4604295 -184675259 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 150 67 0 chr6 4604309 4604576 -184674978 - AluSx SINE Alu -27 285 1 1925 126 48 4 chr6 4604853 4605153 -184674401 + AluSx SINE Alu 1 312 0 2128 126 0 7 chr6 4605318 4605612 -184673942 - AluSg SINE Alu -18 292 1 206 328 76 0 chr6 4605849 4605980 -184673574 + L2 LINE L2 3173 3313 0 2241 122 0 3 chr6 4606055 4606359 -184673195 + AluSq SINE Alu 1 303 -10 470 179 0 9 chr6 4606414 4606520 -184673034 + GA-rich Low_complexity Low_complexity 4 108 0 259 233 222 0 chr6 4606533 4606623 -184672931 + MER5B DNA MER1_type 69 178 0 833 197 77 0 chr6 4606957 4607034 -184672520 + L1MA9 LINE L1 6075 6145 -167 270 0 0 0 chr6 4607034 4607064 -184672490 + (CA)n Simple_repeat Simple_repeat 1 30 0 833 197 77 0 chr6 4607064 4607169 -184672385 + L1MA9 LINE L1 6145 6271 -41 1875 174 7 0 chr6 4607899 4608209 -184671345 + AluJb SINE Alu 1 312 0 1154 176 0 0 chr6 4609025 4609218 -184670336 + AluJb SINE Alu 47 239 -73 2134 146 0 0 chr6 4609703 4610004 -184669550 - AluSx SINE Alu -11 301 1 222 322 46 59 chr6 4610179 4610331 -184669223 - MIR SINE MIR -111 151 2 439 297 104 16 chr6 4610427 4610619 -184668935 + MIR SINE MIR 40 248 -14 2517 37 10 7 chr6 4612083 4612378 -184667176 + AluY SINE Alu 1 296 -15 180 0 0 0 chr6 4612710 4612730 -184666824 + (T)n Simple_repeat Simple_repeat 1 20 0 404 181 0 14 chr6 4613279 4613351 -184666203 + AluJ/FLAM SINE Alu 14 84 -228 1434 180 49 29 chr6 4613544 4613850 -184665704 + AluJo SINE Alu 1 312 0 1703 164 35 0 chr6 4613956 4614242 -184665312 - AluJb SINE Alu -5 307 12 1877 161 27 0 chr6 4614396 4614694 -184664860 - AluSx SINE Alu -6 306 1 363 267 96 84 chr6 4614879 4615029 -184664525 - L1ME4a LINE L1 -222 5899 5752 2041 127 40 3 chr6 4615029 4615329 -184664225 - AluSq SINE Alu -2 311 1 363 267 96 84 chr6 4615329 4615500 -184664054 - L1ME4a LINE L1 -369 5752 5574 380 107 0 0 chr6 4617411 4617467 -184662087 - U6 snRNA snRNA -51 56 1 1869 154 10 3 chr6 4617498 4617797 -184661757 - AluSx SINE Alu -11 301 1 2106 111 27 13 chr6 4617971 4618269 -184661285 - AluSg SINE Alu -8 302 1 673 207 326 4 chr6 4618300 4618527 -184661027 + AluJo SINE Alu 1 300 -2 258 192 39 192 chr6 4618637 4618712 -184660842 - MER81 DNA DNA -4 110 62 1996 155 0 3 chr6 4618712 4619009 -184660545 + AluSx SINE Alu 2 297 -15 258 192 39 192 chr6 4619009 4619063 -184660491 - MER81 DNA DNA -52 62 1 1119 205 114 28 chr6 4619161 4619478 -184660076 - MER2 DNA MER2_type 0 344 1 584 233 93 16 chr6 4619495 4619688 -184659866 - LTR33 LTR ERVL -3 518 311 376 272 95 25 chr6 4619715 4619873 -184659681 - LTR33 LTR ERVL -343 178 10 1736 156 7 41 chr6 4620172 4620467 -184659087 - AluSx SINE Alu -27 285 1 4849 129 37 53 chr6 4620588 4621988 -184657566 - pTR5 LTR ERV1 0 2438 740 1442 153 69 42 chr6 4622247 4622372 -184657182 + AluJo SINE Alu 1 121 -191 2257 95 14 0 chr6 4622372 4622668 -184656886 + AluSg SINE Alu 1 300 -10 832 161 37 31 chr6 4622668 4622830 -184656724 + AluJo/FRAM SINE Alu 134 296 -16 209 266 92 9 chr6 4622955 4623064 -184656490 + MIR SINE MIR 80 197 -65 1998 151 0 0 chr6 4625752 4626043 -184653511 + AluJb SINE Alu 1 291 -21 2444 84 10 0 chr6 4626511 4626820 -184652734 + AluSq SINE Alu 1 312 -1 446 305 25 30 chr6 4627212 4627409 -184652145 - L3 LINE CR1 -520 1057 862 2121 102 0 75 chr6 4627631 4627953 -184651601 + AluSx SINE Alu 1 298 -14 1808 182 0 0 chr6 4628169 4628455 -184651099 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr6 4628455 4628478 -184651076 + AT_rich Low_complexity Low_complexity 1 23 0 1556 173 3 40 chr6 4628490 4628790 -184650764 + AluJo SINE Alu 3 291 -21 2132 114 43 3 chr6 4629957 4630256 -184649298 - AluSx SINE Alu -1 311 1 207 297 0 14 chr6 4630765 4630839 -184648715 + G-rich Low_complexity Low_complexity 2 74 0 705 160 75 64 chr6 4631054 4631121 -184648433 - Charlie4a DNA MER1_type -1465 496 431 2388 82 3 13 chr6 4631121 4631426 -184648128 + AluSp SINE Alu 1 302 -11 705 160 75 64 chr6 4631426 4631545 -184648009 - Charlie4a DNA MER1_type -1530 431 308 1620 199 62 71 chr6 4631548 4631598 -184647956 - L1MA10 LINE L1 -7 6327 6278 2084 125 0 7 chr6 4631598 4631894 -184647660 + AluSq SINE Alu 1 294 -19 1620 199 62 71 chr6 4631894 4632310 -184647244 - L1MA10 LINE L1 -56 6278 5865 1124 189 84 0 chr6 4632310 4632548 -184647006 - Charlie4a DNA MER1_type -192 316 59 1907 83 117 0 chr6 4633487 4633753 -184645801 + AluSx SINE Alu 1 297 -15 1467 94 0 0 chr6 4633755 4633936 -184645618 - AluSc SINE Alu -123 186 6 437 309 96 18 chr6 4633940 4634222 -184645332 + L1MC4a LINE L1 5080 5383 -763 1750 144 0 11 chr6 4634238 4634501 -184645053 + AluSx SINE Alu 29 288 -24 816 311 80 26 chr6 4634524 4634977 -184644577 + L1MC4a LINE L1 5374 5850 -1958 2354 84 3 0 chr6 4634996 4635342 -184644212 + AluSp SINE Alu 1 347 0 2231 110 0 28 chr6 4635352 4635670 -184643884 + AluSq SINE Alu 1 309 -4 2312 89 7 3 chr6 4635788 4636091 -184643463 + AluSp SINE Alu 1 304 -9 1155 162 19 14 chr6 4636417 4636633 -184642921 + MER20 DNA MER1_type 1 217 -2 2310 108 0 0 chr6 4636906 4637203 -184642351 - AluSx SINE Alu -15 297 1 1296 274 84 32 chr6 4637452 4637926 -184641628 - MLT1J LTR MaLR -2 509 11 1707 153 38 51 chr6 4638195 4638509 -184641045 + AluJb SINE Alu 1 310 -2 1830 154 3 10 chr6 4640331 4640623 -184638931 + AluJo SINE Alu 4 293 -19 891 210 113 21 chr6 4640705 4640943 -184638611 - MIR SINE MIR -2 260 1 1796 141 17 23 chr6 4641077 4641376 -184638178 - AluJo SINE Alu -15 297 1 1032 79 14 36 chr6 4641571 4641710 -184637844 + AluSq/x SINE Alu 1 136 -177 233 283 98 39 chr6 4641879 4642084 -184637470 - L2 LINE L2 -213 3059 2843 2217 101 10 0 chr6 4642200 4642496 -184637058 + AluSg SINE Alu 1 299 -11 184 266 83 37 chr6 4642831 4642940 -184636614 - L2 LINE L2 -1034 2280 2167 2236 114 0 0 chr6 4643143 4643440 -184636114 + AluSg SINE Alu 1 297 -13 401 348 51 62 chr6 4643897 4644153 -184635401 + L2 LINE L2 3020 3272 0 409 202 146 0 chr6 4644371 4644460 -184635094 + FLAM_C SINE Alu 2 103 -40 228 35 0 0 chr6 4644773 4644802 -184634752 + (CA)n Simple_repeat Simple_repeat 2 30 0 224 225 75 38 chr6 4645036 4645116 -184634438 - MIR3 SINE MIR -10 198 116 180 176 0 0 chr6 4645339 4645373 -184634181 + L2 LINE L2 3201 3234 -38 1019 69 30 13 chr6 4645398 4645635 -184633919 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 367 232 84 0 chr6 4645923 4646018 -184633536 + MER94 DNA DNA 1 103 -31 825 177 0 0 chr6 4646174 4646298 -184633256 + FLAM_C SINE Alu 2 125 -18 26 0 0 0 chr6 4646301 4646327 -184633227 + AT_rich Low_complexity Low_complexity 1 26 0 814 158 0 0 chr6 4646594 4646721 -184632833 - AluJb SINE Alu -185 127 1 316 355 21 35 chr6 4646849 4646990 -184632564 + MIR3 SINE MIR 32 170 -38 357 24 0 0 chr6 4647860 4647902 -184631652 + (CA)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr6 4648580 4648615 -184630939 + AT_rich Low_complexity Low_complexity 1 35 0 299 301 60 15 chr6 4648637 4648770 -184630784 + MIR SINE MIR 54 192 -70 2217 118 0 0 chr6 4649105 4649409 -184630145 + AluSx SINE Alu 1 304 -8 251 135 0 0 chr6 4649409 4649446 -184630108 - MSTA LTR MaLR -391 37 1 281 337 143 14 chr6 4649466 4649837 -184629717 + L2 LINE L2 1983 2401 -913 1972 112 34 14 chr6 4650728 4651022 -184628532 + AluSx SINE Alu 1 300 -12 346 323 77 7 chr6 4651340 4651495 -184628059 - MIR SINE MIR -57 205 40 2162 88 17 10 chr6 4651495 4651789 -184627765 - AluSc SINE Alu -13 296 1 407 166 12 19 chr6 4651931 4652044 -184627510 - L1M3 LINE L1 -662 5509 5402 248 249 100 39 chr6 4652012 4652310 -184627244 - L1M3 LINE L1 -3090 3056 2719 * 36 0 0 21 chr6 4652458 4652490 -184627064 + AT_rich Low_complexity Low_complexity 1 33 -13 2226 95 3 0 chr6 4652490 4652775 -184626779 - AluSx SINE Alu -26 286 1 36 0 0 21 chr6 4652775 4652789 -184626765 + AT_rich Low_complexity Low_complexity 33 46 0 729 195 0 0 chr6 4652789 4652907 -184626647 + FRAM SINE Alu 1 113 -63 2657 51 0 10 chr6 4653114 4653428 -184626126 - AluY SINE Alu 0 311 1 621 245 155 0 chr6 4653527 4653682 -184625872 + MER5A DNA MER1_type 11 189 0 189 0 0 0 chr6 4655110 4655131 -184624423 + (TG)n Simple_repeat Simple_repeat 2 22 0 426 94 0 0 chr6 4655133 4655197 -184624357 + (TAGG)n Simple_repeat Simple_repeat 4 67 0 1633 178 25 0 chr6 4655198 4655484 -184624070 - AluJb SINE Alu -19 293 1 906 119 0 30 chr6 4656290 4656424 -184623130 + FRAM SINE Alu 29 158 -18 180 0 0 0 chr6 4657298 4657318 -184622236 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2222 100 0 34 chr6 4657323 4657644 -184621910 - AluSq SINE Alu -3 310 1 299 301 60 15 chr6 4657979 4658112 -184621442 - MIR SINE MIR -70 192 54 28 29 0 0 chr6 4658134 4658169 -184621385 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr6 4658847 4658889 -184620665 + (TG)n Simple_repeat Simple_repeat 2 43 0 316 355 21 35 chr6 4659759 4659900 -184619654 - MIR3 SINE MIR -38 170 32 814 158 0 0 chr6 4660028 4660155 -184619399 + AluJb SINE Alu 1 127 -185 2029 136 3 3 chr6 4660331 4660617 -184618937 + AluSx SINE Alu 1 286 -26 186 71 0 0 chr6 4660617 4660645 -184618909 + (TA)n Simple_repeat Simple_repeat 2 29 0 1993 121 7 10 chr6 4660653 4660943 -184618611 + AluSx SINE Alu 1 289 -23 28 61 0 0 chr6 4661115 4661164 -184618390 + AT_rich Low_complexity Low_complexity 1 49 0 2513 64 0 6 chr6 4661231 4661542 -184618012 - AluY SINE Alu -2 309 1 292 292 36 18 chr6 4661626 4661794 -184617760 - L1ME4a LINE L1 -226 5895 5725 2424 82 10 0 chr6 4661877 4662249 -184617305 + AluSq SINE Alu 5 379 0 2239 103 0 0 chr6 4663623 4663915 -184615639 - AluSg SINE Alu -18 292 1 243 254 111 0 chr6 4664042 4664105 -184615449 + MIR SINE MIR 123 192 -70 2235 284 120 40 chr6 4664524 4665934 -184613620 + L1MEd LINE L1 543 1838 -4291 2109 136 0 13 chr6 4665934 4666236 -184613318 + AluSx SINE Alu 1 298 -14 2235 284 120 40 chr6 4666236 4666552 -184613002 + L1MEd LINE L1 1838 2127 -4002 2264 123 0 0 chr6 4666552 4666861 -184612693 - AluSg SINE Alu -1 309 1 2235 284 120 40 chr6 4666861 4667314 -184612240 + L1MEd LINE L1 2127 2542 -3587 2053 131 7 7 chr6 4667314 4667619 -184611935 + AluSx SINE Alu 1 305 -7 2235 284 120 40 chr6 4667619 4667828 -184611726 + L1MEd LINE L1 2542 2733 -3396 2179 131 0 0 chr6 4667828 4668134 -184611420 - AluSx SINE Alu -3 309 4 2235 284 120 40 chr6 4668134 4668473 -184611081 + L1MEd LINE L1 2733 3043 -3086 2319 106 0 3 chr6 4668473 4668784 -184610770 - AluSq SINE Alu -3 310 1 2235 284 120 40 chr6 4668784 4668996 -184610558 + L1MEd LINE L1 3043 3237 -2892 1701 164 20 16 chr6 4668996 4669301 -184610253 + AluJb SINE Alu 1 306 -6 2235 284 120 40 chr6 4669301 4669538 -184610016 + L1MEd LINE L1 3237 3938 -2191 2042 122 0 0 chr6 4669566 4669844 -184609710 + AluSg SINE Alu 1 278 -32 267 140 0 0 chr6 4669846 4669896 -184609658 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 369 258 157 13 chr6 4669896 4670055 -184609499 + L1MEd LINE L1 3947 4128 -2001 188 346 99 16 chr6 4670303 4670485 -184609069 + L2 LINE L2 2825 3021 -251 4236 143 110 99 chr6 4670523 4670928 -184608626 + L1MC3 LINE L1 6133 5748 -585 231 276 46 0 chr6 4670928 4671015 -184608539 + MLT1F1 LTR MaLR 35 125 -442 4236 143 110 99 chr6 4671015 4671609 -184607945 + L1MC3 LINE L1 5747 6333 0 2307 70 17 7 chr6 4672065 4672239 -184607315 - AluY SINE Alu -7 304 124 405 0 0 0 chr6 4672239 4672284 -184607270 + (TG)n Simple_repeat Simple_repeat 2 46 0 2307 70 17 7 chr6 4672284 4672410 -184607144 - AluY SINE Alu -187 124 1 342 313 157 0 chr6 4672436 4672551 -184607003 + L2 LINE L2 3134 3266 -6 323 197 0 0 chr6 4672734 4672795 -184606759 + MIR SINE MIR 181 241 -21 21 0 0 0 chr6 4672806 4672827 -184606727 + AT_rich Low_complexity Low_complexity 1 21 0 316 163 75 25 chr6 4673148 4673228 -184606326 + MER112 DNA MER1_type 1 84 -176 412 186 0 93 chr6 4673347 4673388 -184606166 - MER5A DNA MER1_type -81 108 65 2092 117 0 23 chr6 4673388 4673687 -184605867 - AluSx SINE Alu -20 292 1 412 186 0 93 chr6 4673687 4673763 -184605791 - MER5A DNA MER1_type -124 65 2 189 74 0 0 chr6 4673979 4674006 -184605548 + (TC)n Simple_repeat Simple_repeat 2 28 0 29 110 0 0 chr6 4677891 4678018 -184601536 + GC_rich Low_complexity Low_complexity 1 127 0 272 229 9 46 chr6 4678417 4678526 -184601028 + C-rich Low_complexity Low_complexity 3 107 0 188 33 0 33 chr6 4678553 4678583 -184600971 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 209 143 20 20 chr6 4678731 4678780 -184600774 + (CCCCG)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr6 4678872 4678894 -184600660 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 4678993 4679021 -184600533 + GC_rich Low_complexity Low_complexity 1 28 0 271 124 41 52 chr6 4679107 4679204 -184600350 + (CCCG)n Simple_repeat Simple_repeat 4 99 0 190 292 117 25 chr6 4680266 4680386 -184599168 - L2 LINE L2 -1 3312 3182 441 257 189 22 chr6 4681107 4681329 -184598225 + MIR SINE MIR 3 261 -1 189 310 0 52 chr6 4681732 4681790 -184597764 + L2 LINE L2 3203 3257 -15 1109 225 64 35 chr6 4682028 4682339 -184597215 - MER58B DNA MER1_type -21 320 1 1495 144 9 115 chr6 4682494 4682842 -184596712 - AluYa5 SINE Alu 0 311 1 467 309 34 73 chr6 4685441 4685691 -184593863 - L1MEc LINE L1 -4641 1669 1438 2110 133 0 7 chr6 4685691 4685992 -184593562 - AluSq SINE Alu -14 299 1 467 309 34 73 chr6 4685992 4686123 -184593431 - L1MEc LINE L1 -4872 1438 1303 490 246 126 62 chr6 4686149 4686458 -184593096 - L1MEc LINE L1 -4883 1236 908 1932 144 73 12 chr6 4686896 4686998 -184592556 + MER7A DNA MER2_type 2 96 -2942 2513 112 20 0 chr6 4686998 4687355 -184592199 + THE1B LTR MaLR 1 364 0 1932 144 73 12 chr6 4687355 4687579 -184591975 + MER7A DNA MER2_type 96 346 0 2258 114 3 0 chr6 4690039 4690345 -184589209 - AluSx SINE Alu -5 307 1 1939 129 34 3 chr6 4690481 4690776 -184588778 + AluSx SINE Alu 1 304 -8 1790 170 7 0 chr6 4691347 4691647 -184587907 - AluJb SINE Alu -10 302 1 375 293 61 45 chr6 4693637 4693835 -184585719 + MARNA DNA Mariner 275 475 -111 2511 55 0 32 chr6 4694157 4694465 -184585089 - AluY SINE Alu -13 298 1 490 250 141 68 chr6 4694518 4694707 -184584847 - L1ME LINE L1 -840 5240 5066 2191 109 3 17 chr6 4694707 4695009 -184584545 - AluSx SINE Alu -14 298 1 490 250 141 68 chr6 4695009 4695512 -184584042 - L1ME LINE L1 -1014 5066 4497 205 262 0 83 chr6 4695512 4695596 -184583958 - L2 LINE L2 -59 3254 3178 2143 244 140 48 chr6 4695713 4696932 -184582622 - L2 LINE L2 -421 2893 1563 554 279 148 41 chr6 4697097 4697638 -184581916 - L1ME LINE L1 -1801 4279 3681 1794 104 100 19 chr6 4698236 4698506 -184581048 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 4698639 4698661 -184580893 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 4699681 4699708 -184579846 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2366 194 55 30 chr6 4699708 4700233 -184579321 - L1MB7 LINE L1 -16 6168 5631 1869 197 0 0 chr6 4700237 4700546 -184579008 - AluJb SINE Alu -3 309 1 2315 264 131 37 chr6 4700876 4701717 -184577837 - L1ME LINE L1 -2406 3674 2913 1609 176 51 14 chr6 4701717 4702012 -184577542 - AluJb SINE Alu -6 306 1 2315 264 131 37 chr6 4702012 4704051 -184575503 - L1ME LINE L1 -3167 2913 278 1795 171 3 7 chr6 4704534 4704826 -184574728 + AluJo SINE Alu 6 296 -16 180 0 0 0 chr6 4706007 4706027 -184573527 + (T)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr6 4706189 4706226 -184573328 + AT_rich Low_complexity Low_complexity 1 37 0 2582 162 24 31 chr6 4707714 4708225 -184571329 - MLT2B1 LTR ERVL -8 512 6 4203 221 91 51 chr6 4708708 4709111 -184570443 - L1MC4a LINE L1 0 7808 7422 1438 218 17 57 chr6 4709111 4709514 -184570040 - MLT1B LTR MaLR 0 390 4 4203 221 91 51 chr6 4709514 4709865 -184569689 - L1MC4a LINE L1 -386 7422 7086 2072 137 0 9 chr6 4709865 4710180 -184569374 - AluJo SINE Alu 0 312 1 4203 221 91 51 chr6 4710180 4710811 -184568743 - L1MC4a LINE L1 -722 7086 6367 565 245 0 2 chr6 4710812 4710997 -184568557 + MER58A DNA MER1_type 6 223 -1 2555 218 53 30 chr6 4711005 4711740 -184567814 - L1MC4a LINE L1 -1434 6374 5623 1480 176 76 53 chr6 4712867 4713224 -184566330 - MLT1A1 LTR MaLR 0 365 1 241 163 23 0 chr6 4713322 4713365 -184566189 + MER69 DNA AcHobo 1 44 -1182 901 168 37 102 chr6 4713879 4714123 -184565431 - AluJo SINE Alu -8 304 77 326 227 31 41 chr6 4714249 4714346 -184565208 + MER5A DNA MER1_type 14 109 -80 342 260 127 48 chr6 4714466 4714786 -184564768 - L1MC4a LINE L1 -494 5627 5538 * 500 264 88 89 chr6 4714783 4715735 -184563819 - L1MC4a LINE L1 -1331 4815 3865 1679 177 16 35 chr6 4716035 4716352 -184563202 - AluJb SINE Alu -1 311 1 1893 152 10 7 chr6 4716793 4717096 -184562458 - AluSx SINE Alu -8 304 1 201 175 0 0 chr6 4717480 4717520 -184562034 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 321 310 147 11 chr6 4717747 4717931 -184561623 - L1MC4a LINE L1 -485 5636 5428 222 91 0 0 chr6 4717947 4717980 -184561574 + (T)n Simple_repeat Simple_repeat 1 33 0 1868 155 36 7 chr6 4718759 4719062 -184560492 - AluSx SINE Alu 0 312 1 1842 160 7 0 chr6 4720248 4720562 -184558992 + AluJb SINE Alu 1 316 0 423 0 0 0 chr6 4721390 4721437 -184558117 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr6 4721436 4721457 -184558097 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 954 169 13 65 chr6 4721962 4722193 -184557361 + MER20 DNA MER1_type 1 219 0 1054 56 0 42 chr6 4723534 4723676 -184555878 - AluSg/x SINE Alu -1 309 174 2058 130 3 10 chr6 4723725 4724025 -184555529 + AluSx SINE Alu 1 298 -14 1669 154 6 91 chr6 4724241 4724571 -184554983 - AluJb SINE Alu -9 303 2 372 211 158 0 chr6 4725872 4726005 -184553549 - L1MB4 LINE L1 -12 6168 6015 * 3469 183 64 33 chr6 4725999 4727048 -184552506 - L1MB4 LINE L1 -11 6667 5590 360 202 48 10 chr6 4727043 4727147 -184552407 - L1MB4 LINE L1 -1433 5211 5104 * 2232 116 0 0 chr6 4727148 4727440 -184552114 - AluSx SINE Alu -16 296 5 1153 208 224 32 chr6 4727500 4728001 -184551553 - L1MB4 LINE L1 -1800 4844 4248 666 248 57 52 chr6 4728005 4728215 -184551339 - MER82 DNA MER2_type 0 653 443 383 303 6 46 chr6 4728261 4728394 -184551160 + MIR SINE MIR 31 164 -44 3176 213 118 72 chr6 4728490 4729932 -184549622 - L1MB4 LINE L1 -2849 3795 2421 2209 118 3 0 chr6 4729932 4730228 -184549326 - AluSx SINE Alu -15 297 1 3176 213 118 72 chr6 4730228 4730526 -184549028 - L1MB4 LINE L1 -4223 2421 2138 1200 100 6 18 chr6 4730526 4730696 -184548858 - FRAM SINE Alu -9 167 1 3176 213 118 72 chr6 4730696 4731674 -184547880 - L1MB4 LINE L1 -4506 2138 776 183 80 0 0 chr6 4731674 4731699 -184547855 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3176 213 118 72 chr6 4731699 4731874 -184547680 - L1MB4 LINE L1 -5868 776 611 266 280 77 33 chr6 4732174 4732356 -184547198 - L1MB4 LINE L1 -6335 207 18 4862 21 0 9 chr6 4732872 4733446 -184546108 - L1PA3 LINE L1 -1 6154 5586 39892 37 2 2 chr6 4733449 4738504 -184541050 - L1PA3 LINE L1 -1090 5056 2 352 266 79 50 chr6 4739222 4739361 -184540193 + L2 LINE L2 3128 3270 -2 22 35 0 0 chr6 4739628 4739657 -184539897 + AT_rich Low_complexity Low_complexity 1 29 0 2318 89 0 19 chr6 4739722 4740038 -184539516 - AluSg SINE Alu 0 310 1 1627 201 0 13 chr6 4740043 4740351 -184539203 - AluJb SINE Alu -8 304 1 10689 178 30 5 chr6 4740433 4740967 -184538587 - L1PB1 LINE L1 0 6867 6348 2087 92 36 0 chr6 4740967 4741248 -184538306 - AluSg SINE Alu -19 291 1 10689 178 30 5 chr6 4741248 4743113 -184536441 - L1PB1 LINE L1 -519 6348 4350 205 49 0 49 chr6 4743113 4743154 -184536400 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 10689 178 30 5 chr6 4743154 4744230 -184535324 - L1PB1 LINE L1 -2517 4350 3303 51 0 0 0 chr6 4744230 4744281 -184535273 + AT_rich Low_complexity Low_complexity 1 51 0 276 99 64 41 chr6 4744281 4744453 -184535101 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 271 173 13 13 chr6 4744456 4744531 -184535023 + (TAA)n Simple_repeat Simple_repeat 1 75 0 8231 119 60 37 chr6 4744538 4746490 -184533064 - L1PB1 LINE L1 -3493 3369 1389 521 79 8 0 chr6 4746533 4746658 -184532896 - L1PB1 LINE L1 -5700 1163 995 1051 149 0 5 chr6 4746658 4746853 -184532701 - L1PB1 LINE L1 -6669 194 1 768 218 94 24 chr6 4746953 4747523 -184532031 + MER114 LTR ERV 1 648 0 180 0 0 0 chr6 4747565 4747585 -184531969 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1505 212 36 3 chr6 4747824 4748154 -184531400 - MER58B DNA MER1_type 0 341 1 297 232 0 0 chr6 4749088 4749144 -184530410 + MER94 DNA DNA 79 134 0 299 239 83 46 chr6 4749393 4749502 -184530052 - MER5A DNA MER1_type 0 189 77 185 333 31 23 chr6 4750416 4750545 -184529009 + L2 LINE L2 3183 3312 -1 364 254 132 54 chr6 4752009 4752214 -184527340 - L2 LINE L2 -18 3295 3075 227 194 78 108 chr6 4752229 4752358 -184527196 + MIR SINE MIR 57 133 -75 211 324 15 15 chr6 4752480 4752548 -184527006 - L2 LINE L2 -4 3268 3201 380 188 247 39 chr6 4753435 4753589 -184525965 + MIR SINE MIR 48 233 -29 304 345 39 0 chr6 4754310 4754542 -184525012 - L1MC4 LINE L1 -701 7341 7101 1050 89 16 0 chr6 4754589 4754897 -184524657 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 330 295 20 13 chr6 4755015 4755069 -184524485 - L1MC4 LINE L1 -1037 7005 6953 1721 171 34 0 chr6 4755069 4755362 -184524192 - AluJo SINE Alu -9 303 1 330 295 20 13 chr6 4755362 4755456 -184524098 - L1MC4 LINE L1 -1089 6953 6856 556 276 45 78 chr6 4755486 4755729 -184523825 - MIR SINE MIR -15 247 13 246 156 0 0 chr6 4755744 4755789 -184523765 + CT-rich Low_complexity Low_complexity 6 50 0 948 142 11 80 chr6 4757560 4757736 -184521818 - AluJo SINE Alu -22 290 127 252 156 0 0 chr6 4758063 4758108 -184521446 + MER112 DNA MER1_type 205 249 -11 631 262 112 65 chr6 4758362 4758747 -184520807 - L2 LINE L2 -28 3285 2883 366 263 244 25 chr6 4758793 4759109 -184520445 - L2 LINE L2 -645 2669 2285 641 136 40 0 chr6 4759409 4759534 -184520020 - L1MB3 LINE L1 -1 6182 6053 224 317 59 54 chr6 4760655 4760876 -184518678 - MIR SINE MIR -33 229 8 728 226 74 43 chr6 4760986 4761216 -184518338 + MIR SINE MIR 16 252 -10 2582 64 0 0 chr6 4762163 4762474 -184517080 - AluY SINE Alu 0 311 1 295 80 0 20 chr6 4762735 4762785 -184516769 - MLT2A1 LTR ERVL -8 445 397 271 79 89 20 chr6 4762787 4762888 -184516666 + (TA)n Simple_repeat Simple_repeat 2 109 0 2397 101 40 18 chr6 4762919 4763314 -184516240 - MLT2A1 LTR ERVL -40 404 1 3106 170 5 4 chr6 4765069 4765628 -184513926 + L1PA16 LINE L1 5587 6146 -20 521 319 128 24 chr6 4766189 4766590 -184512964 + L1MCa LINE L1 1376 2051 -736 2511 107 6 8 chr6 4766780 4767136 -184512418 + THE1A LTR MaLR 1 355 0 2643 127 8 106 chr6 4767224 4767816 -184511738 + LTR10A LTR ERV1 12 545 -64 309 279 211 19 chr6 4768129 4768441 -184511113 + L1MCa LINE L1 2831 3202 -3224 402 274 135 61 chr6 4768546 4768769 -184510785 + L1MCa LINE L1 3406 3611 -2815 1131 168 25 0 chr6 4768769 4768972 -184510582 + MER6B DNA MER2_type 2 209 -1 402 274 135 61 chr6 4768972 4769207 -184510347 + L1MCa LINE L1 3611 3898 -2528 1603 245 98 14 chr6 4769485 4770037 -184509517 - L1M4 LINE L1 -1856 4788 4191 2532 244 72 73 chr6 4770080 4771362 -184508192 - L1M4 LINE L1 -2692 3952 2700 2248 124 0 0 chr6 4771362 4771669 -184507885 - AluSx SINE Alu -5 307 1 2532 244 72 73 chr6 4771669 4772314 -184507240 - L1M4 LINE L1 -3944 2700 2056 937 188 0 0 chr6 4772345 4772494 -184507060 - FRAM SINE Alu -19 157 9 1100 257 109 35 chr6 4772522 4773318 -184506236 - L1M4 LINE L1 -4732 1914 1076 391 167 0 0 chr6 4773645 4773711 -184505843 - Tigger4(Zombi) DNA MER2_type -2665 66 1 2043 121 13 3 chr6 4774655 4774953 -184504601 - AluSq SINE Alu -12 301 1 2037 255 98 5 chr6 4776850 4777496 -184502058 - L1ME2 LINE L1 -4 6160 5455 940 246 100 36 chr6 4777468 4777967 -184501587 - L1ME2 LINE L1 -1381 4765 4235 * 1534 204 79 78 chr6 4778236 4778991 -184500563 - L1ME2 LINE L1 -15 6218 5359 384 131 0 0 chr6 4779019 4779080 -184500474 + MLT1A1-int LTR MaLR 1662 1722 -13 1759 207 64 0 chr6 4779113 4779456 -184500098 + MLT1A1 LTR MaLR 1 365 0 1315 272 61 43 chr6 4779580 4780283 -184499271 - L1ME2 LINE L1 -968 5247 4532 * 2539 237 136 56 chr6 4780277 4781731 -184497823 - L1ME2 LINE L1 -2228 3987 2418 2437 91 0 3 chr6 4781826 4782133 -184497421 - AluSq SINE Alu -7 306 1 5413 160 62 20 chr6 4782139 4783263 -184496291 - L1MC1 LINE L1 -2 6331 5172 561 265 48 59 chr6 4783254 4783612 -184495942 - L1ME2 LINE L1 -3826 2389 2076 * 401 312 51 22 chr6 4783673 4783811 -184495743 + MER5A DNA MER1_type 33 174 -15 488 221 129 42 chr6 4783817 4784057 -184495497 - L1ME2 LINE L1 -4387 2009 1749 1090 264 123 21 chr6 4784113 4784495 -184495059 + LTR40b LTR ERVL 1 421 -41 940 288 123 83 chr6 4784512 4785284 -184494270 + HERVL40 LTR ERVL 43 845 -4685 258 250 14 0 chr6 4785330 4785402 -184494152 + HERVL40 LTR ERVL 2041 2113 -924 252 246 18 0 chr6 4785517 4785574 -184493980 + HERVL40 LTR ERVL 2214 2271 -766 309 197 0 0 chr6 4786497 4786558 -184492996 + HERVL40 LTR ERVL 2830 2890 -147 * 960 253 42 0 chr6 4786547 4786788 -184492766 + HERVL40 LTR ERVL 5278 5528 -2 925 267 105 24 chr6 4786790 4787161 -184492393 + LTR40a LTR ERVL 1 401 -118 1296 222 4 33 chr6 4787163 4787271 -184492283 + Tigger7 DNA MER2_type 1 111 -2376 1938 166 0 0 chr6 4787271 4787567 -184491987 - AluJo SINE Alu -16 296 1 1296 222 4 33 chr6 4787567 4787733 -184491821 + Tigger7 DNA MER2_type 111 267 -2220 429 216 0 0 chr6 4787734 4787822 -184491732 + Tigger7 DNA MER2_type 2400 2487 -4 502 139 37 56 chr6 4787833 4787941 -184491613 + LTR40a LTR ERVL 410 515 -4 8183 211 81 25 chr6 4788009 4791343 -184488211 - L1MB8 LINE L1 0 6178 2658 815 213 54 76 chr6 4791478 4791496 -184488058 + MER58B DNA MER1_type 71 88 -2332 2408 73 3 3 chr6 4791496 4791796 -184487758 - AluSg SINE Alu -10 300 1 815 213 54 76 chr6 4791796 4792054 -184487500 + MER58B DNA MER1_type 88 341 0 2305 97 0 0 chr6 4795684 4795984 -184483570 + AluSx SINE Alu 1 300 -12 210 282 118 0 chr6 4796377 4796462 -184483092 - MIR3 SINE MIR -8 200 106 673 256 36 15 chr6 4796630 4796825 -184482729 + MER58 DNA MER1_type 2 200 -2220 1165 105 7 0 chr6 4796870 4797022 -184482532 - AluSq SINE Alu -160 153 1 228 67 0 0 chr6 4797108 4797138 -184482416 + (TG)n Simple_repeat Simple_repeat 2 31 0 241 326 0 0 chr6 4797157 4797246 -184482308 + L1MC4 LINE L1 6615 6703 -1339 252 235 0 0 chr6 4797246 4797314 -184482240 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 249 299 23 0 chr6 4797315 4797402 -184482152 + L1MC4 LINE L1 6615 6703 -1339 245 299 23 0 chr6 4797338 4797425 -184482129 - L1MC4 LINE L1 -1339 6703 6615 * 204 217 0 0 chr6 4797428 4797474 -184482080 + (TA)n Simple_repeat Simple_repeat 2 47 0 269 299 86 8 chr6 4797995 4798112 -184481442 + L2 LINE L2 3186 3311 -2 827 152 0 8 chr6 4799298 4799423 -184480131 + FLAM_C SINE Alu 1 124 -19 1851 83 8 12 chr6 4799481 4799735 -184479819 + AluY SINE Alu 43 295 -16 969 159 6 29 chr6 4799736 4799906 -184479648 + AluJo/FRAM SINE Alu 138 303 -9 1126 258 54 81 chr6 4800890 4801444 -184478110 - MER34 LTR ERV1 -3 539 1 482 179 36 27 chr6 4801963 4802075 -184477479 - L1MC4 LINE L1 -2 8040 7928 218 205 0 0 chr6 4802094 4802133 -184477421 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 465 66 0 0 chr6 4802433 4802494 -184477060 + (TA)n Simple_repeat Simple_repeat 2 62 0 262 250 62 0 chr6 4802528 4802592 -184476962 - U6 snRNA snRNA -1 106 39 263 254 112 52 chr6 4803201 4803335 -184476219 - MIR3 SINE MIR -62 146 5 336 287 143 56 chr6 4803380 4803666 -184475888 - MLT1K LTR MaLR -1 587 277 2218 92 10 26 chr6 4803780 4804085 -184475469 + AluSp SINE Alu 1 300 -13 431 196 27 9 chr6 4807445 4807557 -184471997 - L1MA4A LINE L1 -1 6302 6189 1493 161 19 74 chr6 4809013 4809337 -184470217 - AluJb SINE Alu -6 306 1 304 352 102 51 chr6 4811112 4811234 -184468320 + L2 LINE L2 2653 2767 -505 2117 102 3 16 chr6 4811234 4811537 -184468017 - AluY SINE Alu -12 299 1 304 352 102 51 chr6 4811537 4811962 -184467592 + L2 LINE L2 2767 3263 -9 2268 55 41 17 chr6 4812497 4812790 -184466764 - AluY SINE Alu -11 300 1 23 86 0 0 chr6 4813329 4813387 -184466167 + AT_rich Low_complexity Low_complexity 1 58 0 700 241 76 101 chr6 4813434 4813908 -184465646 - LTR37B LTR ERV1 -2 466 5 226 278 118 66 chr6 4814156 4814262 -184465292 - L2 LINE L2 -506 2808 2709 1942 153 138 31 chr6 4814262 4814647 -184464907 - MSTC LTR MaLR -2 426 1 226 278 118 66 chr6 4814647 4814752 -184464802 - L2 LINE L2 -605 2709 2586 28 0 0 0 chr6 4814918 4814946 -184464608 + AT_rich Low_complexity Low_complexity 1 28 0 1009 211 57 0 chr6 4815353 4815562 -184463992 - MER58A DNA MER1_type -1 223 3 326 192 111 134 chr6 4815638 4815810 -184463744 - L1MCc LINE L1 -5396 1027 860 362 335 78 9 chr6 4816064 4816294 -184463260 - L1MCc LINE L1 -6091 332 87 5411 136 22 23 chr6 4817046 4817919 -184461635 + MER4D LTR ERV1 1 872 0 1095 154 104 36 chr6 4821070 4821290 -184458264 - MER46A DNA MER2_type 0 236 2 2086 211 112 6 chr6 4821476 4822011 -184457543 + L1MB4 LINE L1 5589 6180 0 1958 132 11 0 chr6 4822300 4822581 -184456973 - AluSx SINE Alu -28 284 1 213 39 0 0 chr6 4822661 4822687 -184456867 + (TG)n Simple_repeat Simple_repeat 1 26 0 221 204 0 0 chr6 4823481 4823525 -184456029 - L2 LINE L2 -7 3306 3263 4256 135 67 21 chr6 4824624 4825371 -184454183 - L1MA5 LINE L1 -3 6297 5517 1821 35 0 31 chr6 4825371 4825597 -184453957 + AluY SINE Alu 92 310 -1 210 281 18 0 chr6 4825617 4825674 -184453880 + MER5B DNA MER1_type 121 178 0 2263 50 10 17 chr6 4827065 4827362 -184452192 - AluY SINE Alu 0 311 17 377 242 144 70 chr6 4828668 4828953 -184450601 - L1ME4a LINE L1 -270 5920 5615 291 54 0 0 chr6 4829089 4829126 -184450428 + (TG)n Simple_repeat Simple_repeat 2 38 0 1569 118 126 16 chr6 4829127 4829381 -184450173 - AluSx SINE Alu -26 286 5 328 228 167 83 chr6 4829772 4829918 -184449636 - L1ME4a LINE L1 -1487 4728 4596 195 42 0 0 chr6 4829918 4829942 -184449612 + (TG)n Simple_repeat Simple_repeat 1 24 0 328 228 167 83 chr6 4829942 4830119 -184449435 - L1ME4a LINE L1 -1619 4596 4378 753 278 80 36 chr6 4830665 4831159 -184448395 - L1ME4a LINE L1 -4559 1658 1112 354 45 0 0 chr6 4831159 4831203 -184448351 + (CA)n Simple_repeat Simple_repeat 2 45 0 753 278 80 36 chr6 4831203 4831320 -184448234 - L1ME4a LINE L1 -5105 1112 1002 1417 287 69 47 chr6 4831364 4832315 -184447239 - L1ME4a LINE L1 -5381 1015 44 245 292 191 0 chr6 4832730 4832819 -184446735 + MIR3 SINE MIR 75 180 -28 631 314 98 25 chr6 4832823 4833180 -184446374 - L2 LINE L2 -20 3293 2911 1586 198 25 38 chr6 4833819 4834187 -184445367 - MLT1A1 LTR MaLR -2 363 1 339 278 101 65 chr6 4835472 4835720 -184443834 + L1MC4a LINE L1 5676 5932 -1876 26 30 0 0 chr6 4835983 4836016 -184443538 + AT_rich Low_complexity Low_complexity 1 33 0 191 372 26 0 chr6 4838178 4838256 -184441298 - MIR SINE MIR -122 140 61 863 128 0 0 chr6 4838803 4838928 -184440626 + FLAM_C SINE Alu 1 125 -18 1476 194 3 7 chr6 4838940 4839234 -184440320 + AluJo SINE Alu 1 293 -19 186 156 0 0 chr6 4839937 4839982 -184439572 + T-rich Low_complexity Low_complexity 1 45 0 1365 105 35 18 chr6 4840179 4840408 -184439146 - L1MA8 LINE L1 -5 6286 6054 22 0 0 0 chr6 4845995 4846017 -184433537 + AT_rich Low_complexity Low_complexity 1 22 0 435 223 116 0 chr6 4846498 4846619 -184432935 - LTR16A LTR ERVL 0 450 316 289 280 80 13 chr6 4846662 4846812 -184432742 - LTR16A LTR ERVL -290 160 1 1539 240 109 46 chr6 4846907 4847556 -184431998 + L1MC4a LINE L1 7106 7802 -6 297 308 25 25 chr6 4848257 4848377 -184431177 - HERV16 LTR ERVL -1450 4314 4195 462 281 62 0 chr6 4849118 4849328 -184430226 - HERV16 LTR ERVL -3880 1116 894 227 139 23 0 chr6 4849973 4850016 -184429538 - LTR16A LTR ERVL -83 367 324 361 176 63 142 chr6 4850773 4850978 -184428576 + MER20 DNA MER1_type 31 219 0 2187 47 0 14 chr6 4852900 4853179 -184426375 + AluY SINE Alu 25 299 -12 1895 114 0 4 chr6 4855002 4855283 -184424271 - AluSc SINE Alu -16 293 14 773 98 98 24 chr6 4855290 4855413 -184424141 - AluSq/x SINE Alu -180 133 2 2058 110 0 0 chr6 4856054 4856346 -184423208 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 4856350 4856372 -184423182 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 4857963 4857991 -184421563 + AT_rich Low_complexity Low_complexity 1 28 0 260 259 126 44 chr6 4858820 4858955 -184420599 - MIR SINE MIR -41 221 76 499 261 113 53 chr6 4859237 4859555 -184419999 + L1ME4a LINE L1 5490 5826 -295 25 65 0 0 chr6 4860398 4860444 -184419110 + AT_rich Low_complexity Low_complexity 1 46 0 369 228 55 39 chr6 4860899 4861026 -184418528 - MIR3 SINE MIR -66 142 14 3782 237 64 19 chr6 4861679 4862858 -184416696 + L1M4 LINE L1 2570 3800 -2346 539 176 0 0 chr6 4862858 4862949 -184416605 + AluJ/FRAM SINE Alu 217 307 -5 3089 160 52 86 chr6 4862949 4863750 -184415804 + L1MB7 LINE L1 5392 6165 -19 406 287 63 33 chr6 4863787 4864288 -184415266 + L1MEc LINE L1 2102 2583 -3632 544 68 0 34 chr6 4864290 4864378 -184415176 + (GGAGAA)n Simple_repeat Simple_repeat 3 87 0 782 265 251 49 chr6 4864389 4864875 -184414679 + MLT1E LTR MaLR 10 593 0 447 52 0 0 chr6 4864906 4864964 -184414590 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 333 330 0 9 chr6 4865172 4865281 -184414273 - MIR SINE MIR -98 164 57 2547 58 0 0 chr6 4865390 4865698 -184413856 - AluY SINE Alu -3 308 1 1728 139 0 35 chr6 4866303 4866591 -184412963 + AluJb SINE Alu 1 278 -34 2304 70 0 0 chr6 4866769 4867067 -184412487 - AluY SINE Alu -9 302 5 269 270 14 0 chr6 4868112 4868186 -184411368 + (TG)n Simple_repeat Simple_repeat 1 75 0 608 248 56 47 chr6 4868205 4868419 -184411135 - L1ME1 LINE L1 -5 6161 5946 310 278 31 52 chr6 4869509 4869606 -184409948 + L1M4 LINE L1 5248 5342 -804 480 195 16 47 chr6 4869606 4869688 -184409866 + L1MB3 LINE L1 6058 6136 -47 768 179 0 8 chr6 4869688 4869822 -184409732 + FLAM_A SINE Alu 1 133 0 480 195 16 47 chr6 4869822 4869867 -184409687 + L1MB3 LINE L1 6136 6181 -2 23 54 0 0 chr6 4869867 4869904 -184409650 + AT_rich Low_complexity Low_complexity 1 37 0 2017 250 104 18 chr6 4869920 4870317 -184409237 + L1ME3A LINE L1 5290 5651 -519 1648 152 39 7 chr6 4870317 4870600 -184408954 + AluJo SINE Alu 1 292 -20 2017 250 104 18 chr6 4870600 4870988 -184408566 + L1ME3A LINE L1 5651 6152 -18 402 21 0 0 chr6 4870988 4871035 -184408519 + (TC)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr6 4871034 4871061 -184408493 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 2083 115 0 0 chr6 4871061 4871357 -184408197 - AluSg SINE Alu -14 296 1 1800 158 0 0 chr6 4871413 4871691 -184407863 - AluSx SINE Alu -34 278 1 1767 174 0 0 chr6 4871726 4872025 -184407529 + AluSx SINE Alu 1 299 -13 2179 156 5 22 chr6 4872656 4873027 -184406527 - MLT1A1 LTR MaLR 0 365 1 652 242 27 13 chr6 4873097 4873246 -184406308 + MIR SINE MIR 84 234 -28 195 42 0 0 chr6 4873282 4873306 -184406248 + (ATG)n Simple_repeat Simple_repeat 3 26 0 330 302 12 0 chr6 4873334 4873420 -184406134 - L2 LINE L2 -189 3083 2997 237 65 0 0 chr6 4873438 4873469 -184406085 + (A)n Simple_repeat Simple_repeat 1 31 0 195 146 55 109 chr6 4873609 4873664 -184405890 - L3 LINE CR1 -1090 487 436 1000 156 22 11 chr6 4874031 4874211 -184405343 - MLT1B LTR MaLR -1 389 208 273 225 14 14 chr6 4874255 4874326 -184405228 + L1ME3A LINE L1 6031 6101 -69 1289 156 100 26 chr6 4874326 4874400 -184405154 - MLT1B LTR MaLR -101 289 222 276 30 0 0 chr6 4874400 4874433 -184405121 + (TA)n Simple_repeat Simple_repeat 2 34 0 1563 108 0 0 chr6 4874433 4874647 -184404907 - AluSg/x SINE Alu -27 283 70 1289 156 100 26 chr6 4874647 4874840 -184404714 - MLT1B LTR MaLR -167 223 1 1112 181 45 0 chr6 4875463 4875684 -184403870 + L1MB3 LINE L1 5915 6145 -38 1074 159 125 4 chr6 4875689 4875921 -184403633 + AluJb SINE Alu 40 299 -13 2118 102 3 3 chr6 4875982 4876275 -184403279 + AluSx SINE Alu 1 293 -19 5434 104 1 5 chr6 4878505 4879275 -184400279 - L1PB2 LINE L1 0 6151 5385 1352 61 0 0 chr6 4879275 4879440 -184400114 - AluY SINE Alu 0 311 147 6437 184 7 16 chr6 4879440 4880795 -184398759 - L1PB2 LINE L1 -745 5401 4059 192 293 37 12 chr6 4881195 4881277 -184398277 + MIR SINE MIR 155 238 -24 495 33 0 0 chr6 4881505 4881566 -184397988 + (TC)n Simple_repeat Simple_repeat 1 61 0 468 0 0 0 chr6 4881565 4881617 -184397937 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 702 172 15 1 chr6 4881927 4882070 -184397484 + L1 LINE L1 3607 3756 -2390 3131 147 8 0 chr6 4882581 4883065 -184396489 + L1 LINE L1 3742 4229 -1917 239 217 0 33 chr6 4883084 4883144 -184396410 - FRAM/FAM SINE Alu -109 57 1 2394 103 3 0 chr6 4883150 4883460 -184396094 - AluSx SINE Alu -1 311 1 749 118 118 33 chr6 4883463 4883589 -184395965 - L1MB4 LINE L1 -213 5967 5824 2877 169 75 51 chr6 4883589 4884299 -184395255 - LTR8A LTR ERV1 0 727 1 749 118 118 33 chr6 4884299 4884325 -184395229 - L1MB4 LINE L1 -356 5824 5802 1039 162 17 17 chr6 4884333 4884506 -184395048 + AluJo SINE Alu 85 257 -55 728 153 0 0 chr6 4884509 4884620 -184394934 + AluJb SINE Alu 198 308 -4 307 353 77 23 chr6 4884625 4884730 -184394824 + MIR SINE MIR 30 128 -134 1939 216 59 22 chr6 4884730 4885271 -184394283 - MER34B LTR ERV1 0 565 5 307 353 77 23 chr6 4885271 4885386 -184394168 + MIR SINE MIR 128 262 0 2371 82 0 3 chr6 4885757 4886051 -184393503 - AluSc SINE Alu -16 293 1 2509 78 0 0 chr6 4887424 4887732 -184391822 - AluY SINE Alu -3 308 1 4974 174 49 26 chr6 4888445 4889436 -184390118 + L1MC3 LINE L1 6687 7705 -80 279 0 0 0 chr6 4889436 4889467 -184390087 + (TG)n Simple_repeat Simple_repeat 2 32 0 4974 174 49 26 chr6 4889467 4889537 -184390017 + L1MC3 LINE L1 7705 7772 -13 1846 166 0 20 chr6 4889538 4889834 -184389720 - AluJo SINE Alu -22 290 1 1431 212 42 31 chr6 4889990 4890349 -184389205 - MLT1A2 LTR MaLR -11 363 1 4401 195 45 57 chr6 4891197 4892293 -184387261 - L1MD2 LINE L1 -22 6320 5238 4426 230 93 40 chr6 4892293 4892485 -184387069 - L1MD2 LINE L1 -1332 4797 4617 189 0 0 0 chr6 4892485 4892506 -184387048 + (CA)n Simple_repeat Simple_repeat 2 22 0 4426 230 93 40 chr6 4892506 4893532 -184386022 - L1MD2 LINE L1 -1512 4617 3467 1606 192 11 3 chr6 4893532 4893819 -184385735 - AluJo SINE Alu -23 289 1 4426 230 93 40 chr6 4893819 4894253 -184385301 - L1MD2 LINE L1 -2662 3467 3057 575 209 74 0 chr6 4894240 4894388 -184385166 - L1MD2 LINE L1 -3302 2827 2669 * 818 247 38 13 chr6 4894509 4894744 -184384810 - L1MD2 LINE L1 -3450 2679 2439 2413 233 106 22 chr6 4894748 4894782 -184384772 - L1MD2 LINE L1 -3876 2434 2404 2196 108 118 45 chr6 4894782 4895093 -184384461 + MSTA LTR MaLR 1 349 -79 1772 135 20 94 chr6 4895093 4895434 -184384120 + AluYb8 SINE Alu 1 316 -2 2196 108 118 45 chr6 4895434 4895519 -184384035 + MSTA LTR MaLR 349 426 -2 2413 233 106 22 chr6 4895519 4896297 -184383257 - L1MD2 LINE L1 -3906 2404 1554 351 239 104 33 chr6 4896291 4896577 -184382977 - L1MD2 LINE L1 -5088 1046 725 * 304 287 84 72 chr6 4896620 4896979 -184382575 - L1MD2 LINE L1 -5487 632 270 2273 23 0 0 chr6 4897181 4897442 -184382112 + L1PA4 LINE L1 5891 6151 -4 250 262 285 12 chr6 4897584 4897756 -184381798 + MIR SINE MIR 19 237 -25 22 0 0 0 chr6 4898095 4898117 -184381437 + AT_rich Low_complexity Low_complexity 1 22 0 1714 197 58 42 chr6 4899901 4900182 -184379372 + LTR40a LTR ERVL 82 374 -145 3279 151 30 0 chr6 4900182 4900681 -184378873 + MLT2B3 LTR ERVL 1 519 -35 261 0 0 0 chr6 4900681 4900710 -184378844 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3279 151 30 0 chr6 4900710 4900748 -184378806 + MLT2B3 LTR ERVL 519 554 0 1714 197 58 42 chr6 4900748 4900897 -184378657 + LTR40a LTR ERVL 374 519 0 21 0 0 0 chr6 4901615 4901636 -184377918 + AT_rich Low_complexity Low_complexity 1 21 0 2128 93 0 0 chr6 4902327 4902597 -184376957 - AluSc SINE Alu -4 305 36 2247 88 10 3 chr6 4903229 4903523 -184376031 - AluSx SINE Alu -16 296 1 180 0 0 0 chr6 4903526 4903546 -184376008 + (T)n Simple_repeat Simple_repeat 1 20 0 281 365 0 0 chr6 4903848 4904018 -184375536 + (CAAG)n Simple_repeat Simple_repeat 1 170 0 436 220 136 0 chr6 4904217 4904335 -184375219 + MIR SINE MIR 97 230 -32 2690 29 3 0 chr6 4906105 4906412 -184373142 + AluY SINE Alu 1 308 -3 23 78 0 0 chr6 4906789 4906840 -184372714 + GC_rich Low_complexity Low_complexity 1 51 0 1095 147 101 150 chr6 4908097 4908403 -184371151 + AluJo SINE Alu 2 292 -10 2207 105 7 3 chr6 4908457 4908752 -184370802 + AluSx SINE Alu 1 296 -16 600 298 31 28 chr6 4909376 4909698 -184369856 + L2 LINE L2 2454 2776 -538 230 261 14 14 chr6 4910027 4910096 -184369458 + L1P LINE L1 2749 2817 -3329 2485 83 0 13 chr6 4910113 4910426 -184369128 + AluSc SINE Alu 1 309 0 2215 109 0 0 chr6 4910918 4911235 -184368319 + AluSx SINE Alu 1 317 0 1937 161 73 3 chr6 4911241 4911582 -184367972 + MLT1A1 LTR MaLR 1 365 0 1964 151 3 7 chr6 4911762 4912053 -184367501 + AluJo SINE Alu 1 290 -22 199 276 143 9 chr6 4912428 4912533 -184367021 - MIR SINE MIR -11 251 133 895 136 11 68 chr6 4912725 4912901 -184366653 - AluJb SINE Alu -18 294 129 1659 165 81 9 chr6 4913104 4913230 -184366324 - L1MB8 LINE L1 0 6178 6063 1702 125 42 42 chr6 4913230 4913518 -184366036 - AluJo SINE Alu -18 294 7 1659 165 81 9 chr6 4913518 4913736 -184365818 - L1MB8 LINE L1 -115 6063 5809 2101 129 0 0 chr6 4913808 4914087 -184365467 - AluSg SINE Alu -19 291 13 529 107 0 0 chr6 4914193 4914277 -184365277 - Alu SINE Alu 0 309 226 225 0 0 0 chr6 4914885 4914910 -184364644 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 758 142 0 0 chr6 4914924 4915044 -184364510 + L1MB2 LINE L1 6012 6131 -40 1469 152 9 4 chr6 4915045 4915275 -184364279 + AluJb SINE Alu 1 231 -81 478 104 30 0 chr6 4915307 4915374 -184364180 + AluJb SINE Alu 224 292 -20 273 47 116 0 chr6 4915376 4915419 -184364135 + L1MB2 LINE L1 6122 6169 -2 2060 153 3 0 chr6 4916209 4916504 -184363050 - AluJb SINE Alu -16 296 1 1752 159 33 0 chr6 4916780 4917051 -184362503 - AluJb SINE Alu -30 282 3 1854 232 119 10 chr6 4917307 4917795 -184361759 - MLT1H LTR MaLR 0 549 9 844 210 17 6 chr6 4918481 4918657 -184360897 + MER5B DNA MER1_type 1 178 0 2551 231 83 11 chr6 4919107 4919942 -184359612 - L1 LINE L1 -2478 3668 2774 1883 142 31 14 chr6 4919951 4920239 -184359315 - AluSx SINE Alu -19 293 1 489 70 28 28 chr6 4920243 4920314 -184359240 - Charlie1 DNA MER1_type -2011 750 680 18616 126 22 55 chr6 4920534 4923844 -184355710 - L1P LINE L1 -2934 3212 12 707 251 97 9 chr6 4923857 4924267 -184355287 - L1ME LINE L1 -676 5486 5045 955 143 0 0 chr6 4924403 4924536 -184355018 - FLAM_C SINE Alu -10 133 1 1592 179 98 29 chr6 4924539 4924795 -184354759 - L1MA4 LINE L1 -254 6046 5809 252 0 0 0 chr6 4924795 4924823 -184354731 + (TG)n Simple_repeat Simple_repeat 2 29 0 1592 179 98 29 chr6 4924823 4924856 -184354698 - L1MA4 LINE L1 -491 5809 5780 1697 149 0 0 chr6 4924856 4925098 -184354456 - AluSx SINE Alu -70 242 1 1592 179 98 29 chr6 4925098 4925186 -184354368 - L1MA4 LINE L1 -520 5780 5642 1524 190 104 41 chr6 4925189 4925262 -184354292 - HERVL74 LTR ERVL -4071 1614 1547 1887 148 0 17 chr6 4925262 4925589 -184353965 - AluSx SINE Alu 0 312 1 1524 190 104 41 chr6 4925589 4925930 -184353624 - HERVL74 LTR ERVL -4138 1547 1174 24 0 0 0 chr6 4925930 4925954 -184353600 + AT_rich Low_complexity Low_complexity 1 24 0 1548 158 17 45 chr6 4926202 4926524 -184353030 - AluJb SINE Alu 0 315 2 1955 135 7 4 chr6 4927895 4928176 -184351378 + AluJo SINE Alu 1 282 -30 192 40 0 0 chr6 4928181 4928206 -184351348 + (GA)n Simple_repeat Simple_repeat 2 26 0 241 156 16 16 chr6 4928206 4928245 -184351309 + GA-rich Low_complexity Low_complexity 3 65 0 200 250 0 59 chr6 4929860 4929928 -184349626 + MIR3 SINE MIR 114 177 -31 2082 72 7 65 chr6 4929947 4930151 -184349403 - AluSx SINE Alu 0 323 142 2093 129 0 19 chr6 4930151 4930469 -184349085 - AluSx SINE Alu 0 312 1 2082 72 7 65 chr6 4930469 4930596 -184348958 - AluSx SINE Alu -181 142 9 211 316 0 42 chr6 4931079 4931174 -184348380 - L2 LINE L2 -533 2781 2691 2192 97 3 7 chr6 4931195 4931484 -184348070 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr6 4931484 4931509 -184348045 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 257 111 0 0 chr6 4931509 4931545 -184348009 + Alu SINE Alu 252 287 -14 342 67 0 0 chr6 4931545 4931590 -184347964 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2508 144 18 81 chr6 4931685 4931735 -184347819 + L1MB7 LINE L1 5647 5699 -485 1947 188 14 3 chr6 4931735 4932096 -184347458 + MLT1A1 LTR MaLR 1 365 0 2508 144 18 81 chr6 4932096 4932599 -184346955 + L1MB7 LINE L1 5699 6165 -19 1500 181 28 11 chr6 4932633 4932920 -184346634 + AluJo SINE Alu 15 306 -6 181 336 105 14 chr6 4932937 4933080 -184346474 - L2 LINE L2 -711 2603 2448 320 317 19 0 chr6 4933863 4933967 -184345587 + MER3 DNA MER1_type 1 106 -103 912 144 139 16 chr6 4934504 4934698 -184344856 + MER20 DNA MER1_type 2 219 0 212 273 18 109 chr6 4935751 4935861 -184343693 + MIR3 SINE MIR 97 196 -12 283 244 12 12 chr6 4935913 4935999 -184343555 + CT-rich Low_complexity Low_complexity 2 87 0 205 217 116 74 chr6 4936562 4936751 -184342803 + L2 LINE L2 2555 2751 -563 1980 230 23 7 chr6 4936823 4937266 -184342288 - MER82 DNA MER2_type 0 653 204 2437 141 53 2 chr6 4937399 4937810 -184341744 + MSTB1 LTR MaLR 1 432 0 270 0 0 0 chr6 4937818 4937848 -184341706 + (T)n Simple_repeat Simple_repeat 1 30 0 544 262 28 14 chr6 4938162 4938303 -184341251 - MER82 DNA MER2_type -510 143 1 233 146 21 0 chr6 4938607 4938655 -184340899 + CT-rich Low_complexity Low_complexity 3 51 0 218 184 0 0 chr6 4938815 4938853 -184340701 + (TATG)n Simple_repeat Simple_repeat 3 40 0 188 290 48 0 chr6 4938958 4939020 -184340534 + L2 LINE L2 3239 3303 -10 519 237 9 0 chr6 4940367 4940481 -184339073 - L2 LINE L2 -3 3310 3196 693 279 44 24 chr6 4940800 4941209 -184338345 + L1M4 LINE L1 4596 5012 -1134 1299 125 36 10 chr6 4941209 4941401 -184338153 + AluJo SINE Alu 86 282 -30 453 115 0 0 chr6 4941406 4941493 -184338061 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 970 128 0 0 chr6 4941517 4941650 -184337904 + FLAM_C SINE Alu 1 133 0 1251 153 8 16 chr6 4941650 4941892 -184337662 + L1MA4 LINE L1 6055 6294 -6 676 217 31 25 chr6 4941893 4942054 -184337500 + HERVL74 LTR ERVL 1610 1771 -3914 1101 111 6 19 chr6 4942113 4942275 -184337279 + AluSg/x SINE Alu 132 291 -18 1386 194 23 0 chr6 4943432 4943690 -184335864 + HERVL74 LTR ERVL 1765 2028 -3657 * 2387 194 52 61 chr6 4943678 4944331 -184335223 + HERVL74 LTR ERVL 4615 5261 -424 845 250 23 5 chr6 4944361 4944577 -184334977 + HERVL74 LTR ERVL 5376 5595 -90 1890 158 105 3 chr6 4944804 4945177 -184334377 + MER74A LTR ERVL 121 531 -27 2415 86 0 6 chr6 4945210 4945525 -184334029 - AluSq SINE Alu 0 313 1 294 211 0 0 chr6 4946171 4946223 -184333331 - MLT1H1 LTR MaLR -3 592 541 2444 158 10 2 chr6 4946223 4946640 -184332914 + L1MB3 LINE L1 5659 6078 -105 772 229 70 111 chr6 4947217 4947247 -184332307 - MLT1H1 LTR MaLR -37 518 488 2334 59 0 0 chr6 4947247 4947518 -184332036 - AluY SINE Alu -18 293 23 772 229 70 111 chr6 4947518 4947906 -184331648 - MLT1H1 LTR MaLR -67 488 106 1919 150 0 7 chr6 4947906 4948199 -184331355 + AluJb SINE Alu 5 295 -17 772 229 70 111 chr6 4948199 4948301 -184331253 - MLT1H1 LTR MaLR -449 106 1 428 247 0 22 chr6 4948377 4948466 -184331088 - MER81 DNA DNA -27 87 1 378 0 0 0 chr6 4949385 4949427 -184330127 + (TG)n Simple_repeat Simple_repeat 2 43 0 1200 157 47 120 chr6 4949431 4949730 -184329824 - AluJo SINE Alu -35 277 1 211 250 11 91 chr6 4950629 4950717 -184328837 + MIR SINE MIR 92 144 -64 2245 119 0 0 chr6 4950765 4951060 -184328494 - AluSg SINE Alu -15 295 1 8893 161 122 33 chr6 4951157 4952765 -184326789 + L1M4c LINE L1 31 1844 -4540 2203 143 41 48 chr6 4952765 4953200 -184326354 - MSTB1 LTR MaLR 0 432 1 8893 161 122 33 chr6 4953200 4953550 -184326004 + L1M4c LINE L1 1844 2162 -4222 745 183 0 29 chr6 4953553 4953690 -184325864 - FLAM_C SINE Alu 0 133 1 729 101 36 36 chr6 4953719 4953858 -184325696 + L1MB3 LINE L1 6044 6182 -1 220 277 24 12 chr6 4954492 4954575 -184324979 + GA-rich Low_complexity Low_complexity 1 84 0 1074 153 0 28 chr6 4954577 4954754 -184324800 + FRAM SINE Alu 5 176 0 442 343 78 0 chr6 4955292 4955511 -184324043 - MIR SINE MIR -7 255 20 5586 110 52 5 chr6 4955661 4956494 -184323060 + MER4D LTR ERV1 1 872 0 262 129 32 32 chr6 4957021 4957083 -184322471 + CT-rich Low_complexity Low_complexity 1 62 0 840 153 98 37 chr6 4957092 4957255 -184322299 - FAM SINE Alu 0 175 3 4126 198 41 13 chr6 4957262 4958166 -184321388 - Charlie1a DNA MER1_type -268 1187 259 738 205 12 58 chr6 4958170 4958341 -184321213 - Charlie1a DNA MER1_type -1291 164 2 2287 89 13 7 chr6 4958527 4958829 -184320725 + AluSx SINE Alu 1 304 -8 1920 112 45 17 chr6 4958857 4959144 -184320410 - AluJo SINE Alu -17 295 1 1815 179 0 0 chr6 4960151 4960453 -184319101 + AluJo SINE Alu 1 302 -10 521 216 181 15 chr6 4960695 4960894 -184318660 + LTR48 LTR ERV1 490 721 -66 1029 152 0 18 chr6 4960894 4961058 -184318496 - FRAM SINE Alu -16 160 1 512 120 13 0 chr6 4961058 4961133 -184318421 + LTR49 LTR ERV1 520 595 0 496 283 122 5 chr6 4961143 4961348 -184318206 - L1MC/D LINE L1 -2021 5787 5559 1868 136 0 85 chr6 4961589 4961920 -184317634 - AluSx SINE Alu -9 303 1 571 189 28 56 chr6 4962411 4962554 -184317000 + Tigger8 DNA MER2_type 154 292 -374 298 280 93 47 chr6 4962689 4962925 -184316629 + L1MEd LINE L1 496 742 -5377 1207 141 6 0 chr6 4963168 4963345 -184316209 - AluJo SINE Alu -3 309 132 281 189 44 0 chr6 4963346 4963436 -184316118 + (TA)n Simple_repeat Simple_repeat 2 95 0 660 122 122 0 chr6 4963437 4963544 -184316010 - FLAM_C SINE Alu -13 120 1 641 208 63 35 chr6 4965445 4965665 -184313889 - L1MC2 LINE L1 -1 6343 6159 714 194 0 16 chr6 4965667 4965796 -184313758 - AluJo SINE Alu -184 128 2 2397 154 67 29 chr6 4965803 4966393 -184313161 - L1MC2 LINE L1 -2 6298 5721 48 43 0 0 chr6 4966397 4966466 -184313088 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 4968134 4968155 -184311399 + AT_rich Low_complexity Low_complexity 1 21 0 1527 207 200 18 chr6 4968320 4968774 -184310780 - MLT1F LTR MaLR -3 539 3 558 53 13 0 chr6 4969813 4969888 -184309666 + L1PA5 LINE L1 6079 6154 0 2255 98 6 3 chr6 4969894 4970221 -184309333 - HSMAR2 DNA Mariner -970 332 5 761 171 32 21 chr6 4970282 4970469 -184309085 - Charlie1 DNA MER1_type -7 2754 2566 517 228 19 84 chr6 4970509 4970546 -184309008 + L2 LINE L2 3113 3151 -162 197 33 33 0 chr6 4970546 4970576 -184308978 + (TA)n Simple_repeat Simple_repeat 2 32 0 2249 92 14 3 chr6 4970576 4970871 -184308683 - AluSc SINE Alu -11 298 1 517 228 19 84 chr6 4970871 4971047 -184308507 + L2 LINE L2 3149 3313 0 408 261 96 50 chr6 4971083 4971282 -184308272 - MIR SINE MIR -26 236 29 314 252 36 58 chr6 4971468 4971607 -184307947 + L1ME4a LINE L1 5978 6113 -8 1653 182 27 3 chr6 4971686 4971983 -184307571 + AluJo SINE Alu 1 304 -8 2194 103 7 3 chr6 4972003 4972295 -184307259 + AluSg SINE Alu 2 294 -16 21 0 0 0 chr6 4972427 4972448 -184307106 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 0 0 chr6 4972533 4972622 -184306932 - MER96B DNA MER1_type? 0 417 329 564 178 0 0 chr6 4972635 4972742 -184306812 + (TG)n Simple_repeat Simple_repeat 2 108 0 2074 101 0 24 chr6 4972750 4973037 -184306517 - AluSx SINE Alu -32 280 1 4725 88 5 0 chr6 4973037 4973660 -184305894 - L1PA11 LINE L1 -135 6039 5414 684 89 0 0 chr6 4973669 4973759 -184305795 - AluSp/q SINE Alu -11 302 213 685 159 119 99 chr6 4973865 4974117 -184305437 - MER69 DNA AcHobo -5 2521 2265 1606 126 56 34 chr6 4974186 4974455 -184305099 + AluSx SINE Alu 1 275 -37 31 0 0 0 chr6 4974456 4974487 -184305067 + AT_rich Low_complexity Low_complexity 1 31 0 255 133 22 44 chr6 4974571 4974706 -184304848 + (TA)n Simple_repeat Simple_repeat 1 132 0 240 283 152 0 chr6 4974849 4974987 -184304567 - MLT1E LTR MaLR -398 195 37 472 277 32 27 chr6 4975004 4975313 -184304241 - MER69 DNA AcHobo -2080 446 95 225 0 0 0 chr6 4975490 4975515 -184304039 + (T)n Simple_repeat Simple_repeat 1 25 0 1027 138 27 43 chr6 4975522 4975710 -184303844 + Tigger1 DNA MER2_type 1625 1809 -609 567 53 0 0 chr6 4975716 4975792 -184303762 - L1PA6 LINE L1 0 6154 6079 195 162 0 0 chr6 4975872 4975909 -184303645 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 2610 133 36 2 chr6 4975929 4976343 -184303211 + MSTA LTR MaLR 1 428 0 237 79 0 0 chr6 4976835 4976873 -184302681 - L1MB3 LINE L1 -2 6181 6144 1959 138 0 26 chr6 4977034 4977338 -184302216 - AluJb SINE Alu -16 296 1 268 317 62 21 chr6 4977453 4977598 -184301956 + MIR SINE MIR 20 170 -92 266 344 61 0 chr6 4977760 4977891 -184301663 + MER20 DNA MER1_type 55 193 -26 291 302 128 23 chr6 4977966 4978138 -184301416 - MLT1L LTR MaLR -204 411 222 343 299 107 21 chr6 4979399 4979586 -184299968 + MIR SINE MIR 16 218 -44 30 27 0 0 chr6 4980011 4980048 -184299506 + AT_rich Low_complexity Low_complexity 1 37 0 1611 212 48 75 chr6 4980068 4980625 -184298929 - MER34 LTR ERV1 0 542 1 510 191 296 35 chr6 4981936 4982135 -184297419 + MLT1G1 LTR MaLR 340 595 0 402 281 60 6 chr6 4982524 4982691 -184296863 + L2 LINE L2 1986 2161 -1153 272 300 0 12 chr6 4982705 4982785 -184296769 + MER21B LTR ERV1 1 79 -784 1257 232 88 20 chr6 4982876 4983443 -184296111 + MER21B LTR ERV1 98 834 -97 361 385 78 19 chr6 4983447 4983860 -184295694 + L2 LINE L2 2334 2770 -544 342 190 25 13 chr6 4984193 4984272 -184295282 - MER96 DNA MER1_type? -90 85 6 407 131 131 164 chr6 4984989 4985081 -184294473 + MER5A DNA MER1_type 13 98 -91 665 172 0 8 chr6 4985081 4985203 -184294351 + FLAM_A SINE Alu 1 121 -12 407 131 131 164 chr6 4985203 4985293 -184294261 + MER5A DNA MER1_type 98 189 0 21 71 0 0 chr6 4986280 4986322 -184293232 + GC_rich Low_complexity Low_complexity 1 42 0 1428 189 23 49 chr6 4989076 4989173 -184290381 + MER58B DNA MER1_type 1 99 -2321 2358 105 3 6 chr6 4989173 4989487 -184290067 - AluSq SINE Alu 0 313 1 1428 189 23 49 chr6 4989487 4989739 -184289815 + MER58B DNA MER1_type 99 341 0 21 36 0 0 chr6 4990422 4990450 -184289104 + AT_rich Low_complexity Low_complexity 1 28 0 293 0 27 0 chr6 4991108 4991145 -184288409 + (CA)n Simple_repeat Simple_repeat 2 39 0 2170 104 0 27 chr6 4993522 4993819 -184285735 + AluSg SINE Alu 1 289 -21 1849 180 0 7 chr6 4995292 4995598 -184283956 + AluJo SINE Alu 1 304 -8 1415 150 42 0 chr6 4995930 4996217 -184283337 + L1MA4 LINE L1 5997 6295 -5 427 225 167 8 chr6 4996238 4996358 -184283196 + MER20 DNA MER1_type 50 188 -31 2397 145 13 3 chr6 4996360 4996752 -184282802 - MER57A LTR ERV1 0 403 8 2143 118 0 7 chr6 4996788 4997107 -184282447 + AluSx SINE Alu 1 317 0 615 225 13 13 chr6 4997112 4997263 -184282291 + L1MC4a LINE L1 7657 7807 -1 1912 167 10 0 chr6 4997304 4997598 -184281956 + AluJo SINE Alu 5 301 -11 263 310 80 37 chr6 4997675 4997862 -184281692 + MIR SINE MIR 16 210 -52 1577 155 0 0 chr6 4998101 4998346 -184281208 - MSTC LTR MaLR -2 426 182 498 103 0 0 chr6 4998361 4998429 -184281125 - AluJ/FRAM SINE Alu -27 285 218 1759 158 7 31 chr6 4998451 4998743 -184280811 - AluJo SINE Alu -27 285 1 834 143 7 7 chr6 4998748 4998895 -184280659 - MSTC LTR MaLR -281 147 1 640 184 8 16 chr6 4999090 4999215 -184280339 - FLAM_A SINE Alu -9 124 1 504 245 123 0 chr6 4999578 4999733 -184279821 + L1ME LINE L1 5566 5739 -431 1665 164 0 18 chr6 5000299 5000475 -184279079 - AluJb SINE Alu -16 296 125 360 43 0 0 chr6 5000475 5000521 -184279033 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1665 164 0 18 chr6 5000521 5000618 -184278936 - AluJb SINE Alu -187 125 28 779 167 0 0 chr6 5000702 5000834 -184278720 - FLAM_C SINE Alu 0 133 2 386 232 104 16 chr6 5000836 5000961 -184278593 - MIR SINE MIR -112 150 15 463 304 87 11 chr6 5002472 5002656 -184276898 - MIR SINE MIR -6 256 59 217 227 0 0 chr6 5002761 5002805 -184276749 - MIR SINE MIR -114 94 51 1319 177 92 44 chr6 5002891 5003185 -184276369 - AluJo SINE Alu -4 308 1 2193 106 7 13 chr6 5004723 5005026 -184274528 - AluSg SINE Alu -7 303 3 2085 144 0 3 chr6 5005370 5005668 -184273886 - AluJb SINE Alu -15 297 1 194 257 9 64 chr6 5005859 5005968 -184273586 + L2 LINE L2 2426 2528 -786 241 279 25 0 chr6 5006199 5006278 -184273276 - MLT1H LTR MaLR 0 549 469 2276 94 0 3 chr6 5006623 5006933 -184272621 + AluSx SINE Alu 1 309 0 352 333 129 29 chr6 5007013 5007392 -184272162 + L2 LINE L2 2856 3272 0 2033 82 78 4 chr6 5008838 5009107 -184270447 + AluSg SINE Alu 1 289 -21 193 326 27 82 chr6 5009559 5009743 -184269811 - MER5B DNA MER1_type 0 178 5 360 222 25 0 chr6 5009810 5009891 -184269663 - MER5A DNA MER1_type -82 107 25 291 241 25 0 chr6 5011929 5012008 -184267546 - MER5A DNA MER1_type -100 89 9 390 255 221 7 chr6 5012550 5012699 -184266855 + L3 LINE CR1 1392 1572 -5 291 245 116 54 chr6 5012860 5013007 -184266547 + MIR3 SINE MIR 41 196 -12 252 237 96 74 chr6 5013335 5013470 -184266084 + L2 LINE L2 3133 3270 -2 1855 132 55 4 chr6 5014249 5014522 -184265032 + AluSg SINE Alu 5 291 -19 915 129 0 0 chr6 5014826 5014958 -184264596 - FLAM_A SINE Alu -1 132 1 814 255 45 52 chr6 5015250 5015517 -184264037 + MLT1J LTR MaLR 243 507 -4 1550 58 44 26 chr6 5015732 5015958 -184263596 + MER30 DNA MER1_type 1 230 0 796 273 124 12 chr6 5015990 5016393 -184263161 - L1ME4a LINE L1 -118 6003 5556 215 243 0 57 chr6 5017084 5017154 -184262400 + MIR SINE MIR 184 249 -13 2323 77 28 0 chr6 5018367 5018653 -184260901 + AluSc SINE Alu 1 294 -15 1024 160 0 0 chr6 5018825 5018975 -184260579 + FAM SINE Alu 12 161 -24 1968 137 0 27 chr6 5019188 5019509 -184260045 - AluSx SINE Alu 0 313 1 2076 147 3 10 chr6 5020597 5020911 -184258643 + AluSx SINE Alu 1 312 0 2051 122 21 7 chr6 5021000 5021287 -184258267 - AluSg SINE Alu -19 291 1 816 137 24 0 chr6 5021465 5021589 -184257965 - LTR12 LTR ERV1 -229 485 359 280 236 0 0 chr6 5021589 5021661 -184257893 - LTR30 LTR ERV1 -98 624 553 1478 135 23 23 chr6 5021662 5021964 -184257590 - LTR12 LTR ERV1 -406 2032 55 278 211 0 0 chr6 5021964 5022016 -184257538 - LTR30 LTR ERV1 -670 52 1 402 191 0 0 chr6 5025405 5025473 -184254081 - AluJ/FLAM SINE Alu -243 69 2 200 289 24 24 chr6 5025882 5025965 -184253589 - MER5B DNA MER1_type -74 104 22 200 261 118 67 chr6 5025982 5026101 -184253453 + L2 LINE L2 3102 3226 -46 190 299 26 26 chr6 5026255 5026332 -184253222 + L2 LINE L2 2678 2754 -560 2461 159 30 13 chr6 5027578 5028049 -184251505 + L1MB7 LINE L1 5645 6123 -61 2154 119 14 0 chr6 5028049 5028342 -184251212 - AluSx SINE Alu -15 297 1 993 113 0 0 chr6 5028344 5028477 -184251077 - AluJb SINE Alu -179 133 1 262 143 79 0 chr6 5028477 5028540 -184251014 + L1MB8 LINE L1 6111 6178 0 1005 186 64 25 chr6 5028613 5028893 -184250661 + MER33 DNA MER1_type 31 321 -3 691 217 7 0 chr6 5028999 5029151 -184250403 - L1MD2 LINE L1 -15 6344 6192 2093 200 47 12 chr6 5030335 5030821 -184248733 - MLT1D LTR MaLR 0 505 3 827 173 0 0 chr6 5032510 5032643 -184246911 + FLAM_C SINE Alu 1 133 0 228 198 151 47 chr6 5032893 5032979 -184246575 + L1ME LINE L1 5801 5895 -226 214 336 124 46 chr6 5033288 5033505 -184246049 - MIR SINE MIR -11 251 18 195 42 0 0 chr6 5033506 5033530 -184246024 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 497 270 68 0 chr6 5034565 5034694 -184244860 - MER5B DNA MER1_type 0 178 34 2893 174 56 18 chr6 5034694 5035298 -184244256 - L1MB5 LINE L1 -6 6168 5542 497 270 68 0 chr6 5035298 5035331 -184244223 - MER5B DNA MER1_type -144 34 5 565 221 164 64 chr6 5035385 5035856 -184243698 + L1MC5 LINE L1 7398 7915 -46 2874 173 50 4 chr6 5036835 5037380 -184242174 - L1MB3 LINE L1 -10 6173 5604 411 286 160 9 chr6 5037487 5037700 -184241854 + MIR SINE MIR 6 250 -12 2916 182 18 2 chr6 5037920 5038470 -184241084 - L1MB7 LINE L1 -9 6175 5617 2055 149 0 9 chr6 5039294 5039609 -184239945 + AluJb SINE Alu 1 312 0 284 321 51 36 chr6 5040098 5040294 -184239260 - MIR SINE MIR 0 262 64 1600 152 57 4 chr6 5040626 5040889 -184238665 + MER57A LTR ERV1 1 277 -126 1001 138 33 0 chr6 5040929 5041081 -184238473 - AluJb SINE Alu -11 301 145 1552 142 24 0 chr6 5041087 5041334 -184238220 + AluJb SINE Alu 44 296 -16 696 202 8 0 chr6 5041335 5041464 -184238090 + MER57A LTR ERV1 274 403 0 340 125 0 31 chr6 5041825 5041889 -184237665 + L1MB4 LINE L1 6119 6180 0 307 238 89 0 chr6 5042388 5042489 -184237065 + MIR3 SINE MIR 67 176 -32 189 337 22 11 chr6 5042659 5042751 -184236803 - MIR3 SINE MIR -12 196 104 264 291 93 0 chr6 5042941 5043027 -184236527 - MIR3 SINE MIR -52 156 63 1135 218 201 43 chr6 5043193 5043661 -184235893 + MLT1G LTR MaLR 36 577 -13 2385 67 40 0 chr6 5045448 5045747 -184233807 + AluY SINE Alu 1 311 0 285 288 0 0 chr6 5046462 5046535 -184233019 - MIR SINE MIR -86 176 104 213 39 0 0 chr6 5046972 5046998 -184232556 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 212 242 16 121 chr6 5047466 5047590 -184231964 - MIR SINE MIR -108 154 44 302 310 37 43 chr6 5047681 5047868 -184231686 + MLT1L LTR MaLR 105 290 -325 198 0 0 0 chr6 5049755 5049777 -184229777 + (TC)n Simple_repeat Simple_repeat 2 23 0 258 226 70 50 chr6 5050487 5050618 -184228936 - MIR SINE MIR -63 145 13 474 228 174 11 chr6 5051486 5051670 -184227884 + MIR SINE MIR 47 260 -2 2340 89 0 13 chr6 5052162 5052475 -184227079 - AluSc SINE Alu 0 309 1 430 300 80 34 chr6 5052714 5052951 -184226603 + MIR SINE MIR 2 249 -13 271 302 70 31 chr6 5053031 5053160 -184226394 + L2 LINE L2 3179 3312 -1 348 208 56 83 chr6 5053189 5053333 -184226221 - MIR3 SINE MIR -2 206 67 1798 150 25 0 chr6 5054196 5054482 -184225072 - AluSx SINE Alu -18 294 2 257 234 26 13 chr6 5054607 5054684 -184224870 + MIR SINE MIR 83 160 -102 2412 66 0 25 chr6 5055627 5055946 -184223608 + AluY SINE Alu 1 311 0 197 253 121 24 chr6 5055950 5056033 -184223521 - MIR SINE MIR -88 120 30 2083 123 7 3 chr6 5056171 5056473 -184223081 - AluSx SINE Alu -9 303 1 189 195 0 0 chr6 5059144 5059185 -184220369 + GA-rich Low_complexity Low_complexity 4 44 0 330 298 8 24 chr6 5059204 5059328 -184220226 + (TATG)n Simple_repeat Simple_repeat 2 123 0 2062 134 17 3 chr6 5059566 5059865 -184219689 - AluJo SINE Alu -9 303 1 267 255 37 85 chr6 5060436 5060624 -184218930 - L2 LINE L2 -1260 2054 1876 2003 91 53 138 chr6 5061449 5061846 -184217708 + THE1B LTR MaLR 2 364 0 29 47 0 0 chr6 5062233 5062276 -184217278 + AT_rich Low_complexity Low_complexity 1 43 0 204 261 0 0 chr6 5063286 5063332 -184216222 + MER5B DNA MER1_type 108 153 -25 303 136 0 0 chr6 5063566 5063625 -184215929 + (GA)n Simple_repeat Simple_repeat 2 60 0 1642 289 77 24 chr6 5063938 5064713 -184214841 - L1M LINE L1 -754 5392 4587 2078 102 53 0 chr6 5064713 5064998 -184214556 - AluSx SINE Alu -12 300 1 1642 289 77 24 chr6 5064998 5065092 -184214462 - L1M LINE L1 -1559 4587 4499 * 1884 251 93 29 chr6 5065090 5065775 -184213779 + L1ME3A LINE L1 5375 6103 -67 2367 106 0 0 chr6 5065778 5066080 -184213474 + AluSx SINE Alu 1 302 -10 2315 112 0 6 chr6 5066621 5066935 -184212619 - AluSx SINE Alu 0 312 1 24 91 0 0 chr6 5067106 5067172 -184212382 + AT_rich Low_complexity Low_complexity 1 66 0 183 203 95 14 chr6 5067677 5067751 -184211803 - MIR SINE MIR -71 191 112 442 242 11 0 chr6 5068019 5068110 -184211444 - AluJ/FLAM SINE Alu -219 93 2 1938 237 124 61 chr6 5069023 5069977 -184209577 + L1MC4 LINE L1 6891 7904 -138 234 176 59 0 chr6 5070043 5070111 -184209443 + L1MC4 LINE L1 7931 8002 -40 697 197 0 23 chr6 5070188 5070320 -184209234 - FLAM_A SINE Alu -4 129 1 307 244 122 0 chr6 5070594 5070676 -184208878 + MER82 DNA MER2_type 556 647 -6 252 0 0 0 chr6 5071575 5071603 -184207951 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 930 70 0 0 chr6 5071606 5071720 -184207834 - AluSg/x SINE Alu -25 285 172 475 265 111 17 chr6 5071840 5072021 -184207533 + L1ME LINE L1 5585 5782 -339 1039 245 119 14 chr6 5076690 5077160 -184202394 + MLT1G LTR MaLR 1 548 -42 2375 102 0 0 chr6 5077160 5077455 -184202099 - AluSg SINE Alu -15 295 1 431 300 50 7 chr6 5079112 5079252 -184200302 + L2 LINE L2 3119 3264 -8 429 205 32 3 chr6 5079259 5079430 -184200124 - MARNA DNA Mariner -197 389 161 21 0 0 0 chr6 5079539 5079560 -184199994 + AT_rich Low_complexity Low_complexity 1 21 0 2387 80 30 0 chr6 5079624 5079926 -184199628 + AluSx SINE Alu 1 311 -1 297 125 0 0 chr6 5080135 5080191 -184199363 + (A)n Simple_repeat Simple_repeat 1 56 0 283 127 0 18 chr6 5080245 5080300 -184199254 - L1MB4 LINE L1 0 6180 6127 3231 151 21 36 chr6 5080321 5080937 -184198617 - L1MB3 LINE L1 0 6183 5577 388 296 161 23 chr6 5082848 5083108 -184196446 + L2 LINE L2 2154 2449 -865 1265 155 33 0 chr6 5084928 5085141 -184194413 + L1MA8 LINE L1 6062 6281 -10 21 36 0 0 chr6 5085634 5085662 -184193892 + AT_rich Low_complexity Low_complexity 1 28 0 321 273 152 0 chr6 5085798 5085897 -184193657 - L2 LINE L2 0 3272 3159 207 100 0 0 chr6 5086296 5086326 -184193228 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 397 243 135 9 chr6 5086721 5086832 -184192722 - MIR SINE MIR -130 132 8 244 232 73 66 chr6 5087545 5087696 -184191858 + L1PA6 LINE L1 4897 5048 -1098 2278 112 0 0 chr6 5087795 5088091 -184191463 + AluSx SINE Alu 2 297 -15 2375 172 103 4 chr6 5088370 5088859 -184190695 + L1PA6 LINE L1 5603 6154 0 324 269 15 75 chr6 5088859 5088993 -184190561 + L1MC4a LINE L1 5811 5936 -1872 1513 157 71 31 chr6 5089159 5089282 -184190272 + AluJb SINE Alu 1 118 -194 204 97 0 0 chr6 5089282 5089313 -184190241 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1513 157 71 31 chr6 5089313 5089483 -184190071 + AluJb SINE Alu 118 306 -6 522 251 199 9 chr6 5089646 5089857 -184189697 + MIR SINE MIR 12 262 0 1835 137 18 7 chr6 5089868 5090145 -184189409 - AluJb SINE Alu -24 288 9 312 328 12 12 chr6 5090350 5090521 -184189033 + (TTAGGG)n Simple_repeat Simple_repeat 3 173 0 25 51 0 0 chr6 5091533 5091572 -184187982 + AT_rich Low_complexity Low_complexity 1 39 0 691 235 133 0 chr6 5091675 5091841 -184187713 + Tigger3(Golem) DNA MER2_type 1 188 -2841 228 313 137 16 chr6 5092107 5092356 -184187198 + L1ME LINE L1 5617 5895 -226 1243 244 217 6 chr6 5092725 5093200 -184186354 + L1MC4 LINE L1 7154 7728 -314 2227 101 7 0 chr6 5093836 5094132 -184185422 + AluSx SINE Alu 1 298 -14 378 93 0 0 chr6 5095115 5095169 -184184385 - MLT2D LTR ERVL 0 414 361 210 273 91 0 chr6 5095595 5095661 -184183893 + MIR SINE MIR 119 190 -72 1148 137 6 0 chr6 5095819 5095980 -184183574 - FRAM SINE Alu -4 162 1 269 303 18 55 chr6 5096050 5096215 -184183339 - Charlie7 DNA MER1_type 0 2612 2454 1931 115 3 78 chr6 5096421 5096752 -184182802 + AluSx SINE Alu 1 306 -6 343 235 12 71 chr6 5096887 5096972 -184182582 + L2 LINE L2 3132 3211 -61 413 301 92 5 chr6 5097051 5097257 -184182297 - MIR SINE MIR -3 259 36 363 273 56 37 chr6 5097496 5097657 -184181897 + MIR SINE MIR 13 176 -86 2287 100 0 10 chr6 5098484 5098795 -184180759 + AluSg1 SINE Alu 1 308 -1 2099 94 3 82 chr6 5098983 5099314 -184180240 + AluSq SINE Alu 2 306 -7 3779 147 75 22 chr6 5099948 5100641 -184178913 + L1MB8 LINE L1 5444 6173 -5 629 224 141 0 chr6 5101809 5101965 -184177589 - MER5B DNA MER1_type 0 178 1 23 54 0 0 chr6 5102089 5102126 -184177428 + AT_rich Low_complexity Low_complexity 1 37 0 374 233 20 130 chr6 5102933 5103079 -184176475 + MIR SINE MIR 20 149 -59 459 322 93 14 chr6 5105055 5105269 -184174285 - MIR SINE MIR -13 249 19 384 211 44 26 chr6 5105506 5105620 -184173934 + MER4C LTR ERV1 1 116 -349 810 220 39 35 chr6 5105639 5105912 -184173642 + MER4C LTR ERV1 278 465 0 351 210 210 14 chr6 5107298 5107436 -184172118 - MIR3 SINE MIR -7 201 37 267 313 111 14 chr6 5107796 5107940 -184171614 + MIR SINE MIR 77 234 -28 218 314 110 25 chr6 5108010 5108128 -184171426 - MIR3 SINE MIR -68 140 13 2015 136 0 10 chr6 5108864 5109158 -184170396 - AluSx SINE Alu -5 307 17 363 303 18 9 chr6 5110058 5110167 -184169387 - MIR3 SINE MIR -8 200 91 2641 153 27 0 chr6 5110289 5110735 -184168819 - L1MB2 LINE L1 -3 6168 5711 658 275 113 17 chr6 5111585 5111924 -184167630 + L1ME LINE L1 5388 5780 -341 2127 115 7 0 chr6 5111954 5112241 -184167313 + AluSq SINE Alu 1 289 -24 2292 89 3 16 chr6 5112243 5112559 -184166995 + AluSx SINE Alu 1 312 0 867 293 168 55 chr6 5112708 5113318 -184166236 - L1MC4a LINE L1 -376 5802 5271 2332 77 28 0 chr6 5113666 5113953 -184165601 - AluSp SINE Alu -18 295 1 247 356 46 31 chr6 5114355 5114678 -184164876 - L2 LINE L2 -954 2360 2033 5168 69 15 14 chr6 5114773 5115427 -184164127 + L1PA8 LINE L1 5514 6168 -4 328 259 55 82 chr6 5115508 5115557 -184163997 + L1M4 LINE L1 2879 2928 -3218 2056 141 0 3 chr6 5115557 5115854 -184163700 - AluSx SINE Alu -16 296 1 328 259 55 82 chr6 5115854 5115995 -184163559 + L1M4 LINE L1 2928 3065 -3081 2560 55 0 13 chr6 5115995 5116306 -184163248 + AluY SINE Alu 1 307 -4 328 259 55 82 chr6 5116306 5116334 -184163220 + L1M4 LINE L1 3065 3092 -3054 22 0 0 0 chr6 5117807 5117829 -184161725 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 5117861 5117882 -184161672 + AT_rich Low_complexity Low_complexity 1 21 0 338 113 9 12 chr6 5118271 5118502 -184161052 + AluSq SINE Alu 1 300 0 761 151 17 0 chr6 5120932 5121051 -184158503 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 5121402 5121423 -184158131 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 134 31 chr6 5121780 5121877 -184157677 - L2 LINE L2 -188 3084 2978 1094 127 6 35 chr6 5122429 5122602 -184156952 - AluSg/x SINE Alu -22 290 123 2384 99 0 0 chr6 5123459 5123762 -184155792 + AluSx SINE Alu 1 303 -9 1814 145 7 37 chr6 5123942 5124238 -184155316 + AluJo SINE Alu 1 287 -25 3617 99 73 4 chr6 5124405 5124898 -184154656 + MER1A DNA MER1_type 1 527 0 451 315 62 6 chr6 5128289 5128467 -184151087 + MIR SINE MIR 61 248 -14 207 339 66 25 chr6 5128489 5128610 -184150944 + MIR SINE MIR 131 256 -6 583 244 0 8 chr6 5128912 5129035 -184150519 + L2 LINE L2 3192 3313 0 2349 84 0 7 chr6 5129351 5129648 -184149906 - AluSc SINE Alu -14 295 1 1986 119 7 3 chr6 5129714 5130000 -184149554 + AluSq SINE Alu 1 287 -26 2842 10 0 0 chr6 5130043 5130349 -184149205 - AluYb8 SINE Alu -12 306 1 23 54 0 0 chr6 5130987 5131024 -184148530 + AT_rich Low_complexity Low_complexity 1 37 0 2058 162 40 0 chr6 5131317 5131668 -184147886 + MER47A DNA MER2_type 2 366 0 216 0 0 0 chr6 5132366 5132390 -184147164 + (A)n Simple_repeat Simple_repeat 1 24 0 459 0 0 0 chr6 5132390 5132441 -184147113 + (TA)n Simple_repeat Simple_repeat 1 51 0 201 289 84 12 chr6 5132677 5132760 -184146794 - L2 LINE L2 -38 3275 3187 284 333 81 43 chr6 5133344 5133554 -184146000 - L2 LINE L2 -212 3060 2843 186 313 70 26 chr6 5133643 5133758 -184145796 + MIR SINE MIR 15 134 -128 248 333 61 12 chr6 5134074 5134239 -184145315 - L2 LINE L2 -1015 2299 2127 201 318 34 62 chr6 5135463 5135642 -184143912 + L2 LINE L2 2477 2650 -664 365 288 70 109 chr6 5135885 5136198 -184143356 + L2 LINE L2 2967 3267 -5 31 82 0 0 chr6 5137443 5137516 -184142038 + AT_rich Low_complexity Low_complexity 1 73 0 2924 113 57 2 chr6 5138612 5139018 -184140536 - MSTA LTR MaLR 0 428 1 286 259 82 0 chr6 5139554 5139639 -184139915 + MIR SINE MIR 32 123 -85 255 261 85 54 chr6 5139706 5139836 -184139718 + L2 LINE L2 2862 2995 -318 274 298 145 21 chr6 5140029 5140264 -184139290 + MLT1J LTR MaLR 242 505 -6 8844 103 52 2 chr6 5140586 5141810 -184137744 + HSMAR1 DNA Mariner 1 1285 -2 188 219 146 0 chr6 5141815 5141856 -184137698 - L2 LINE L2 -42 3230 3184 1445 208 153 2 chr6 5142463 5142887 -184136667 + Charlie1b DNA MER1_type 34 521 -2 733 184 247 0 chr6 5142988 5143162 -184136392 - MER20 DNA MER1_type -1 218 2 282 290 0 0 chr6 5143230 5143292 -184136262 - MIR SINE MIR -12 250 189 348 215 0 0 chr6 5143309 5143374 -184136180 + MER20 DNA MER1_type 154 218 -1 2461 96 0 0 chr6 5143484 5143797 -184135757 + AluSq SINE Alu 1 313 0 299 100 0 0 chr6 5143811 5143851 -184135703 - Charlie1 DNA MER1_type -2 2759 2720 322 217 126 51 chr6 5143852 5144010 -184135544 - MIR3 SINE MIR -61 147 1 * 420 317 108 67 chr6 5144010 5144609 -184134945 + L2 LINE L2 2304 2929 -385 2304 106 59 12 chr6 5144799 5145121 -184134433 + MER1B DNA MER1_type 1 337 0 336 352 87 27 chr6 5145254 5145473 -184134081 - L2 LINE L2 -222 3050 2819 517 283 62 6 chr6 5145615 5145792 -184133762 + MIR SINE MIR 76 262 0 445 230 30 0 chr6 5146263 5146363 -184133191 - MIR3 SINE MIR -15 193 91 28 48 0 0 chr6 5147867 5147909 -184131645 + GC_rich Low_complexity Low_complexity 1 42 0 2407 84 0 3 chr6 5149547 5149855 -184129699 - AluSx SINE Alu -5 307 1 1961 119 0 110 chr6 5151207 5151543 -184128011 + AluJb SINE Alu 2 300 -2 186 181 153 83 chr6 5151616 5151688 -184127866 - MIR3 SINE MIR -13 195 119 536 111 0 0 chr6 5151757 5151838 -184127716 - AluSq SINE Alu 0 313 233 1096 90 0 7 chr6 5151838 5151983 -184127571 - AluSq SINE Alu -169 144 1 1340 221 34 37 chr6 5152081 5152375 -184127179 - AluJb SINE Alu -9 293 1 393 184 26 0 chr6 5153005 5153081 -184126473 + MADE1 DNA Mariner 1 78 -2 268 214 119 127 chr6 5153135 5153261 -184126293 + MER5B DNA MER1_type 54 178 0 183 231 22 110 chr6 5153631 5153662 -184125892 - MIR SINE MIR -111 151 119 917 143 0 15 chr6 5153662 5153795 -184125759 + FLAM_C SINE Alu 3 133 0 183 231 22 110 chr6 5153795 5153854 -184125700 - MIR SINE MIR -143 119 69 2272 86 7 13 chr6 5154745 5155047 -184124507 + AluY SINE Alu 1 300 -11 8208 33 1 2 chr6 5155047 5156224 -184123330 - L1PA5 LINE L1 -569 5586 4409 4455 47 58 0 chr6 5156224 5156747 -184122807 + L1PA5 LINE L1 5585 6152 -2 328 301 164 35 chr6 5157941 5158267 -184121287 + L2 LINE L2 2717 3096 -176 362 333 98 50 chr6 5158302 5158719 -184120835 - MLT1K LTR MaLR -23 565 129 199 319 35 64 chr6 5158772 5158837 -184120717 + L2 LINE L2 3161 3226 -87 2144 76 0 0 chr6 5158837 5159099 -184120455 - AluSg SINE Alu -10 300 39 199 319 35 64 chr6 5159099 5159174 -184120380 + L2 LINE L2 3226 3297 -16 925 186 164 9 chr6 5159232 5159452 -184120102 + Tigger7 DNA MER2_type 8 261 -472 530 104 7 153 chr6 5159479 5159623 -184119931 + Tigger7 DNA MER2_type 2211 2333 -154 5997 151 37 16 chr6 5159801 5161222 -184118332 - L1MA4 LINE L1 -2 6298 4843 1053 149 24 53 chr6 5161222 5161430 -184118124 + Tigger7 DNA MER2_type 2286 2487 0 649 241 195 67 chr6 5161461 5161985 -184117569 + MLT1L LTR MaLR 3 593 -22 1843 137 7 28 chr6 5161995 5162280 -184117274 - AluJo SINE Alu -20 292 14 475 216 171 0 chr6 5162735 5162846 -184116708 + L2 LINE L2 3143 3272 0 575 241 15 30 chr6 5163648 5163781 -184115773 + MER94 DNA DNA 4 134 0 180 278 98 75 chr6 5165421 5165554 -184114000 + MIR SINE MIR 50 185 -77 2320 97 7 0 chr6 5166372 5166681 -184112873 + AluY SINE Alu 1 311 0 239 211 19 0 chr6 5166826 5166878 -184112676 + (TA)n Simple_repeat Simple_repeat 2 54 0 1644 198 92 24 chr6 5166893 5167272 -184112282 - MLT2B1 LTR ERVL -115 405 1 191 359 162 7 chr6 5167828 5167970 -184111584 + L2 LINE L2 2898 3061 -252 25 31 0 0 chr6 5168220 5168252 -184111302 + AT_rich Low_complexity Low_complexity 1 32 0 1332 124 14 18 chr6 5168718 5168935 -184110619 - L1MB3 LINE L1 -2 6181 5966 2078 124 0 45 chr6 5170231 5170377 -184109177 + AluSx SINE Alu 1 127 -185 2239 117 0 3 chr6 5170377 5170676 -184108878 + AluSp SINE Alu 11 308 -5 2078 124 0 45 chr6 5170676 5170843 -184108711 + AluSx SINE Alu 127 300 -12 857 274 115 32 chr6 5171083 5171517 -184108037 - L1MB3 LINE L1 -2032 5776 5307 1827 163 14 0 chr6 5173541 5173835 -184105719 - AluJb SINE Alu -14 298 1 365 241 111 19 chr6 5175883 5175991 -184103563 - L2 LINE L2 -3 3310 3193 4452 97 45 34 chr6 5176580 5177207 -184102347 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr6 5177297 5177326 -184102228 + AT_rich Low_complexity Low_complexity 1 29 0 1720 167 14 10 chr6 5178003 5178296 -184101258 - AluJb SINE Alu -18 294 1 780 211 83 6 chr6 5178897 5179053 -184100501 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5179537 5180603 -184098951 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5181264 5181287 -184098267 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5181618 5182139 -184097415 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5182144 5182369 -184097185 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5183250 5183348 -184096206 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5183358 5183406 -184096148 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5183406 5183717 -184095837 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5183717 5184347 -184095207 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5184349 5184466 -184095088 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5184642 5184948 -184094606 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5184956 5184983 -184094571 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5185810 5185989 -184093565 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5186062 5186169 -184093385 + AluSg/x SINE Alu 204 310 0 1800 84 0 16 chr6 5186862 5187111 -184092443 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5187114 5187220 -184092334 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5187938 5188293 -184091261 - AluJo SINE Alu -3 309 1 1050 158 0 0 chr6 5188584 5188742 -184090812 + FRAM SINE Alu 4 161 -15 483 18 0 0 chr6 5189068 5189124 -184090430 + (CA)n Simple_repeat Simple_repeat 1 56 0 239 232 171 0 chr6 5189537 5189619 -184089935 - MER5A DNA MER1_type -77 112 17 834 203 68 5 chr6 5189775 5189967 -184089587 - MIR SINE MIR -26 236 33 521 289 114 9 chr6 5190233 5190444 -184089110 - MIR SINE MIR -4 258 26 918 279 41 16 chr6 5191518 5191837 -184087717 - L1ME4a LINE L1 -259 5862 5536 447 158 12 12 chr6 5192365 5192447 -184087107 + MER117 DNA MER1_type 55 136 -61 339 280 88 40 chr6 5192853 5192978 -184086576 - MIR SINE MIR -58 150 20 259 345 236 3 chr6 5195415 5195716 -184083838 - L2 LINE L2 -318 2954 2586 406 217 61 20 chr6 5195723 5195927 -184083627 - MER5C DNA MER1_type -2 322 52 1988 190 40 3 chr6 5196029 5196381 -184083173 - MLT1A1 LTR MaLR 0 365 1 197 394 10 20 chr6 5196387 5196486 -184083068 - L2 LINE L2 -38 3234 3137 * 253 326 0 10 chr6 5196482 5196580 -184082974 - L2 LINE L2 -756 2558 2462 825 280 73 103 chr6 5196876 5197818 -184081736 + L1MC4a LINE L1 4390 5303 -843 281 248 132 16 chr6 5197853 5197982 -184081572 + L1MC4a LINE L1 5333 5476 -2332 213 262 139 66 chr6 5198026 5198148 -184081406 + L2 LINE L2 3183 3313 0 712 322 47 13 chr6 5198197 5198514 -184081040 + L1MC4a LINE L1 5566 5893 -1915 22 35 0 0 chr6 5199523 5199552 -184080002 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 14 0 chr6 5200019 5200092 -184079462 - L2 LINE L2 -25 3247 3174 228 67 0 0 chr6 5200293 5200323 -184079231 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 438 217 30 136 chr6 5201060 5201120 -184078434 - MER5B DNA MER1_type -1 177 112 306 0 0 0 chr6 5201120 5201154 -184078400 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 438 217 30 136 chr6 5201154 5201291 -184078263 - MER5B DNA MER1_type -66 112 1 437 313 108 35 chr6 5201291 5201606 -184077948 - L2 LINE L2 -495 2819 2482 378 61 0 0 chr6 5202993 5203042 -184076512 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2907 221 129 53 chr6 5203672 5204712 -184074842 + L1MCb LINE L1 3 1121 -4924 2156 165 50 81 chr6 5204727 5204775 -184074779 - LTR58 LTR ERV1 -2 677 629 1834 173 3 3 chr6 5204775 5205076 -184074478 + AluJb SINE Alu 1 301 -11 2156 165 50 81 chr6 5205076 5205355 -184074199 - LTR58 LTR ERV1 -50 629 343 2344 81 0 37 chr6 5205355 5205677 -184073877 + AluSg SINE Alu 1 310 0 2156 165 50 81 chr6 5205677 5205795 -184073759 - LTR58 LTR ERV1 -336 343 248 1709 116 455 40 chr6 5205795 5206243 -184073311 - MER51A LTR ERV1 0 634 1 2156 165 50 81 chr6 5206243 5206339 -184073215 - LTR58 LTR ERV1 -431 248 151 4387 147 14 1 chr6 5206340 5207042 -184072512 + MER50 LTR ERV1 1 711 -23 394 147 44 0 chr6 5207048 5207116 -184072438 - LTR58 LTR ERV1 -534 145 75 804 186 14 54 chr6 5207118 5207349 -184072205 + MST-int LTR MaLR 382 667 -704 1251 213 20 20 chr6 5207989 5208242 -184071312 - MLT1A1 LTR MaLR -4 361 109 219 287 69 23 chr6 5209299 5209386 -184070168 - L2 LINE L2 -1 3271 3181 272 226 118 29 chr6 5209446 5209548 -184070006 + L1ME LINE L1 5726 5836 -285 3061 132 40 6 chr6 5211022 5211492 -184068062 + LTR19A LTR ERV1 1 486 0 207 0 0 0 chr6 5211720 5211743 -184067811 + (T)n Simple_repeat Simple_repeat 1 23 0 258 275 141 34 chr6 5213100 5213408 -184066146 + L1MC/D LINE L1 5328 5660 -461 2769 102 8 6 chr6 5214633 5214996 -184064558 + THE1B LTR MaLR 1 364 0 198 245 142 38 chr6 5215737 5215843 -184063711 + MIR SINE MIR 20 136 -72 1744 272 139 25 chr6 5216712 5217418 -184062136 - MER21B LTR ERV1 -57 806 21 21 36 0 0 chr6 5217508 5217536 -184062018 + AT_rich Low_complexity Low_complexity 1 28 0 1755 184 3 0 chr6 5218100 5218399 -184061155 + AluJb SINE Alu 1 300 -12 541 272 29 59 chr6 5219219 5219458 -184060096 - MIR SINE MIR -12 250 19 806 279 71 16 chr6 5221515 5221837 -184057717 + L1MC4a LINE L1 5502 5841 -1967 23 0 0 0 chr6 5223757 5223780 -184055774 + AT_rich Low_complexity Low_complexity 1 23 0 1853 44 48 24 chr6 5223780 5224030 -184055524 - L1MA1 LINE L1 0 6302 6047 325 307 90 33 chr6 5224077 5224409 -184055145 - L1M4 LINE L1 -914 5232 4882 293 138 0 17 chr6 5224422 5224480 -184055074 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1537 209 93 34 chr6 5226627 5226707 -184052847 - MER95 LTR ERV 0 431 357 1743 168 7 26 chr6 5226707 5227011 -184052543 - AluJo SINE Alu -14 298 1 1537 209 93 34 chr6 5227011 5227337 -184052217 - MER95 LTR ERV -74 357 1 2230 60 0 8 chr6 5228142 5228410 -184051144 + AluSg SINE Alu 1 266 -44 432 0 0 0 chr6 5228465 5228513 -184051041 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr6 5228513 5228534 -184051020 + (T)n Simple_repeat Simple_repeat 1 21 0 2218 132 0 0 chr6 5228784 5229095 -184050459 - AluSx SINE Alu -1 311 1 250 303 45 0 chr6 5229282 5229371 -184050183 - MIR3 SINE MIR -6 202 110 656 271 105 32 chr6 5229408 5229685 -184049869 + Tigger8 DNA MER2_type 8 304 -362 2302 84 3 0 chr6 5229767 5230054 -184049500 + AluSp SINE Alu 21 308 -5 2199 99 0 0 chr6 5230477 5230788 -184048766 - AluSq SINE Alu 0 311 1 2142 143 0 10 chr6 5232054 5232368 -184047186 - AluSx SINE Alu -1 311 1 302 264 23 23 chr6 5233377 5233464 -184046090 + MIR3 SINE MIR 98 184 -24 265 265 43 8 chr6 5233873 5233990 -184045564 - L1MC4 LINE L1 -1 8041 7921 2225 217 79 72 chr6 5234126 5234188 -184045366 - L1ME2 LINE L1 0 6164 6104 2099 129 0 7 chr6 5234188 5234490 -184045064 - AluSx SINE Alu -12 300 1 2225 217 79 72 chr6 5234490 5234781 -184044773 - L1ME2 LINE L1 -60 6104 5817 186 43 0 0 chr6 5234781 5234804 -184044750 + (TG)n Simple_repeat Simple_repeat 2 24 0 2225 217 79 72 chr6 5234804 5235639 -184043915 - L1ME2 LINE L1 -347 5817 4959 212 57 0 29 chr6 5235758 5235793 -184043761 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 202 337 0 12 chr6 5235810 5235893 -184043661 - L2 LINE L2 -67 3246 3165 2395 227 38 24 chr6 5235971 5236716 -184042838 + L1M4 LINE L1 3850 4604 -1542 259 243 0 0 chr6 5236730 5236800 -184042754 + Charlie1 DNA MER1_type 1569 1638 -1123 1939 175 72 30 chr6 5236843 5237340 -184042214 - L1MC3 LINE L1 -86 7699 7182 1072 143 0 34 chr6 5237409 5237584 -184041970 - AluJo SINE Alu -143 169 1 951 282 33 3 chr6 5237604 5237966 -184041588 + L1M4 LINE L1 4631 5003 -1143 784 163 0 7 chr6 5237994 5238147 -184041407 + L1MD1 LINE L1 6089 6240 -2 1416 114 35 26 chr6 5239300 5239528 -184040026 - MER30 DNA MER1_type 0 230 1 218 320 72 39 chr6 5239774 5239955 -184039599 + MIR3 SINE MIR 15 201 -7 200 167 21 0 chr6 5239994 5240042 -184039512 + CT-rich Low_complexity Low_complexity 4 52 0 4974 153 57 24 chr6 5240056 5241117 -184038437 - L1MA6 LINE L1 0 6300 5205 2555 57 0 0 chr6 5241788 5242089 -184037465 - AluY SINE Alu -10 301 1 652 264 56 0 chr6 5242095 5242273 -184037281 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chr6 5242281 5242320 -184037234 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 5242363 5242390 -184037164 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 54 7 chr6 5242639 5242933 -184036621 - AluSg SINE Alu -2 308 1 255 103 0 0 chr6 5242978 5243017 -184036537 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 196 42 24 chr6 5243150 5243443 -184036111 - MER82 DNA MER2_type -12 641 355 1988 128 0 7 chr6 5243443 5243725 -184035829 + AluSx SINE Alu 1 280 -32 279 39 20 39 chr6 5243729 5243780 -184035774 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2833 196 42 24 chr6 5243780 5244104 -184035450 - MER82 DNA MER2_type -300 353 8 184 286 0 0 chr6 5245027 5245069 -184034485 + MIR SINE MIR 35 76 -186 23 0 0 0 chr6 5245462 5245485 -184034069 + AT_rich Low_complexity Low_complexity 1 23 0 2187 116 0 3 chr6 5246307 5246617 -184032937 - AluSx SINE Alu -3 309 1 185 62 0 31 chr6 5247553 5247585 -184031969 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 203 333 33 17 chr6 5247654 5247714 -184031840 - L2 LINE L2 -93 3179 3119 1306 220 114 22 chr6 5248273 5248824 -184030730 - L1ME4a LINE L1 -7 6114 5513 204 313 67 47 chr6 5249490 5249640 -184029914 - MIR SINE MIR -1 261 109 3311 121 25 36 chr6 5249649 5250191 -184029363 - L1MA8 LINE L1 -426 5865 5328 2456 84 0 0 chr6 5250191 5250502 -184029052 - AluY SINE Alu 0 311 1 3311 121 25 36 chr6 5250502 5250650 -184028904 - L1MA8 LINE L1 -963 5328 5180 186 373 35 38 chr6 5250993 5251307 -184028247 + L2 LINE L2 2043 2355 -959 405 319 24 24 chr6 5251514 5251680 -184027874 - MIR SINE MIR -94 168 3 590 282 35 0 chr6 5251849 5252023 -184027531 - MER58A DNA MER1_type 0 224 45 1839 136 3 69 chr6 5252027 5252359 -184027195 + AluJb SINE Alu 1 310 -2 202 146 0 24 chr6 5252440 5252481 -184027073 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1829 136 6 73 chr6 5252594 5252924 -184026630 - AluJo SINE Alu 0 312 5 2213 129 90 5 chr6 5252936 5253347 -184026207 - Tigger2 DNA MER2_type 0 2718 2273 362 197 15 0 chr6 5253338 5253404 -184026150 - Tigger2 DNA MER2_type -2650 68 2 * 302 351 27 0 chr6 5253445 5253556 -184025998 + MIR SINE MIR 77 190 -72 403 298 31 43 chr6 5258199 5258379 -184021175 - MIR3 SINE MIR -64 144 12 276 291 157 13 chr6 5259105 5259487 -184020067 + L1ME3A LINE L1 2113 2549 -3597 23 0 0 0 chr6 5259570 5259593 -184019961 + AT_rich Low_complexity Low_complexity 1 23 0 265 308 0 0 chr6 5259599 5259677 -184019877 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 329 272 52 60 chr6 5259758 5259990 -184019564 + L1ME3A LINE L1 2745 2974 -3172 304 255 75 9 chr6 5260644 5260750 -184018804 + L1MC5 LINE L1 7249 7361 -600 730 219 122 48 chr6 5261089 5261523 -184018031 + L1MC5 LINE L1 7452 7917 -44 334 254 154 86 chr6 5261736 5262016 -184017538 + L1ME3A LINE L1 3475 3773 -2373 1151 274 52 50 chr6 5262056 5262849 -184016705 + L1ME3A LINE L1 3860 4653 -1493 383 299 95 33 chr6 5262991 5263333 -184016221 + L1ME3A LINE L1 4878 5231 -915 383 307 102 0 chr6 5263537 5263752 -184015802 + L1ME3A LINE L1 5354 5590 -572 316 303 28 0 chr6 5263814 5263956 -184015598 + L1ME3A LINE L1 5740 5885 -285 226 259 0 0 chr6 5264271 5264325 -184015229 + Charlie1 DNA MER1_type 2708 2761 0 22 0 0 0 chr6 5264802 5264824 -184014730 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 5265244 5265284 -184014270 + AT_rich Low_complexity Low_complexity 1 40 0 410 233 44 107 chr6 5266611 5266817 -184012737 - LTR41 LTR ERVL -5 768 576 629 171 39 0 chr6 5267077 5267206 -184012348 - LTR41 LTR ERVL -598 175 42 2207 72 11 0 chr6 5268244 5268577 -184010977 - AluY SINE Alu 0 336 1 456 19 0 0 chr6 5268651 5268704 -184010850 + (CA)n Simple_repeat Simple_repeat 2 54 0 1215 219 22 52 chr6 5270007 5270419 -184009135 - MLT2B1 LTR ERVL 0 414 1 294 326 23 38 chr6 5270714 5270846 -184008708 + MIR SINE MIR 20 149 -113 2338 99 0 16 chr6 5272693 5273007 -184006547 - AluSc SINE Alu 0 309 1 669 182 21 3 chr6 5273852 5274010 -184005544 - L1 LINE L1 -1031 5115 4959 705 89 27 9 chr6 5274043 5274155 -184005399 + L1MA5 LINE L1 6187 6300 0 2021 157 0 0 chr6 5274313 5274606 -184004948 + AluSx SINE Alu 1 293 -19 1688 224 93 28 chr6 5275006 5275072 -184004482 - L1ME LINE L1 -686 5549 5489 2354 108 0 6 chr6 5275072 5275386 -184004168 - AluSx SINE Alu 0 312 1 1688 224 93 28 chr6 5275386 5275481 -184004073 - L1ME LINE L1 -746 5489 5402 1662 180 30 3 chr6 5275481 5275776 -184003778 - AluJb SINE Alu -9 303 1 1688 224 93 28 chr6 5275776 5276394 -184003160 - L1ME LINE L1 -833 5402 4726 992 213 122 26 chr6 5276377 5276762 -184002792 - L1ME LINE L1 -4123 2273 1852 * 235 306 62 0 chr6 5277097 5277158 -184002396 + L1MEc LINE L1 35 91 -6305 216 0 0 0 chr6 5277158 5277182 -184002372 + (TAA)n Simple_repeat Simple_repeat 1 24 0 235 306 62 0 chr6 5277182 5277264 -184002290 + L1MEc LINE L1 91 187 -6209 2746 238 81 17 chr6 5277267 5278387 -184001167 + L1MEc LINE L1 256 1447 -4949 235 298 59 121 chr6 5278763 5279135 -184000419 + L2 LINE L2 1356 1704 -1610 615 349 96 41 chr6 5279211 5279993 -183999561 + L2 LINE L2 2060 2884 -430 3604 96 0 2 chr6 5280711 5281213 -183998341 + THE1B-int LTR MaLR 1080 1580 0 2061 116 101 18 chr6 5281213 5281549 -183998005 + THE1B LTR MaLR 1 364 0 1797 196 59 50 chr6 5282361 5282917 -183996637 + L1ME1 LINE L1 5606 6166 0 708 221 145 25 chr6 5284720 5284996 -183994558 - LTR16A LTR ERVL -78 372 64 261 0 0 0 chr6 5285855 5285884 -183993670 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1017 146 0 13 chr6 5285887 5286045 -183993509 - AluJo SINE Alu -30 282 127 407 322 66 0 chr6 5286152 5286304 -183993250 + MIR SINE MIR 24 185 -77 7826 106 8 0 chr6 5286698 5287752 -183991802 - THE1B-int LTR MaLR -517 1063 1 2246 108 108 21 chr6 5287752 5288087 -183991467 - THE1B LTR MaLR 0 364 1 378 283 53 84 chr6 5288299 5288525 -183991029 + MIR SINE MIR 39 257 -5 560 315 91 17 chr6 5288614 5288846 -183990708 - MIR SINE MIR 0 262 14 683 289 21 26 chr6 5290005 5290391 -183989163 + L1MC4a LINE L1 5534 5982 -1826 300 280 17 25 chr6 5291664 5291782 -183987772 - MIR SINE MIR -99 163 47 484 115 0 0 chr6 5292066 5292127 -183987427 - AluS SINE Alu -247 62 2 708 299 86 30 chr6 5292385 5292860 -183986694 - L1ME3A LINE L1 -230 5940 5439 867 171 35 29 chr6 5292860 5293030 -183986524 + AluJb SINE Alu 135 305 -7 21 36 0 0 chr6 5293097 5293125 -183986429 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 35 21 chr6 5293130 5293274 -183986280 - L1ME3A LINE L1 -813 5333 5188 463 251 135 65 chr6 5294262 5294665 -183984889 + MLT1H LTR MaLR 30 547 -2 348 24 0 0 chr6 5294999 5295040 -183984514 + (TG)n Simple_repeat Simple_repeat 1 41 0 2411 95 0 0 chr6 5295093 5295399 -183984155 + AluSg SINE Alu 1 306 -4 198 0 0 0 chr6 5295399 5295421 -183984133 + (GA)n Simple_repeat Simple_repeat 2 23 0 574 192 0 10 chr6 5295481 5295585 -183983969 + L2 LINE L2 3189 3291 -22 504 235 90 36 chr6 5295773 5295939 -183983615 + MIR3 SINE MIR 11 185 -23 226 288 137 0 chr6 5296520 5296659 -183982895 + MER103 DNA DNA 7 164 -2 2432 69 0 13 chr6 5296824 5297129 -183982425 + AluY SINE Alu 1 301 -10 182 371 96 20 chr6 5297422 5297619 -183981935 - L2 LINE L2 -93 3179 2968 462 248 0 9 chr6 5297636 5297749 -183981805 - L1MA9 LINE L1 -38 6274 6163 191 360 126 18 chr6 5297975 5298197 -183981357 - L2 LINE L2 -562 2752 2507 340 250 0 0 chr6 5298552 5298616 -183980938 + MER8 DNA MER2_type 150 213 -26 443 338 87 51 chr6 5298684 5299152 -183980402 - L2 LINE L2 -55 3217 2725 1126 226 110 18 chr6 5299288 5299678 -183979876 - L1MC4a LINE L1 -1804 6004 5579 262 340 172 0 chr6 5299718 5299956 -183979598 - L2 LINE L2 -812 2502 2224 2342 102 0 13 chr6 5299973 5300288 -183979266 + AluSx SINE Alu 1 311 -1 202 135 27 0 chr6 5300474 5300511 -183979043 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1430 157 0 25 chr6 5300538 5300780 -183978774 - MER46A DNA MER2_type 0 236 1 1557 183 8 0 chr6 5300803 5301038 -183978516 + MER8 DNA MER2_type 3 239 0 933 231 74 26 chr6 5301297 5301608 -183977946 - MER58B DNA MER1_type -8 333 8 184 174 65 0 chr6 5301616 5301662 -183977892 - L2 LINE L2 -310 2962 2914 250 350 60 0 chr6 5303458 5303558 -183975996 + L2 LINE L2 3201 3306 -7 2182 92 0 24 chr6 5305235 5305550 -183974004 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5305831 5306013 -183973541 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5306616 5306777 -183972777 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5306841 5307147 -183972407 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5307147 5307253 -183972301 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5307358 5307655 -183971899 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5308304 5308398 -183971156 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5310608 5311234 -183968320 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5311282 5311443 -183968111 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5311701 5311791 -183967763 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5311873 5311910 -183967644 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5311950 5312246 -183967308 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5312343 5312472 -183967082 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5312472 5312534 -183967020 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5312534 5313844 -183965710 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5313844 5314009 -183965545 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5314009 5314256 -183965298 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5314240 5314349 -183965205 - HAL1 LINE L1 -1043 1464 1354 * 196 204 0 45 chr6 5315007 5315051 -183964503 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5315694 5315717 -183963837 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 290 341 112 18 chr6 5315794 5316017 -183963537 + L3b LINE CR1 1272 1515 -68 311 314 108 10 chr6 5317299 5317401 -183962153 + L2 LINE L2 3138 3249 -23 236 234 125 16 chr6 5317587 5317715 -183961839 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5318094 5318134 -183961420 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 363 240 10 48 chr6 5318632 5318736 -183960818 + MIR3 SINE MIR 109 208 0 252 159 0 0 chr6 5318938 5318982 -183960572 - L3 LINE CR1 -8 1569 1526 * 259 178 0 0 chr6 5318943 5318988 -183960566 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5319260 5319286 -183960268 + (A)n Simple_repeat Simple_repeat 1 26 0 657 340 31 12 chr6 5320721 5320977 -183958577 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5320980 5321001 -183958553 + AT_rich Low_complexity Low_complexity 1 21 0 1385 159 0 5 chr6 5321061 5321359 -183958195 - MER2 DNA MER2_type 0 345 2 209 265 0 0 chr6 5323326 5323375 -183956179 + GA-rich Low_complexity Low_complexity 5 53 0 2551 70 0 3 chr6 5324151 5324463 -183955091 + AluY SINE Alu 1 311 0 202 239 0 0 chr6 5325138 5325184 -183954370 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2089 154 14 61 chr6 5325298 5325570 -183953984 - MER7A DNA MER2_type -2692 346 96 2204 97 10 0 chr6 5325570 5325859 -183953695 - AluSg SINE Alu -13 297 6 2089 154 14 61 chr6 5325859 5325949 -183953605 - MER7A DNA MER2_type -2942 96 3 292 311 185 12 chr6 5326411 5326702 -183952852 + L2 LINE L2 2712 3037 -276 343 197 94 60 chr6 5326869 5326986 -183952568 + MLT1L LTR MaLR 147 267 -348 330 236 85 9 chr6 5327123 5327229 -183952325 + MLT1L LTR MaLR 498 611 -4 544 273 42 42 chr6 5327234 5327450 -183952104 + L2 LINE L2 3098 3313 0 204 234 0 0 chr6 5327450 5327497 -183952057 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 677 222 74 39 chr6 5328436 5328639 -183950915 + MIR SINE MIR 5 214 -48 1917 134 0 3 chr6 5328643 5328956 -183950598 + AluJo SINE Alu 1 312 0 312 273 79 52 chr6 5329280 5329464 -183950090 - MIR SINE MIR -64 198 11 1229 289 150 6 chr6 5330878 5331365 -183948189 + L3 LINE CR1 527 1083 -494 314 215 116 70 chr6 5333078 5333250 -183946304 + MER104 DNA Tc2 1 180 0 320 306 88 69 chr6 5333453 5333714 -183945840 - L2 LINE L2 -22 3250 2985 253 151 0 38 chr6 5333983 5334036 -183945518 + LTR16C LTR ERVL 185 235 -256 354 267 68 25 chr6 5334096 5334257 -183945297 + LTR16C LTR ERVL 320 487 -4 1707 171 44 0 chr6 5334303 5334616 -183944938 + AluSx SINE Alu 1 288 -24 850 149 0 27 chr6 5334894 5335042 -183944512 + FRAM SINE Alu 32 175 -1 902 178 86 25 chr6 5335288 5335485 -183944069 + MER3 DNA MER1_type 1 209 0 241 277 108 0 chr6 5336125 5336208 -183943346 + MIR SINE MIR 115 206 -56 728 238 109 5 chr6 5336469 5336662 -183942892 - MER58C DNA MER1_type -2 213 1 749 257 30 0 chr6 5336670 5336872 -183942682 - MER3 DNA MER1_type -1 208 1 505 273 120 19 chr6 5336872 5337072 -183942482 + MIR SINE MIR 37 260 -2 28 0 0 0 chr6 5337122 5337150 -183942404 + AT_rich Low_complexity Low_complexity 1 28 0 482 295 29 70 chr6 5338316 5338560 -183940994 - MIR SINE MIR -8 254 21 192 285 131 22 chr6 5338572 5338709 -183940845 + MIR3 SINE MIR 50 201 -7 240 250 53 13 chr6 5339517 5339593 -183939961 - L2 LINE L2 -921 2393 2315 803 240 6 95 chr6 5339804 5340078 -183939476 - L2 LINE L2 -4 3309 3065 2053 144 0 0 chr6 5340078 5340376 -183939178 + AluSx SINE Alu 1 298 -14 803 240 6 95 chr6 5340376 5340418 -183939136 - L2 LINE L2 -248 3065 3021 2305 260 28 5 chr6 5340805 5341417 -183938137 - L1ME1 LINE L1 -2 6164 5539 1964 227 40 62 chr6 5341417 5341963 -183937591 + MLT1F LTR MaLR 9 542 0 815 236 29 12 chr6 5341965 5342206 -183937348 - L1ME1 LINE L1 -635 5529 5285 292 243 43 14 chr6 5343453 5343523 -183936031 - L2 LINE L2 -6 3307 3236 251 324 14 0 chr6 5343560 5343634 -183935920 - L2 LINE L2 -8 3305 3231 1212 115 0 0 chr6 5343980 5344145 -183935409 + AluSq SINE Alu 148 312 -1 565 296 17 48 chr6 5344458 5344688 -183934866 + MIR SINE MIR 30 252 -10 195 42 0 0 chr6 5345022 5345046 -183934508 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 152 19 14 chr6 5347364 5347726 -183931828 - MLT1B LTR MaLR 0 390 27 718 217 0 8 chr6 5347760 5347889 -183931665 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr6 5348645 5348681 -183930873 + AT_rich Low_complexity Low_complexity 1 36 0 321 286 125 0 chr6 5349375 5349487 -183930067 + L2 LINE L2 3139 3264 -8 1766 83 0 0 chr6 5349810 5350027 -183929527 - AluSg/x SINE Alu -18 294 78 362 293 73 20 chr6 5350363 5350513 -183929041 + MIR3 SINE MIR 39 196 -12 204 97 0 0 chr6 5351083 5351114 -183928440 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 231 163 23 23 chr6 5351538 5351581 -183927973 + MIR SINE MIR 15 57 -205 342 0 0 0 chr6 5351840 5351878 -183927676 + (GA)n Simple_repeat Simple_repeat 1 38 0 204 262 87 58 chr6 5352146 5352249 -183927305 + MIR SINE MIR 139 244 -18 2073 114 7 0 chr6 5352383 5352701 -183926853 - AluSx SINE Alu 0 320 1 49 52 0 0 chr6 5354066 5354143 -183925411 + AT_rich Low_complexity Low_complexity 1 77 0 927 231 126 0 chr6 5354143 5354280 -183925274 + L1MA9 LINE L1 6000 6118 -194 297 0 0 0 chr6 5354280 5354313 -183925241 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 5354312 5354341 -183925213 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 927 231 126 0 chr6 5354313 5354450 -183925104 + L1MA9 LINE L1 6118 6277 -35 35 0 0 0 chr6 5354455 5354490 -183925064 + AT_rich Low_complexity Low_complexity 1 35 0 1987 228 56 22 chr6 5354861 5355488 -183924066 - MER114 LTR ERV 0 648 1 707 188 160 14 chr6 5355730 5355874 -183923680 - AluJb SINE Alu -12 300 136 352 250 0 0 chr6 5356002 5356074 -183923480 - MER94 DNA DNA -62 72 1 1268 63 0 2 chr6 5356374 5356565 -183922989 - MER11C LTR ERVK -790 281 1 22 56 0 0 chr6 5356765 5356801 -183922753 + AT_rich Low_complexity Low_complexity 1 36 0 701 203 26 46 chr6 5359829 5359982 -183919572 - MER58B DNA MER1_type -1 340 191 773 350 52 11 chr6 5362639 5363005 -183916549 - L3 LINE CR1 -823 754 374 406 248 80 16 chr6 5363020 5363145 -183916409 - MLT1K LTR MaLR -2 586 454 255 213 13 93 chr6 5363146 5363221 -183916333 - MIR SINE MIR -120 88 20 246 326 12 0 chr6 5363489 5363575 -183915979 - L2 LINE L2 0 3272 3186 195 224 45 60 chr6 5363647 5363714 -183915840 - L2 LINE L2 0 3313 3248 206 336 128 38 chr6 5363852 5364197 -183915357 - L2 LINE L2 -557 2757 2382 * 305 216 99 27 chr6 5364169 5364280 -183915274 + L2 LINE L2 3150 3268 -4 180 0 0 0 chr6 5364995 5365015 -183914539 + (TA)n Simple_repeat Simple_repeat 2 21 0 1402 159 18 57 chr6 5365675 5365958 -183913596 - AluJb SINE Alu -17 295 24 2159 147 0 0 chr6 5366322 5366634 -183912920 - AluSx SINE Alu 0 312 1 518 278 67 66 chr6 5366869 5367203 -183912351 - MLT1I LTR MaLR -7 443 71 201 320 102 61 chr6 5367389 5367586 -183911968 + MIR3 SINE MIR 4 208 0 529 154 83 0 chr6 5368127 5368232 -183911322 + MER33 DNA MER1_type 1 103 -97 2099 103 3 10 chr6 5368239 5368531 -183911023 + AluSx SINE Alu 6 295 -17 812 151 49 27 chr6 5368559 5368744 -183910810 + MER33 DNA MER1_type 133 321 -42 22 0 0 0 chr6 5369667 5369689 -183909865 + AT_rich Low_complexity Low_complexity 1 22 0 266 294 95 87 chr6 5370165 5370396 -183909158 - L2 LINE L2 -1395 1919 1687 26 0 0 0 chr6 5370619 5370645 -183908909 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 5371108 5371138 -183908416 + AT_rich Low_complexity Low_complexity 1 30 0 245 298 75 11 chr6 5371514 5371608 -183907946 - L1MC/D LINE L1 -2268 5540 5441 29 0 0 0 chr6 5372008 5372037 -183907517 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 105 42 chr6 5372339 5372434 -183907120 + L2 LINE L2 3210 3310 -3 303 198 18 90 chr6 5372953 5373064 -183906490 - MLT1J2 LTR MaLR -2 448 346 248 237 22 74 chr6 5373153 5373288 -183906266 - MLT1J1 LTR MaLR -281 165 38 879 248 57 5 chr6 5375501 5375711 -183903843 - MIR SINE MIR -25 237 17 2201 132 7 0 chr6 5377512 5377822 -183901732 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 5379089 5379117 -183900437 + AT_rich Low_complexity Low_complexity 1 28 0 653 170 0 10 chr6 5379117 5379217 -183900337 - FLAM_A SINE Alu -26 116 18 248 294 0 15 chr6 5379430 5379498 -183900056 + MIR SINE MIR 18 84 -178 660 247 52 81 chr6 5379721 5379992 -183899562 + MLT1L LTR MaLR 240 598 -9 412 257 71 0 chr6 5379994 5380107 -183899447 + MIR SINE MIR 78 198 -64 2300 95 0 0 chr6 5380217 5380511 -183899043 - AluSc SINE Alu -15 294 1 956 253 179 38 chr6 5380631 5381023 -183898531 + MLT1H LTR MaLR 100 546 -3 1760 274 6 4 chr6 5381059 5381540 -183898014 + L1MC4 LINE L1 7413 7894 -148 259 205 21 6 chr6 5381548 5381890 -183897664 + (TA)n Simple_repeat Simple_repeat 1 347 0 333 322 39 71 chr6 5381891 5382146 -183897408 - MLT1L LTR MaLR -201 414 168 2127 109 0 3 chr6 5383375 5383689 -183895865 + AluSg SINE Alu 1 313 0 190 107 0 0 chr6 5383661 5383718 -183895836 + (TAA)n Simple_repeat Simple_repeat 1 57 0 548 313 53 40 chr6 5384396 5384696 -183894858 - L2 LINE L2 -14 3299 2996 268 305 11 21 chr6 5384916 5385011 -183894543 - MIR3 SINE MIR -9 199 106 2434 177 59 4 chr6 5385167 5385676 -183893878 - L1MB4 LINE L1 -2 6178 5642 345 208 0 0 chr6 5385704 5385781 -183893773 + (CA)n Simple_repeat Simple_repeat 2 78 0 2555 183 10 51 chr6 5385795 5386798 -183892756 - L1MB4 LINE L1 -542 5632 3794 719 211 83 6 chr6 5387319 5387475 -183892079 + FRAM SINE Alu 1 166 -10 1263 305 88 57 chr6 5387959 5389025 -183890529 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5389686 5389709 -183889845 + (CA)n Simple_repeat Simple_repeat 2 24 0 2646 161 81 13 chr6 5390040 5390561 -183888993 - MER21A LTR ERV1 0 931 376 845 147 187 13 chr6 5390566 5390791 -183888763 - MER21A LTR ERV1 -667 264 1 412 184 112 0 chr6 5391672 5391770 -183887784 - MIR SINE MIR -17 245 137 3822 152 9 16 chr6 5391780 5391828 -183887726 - L1MB3 LINE L1 -2 6181 6134 2571 68 0 0 chr6 5391828 5392139 -183887415 - AluY SINE Alu 0 311 1 3822 152 9 16 chr6 5392139 5392769 -183886785 - L1MB3 LINE L1 -49 6134 5508 245 197 197 51 chr6 5392771 5392888 -183886666 - MIR SINE MIR -97 165 32 2349 105 0 0 chr6 5393064 5393370 -183886184 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5393378 5393405 -183886149 + (CAA)n Simple_repeat Simple_repeat 2 28 0 633 274 0 11 chr6 5394232 5394411 -183885143 - MER5B DNA MER1_type 0 178 2 703 112 0 0 chr6 5394484 5394591 -183884963 + AluSg/x SINE Alu 204 310 0 1776 78 62 0 chr6 5395296 5395554 -183884000 - L1PA6 LINE L1 -63 6091 5818 395 171 102 0 chr6 5395554 5395642 -183883912 + MLT2B2 LTR ERVL 369 465 -50 1315 132 51 180 chr6 5396360 5396715 -183882839 - AluJo SINE Alu -3 309 1 2176 92 0 24 chr6 5398606 5398921 -183880633 - AluY SINE Alu 0 311 1 361 258 22 82 chr6 5399202 5399384 -183880170 + L2 LINE L2 3118 3288 -25 343 298 37 62 chr6 5399987 5400148 -183879406 + MIR3 SINE MIR 16 172 -36 1990 150 10 0 chr6 5400212 5400518 -183879036 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5400518 5400624 -183878930 - L2 LINE L2 -14 3299 3194 2244 94 7 3 chr6 5400729 5401026 -183878528 + AluSg SINE Alu 1 298 -12 250 272 61 26 chr6 5401655 5401769 -183877785 + L2 LINE L2 3145 3262 -10 773 289 61 61 chr6 5403979 5404605 -183874949 - HAL1 LINE L1 -30 2477 1852 306 255 68 19 chr6 5404653 5404814 -183874740 - LTR67 LTR ERVL -8 549 381 279 54 0 0 chr6 5405244 5405281 -183874273 + (TG)n Simple_repeat Simple_repeat 2 38 0 1830 182 0 3 chr6 5405321 5405617 -183873937 - AluSx SINE Alu -17 295 1 303 233 181 15 chr6 5405714 5405847 -183873707 - L1MB8 LINE L1 -64 6114 5960 316 103 0 35 chr6 5405847 5405905 -183873649 - Alu SINE Alu -13 289 234 2756 190 91 103 chr6 5405905 5407215 -183872339 - L1ME1 LINE L1 -196 5970 4513 467 236 152 12 chr6 5407215 5407380 -183872174 - MER58A DNA MER1_type 0 224 37 2756 190 91 103 chr6 5407380 5407627 -183871927 - L1ME1 LINE L1 -1653 4513 4264 319 211 46 28 chr6 5407611 5407720 -183871834 - HAL1 LINE L1 -1043 1464 1354 * 198 204 0 45 chr6 5408378 5408422 -183871132 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5409065 5409088 -183870466 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 298 341 112 18 chr6 5409165 5409388 -183870166 + L3b LINE CR1 1272 1515 -68 249 322 99 16 chr6 5410651 5410772 -183868782 + L2 LINE L2 3160 3290 -23 231 234 125 16 chr6 5410958 5411086 -183868468 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5411465 5411505 -183868049 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 369 240 10 48 chr6 5412003 5412107 -183867447 + MIR3 SINE MIR 109 208 0 251 159 0 0 chr6 5412309 5412353 -183867201 - L3 LINE CR1 -8 1569 1526 * 256 178 0 0 chr6 5412314 5412359 -183867195 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5412631 5412657 -183866897 + (A)n Simple_repeat Simple_repeat 1 26 0 682 340 31 12 chr6 5414092 5414348 -183865206 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5414351 5414372 -183865182 + AT_rich Low_complexity Low_complexity 1 21 0 1281 159 0 5 chr6 5414432 5414730 -183864824 - MER2 DNA MER2_type 0 345 2 25 31 0 0 chr6 5416379 5416411 -183863143 + AT_rich Low_complexity Low_complexity 1 32 0 2151 136 3 0 chr6 5417890 5418199 -183861355 - AluSx SINE Alu -2 310 1 345 223 136 82 chr6 5419247 5419431 -183860123 + MIR SINE MIR 21 214 -48 332 140 0 0 chr6 5420622 5420682 -183858872 + FRAM/FAM SINE Alu 28 75 -100 236 234 52 0 chr6 5420763 5420840 -183858714 - L1MC4 LINE L1 -1350 6692 6612 671 159 26 0 chr6 5420840 5420991 -183858563 + (TA)n Simple_repeat Simple_repeat 1 155 0 32 26 0 0 chr6 5421003 5421042 -183858512 + AT_rich Low_complexity Low_complexity 1 39 0 2251 76 3 10 chr6 5421395 5421683 -183857871 + AluSc SINE Alu 1 286 -23 232 184 0 0 chr6 5422215 5422253 -183857301 - U6 snRNA snRNA -69 38 1 1344 179 105 10 chr6 5422262 5422558 -183856996 + MER7A DNA MER2_type 21 342 -4 2110 133 0 0 chr6 5423085 5423371 -183856183 - AluSx SINE Alu -26 286 1 2698 153 24 8 chr6 5425154 5425658 -183853896 + L1MC1 LINE L1 5822 6333 0 448 253 48 20 chr6 5425735 5425881 -183853673 - L1MD3 LINE L1 -215 7780 7631 5957 211 84 66 chr6 5425881 5427219 -183852335 - L1MC4a LINE L1 -288 7520 6122 1876 131 0 4 chr6 5427219 5427487 -183852067 - AluSx SINE Alu -30 282 16 5957 211 84 66 chr6 5427487 5428372 -183851182 - L1MC4a LINE L1 -1686 6122 5255 392 318 39 37 chr6 5428479 5428644 -183850910 - L1 LINE L1 -3325 2821 2662 240 35 0 0 chr6 5428644 5428673 -183850881 + (TG)n Simple_repeat Simple_repeat 2 30 0 392 318 39 37 chr6 5428673 5428808 -183850746 - L1 LINE L1 -3484 2662 2529 234 280 31 44 chr6 5428884 5429109 -183850445 - L1 LINE L1 -3687 2459 2238 272 317 86 31 chr6 5429459 5429938 -183849616 - HAL1b LINE L1 -510 838 334 323 347 52 21 chr6 5429999 5430192 -183849362 - HAL1 LINE L1 -1218 1289 1091 212 222 14 42 chr6 5430244 5430316 -183849238 + T-rich Low_complexity Low_complexity 2 71 0 201 39 0 0 chr6 5431047 5431073 -183848481 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr6 5431533 5431565 -183847989 + AT_rich Low_complexity Low_complexity 1 32 0 408 294 94 0 chr6 5431925 5432105 -183847449 - MIR SINE MIR 0 262 66 191 300 25 25 chr6 5432108 5432188 -183847366 - L2 LINE L2 -37 3276 3197 1547 156 51 0 chr6 5432746 5432802 -183846752 - MER46B DNA MER2_type -2495 236 184 2250 93 3 46 chr6 5432802 5433126 -183846428 - AluSg SINE Alu 0 310 1 1547 156 51 0 chr6 5433126 5433364 -183846190 - MER46B DNA MER2_type -2547 184 52 2353 68 3 19 chr6 5433507 5433817 -183845737 - AluY SINE Alu -6 305 1 267 188 31 0 chr6 5434246 5434310 -183845244 - L1ME2 LINE L1 -10 6154 6089 * 1193 235 92 25 chr6 5434304 5434976 -183844578 - L1ME2 LINE L1 -21 6143 5435 288 0 0 0 chr6 5435069 5435101 -183844453 + (TA)n Simple_repeat Simple_repeat 1 32 0 284 188 72 0 chr6 5435101 5435170 -183844384 + L1ME1 LINE L1 5368 5441 -721 307 252 47 16 chr6 5435346 5435473 -183844081 - L1MEd LINE L1 -5980 139 9 229 363 48 16 chr6 5436510 5436634 -183842920 + MIR3 SINE MIR 14 141 -67 2128 101 3 14 chr6 5437201 5437498 -183842056 + AluSc SINE Alu 1 294 -15 2141 119 0 28 chr6 5438175 5438495 -183841059 - AluSx SINE Alu -1 311 1 28 29 0 0 chr6 5439202 5439237 -183840317 + AT_rich Low_complexity Low_complexity 1 35 0 994 219 22 75 chr6 5439703 5440064 -183839490 + L1ME1 LINE L1 5802 6143 -23 247 263 11 11 chr6 5440091 5440186 -183839368 + MER113 DNA MER1_type? 139 233 -288 1740 162 10 26 chr6 5440337 5440645 -183838909 + AluJo SINE Alu 1 303 -9 326 311 41 16 chr6 5440655 5440777 -183838777 + MIR SINE MIR 20 144 -118 30 27 0 0 chr6 5441365 5441402 -183838152 + AT_rich Low_complexity Low_complexity 1 37 0 47 0 0 0 chr6 5442804 5442851 -183836703 + AT_rich Low_complexity Low_complexity 1 47 0 2014 87 11 4 chr6 5442876 5443142 -183836412 + AluSx SINE Alu 29 296 -16 620 43 98 0 chr6 5443142 5443305 -183836249 + (TA)n Simple_repeat Simple_repeat 1 179 0 25 0 0 0 chr6 5443330 5443355 -183836199 + AT_rich Low_complexity Low_complexity 1 25 0 402 295 31 55 chr6 5443900 5444155 -183835399 + MIR SINE MIR 4 249 -13 183 42 0 0 chr6 5444917 5444941 -183834613 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2095 115 0 7 chr6 5444941 5445228 -183834326 - AluSx SINE Alu -27 285 1 22 0 0 0 chr6 5445228 5445250 -183834304 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 29 10 chr6 5445531 5445635 -183833919 + CT-rich Low_complexity Low_complexity 2 107 0 319 324 176 9 chr6 5445746 5445968 -183833586 - MIR SINE MIR -1 261 3 204 350 39 82 chr6 5447252 5447508 -183832046 - L2 LINE L2 -19 3253 3009 316 283 116 52 chr6 5447508 5447681 -183831873 - MER5A DNA MER1_type -1 188 5 1218 203 27 34 chr6 5447714 5448150 -183831404 - L1ME1 LINE L1 -4 6162 5628 820 252 48 21 chr6 5448142 5448475 -183831079 - L1ME LINE L1 -3479 2601 2260 * 814 271 66 69 chr6 5448483 5449459 -183830095 - L1ME LINE L1 -4310 1770 780 1339 149 40 4 chr6 5449459 5449687 -183829867 - MER46A DNA MER2_type 0 236 1 814 271 66 69 chr6 5449687 5450139 -183829415 - L1ME LINE L1 -5300 780 328 318 262 41 103 chr6 5450228 5450373 -183829181 - L1ME LINE L1 -5844 226 91 252 214 29 14 chr6 5450632 5450702 -183828852 + CT-rich Low_complexity Low_complexity 3 73 0 503 268 91 63 chr6 5450884 5451246 -183828308 - L1ME4a LINE L1 -1 6120 5749 230 289 13 0 chr6 5451258 5451334 -183828220 - L1ME4a LINE L1 -422 5699 5623 660 163 0 62 chr6 5451507 5451636 -183827918 - FLAM_A SINE Alu -11 122 2 2135 134 0 6 chr6 5451724 5452037 -183827517 - AluSx SINE Alu -1 311 1 1393 198 14 11 chr6 5452047 5452330 -183827224 + MER82 DNA MER2_type 358 641 -12 255 103 0 0 chr6 5452463 5452502 -183827052 + (TG)n Simple_repeat Simple_repeat 1 39 0 692 89 0 0 chr6 5452547 5452637 -183826917 + AluSg SINE Alu 1 90 -220 2015 79 0 0 chr6 5502637 5502890 -183776664 + AluY SINE Alu 59 311 0 705 224 156 29 chr6 5502900 5503105 -183776449 + MIR SINE MIR 11 241 -21 2289 81 0 42 chr6 5503316 5503623 -183775931 - AluSx SINE Alu -16 296 3 258 156 47 16 chr6 5503964 5504028 -183775526 + T-rich Low_complexity Low_complexity 3 68 0 2187 123 0 0 chr6 5504061 5504363 -183775191 + AluSg SINE Alu 1 302 -8 227 100 0 25 chr6 5504365 5504405 -183775149 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 192 61 61 0 chr6 5504627 5504660 -183774894 + MIR SINE MIR 116 150 -112 218 240 0 0 chr6 5505192 5505242 -183774312 - L2 LINE L2 -2 3270 3221 478 307 42 16 chr6 5506417 5506606 -183772948 - MIR SINE MIR 0 262 69 193 143 0 29 chr6 5507441 5507476 -183772078 + MIR SINE MIR 109 142 -120 797 184 126 26 chr6 5507649 5507839 -183771715 - MIR SINE MIR -18 244 36 306 0 0 0 chr6 5508160 5508194 -183771360 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 298 0 18 chr6 5508558 5508615 -183770939 + CT-rich Low_complexity Low_complexity 1 56 0 2636 155 29 31 chr6 5509232 5509749 -183769805 - L1MA9 LINE L1 -22 6290 5775 227 241 48 0 chr6 5509749 5509832 -183769722 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1162 165 26 35 chr6 5509833 5510063 -183769491 - L1MA9 LINE L1 -524 5788 5561 * 4008 171 58 1 chr6 5510058 5510699 -183768855 - L1MA9 LINE L1 -1777 4369 3675 207 0 0 0 chr6 5510699 5510722 -183768832 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4008 171 58 1 chr6 5510722 5510857 -183768697 - L1MA9 LINE L1 -2471 3675 3549 409 285 7 35 chr6 5511148 5511292 -183768262 + MIR SINE MIR 67 206 -56 371 220 156 0 chr6 5511642 5511751 -183767803 - MER103 DNA DNA -38 128 3 447 247 227 0 chr6 5511808 5511958 -183767596 + MIR SINE MIR 18 201 -61 479 232 209 38 chr6 5513208 5513419 -183766135 + MIR SINE MIR 14 260 -2 574 298 44 24 chr6 5513943 5514191 -183765363 + MIR SINE MIR 5 257 -5 28 0 0 0 chr6 5515881 5515909 -183763645 + AT_rich Low_complexity Low_complexity 1 28 0 2126 137 3 6 chr6 5516154 5516467 -183763087 + AluJb SINE Alu 1 312 0 1429 218 209 14 chr6 5518498 5519158 -183760396 - LTR50 LTR ERVL -1 794 6 307 250 86 23 chr6 5519823 5519951 -183759603 - MIR SINE MIR -67 195 60 268 311 58 0 chr6 5520069 5520172 -183759382 - MIR SINE MIR -46 216 108 184 301 122 41 chr6 5520282 5520405 -183759149 + MIR3 SINE MIR 10 142 -66 1710 169 14 0 chr6 5522160 5522439 -183757115 + AluJo SINE Alu 5 287 -25 231 146 0 0 chr6 5522447 5522488 -183757066 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 664 118 55 31 chr6 5523647 5523774 -183755780 - L1MB8 LINE L1 -19 6159 6030 1331 198 71 39 chr6 5524916 5525254 -183754300 + MLT1A1 LTR MaLR 6 354 -11 2492 77 0 6 chr6 5525291 5525603 -183753951 + AluSp SINE Alu 1 310 -3 648 310 45 4 chr6 5525625 5525867 -183753687 + MIR SINE MIR 8 259 -3 2380 92 3 0 chr6 5526419 5526722 -183752832 + AluSc SINE Alu 1 304 -5 254 234 234 0 chr6 5526976 5527053 -183752501 - MIR SINE MIR -54 208 114 340 147 80 13 chr6 5527068 5527143 -183752411 - REP3 LTR ERV 0 562 483 1196 187 5 5 chr6 5527144 5527363 -183752191 - AluJb SINE Alu -9 303 85 2003 206 71 21 chr6 5527363 5527475 -183752079 - REP3 LTR ERV -70 492 387 2131 202 53 18 chr6 5527475 5527926 -183751628 - MLT1C LTR MaLR 0 467 1 2003 206 71 21 chr6 5527926 5528279 -183751275 - REP3 LTR ERV -175 387 4 599 264 16 21 chr6 5528413 5528606 -183750948 - LTR16A LTR ERVL -1 449 258 531 300 127 22 chr6 5529896 5530541 -183749013 + L1MEd LINE L1 860 1668 -822 916 264 69 27 chr6 5530610 5531058 -183748496 - LTR40a LTR ERVL -6 513 97 22 35 0 0 chr6 5531131 5531160 -183748394 + AT_rich Low_complexity Low_complexity 1 29 0 420 20 0 0 chr6 5531333 5531382 -183748172 + (TG)n Simple_repeat Simple_repeat 2 50 0 271 272 41 54 chr6 5532045 5532192 -183747362 - L1M4 LINE L1 -3276 2870 2726 236 393 0 0 chr6 5533468 5533636 -183745918 + (CCA)n Simple_repeat Simple_repeat 1 168 0 23 33 0 0 chr6 5534358 5534388 -183745166 + AT_rich Low_complexity Low_complexity 1 30 0 1263 183 201 14 chr6 5534415 5534704 -183744850 - MER2 DNA MER2_type 0 344 2 190 279 0 0 chr6 5534790 5534833 -183744721 + MIR3 SINE MIR 165 207 -1 434 349 92 34 chr6 5537733 5538025 -183741529 - L2 LINE L2 -10 3262 2954 238 262 12 48 chr6 5538181 5538265 -183741289 - L2 LINE L2 -531 2783 2703 530 326 80 46 chr6 5538273 5538449 -183741105 - HAL1b LINE L1 -437 911 742 2205 76 40 7 chr6 5538449 5538750 -183740804 - AluY SINE Alu 0 311 1 530 326 80 46 chr6 5538750 5539076 -183740478 - HAL1b LINE L1 -606 742 392 479 259 75 49 chr6 5539082 5539348 -183740206 - HAL1b LINE L1 -987 361 89 255 122 0 0 chr6 5540062 5540111 -183739443 + (A)n Simple_repeat Simple_repeat 1 49 0 256 159 302 0 chr6 5540284 5540347 -183739207 + MLT1J LTR MaLR 353 434 -77 1578 112 29 8 chr6 5540492 5540733 -183738821 - Tigger4(Zombi) DNA MER2_type 0 2731 2486 430 156 0 0 chr6 5540724 5540788 -183738766 - Tigger4(Zombi) DNA MER2_type -2666 65 2 * 23 33 0 0 chr6 5541184 5541214 -183738340 + AT_rich Low_complexity Low_complexity 1 30 0 589 258 165 56 chr6 5541487 5541948 -183737606 + MLT1J LTR MaLR 1 511 0 854 254 26 10 chr6 5542041 5542234 -183737320 - MER58A DNA MER1_type -28 196 1 815 132 101 141 chr6 5544123 5544350 -183735204 - MER20 DNA MER1_type -1 218 1 1421 178 113 14 chr6 5545167 5545442 -183734112 - AluJo SINE Alu -10 302 1 1036 163 15 49 chr6 5546471 5546674 -183732880 + MLT1A1 LTR MaLR 1 196 -169 999 189 25 15 chr6 5546687 5546888 -183732666 + MLT1A1 LTR MaLR 163 365 0 279 314 146 11 chr6 5547038 5547223 -183732331 + MIR SINE MIR 7 216 -46 21 0 0 0 chr6 5547456 5547477 -183732077 + AT_rich Low_complexity Low_complexity 1 21 0 2280 115 0 0 chr6 5547483 5547788 -183731766 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr6 5548867 5548890 -183730664 + GC_rich Low_complexity Low_complexity 1 23 0 1529 122 37 29 chr6 5550821 5551067 -183728487 - Tigger3(Golem) DNA MER2_type -1 3028 2781 1130 207 10 0 chr6 5551064 5551267 -183728287 - Tigger3(Golem) DNA MER2_type -2824 205 1 * 724 181 111 23 chr6 5556446 5556617 -183722937 - L1MB5 LINE L1 0 6174 5989 397 188 10 10 chr6 5556618 5556714 -183722840 + CT-rich Low_complexity Low_complexity 1 96 0 1188 152 24 5 chr6 5556722 5556932 -183722622 - L1MB5 LINE L1 -711 5467 5254 326 185 12 0 chr6 5556985 5557066 -183722488 + CT-rich Low_complexity Low_complexity 3 84 0 745 217 0 0 chr6 5557185 5557314 -183722240 - FLAM_A SINE Alu -4 129 1 2385 89 26 0 chr6 5557315 5557618 -183721936 - AluSx SINE Alu 0 312 2 352 312 89 58 chr6 5557818 5558302 -183721252 - L1M4 LINE L1 -754 5392 4894 1641 146 45 68 chr6 5558353 5558661 -183720893 - AluJo SINE Alu -11 301 1 426 273 73 12 chr6 5559031 5559196 -183720358 + MIR SINE MIR 5 179 -83 202 204 0 45 chr6 5559196 5559240 -183720314 + L2 LINE L2 3221 3262 -10 223 281 34 0 chr6 5561502 5561591 -183717963 - MIR SINE MIR -152 110 19 2191 125 74 11 chr6 5561674 5562041 -183717513 - MLT1B LTR MaLR 0 390 1 2421 91 0 0 chr6 5562334 5562642 -183716912 + AluSx SINE Alu 1 308 -4 197 231 215 0 chr6 5563125 5563190 -183716364 + MIR SINE MIR 42 120 -88 234 0 0 0 chr6 5564191 5564217 -183715337 + (TG)n Simple_repeat Simple_repeat 2 27 0 1586 194 40 65 chr6 5564573 5565021 -183714533 + LTR56 LTR ERV1 9 445 0 2034 137 0 0 chr6 5565335 5565648 -183713906 - AluSx SINE Alu 0 313 1 251 250 232 9 chr6 5566001 5566113 -183713441 + L2 LINE L2 3175 3311 -2 241 268 0 0 chr6 5566147 5566203 -183713351 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 233 250 0 0 chr6 5566204 5566260 -183713294 - L1MD3 LINE L1 -1328 6667 6612 1791 150 33 13 chr6 5568258 5568564 -183710990 - AluJb SINE Alu 0 312 1 323 102 20 0 chr6 5568655 5568704 -183710850 - Alu SINE Alu -243 57 8 276 270 51 29 chr6 5570385 5570522 -183709032 + MIR3 SINE MIR 65 204 -4 2369 123 6 3 chr6 5570626 5570968 -183708586 + MER2 DNA MER2_type 1 343 -1 216 230 122 0 chr6 5571315 5571389 -183708165 + L2 LINE L2 3186 3268 -4 624 276 84 10 chr6 5571911 5572114 -183707440 + MIR SINE MIR 7 224 -38 229 239 28 28 chr6 5572659 5572730 -183706824 + CT-rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr6 5572808 5572845 -183706709 + AT_rich Low_complexity Low_complexity 1 37 0 523 229 15 8 chr6 5572868 5572999 -183706555 + L2 LINE L2 3182 3313 0 703 288 14 18 chr6 5573624 5573846 -183705708 - MIR SINE MIR -36 226 6 195 42 0 0 chr6 5574307 5574331 -183705223 + (T)n Simple_repeat Simple_repeat 1 24 0 1988 72 12 0 chr6 5574578 5574828 -183704726 - AluY SINE Alu -58 253 1 230 326 8 47 chr6 5574916 5575045 -183704509 + MIR SINE MIR 28 151 -111 1289 257 58 58 chr6 5575045 5575527 -183704027 + HAL1 LINE L1 1 482 -2025 724 268 38 1 chr6 5575730 5575943 -183703611 - MIR SINE MIR -13 249 31 591 275 35 45 chr6 5576162 5576449 -183703105 + HAL1 LINE L1 2224 2507 0 257 372 0 0 chr6 5577466 5577552 -183702002 - L2 LINE L2 -13 3259 3174 230 290 194 0 chr6 5577773 5577866 -183701688 - L2 LINE L2 0 3313 3203 2403 161 37 37 chr6 5578791 5579225 -183700329 + Tigger2a DNA MER2_type 1 434 0 1197 207 27 3 chr6 5579424 5579867 -183699687 - MLT1D LTR MaLR 0 505 1 2286 104 7 0 chr6 5580602 5580900 -183698654 - AluSx SINE Alu -12 300 1 250 218 46 11 chr6 5581093 5581180 -183698374 + (TA)n Simple_repeat Simple_repeat 1 90 0 742 222 81 30 chr6 5581874 5582054 -183697500 + MIR SINE MIR 17 213 -49 1976 109 4 14 chr6 5582054 5582329 -183697225 + AluSp SINE Alu 33 304 -9 742 222 81 30 chr6 5582329 5582382 -183697172 + MIR SINE MIR 213 262 0 296 236 0 28 chr6 5583234 5583306 -183696248 - MIR3 SINE MIR -1 207 138 184 288 25 50 chr6 5583439 5583519 -183696035 - L2 LINE L2 -77 3195 3118 204 222 0 0 chr6 5584182 5584227 -183695327 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1840 169 0 16 chr6 5584413 5584721 -183694833 + AluJb SINE Alu 1 303 -9 884 305 150 27 chr6 5584848 5586065 -183693489 - L2 LINE L2 -420 2894 1528 817 234 53 13 chr6 5586792 5587019 -183692535 + MIR SINE MIR 14 249 -13 270 196 144 21 chr6 5589045 5589142 -183690412 + L3 LINE CR1 1278 1386 -191 4076 111 37 0 chr6 5590678 5591274 -183688280 + L1PA13 LINE L1 5546 6163 0 2197 115 0 0 chr6 5591289 5591585 -183687969 + AluSg SINE Alu 1 296 -14 350 247 22 0 chr6 5591727 5591816 -183687738 - MIR3 SINE MIR -4 204 114 228 316 13 3 chr6 5592631 5592723 -183686831 + MIR SINE MIR 12 106 -102 2346 94 3 10 chr6 5592738 5593047 -183686507 - AluSq SINE Alu -6 307 1 221 242 133 55 chr6 5593048 5593176 -183686378 + MIR SINE MIR 88 225 -37 198 327 158 0 chr6 5594449 5594550 -183685004 + L2 LINE L2 3137 3253 -19 240 111 0 0 chr6 5598245 5598281 -183681273 + (A)n Simple_repeat Simple_repeat 1 36 0 307 354 12 43 chr6 5598887 5599051 -183680503 - MIR3 SINE MIR -27 181 23 181 227 0 0 chr6 5599138 5599182 -183680372 + L2 LINE L2 3261 3304 -9 360 0 0 0 chr6 5599251 5599291 -183680263 + (CA)n Simple_repeat Simple_repeat 2 41 0 191 328 17 0 chr6 5601834 5601892 -183677662 + L2 LINE L2 3128 3186 -86 329 226 0 43 chr6 5604662 5604755 -183674799 - L1ME4a LINE L1 -74 6047 5959 701 288 133 20 chr6 5604861 5605346 -183674208 + L1ME4a LINE L1 5310 5837 -284 299 272 65 0 chr6 5605483 5605575 -183673979 + L1ME4a LINE L1 5997 6094 -27 463 289 187 18 chr6 5606683 5607441 -183672113 - L2 LINE L2 -1 3312 2376 3487 71 2 0 chr6 5607655 5608106 -183671448 - L1PA8 LINE L1 0 6172 5721 265 224 0 45 chr6 5610135 5610202 -183669352 + L2 LINE L2 3200 3263 -9 44751 42 4 0 chr6 5610252 5616388 -183663166 - L1PA4 LINE L1 -1 6154 1 184 340 0 0 chr6 5616521 5616574 -183662980 - L2 LINE L2 -15 3257 3205 1371 254 172 12 chr6 5617618 5618150 -183661404 - MLT1G LTR MaLR -3 587 14 24 0 0 0 chr6 5618578 5618602 -183660952 + AT_rich Low_complexity Low_complexity 1 24 0 1643 176 7 27 chr6 5618773 5619074 -183660480 + AluJo SINE Alu 1 295 -17 580 274 65 11 chr6 5619520 5619706 -183659848 - MIR SINE MIR -6 256 61 586 293 116 19 chr6 5619943 5620228 -183659326 + L1MC/D LINE L1 5315 5625 -599 22 0 0 0 chr6 5621936 5621958 -183657596 + AT_rich Low_complexity Low_complexity 1 22 0 2076 141 128 16 chr6 5622175 5622558 -183656996 - MSTA LTR MaLR -2 426 1 365 250 98 8 chr6 5622781 5622913 -183656641 - MLT1I LTR MaLR 0 409 266 438 167 12 0 chr6 5623449 5623533 -183656021 + MER5A DNA MER1_type 20 104 -85 1715 88 0 5 chr6 5623562 5623778 -183655776 - AluSg/x SINE Alu -15 297 83 358 280 189 0 chr6 5623822 5623965 -183655589 - MER5B DNA MER1_type -3 175 6 2087 94 36 0 chr6 5624460 5624735 -183654819 - AluSg SINE Alu -14 296 12 1956 159 47 6 chr6 5628149 5628489 -183651065 - MLT1A1 LTR MaLR -1 364 11 383 193 34 0 chr6 5628926 5629014 -183650540 + MIR SINE MIR 122 212 -50 24 0 0 0 chr6 5629060 5629084 -183650470 + AT_rich Low_complexity Low_complexity 1 24 0 2109 160 0 3 chr6 5630047 5630384 -183649170 - MER1B DNA MER1_type -1 336 1 1723 142 0 12 chr6 5632724 5632978 -183646576 - AluJo SINE Alu -24 288 38 336 216 0 0 chr6 5633723 5633820 -183645734 + (TG)n Simple_repeat Simple_repeat 1 97 0 1462 293 75 11 chr6 5634424 5635039 -183644515 + L1MEc LINE L1 31 684 -5712 2763 170 135 121 chr6 5635040 5635339 -183644215 + L1MC3 LINE L1 6757 7050 -735 276 30 0 0 chr6 5635339 5635372 -183644182 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2763 170 135 121 chr6 5635372 5635407 -183644147 + L1MC3 LINE L1 7050 7083 -702 260 234 26 13 chr6 5635407 5635484 -183644070 + MLT1F1 LTR MaLR 33 110 -457 2763 170 135 121 chr6 5635484 5636074 -183643480 + L1MC3 LINE L1 7083 7772 -13 226 110 121 55 chr6 5636074 5636165 -183643389 - MER63 DNA MER1_type -91 970 874 189 337 23 12 chr6 5636644 5636730 -183642824 - MIR SINE MIR -149 113 27 22 0 0 0 chr6 5638020 5638042 -183641512 + AT_rich Low_complexity Low_complexity 1 22 0 2278 113 0 0 chr6 5638794 5639097 -183640457 + AluSx SINE Alu 1 300 -12 650 301 74 5 chr6 5639109 5639325 -183640229 - MIR SINE MIR -19 243 13 3618 170 29 42 chr6 5639380 5640144 -183639410 - L1MB8 LINE L1 -51 6127 5374 331 252 119 50 chr6 5640153 5640431 -183639123 - L1MC5 LINE L1 -182 7779 7483 3714 169 69 90 chr6 5640488 5641397 -183638157 - MER21A LTR ERV1 -26 905 16 363 44 0 0 chr6 5641397 5641442 -183638112 + (TG)n Simple_repeat Simple_repeat 2 46 0 914 154 37 56 chr6 5641483 5641697 -183637857 - L1MC5 LINE L1 -494 7467 7258 21 0 0 0 chr6 5641753 5641774 -183637780 + AT_rich Low_complexity Low_complexity 1 21 0 257 143 24 0 chr6 5641805 5641847 -183637707 - L1MC5 LINE L1 -737 7224 7182 252 0 0 0 chr6 5641960 5641988 -183637566 + (TA)n Simple_repeat Simple_repeat 1 28 0 2019 108 4 0 chr6 5641988 5642265 -183637289 - AluSx SINE Alu -34 278 1 322 333 63 24 chr6 5642326 5642452 -183637102 + L2 LINE L2 3142 3272 0 1775 164 3 22 chr6 5643152 5643529 -183636025 + AluJb SINE Alu 1 371 0 208 273 73 0 chr6 5644564 5644619 -183634935 - L2 LINE L2 -16 3297 3239 5117 183 86 64 chr6 5644684 5644817 -183634737 - Charlie1a DNA MER1_type -1325 1436 1307 1419 179 13 43 chr6 5644817 5645119 -183634435 + AluJo SINE Alu 3 295 -17 5117 183 86 64 chr6 5645119 5646386 -183633168 - Charlie1a DNA MER1_type -1454 1307 6 275 317 54 32 chr6 5646586 5646807 -183632747 - L2 LINE L2 -361 2953 2728 364 311 92 41 chr6 5647395 5647591 -183631963 + MIR SINE MIR 6 211 -51 385 329 35 21 chr6 5648774 5648917 -183630637 - L3 LINE CR1 -154 1423 1279 265 250 125 39 chr6 5648919 5649047 -183630507 - L2 LINE L2 -16 3297 3159 640 293 139 5 chr6 5649488 5649703 -183629851 + MIR SINE MIR 13 256 -6 2062 106 3 0 chr6 5649705 5649998 -183629556 + AluSx SINE Alu 1 294 -18 294 269 123 58 chr6 5651049 5651220 -183628334 + MIR SINE MIR 67 248 -14 1029 212 5 5 chr6 5653908 5654106 -183625448 - MER20 DNA MER1_type -21 198 1 800 217 128 10 chr6 5654840 5655043 -183624511 - MIR SINE MIR 0 262 36 249 313 21 10 chr6 5655306 5655402 -183624152 + CT-rich Low_complexity Low_complexity 1 97 0 391 200 27 0 chr6 5656180 5656255 -183623299 - L2 LINE L2 -11 3261 3185 253 312 11 11 chr6 5656392 5656485 -183623069 + MIR SINE MIR 162 254 -8 198 329 89 0 chr6 5656936 5657015 -183622539 - L2 LINE L2 -17 3255 3170 487 299 77 11 chr6 5657822 5658052 -183621502 + MIR SINE MIR 13 261 -1 367 357 14 0 chr6 5658641 5658784 -183620770 - MIR SINE MIR -10 252 108 318 67 0 0 chr6 5658854 5658899 -183620655 + (CATA)n Simple_repeat Simple_repeat 2 46 0 424 272 32 10 chr6 5659271 5659382 -183620172 - MIR SINE MIR -88 120 6 1579 203 73 35 chr6 5660058 5660482 -183619072 - MLT1F LTR MaLR -102 440 1 2050 127 0 0 chr6 5661302 5661594 -183617960 + AluSg SINE Alu 1 292 -18 375 237 73 73 chr6 5661672 5661941 -183617613 + MLT1J LTR MaLR 62 364 -147 195 100 0 0 chr6 5661988 5662018 -183617536 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1658 154 11 7 chr6 5662029 5662301 -183617253 - AluJo SINE Alu -39 273 1 1138 175 75 12 chr6 5663010 5663250 -183616304 - L1MD2 LINE L1 -275 6084 5830 934 129 0 8 chr6 5663265 5663397 -183616157 + FLAM_C SINE Alu 1 131 -2 577 297 91 18 chr6 5663908 5664127 -183615427 - MIR SINE MIR -15 247 13 2234 99 0 3 chr6 5665690 5666003 -183613551 - AluSx SINE Alu 0 312 1 533 290 43 6 chr6 5668461 5668623 -183610931 - MIR SINE MIR -75 187 20 23 68 0 0 chr6 5668901 5668945 -183610609 + AT_rich Low_complexity Low_complexity 1 44 0 1766 159 0 3 chr6 5669597 5669887 -183609667 - AluJb SINE Alu -19 293 5 187 282 68 68 chr6 5670724 5670827 -183608727 + L2 LINE L2 3158 3260 -12 1368 237 90 62 chr6 5670977 5671557 -183607997 - L2 LINE L2 -221 3092 2482 490 283 7 7 chr6 5671560 5671698 -183607856 - MLT1F LTR MaLR -404 138 1 316 236 0 2 chr6 5672680 5672754 -183606800 - MIR SINE MIR -84 124 52 288 223 204 51 chr6 5673356 5673513 -183606041 - L2 LINE L2 -571 2743 2563 501 309 84 50 chr6 5674037 5674357 -183605197 - L2 LINE L2 -1 3271 2941 298 307 111 33 chr6 5676769 5676922 -183602632 - MIR3 SINE MIR -24 184 20 218 317 120 7 chr6 5676994 5677136 -183602418 + MIR SINE MIR 61 218 -44 276 287 67 28 chr6 5678133 5678339 -183601215 - MIR SINE MIR -1 261 2 1739 293 121 36 chr6 5678693 5679255 -183600299 - L1MEd LINE L1 -863 1627 1114 2327 66 33 0 chr6 5679255 5679557 -183599997 - L1PA7 LINE L1 -4 6150 5839 1739 293 121 36 chr6 5679557 5680051 -183599503 - L1MEd LINE L1 -1376 1114 664 189 0 0 0 chr6 5680051 5680072 -183599482 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1739 293 121 36 chr6 5680072 5680335 -183599219 - L1MEd LINE L1 -1826 664 109 1994 130 154 16 chr6 5680369 5680738 -183598816 - MSTA LTR MaLR 0 428 9 279 257 14 40 chr6 5681697 5681771 -183597783 + MIR SINE MIR 16 87 -175 287 315 41 20 chr6 5682285 5682431 -183597123 + MARNA DNA Mariner 196 344 -242 320 356 19 0 chr6 5683104 5683208 -183596346 - MIR SINE MIR -109 153 48 507 307 21 107 chr6 5683214 5683589 -183595965 + L2 LINE L2 2930 3272 0 233 285 220 32 chr6 5683737 5683923 -183595631 + L3 LINE CR1 1259 1479 -98 180 0 0 0 chr6 5685860 5685880 -183593674 + (A)n Simple_repeat Simple_repeat 1 20 0 330 122 0 0 chr6 5686078 5686127 -183593427 - L1MB4 LINE L1 -302 5878 5830 242 182 164 18 chr6 5686137 5686192 -183593362 - MIR SINE MIR -119 143 81 181 169 92 77 chr6 5686138 5686203 -183593351 + MIR3 SINE MIR 131 196 -12 * 280 268 141 64 chr6 5686240 5686460 -183593094 - MIR SINE MIR 0 262 26 1473 159 0 23 chr6 5687272 5687529 -183592025 + AluJo SINE Alu 52 302 -10 526 298 58 6 chr6 5687552 5687723 -183591831 - MIR3 SINE MIR -8 200 21 700 276 43 17 chr6 5688127 5688359 -183591195 - MIR SINE MIR -16 246 9 190 253 242 10 chr6 5689839 5689938 -183589616 + L2 LINE L2 3150 3271 -1 2799 161 61 37 chr6 5690710 5691116 -183588438 - L1MB5 LINE L1 -1 6173 5745 2341 89 0 0 chr6 5691116 5691407 -183588147 - AluSx SINE Alu -21 291 1 2799 161 61 37 chr6 5691407 5691621 -183587933 - L1MB5 LINE L1 -429 5745 5538 718 255 34 24 chr6 5691621 5691829 -183587725 + MIR SINE MIR 43 252 -10 2180 193 22 12 chr6 5692658 5693340 -183586214 - L1MB5 LINE L1 -658 5526 4839 288 77 0 0 chr6 5694443 5694482 -183585072 + (CTG)n Simple_repeat Simple_repeat 1 39 0 234 361 36 36 chr6 5694483 5694649 -183584905 - MIR3 SINE MIR -24 184 19 274 327 30 42 chr6 5694970 5695135 -183584419 + MER5B DNA MER1_type 13 175 -3 1385 161 94 58 chr6 5696799 5696987 -183582567 - MER7A DNA MER2_type -2692 346 141 2476 159 31 2 chr6 5696987 5697403 -183582151 + MSTA LTR MaLR 1 428 0 1385 161 94 58 chr6 5697403 5697543 -183582011 - MER7A DNA MER2_type -2897 141 8 207 330 33 22 chr6 5697624 5697715 -183581839 - MIR SINE MIR -79 183 92 1432 139 28 5 chr6 5697835 5698051 -183581503 + AluJo SINE Alu 86 306 -6 360 269 40 74 chr6 5698396 5698545 -183581009 + MIR SINE MIR 119 262 0 373 335 30 30 chr6 5698558 5698722 -183580832 - MIR3 SINE MIR -5 203 40 218 303 15 0 chr6 5699671 5699737 -183579817 - L2 LINE L2 -49 3223 3157 208 147 0 0 chr6 5700412 5700446 -183579108 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 230 190 172 78 chr6 5700586 5700702 -183578852 + MIR SINE MIR 27 153 -109 1517 203 80 45 chr6 5701441 5701990 -183577564 + L1ME LINE L1 4860 5423 -741 481 183 44 36 chr6 5701988 5702125 -183577429 + L1ME2 LINE L1 5918 6055 -109 * 225 0 0 0 chr6 5702125 5702150 -183577404 + (T)n Simple_repeat Simple_repeat 1 25 0 426 20 0 0 chr6 5702181 5702232 -183577322 + (TC)n Simple_repeat Simple_repeat 2 52 0 807 157 22 30 chr6 5702232 5702366 -183577188 - FLAM_C SINE Alu 0 133 1 564 179 8 8 chr6 5702367 5702484 -183577070 + L1ME2 LINE L1 6039 6155 -9 540 246 63 0 chr6 5703295 5703437 -183576117 + MIR SINE MIR 56 206 -56 7355 51 0 0 chr6 5703514 5704677 -183574877 - L1PA6 LINE L1 0 6154 4995 707 148 15 15 chr6 5704677 5704812 -183574742 + L1MB7 LINE L1 6050 6184 0 341 154 14 42 chr6 5704812 5704894 -183574660 + L1ME LINE L1 5595 5665 -501 189 279 180 8 chr6 5705220 5705342 -183574212 - MER5A DNA MER1_type -3 186 44 2227 201 19 11 chr6 5705479 5705941 -183573613 + MLT1C LTR MaLR 2 467 0 245 211 28 0 chr6 5706694 5706765 -183572789 + CT-rich Low_complexity Low_complexity 1 73 0 244 291 0 0 chr6 5707379 5707434 -183572120 + MIR SINE MIR 7 61 -201 3110 179 91 24 chr6 5707601 5708323 -183571231 + MER21A LTR ERV1 1 771 -160 196 293 83 53 chr6 5708523 5708656 -183570898 - MIR SINE MIR -45 217 81 211 303 40 0 chr6 5709389 5709465 -183570089 - MIR3 SINE MIR -6 202 124 275 258 0 16 chr6 5710055 5710117 -183569437 + MIR SINE MIR 89 149 -113 391 118 24 24 chr6 5710119 5710204 -183569350 - LTR67 LTR ERVL -2 555 471 2668 174 41 6 chr6 5710205 5710739 -183568815 + L1MB5 LINE L1 5572 6124 -50 985 233 41 23 chr6 5711756 5712099 -183567455 - L1MC4 LINE L1 -5 8037 7689 436 205 103 0 chr6 5712099 5712207 -183567347 - L1 LINE L1 -3294 2852 2736 256 326 31 0 chr6 5712256 5712354 -183567200 - L1ME LINE L1 -5625 445 345 345 82 0 0 chr6 5713151 5713200 -183566354 + (CA)n Simple_repeat Simple_repeat 2 50 0 634 197 61 3 chr6 5713617 5713802 -183565752 - MLT1B LTR MaLR 0 390 217 3542 86 2 4 chr6 5713802 5714279 -183565275 - L1PA13 LINE L1 -2 6161 5686 634 197 61 3 chr6 5714279 5714403 -183565151 - MLT1B LTR MaLR -173 217 1 1458 144 164 12 chr6 5714724 5714980 -183564574 + AluY SINE Alu 1 295 -16 5315 146 37 39 chr6 5715111 5715295 -183564259 - L1MA9 LINE L1 0 6312 6129 2512 85 0 0 chr6 5715295 5715601 -183563953 - AluY SINE Alu -5 306 1 5315 146 37 39 chr6 5715601 5716686 -183562868 - L1MA9 LINE L1 -183 6129 5043 251 146 21 0 chr6 5716684 5716732 -183562822 + L1MA9 LINE L1 4989 5037 -1109 * 826 305 71 24 chr6 5716735 5717155 -183562399 + L2 LINE L2 1033 1472 -1842 1986 122 4 4 chr6 5717714 5717992 -183561562 + AluY SINE Alu 1 278 -33 200 35 35 0 chr6 5717992 5718021 -183561533 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 694 272 111 48 chr6 5718234 5718949 -183560605 - L2 LINE L2 -6 3307 2544 558 230 115 48 chr6 5719068 5719277 -183560277 - MER31B LTR ERV1 0 466 244 249 268 28 0 chr6 5719286 5719357 -183560197 - MER31B LTR ERV1 -382 84 12 2843 65 3 3 chr6 5719358 5719712 -183559842 - THE1A LTR MaLR -1 354 1 12311 82 4 1 chr6 5719712 5721287 -183558267 - THE1A-int LTR MaLR 0 1580 1 2789 80 11 0 chr6 5721287 5721638 -183557916 - THE1A LTR MaLR 0 355 1 403 247 123 31 chr6 5721659 5721821 -183557733 - L2 LINE L2 -940 2374 2198 2346 159 7 27 chr6 5721913 5722316 -183557238 + MSTD LTR MaLR 2 396 0 747 219 47 47 chr6 5722543 5722775 -183556779 - MLT1A2 LTR MaLR 0 365 134 283 95 24 0 chr6 5722775 5722817 -183556737 - MLT1A1 LTR MaLR 0 457 415 1333 99 0 0 chr6 5722818 5723010 -183556544 + L1MA2 LINE L1 6113 6304 0 1038 183 46 118 chr6 5723031 5723397 -183556157 - MLT1A1 LTR MaLR -25 340 1 2587 209 32 9 chr6 5723406 5723933 -183555621 - MLT1A1-int LTR MaLR -1 1734 1196 1181 197 13 26 chr6 5723935 5724169 -183555385 - MLT2B3 LTR ERVL -237 317 87 387 188 0 0 chr6 5724246 5724315 -183555239 - MLT2B3 LTR ERVL -484 70 2 765 128 78 35 chr6 5724318 5724459 -183555095 - MLT1A2 LTR MaLR -227 147 1 2237 122 0 0 chr6 5724604 5724908 -183554646 - AluSx SINE Alu -8 304 1 978 185 0 0 chr6 5724968 5725130 -183554424 - FAM SINE Alu -13 162 1 420 71 0 0 chr6 5725605 5725661 -183553893 + (TG)n Simple_repeat Simple_repeat 1 56 0 1886 77 0 0 chr6 5725661 5725883 -183553671 - AluSq SINE Alu -91 222 1 466 277 69 23 chr6 5725939 5726190 -183553364 - L1ME LINE L1 -317 5804 5584 234 0 0 0 chr6 5727785 5727811 -183551743 + (TC)n Simple_repeat Simple_repeat 1 26 0 366 340 39 0 chr6 5728985 5729188 -183550366 + L1ME3A LINE L1 5727 5937 -233 1552 194 154 19 chr6 5729207 5729254 -183550300 + MSTA LTR MaLR 1 40 -388 2301 130 13 24 chr6 5729254 5729632 -183549922 + THE1C LTR MaLR 1 374 -1 1552 194 154 19 chr6 5729632 5729961 -183549593 + MSTA LTR MaLR 40 428 0 9868 160 25 2 chr6 5729961 5731574 -183547980 + THE1C-int LTR MaLR 1 1650 -1 1913 170 154 0 chr6 5731581 5731952 -183547602 + MSTA LTR MaLR 1 428 0 315 263 0 40 chr6 5732124 5732223 -183547331 + L1MC5 LINE L1 7847 7941 -20 266 232 21 0 chr6 5733074 5733169 -183546385 + CT-rich Low_complexity Low_complexity 1 97 0 225 329 102 7 chr6 5733242 5733379 -183546175 + L2 LINE L2 3121 3270 -2 576 116 0 0 chr6 5733380 5733475 -183546079 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 4558 184 15 3 chr6 5733673 5734551 -183545003 + L1MB3 LINE L1 5273 6160 -23 1044 216 73 85 chr6 5735089 5735468 -183544086 + MLT2D LTR ERVL 1 376 -38 225 0 0 0 chr6 5735468 5735493 -183544061 + (CA)n Simple_repeat Simple_repeat 2 26 0 1044 216 73 85 chr6 5735493 5735524 -183544030 + MLT2D LTR ERVL 376 406 -8 314 232 77 97 chr6 5735691 5735898 -183543656 - L2 LINE L2 -217 3055 2853 1914 201 40 25 chr6 5736145 5736671 -183542883 + MER74A LTR ERVL 1 534 -24 13421 115 37 16 chr6 5737017 5739172 -183540382 - Tigger1 DNA MER2_type -219 2199 1 4194 145 26 0 chr6 5743237 5743926 -183535628 - L1MC1 LINE L1 -5 6328 5622 522 266 40 40 chr6 5743953 5744126 -183535428 + MER5B DNA MER1_type 4 176 -2 326 222 16 0 chr6 5744275 5744338 -183535216 + L1MCa LINE L1 2005 2068 -4358 366 23 0 0 chr6 5744355 5744398 -183535156 + (GA)n Simple_repeat Simple_repeat 2 44 0 1743 133 0 72 chr6 5744398 5744545 -183535009 - AluJo SINE Alu -40 272 155 2055 107 0 38 chr6 5744545 5744835 -183534719 - AluSg SINE Alu -12 298 20 1743 133 0 72 chr6 5744835 5744980 -183534574 - AluJo SINE Alu -157 155 1 2223 89 0 3 chr6 5745405 5745687 -183533867 - AluSg SINE Alu -16 294 14 273 311 10 10 chr6 5746011 5746114 -183533440 + C-rich Low_complexity Low_complexity 1 103 0 4641 177 17 6 chr6 5747153 5748039 -183531515 + L1MB3 LINE L1 5273 6168 -15 2257 99 3 0 chr6 5749653 5749946 -183529608 - AluSq SINE Alu -19 294 1 257 0 30 0 chr6 5750115 5750148 -183529406 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4749 138 87 11 chr6 5750162 5750194 -183529360 + L1MA7 LINE L1 5282 5310 -981 2285 137 8 27 chr6 5750194 5750483 -183529071 + MER47A DNA MER2_type 1 283 -2040 2104 149 0 0 chr6 5750483 5750792 -183528762 - AluJb SINE Alu -3 309 1 2285 137 8 27 chr6 5750792 5750875 -183528679 + MER47A DNA MER2_type 283 366 0 4749 138 87 11 chr6 5750875 5751776 -183527778 + L1MA7 LINE L1 5310 6286 -5 411 260 31 8 chr6 5753935 5754062 -183525492 - MIR SINE MIR -109 153 24 293 238 60 46 chr6 5754238 5754389 -183525165 + Charlie7 DNA MER1_type 2444 2596 -16 318 239 12 153 chr6 5755002 5755165 -183524389 + MIR SINE MIR 117 256 -6 255 200 212 12 chr6 5755174 5755259 -183524295 + MIR SINE MIR 65 166 -96 317 95 0 0 chr6 5755262 5755304 -183524250 - 5S rRNA rRNA -79 42 1 564 332 45 7 chr6 5755376 5755611 -183523943 + MIR SINE MIR 17 259 -3 558 282 37 31 chr6 5755636 5755776 -183523778 - MIR SINE MIR -39 223 80 2034 133 41 0 chr6 5755776 5756070 -183523484 + AluSx SINE Alu 1 306 -6 558 282 37 31 chr6 5756070 5756092 -183523462 - MIR SINE MIR -182 80 60 1794 175 3 19 chr6 5756918 5757226 -183522328 + AluJb SINE Alu 2 304 -8 788 144 6 18 chr6 5757226 5757393 -183522161 + GA-rich Low_complexity Low_complexity 1 165 0 228 306 113 16 chr6 5757475 5757599 -183521955 + MIR SINE MIR 73 208 -54 269 189 11 111 chr6 5757876 5757966 -183521588 + MIR SINE MIR 82 162 -100 258 188 34 26 chr6 5758054 5758171 -183521383 + (TAA)n Simple_repeat Simple_repeat 1 118 0 6992 61 12 45 chr6 5759668 5760649 -183518905 - SVA Other Other -5 1381 433 5885 67 27 12 chr6 5760662 5761481 -183518073 - SVA Other Other -555 831 1 403 268 36 7 chr6 5761488 5761626 -183517928 - L1ME LINE L1 -538 5583 5442 2139 88 4 0 chr6 5761751 5762013 -183517541 + AluSq SINE Alu 1 263 -50 191 59 0 29 chr6 5762033 5762067 -183517487 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 360 185 15 0 chr6 5762850 5762915 -183516639 + MIR SINE MIR 82 147 -61 296 284 191 31 chr6 5763255 5763417 -183516137 - MIR SINE MIR -54 208 21 233 229 9 0 chr6 5763848 5763953 -183515601 + (AGGTG)n Simple_repeat Simple_repeat 5 110 0 211 240 16 0 chr6 5763967 5764092 -183515462 + (AGGTG)n Simple_repeat Simple_repeat 3 129 0 213 243 43 0 chr6 5764114 5764184 -183515370 + (AGGTG)n Simple_repeat Simple_repeat 3 75 0 503 289 64 6 chr6 5765139 5765295 -183514259 + MIR3 SINE MIR 37 201 -7 180 233 200 44 chr6 5766201 5766291 -183513263 + MIR SINE MIR 41 144 -118 2615 244 41 21 chr6 5766840 5767645 -183511909 - L1ME3A LINE L1 -76 6094 5274 403 252 132 38 chr6 5768531 5768690 -183510864 - L2 LINE L2 -1 3312 3139 1298 266 51 58 chr6 5769415 5770021 -183509533 - MLT1L LTR MaLR 0 615 14 302 241 198 19 chr6 5770405 5770541 -183509013 + MIR SINE MIR 14 176 -86 241 137 196 0 chr6 5770850 5770901 -183508653 - MLT1J1 LTR MaLR -385 61 1 182 321 38 0 chr6 5771123 5771176 -183508378 + L2 LINE L2 3205 3259 -13 400 228 117 0 chr6 5771456 5771601 -183507953 + LTR16C LTR ERVL 330 491 0 527 282 19 0 chr6 5772343 5772499 -183507055 + LTR16A LTR ERVL 111 269 -181 322 273 111 0 chr6 5772547 5772646 -183506908 + LTR16A LTR ERVL 341 450 0 388 293 76 19 chr6 5773018 5773175 -183506379 + L2 LINE L2 2503 2668 -646 387 361 47 0 chr6 5773752 5773943 -183505611 + L2 LINE L2 3106 3305 -8 254 312 192 16 chr6 5774522 5774647 -183504907 - MIR3 SINE MIR -29 179 33 204 242 15 15 chr6 5774671 5774737 -183504817 + CT-rich Low_complexity Low_complexity 2 67 0 21 36 0 0 chr6 5776099 5776127 -183503427 + AT_rich Low_complexity Low_complexity 1 28 0 993 261 92 11 chr6 5776629 5776974 -183502580 + MLT1J LTR MaLR 1 373 -138 1899 144 89 53 chr6 5776974 5777060 -183502494 - MLT2D LTR ERVL -2 518 437 243 0 0 0 chr6 5777060 5777087 -183502467 + (CA)n Simple_repeat Simple_repeat 2 28 0 1899 144 89 53 chr6 5777087 5777392 -183502162 - MLT2D LTR ERVL -83 437 38 1958 163 12 65 chr6 5777392 5777502 -183502052 + MLT1B LTR MaLR 1 115 -275 1919 90 12 102 chr6 5777502 5777834 -183501720 + AluSx SINE Alu 1 302 -10 1958 163 12 65 chr6 5777834 5778135 -183501419 + MLT1B LTR MaLR 115 390 0 1899 144 89 53 chr6 5778135 5778175 -183501379 - MLT2D LTR ERVL -482 38 1 313 327 170 44 chr6 5778305 5778757 -183500797 - L2 LINE L2 -570 2744 2236 310 326 28 14 chr6 5779371 5779515 -183500039 + MIR SINE MIR 109 254 -8 548 297 50 41 chr6 5780417 5780636 -183498918 - MIR SINE MIR -26 236 16 4748 134 7 67 chr6 5781612 5782559 -183496995 - L1MB3 LINE L1 -9 6174 5284 229 277 62 0 chr6 5782605 5782670 -183496884 - MIR SINE MIR -117 145 77 7632 37 0 0 chr6 5782701 5783957 -183495597 - L1PA5 LINE L1 0 6154 4900 6609 167 36 10 chr6 5784204 5784824 -183494730 + L1MA9 LINE L1 4022 4624 -1688 2178 140 0 0 chr6 5784824 5785124 -183494430 + AluSx SINE Alu 1 300 -12 6609 167 36 10 chr6 5785124 5786667 -183492887 + L1MA9 LINE L1 4624 6312 0 972 197 55 144 chr6 5786692 5787355 -183492199 + MLT1D LTR MaLR 14 505 0 563 225 110 0 chr6 5787460 5787633 -183491921 - MIR SINE MIR 0 262 71 405 185 12 12 chr6 5788177 5788258 -183491296 + L1MB1 LINE L1 5685 5765 -401 693 148 58 26 chr6 5788258 5788406 -183491148 + L1MB8 LINE L1 6018 6177 -1 1425 182 28 18 chr6 5789166 5789370 -183490184 + MER33 DNA MER1_type 1 201 -2384 2071 119 69 28 chr6 5789370 5789730 -183489824 + THE1C LTR MaLR 1 375 0 1425 182 28 18 chr6 5789730 5789856 -183489698 + MER33 DNA MER1_type 201 324 0 231 357 49 16 chr6 5790239 5790424 -183489130 - L2 LINE L2 -971 2343 2153 572 256 111 14 chr6 5790529 5790736 -183488818 + MLT1G LTR MaLR 61 287 -303 640 262 6 17 chr6 5790770 5790942 -183488612 + MLT1G LTR MaLR 421 590 0 190 287 178 0 chr6 5790945 5791046 -183488508 + MIR SINE MIR 134 252 -10 264 322 134 25 chr6 5791096 5791379 -183488175 - L3 LINE CR1 -256 1321 1008 717 319 58 25 chr6 5791429 5791705 -183487849 - L3 LINE CR1 -824 753 469 326 157 0 0 chr6 5791968 5792019 -183487535 + L1MB1 LINE L1 5817 5867 -301 4347 166 43 15 chr6 5792320 5793134 -183486420 + L1MA10 LINE L1 5487 6323 -11 1978 130 0 11 chr6 5793149 5793434 -183486120 - AluSx SINE Alu -22 290 9 213 156 0 22 chr6 5793620 5793665 -183485889 + T-rich Low_complexity Low_complexity 6 49 0 438 276 184 6 chr6 5793739 5793913 -183485641 + MIR SINE MIR 29 233 -29 195 292 91 136 chr6 5794205 5794359 -183485195 - MER5A DNA MER1_type 0 189 43 323 253 0 0 chr6 5794955 5795030 -183484524 - L1ME3A LINE L1 -311 5859 5785 461 239 26 9 chr6 5795044 5795157 -183484397 - L1MA10 LINE L1 -2 6332 6218 663 252 47 51 chr6 5795220 5795474 -183484080 - L1ME3A LINE L1 -393 5777 5525 824 286 118 18 chr6 5795487 5795945 -183483609 - L1ME3A LINE L1 -1692 4454 3951 180 246 185 0 chr6 5796113 5796178 -183483376 - L2 LINE L2 0 3313 3237 844 304 101 7 chr6 5796411 5796849 -183482705 - L3 LINE CR1 -2 1575 1097 181 339 0 0 chr6 5797308 5797364 -183482190 + MIR SINE MIR 78 133 -129 1855 168 61 82 chr6 5798781 5799075 -183480479 - MLT1C LTR MaLR 0 467 183 2061 120 0 49 chr6 5799075 5799401 -183480153 - AluSg SINE Alu 0 310 1 1855 168 61 82 chr6 5799401 5799547 -183480007 - MLT1C LTR MaLR -284 183 36 234 318 64 0 chr6 5799720 5799830 -183479724 + L3b LINE CR1 1239 1355 -228 279 0 0 0 chr6 5800325 5800356 -183479198 + (CA)n Simple_repeat Simple_repeat 2 32 0 555 340 40 8 chr6 5800652 5801005 -183478549 - LTR16C LTR ERVL 0 491 128 725 152 0 0 chr6 5801249 5801348 -183478206 + FLAM_A SINE Alu 1 99 -43 1019 345 62 24 chr6 5801639 5802314 -183477240 - ERVL LTR ERVL -719 5045 4345 26 0 0 0 chr6 5802330 5802356 -183477198 + AT_rich Low_complexity Low_complexity 1 26 0 2235 303 66 40 chr6 5802362 5804559 -183474995 - ERVL LTR ERVL -1536 4228 1902 690 354 97 8 chr6 5804851 5805224 -183474330 - ERVL LTR ERVL -3531 1465 1060 2395 94 0 0 chr6 5805958 5806265 -183473289 + AluY SINE Alu 1 307 -4 250 234 73 40 chr6 5806524 5806648 -183472906 + L1ME LINE L1 40 167 -5903 347 234 0 13 chr6 5806886 5806963 -183472591 + L2 LINE L2 3229 3304 -9 409 227 62 31 chr6 5807217 5807345 -183472209 + MIR SINE MIR 65 196 -66 246 242 65 0 chr6 5807347 5807409 -183472145 - L2 LINE L2 -1 3312 3247 275 209 166 92 chr6 5807413 5807576 -183471978 - L2 LINE L2 0 3313 3139 1362 171 23 5 chr6 5807576 5807989 -183471565 + MLT2B2 LTR ERVL 1 515 0 597 292 50 7 chr6 5809630 5809907 -183469647 - L1ME4a LINE L1 -1 6120 5832 1077 291 93 39 chr6 5809935 5810737 -183468817 + L2 LINE L2 2461 3308 -5 386 244 123 40 chr6 5810738 5810933 -183468621 - L1M2 LINE L1 -334 5787 5596 43276 33 22 13 chr6 5810941 5816708 -183462846 - L1PA2 LINE L1 -2 6153 321 1461 18 0 0 chr6 5816708 5816873 -183462681 - AluYb8 SINE Alu 0 318 154 43276 33 22 13 chr6 5816873 5817195 -183462359 - L1PA2 LINE L1 -5834 321 4 631 284 89 4 chr6 5817808 5818044 -183461510 - MIR SINE MIR -3 259 4 1919 212 128 38 chr6 5818058 5818582 -183460972 - MLT1G LTR MaLR -6 584 14 543 128 0 64 chr6 5818586 5818680 -183460874 - L1MC1 LINE L1 -6 6327 6240 2245 94 17 7 chr6 5818690 5818989 -183460565 - AluSc SINE Alu 0 309 8 614 305 28 59 chr6 5820158 5820494 -183459060 + MLT1I LTR MaLR 64 390 -19 1079 261 5 0 chr6 5820494 5820712 -183458842 + MER58A DNA MER1_type 4 222 -2 614 305 28 59 chr6 5820712 5820732 -183458822 + MLT1I LTR MaLR 390 409 0 189 235 0 0 chr6 5820844 5820878 -183458676 - L2 LINE L2 -14 3258 3225 189 0 0 0 chr6 5821530 5821551 -183458003 + (T)n Simple_repeat Simple_repeat 1 21 0 528 16 0 0 chr6 5822184 5822245 -183457309 + (CA)n Simple_repeat Simple_repeat 2 62 0 216 0 0 0 chr6 5822244 5822268 -183457286 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 428 191 57 77 chr6 5822541 5822724 -183456830 + MER58 DNA MER1_type 43 2419 -1 1992 268 77 70 chr6 5822746 5824900 -183454654 - HERV16 LTR ERVL -2762 2234 1 1312 253 93 23 chr6 5824907 5825303 -183454251 - LTR16A LTR ERVL -10 440 17 201 267 93 0 chr6 5825329 5825404 -183454150 + MIR SINE MIR 60 141 -67 260 236 112 22 chr6 5825413 5825502 -183454052 - L1ME4a LINE L1 -17 6104 6008 292 131 51 35 chr6 5825896 5825975 -183453579 + L1PB4 LINE L1 5684 5758 -396 205 228 25 0 chr6 5825985 5826064 -183453490 + (CA)n Simple_repeat Simple_repeat 1 81 0 2267 128 56 11 chr6 5826064 5826422 -183453132 + L1PB4 LINE L1 5783 6156 0 758 251 25 5 chr6 5826509 5826708 -183452846 - L1ME4a LINE L1 -393 5728 5526 2134 118 0 10 chr6 5827924 5828221 -183451333 - AluSq SINE Alu -19 294 1 180 77 0 0 chr6 5828312 5828338 -183451216 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 279 122 0 0 chr6 5828434 5828483 -183451071 + (GA)n Simple_repeat Simple_repeat 2 50 0 605 298 164 3 chr6 5828790 5829119 -183450435 - Tigger8 DNA MER2_type -174 492 111 189 0 0 0 chr6 5829166 5829187 -183450367 + (TG)n Simple_repeat Simple_repeat 2 22 0 1204 202 68 46 chr6 5830495 5830983 -183448571 - MLT1F LTR MaLR 0 567 20 284 184 79 26 chr6 5831193 5831269 -183448285 + LTR50 LTR ERVL 716 795 0 328 298 0 11 chr6 5831345 5831439 -183448115 - MIR SINE MIR -121 141 49 2903 155 33 26 chr6 5831892 5832383 -183447171 + L1PA15 LINE L1 5670 6163 -2 358 348 123 40 chr6 5832819 5833046 -183446508 - MIR SINE MIR -1 261 16 393 291 10 0 chr6 5833497 5833600 -183445954 + MER5A DNA MER1_type 67 170 -19 562 271 66 17 chr6 5833661 5833842 -183445712 + MIR SINE MIR 34 223 -39 21 36 0 0 chr6 5834222 5834250 -183445304 + AT_rich Low_complexity Low_complexity 1 28 0 1158 291 49 51 chr6 5834734 5835163 -183444391 - L2 LINE L2 -66 3247 2832 2454 185 17 77 chr6 5835163 5835697 -183443857 - MLT1D LTR MaLR -1 504 3 1158 291 49 51 chr6 5835697 5836076 -183443478 - L2 LINE L2 -481 2832 2454 246 214 54 0 chr6 5836293 5836349 -183443205 - LTR50 LTR ERVL 0 795 737 323 231 100 23 chr6 5836349 5836479 -183443075 - L1MEc LINE L1 -4544 1852 1713 882 49 0 0 chr6 5836503 5836605 -183442949 - L1PA7 LINE L1 -3 6151 6050 372 261 22 0 chr6 5836607 5836699 -183442855 - L2 LINE L2 -644 2670 2577 32713 101 7 23 chr6 5836731 5843099 -183436455 - L1PA7 LINE L1 -108 6361 4 1074 255 50 61 chr6 5843104 5843326 -183436228 - L1MEc LINE L1 -4678 1718 1495 1627 174 44 7 chr6 5843326 5843624 -183435930 - 7SLRNA srpRNA srpRNA -9 311 3 1074 255 50 61 chr6 5843624 5843943 -183435611 - L1MEc LINE L1 -4901 1495 1183 355 220 28 37 chr6 5843958 5844067 -183435487 + LTR16B LTR ERVL 355 462 -2 1155 300 29 40 chr6 5844101 5844657 -183434897 - L1MEc LINE L1 -5637 759 210 1028 175 0 16 chr6 5844806 5845000 -183434554 + L1MB7 LINE L1 4976 5166 -980 2235 173 41 12 chr6 5845000 5845416 -183434138 + L1MB3 LINE L1 5749 6176 -7 4125 202 45 12 chr6 5845437 5846433 -183433121 + L1MB7 LINE L1 5149 6173 -11 280 222 127 16 chr6 5846472 5846535 -183433019 + L2 LINE L2 3204 3273 -40 21 0 0 0 chr6 5846625 5846646 -183432908 + AT_rich Low_complexity Low_complexity 1 21 0 572 285 80 10 chr6 5846821 5847021 -183432533 + MIR SINE MIR 48 261 -1 321 26 0 0 chr6 5847683 5847722 -183431832 + U5 snRNA snRNA 6 44 -72 196 298 0 0 chr6 5848395 5848442 -183431112 + MIR SINE MIR 215 261 -1 423 202 0 0 chr6 5848446 5848540 -183431014 + (CCA)n Simple_repeat Simple_repeat 1 94 0 436 346 39 43 chr6 5848713 5849146 -183430408 + L3 LINE CR1 358 866 -711 2494 167 55 4 chr6 5849229 5849685 -183429869 + L1MD1 LINE L1 5565 6043 -199 1525 213 66 26 chr6 5849685 5850032 -183429522 - MSTD LTR MaLR 0 396 36 1083 163 41 5 chr6 5850039 5850230 -183429324 + L1MD1 LINE L1 6039 6237 -1 198 0 0 0 chr6 5850230 5850252 -183429302 + (CA)n Simple_repeat Simple_repeat 1 22 0 837 325 45 3 chr6 5850274 5850560 -183428994 + L3 LINE CR1 976 1273 -304 2156 162 34 3 chr6 5851034 5851386 -183428168 - MLT1A1 LTR MaLR 0 365 3 1741 189 0 3 chr6 5852221 5852713 -183426841 - AluJo SINE Alu 0 312 1 530 289 0 7 chr6 5853010 5853145 -183426409 - MER94 DNA DNA 0 134 1 251 231 70 124 chr6 5853633 5853819 -183425735 + L2 LINE L2 3015 3190 -82 199 274 20 0 chr6 5854368 5854419 -183425135 - L2 LINE L2 -5 3267 3216 1318 234 80 27 chr6 5854556 5855060 -183424494 + MLT1E LTR MaLR 102 593 0 685 257 50 94 chr6 5855108 5855470 -183424084 + LTR16A LTR ERVL 105 450 0 222 310 0 14 chr6 5855670 5855741 -183423813 - MIR3 SINE MIR -27 181 112 310 299 0 0 chr6 5856188 5856275 -183423279 - MIR SINE MIR -26 236 150 1907 188 39 39 chr6 5857147 5857562 -183421992 - MLT1D LTR MaLR 0 505 91 870 250 94 58 chr6 5858361 5858721 -183420833 - MLT1J2 LTR MaLR 0 450 78 347 231 34 60 chr6 5859983 5860100 -183419454 + MIR SINE MIR 49 162 -100 925 313 63 11 chr6 5860496 5860969 -183418585 + L2 LINE L2 2014 2511 -803 238 275 165 0 chr6 5861405 5861514 -183418040 + HsTC2 DNA Tc2 1 127 -1771 2779 208 59 0 chr6 5861530 5862121 -183417433 + HsTC2 DNA Tc2 1273 1898 0 215 289 132 18 chr6 5862253 5862367 -183417187 + L2 LINE L2 3187 3313 0 65 74 0 0 chr6 5863830 5863965 -183415589 + AT_rich Low_complexity Low_complexity 1 135 0 489 272 43 19 chr6 5863987 5864149 -183415405 - MIR3 SINE MIR -9 199 34 357 278 75 100 chr6 5864292 5864379 -183415175 - Charlie8 DNA MER1_type -106 235 147 1747 160 3 39 chr6 5864379 5864685 -183414869 - AluJb SINE Alu 0 312 18 357 278 75 100 chr6 5864685 5864838 -183414716 - Charlie8 DNA MER1_type -194 147 1 2065 109 0 7 chr6 5864856 5865202 -183414352 + AluSg SINE Alu 1 344 0 635 246 78 47 chr6 5865929 5866161 -183413393 - Charlie8 DNA MER1_type -2177 240 2 356 311 20 27 chr6 5867467 5867615 -183411939 + L2 LINE L2 2343 2489 -825 442 214 127 8 chr6 5867732 5867858 -183411696 - MER103 DNA DNA -7 159 19 257 358 45 11 chr6 5868013 5868192 -183411362 + L2 LINE L2 2601 2785 -529 1024 238 135 67 chr6 5868329 5868855 -183410699 + L1MEc LINE L1 1297 1858 -4538 9817 109 8 0 chr6 5868948 5870223 -183409331 - HSMAR1 DNA Mariner 0 1287 3 1719 100 4 21 chr6 5871306 5871547 -183408007 + AluSc SINE Alu 63 299 -10 2294 136 87 0 chr6 5873502 5873893 -183405661 - MSTB1 LTR MaLR 0 432 8 435 344 60 5 chr6 5875435 5875650 -183403904 - Charlie8 DNA MER1_type -2136 281 55 309 305 181 41 chr6 5876981 5877446 -183402108 + L2 LINE L2 2446 2975 -339 302 279 52 19 chr6 5878860 5879014 -183400540 + L1MC4a LINE L1 5768 5926 -1882 282 298 25 19 chr6 5879193 5879351 -183400203 + L1MC4a LINE L1 5768 5926 -1882 2201 116 0 0 chr6 5881218 5881521 -183398033 + AluY SINE Alu 1 303 -8 1211 157 101 28 chr6 5882318 5882566 -183396988 + L1MD3 LINE L1 7730 7995 0 183 235 20 0 chr6 5882858 5882909 -183396645 + L2 LINE L2 3220 3271 -1 727 110 20 0 chr6 5883623 5883723 -183395831 + AluSg/x SINE Alu 203 304 -5 190 311 33 82 chr6 5884124 5884246 -183395308 + MIR SINE MIR 30 145 -63 284 314 137 10 chr6 5884304 5884406 -183395148 + MIR SINE MIR 30 144 -64 283 283 43 0 chr6 5885951 5886043 -183393511 - MIR SINE MIR -13 249 154 467 57 71 0 chr6 5886044 5886114 -183393440 - AluSp/q SINE Alu -12 301 227 246 61 0 0 chr6 5886114 5886147 -183393407 - Alu SINE Alu -269 33 1 314 352 110 0 chr6 5886149 5886294 -183393260 - MIR SINE MIR -100 162 2 391 285 86 56 chr6 5887484 5887821 -183391733 - MLT1I LTR MaLR 0 409 63 213 154 0 0 chr6 5889505 5889544 -183390010 + (TA)n Simple_repeat Simple_repeat 1 39 0 218 208 21 0 chr6 5889647 5889695 -183389859 - L2 LINE L2 0 3313 3265 2370 85 0 16 chr6 5890061 5890377 -183389177 - AluY SINE Alu 0 311 1 309 229 16 41 chr6 5891001 5891129 -183388425 - MIR SINE MIR -18 190 67 2129 115 3 3 chr6 5891130 5891416 -183388138 + AluSx SINE Alu 1 286 -26 328 116 261 0 chr6 5891437 5891506 -183388048 + L1PA14 LINE L1 6075 6161 0 23 33 0 0 chr6 5892066 5892096 -183387458 + AT_rich Low_complexity Low_complexity 1 30 0 423 271 57 36 chr6 5892409 5892549 -183387005 + MIR SINE MIR 2 144 -118 1417 13 0 7 chr6 5893089 5893244 -183386310 + L1PA6 LINE L1 5995 6148 -6 789 189 24 18 chr6 5893363 5893532 -183386022 + MER5B DNA MER1_type 7 176 -2 426 278 23 79 chr6 5894082 5894272 -183385282 - MIR SINE MIR -60 148 11 1227 206 39 123 chr6 5894576 5895063 -183384491 + L1MC5 LINE L1 6692 7122 -839 2217 85 3 10 chr6 5895063 5895368 -183384186 + AluSp SINE Alu 1 303 -10 1227 206 39 123 chr6 5895368 5895476 -183384078 + L1MC5 LINE L1 7122 7237 -724 277 219 55 0 chr6 5895623 5895696 -183383858 + L1MC5 LINE L1 7311 7387 -574 25 0 0 0 chr6 5895948 5895973 -183383581 + AT_rich Low_complexity Low_complexity 1 25 0 538 288 100 4 chr6 5896274 5896503 -183383051 + L2 LINE L2 1452 1702 -1612 659 184 14 35 chr6 5896512 5896653 -183382901 + L1PA16 LINE L1 6027 6164 -2 468 218 29 24 chr6 5896931 5897101 -183382453 + L1 LINE L1 3128 3298 -2848 745 231 13 70 chr6 5899412 5899636 -183379918 + L1 LINE L1 3289 3493 -2653 875 165 0 0 chr6 5899636 5899769 -183379785 + FLAM_A SINE Alu 1 133 0 745 231 13 70 chr6 5899769 5899842 -183379712 + L1 LINE L1 3493 3569 -2577 2853 128 5 25 chr6 5900067 5900139 -183379415 + MER83 LTR ERV1 1 73 -375 2070 100 0 77 chr6 5900139 5900478 -183379076 + AluSq SINE Alu 1 313 0 2853 128 5 25 chr6 5900478 5900844 -183378710 + MER83 LTR ERV1 73 430 -18 353 364 102 62 chr6 5900897 5901172 -183378382 + L2 LINE L2 2985 3270 -2 2004 95 0 7 chr6 5901986 5902313 -183377241 + AluSc SINE Alu 1 325 0 1767 242 122 33 chr6 5902394 5902930 -183376624 - MLT1E2 LTR MaLR 0 626 34 2154 102 10 0 chr6 5902930 5903225 -183376329 + AluSg SINE Alu 1 298 -12 1767 242 122 33 chr6 5903225 5903263 -183376291 - MLT1E2 LTR MaLR -592 34 1 317 313 68 68 chr6 5904110 5904273 -183375281 + L1ME4a LINE L1 5827 5989 -132 398 228 0 22 chr6 5904882 5904974 -183374580 + FLAM_A SINE Alu 44 133 0 278 242 63 90 chr6 5905122 5905345 -183374209 - HAL1 LINE L1 -1153 1354 1138 1325 175 10 31 chr6 5905378 5905685 -183373869 + MLT1A1 LTR MaLR 1 373 -1 290 303 49 25 chr6 5905689 5905811 -183373743 - LTR16C LTR ERVL -158 333 209 21 36 0 0 chr6 5905900 5905928 -183373626 + AT_rich Low_complexity Low_complexity 1 28 0 556 183 48 48 chr6 5906070 5906196 -183373358 + L1MC4 LINE L1 7599 7724 -318 345 203 0 0 chr6 5907031 5907090 -183372464 - L2 LINE L2 0 3313 3255 1789 158 10 0 chr6 5907296 5907587 -183371967 + AluJo SINE Alu 1 294 -18 1143 194 19 0 chr6 5907680 5907891 -183371663 - MER20 DNA MER1_type -4 215 1 1884 141 7 0 chr6 5908446 5908736 -183370818 + AluSp SINE Alu 1 292 -21 364 281 71 52 chr6 5909034 5909244 -183370310 - L2 LINE L2 -228 3085 2872 615 278 139 4 chr6 5911061 5911291 -183368263 + MIR SINE MIR 2 262 0 495 231 62 36 chr6 5911561 5911759 -183367795 + LTR33A LTR ERVL 26 175 -348 1688 161 3 16 chr6 5912043 5912354 -183367200 + AluJo SINE Alu 1 307 -5 2571 219 15 9 chr6 5912448 5912983 -183366571 - MLT1F LTR MaLR -2 540 3 395 340 36 69 chr6 5913557 5914104 -183365450 - L2 LINE L2 -38 3234 2705 224 254 0 48 chr6 5914436 5914499 -183365055 - MIR SINE MIR -8 254 195 192 125 0 0 chr6 5914720 5914752 -183364802 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr6 5916195 5916219 -183363335 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1590 207 63 67 chr6 5916426 5916933 -183362621 - MLT1D LTR MaLR 0 505 1 610 279 56 23 chr6 5917030 5917245 -183362309 + MIR SINE MIR 39 260 -2 447 336 27 55 chr6 5917938 5918194 -183361360 + L1MC/D LINE L1 5511 5759 -2049 616 207 166 24 chr6 5918922 5919091 -183360463 - MIR SINE MIR -50 212 20 22 0 0 0 chr6 5922015 5922037 -183357517 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 5922841 5922871 -183356683 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr6 5923443 5923475 -183356079 + AT_rich Low_complexity Low_complexity 1 32 0 319 289 11 56 chr6 5924454 5924634 -183354920 + CT-rich Low_complexity Low_complexity 5 176 0 186 200 0 0 chr6 5925320 5925355 -183354199 + L2 LINE L2 3150 3184 -88 234 0 0 0 chr6 5925504 5925530 -183354024 + (T)n Simple_repeat Simple_repeat 1 26 0 219 322 0 41 chr6 5927537 5927658 -183351896 + CT-rich Low_complexity Low_complexity 1 116 0 183 194 28 0 chr6 5927844 5927880 -183351674 + L2 LINE L2 3276 3312 -1 189 0 0 0 chr6 5928369 5928390 -183351164 + (GGA)n Simple_repeat Simple_repeat 1 21 0 440 117 13 0 chr6 5931662 5931739 -183347815 + (GA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr6 5932348 5932380 -183347174 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 238 38 0 chr6 5932382 5932462 -183347092 + (CG)n Simple_repeat Simple_repeat 1 83 0 230 203 0 14 chr6 5932757 5932826 -183346728 + (CA)n Simple_repeat Simple_repeat 2 69 0 25 0 0 0 chr6 5934058 5934083 -183345471 + GC_rich Low_complexity Low_complexity 1 25 0 197 275 0 58 chr6 5934581 5934650 -183344904 + MIR3 SINE MIR 133 197 -11 2026 96 48 0 chr6 5935512 5935804 -183343750 + AluSq SINE Alu 1 306 -7 1192 241 68 51 chr6 5936041 5936451 -183343103 + L1MC4 LINE L1 7624 8040 -2 350 280 206 41 chr6 5936462 5936680 -183342874 + L1M4 LINE L1 4980 5233 -913 378 0 0 0 chr6 5936718 5936760 -183342794 + (CA)n Simple_repeat Simple_repeat 2 43 0 2154 271 101 24 chr6 5936838 5937717 -183341837 - L1MC4 LINE L1 -459 7583 6637 691 292 111 48 chr6 5937996 5938473 -183341081 - L1MEc LINE L1 -3445 3095 2649 1918 158 3 0 chr6 5938473 5938777 -183340777 + AluSx SINE Alu 1 305 -7 691 292 111 48 chr6 5938777 5939331 -183340223 - L1MEc LINE L1 -3891 2649 2025 571 307 112 68 chr6 5939333 5939618 -183339936 - L1MEc LINE L1 -4604 1936 1626 959 164 31 0 chr6 5939618 5939777 -183339777 - FRAM SINE Alu -2 164 1 571 307 112 68 chr6 5939777 5939901 -183339653 - L1MEc LINE L1 -4914 1626 1509 5879 146 28 9 chr6 5939931 5940434 -183339120 - L1MA9 LINE L1 0 6312 5820 285 89 0 0 chr6 5940434 5940479 -183339075 + (CA)n Simple_repeat Simple_repeat 1 45 0 5879 146 28 9 chr6 5940479 5941601 -183337953 - L1MA9 LINE L1 -492 5820 4655 7094 158 92 68 chr6 5941813 5942277 -183337277 - L1MC3 LINE L1 0 7785 7334 1256 190 99 74 chr6 5942277 5942640 -183336914 + MLT1A2 LTR MaLR 1 372 -2 7094 158 92 68 chr6 5942640 5942735 -183336819 - L1MC3 LINE L1 -451 7334 7243 272 250 0 25 chr6 5942735 5942815 -183336739 - MLT1F1 LTR MaLR -442 125 48 7094 158 92 68 chr6 5942815 5943834 -183335720 - L1MC3 LINE L1 -542 7243 6087 1475 162 38 22 chr6 5943958 5944272 -183335282 - MER33 DNA MER1_type 0 324 6 330 26 0 0 chr6 5945098 5945137 -183334417 + (TG)n Simple_repeat Simple_repeat 2 40 0 285 268 33 72 chr6 5945537 5945690 -183333864 + MIR SINE MIR 34 180 -82 2130 173 36 51 chr6 5946595 5947069 -183332485 + MLT1C LTR MaLR 1 467 0 341 100 0 17 chr6 5947675 5947735 -183331819 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 947 87 16 33 chr6 5947737 5947920 -183331634 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 594 75 0 0 chr6 5947925 5948005 -183331549 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1202 182 82 82 chr6 5948007 5948287 -183331267 - AluJo SINE Alu -32 280 1 1919 164 0 0 chr6 5948313 5948606 -183330948 - AluJb SINE Alu -19 293 1 182 194 21 161 chr6 5948913 5949006 -183330548 + MIR3 SINE MIR 122 201 -7 223 340 28 38 chr6 5949146 5949252 -183330302 - L2 LINE L2 -57 3215 3111 2039 171 89 39 chr6 5949342 5949782 -183329772 - MLT1C LTR MaLR 0 467 6 627 224 26 13 chr6 5950738 5950894 -183328660 + Charlie8 DNA MER1_type 102 259 -2158 198 103 0 0 chr6 5952354 5952383 -183327171 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 2807 77 66 16 chr6 5952591 5953018 -183326536 - LTR7 LTR ERV1 -2 448 1 2676 66 45 13 chr6 5953018 5953398 -183326156 - HERVH LTR ERV1 0 7713 7322 1426 115 23 9 chr6 5953396 5953613 -183325941 - HERVH LTR ERV1 -1894 5819 5600 * 4229 153 12 1 chr6 5953614 5954269 -183325285 - HERVH LTR ERV1 -2564 5149 4488 3479 105 10 2 chr6 5954267 5954771 -183324783 - HERVH LTR ERV1 -3714 3999 3492 * 888 143 27 0 chr6 5954761 5954908 -183324646 - HERVH LTR ERV1 -4423 3290 3140 * 17037 101 36 25 chr6 5954878 5957966 -183321588 - HERVH LTR ERV1 -4709 3004 1 2724 89 60 17 chr6 5957968 5958382 -183321172 - LTR7 LTR ERV1 -2 448 17 583 256 0 0 chr6 5959484 5959601 -183319953 - MER94 DNA DNA -2 132 16 773 180 6 0 chr6 5960711 5960878 -183318676 + (CAT)n Simple_repeat Simple_repeat 1 168 0 3441 67 2 7 chr6 5960880 5961330 -183318224 - LTR7 LTR ERV1 -2 448 1 213 94 0 0 chr6 5961331 5961363 -183318191 + (CAT)n Simple_repeat Simple_repeat 3 34 0 510 316 59 30 chr6 5961481 5961785 -183317769 + L3 LINE CR1 1251 1563 -14 1228 146 68 5 chr6 5961863 5962069 -183317485 + MER20 DNA MER1_type 1 219 0 12274 34 0 0 chr6 5962286 5964488 -183315066 - L1PA4 LINE L1 0 6155 3951 574 246 8 0 chr6 5964738 5964868 -183314686 - MER94 DNA DNA 0 134 4 374 279 147 35 chr6 5966066 5966305 -183313249 + MIR SINE MIR 2 255 -7 223 359 92 0 chr6 5966348 5966490 -183313064 + L2 LINE L2 3117 3271 -1 655 176 27 148 chr6 5966693 5966949 -183312605 + LTR16A1 LTR ERVL 1 225 -232 804 128 0 0 chr6 6017053 6017178 -183262376 + L1PA13 LINE L1 6039 6163 0 4580 243 51 35 chr6 6017205 6017901 -183261653 + L1M4 LINE L1 3181 3864 -2282 2140 111 3 0 chr6 6017901 6018199 -183261355 + AluSp SINE Alu 1 299 -14 4580 243 51 35 chr6 6018199 6018336 -183261218 + L1M4 LINE L1 3864 3997 -2149 2353 84 3 0 chr6 6018336 6018645 -183260909 + AluY SINE Alu 1 310 -1 4580 243 51 35 chr6 6018645 6019663 -183259891 + L1M4 LINE L1 3997 5063 -1083 249 275 0 0 chr6 6019698 6019789 -183259765 + L1MC4 LINE L1 6614 6704 -1338 765 166 0 0 chr6 6019911 6020056 -183259498 - AluY SINE Alu 0 311 167 261 267 23 23 chr6 6020647 6020733 -183258821 + MIR SINE MIR 55 140 -68 1481 262 173 6 chr6 6020804 6021527 -183258027 + L2 LINE L2 2461 3312 -1 329 229 64 9 chr6 6021524 6021633 -183257921 - MIR SINE MIR -85 177 63 * 2241 105 0 3 chr6 6021828 6022123 -183257431 - AluSx SINE Alu -18 294 1 2236 95 0 0 chr6 6022778 6023063 -183256491 - AluSx SINE Alu -6 306 22 253 250 0 0 chr6 6023386 6023470 -183256084 - L1MC4 LINE L1 -1339 6703 6620 1243 68 0 0 chr6 6023593 6023755 -183255799 - AluY SINE Alu 0 311 150 334 130 0 29 chr6 6023764 6023833 -183255721 + (TA)n Simple_repeat Simple_repeat 2 68 0 1449 185 46 60 chr6 6023833 6024287 -183255267 + L1ME2 LINE L1 5603 6050 -114 1197 282 153 7 chr6 6025072 6025677 -183253877 - L2 LINE L2 -6 3307 2612 4221 179 38 5 chr6 6027229 6028026 -183251528 - MER54A LTR ERVL -4 897 75 460 191 17 9 chr6 6028638 6028753 -183250801 - Charlie5 DNA MER1_type 0 2624 2509 * 1357 212 104 51 chr6 6028752 6029205 -183250349 - MLT1D LTR MaLR -28 477 1 774 159 6 38 chr6 6029206 6029388 -183250166 - MER33 DNA MER1_type -262 62 1 672 195 94 25 chr6 6029390 6029549 -183250005 + MER5B DNA MER1_type 5 174 -4 246 136 0 0 chr6 6029607 6029651 -183249903 + (TC)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr6 6029725 6029750 -183249804 + (TG)n Simple_repeat Simple_repeat 2 26 0 202 346 0 0 chr6 6029850 6029902 -183249652 - L2 LINE L2 -6 3266 3215 200 189 0 0 chr6 6030004 6030041 -183249513 + (CA)n Simple_repeat Simple_repeat 2 38 0 2035 179 16 40 chr6 6030941 6031365 -183248189 - MLT2D LTR ERVL 0 414 1 209 182 45 154 chr6 6031367 6031477 -183248077 + L2 LINE L2 3155 3252 -20 218 261 72 43 chr6 6032459 6032528 -183247026 + L2 LINE L2 3202 3272 0 614 233 126 6 chr6 6032598 6032757 -183246797 + MER5A DNA MER1_type 12 189 0 2750 125 28 0 chr6 6032889 6033320 -183246234 - L1PB3 LINE L1 -1 6153 5711 329 269 0 0 chr6 6034500 6034567 -183244987 + MER5A DNA MER1_type 9 75 -114 599 107 0 0 chr6 6034570 6034654 -183244900 + AluS SINE Alu 1 84 -229 182 208 21 0 chr6 6036260 6036308 -183243246 + GA-rich Low_complexity Low_complexity 4 52 0 466 266 31 44 chr6 6036909 6037091 -183242463 + MER5A DNA MER1_type 3 178 0 236 275 0 0 chr6 6039740 6039809 -183239745 - MER113 DNA MER1_type? -118 403 335 234 371 19 0 chr6 6039889 6039994 -183239560 + L2 LINE L2 2903 3009 -263 466 256 80 23 chr6 6040366 6040628 -183238926 - L1MC5 LINE L1 -48 7913 7637 22 56 0 0 chr6 6040628 6040664 -183238890 + AT_rich Low_complexity Low_complexity 1 36 0 5683 96 11 13 chr6 6040742 6041292 -183238262 - L1PB1 LINE L1 0 6151 5602 2271 83 3 23 chr6 6041292 6041593 -183237961 - AluSc SINE Alu -14 295 1 5683 96 11 13 chr6 6041593 6041937 -183237617 - L1PB1 LINE L1 -549 5602 5259 973 267 80 60 chr6 6042102 6042156 -183237398 - L1MEd LINE L1 -4868 1251 1200 2421 87 0 0 chr6 6042156 6042456 -183237098 - AluY SINE Alu -11 300 1 973 267 80 60 chr6 6042456 6043408 -183236146 - L1MEd LINE L1 -4919 1200 323 225 226 97 11 chr6 6043554 6043647 -183235907 - L1MEd LINE L1 -5941 178 78 435 288 161 15 chr6 6043691 6043965 -183235589 + L1MC4a LINE L1 5575 5888 -1920 24 0 0 0 chr6 6043997 6044021 -183235533 + AT_rich Low_complexity Low_complexity 1 24 0 2844 126 11 7 chr6 6044385 6044830 -183234724 - L1PA11 LINE L1 -1 6173 5727 603 59 24 0 chr6 6045621 6045706 -183233848 - L1PA6 LINE L1 -2 6152 6066 17375 93 7 4 chr6 6045706 6048181 -183231373 - HERVK9 LTR ERVK -1810 4106 1625 4235 103 12 21 chr6 6048182 6048849 -183230705 - HERVK9 LTR ERVK -5255 661 1 2975 118 51 8 chr6 6048849 6049339 -183230215 - MER9 LTR ERVK 0 511 1 2839 3 0 16 chr6 6049375 6049691 -183229863 - AluYa5 SINE Alu 0 311 1 21315 126 13 18 chr6 6049691 6050220 -183229334 - L1P LINE L1 -2530 3616 3086 2290 113 0 6 chr6 6050220 6050531 -183229023 - AluY SINE Alu -2 309 1 21315 126 13 18 chr6 6050531 6053623 -183225931 - L1P LINE L1 -3060 3086 11 1516 169 66 0 chr6 6053842 6054115 -183225439 - AluY SINE Alu -20 291 1 324 242 78 13 chr6 6054552 6054705 -183224849 + L1ME LINE L1 5508 5670 -451 1442 247 53 40 chr6 6054750 6055280 -183224274 - MER74A LTR ERVL 0 558 22 689 190 27 2 chr6 6055283 6055454 -183224100 - L1MA4 LINE L1 -190 6114 5942 818 159 14 7 chr6 6055550 6055695 -183223859 + MER47A DNA MER2_type 5 150 -216 470 265 67 76 chr6 6055696 6056075 -183223479 + L1MEc LINE L1 2167 2499 -3716 874 297 73 38 chr6 6056105 6057413 -183222141 + L1MEc LINE L1 2714 4068 -2147 8549 145 11 6 chr6 6057429 6060073 -183219481 + L1MA2 LINE L1 3652 6304 0 33 0 0 0 chr6 6060076 6060109 -183219445 + AT_rich Low_complexity Low_complexity 1 33 0 328 343 41 0 chr6 6060271 6060516 -183219038 + L1MEc LINE L1 4864 5118 -1097 227 264 35 11 chr6 6060861 6060948 -183218606 - MLT1K LTR MaLR -15 573 485 675 214 7 89 chr6 6060974 6061194 -183218360 - MIR SINE MIR -35 227 33 234 0 0 0 chr6 6061270 6061296 -183218258 + (CA)n Simple_repeat Simple_repeat 2 27 0 385 335 76 57 chr6 6061443 6062023 -183217531 - L2 LINE L2 -396 2918 2328 644 246 214 23 chr6 6062036 6062423 -183217131 - LTR67 LTR ERVL 0 557 97 1510 164 15 107 chr6 6063412 6063814 -183215740 - MLT1A1 LTR MaLR 0 365 1 1769 215 11 5 chr6 6064614 6064982 -183214572 + MLT1A2 LTR MaLR 1 370 -4 16892 192 17 13 chr6 6065435 6066684 -183212870 - L1PA12 LINE L1 -298 7308 6065 2046 133 3 0 chr6 6066684 6066977 -183212577 + AluSx SINE Alu 1 294 -18 16892 192 17 13 chr6 6066977 6067132 -183212422 - L1PA12 LINE L1 -1541 6065 5912 306 0 0 0 chr6 6067132 6067166 -183212388 + (TTA)n Simple_repeat Simple_repeat 3 36 0 13518 28 0 0 chr6 6067166 6069518 -183210036 - L1PA4 LINE L1 -18 6137 3784 16892 192 17 13 chr6 6069518 6071805 -183207749 - L1PA12 LINE L1 -1694 5912 3585 2119 139 0 0 chr6 6071805 6072106 -183207448 - AluSx SINE Alu -11 301 1 16892 192 17 13 chr6 6072106 6073263 -183206291 - L1PA12 LINE L1 -4021 3585 2434 1126 198 0 25 chr6 6073344 6073581 -183205973 - L1PA12 LINE L1 -7350 231 1 6040 145 31 0 chr6 6073699 6075094 -183204460 - L1MA1 LINE L1 0 7721 6275 * 18956 168 38 36 chr6 6075093 6079877 -183199677 - L1MA1 LINE L1 -2691 4874 93 198 0 0 0 chr6 6079877 6079899 -183199655 + (TG)n Simple_repeat Simple_repeat 2 23 0 18956 168 38 36 chr6 6079899 6079979 -183199575 - L1MA1 LINE L1 -7472 93 15 339 125 0 0 chr6 6080022 6080078 -183199476 - MADE1 DNA Mariner -24 56 1 2151 243 46 35 chr6 6080083 6080768 -183198786 - L1MEc LINE L1 -3148 3067 2404 2224 132 0 0 chr6 6080768 6081078 -183198476 - AluSq SINE Alu -3 310 1 2151 243 46 35 chr6 6081078 6081297 -183198257 - L1MEc LINE L1 -3811 2404 2189 697 244 94 23 chr6 6081345 6081644 -183197910 - L1MEc LINE L1 -4356 2040 1721 21573 127 18 10 chr6 6081677 6086133 -183193421 - L1PA7 LINE L1 0 6154 1665 21 36 0 0 chr6 6086460 6086488 -183193066 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 7 chr6 6086579 6086881 -183192673 - AluSc SINE Alu -7 302 1 710 245 116 45 chr6 6086962 6087367 -183192187 - L1MC4 LINE L1 0 8042 7524 2055 174 133 4 chr6 6087388 6087860 -183191694 - L1MA4A LINE L1 -25 6278 5746 738 294 52 55 chr6 6087865 6088229 -183191325 - L1M2 LINE L1 -5874 975 613 251 360 11 0 chr6 6088332 6088421 -183191133 - L1M2 LINE L1 -6072 777 688 1832 188 35 0 chr6 6088421 6088767 -183190787 + MSTB LTR MaLR 1 358 -68 240 161 16 16 chr6 6088816 6088878 -183190676 + MSTB LTR MaLR 365 426 -2 274 136 0 51 chr6 6088880 6088939 -183190615 + MSTB-int LTR MaLR 1 56 -1595 6236 190 50 64 chr6 6088939 6090624 -183188930 + MER52A LTR ERV1 1 1754 -1 7379 172 70 18 chr6 6090626 6092145 -183187409 + MSTB-int LTR MaLR 54 1651 0 1715 184 7 0 chr6 6092145 6092450 -183187104 + MSTB LTR MaLR 1 307 -119 1503 201 14 3 chr6 6092449 6092737 -183186817 + MSTB LTR MaLR 136 426 0 * 1964 253 13 0 chr6 6092850 6093324 -183186230 - L1M2 LINE L1 -6368 481 2 2421 241 71 53 chr6 6093327 6094267 -183185287 - L1MC4a LINE L1 -348 7460 6504 2708 263 138 30 chr6 6094876 6095966 -183183588 - MER69 DNA AcHobo -1316 1210 4 6490 118 28 10 chr6 6096855 6098078 -183181476 - L1MA3 LINE L1 0 6305 5062 731 194 8 0 chr6 6098167 6098296 -183181258 - FLAM_A SINE Alu -3 130 1 244 297 54 47 chr6 6100164 6100312 -183179242 - L3 LINE CR1 -5 1572 1424 1758 267 75 24 chr6 6101694 6102244 -183177310 + MLT1E LTR MaLR 16 593 0 2141 139 0 0 chr6 6102258 6102559 -183176995 - AluSx SINE Alu -11 301 1 944 190 36 107 chr6 6102585 6102922 -183176632 - L1ME3A LINE L1 -101 6069 5757 643 214 53 0 chr6 6102926 6103057 -183176497 - L1ME3A LINE L1 -507 5663 5526 194 301 0 14 chr6 6104898 6104971 -183174583 + L3 LINE CR1 1142 1213 -364 2024 253 43 15 chr6 6105160 6105216 -183174338 - MLT1H1 LTR MaLR -1 554 501 994 153 84 11 chr6 6105216 6105406 -183174148 + L1MA4A LINE L1 6100 6303 0 2024 253 43 15 chr6 6105406 6105887 -183173667 - MLT1H1 LTR MaLR -54 501 2 218 293 0 32 chr6 6107293 6107416 -183172138 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 544 13 53 0 chr6 6107828 6107903 -183171651 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 268 278 41 0 chr6 6108261 6108358 -183171196 - L1MC4 LINE L1 0 8042 7942 16220 29 3 1 chr6 6108368 6111032 -183168522 - L1PA3 LINE L1 -2 6153 3486 333 220 264 0 chr6 6111040 6111131 -183168423 + MER117 DNA MER1_type 41 155 -42 348 287 20 34 chr6 6114060 6114221 -183165333 - MIR3 SINE MIR -87 175 15 3164 83 32 17 chr6 6114280 6114747 -183164807 + L1PB1 LINE L1 5678 6151 0 2724 156 4 28 chr6 6116290 6116797 -183162757 + L1MA6 LINE L1 5801 6295 -5 1764 208 11 19 chr6 6116821 6117196 -183162358 + MLT1A2 LTR MaLR 1 372 -2 638 298 146 22 chr6 6118225 6118594 -183160960 + L3 LINE CR1 1072 1486 -91 191 286 0 0 chr6 6118810 6118852 -183160702 + L2 LINE L2 3255 3296 -17 591 295 16 21 chr6 6118877 6119067 -183160487 + MIR SINE MIR 3 191 -71 271 303 50 0 chr6 6120023 6120122 -183159432 + MIR SINE MIR 41 144 -118 577 102 11 0 chr6 6120779 6120867 -183158687 + L1MA5 LINE L1 6206 6294 -6 209 386 16 16 chr6 6121346 6121473 -183158081 - MIR3 SINE MIR -44 164 38 1030 216 9 5 chr6 6121827 6122045 -183157509 - MER20 DNA MER1_type 0 219 1 272 253 62 88 chr6 6124133 6124327 -183155227 + MER3 DNA MER1_type 21 209 0 * 1059 183 0 11 chr6 6124327 6124362 -183155192 - MER3 DNA MER1_type -164 45 13 753 220 30 0 chr6 6124363 6124531 -183155023 - MIR SINE MIR -68 194 22 368 274 61 76 chr6 6124576 6124839 -183154715 - MIR SINE MIR -3 259 1 223 218 64 0 chr6 6125721 6125804 -183153750 + MIR SINE MIR 37 130 -78 2520 75 0 0 chr6 6126331 6126636 -183152918 - AluY SINE Alu -4 307 3 306 284 85 43 chr6 6126932 6127073 -183152481 - MER91A DNA MER1_type -30 166 20 2222 88 0 0 chr6 6127432 6127705 -183151849 + AluSx SINE Alu 1 273 -39 456 346 21 5 chr6 6128251 6128439 -183151115 - MIR SINE MIR -67 195 5 299 340 74 28 chr6 6128371 6128586 -183150968 + MIR SINE MIR 17 241 -21 * 4927 105 42 16 chr6 6128875 6129618 -183149936 - L1PA13 LINE L1 -6 6157 5396 660 84 176 8 chr6 6129618 6129737 -183149817 + L1PA13 LINE L1 5254 5392 -776 2137 103 0 3 chr6 6129744 6130046 -183149508 + L1PA14 LINE L1 5858 6158 -3 189 0 0 0 chr6 6130051 6130072 -183149482 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 413 203 17 34 chr6 6130232 6130409 -183149145 + CT-rich Low_complexity Low_complexity 5 178 0 736 256 39 17 chr6 6131623 6131857 -183147697 + MIR SINE MIR 15 253 -9 830 221 17 43 chr6 6132367 6132598 -183146956 + L1ME3 LINE L1 5937 6161 -1 180 0 0 0 chr6 6132870 6132890 -183146664 + (T)n Simple_repeat Simple_repeat 1 20 0 183 184 0 0 chr6 6132906 6132944 -183146610 + (CA)n Simple_repeat Simple_repeat 1 38 0 628 195 53 35 chr6 6134576 6134745 -183144809 + MER5B DNA MER1_type 6 177 -1 367 263 219 0 chr6 6134842 6134979 -183144575 + MER5A DNA MER1_type 16 182 -7 362 233 14 0 chr6 6135055 6135128 -183144426 - MER81 DNA DNA -40 74 1 1190 167 28 19 chr6 6135132 6135348 -183144206 + MER20B DNA MER1_type 2 219 0 2122 124 0 0 chr6 6136151 6136441 -183143113 + AluSx SINE Alu 19 308 -4 182 312 56 32 chr6 6137014 6137139 -183142415 - MIR SINE MIR -91 171 44 359 212 34 51 chr6 6137616 6137734 -183141820 - MER103 DNA DNA -47 119 4 442 267 0 0 chr6 6138315 6138431 -183141123 - MIR SINE MIR -10 252 137 325 277 75 0 chr6 6139436 6139530 -183140024 + L2 LINE L2 3178 3278 -35 243 231 0 0 chr6 6140294 6140346 -183139208 - MIR SINE MIR -10 252 201 289 380 72 0 chr6 6140753 6141172 -183138382 - L2 LINE L2 -1230 2084 1636 180 310 79 49 chr6 6142153 6142356 -183137198 + L2 LINE L2 2897 3105 -167 183 313 54 9 chr6 6143131 6143243 -183136311 + L2 LINE L2 2899 3015 -257 547 259 109 85 chr6 6144498 6144915 -183134639 + MLT1L LTR MaLR 110 611 -4 410 306 14 7 chr6 6145236 6145380 -183134174 + MIR SINE MIR 108 252 -10 206 229 0 21 chr6 6145498 6145546 -183134008 - MER5B DNA MER1_type -19 159 113 314 330 96 20 chr6 6146116 6146313 -183133241 - MIR SINE MIR -4 258 47 213 244 58 47 chr6 6146973 6147059 -183132495 + MER5B DNA MER1_type 2 88 -90 198 195 49 0 chr6 6147112 6147153 -183132401 + MIR SINE MIR 72 114 -148 43281 38 22 7 chr6 6147154 6153280 -183126274 - L1PA3 LINE L1 0 6172 1 462 315 89 52 chr6 6153872 6154551 -183125003 - L2 LINE L2 -92 3180 2446 202 205 0 0 chr6 6154826 6154865 -183124689 + (TG)n Simple_repeat Simple_repeat 1 39 0 503 328 51 0 chr6 6156834 6157011 -183122543 + MIR SINE MIR 5 190 -72 2210 123 0 0 chr6 6159426 6159719 -183119835 + AluSc SINE Alu 1 293 -16 251 368 46 33 chr6 6160582 6160734 -183118820 - L2 LINE L2 -1 3271 3118 331 198 74 0 chr6 6160742 6160823 -183118731 + MIR SINE MIR 164 250 -12 487 246 50 40 chr6 6161132 6161236 -183118318 - MIR SINE MIR -5 257 156 2544 46 0 13 chr6 6161236 6161539 -183118015 + AluY SINE Alu 1 299 -12 487 246 50 40 chr6 6161539 6161647 -183117907 - MIR SINE MIR -106 156 50 1758 159 57 0 chr6 6162313 6162596 -183116958 + AluJb SINE Alu 1 299 -13 216 0 0 0 chr6 6163732 6163756 -183115798 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 671 121 30 0 chr6 6163759 6163858 -183115696 - FLAM_C SINE Alu -27 116 15 920 169 31 73 chr6 6163972 6164233 -183115321 - L1MA7 LINE L1 0 6291 6042 272 301 21 11 chr6 6164401 6164494 -183115060 + L2 LINE L2 3175 3268 -4 1246 222 45 24 chr6 6165241 6165811 -183113743 + MLT1E1 LTR MaLR 9 645 -9 192 40 0 0 chr6 6165976 6166001 -183113553 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 205 153 0 85 chr6 6167804 6167863 -183111691 + A-rich Low_complexity Low_complexity 2 55 0 573 188 92 61 chr6 6168658 6168887 -183110667 - MER20B DNA MER1_type 0 783 548 6199 222 57 39 chr6 6168981 6170669 -183108885 + L1M4 LINE L1 14 1936 -1069 4113 190 31 18 chr6 6170837 6171970 -183107584 + L1MB7 LINE L1 4963 6107 -77 1746 147 25 21 chr6 6171971 6172256 -183107298 + AluJb SINE Alu 1 286 -26 23 0 0 0 chr6 6172351 6172374 -183107180 + AT_rich Low_complexity Low_complexity 1 23 0 403 109 16 0 chr6 6172374 6172438 -183107116 - Alu SINE Alu -15 297 233 1190 239 68 23 chr6 6172855 6173249 -183106305 - L1ME3A LINE L1 -10 6160 5749 549 264 43 40 chr6 6173249 6173268 -183106286 - L2 LINE L2 -311 3002 2985 2334 92 3 10 chr6 6173268 6173574 -183105980 + AluSq SINE Alu 1 304 -9 549 264 43 40 chr6 6173574 6173814 -183105740 - L2 LINE L2 -328 2985 2744 1758 113 55 24 chr6 6173914 6174205 -183105349 - THE1C LTR MaLR -75 300 1 1833 150 32 0 chr6 6174237 6174517 -183105037 - AluJb SINE Alu -23 289 1 2019 128 3 0 chr6 6174710 6174999 -183104555 - AluSc SINE Alu -19 290 1 1099 311 12 50 chr6 6175967 6176449 -183103105 - L2 LINE L2 0 3272 2809 1053 155 22 43 chr6 6176503 6176735 -183102819 - AluJo SINE Alu 0 312 86 314 242 62 0 chr6 6176786 6176914 -183102640 + AluSp SINE Alu 15 150 -153 961 101 0 0 chr6 6177045 6177164 -183102390 - AluSq/x SINE Alu -194 119 1 588 210 8 0 chr6 6177171 6177295 -183102259 - FLAM_C SINE Alu -10 133 9 2262 105 0 7 chr6 6177310 6177615 -183101939 - AluSx SINE Alu -9 303 1 387 127 0 0 chr6 6177625 6177688 -183101866 + (ATG)n Simple_repeat Simple_repeat 3 65 0 206 242 48 48 chr6 6178276 6178338 -183101216 + L2 LINE L2 3025 3086 -186 2170 110 3 3 chr6 6178700 6179000 -183100554 + AluSx SINE Alu 2 301 -11 1638 119 12 0 chr6 6179261 6179505 -183100049 + L1PA16 LINE L1 5792 6038 -128 1326 92 6 6 chr6 6179505 6179679 -183099875 + AluSq SINE Alu 1 174 -139 43787 35 24 1 chr6 6179780 6185650 -183093904 - L1PA3 LINE L1 -150 6005 1 352 272 243 6 chr6 6186097 6186266 -183093288 - MIR SINE MIR -34 228 20 2101 131 0 16 chr6 6186284 6186590 -183092964 + AluSx SINE Alu 1 301 -11 446 117 0 0 chr6 6186631 6186691 -183092863 + AluS SINE Alu 11 70 -239 1714 227 30 59 chr6 6186988 6187565 -183091989 - MER68 LTR ERV1 0 562 3 865 158 33 0 chr6 6188939 6189091 -183090463 - L1MB2 LINE L1 -3 6168 6012 515 284 0 16 chr6 6189103 6189286 -183090268 + (TG)n Simple_repeat Simple_repeat 1 180 0 219 69 0 0 chr6 6189984 6190013 -183089541 + (TG)n Simple_repeat Simple_repeat 2 30 0 447 256 141 0 chr6 6190074 6190230 -183089324 + MIR SINE MIR 75 252 -10 2144 60 26 0 chr6 6190548 6190813 -183088741 - AluY SINE Alu -39 272 1 316 178 0 109 chr6 6191983 6192084 -183087470 - L1MC4 LINE L1 -1339 6703 6614 711 227 99 147 chr6 6192207 6192771 -183086783 + MLT1H1 LTR MaLR 6 555 0 229 315 9 0 chr6 6193347 6193440 -183086114 - MIR SINE MIR -72 136 41 25 0 0 0 chr6 6195372 6195397 -183084157 + AT_rich Low_complexity Low_complexity 1 25 0 299 293 25 51 chr6 6195729 6195886 -183083668 - MER5A DNA MER1_type -36 153 1 2749 166 42 17 chr6 6196230 6196773 -183082781 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6198071 6198548 -183081006 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6199496 6199524 -183080030 + AT_rich Low_complexity Low_complexity 1 28 0 2173 102 0 3 chr6 6200485 6200780 -183078774 + AluSx SINE Alu 1 294 -18 317 261 48 106 chr6 6201762 6201901 -183077653 + MIR3 SINE MIR 22 149 -59 1954 128 3 23 chr6 6201901 6202206 -183077348 - AluSq SINE Alu -14 299 1 317 261 48 106 chr6 6202206 6202254 -183077300 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6202379 6202768 -183076786 + MLT1L LTR MaLR 163 580 -8 1981 135 3 10 chr6 6202806 6203109 -183076445 - AluSx SINE Alu -11 301 1 286 313 70 35 chr6 6204082 6204280 -183075274 - MIR SINE MIR -11 251 42 2248 127 50 14 chr6 6204787 6205149 -183074405 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6205563 6206228 -183073326 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6206434 6206460 -183073094 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6207416 6207492 -183072062 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6207566 6207864 -183071690 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6207864 6208170 -183071384 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6208170 6208273 -183071281 - L1ME LINE L1 -754 5367 5265 2230 4 0 4 chr6 6208704 6208977 -183070577 - AluYa5 SINE Alu 0 341 70 1117 139 19 48 chr6 6208982 6209191 -183070363 - MER49 LTR ERV1 -716 207 5 188 172 121 17 chr6 6209365 6209423 -183070131 - MIR SINE MIR -115 147 84 * 492 274 8 0 chr6 6209419 6209543 -183070011 + MIR SINE MIR 25 149 -113 689 240 116 25 chr6 6209562 6209971 -183069583 - LTR33A LTR ERVL -25 498 9 287 219 19 86 chr6 6210380 6210431 -183069123 + L2 LINE L2 3215 3259 -54 2003 128 4 0 chr6 6210431 6210748 -183068806 + AluSx SINE Alu 1 318 0 287 219 19 86 chr6 6210748 6210799 -183068755 + L2 LINE L2 3259 3312 -1 365 257 121 51 chr6 6210822 6211079 -183068475 + L2 LINE L2 2487 2761 -553 380 295 38 0 chr6 6211857 6211962 -183067592 - L2 LINE L2 -5 3308 3200 3816 143 5 0 chr6 6212950 6213503 -183066051 - MER41D LTR ERV1 0 557 2 300 205 63 87 chr6 6215388 6215515 -183064039 + MIR SINE MIR 18 141 -67 691 239 35 78 chr6 6215906 6216087 -183063467 - MER58A DNA MER1_type -2196 224 53 2266 79 4 0 chr6 6216087 6216400 -183063154 + AluY SINE Alu 1 314 0 691 239 35 78 chr6 6216400 6216447 -183063107 - MER58A DNA MER1_type -2367 53 5 256 297 126 18 chr6 6216826 6216937 -183062617 - MIR SINE MIR -79 183 61 2122 126 0 7 chr6 6217109 6217411 -183062143 + AluSq SINE Alu 2 301 -12 245 362 21 11 chr6 6217516 6217610 -183061944 - MIR SINE MIR -78 130 36 554 270 54 32 chr6 6217636 6217821 -183061733 + MIR SINE MIR 10 198 -64 532 238 71 8 chr6 6217843 6217969 -183061585 + L2 LINE L2 3179 3312 -1 1552 171 92 18 chr6 6219587 6219868 -183059686 + AluJo SINE Alu 1 302 0 393 100 17 0 chr6 6220097 6220157 -183059397 - MADE1 DNA Mariner -17 63 3 872 158 0 0 chr6 6220985 6221118 -183058436 - AluJo SINE Alu -178 134 2 416 293 246 6 chr6 6221332 6221653 -183057901 - L2 LINE L2 -877 2437 2040 1335 293 179 28 chr6 6222109 6223034 -183056520 - L2 LINE L2 -641 2673 1609 793 210 30 0 chr6 6223034 6223201 -183056353 - MER5B DNA MER1_type 0 178 7 324 299 104 44 chr6 6223196 6223514 -183056040 - L2 LINE L2 -1704 1610 1274 * 192 125 31 0 chr6 6224488 6224520 -183055034 + MER5B DNA MER1_type 15 47 -131 * 622 177 92 0 chr6 6224494 6224624 -183054930 - MER5A DNA MER1_type -21 168 27 534 157 14 71 chr6 6224626 6224766 -183054788 + AluJo SINE Alu 92 223 -89 2344 110 0 0 chr6 6224830 6225140 -183054414 + AluSg SINE Alu 1 310 0 214 292 0 0 chr6 6227020 6227068 -183052486 - L2 LINE L2 -48 3224 3177 194 286 0 18 chr6 6227719 6227775 -183051779 + L2 LINE L2 3213 3267 -5 246 32 0 0 chr6 6228059 6228090 -183051464 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 27 29 0 0 chr6 6230249 6230283 -183049271 + AT_rich Low_complexity Low_complexity 1 34 0 275 260 0 14 chr6 6230534 6230607 -183048947 - L2 LINE L2 -2 3270 3199 720 206 96 48 chr6 6230626 6230835 -183048719 + MIR SINE MIR 20 238 -24 827 265 83 54 chr6 6231582 6232088 -183047466 - L1MC4a LINE L1 -672 5479 5358 238 278 9 37 chr6 6232172 6232280 -183047274 - L1MC4a LINE L1 -1164 4982 4878 277 198 78 103 chr6 6232378 6232494 -183047060 - MLT1H LTR MaLR 0 549 437 317 248 186 9 chr6 6232714 6232827 -183046727 - MLT1H LTR MaLR -374 175 43 2022 118 56 0 chr6 6232933 6233220 -183046334 - AluSx SINE Alu -9 303 1 299 269 57 57 chr6 6233244 6233437 -183046117 - L1MC4a LINE L1 -1487 4659 4467 * 706 217 63 146 chr6 6233429 6234154 -183045400 - L1MC5 LINE L1 -21 7940 7276 379 173 0 27 chr6 6234284 6234359 -183045195 - L1MC5 LINE L1 -754 7207 7135 235 301 12 48 chr6 6238360 6238443 -183041111 - MIR3 SINE MIR -123 85 6 2066 102 47 4 chr6 6240573 6240848 -183038706 + AluSp SINE Alu 1 287 -26 670 249 34 28 chr6 6240921 6241098 -183038456 - MER20 DNA MER1_type -39 180 3 216 280 0 0 chr6 6241101 6241151 -183038403 + MIR SINE MIR 102 151 -111 313 340 29 0 chr6 6241268 6241371 -183038183 + MIR SINE MIR 39 144 -64 352 293 47 9 chr6 6242366 6242472 -183037082 - MIR SINE MIR -74 134 25 774 161 0 37 chr6 6242749 6242998 -183036556 + (ATGGTG)n Simple_repeat Simple_repeat 1 239 0 421 322 134 0 chr6 6243016 6243165 -183036389 - L2 LINE L2 0 3272 3104 214 333 129 11 chr6 6245478 6245571 -183033983 - MIR SINE MIR -125 137 34 202 318 34 23 chr6 6246247 6246335 -183033219 - L2 LINE L2 -1 3312 3224 3015 230 79 53 chr6 6246608 6247352 -183032202 - L1ME2 LINE L1 0 6164 5441 189 0 0 0 chr6 6247352 6247373 -183032181 + (TA)n Simple_repeat Simple_repeat 1 21 0 3015 230 79 53 chr6 6247373 6248188 -183031366 - L1ME2 LINE L1 -723 5441 4577 413 304 95 86 chr6 6248236 6248595 -183030959 - L2 LINE L2 0 3272 2911 2908 230 29 27 chr6 6249775 6251163 -183028391 - L1ME1 LINE L1 -5 6161 4776 989 241 126 34 chr6 6251209 6251741 -183027813 - HAL1b LINE L1 -221 1127 547 10875 194 75 3 chr6 6251784 6256501 -183023053 - L1PBa LINE L1 -1801 5061 6 308 197 61 0 chr6 6256515 6256581 -183022973 - HAL1b LINE L1 -1169 179 110 24 0 0 0 chr6 6256666 6256690 -183022864 + AT_rich Low_complexity Low_complexity 1 24 0 180 152 0 0 chr6 6256847 6256880 -183022674 + CT-rich Low_complexity Low_complexity 2 34 0 2073 124 10 0 chr6 6257334 6257624 -183021930 - AluSx SINE Alu -7 305 13 478 257 193 0 chr6 6259669 6259809 -183019745 - MER5A DNA MER1_type -2 187 21 1834 177 26 10 chr6 6260286 6260591 -183018963 + AluJo SINE Alu 1 310 -2 21 57 0 0 chr6 6261812 6261847 -183017707 + AT_rich Low_complexity Low_complexity 1 35 0 486 215 189 5 chr6 6264423 6264611 -183014943 - MIR SINE MIR -6 256 39 345 75 0 0 chr6 6265495 6265548 -183014006 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 238 119 7 chr6 6265983 6266126 -183013428 + MIR SINE MIR 8 166 -96 592 294 10 30 chr6 6266464 6266661 -183012893 + MIR SINE MIR 21 213 -49 235 276 17 0 chr6 6266747 6266805 -183012749 + G-rich Low_complexity Low_complexity 4 62 0 220 368 18 35 chr6 6268028 6268142 -183011412 + L2 LINE L2 3141 3252 -20 21 57 0 0 chr6 6270231 6270266 -183009288 + AT_rich Low_complexity Low_complexity 1 35 0 1801 180 26 10 chr6 6271486 6271791 -183007763 - AluJo SINE Alu -2 310 1 455 264 193 0 chr6 6272268 6272408 -183007146 + MER5A DNA MER1_type 21 187 -2 2050 128 10 0 chr6 6274453 6274742 -183004812 + AluSx SINE Alu 13 304 -8 180 152 0 0 chr6 6275196 6275229 -183004325 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6275386 6275410 -183004144 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6275495 6275561 -183003993 + HAL1b LINE L1 110 179 -1169 10878 194 74 3 chr6 6275575 6280294 -182999260 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6280337 6280869 -182998685 + HAL1b LINE L1 547 1127 -221 2930 229 29 27 chr6 6280915 6282303 -182997251 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6283483 6283842 -182995712 + L2 LINE L2 2911 3272 0 2769 232 55 50 chr6 6283946 6285467 -182994087 + L1ME2 LINE L1 4633 6164 0 204 318 34 23 chr6 6285739 6285827 -182993727 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6286503 6286596 -182992958 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6288920 6289069 -182990485 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6289087 6289336 -182990218 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6289613 6289719 -182989835 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6290714 6290817 -182988737 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6290934 6290984 -182988570 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6290996 6291164 -182988390 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6291237 6291512 -182988042 - AluSp SINE Alu -26 287 1 236 301 12 48 chr6 6293642 6293725 -182985829 + MIR3 SINE MIR 6 85 -123 339 173 0 27 chr6 6297726 6297801 -182981753 + L1MC5 LINE L1 7135 7207 -754 467 225 52 147 chr6 6297931 6298630 -182980924 + L1MC5 LINE L1 7276 7907 -54 299 269 34 63 chr6 6298666 6298841 -182980713 + L1MC4a LINE L1 4490 4659 -1487 2032 118 56 0 chr6 6298865 6299152 -182980402 + AluSx SINE Alu 1 303 -9 317 248 186 9 chr6 6299258 6299371 -182980183 + MLT1H LTR MaLR 43 175 -374 277 198 78 103 chr6 6299591 6299707 -182979847 + MLT1H LTR MaLR 437 549 0 827 265 83 54 chr6 6299997 6300503 -182979051 + L1MC4a LINE L1 5358 5479 -672 720 206 96 48 chr6 6301250 6301459 -182978095 - MIR SINE MIR -24 238 20 275 260 0 14 chr6 6301478 6301551 -182978003 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6301802 6301836 -182977718 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6303995 6304026 -182975528 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 194 286 0 18 chr6 6304310 6304366 -182975188 - L2 LINE L2 -5 3267 3213 214 292 0 0 chr6 6305017 6305065 -182974489 + L2 LINE L2 3177 3224 -48 2344 110 0 0 chr6 6306945 6307255 -182972299 - AluSg SINE Alu 0 310 1 534 157 14 71 chr6 6307320 6307460 -182972094 - AluJo SINE Alu -89 223 92 621 165 94 0 chr6 6307462 6307589 -182971965 + MER5A DNA MER1_type 27 165 -24 183 156 31 0 chr6 6307566 6307598 -182971956 - MER5B DNA MER1_type -131 47 15 * 324 299 104 44 chr6 6308572 6308890 -182970664 + L2 LINE L2 1274 1610 -1704 * 793 210 30 0 chr6 6308885 6309052 -182970502 + MER5B DNA MER1_type 7 178 0 1335 293 179 28 chr6 6309052 6309977 -182969577 + L2 LINE L2 1609 2673 -641 416 293 246 6 chr6 6310433 6310754 -182968800 + L2 LINE L2 2040 2437 -877 872 158 0 0 chr6 6310968 6311101 -182968453 + AluJo SINE Alu 2 134 -178 393 100 17 0 chr6 6311929 6311989 -182967565 + MADE1 DNA Mariner 3 63 -17 1493 165 90 18 chr6 6312221 6312500 -182967054 - AluJo SINE Alu -13 299 1 532 238 71 8 chr6 6314118 6314244 -182965310 - L2 LINE L2 -1 3312 3179 554 270 54 32 chr6 6314266 6314451 -182965103 - MIR SINE MIR -64 198 10 245 362 21 11 chr6 6314477 6314571 -182964983 + MIR SINE MIR 36 130 -78 2165 119 0 7 chr6 6314676 6314978 -182964576 - AluSq SINE Alu -12 301 2 256 297 126 18 chr6 6315150 6315261 -182964293 + MIR SINE MIR 61 183 -79 691 239 35 78 chr6 6315640 6315687 -182963867 + MER58A DNA MER1_type 5 53 -2367 2265 79 4 0 chr6 6315687 6316000 -182963554 - AluY SINE Alu 0 314 1 691 239 35 78 chr6 6316000 6316181 -182963373 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6316572 6316699 -182962855 - MIR SINE MIR -67 141 18 3816 143 5 0 chr6 6318584 6319137 -182960417 + MER41D LTR ERV1 2 557 0 380 295 38 0 chr6 6320125 6320230 -182959324 + L2 LINE L2 3200 3308 -5 379 257 158 46 chr6 6321008 6321292 -182958262 - L2 LINE L2 -553 2761 2446 287 219 19 86 chr6 6321289 6321340 -182958214 - L2 LINE L2 -1 3312 3268 * 2002 128 4 0 chr6 6321340 6321657 -182957897 - AluSx SINE Alu 0 318 1 287 219 19 86 chr6 6321657 6321708 -182957846 - L2 LINE L2 -45 3268 3215 689 240 116 25 chr6 6322117 6322526 -182957028 + LTR33A LTR ERVL 9 498 -25 492 274 8 0 chr6 6322545 6322669 -182956885 - MIR SINE MIR -113 149 25 188 172 121 17 chr6 6322665 6322723 -182956831 + MIR SINE MIR 84 147 -115 * 5399 169 10 24 chr6 6322897 6323111 -182956443 + MER49 LTR ERV1 5 220 -703 2230 4 0 4 chr6 6323111 6323354 -182956200 + AluYa5 SINE Alu 70 311 0 5399 169 10 24 chr6 6323354 6324071 -182955483 + MER49 LTR ERV1 220 923 0 1013 235 169 20 chr6 6324109 6324500 -182955054 - L2 LINE L2 -10 3303 2855 503 224 241 11 chr6 6324741 6324915 -182954639 - L2 LINE L2 -448 2866 2653 440 160 0 0 chr6 6327549 6327624 -182951930 + MLT1E2 LTR MaLR 552 626 0 2412 79 0 3 chr6 6327700 6328005 -182951549 + AluY SINE Alu 1 304 -7 760 259 97 69 chr6 6328119 6328439 -182951115 + L1MC4 LINE L1 6749 7077 -965 381 252 36 9 chr6 6328454 6328565 -182950989 + L1MC4a LINE L1 7161 7274 -534 1627 231 53 17 chr6 6328582 6328997 -182950557 + LTR16A LTR ERVL 16 445 -5 1978 230 68 23 chr6 6329000 6329527 -182950027 + L1MC4 LINE L1 7351 7901 -141 1654 108 0 22 chr6 6331018 6331249 -182948305 + AluSg/x SINE Alu 69 294 -18 3906 153 59 23 chr6 6331621 6332104 -182947450 + MER50 LTR ERV1 1 518 -216 1909 146 42 0 chr6 6332104 6332391 -182947163 + AluSx SINE Alu 1 299 -13 3906 153 59 23 chr6 6332391 6332604 -182946950 + MER50 LTR ERV1 518 722 -12 4821 161 31 43 chr6 6334029 6334971 -182944583 - L1MA7 LINE L1 -39 6252 5323 258 32 0 0 chr6 6335420 6335451 -182944103 + (CA)n Simple_repeat Simple_repeat 2 32 0 458 301 45 0 chr6 6336458 6336614 -182942940 + MER103 DNA DNA 4 166 0 516 341 131 34 chr6 6337258 6337938 -182941616 + L2 LINE L2 1606 2351 -963 388 283 62 14 chr6 6338015 6338160 -182941394 + MIR SINE MIR 41 192 -70 244 332 48 40 chr6 6338268 6338518 -182941036 + L2 LINE L2 2397 2648 -666 717 139 0 0 chr6 6339699 6339821 -182939733 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 383 58 0 0 chr6 6340053 6340105 -182939449 + L1PA15 LINE L1 6101 6152 -13 2754 72 69 8 chr6 6340124 6340501 -182939053 + MLT2A1 LTR ERVL 1 400 -44 281 197 14 0 chr6 6340501 6340572 -182938982 + (CA)n Simple_repeat Simple_repeat 2 73 0 328 148 0 0 chr6 6340572 6340626 -182938928 + MLT2A1 LTR ERVL 400 453 0 43423 36 22 1 chr6 6340732 6346757 -182932797 - L1PA3 LINE L1 0 6155 1 778 266 50 8 chr6 6347816 6348057 -182931497 + LTR16A LTR ERVL 200 450 0 2916 158 62 38 chr6 6348286 6348836 -182930718 - MER7C DNA MER2_type -39 563 1 312 306 60 75 chr6 6348898 6349150 -182930404 - L1M4 LINE L1 -1099 5047 4800 572 291 87 48 chr6 6349317 6349384 -182930170 - L1M4 LINE L1 -1528 4618 4555 1568 96 35 78 chr6 6349384 6349666 -182929888 - L1MA7 LINE L1 -10 6281 6012 572 291 87 48 chr6 6349666 6350395 -182929159 - L1M4 LINE L1 -1591 4555 3791 327 220 140 80 chr6 6350463 6350568 -182928986 + MER103 DNA DNA 2 120 -46 2027 143 7 3 chr6 6350568 6350869 -182928685 + AluSx SINE Alu 1 302 -10 327 220 140 80 chr6 6350869 6350913 -182928641 + MER103 DNA DNA 120 160 -6 192 279 66 142 chr6 6352318 6352501 -182927053 + MIR SINE MIR 74 242 -20 370 308 134 0 chr6 6352986 6353158 -182926396 + MIR SINE MIR 47 241 -21 1129 321 44 90 chr6 6353642 6354017 -182925537 - L3 LINE CR1 -7 1570 1179 2011 116 3 34 chr6 6354017 6354311 -182925243 - AluSx SINE Alu -27 285 1 1129 321 44 90 chr6 6354311 6354592 -182924962 - L3 LINE CR1 -398 1179 971 1742 136 0 39 chr6 6354592 6354872 -182924682 - AluSx SINE Alu -3 309 41 1129 321 44 90 chr6 6354872 6355195 -182924359 - L3 LINE CR1 -606 971 635 548 326 66 48 chr6 6355301 6355785 -182923769 - L2 LINE L2 -173 3099 2600 519 276 79 0 chr6 6356156 6356308 -182923246 + MER103 DNA DNA 1 164 -2 490 264 36 0 chr6 6356356 6356466 -182923088 + MIR SINE MIR 64 177 -85 207 100 0 0 chr6 6356492 6356522 -182923032 + (TTA)n Simple_repeat Simple_repeat 1 30 0 804 221 164 5 chr6 6356535 6356748 -182922806 + MIR SINE MIR 8 254 -8 209 139 42 14 chr6 6357572 6357644 -182921910 + (TA)n Simple_repeat Simple_repeat 2 75 0 335 126 82 0 chr6 6357657 6357816 -182921738 + (TA)n Simple_repeat Simple_repeat 1 172 0 243 163 43 21 chr6 6357905 6358046 -182921508 + (TA)n Simple_repeat Simple_repeat 1 144 0 2276 75 0 29 chr6 6358378 6358684 -182920870 + AluSc SINE Alu 1 297 -12 180 0 0 0 chr6 6359269 6359289 -182920265 + (T)n Simple_repeat Simple_repeat 1 20 0 2361 82 7 0 chr6 6359975 6360268 -182919286 - AluSq SINE Alu -18 295 1 273 301 58 122 chr6 6360434 6360810 -182918744 + L2 LINE L2 2920 3271 -1 585 0 0 0 chr6 6362067 6362132 -182917422 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr6 6362269 6362290 -182917264 + AT_rich Low_complexity Low_complexity 1 21 0 358 307 90 2 chr6 6362712 6362940 -182916614 - MIR SINE MIR -6 256 3 422 309 99 0 chr6 6364192 6364357 -182915197 - MIR3 SINE MIR -9 199 13 420 303 55 43 chr6 6365149 6365403 -182914151 - L2 LINE L2 -5 3308 3052 281 294 174 18 chr6 6365592 6365810 -182913744 + MARNA DNA Mariner 271 522 -64 202 275 0 29 chr6 6366818 6366887 -182912667 + C-rich Low_complexity Low_complexity 4 70 0 180 355 109 32 chr6 6367354 6367368 -182912186 + L2 LINE L2 1294 1305 -2009 1880 135 83 0 chr6 6367368 6367656 -182911898 - AluSx SINE Alu 0 312 1 180 355 109 32 chr6 6367656 6367861 -182911693 + L2 LINE L2 1305 1530 -1784 325 251 140 25 chr6 6368035 6368270 -182911284 + L2 LINE L2 1790 2051 -1263 619 351 11 24 chr6 6368284 6368666 -182910888 + L2 LINE L2 2175 2551 -763 281 316 95 30 chr6 6368673 6368841 -182910713 + L2 LINE L2 2654 2832 -482 698 199 33 7 chr6 6369931 6370082 -182909472 - LTR33A LTR ERVL 0 523 369 358 294 66 15 chr6 6370181 6370317 -182909237 - LTR33A LTR ERVL -318 205 63 2679 184 28 54 chr6 6370344 6370919 -182908635 - MER68 LTR ERV1 0 562 3 905 154 51 0 chr6 6372294 6372450 -182907104 - L1MB2 LINE L1 -3 6168 6005 499 290 0 16 chr6 6372458 6372641 -182906913 + (TG)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr6 6373339 6373372 -182906182 + (TG)n Simple_repeat Simple_repeat 2 34 0 492 256 141 0 chr6 6373433 6373589 -182905965 + MIR SINE MIR 75 252 -10 2206 53 23 0 chr6 6373906 6374172 -182905382 - AluY SINE Alu -39 272 1 329 178 0 109 chr6 6375342 6375443 -182904111 - L1MC4 LINE L1 -1339 6703 6614 707 227 99 147 chr6 6375566 6376130 -182903424 + MLT1H1 LTR MaLR 6 555 0 265 365 31 2 chr6 6376699 6376825 -182902729 - MIR SINE MIR -62 146 15 207 269 46 65 chr6 6377075 6377183 -182902371 - L2 LINE L2 -10 3303 3198 28 0 0 0 chr6 6378731 6378759 -182900795 + AT_rich Low_complexity Low_complexity 1 28 0 345 293 25 51 chr6 6379091 6379248 -182900306 - MER5A DNA MER1_type -36 153 1 2932 162 44 18 chr6 6379592 6380135 -182899419 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6381432 6381909 -182897645 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6382857 6382885 -182896669 + AT_rich Low_complexity Low_complexity 1 28 0 2199 99 0 3 chr6 6383844 6384138 -182895416 + AluSx SINE Alu 1 293 -19 302 266 48 106 chr6 6385120 6385259 -182894295 + MIR3 SINE MIR 22 149 -59 1931 130 3 26 chr6 6385259 6385566 -182893988 - AluSq SINE Alu -13 300 1 302 266 48 106 chr6 6385566 6385614 -182893940 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6385739 6386128 -182893426 + MLT1L LTR MaLR 163 580 -8 2063 128 0 10 chr6 6386166 6386470 -182893084 - AluSx SINE Alu -11 301 1 283 301 46 43 chr6 6387474 6387637 -182891917 - MIR SINE MIR -50 158 42 2248 127 50 14 chr6 6388144 6388506 -182891048 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6388920 6389585 -182889969 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6389791 6389817 -182889737 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6390773 6390849 -182888705 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6390923 6391221 -182888333 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6391221 6391527 -182888027 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6391527 6391630 -182887924 - L1ME LINE L1 -754 5367 5265 2434 103 0 0 chr6 6392061 6392402 -182887152 - AluSx SINE Alu 0 342 2 387 340 48 50 chr6 6393536 6393956 -182885598 - L1ME LINE L1 -1077 5069 4651 2005 200 100 21 chr6 6395261 6395740 -182883814 + L1MC4 LINE L1 7306 7822 -220 295 333 28 14 chr6 6395746 6395887 -182883667 - MLT1J LTR MaLR -360 151 9 2299 94 0 7 chr6 6397070 6397378 -182882176 + AluSg SINE Alu 1 306 -4 1235 171 34 41 chr6 6397992 6398261 -182881293 - AluJo SINE Alu -45 267 1 2008 141 0 7 chr6 6398521 6398825 -182880729 + AluSx SINE Alu 1 302 -10 274 113 75 30 chr6 6398852 6398985 -182880569 + (CA)n Simple_repeat Simple_repeat 1 139 0 423 0 0 0 chr6 6399208 6399255 -182880299 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chr6 6399814 6399842 -182879712 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 234 240 60 0 chr6 6399924 6400024 -182879530 + (TA)n Simple_repeat Simple_repeat 2 107 0 493 299 38 53 chr6 6400036 6400301 -182879253 - MIR SINE MIR -5 257 1 297 51 0 0 chr6 6400728 6400767 -182878787 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 170 94 0 chr6 6401365 6401418 -182878136 + MER53 DNA DNA 1 58 -131 503 189 134 0 chr6 6401456 6401583 -182877971 + MER53 DNA DNA 46 189 0 304 331 45 22 chr6 6402456 6402634 -182876920 + MIR SINE MIR 31 212 -50 2897 137 16 6 chr6 6404564 6405067 -182874487 - L1MC3 LINE L1 0 7785 7278 228 259 152 45 chr6 6405542 6405654 -182873900 - MIR SINE MIR -14 248 125 621 303 137 16 chr6 6406163 6406668 -182872886 + L1MC4a LINE L1 5264 5829 -1979 265 325 73 24 chr6 6409061 6409184 -182870370 - L2 LINE L2 0 3272 3144 1616 78 8 21 chr6 6409407 6409649 -182869905 + MER75B DNA T2_type 1 239 -4 377 177 13 0 chr6 6409876 6409955 -182869599 + (TA)n Simple_repeat Simple_repeat 2 81 0 2121 301 93 31 chr6 6409966 6411150 -182868404 - L2 LINE L2 -167 3146 1896 277 250 0 24 chr6 6411151 6411207 -182868347 + MER94 DNA DNA 4 57 -77 1506 208 33 43 chr6 6411207 6411687 -182867867 - MLT1F LTR MaLR 0 542 5 277 297 0 0 chr6 6411696 6411770 -182867784 + MER94 DNA DNA 61 134 0 262 182 0 0 chr6 6412013 6412057 -182867497 + MLT1K LTR MaLR 434 477 -111 1064 159 67 24 chr6 6413964 6414172 -182865382 - MER20 DNA MER1_type 0 219 3 437 264 50 0 chr6 6414240 6414361 -182865193 - MIR3 SINE MIR -44 164 38 240 59 0 0 chr6 6414487 6414521 -182865033 - MADE1 DNA Mariner -46 34 1 343 43 0 0 chr6 6414598 6414644 -182864910 - MADE1 DNA Mariner -34 46 1 813 73 0 0 chr6 6415148 6415257 -182864297 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 240 111 0 0 chr6 6415261 6415297 -182864257 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr6 6415720 6415751 -182863803 + AT_rich Low_complexity Low_complexity 1 31 0 273 355 41 86 chr6 6416109 6416377 -182863177 - L2 LINE L2 -92 3180 2925 208 321 0 0 chr6 6416665 6416718 -182862836 - MER5A DNA MER1_type 0 189 137 2495 175 50 2 chr6 6416718 6417214 -182862340 + L1MB3 LINE L1 5662 6181 -2 13902 197 15 4 chr6 6417291 6421739 -182857815 + L1P5 LINE L1 1818 6373 -494 377 290 95 6 chr6 6471760 6471929 -182807625 - L2 LINE L2 -874 2440 2257 1016 142 0 44 chr6 6471929 6472112 -182807442 + FRAM SINE Alu 1 172 -4 353 264 74 50 chr6 6472396 6472517 -182807037 + L2 LINE L2 3190 3313 0 308 174 14 0 chr6 6472580 6472649 -182806905 - L1MC4 LINE L1 -2 8040 7971 2376 77 0 3 chr6 6472672 6472971 -182806583 - AluY SINE Alu -13 298 1 2032 116 0 10 chr6 6472985 6473277 -182806277 - AluSx SINE Alu -23 289 1 1254 220 148 6 chr6 6473290 6473348 -182806206 - L1MC4 LINE L1 -65 7977 7929 275 49 24 0 chr6 6473348 6473389 -182806165 + (CA)n Simple_repeat Simple_repeat 2 43 0 1254 220 148 6 chr6 6473389 6473675 -182805879 - L1MC4 LINE L1 -113 7929 7584 324 0 0 0 chr6 6473687 6473723 -182805831 + (T)n Simple_repeat Simple_repeat 1 36 0 235 296 148 11 chr6 6474519 6474708 -182804846 - L2 LINE L2 -1094 2220 2006 517 271 23 8 chr6 6476052 6476185 -182803369 - MER97c DNA MER1_type? -952 138 4 307 284 0 0 chr6 6476810 6476884 -182802670 + L2 LINE L2 3239 3312 -1 235 315 33 33 chr6 6477101 6477193 -182802361 + MIR3 SINE MIR 86 177 -31 21 0 0 0 chr6 6477498 6477519 -182802035 + AT_rich Low_complexity Low_complexity 1 21 0 2682 152 163 10 chr6 6477551 6477991 -182801563 + MLT2B3 LTR ERVL 2 522 -32 572 40 13 0 chr6 6477991 6478066 -182801488 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2682 152 163 10 chr6 6478066 6478105 -182801449 + MLT2B3 LTR ERVL 522 554 0 1614 104 22 0 chr6 6478268 6478490 -182801064 - L1PA8 LINE L1 -6 6166 5940 369 364 65 5 chr6 6478676 6478893 -182800661 - MIR SINE MIR -21 241 12 15807 135 24 8 chr6 6479457 6481837 -182797717 + Tigger1 DNA MER2_type 1 2418 0 3934 113 16 0 chr6 6483455 6484006 -182795548 + L1PB1 LINE L1 5584 6143 -8 227 257 14 40 chr6 6486060 6486134 -182793420 + CT-rich Low_complexity Low_complexity 4 75 0 2800 104 0 3 chr6 6486231 6486616 -182792938 + MER41B LTR ERV1 166 549 -86 2164 115 52 30 chr6 6487106 6487472 -182792082 + THE1C LTR MaLR 2 375 0 752 71 0 0 chr6 6488973 6489071 -182790483 + L1MA8 LINE L1 5998 6095 -196 261 286 98 9 chr6 6489461 6489573 -182789981 - MIR SINE MIR -22 240 119 325 321 37 0 chr6 6489719 6489828 -182789726 + L2 LINE L2 3200 3312 -1 1679 155 7 28 chr6 6490241 6490532 -182789022 - AluJb SINE Alu -27 285 1 2412 61 0 0 chr6 6491638 6491932 -182787622 + AluY SINE Alu 1 294 -17 229 343 82 29 chr6 6492539 6492746 -182786808 - L3b LINE CR1 -203 1380 1163 1885 205 130 53 chr6 6493451 6493958 -182785596 + MLT1H LTR MaLR 4 549 0 229 233 50 33 chr6 6494411 6494471 -182785083 + L2 LINE L2 3206 3266 -6 2118 135 3 0 chr6 6495569 6495872 -182783682 + AluSg SINE Alu 3 306 -4 367 252 58 0 chr6 6496304 6496407 -182783147 - L2 LINE L2 -1413 1901 1793 232 248 9 115 chr6 6497575 6497688 -182781866 + MIR SINE MIR 46 146 -62 264 122 0 0 chr6 6497957 6497998 -182781556 + (TTC)n Simple_repeat Simple_repeat 2 42 0 19820 29 2 2 chr6 6498567 6500911 -182778643 - L1P LINE L1 -931 5215 2872 380 132 26 13 chr6 6501013 6501089 -182778465 + MLT1D LTR MaLR 429 505 0 1868 191 132 4 chr6 6501089 6501550 -182778004 + L1MB7 LINE L1 5646 6165 -19 6236 64 0 4 chr6 6501672 6502419 -182777135 - L1PA8 LINE L1 -5 6167 5424 1661 84 0 28 chr6 6502416 6502670 -182776884 + L1PA8 LINE L1 5154 5400 -746 183 80 0 0 chr6 6505183 6505208 -182774346 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 3015 194 24 26 chr6 6505247 6505929 -182773625 + Tigger6a DNA MER2_type 1 680 -403 1974 149 0 0 chr6 6506702 6506990 -182772564 - AluSx SINE Alu -24 288 1 1430 288 51 13 chr6 6507232 6507759 -182771795 - MLT1H LTR MaLR 0 549 3 972 299 25 0 chr6 6507762 6508083 -182771471 - LTR16C LTR ERVL -9 482 154 674 216 46 32 chr6 6508192 6508410 -182771144 - L2 LINE L2 -1366 1948 1728 16237 26 1 0 chr6 6508971 6511661 -182767893 - L1PA3 LINE L1 -3 6152 3462 1159 246 129 14 chr6 6511735 6512170 -182767384 + L1MC4 LINE L1 7375 7859 -183 2505 53 0 0 chr6 6512273 6512589 -182766965 - L1P2 LINE L1 -358 5796 5480 15057 27 0 0 chr6 6512589 6515136 -182764418 - L1PA3 LINE L1 -3 6152 3606 1914 50 0 8 chr6 6515310 6515571 -182763983 - L1PA3 LINE L1 -2524 3622 3364 1099 263 134 10 chr6 6516477 6516888 -182762666 - LTR16B LTR ERVL 0 464 3 303 49 0 0 chr6 6517979 6518020 -182761534 + (TC)n Simple_repeat Simple_repeat 2 42 0 462 327 13 13 chr6 6518318 6518477 -182761077 - MIR SINE MIR -46 216 58 266 303 98 25 chr6 6518501 6518623 -182760931 - MIR SINE MIR -9 253 123 315 299 21 0 chr6 6520383 6520480 -182759074 + MER81 DNA DNA 1 99 -15 354 158 0 49 chr6 6522333 6522415 -182757139 - L1MC2 LINE L1 -13 6331 6254 669 231 0 0 chr6 6522432 6522597 -182756957 - FRAM SINE Alu 0 182 18 4928 168 64 35 chr6 6522608 6523721 -182755833 - L1MC3 LINE L1 -84 7701 6557 21 36 0 0 chr6 6524035 6524063 -182755491 + AT_rich Low_complexity Low_complexity 1 28 0 684 101 20 0 chr6 6524074 6524173 -182755381 - L1MC1 LINE L1 -5 6328 6228 15952 157 15 11 chr6 6524173 6526880 -182752674 - ERVL LTR ERVL -2300 3464 748 312 305 22 59 chr6 6526891 6527153 -182752401 + L1ME4a LINE L1 5385 5650 -516 8371 251 34 30 chr6 6527616 6528581 -182750973 + L1MB4 LINE L1 217 1177 -5205 2137 143 25 25 chr6 6528581 6528945 -182750609 - THE1B LTR MaLR 0 364 1 8371 251 34 30 chr6 6528945 6530814 -182748740 + L1MB4 LINE L1 1177 3037 -3345 23060 38 3 0 chr6 6530814 6534438 -182745116 + L1PA5 LINE L1 2513 6149 -5 8371 251 34 30 chr6 6534438 6535633 -182743921 + L1MB4 LINE L1 3037 4447 -1935 216 0 0 0 chr6 6535633 6535657 -182743897 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8371 251 34 30 chr6 6535657 6536618 -182742936 + L1MB4 LINE L1 4447 5403 -979 2936 228 28 14 chr6 6536621 6537437 -182742117 + L1MB4 LINE L1 5588 6415 -1 590 339 85 14 chr6 6537931 6538214 -182741340 + MLT1H1 LTR MaLR 1 303 -252 744 294 162 7 chr6 6538439 6538884 -182740670 - L1MC4a LINE L1 -1919 5889 5376 21 0 0 0 chr6 6539098 6539119 -182740435 + AT_rich Low_complexity Low_complexity 1 21 0 4420 160 9 12 chr6 6539209 6540063 -182739491 - L1PB4 LINE L1 -1 6155 5304 1636 239 16 74 chr6 6540124 6540494 -182739060 - L1ME2 LINE L1 -22 6142 5829 1952 191 130 66 chr6 6540494 6541069 -182738485 - LTR9 LTR ERV1 0 612 1 1636 239 16 74 chr6 6541069 6541384 -182738170 - L1ME2 LINE L1 -335 5829 5497 490 242 160 50 chr6 6541488 6541769 -182737785 + L1ME4a LINE L1 5710 6021 -100 410 255 21 0 chr6 6541996 6542090 -182737464 + MIR3 SINE MIR 63 158 -50 1666 80 43 16 chr6 6542635 6543142 -182736412 - MER4A LTR ERV1 0 664 1 1220 222 102 21 chr6 6543213 6543645 -182735909 - MLT1C LTR MaLR 0 467 1 799 265 86 0 chr6 6543719 6543953 -182735601 - MIR SINE MIR 0 262 9 338 293 45 45 chr6 6544018 6544349 -182735205 + L1ME4a LINE L1 5552 5882 -239 4950 114 23 13 chr6 6545411 6546182 -182733372 + MER4E LTR ERV1 1 779 0 5000 34 0 0 chr6 6546733 6547324 -182732230 - LTR10C LTR ERV1 0 591 1 320 58 43 14 chr6 6549877 6549946 -182729608 + (TA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr6 6550997 6551019 -182728535 + AT_rich Low_complexity Low_complexity 1 22 0 3189 248 77 34 chr6 6551156 6552267 -182727287 + L1M4 LINE L1 39 1196 -5346 214 200 0 0 chr6 6552268 6552308 -182727246 + (TA)n Simple_repeat Simple_repeat 2 41 0 241 136 0 0 chr6 6552308 6552352 -182727202 + L1M4 LINE L1 1194 1237 -5305 4284 234 21 22 chr6 6552361 6553636 -182725918 + L1M4 LINE L1 3867 5147 -999 541 225 0 0 chr6 6553636 6553765 -182725789 + MLT2B3 LTR ERVL 1 129 -425 3031 26 0 4 chr6 6553765 6554164 -182725390 - L1P LINE L1 -730 5425 5028 6468 22 4 0 chr6 6554164 6554894 -182724660 + L1PA3 LINE L1 5419 6154 -1 2029 204 25 28 chr6 6554896 6555292 -182724262 + MLT2B3 LTR ERVL 122 516 -38 319 119 0 68 chr6 6555310 6555369 -182724185 + MLT2C2 LTR ERVL 407 461 -3 652 153 23 139 chr6 6555372 6555588 -182723966 + L1M4 LINE L1 5143 5333 -813 1056 179 0 39 chr6 6555593 6555800 -182723754 + AluJo SINE Alu 95 293 -19 755 172 38 19 chr6 6555802 6555959 -182723595 + L1M4 LINE L1 5323 5482 -702 342 318 139 9 chr6 6556764 6556987 -182722567 + MER112 DNA MER1_type 1 252 -8 403 278 56 0 chr6 6557005 6557131 -182722423 + HAL1 LINE L1 11 143 -2364 430 299 41 7 chr6 6557552 6557699 -182721855 + MLT1L LTR MaLR 428 579 -36 864 289 64 13 chr6 6557707 6558084 -182721470 + HAL1 LINE L1 1379 1774 -733 2504 232 40 2 chr6 6558237 6558768 -182720786 - MLT1F1 LTR MaLR -16 551 1 252 316 83 32 chr6 6558816 6558944 -182720610 + HAL1 LINE L1 2046 2166 -341 1661 129 43 0 chr6 6558944 6559200 -182720354 + AluSx SINE Alu 1 267 -45 252 316 83 32 chr6 6559200 6559324 -182720230 + HAL1 LINE L1 2166 2311 -196 * 5352 157 84 20 chr6 6559295 6560812 -182718742 + L1MC1 LINE L1 4720 6333 0 182 318 131 50 chr6 6561944 6562409 -182717145 + L2 LINE L2 1754 2256 -1058 728 295 214 21 chr6 6563504 6563935 -182715619 + L2 LINE L2 2205 2718 -596 569 212 58 0 chr6 6565586 6565723 -182713831 - MIR SINE MIR -14 248 104 312 291 138 26 chr6 6565934 6566123 -182713431 + L2 LINE L2 2210 2419 -895 1532 264 73 31 chr6 6566268 6566786 -182712768 + MLT1F1 LTR MaLR 9 548 -19 359 348 105 0 chr6 6566797 6566978 -182712576 + L2 LINE L2 2649 2848 -466 2014 124 7 0 chr6 6567835 6568125 -182711429 - AluSx SINE Alu -20 292 1 284 246 55 27 chr6 6568281 6568391 -182711163 + L2 LINE L2 2967 3079 -234 217 227 27 13 chr6 6569039 6569114 -182710440 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 227 164 16 49 chr6 6569170 6569231 -182710323 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 454 188 134 27 chr6 6569311 6569423 -182710131 + MER63 DNA MER1_type 1 750 -312 294 267 0 13 chr6 6569409 6569484 -182710070 + MER63 DNA MER1_type 985 1058 -4 * 216 128 0 0 chr6 6569556 6569568 -182709986 + (A)n Simple_repeat Simple_repeat 1 12 -27 1697 159 6 49 chr6 6569568 6569895 -182709659 + AluSq SINE Alu 1 313 0 216 128 0 0 chr6 6569895 6569921 -182709633 + (A)n Simple_repeat Simple_repeat 11 39 0 180 356 27 0 chr6 6570780 6570853 -182708701 - L2 LINE L2 -31 3282 3208 375 242 134 13 chr6 6571207 6571356 -182708198 - MER104 DNA Tc2 -13 167 1 4246 158 154 30 chr6 6572377 6573659 -182705895 - pTR5 LTR ERV1 -8 2430 738 261 218 0 0 chr6 6574398 6574476 -182705078 + (CA)n Simple_repeat Simple_repeat 1 78 0 554 202 6 0 chr6 6574491 6574669 -182704885 + (CA)n Simple_repeat Simple_repeat 2 180 0 182 190 0 17 chr6 6574700 6574758 -182704796 + (CA)n Simple_repeat Simple_repeat 2 58 0 182 174 65 65 chr6 6574829 6574875 -182704679 + L2 LINE L2 3219 3264 -8 249 224 0 30 chr6 6575233 6575300 -182704254 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 245 210 16 0 chr6 6575301 6575363 -182704191 - L1MC4 LINE L1 -1340 6702 6640 342 0 0 0 chr6 6575909 6575947 -182703607 + (CA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr6 6577919 6577950 -182701604 + (TA)n Simple_repeat Simple_repeat 1 31 0 210 71 0 0 chr6 6579118 6579146 -182700408 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 395 137 14 0 chr6 6579956 6580029 -182699525 + GA-rich Low_complexity Low_complexity 3 76 0 287 250 10 87 chr6 6580444 6580501 -182699053 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6580501 6580530 -182699024 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 287 250 10 87 chr6 6580530 6580576 -182698978 + MER21B LTR ERV1 59 107 -756 2694 235 111 26 chr6 6580576 6581342 -182698212 + MER21B LTR ERV1 22 852 -11 883 177 58 22 chr6 6581465 6581691 -182697863 + MER33 DNA MER1_type 9 242 -82 2623 138 52 54 chr6 6581707 6581726 -182697828 - L1MB3 LINE L1 -17 6166 6148 2122 106 0 0 chr6 6581726 6582019 -182697535 - AluSg SINE Alu -17 293 1 2623 138 52 54 chr6 6582019 6582480 -182697074 - L1MB3 LINE L1 -35 6148 5617 2167 110 3 0 chr6 6582480 6582789 -182696765 - AluSg SINE Alu 0 310 1 2623 138 52 54 chr6 6582789 6583060 -182696494 - L1MB3 LINE L1 -566 5617 5347 573 106 0 43 chr6 6583061 6583155 -182696399 + MER33 DNA MER1_type 273 362 -1 2119 110 3 3 chr6 6583577 6583877 -182695677 + AluSq SINE Alu 1 300 -13 2070 119 10 3 chr6 6584326 6584637 -182694917 - AluSq SINE Alu 0 313 1 2187 105 0 3 chr6 6584908 6585221 -182694333 + AluSx SINE Alu 1 312 0 218 300 27 55 chr6 6585383 6585493 -182694061 + MIR SINE MIR 98 204 -58 1617 163 7 14 chr6 6585758 6586053 -182693501 + AluJo SINE Alu 1 293 -19 303 206 98 10 chr6 6587379 6587481 -182692073 + MER53 DNA DNA 10 120 -69 1580 149 7 55 chr6 6587732 6588021 -182691533 + AluJb SINE Alu 3 277 -35 233 268 0 18 chr6 6588024 6588080 -182691474 + GA-rich Low_complexity Low_complexity 4 58 0 312 66 33 33 chr6 6588080 6588141 -182691413 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 336 308 116 27 chr6 6589127 6589273 -182690281 - MIR3 SINE MIR -34 174 16 1180 275 116 27 chr6 6589488 6590084 -182689470 + L2 LINE L2 2188 2836 -478 688 274 128 45 chr6 6590087 6590605 -182688949 - L1MB3 LINE L1 -1005 5141 4559 642 265 157 13 chr6 6590611 6590988 -182688566 - L1MB3 LINE L1 -2196 3950 3520 1163 168 10 14 chr6 6590989 6591198 -182688356 - AluJo SINE Alu -17 295 88 446 286 70 27 chr6 6591203 6591759 -182687795 - L1MB3 LINE L1 -2630 3516 2937 320 302 71 8 chr6 6591891 6592017 -182687537 - L1MEd LINE L1 -5394 725 592 4252 136 18 44 chr6 6592463 6593258 -182686296 - L1MC1 LINE L1 0 6333 5560 198 0 0 0 chr6 6594338 6594360 -182685194 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1784 87 77 45 chr6 6594505 6594792 -182684762 - AluSq SINE Alu -17 296 1 1847 83 8 30 chr6 6595202 6595467 -182684087 + AluSg SINE Alu 42 300 -10 373 239 142 7 chr6 6595548 6595703 -182683851 + L1ME4a LINE L1 5943 6118 -3 1042 109 0 0 chr6 6596047 6596194 -182683360 - AluSq/x SINE Alu -165 148 2 192 363 134 17 chr6 6598273 6598452 -182681102 + L2 LINE L2 1063 1262 -2052 627 255 98 21 chr6 6598706 6599032 -182680522 + HAL1 LINE L1 871 1221 -1286 227 280 0 0 chr6 6599032 6599082 -182680472 - MER45A DNA AcHobo -4 174 125 2010 115 0 3 chr6 6599094 6599380 -182680174 + AluSc SINE Alu 1 285 -24 1011 127 66 71 chr6 6599398 6599610 -182679944 + AluJo SINE Alu 20 230 -82 1188 168 172 27 chr6 6599619 6599881 -182679673 - AluJo SINE Alu -2 300 1 320 140 60 0 chr6 6599942 6599992 -182679562 + AluJo SINE Alu 235 287 -15 299 253 38 0 chr6 6599965 6600044 -182679510 - MER45A DNA AcHobo -35 143 62 * 898 177 100 15 chr6 6600234 6600505 -182679049 + MER33 DNA MER1_type 14 307 -17 354 257 61 20 chr6 6600642 6600790 -182678764 - LTR33A LTR ERVL -14 509 356 233 321 85 0 chr6 6601006 6601112 -182678442 - LTR33A LTR ERVL -350 173 59 710 261 120 53 chr6 6601162 6601728 -182677826 + HAL1 LINE L1 1884 2487 -20 427 276 44 108 chr6 6602225 6602569 -182676985 + MLT1I LTR MaLR 81 402 -7 1266 222 68 31 chr6 6602775 6603127 -182676427 - MLT1A1 LTR MaLR 0 365 1 833 67 0 0 chr6 6603464 6603569 -182675985 + AluY SINE Alu 196 300 -11 2339 103 3 0 chr6 6603847 6604157 -182675397 + AluSx SINE Alu 1 311 -1 1602 97 162 16 chr6 6604159 6604406 -182675148 + AluSx SINE Alu 2 284 -18 196 42 0 0 chr6 6604406 6604430 -182675124 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 487 306 44 14 chr6 6606172 6606397 -182673157 + MLT1J LTR MaLR 311 596 -19 233 127 28 70 chr6 6608002 6608073 -182671481 - L1MD1 LINE L1 -1 6241 6174 1802 226 108 26 chr6 6608185 6608760 -182670794 - L1MD2 LINE L1 -59 6300 5679 5484 244 90 15 chr6 6608775 6610491 -182669063 - L1MD2 LINE L1 -743 5403 3541 1748 252 23 50 chr6 6610491 6611066 -182668488 + MER68 LTR ERV1 2 560 -2 5484 244 90 15 chr6 6611066 6611170 -182668384 - L1MD2 LINE L1 -2605 3541 3446 2464 193 69 30 chr6 6611170 6611760 -182667794 - Tigger7 DNA MER2_type 0 2487 1 2826 239 19 35 chr6 6611760 6611973 -182667581 - L1MD2 LINE L1 -2699 3447 3232 1837 93 0 0 chr6 6611973 6612210 -182667344 - AluY SINE Alu 0 311 75 2826 239 19 35 chr6 6612210 6612729 -182666825 - L1MD2 LINE L1 -2914 3232 2706 1874 147 158 13 chr6 6612729 6613103 -182666451 - MSTA LTR MaLR 0 428 1 9511 124 36 39 chr6 6613103 6614686 -182664868 - MSTA-int LTR MaLR 0 1580 3 1966 144 137 13 chr6 6614688 6615069 -182664485 - MSTA LTR MaLR 0 428 1 2826 239 19 35 chr6 6615069 6615264 -182664290 - L1MD2 LINE L1 -3440 2706 2530 245 273 133 62 chr6 6615265 6615393 -182664161 - MIR SINE MIR -106 156 20 26 0 0 0 chr6 6615977 6616003 -182663551 + AT_rich Low_complexity Low_complexity 1 26 0 539 213 269 0 chr6 6617069 6617229 -182662325 + MER3 DNA MER1_type 1 203 -6 492 202 15 3 chr6 6617257 6617394 -182662160 - MER5A DNA MER1_type -14 175 3 1193 266 113 15 chr6 6617535 6617994 -182661560 + MER69 DNA AcHobo 214 717 -1809 1318 151 106 8 chr6 6618016 6618261 -182661293 - L1PA16 LINE L1 -9 6157 5889 1163 191 131 76 chr6 6618277 6618805 -182660749 + MER69 DNA AcHobo 1969 2525 -1 388 248 16 33 chr6 6618827 6618948 -182660606 + L2 LINE L2 3195 3313 0 1897 132 4 0 chr6 6620954 6621226 -182658328 + AluSc SINE Alu 37 309 0 390 42 0 0 chr6 6621226 6621274 -182658280 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5469 180 41 27 chr6 6621854 6623972 -182655582 - L1MB4 LINE L1 -37 6143 4015 455 310 104 30 chr6 6624091 6624359 -182655195 + L1MEc LINE L1 245 532 -6075 302 235 98 15 chr6 6624771 6624903 -182654651 + L1MEc LINE L1 999 1141 -5466 * 1741 271 102 13 chr6 6624892 6625726 -182653828 + L1MEc LINE L1 950 2077 -4481 1169 251 44 17 chr6 6625932 6626227 -182653327 + LTR40a LTR ERVL 217 519 0 296 299 31 16 chr6 6626231 6626358 -182653196 + L1MEc LINE L1 2076 2204 -4403 310 156 45 58 chr6 6626358 6626512 -182653042 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 904 190 85 63 chr6 6626529 6626845 -182652709 - MER33 DNA MER1_type 0 324 2 402 235 66 7 chr6 6626845 6626981 -182652573 + L1MEc LINE L1 2270 2413 -4194 514 255 85 7 chr6 6627199 6627352 -182652202 + MIR SINE MIR 2 166 -96 468 208 0 0 chr6 6628110 6628216 -182651338 + (TA)n Simple_repeat Simple_repeat 1 106 0 726 243 0 38 chr6 6628468 6628653 -182650901 + AluJo SINE Alu 122 299 -13 320 207 76 27 chr6 6629559 6629677 -182649877 + L1ME4a LINE L1 5752 5874 -247 258 32 0 0 chr6 6629704 6629735 -182649819 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 275 25 0 chr6 6629735 6629815 -182649739 + L1ME4a LINE L1 5973 6054 -67 231 229 16 16 chr6 6630164 6630225 -182649329 + GA-rich Low_complexity Low_complexity 4 64 0 2077 104 104 21 chr6 6630723 6631059 -182648495 - THE1B LTR MaLR 0 364 1 1537 179 23 29 chr6 6631130 6631438 -182648116 + AluJo SINE Alu 5 310 -2 242 297 158 0 chr6 6632341 6632442 -182647112 + MIR SINE MIR 35 151 -111 945 193 60 32 chr6 6632445 6632694 -182646860 - MER46C DNA MER2_type 0 338 83 317 232 0 49 chr6 6632813 6632895 -182646659 + MIR SINE MIR 155 232 -30 25 0 0 0 chr6 6633772 6633797 -182645757 + AT_rich Low_complexity Low_complexity 1 25 0 374 264 116 8 chr6 6634062 6634183 -182645371 + L2 LINE L2 3180 3313 0 3498 116 43 10 chr6 6634572 6635080 -182644474 - MER1A DNA MER1_type 0 527 3 247 67 67 0 chr6 6635545 6635590 -182643964 + CT-rich Low_complexity Low_complexity 4 51 0 2312 115 0 0 chr6 6635850 6636145 -182643409 + AluSx SINE Alu 5 299 -13 790 185 25 0 chr6 6636693 6636855 -182642699 + MER5A DNA MER1_type 1 166 -23 355 250 72 33 chr6 6636734 6636886 -182642668 - MER5A DNA MER1_type -31 158 1 * 1991 156 23 25 chr6 6637047 6637400 -182642154 + MLT1A1 LTR MaLR 13 364 -1 843 181 32 27 chr6 6637812 6638000 -182641554 - MER5A DNA MER1_type 0 189 1 1622 138 98 41 chr6 6640035 6640314 -182639240 - MLT1B LTR MaLR 0 390 89 2250 116 13 0 chr6 6640314 6640617 -182638937 + AluSp SINE Alu 1 307 -6 1622 138 98 41 chr6 6640617 6640654 -182638900 - MLT1B LTR MaLR -301 89 56 583 175 0 10 chr6 6640654 6640751 -182638803 - Tigger7 DNA MER2_type -2 2485 2390 1167 218 75 0 chr6 6640752 6640991 -182638563 - Tigger7 DNA MER2_type -468 265 9 362 143 18 0 chr6 6640998 6641054 -182638500 - MLT1B LTR MaLR -330 60 4 346 178 11 67 chr6 6642063 6642153 -182637401 - MIR SINE MIR -112 150 66 1520 216 49 6 chr6 6643020 6643367 -182636187 + MLT1A1 LTR MaLR 1 362 -3 1816 186 132 13 chr6 6643511 6643958 -182635596 - MLT1D LTR MaLR 0 505 6 212 204 161 21 chr6 6643963 6644056 -182635498 + MIR SINE MIR 140 245 -17 1346 199 69 22 chr6 6644713 6645030 -182634524 + MER58B DNA MER1_type 10 341 0 235 298 161 0 chr6 6645263 6645387 -182634167 - MIR SINE MIR -70 192 49 293 291 0 25 chr6 6645561 6645640 -182633914 + G-rich Low_complexity Low_complexity 1 77 0 636 192 21 21 chr6 6645644 6645956 -182633598 + GA-rich Low_complexity Low_complexity 1 312 0 181 313 35 56 chr6 6650170 6650314 -182629240 - MIR3 SINE MIR -3 205 65 2166 123 3 3 chr6 6650784 6651094 -182628460 + AluSx SINE Alu 3 312 0 2461 73 7 0 chr6 6651915 6652218 -182627336 + AluY SINE Alu 1 305 -6 736 284 46 17 chr6 6652251 6652490 -182627064 - Charlie8 DNA MER1_type -2171 246 1 1395 258 86 5 chr6 6652984 6653368 -182626186 - LTR16C LTR ERVL -6 485 71 1865 223 6 0 chr6 6653389 6653752 -182625802 - MLT1A1 LTR MaLR 0 365 1 1120 274 94 105 chr6 6653916 6654107 -182625447 + L1MEd LINE L1 453 645 -5885 207 0 0 0 chr6 6654107 6654130 -182625424 + (CA)n Simple_repeat Simple_repeat 2 24 0 1120 274 94 105 chr6 6654130 6654305 -182625249 + L1MEd LINE L1 645 820 -5710 23 54 0 0 chr6 6654305 6654342 -182625212 + AT_rich Low_complexity Low_complexity 1 37 0 1120 274 94 105 chr6 6654342 6655155 -182624399 + L1MEd LINE L1 820 1656 -4874 834 249 63 103 chr6 6655673 6656130 -182623424 - MLT1F LTR MaLR 0 542 104 3868 143 67 45 chr6 6656131 6657447 -182622107 - pTR5 LTR ERV1 0 2438 760 376 222 145 0 chr6 6657447 6657564 -182621990 - MLT1F LTR MaLR -453 140 7 723 180 0 0 chr6 6657676 6657815 -182621739 + L1MB2 LINE L1 6033 6171 0 432 242 131 79 chr6 6657959 6658092 -182621462 + L1MEd LINE L1 2385 2510 -4030 2146 111 16 0 chr6 6658092 6658399 -182621155 + AluSx SINE Alu 1 312 0 432 242 131 79 chr6 6658399 6658517 -182621037 + L1MEd LINE L1 2510 2649 -3891 707 247 75 45 chr6 6658517 6658784 -182620770 + L1M4 LINE L1 4015 4289 -1857 356 269 61 19 chr6 6658826 6658987 -182620567 - L1MB5 LINE L1 -332 5842 5677 186 238 109 59 chr6 6660261 6660362 -182619192 + MER5C DNA MER1_type 90 195 -129 794 134 34 0 chr6 6660441 6660560 -182618994 - FLAM_C SINE Alu -19 124 2 644 277 107 12 chr6 6660569 6660822 -182618732 + L1MD2 LINE L1 6083 6359 0 441 291 68 0 chr6 6661827 6661975 -182617579 + MIR SINE MIR 105 262 0 239 278 33 33 chr6 6662183 6662273 -182617281 + L2 LINE L2 3203 3292 -21 8872 137 68 41 chr6 6662627 6664279 -182615275 - pTR5 LTR ERV1 0 2438 741 595 207 79 12 chr6 6665622 6665786 -182613768 + MER5B DNA MER1_type 1 175 -3 2101 113 7 0 chr6 6665914 6666214 -182613340 + AluSx SINE Alu 1 302 -10 695 196 0 23 chr6 6666222 6666355 -182613199 + FLAM_C SINE Alu 4 133 0 221 313 12 12 chr6 6666511 6666594 -182612960 - MIR SINE MIR -12 250 168 210 316 38 0 chr6 6667724 6667803 -182611751 + L2 LINE L2 3231 3312 -1 198 24 24 49 chr6 6668288 6668329 -182611225 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2142 95 0 0 chr6 6668331 6668615 -182610939 - AluSx SINE Alu -28 284 1 233 71 0 0 chr6 6669854 6669882 -182609672 + MLT2C2 LTR ERVL 430 457 -7 315 209 27 0 chr6 6670288 6670398 -182609156 + GA-rich Low_complexity Low_complexity 2 114 0 854 227 39 0 chr6 6670618 6670821 -182608733 + L1MD2 LINE L1 6139 6349 -10 1069 184 23 14 chr6 6671973 6672190 -182607364 + MER20 DNA MER1_type 1 219 0 387 297 31 8 chr6 6673418 6673546 -182606008 + MIR SINE MIR 48 178 -84 511 250 275 18 chr6 6673557 6673837 -182605717 - LTR50 LTR ERVL -7 788 437 329 184 289 13 chr6 6673920 6674072 -182605482 - LTR50 LTR ERVL -581 214 21 235 231 62 31 chr6 6674089 6674154 -182605400 - L2 LINE L2 0 3272 3206 441 81 0 0 chr6 6674849 6674911 -182604643 + (GGATG)n Simple_repeat Simple_repeat 2 63 0 186 391 0 0 chr6 6676163 6676232 -182603322 + L2 LINE L2 3188 3256 -16 279 272 133 89 chr6 6676958 6677138 -182602416 + MIR SINE MIR 32 219 -43 268 356 60 20 chr6 6677987 6678136 -182601418 + L2 LINE L2 3096 3250 -22 771 243 65 9 chr6 6678154 6678368 -182601186 - MIR SINE MIR -3 259 34 513 160 0 25 chr6 6678709 6678828 -182600726 + CT-rich Low_complexity Low_complexity 3 118 0 267 122 0 0 chr6 6678999 6679048 -182600506 + (TC)n Simple_repeat Simple_repeat 2 50 0 259 297 59 25 chr6 6679165 6679283 -182600271 + L2 LINE L2 3180 3301 -12 468 293 79 11 chr6 6680294 6680560 -182598994 + L1ME4a LINE L1 5732 6015 -106 440 215 8 108 chr6 6681190 6681226 -182598328 + MER5B DNA MER1_type 1 39 -139 1030 191 14 101 chr6 6681226 6681581 -182597973 + MER33 DNA MER1_type 1 324 0 440 215 8 108 chr6 6681581 6681674 -182597880 + MER5B DNA MER1_type 39 117 -61 317 215 177 13 chr6 6681740 6681819 -182597735 - MIR SINE MIR -115 147 56 1023 143 7 7 chr6 6681995 6682149 -182597405 + MER5A DNA MER1_type 1 154 -35 667 187 112 8 chr6 6682155 6682289 -182597265 - MER58B DNA MER1_type -5 336 189 398 151 0 0 chr6 6682354 6682427 -182597127 - MER58B DNA MER1_type -161 180 108 185 262 0 0 chr6 6682438 6682480 -182597074 + MER5A DNA MER1_type 148 189 0 212 259 68 91 chr6 6682689 6682913 -182596641 + MIR3 SINE MIR 1 216 -46 347 156 0 56 chr6 6683861 6683951 -182595603 - L1PA3 LINE L1 -1 6154 6070 834 148 55 39 chr6 6683970 6684152 -182595402 - L1PA11 LINE L1 -80 6094 5910 1386 168 24 108 chr6 6685657 6686027 -182593527 - MER44D DNA MER2_type 0 609 1 889 210 11 0 chr6 6686468 6686654 -182592900 - MER5A DNA MER1_type 0 189 2 916 279 30 4 chr6 6686654 6686891 -182592663 + MIR SINE MIR 8 250 -12 2346 65 3 7 chr6 6687479 6687785 -182591769 - AluY SINE Alu -6 305 1 1386 191 48 22 chr6 6688580 6688894 -182590660 + MER33 DNA MER1_type 3 324 0 955 223 30 0 chr6 6688903 6689100 -182590454 - MER3 DNA MER1_type -1 208 6 2136 36 0 0 chr6 6689132 6689380 -182590174 - L1PA3 LINE L1 0 6155 5908 2298 15 0 11 chr6 6689380 6689646 -182589908 + L1PA3 LINE L1 5622 5884 -271 1889 218 130 2 chr6 6689868 6690300 -182589254 - MLT1D LTR MaLR 0 505 19 864 154 0 0 chr6 6690750 6690893 -182588661 + FLAM_C SINE Alu 1 143 0 1463 176 29 13 chr6 6690912 6691219 -182588335 + AluJo SINE Alu 1 312 0 304 269 0 0 chr6 6692168 6692235 -182587319 - MER91A DNA MER1_type -1 195 129 216 319 21 21 chr6 6692647 6692741 -182586813 - MER91A DNA MER1_type -67 129 36 1143 87 0 25 chr6 6693540 6693701 -182585853 - L1MA9 LINE L1 -623 5689 5533 2247 159 80 9 chr6 6693712 6694139 -182585415 + L1MA9 LINE L1 5705 6161 -151 300 273 0 0 chr6 6694139 6694260 -182585294 + (CA)n Simple_repeat Simple_repeat 1 121 0 352 113 0 42 chr6 6694287 6694358 -182585196 + L1MA9 LINE L1 6245 6312 0 1528 145 67 28 chr6 6694716 6694998 -182584556 + AluJb SINE Alu 1 293 -19 187 107 0 0 chr6 6695305 6695333 -182584221 - L3b LINE CR1 -12 1571 1544 490 308 79 23 chr6 6695786 6696000 -182583554 - MIR SINE MIR -2 260 35 319 273 33 8 chr6 6696243 6696364 -182583190 - LTR67 LTR ERVL -1 556 433 212 309 53 11 chr6 6696533 6696627 -182582927 + MER91C DNA MER1_type 31 128 -12 417 267 99 0 chr6 6696695 6696796 -182582758 - MIR SINE MIR -144 118 8 3324 313 125 21 chr6 6696868 6698438 -182581116 + L2 LINE L2 670 2528 -785 420 20 0 0 chr6 6698438 6698487 -182581067 + (CA)n Simple_repeat Simple_repeat 1 49 0 3324 313 125 21 chr6 6698487 6699104 -182580450 + L2 LINE L2 2528 3079 -234 425 257 124 92 chr6 6699117 6699335 -182580219 - MIR SINE MIR -5 257 33 483 291 88 48 chr6 6699340 6699463 -182580091 + L2 LINE L2 3078 3195 -118 2438 146 3 3 chr6 6699463 6699827 -182579727 - THE1B LTR MaLR 0 364 1 483 291 88 48 chr6 6699827 6699930 -182579624 + L2 LINE L2 3195 3313 0 233 197 15 61 chr6 6700194 6700260 -182579294 + GA-rich Low_complexity Low_complexity 1 63 0 2015 96 7 0 chr6 6700815 6701087 -182578467 - AluSg SINE Alu -16 294 21 433 155 0 0 chr6 6701164 6701235 -182578319 - L1MA4A LINE L1 -43 6260 6190 2656 119 19 5 chr6 6701237 6701665 -182577889 - L1MA4A LINE L1 -184 6119 5686 2178 114 0 0 chr6 6702248 6702556 -182576998 + AluSx SINE Alu 1 308 -4 288 254 58 78 chr6 6703674 6703879 -182575675 - L3 LINE CR1 -163 1414 1214 1033 251 165 4 chr6 6704158 6704613 -182574941 + L2 LINE L2 2380 2907 -407 715 280 34 62 chr6 6704645 6704966 -182574588 + L2 LINE L2 2995 3306 -7 180 111 0 0 chr6 6706595 6706622 -182572932 + (GA)n Simple_repeat Simple_repeat 1 27 0 452 280 119 76 chr6 6707431 6707780 -182571774 - MLT1K LTR MaLR -17 571 197 2256 113 17 210 chr6 6707780 6708384 -182571170 + LTR45B LTR ERV1 3 489 0 452 280 119 76 chr6 6708384 6708481 -182571073 - MLT1K LTR MaLR -391 197 106 717 261 99 9 chr6 6708567 6708789 -182570765 + MIR SINE MIR 21 262 0 2301 87 0 13 chr6 6709109 6709418 -182570136 + AluSx SINE Alu 1 305 -7 349 282 100 36 chr6 6710248 6710468 -182569086 - MIR SINE MIR -9 253 20 194 352 45 11 chr6 6710764 6710852 -182568702 - L2 LINE L2 -1 3312 3222 280 272 51 4 chr6 6712438 6712535 -182567019 - MER91A DNA MER1_type -2 188 90 523 218 18 9 chr6 6712565 6712675 -182566879 - MER91A DNA MER1_type -81 115 5 408 265 86 124 chr6 6713058 6713315 -182566239 + L2 LINE L2 3023 3269 -3 1663 189 66 76 chr6 6713349 6713821 -182565733 - MLT1C LTR MaLR 0 467 1 249 338 144 7 chr6 6713843 6713982 -182565572 - MIR SINE MIR -71 191 34 186 276 236 24 chr6 6713999 6714122 -182565432 + MIR SINE MIR 10 158 -104 556 259 37 12 chr6 6714763 6714924 -182564630 + MIR SINE MIR 22 186 -63 644 111 96 15 chr6 6715112 6715247 -182564307 + L1MB3 LINE L1 6034 6179 -4 1961 106 7 0 chr6 6715523 6715832 -182563722 - AluSx SINE Alu 0 311 1 433 60 15 0 chr6 6715848 6715915 -182563639 + L1MB2 LINE L1 6103 6170 -1 322 305 188 8 chr6 6717180 6717308 -182562246 + MIR3 SINE MIR 51 201 -7 299 231 15 0 chr6 6718553 6718618 -182560936 + MER63 DNA MER1_type 685 750 -311 34984 84 7 10 chr6 6718635 6723420 -182556134 + L1P LINE L1 11 4780 -1366 237 277 0 15 chr6 6723422 6723487 -182556067 + L2 LINE L2 3205 3268 -4 1354 175 34 14 chr6 6723943 6724235 -182555319 - MER33 DNA MER1_type -24 300 3 523 290 45 57 chr6 6724270 6724504 -182555050 - MIR SINE MIR 0 262 37 2232 54 7 10 chr6 6724614 6724908 -182554646 + AluY SINE Alu 1 293 -18 270 0 0 0 chr6 6724950 6724980 -182554574 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 120 0 0 chr6 6724980 6725263 -182554291 - AluSx SINE Alu -29 283 1 971 256 127 9 chr6 6725806 6726122 -182553432 - MLT1J LTR MaLR -4 507 155 304 231 33 165 chr6 6726135 6726226 -182553328 - MLT1E LTR MaLR -244 410 250 314 203 17 0 chr6 6726297 6726356 -182553198 + LTR16B LTR ERVL 1 60 -404 635 152 7 80 chr6 6726358 6726496 -182553058 + FRAM SINE Alu 27 154 -22 2067 117 0 0 chr6 6726514 6726812 -182552742 + AluSc SINE Alu 2 299 -10 2269 81 3 0 chr6 6728054 6728350 -182551204 - AluSp SINE Alu -16 297 1 428 291 126 0 chr6 6728784 6728935 -182550619 + MIR SINE MIR 92 261 -1 246 156 0 0 chr6 6729031 6729076 -182550478 + (CA)n Simple_repeat Simple_repeat 2 46 0 301 302 51 51 chr6 6729906 6730121 -182549433 - L2 LINE L2 -373 2941 2727 25 31 0 0 chr6 6730788 6730820 -182548734 + AT_rich Low_complexity Low_complexity 1 32 0 1278 232 38 55 chr6 6731290 6731742 -182547812 - HsTC2 DNA Tc2 0 1900 1281 516 340 21 5 chr6 6732153 6732341 -182547213 + MIR SINE MIR 20 210 -52 196 330 70 9 chr6 6732988 6733103 -182546451 + MIR SINE MIR 69 190 -72 2502 56 0 0 chr6 6733275 6733578 -182545976 + AluSq SINE Alu 1 303 -10 527 211 24 0 chr6 6733594 6733760 -182545794 + CT-rich Low_complexity Low_complexity 1 170 0 272 200 0 0 chr6 6734490 6734540 -182545014 - MER103 DNA DNA -53 113 64 4375 206 109 8 chr6 6734845 6735824 -182543730 + Tigger6a DNA MER2_type 1 1078 -5 2231 163 10 3 chr6 6736719 6737106 -182542448 - MLT1B LTR MaLR 0 390 1 251 348 54 49 chr6 6737183 6737367 -182542187 + L2 LINE L2 2175 2359 -955 3994 138 19 32 chr6 6738144 6738868 -182540686 - L1PA16 LINE L1 -17 6149 5435 189 0 0 0 chr6 6739019 6739040 -182540514 + (CA)n Simple_repeat Simple_repeat 2 22 0 323 282 12 0 chr6 6739708 6739793 -182539761 + (TG)n Simple_repeat Simple_repeat 1 86 0 724 133 106 72 chr6 6740531 6740711 -182538843 - MLT1C LTR MaLR -279 188 3 4002 322 40 26 chr6 6740715 6742165 -182537389 + HERV16 LTR ERVL 1854 3323 -1673 2167 124 0 0 chr6 6743829 6744136 -182535418 + AluSg SINE Alu 1 307 -3 4422 136 58 22 chr6 6744950 6745706 -182533848 - LTR1 LTR ERV1 -2 783 1 304 265 20 61 chr6 6746160 6746258 -182533296 - MER5A DNA MER1_type -56 133 40 283 274 0 0 chr6 6747423 6747496 -182532058 + MER116 DNA Mariner 8 80 0 448 200 89 0 chr6 6747700 6747790 -182531764 + MER5A DNA MER1_type 9 106 -83 389 185 43 0 chr6 6748031 6748123 -182531431 - MLT1F LTR MaLR 0 542 447 * 637 230 0 15 chr6 6748094 6748229 -182531325 - MLT1E LTR MaLR -460 133 1 568 250 59 13 chr6 6748372 6748524 -182531030 + MER5B DNA MER1_type 17 175 -3 2112 98 13 10 chr6 6748532 6748837 -182530717 + AluSx SINE Alu 1 306 -6 211 170 0 43 chr6 6749105 6749152 -182530402 + GA-rich Low_complexity Low_complexity 4 48 0 2403 161 22 18 chr6 6749160 6749600 -182529954 + L1MC1 LINE L1 5882 6324 -4 1603 170 25 3 chr6 6749600 6749883 -182529671 - AluJb SINE Alu -22 290 2 23 0 0 0 chr6 6749888 6749911 -182529643 + AT_rich Low_complexity Low_complexity 1 23 0 388 296 170 6 chr6 6750033 6750192 -182529362 - MIR3 SINE MIR -6 202 18 821 144 24 0 chr6 6751908 6752033 -182527521 + FLAM_C SINE Alu 1 128 -15 2733 7 0 7 chr6 6752904 6753214 -182526340 + AluY SINE Alu 1 308 -3 251 205 33 131 chr6 6753624 6753746 -182525808 + MIR3 SINE MIR 51 160 -48 215 280 0 0 chr6 6753967 6754017 -182525537 + MIR3 SINE MIR 153 202 -6 2015 132 7 13 chr6 6754501 6754811 -182524743 + AluSx SINE Alu 1 308 -4 443 311 86 5 chr6 6755616 6755838 -182523716 - MLT1L LTR MaLR -1 614 375 2295 218 51 19 chr6 6755871 6756377 -182523177 + MER45B DNA AcHobo 1 526 -514 2208 116 13 3 chr6 6756377 6756687 -182522867 + AluSq SINE Alu 1 313 0 2295 218 51 19 chr6 6756687 6756707 -182522847 + MER45B DNA AcHobo 526 544 -496 793 209 0 7 chr6 6757293 6757446 -182522108 + FRAM SINE Alu 17 168 -8 24 32 0 0 chr6 6757446 6757477 -182522077 + AT_rich Low_complexity Low_complexity 1 31 0 202 273 68 11 chr6 6757958 6758046 -182521508 - MIR SINE MIR -97 111 19 1090 186 14 18 chr6 6758273 6758493 -182521061 - MER20 DNA MER1_type 0 219 1 357 244 33 0 chr6 6758637 6758727 -182520827 - MER92C-int LTR ERV1 -4163 2638 2546 2115 107 0 69 chr6 6758771 6759090 -182520464 + AluSx SINE Alu 1 297 -15 251 299 0 31 chr6 6761323 6761420 -182518134 - MER92C-int LTR ERV1 -4770 166 73 1281 251 72 55 chr6 6761522 6761907 -182517647 - MER92C LTR ERV1 -2 552 154 1912 159 59 14 chr6 6761907 6762278 -182517276 - MLT1B LTR MaLR -2 388 1 1281 251 72 55 chr6 6762278 6762435 -182517119 - MER92C LTR ERV1 -400 154 1 1107 159 68 19 chr6 6764381 6764588 -182514966 + AluJo SINE Alu 85 301 -11 225 0 0 0 chr6 6765440 6765465 -182514089 + (A)n Simple_repeat Simple_repeat 1 25 0 1132 136 16 0 chr6 6766237 6766421 -182513133 + L1MA4 LINE L1 6107 6293 -7 2828 7 0 0 chr6 6766440 6766738 -182512816 + AluYa5 SINE Alu 1 298 -13 207 0 0 0 chr6 6766738 6766761 -182512793 + (TA)n Simple_repeat Simple_repeat 2 24 0 2140 101 3 11 chr6 6767032 6767318 -182512236 + AluSx SINE Alu 2 285 -27 857 185 143 21 chr6 6767843 6768032 -182511522 - MER20 DNA MER1_type 0 219 8 706 184 93 93 chr6 6768046 6768367 -182511187 + MER33 DNA MER1_type 1 321 -3 2092 105 10 3 chr6 6768947 6769241 -182510313 - AluSq SINE Alu -13 300 5 207 0 0 0 chr6 6769669 6769692 -182509862 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 307 324 9 0 chr6 6769932 6770037 -182509517 - MIR SINE MIR -67 141 36 473 285 41 60 chr6 6770990 6771085 -182508469 + L1ME3A LINE L1 5852 5947 -223 3125 186 20 8 chr6 6771085 6771691 -182507863 + L1MB3 LINE L1 5565 6177 -6 473 285 41 60 chr6 6771691 6771914 -182507640 + L1ME3A LINE L1 5947 6164 -6 190 302 139 12 chr6 6772769 6772855 -182506699 - MIR3 SINE MIR -48 160 64 1775 164 19 13 chr6 6772855 6773165 -182506389 + AluJo SINE Alu 1 312 0 280 275 80 22 chr6 6777240 6777378 -182502176 + MIR SINE MIR 117 262 0 205 291 236 6 chr6 6777497 6777662 -182501892 - L3 LINE CR1 -145 1432 1230 2024 138 0 7 chr6 6777671 6777967 -182501587 - AluY SINE Alu -17 294 1 2265 116 0 3 chr6 6777967 6778268 -182501286 - AluSx SINE Alu -12 300 1 412 296 108 35 chr6 6778367 6778738 -182500816 - L3 LINE CR1 -567 1010 613 345 318 139 9 chr6 6779813 6780036 -182499518 + MER112 DNA MER1_type 1 252 -8 404 278 56 0 chr6 6780054 6780180 -182499374 + HAL1 LINE L1 11 143 -2364 436 299 41 7 chr6 6780601 6780748 -182498806 + MLT1L LTR MaLR 428 579 -36 872 286 64 13 chr6 6780756 6781133 -182498421 + HAL1 LINE L1 1379 1774 -733 5082 114 23 13 chr6 6781935 6782706 -182496848 + MER4E LTR ERV1 1 779 0 5109 34 0 0 chr6 6783257 6783848 -182495706 - LTR10C LTR ERV1 0 591 1 4553 174 29 50 chr6 6787002 6788480 -182491074 + L1MA9 LINE L1 4721 6174 -181 357 24 0 0 chr6 6788480 6788522 -182491032 + (CA)n Simple_repeat Simple_repeat 1 42 0 4553 174 29 50 chr6 6788522 6788701 -182490853 + L1MA9 LINE L1 6174 6355 0 2417 233 49 60 chr6 6788709 6789712 -182489842 + L1ME3 LINE L1 5172 6161 -1 276 303 57 25 chr6 6789801 6789923 -182489631 + L2 LINE L2 3179 3304 -9 572 265 85 51 chr6 6792007 6792301 -182487253 + L2 LINE L2 3010 3313 0 573 246 0 9 chr6 6792420 6792534 -182487020 + MER81 DNA DNA 1 113 -1 404 297 76 51 chr6 6792620 6792896 -182486658 + LTR33 LTR ERVL 236 518 -3 259 292 153 0 chr6 6792951 6793088 -182486466 + MIR SINE MIR 97 254 -8 207 100 0 0 chr6 6793776 6793806 -182485748 + (CA)n Simple_repeat Simple_repeat 1 30 0 759 169 80 85 chr6 6793953 6794154 -182485400 + MLT1C LTR MaLR 53 252 -215 1294 96 0 0 chr6 6794154 6794321 -182485233 - L1PA13 LINE L1 -485 5678 5512 3179 120 2 0 chr6 6794325 6794792 -182484762 + L1PA13 LINE L1 5694 6161 -2 666 249 124 5 chr6 6794807 6795008 -182484546 + MLT1C LTR MaLR 278 502 -3 405 269 144 6 chr6 6795951 6796118 -182483436 + LTR33 LTR ERVL 1 190 -331 349 319 22 0 chr6 6796206 6796341 -182483213 + LTR33 LTR ERVL 339 476 -45 196 318 45 23 chr6 6796517 6796605 -182482949 + MIR SINE MIR 110 199 -63 780 160 15 0 chr6 6798078 6798209 -182481345 + FRAM SINE Alu 19 151 -25 22 56 0 0 chr6 6798337 6798373 -182481181 + AT_rich Low_complexity Low_complexity 1 36 0 210 182 23 0 chr6 6798432 6798476 -182481078 + T-rich Low_complexity Low_complexity 4 48 0 2150 129 0 13 chr6 6798482 6798791 -182480763 - AluSx SINE Alu -7 305 1 202 245 19 19 chr6 6799661 6799714 -182479840 + L2 LINE L2 3214 3266 -6 669 174 174 6 chr6 6799827 6799988 -182479566 - MER5A DNA MER1_type 0 189 2 25 0 0 0 chr6 6800055 6800080 -182479474 + AT_rich Low_complexity Low_complexity 1 25 0 323 94 0 19 chr6 6803722 6803775 -182475779 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1445 271 139 35 chr6 6804602 6805567 -182473987 + HAL1 LINE L1 812 1876 -631 277 277 0 42 chr6 6806008 6806127 -182473427 + HAL1b LINE L1 745 858 -490 180 200 0 0 chr6 6806232 6806272 -182473282 + GA-rich Low_complexity Low_complexity 4 43 0 352 238 59 10 chr6 6806335 6806436 -182473118 - LTR67 LTR ERVL -3 554 449 440 310 50 54 chr6 6806716 6806977 -182472577 - LTR67 LTR ERVL -296 261 2 22 0 0 0 chr6 6807213 6807235 -182472319 + AT_rich Low_complexity Low_complexity 1 22 0 460 225 11 0 chr6 6807830 6807919 -182471635 - L2 LINE L2 0 3272 3183 327 240 101 78 chr6 6807945 6808162 -182471392 + MIR SINE MIR 3 224 -38 236 357 35 28 chr6 6808235 6808378 -182471176 - L2 LINE L2 -180 3092 2949 423 305 135 9 chr6 6809627 6809945 -182469609 - L2 LINE L2 -1088 2226 1869 220 221 221 18 chr6 6810003 6810116 -182469438 - MIR SINE MIR -49 213 78 357 269 50 0 chr6 6810970 6811089 -182468465 + L1ME LINE L1 5619 5743 -378 566 75 12 12 chr6 6811089 6811169 -182468385 - MADE1 DNA Mariner 0 80 1 561 325 30 26 chr6 6811244 6811512 -182468042 - L1MC/D LINE L1 -2188 5689 5421 746 124 0 0 chr6 6811540 6811645 -182467909 + AluJb SINE Alu 9 113 -199 889 124 12 0 chr6 6811645 6811806 -182467748 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 329 317 0 0 chr6 6812272 6812414 -182467140 - L1MC/D LINE L1 -1333 4882 4741 307 157 0 0 chr6 6813272 6813323 -182466231 - MLT-int LTR MaLR -1006 729 679 258 279 0 0 chr6 6813385 6813446 -182466108 - MLT1-int LTR MaLR -487 884 824 * 2074 194 37 31 chr6 6813435 6813920 -182465634 - MLT1-int LTR MaLR -660 711 224 1901 212 107 1 chr6 6813933 6814613 -182464941 - L1MEc LINE L1 -3423 2792 2071 40 59 0 0 chr6 6814671 6814739 -182464815 + AT_rich Low_complexity Low_complexity 1 68 0 875 258 65 108 chr6 6814815 6815295 -182464259 - LTR40b LTR ERVL 0 462 4 1087 238 34 3 chr6 6815298 6815635 -182463919 - HERVL40 LTR ERVL 0 5530 2784 270 330 45 17 chr6 6815504 6815680 -182463874 - MER89-int LTR ERV1 -291 6510 6330 * 256 275 78 60 chr6 6815609 6815892 -182463662 - HERVL40 LTR ERVL -256 2781 2740 * 513 263 51 110 chr6 6816059 6816413 -182463141 - HERVL40 LTR ERVL -328 2709 2377 2175 240 79 3 chr6 6816566 6817146 -182462408 - HERVL40 LTR ERVL -874 4656 1844 753 303 5 10 chr6 6817162 6817370 -182462184 - HERVL40 LTR ERVL -2159 3371 3165 2085 139 3 0 chr6 6819459 6819760 -182459794 + AluSq SINE Alu 2 303 -10 192 273 74 33 chr6 6821511 6821632 -182457922 + MER5A DNA MER1_type 43 168 -21 2107 114 29 0 chr6 6821915 6822195 -182457359 + AluSc SINE Alu 1 288 -21 416 332 44 22 chr6 6823992 6824263 -182455291 - L2 LINE L2 -191 3081 2805 2676 70 11 8 chr6 6824385 6824740 -182454814 + L1PA11 LINE L1 5819 6174 0 2371 89 3 3 chr6 6824997 6825300 -182454254 - AluSq SINE Alu -10 303 1 1427 140 91 7 chr6 6825849 6826134 -182453420 + L1MB2 LINE L1 5771 6079 -92 304 249 6 6 chr6 6826425 6826602 -182452952 + (CA)n Simple_repeat Simple_repeat 1 177 0 364 290 50 40 chr6 6826917 6827117 -182452437 - MIR SINE MIR -41 221 20 1741 60 5 0 chr6 6827536 6827751 -182451803 - L1PA5 LINE L1 -164 5990 5775 1049 52 0 15 chr6 6827751 6827885 -182451669 + L1PA5 LINE L1 6021 6154 0 1638 202 0 3 chr6 6828547 6828829 -182450725 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr6 6828834 6828861 -182450693 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 584 245 130 37 chr6 6829273 6829571 -182449983 - LTR16A1 LTR ERVL -2 455 155 253 232 0 0 chr6 6829781 6829837 -182449717 + MIR SINE MIR 129 184 -78 595 283 123 41 chr6 6831556 6832458 -182447096 + L1ME3A LINE L1 4562 5546 -747 386 241 208 70 chr6 6832626 6832996 -182446558 + MLT1H LTR MaLR 129 549 0 585 322 130 25 chr6 6833168 6833491 -182446063 + MLT1L LTR MaLR 215 571 -44 346 386 40 18 chr6 6833558 6833849 -182445705 + L1ME3A LINE L1 5655 5950 -220 594 229 8 0 chr6 6834031 6834153 -182445401 - FLAM_C SINE Alu -19 124 2 1316 214 106 106 chr6 6834156 6834655 -182444899 - MLT1F1 LTR MaLR -43 524 1 288 377 41 0 chr6 6837108 6837254 -182442300 + L3 LINE CR1 890 1041 -536 436 235 182 0 chr6 6837467 6837599 -182441955 + L3 LINE CR1 1049 1204 -373 399 311 82 25 chr6 6837712 6837956 -182441598 + L1ME LINE L1 5405 5662 -459 203 179 0 0 chr6 6837991 6838030 -182441524 + A-rich Low_complexity Low_complexity 1 39 0 447 338 64 0 chr6 6838074 6838293 -182441261 - MIR SINE MIR -7 255 23 219 225 62 25 chr6 6838412 6838492 -182441062 - L3 LINE CR1 -1377 200 118 243 0 0 0 chr6 6838680 6838707 -182440847 + (A)n Simple_repeat Simple_repeat 1 27 0 2042 89 64 11 chr6 6840612 6840759 -182438795 - AluSq SINE Alu -17 296 158 2419 96 0 0 chr6 6840759 6841060 -182438494 - AluSg SINE Alu -9 301 1 2042 89 64 11 chr6 6841060 6841193 -182438361 - AluSq SINE Alu -155 158 1 21 0 0 0 chr6 6841233 6841254 -182438300 + AT_rich Low_complexity Low_complexity 1 21 0 509 83 0 0 chr6 6841510 6841582 -182437972 - AluS SINE Alu -238 74 3 21 0 0 0 chr6 6841755 6841776 -182437778 + AT_rich Low_complexity Low_complexity 1 21 0 1041 134 0 0 chr6 6841776 6841925 -182437629 - AluJo SINE Alu -30 282 134 296 100 0 20 chr6 6842007 6842057 -182437497 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1326 215 39 16 chr6 6842199 6842511 -182437043 + MER33 DNA MER1_type 6 324 0 594 236 121 0 chr6 6844250 6844432 -182435122 + MIR SINE MIR 33 236 -26 198 279 63 0 chr6 6844513 6844592 -182434962 + MER5A DNA MER1_type 33 116 -73 223 278 56 0 chr6 6845252 6845342 -182434212 - L2 LINE L2 -2 3311 3217 536 250 71 95 chr6 6845538 6845795 -182433759 + L2 LINE L2 2830 3092 -221 1230 202 73 35 chr6 6845795 6846082 -182433472 - AluJb SINE Alu -3 299 2 2388 105 0 6 chr6 6846086 6846400 -182433154 - AluSx SINE Alu 0 312 1 536 250 71 95 chr6 6846400 6846413 -182433141 + L2 LINE L2 3095 3107 -206 665 144 127 0 chr6 6846413 6846531 -182433023 - AluJo SINE Alu -169 133 1 536 250 71 95 chr6 6846531 6846750 -182432804 + L2 LINE L2 3107 3313 0 2078 105 10 10 chr6 6847048 6847342 -182432212 - AluSx SINE Alu -18 294 1 213 200 71 14 chr6 6848192 6848262 -182431292 + MIR SINE MIR 38 111 -97 407 200 14 117 chr6 6848297 6848339 -182431215 + L2 LINE L2 3183 3228 -85 2206 133 0 13 chr6 6848339 6848656 -182430898 - AluSq SINE Alu 0 313 1 407 200 14 117 chr6 6848656 6848758 -182430796 + L2 LINE L2 3228 3312 -1 830 201 12 6 chr6 6848963 6849127 -182430427 - MER58B DNA MER1_type 0 341 177 1273 203 8 4 chr6 6849127 6849364 -182430190 - MER8 DNA MER2_type 0 239 2 591 281 77 108 chr6 6850354 6850431 -182429123 - MLT1K LTR MaLR 0 588 510 653 178 31 8 chr6 6850431 6850560 -182428994 + FLAM_C SINE Alu 2 133 0 591 281 77 108 chr6 6850560 6850952 -182428602 - MLT1K LTR MaLR -78 510 134 2327 90 0 3 chr6 6851261 6851561 -182427993 - AluSc SINE Alu -10 299 1 1588 105 5 0 chr6 6851911 6852121 -182427433 + AluSg/x SINE Alu 83 293 -17 633 177 18 0 chr6 6852140 6852253 -182427301 - FRAM SINE Alu -18 158 44 183 352 148 0 chr6 6852259 6852401 -182427153 + L2 LINE L2 3027 3189 -83 2008 170 0 0 chr6 6852679 6852991 -182426563 + AluSx SINE Alu 1 312 0 563 309 65 40 chr6 6853346 6853776 -182425778 + L1ME LINE L1 5276 5716 -405 979 270 93 0 chr6 6854259 6854537 -182425017 - MER115 DNA AcHobo -385 308 5 1911 107 0 84 chr6 6854649 6855004 -182424550 - AluSx SINE Alu 0 329 1 2034 108 25 14 chr6 6855004 6855290 -182424264 - AluSx SINE Alu -23 289 1 21 36 0 0 chr6 6856290 6856318 -182423236 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 6856742 6856765 -182422789 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 523 249 30 75 chr6 6857040 6857241 -182422313 + MER112 DNA MER1_type 52 243 -17 2068 115 20 0 chr6 6857243 6857596 -182421958 - AluSx SINE Alu 0 359 1 271 218 90 13 chr6 6858023 6858101 -182421453 + LTR33A LTR ERVL 440 523 0 1904 129 0 0 chr6 6858391 6858646 -182420908 - AluSx SINE Alu -56 256 2 418 210 25 4 chr6 6859061 6859180 -182420374 + MER5A DNA MER1_type 24 186 -3 272 327 80 43 chr6 6859267 6859429 -182420125 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 6859634 6859808 -182419746 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 6860341 6860422 -182419132 + GA-rich Low_complexity Low_complexity 4 83 0 951 143 0 0 chr6 6862139 6862272 -182417282 - FLAM_C SINE Alu 0 133 1 6268 155 55 89 chr6 6862527 6864158 -182415396 - L1MC3 LINE L1 0 7785 6211 276 186 43 0 chr6 6864271 6864341 -182415213 + CT-rich Low_complexity Low_complexity 1 73 0 711 112 0 0 chr6 6864343 6864450 -182415104 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 495 208 0 10 chr6 6865000 6865101 -182414453 - MER45A DNA AcHobo 0 178 79 300 273 0 0 chr6 6865321 6865387 -182414167 - L2 LINE L2 -2 3270 3205 277 218 24 48 chr6 6865562 6865686 -182413868 - LTR67 LTR ERVL -11 546 426 274 156 31 0 chr6 6865982 6866046 -182413508 + (TA)n Simple_repeat Simple_repeat 1 66 0 816 311 86 6 chr6 6866124 6866462 -182413092 + LTR16C LTR ERVL 125 489 -2 275 187 36 14 chr6 6866663 6866802 -182412752 + GA-rich Low_complexity Low_complexity 1 142 0 2339 98 3 0 chr6 6867778 6868074 -182411480 - AluSx SINE Alu -15 297 1 810 236 132 0 chr6 6869240 6869452 -182410102 + MIR SINE MIR 13 252 -10 404 367 67 11 chr6 6869452 6869722 -182409832 + L2 LINE L2 2365 2649 -665 573 320 13 53 chr6 6869768 6869821 -182409733 - MIR SINE MIR -1 261 207 2215 107 0 10 chr6 6869821 6870120 -182409434 + AluSg SINE Alu 1 296 -14 573 320 13 53 chr6 6870120 6870291 -182409263 - MIR SINE MIR -55 207 46 2001 170 0 0 chr6 6870433 6870745 -182408809 - AluJb SINE Alu 0 312 1 268 287 96 44 chr6 6870756 6870892 -182408662 + Charlie7 DNA MER1_type 142 284 -2328 276 100 0 0 chr6 6870984 6871024 -182408530 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 1290 224 110 107 chr6 6871051 6871932 -182407622 + Charlie7 DNA MER1_type 1485 2371 -241 2473 68 3 0 chr6 6871932 6872225 -182407329 - AluY SINE Alu -17 294 1 1290 224 110 107 chr6 6872225 6872332 -182407222 + Charlie7 DNA MER1_type 2371 2476 -136 21 36 0 0 chr6 6872429 6872457 -182407097 + AT_rich Low_complexity Low_complexity 1 28 0 1998 155 0 10 chr6 6872697 6873006 -182406548 - AluSx SINE Alu -6 306 1 1049 153 5 37 chr6 6873008 6873198 -182406356 - L1PA15 LINE L1 0 6165 5982 240 111 0 0 chr6 6873198 6873234 -182406320 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2077 104 17 0 chr6 6873234 6873523 -182406031 - AluY SINE Alu -1 310 17 1922 150 0 0 chr6 6873523 6873801 -182405753 - AluJb SINE Alu -32 280 1 211 277 31 0 chr6 6873962 6874027 -182405527 + CT-rich Low_complexity Low_complexity 1 67 0 416 224 51 10 chr6 6876222 6876320 -182403234 + MIR SINE MIR 87 188 -74 786 183 0 0 chr6 6876494 6876620 -182402934 + FLAM_C SINE Alu 1 126 -17 364 214 10 10 chr6 6876673 6876776 -182402778 + GA-rich Low_complexity Low_complexity 1 103 0 220 39 0 0 chr6 6876781 6876807 -182402747 + (GA)n Simple_repeat Simple_repeat 2 27 0 355 302 24 48 chr6 6878126 6878252 -182401302 + MIR3 SINE MIR 63 185 -23 345 24 0 0 chr6 6879243 6879285 -182400269 + (A)n Simple_repeat Simple_repeat 1 42 0 356 246 6 0 chr6 6879550 6879725 -182399829 + CT-rich Low_complexity Low_complexity 2 177 0 405 0 0 0 chr6 6879727 6879772 -182399782 + (CA)n Simple_repeat Simple_repeat 1 45 0 220 319 56 0 chr6 6880149 6880221 -182399333 - MIR SINE MIR -68 140 65 2359 112 0 0 chr6 6880344 6880647 -182398907 - AluSx SINE Alu -9 303 1 427 255 134 13 chr6 6882495 6882644 -182396910 - MIR SINE MIR -76 186 20 224 203 8 98 chr6 6883636 6883769 -182395785 + CT-rich Low_complexity Low_complexity 1 121 0 326 288 102 0 chr6 6883901 6884019 -182395535 + MLT1J LTR MaLR 67 196 -315 370 185 12 0 chr6 6884041 6884122 -182395432 - FRAM/FAM SINE Alu -93 82 1 412 313 0 8 chr6 6884125 6884253 -182395301 + MLT1J LTR MaLR 184 310 -201 296 269 40 54 chr6 6884980 6885129 -182394425 + LTR16C LTR ERVL 345 491 0 510 243 40 28 chr6 6885129 6885306 -182394248 + MLT1J LTR MaLR 311 489 -22 2033 116 42 0 chr6 6885331 6885616 -182393938 + AluSx SINE Alu 1 297 -15 395 289 159 32 chr6 6885968 6886245 -182393309 + MLT1I LTR MaLR 22 333 -76 1088 141 0 0 chr6 6887808 6887964 -182391590 - FRAM SINE Alu -12 164 9 251 250 31 73 chr6 6888172 6888268 -182391286 + MIR3 SINE MIR 108 199 -9 500 259 61 33 chr6 6888654 6888820 -182390734 + L1MB8 LINE L1 5944 6119 -59 2073 135 0 22 chr6 6888820 6889132 -182390422 - AluSx SINE Alu -7 305 1 500 259 61 33 chr6 6889132 6889177 -182390377 + L1MB8 LINE L1 6119 6161 -17 677 313 25 10 chr6 6889751 6889952 -182389602 + MIR SINE MIR 51 254 -8 216 97 0 0 chr6 6890825 6890856 -182388698 + (GGA)n Simple_repeat Simple_repeat 2 32 0 628 218 14 49 chr6 6891568 6891710 -182387844 - FLAM_A SINE Alu 0 142 6 281 254 203 17 chr6 6891876 6891994 -182387560 + MIR SINE MIR 106 245 -17 256 284 165 31 chr6 6891991 6892118 -182387436 - MIR3 SINE MIR -35 173 30 * 2063 74 67 7 chr6 6892132 6892470 -182387084 - AluY SINE Alu 0 354 1 1287 55 0 0 chr6 6892470 6892615 -182386939 - AluSq/x SINE Alu -167 145 1 341 88 35 0 chr6 6893182 6893239 -182386315 + CT-rich Low_complexity Low_complexity 1 59 0 320 307 79 18 chr6 6893246 6893360 -182386194 - L2 LINE L2 0 3313 3193 330 177 21 115 chr6 6894439 6894498 -182385056 - MER103 DNA DNA -77 89 41 1663 166 10 40 chr6 6894498 6894799 -182384755 - AluJo SINE Alu -20 292 1 330 177 21 115 chr6 6894799 6894835 -182384719 - MER103 DNA DNA -125 41 3 213 211 0 0 chr6 6894919 6894957 -182384597 + (CA)n Simple_repeat Simple_repeat 2 39 0 1073 248 56 12 chr6 6895432 6895751 -182383803 - MER46C DNA MER2_type 0 338 6 2363 89 0 16 chr6 6896170 6896484 -182383070 - AluY SINE Alu -2 309 1 2213 109 23 0 chr6 6896988 6897191 -182382363 - AluSg SINE Alu 0 329 115 243 0 0 0 chr6 6897191 6897218 -182382336 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2213 109 23 0 chr6 6897218 6897336 -182382218 - AluSg SINE Alu -214 115 1 267 102 61 20 chr6 6898089 6898138 -182381416 + MIR SINE MIR 199 249 -13 2346 90 3 22 chr6 6898304 6898615 -182380939 + AluSp SINE Alu 1 305 -8 1318 213 117 47 chr6 6898621 6898830 -182380724 + L1MD2 LINE L1 5914 6107 -252 180 0 0 0 chr6 6898830 6898850 -182380704 + (CA)n Simple_repeat Simple_repeat 1 20 0 1318 213 117 47 chr6 6898850 6899043 -182380511 + L1MD2 LINE L1 6107 6344 -15 320 310 60 10 chr6 6899206 6899306 -182380248 - MER91C DNA MER1_type -35 105 1 2170 116 0 0 chr6 6901939 6902246 -182377308 - AluSq SINE Alu 0 307 1 266 226 200 43 chr6 6903109 6903224 -182376330 + MIR SINE MIR 124 256 -6 236 318 79 16 chr6 6903325 6903451 -182376103 - MARNA DNA Mariner -380 206 73 2266 69 0 34 chr6 6903739 6904064 -182375490 + AluY SINE Alu 3 317 0 2201 137 0 0 chr6 6904231 6904538 -182375016 - AluSx SINE Alu -5 307 1 599 308 67 5 chr6 6904540 6904748 -182374806 - MIR SINE MIR -36 226 6 2463 149 38 33 chr6 6904909 6905333 -182374221 + MSTB LTR MaLR 1 426 0 2357 143 30 40 chr6 6906643 6906975 -182372579 - MSTC LTR MaLR -1 427 98 2582 63 0 0 chr6 6906975 6907277 -182372277 - AluY SINE Alu -9 302 1 2357 143 30 40 chr6 6907277 6907372 -182372182 - MSTC LTR MaLR -330 98 4 584 266 104 57 chr6 6908996 6909399 -182370155 - LTR16A LTR ERVL -7 443 22 358 218 89 65 chr6 6909537 6909638 -182369916 + L2 LINE L2 3186 3292 -21 2263 73 0 13 chr6 6909638 6909938 -182369616 - AluY SINE Alu -15 296 1 358 218 89 65 chr6 6909938 6909960 -182369594 + L2 LINE L2 3292 3312 -1 204 315 79 47 chr6 6910135 6910262 -182369292 + MIR3 SINE MIR 73 203 -5 2175 81 3 0 chr6 6910578 6910883 -182368671 + AluSp SINE Alu 1 306 0 194 314 0 0 chr6 6910898 6910949 -182368605 + L2 LINE L2 3213 3263 -9 362 301 90 8 chr6 6911282 6911415 -182368139 - MIR SINE MIR -118 144 1 619 219 89 89 chr6 6911545 6911860 -182367694 - MER102a DNA MER1_type -15 315 1 692 224 5 57 chr6 6912021 6912231 -182367323 - HAL1 LINE L1 -119 2388 2190 1893 204 9 61 chr6 6912274 6912734 -182366820 - MER41B LTR ERV1 -38 597 162 1739 258 108 14 chr6 6912795 6913435 -182366119 - HAL1 LINE L1 -304 2203 1504 7554 26 1 1 chr6 6913442 6914728 -182364826 + L1PA4 LINE L1 4882 6167 0 681 129 9 35 chr6 6915281 6915397 -182364157 + AluSq/x SINE Alu 23 135 -177 225 229 17 68 chr6 6915400 6915518 -182364036 - L1MC5 LINE L1 -247 7714 7603 380 279 27 20 chr6 6915740 6915887 -182363667 - L1MC5 LINE L1 -522 7439 7292 * 459 330 58 10 chr6 6915855 6916149 -182363405 - L1MC4a LINE L1 -393 7415 7108 379 83 0 0 chr6 6916850 6916910 -182362644 - L1PA7 LINE L1 -2 6152 6093 1963 108 0 0 chr6 6916991 6917259 -182362295 - AluSx SINE Alu -44 268 1 27 0 0 0 chr6 6917925 6917952 -182361602 + AT_rich Low_complexity Low_complexity 1 27 0 585 67 13 0 chr6 6918567 6918642 -182360912 + AluSq/x SINE Alu 64 139 -173 1676 100 4 0 chr6 6918642 6918872 -182360682 + AluSp SINE Alu 68 298 -15 497 292 152 0 chr6 6918976 6919147 -182360407 + MIR SINE MIR 29 225 -37 23 54 0 0 chr6 6919306 6919343 -182360211 + AT_rich Low_complexity Low_complexity 1 37 0 207 111 0 28 chr6 6919424 6919460 -182360094 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 185 35 69 0 chr6 6920532 6920561 -182358993 + T-rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 6920581 6920604 -182358950 + (TA)n Simple_repeat Simple_repeat 1 23 0 551 235 190 6 chr6 6920605 6920784 -182358770 + MER112 DNA MER1_type 49 260 0 1894 131 36 162 chr6 6920908 6920965 -182358589 - MER31B LTR ERV1 -7 459 396 764 168 0 15 chr6 6920965 6921096 -182358458 + FLAM_C SINE Alu 2 130 -3 1894 131 36 162 chr6 6921096 6921563 -182357991 - MER31B LTR ERV1 -70 396 1 2004 271 99 74 chr6 6921738 6921773 -182357781 + HAL1 LINE L1 116 149 -2358 261 0 0 0 chr6 6921773 6921802 -182357752 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2004 271 99 74 chr6 6921802 6923448 -182356106 + HAL1 LINE L1 149 1839 -668 2438 66 3 0 chr6 6923590 6923893 -182355661 - AluSp SINE Alu -9 304 1 454 235 63 75 chr6 6924378 6924646 -182354908 + HAL1 LINE L1 1974 2238 -269 819 251 215 36 chr6 6924667 6925053 -182354501 - LTR33 LTR ERVL -64 457 3 286 240 62 54 chr6 6925158 6925287 -182354267 + HAL1 LINE L1 2375 2504 -3 238 25 25 25 chr6 6925313 6925353 -182354201 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 387 286 182 0 chr6 6925403 6925557 -182353997 + MIR SINE MIR 37 218 -44 263 282 24 47 chr6 6925656 6925741 -182353813 + L2 LINE L2 3184 3266 -6 273 321 0 0 chr6 6926672 6926753 -182352801 + MLT1L LTR MaLR 412 492 -123 24 32 0 0 chr6 6926940 6926971 -182352583 + AT_rich Low_complexity Low_complexity 1 31 0 811 165 0 0 chr6 6926971 6927092 -182352462 - FLAM_A SINE Alu -12 121 1 347 328 16 8 chr6 6927660 6927788 -182351766 - MER5A DNA MER1_type -5 184 56 312 233 42 42 chr6 6927684 6927804 -182351750 + MER5A DNA MER1_type 41 160 -29 * 1747 158 0 10 chr6 6927891 6928188 -182351366 - AluJb SINE Alu -1 311 18 353 164 14 0 chr6 6929550 6929623 -182349931 + GA-rich Low_complexity Low_complexity 3 76 0 287 250 10 87 chr6 6930038 6930095 -182349459 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6930095 6930124 -182349430 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 287 250 10 87 chr6 6930124 6930170 -182349384 + MER21B LTR ERV1 59 107 -756 2671 229 116 31 chr6 6930170 6930936 -182348618 + MER21B LTR ERV1 22 852 -11 883 177 58 22 chr6 6931059 6931285 -182348269 + MER33 DNA MER1_type 9 242 -82 2623 138 52 54 chr6 6931301 6931320 -182348234 - L1MB3 LINE L1 -17 6166 6148 2122 106 0 0 chr6 6931320 6931613 -182347941 - AluSg SINE Alu -17 293 1 2623 138 52 54 chr6 6931613 6932074 -182347480 - L1MB3 LINE L1 -35 6148 5617 2167 110 3 0 chr6 6932074 6932383 -182347171 - AluSg SINE Alu 0 310 1 2623 138 52 54 chr6 6932383 6932654 -182346900 - L1MB3 LINE L1 -566 5617 5347 573 106 0 43 chr6 6932655 6932749 -182346805 + MER33 DNA MER1_type 273 362 -1 2119 110 3 3 chr6 6933171 6933471 -182346083 + AluSq SINE Alu 1 300 -13 2070 119 10 3 chr6 6933920 6934231 -182345323 - AluSq SINE Alu 0 313 1 2187 105 0 3 chr6 6934501 6934814 -182344740 + AluSx SINE Alu 1 312 0 218 300 27 55 chr6 6934976 6935086 -182344468 + MIR SINE MIR 98 204 -58 1617 163 7 14 chr6 6935351 6935646 -182343908 + AluJo SINE Alu 1 293 -19 297 206 98 10 chr6 6936972 6937074 -182342480 + MER53 DNA DNA 10 120 -69 4672 158 144 31 chr6 6938656 6940063 -182339491 - pTR5 LTR ERV1 0 2438 742 316 273 120 13 chr6 6940324 6940474 -182339080 - L2 LINE L2 -328 2985 2820 2096 269 106 55 chr6 6940484 6940773 -182338781 - L2 LINE L2 -650 2664 2391 2042 63 0 0 chr6 6940773 6941025 -182338529 - L1PA6 LINE L1 -4 6150 5899 2096 269 106 55 chr6 6941025 6941298 -182338256 - L2 LINE L2 -923 2391 2133 1272 230 26 10 chr6 6941298 6941602 -182337952 + AluJb SINE Alu 4 312 0 2096 269 106 55 chr6 6941602 6941761 -182337793 - L2 LINE L2 -1181 2133 1984 2066 140 110 8 chr6 6941761 6942153 -182337401 + MSTB1 LTR MaLR 1 432 0 2096 269 106 55 chr6 6942153 6942633 -182336921 - L2 LINE L2 -1330 1984 1400 1401 155 83 31 chr6 6942649 6942939 -182336615 + MSTB LTR MaLR 1 305 -121 250 91 0 0 chr6 6942948 6942981 -182336573 - MER58 DNA MER1_type -2216 204 172 662 78 12 18 chr6 6942982 6943237 -182336317 + AluSg SINE Alu 1 308 -4 717 204 117 0 chr6 6943237 6943399 -182336155 - MER58 DNA MER1_type -2239 181 1 31 20 0 20 chr6 6944170 6944199 -182335355 + AT_rich Low_complexity Low_complexity 1 30 -18 1915 103 13 43 chr6 6944199 6944499 -182335055 - AluSx SINE Alu -21 291 1 31 20 0 20 chr6 6944499 6944518 -182335036 + AT_rich Low_complexity Low_complexity 30 48 0 537 168 9 62 chr6 6944596 6944709 -182334845 - MSTA LTR MaLR -321 107 1 2067 109 3 7 chr6 6944813 6945115 -182334439 - AluSx SINE Alu -11 301 1 509 279 90 31 chr6 6945265 6945487 -182334067 + MIR SINE MIR 20 254 -8 240 214 0 0 chr6 6945562 6945604 -182333950 + L2 LINE L2 3258 3299 -14 2073 97 30 3 chr6 6945916 6946214 -182333340 + AluSc SINE Alu 1 306 -3 189 0 0 0 chr6 6946967 6946988 -182332566 + (TG)n Simple_repeat Simple_repeat 2 22 0 2832 168 10 27 chr6 6947305 6947852 -182331702 + L1MB3 LINE L1 5633 6160 -15 2122 117 0 0 chr6 6947968 6948268 -182331286 + AluSx SINE Alu 1 300 -12 421 149 11 11 chr6 6948268 6948355 -182331199 + GA-rich Low_complexity Low_complexity 1 87 0 211 277 31 0 chr6 6999605 6999670 -182279884 + GA-rich Low_complexity Low_complexity 1 67 0 1776 154 0 0 chr6 6999831 7000111 -182279443 + AluJb SINE Alu 1 280 -32 1941 104 17 0 chr6 7000111 7000398 -182279156 + AluY SINE Alu 17 310 -1 240 111 0 0 chr6 7000398 7000434 -182279120 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1043 153 5 37 chr6 7000434 7000624 -182278930 + L1PA15 LINE L1 5982 6165 0 1821 160 0 10 chr6 7000626 7000933 -182278621 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr6 7001173 7001201 -182278353 + AT_rich Low_complexity Low_complexity 1 28 0 1486 218 113 109 chr6 7001309 7001405 -182278149 - Charlie7 DNA MER1_type -147 2465 2371 2331 68 3 0 chr6 7001405 7001698 -182277856 + AluY SINE Alu 1 294 -17 1486 218 113 109 chr6 7001698 7002579 -182276975 - Charlie7 DNA MER1_type -241 2371 1485 242 246 0 0 chr6 7002603 7002660 -182276894 + L1MC4 LINE L1 6649 6705 -1337 302 287 96 44 chr6 7002738 7002874 -182276680 - Charlie7 DNA MER1_type -2328 284 142 1844 170 0 0 chr6 7002885 7003197 -182276357 + AluJb SINE Alu 1 312 0 577 320 13 53 chr6 7003339 7003510 -182276044 + MIR SINE MIR 46 207 -55 2075 104 0 10 chr6 7003510 7003808 -182275746 - AluSg SINE Alu -15 295 1 577 320 13 53 chr6 7003808 7003861 -182275693 + MIR SINE MIR 207 261 -1 399 367 67 11 chr6 7003907 7004177 -182275377 - L2 LINE L2 -665 2649 2365 817 236 132 0 chr6 7004177 7004389 -182275165 - MIR SINE MIR -10 252 13 2201 98 3 0 chr6 7005555 7005852 -182273702 + AluSx SINE Alu 1 298 -14 293 184 35 14 chr6 7006828 7006969 -182272585 + CT-rich Low_complexity Low_complexity 1 144 0 901 311 86 6 chr6 7007170 7007508 -182272046 - LTR16C LTR ERVL -2 489 125 274 156 31 0 chr6 7007586 7007650 -182271904 + (TA)n Simple_repeat Simple_repeat 1 66 0 305 218 24 48 chr6 7007946 7008070 -182271484 + LTR67 LTR ERVL 426 546 -11 298 273 0 0 chr6 7008245 7008311 -182271243 + L2 LINE L2 3205 3270 -2 525 208 0 10 chr6 7008531 7008632 -182270922 + MER45A DNA AcHobo 79 178 0 744 86 0 0 chr6 7009182 7009287 -182270267 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 372 77 0 0 chr6 7009387 7009439 -182270115 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 360 242 17 22 chr6 7009396 7009574 -182269980 + GA-rich Low_complexity Low_complexity 4 180 0 * 21 36 0 0 chr6 7010424 7010452 -182269102 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 7010876 7010899 -182268655 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 531 244 30 75 chr6 7011174 7011375 -182268179 + MER112 DNA MER1_type 52 243 -17 1938 118 20 0 chr6 7011377 7011730 -182267824 - AluSx SINE Alu 0 359 1 272 218 90 13 chr6 7012157 7012235 -182267319 + LTR33A LTR ERVL 440 523 0 1779 129 0 0 chr6 7012525 7012780 -182266774 - AluSx SINE Alu -56 256 2 409 210 25 4 chr6 7013195 7013314 -182266240 + MER5A DNA MER1_type 24 186 -3 270 327 80 43 chr6 7013401 7013563 -182265991 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 7013768 7013942 -182265612 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 7014475 7014556 -182264998 + GA-rich Low_complexity Low_complexity 4 83 0 933 143 0 0 chr6 7016272 7016405 -182263149 - FLAM_C SINE Alu 0 133 1 7183 159 88 104 chr6 7016660 7017259 -182262295 - L1MC3 LINE L1 0 7785 7177 234 266 0 16 chr6 7017259 7017323 -182262231 - MLT1F1 LTR MaLR -460 107 45 7183 159 88 104 chr6 7017323 7018664 -182260890 - L1MC3 LINE L1 -608 7177 5810 465 285 201 11 chr6 7018737 7019000 -182260554 + L2 LINE L2 3001 3313 0 1851 119 25 14 chr6 7019270 7019556 -182259998 + AluSx SINE Alu 1 289 -23 1851 105 0 66 chr6 7019556 7019905 -182259649 + AluSx SINE Alu 1 329 0 1081 273 133 8 chr6 7020017 7020401 -182259153 + MER115 DNA AcHobo 5 436 -257 583 305 65 40 chr6 7020787 7021217 -182258337 - L1MC3 LINE L1 -405 5716 5276 1892 167 0 0 chr6 7021577 7021889 -182257665 - AluSx SINE Alu 0 312 1 226 361 139 5 chr6 7022093 7022309 -182257245 - L2 LINE L2 -1 3271 3027 636 177 18 0 chr6 7022315 7022428 -182257126 + FRAM SINE Alu 44 158 -18 1500 105 5 0 chr6 7022447 7022657 -182256897 - AluSg/x SINE Alu -17 293 83 187 86 57 29 chr6 7022969 7023004 -182256550 - MER5A DNA MER1_type -26 163 128 2209 90 0 3 chr6 7023007 7023308 -182256246 + AluSc SINE Alu 1 300 -9 610 281 77 108 chr6 7023617 7024009 -182255545 + MLT1K LTR MaLR 134 510 -78 657 178 31 8 chr6 7024009 7024138 -182255416 - FLAM_C SINE Alu 0 133 2 610 281 77 108 chr6 7024138 7024215 -182255339 + MLT1K LTR MaLR 510 588 0 1276 203 8 4 chr6 7025205 7025442 -182254112 + MER8 DNA MER2_type 2 239 0 822 201 12 6 chr6 7025442 7025606 -182253948 + MER58B DNA MER1_type 177 341 0 461 201 21 111 chr6 7025811 7025913 -182253641 - L2 LINE L2 -1 3312 3225 2081 133 0 13 chr6 7025913 7026230 -182253324 + AluSq SINE Alu 1 313 0 461 201 21 111 chr6 7026230 7026271 -182253283 - L2 LINE L2 -88 3225 3182 240 200 71 14 chr6 7026307 7026377 -182253177 - MIR SINE MIR -97 111 38 1952 105 10 10 chr6 7027227 7027521 -182252033 + AluSx SINE Alu 1 294 -18 715 250 71 95 chr6 7027819 7028038 -182251516 - L2 LINE L2 0 3313 3090 667 144 127 0 chr6 7028038 7028156 -182251398 + AluJo SINE Alu 1 133 -169 715 250 71 95 chr6 7028156 7028169 -182251385 - L2 LINE L2 -223 3090 3078 2259 105 0 6 chr6 7028169 7028483 -182251071 + AluSx SINE Alu 1 312 0 1245 202 73 35 chr6 7028487 7028774 -182250780 + AluJb SINE Alu 2 299 -3 715 250 71 95 chr6 7028774 7029031 -182250523 - L2 LINE L2 -238 3075 2830 262 278 56 0 chr6 7029227 7029317 -182250237 + L2 LINE L2 3217 3311 -2 224 279 63 0 chr6 7029977 7030056 -182249498 - MER5A DNA MER1_type -73 116 33 676 239 117 5 chr6 7030137 7030334 -182249220 - MIR SINE MIR -26 236 18 197 203 102 34 chr6 7031704 7031763 -182247791 - MIR3 SINE MIR -133 75 13 1315 215 39 16 chr6 7032058 7032370 -182247184 - MER33 DNA MER1_type 0 324 6 296 100 0 20 chr6 7032512 7032562 -182246992 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 978 134 0 0 chr6 7032644 7032793 -182246761 + AluJo SINE Alu 134 282 -30 21 0 0 0 chr6 7032793 7032814 -182246740 + AT_rich Low_complexity Low_complexity 1 21 0 2082 119 3 0 chr6 7032985 7033288 -182246266 + AluSq SINE Alu 1 304 -9 243 88 0 0 chr6 7033786 7033820 -182245734 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr6 7034098 7034120 -182245434 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 209 156 0 0 chr6 7034550 7034582 -182244972 + MIR SINE MIR 114 145 -63 968 227 158 27 chr6 7034614 7035020 -182244534 - LTR16B LTR ERVL -4 460 2 2285 148 16 3 chr6 7035038 7035423 -182244131 - MLT1B LTR MaLR 0 390 1 348 331 39 6 chr6 7035505 7035683 -182243871 - HERV16 LTR ERVL -361 5403 5220 268 265 116 48 chr6 7036059 7036206 -182243348 - HERV16 LTR ERVL -4435 561 405 213 265 229 0 chr6 7036489 7036572 -182242982 + MIR SINE MIR 101 202 -60 1684 212 8 33 chr6 7036578 7036941 -182242613 + MLT1A1 LTR MaLR 1 354 -11 481 340 71 30 chr6 7036984 7037281 -182242273 + L1MC4a LINE L1 4619 4927 -1219 376 233 0 23 chr6 7037348 7037434 -182242120 - MER96 DNA MER1_type? -1 174 91 292 305 130 7 chr6 7037513 7037667 -182241887 + L1MC4a LINE L1 5729 5901 -1907 2346 58 0 0 chr6 7038384 7038675 -182240879 - AluY SINE Alu -14 297 7 27 0 0 0 chr6 7038724 7038751 -182240803 + AT_rich Low_complexity Low_complexity 1 27 0 2874 150 41 44 chr6 7038753 7039318 -182240236 + L1MB8 LINE L1 5476 6038 -140 1818 188 49 10 chr6 7039319 7039728 -182239826 - L1MC1 LINE L1 0 6333 5909 738 180 20 13 chr6 7039729 7039879 -182239675 + L1MB8 LINE L1 6027 6177 -1 1674 140 0 4 chr6 7040294 7040558 -182238996 - AluJo SINE Alu -9 303 41 611 145 192 87 chr6 7040697 7040869 -182238685 - MER20 DNA MER1_type -1 218 29 225 65 0 0 chr6 7040874 7040905 -182238649 + (TC)n Simple_repeat Simple_repeat 2 32 0 336 326 64 28 chr6 7041320 7041461 -182238093 - MIR SINE MIR -12 250 105 573 157 352 179 chr6 7041475 7041708 -182237846 + MLT1H LTR MaLR 14 206 -343 2293 89 0 0 chr6 7041708 7042012 -182237542 + AluY SINE Alu 1 304 -7 573 157 352 179 chr6 7042012 7042213 -182237341 + MLT1H LTR MaLR 206 549 0 723 207 47 61 chr6 7043002 7043215 -182236339 + MER63A DNA MER1_type 1 210 0 682 313 78 14 chr6 7043242 7043526 -182236028 - MLT1J LTR MaLR 0 511 210 931 135 0 59 chr6 7043573 7043743 -182235811 - AluJo SINE Alu -17 295 136 264 279 171 16 chr6 7043806 7043935 -182235619 - MLT1J LTR MaLR -362 149 1 304 261 52 0 chr6 7044181 7044296 -182235258 - MER113 DNA MER1_type? -399 122 2 294 203 0 16 chr6 7044313 7044377 -182235177 - MIR SINE MIR -61 147 85 1789 133 11 11 chr6 7044425 7044710 -182234844 + AluJb SINE Alu 1 285 -27 217 369 67 34 chr6 7045445 7045624 -182233930 + L3b LINE CR1 1372 1556 -27 928 249 39 35 chr6 7046554 7046811 -182232743 - MLT1J LTR MaLR 0 511 254 894 250 169 43 chr6 7046815 7047299 -182232255 + MLT1H LTR MaLR 1 545 -4 2257 90 3 0 chr6 7047603 7047939 -182231615 + AluSx SINE Alu 1 337 0 27 48 0 32 chr6 7047957 7047981 -182231573 + AT_rich Low_complexity Low_complexity 1 24 -37 760 171 0 23 chr6 7047981 7048110 -182231444 - AluJo SINE Alu -176 126 1 27 48 0 32 chr6 7048110 7048148 -182231406 + AT_rich Low_complexity Low_complexity 24 61 0 363 347 70 14 chr6 7048359 7048572 -182230982 + L3b LINE CR1 1351 1575 -8 300 255 39 20 chr6 7048609 7048711 -182230843 - L2 LINE L2 -32 3281 3178 593 165 122 17 chr6 7048845 7048960 -182230594 + FLAM_C SINE Alu 1 127 -6 1540 248 118 83 chr6 7049110 7049552 -182230002 + Charlie2a DNA MER1_type 36 461 -2401 237 83 0 0 chr6 7049552 7049588 -182229966 + (TG)n Simple_repeat Simple_repeat 1 36 0 1540 248 118 83 chr6 7049588 7049931 -182229623 + Charlie2a DNA MER1_type 461 791 -2071 6530 42 0 0 chr6 7049931 7050701 -182228853 + L1PA6 LINE L1 5384 6153 -1 1540 248 118 83 chr6 7050701 7050775 -182228779 + Charlie2a DNA MER1_type 791 861 -2001 1837 102 0 8 chr6 7050775 7051030 -182228524 + AluSx SINE Alu 47 299 -13 1540 248 118 83 chr6 7051030 7051070 -182228484 + Charlie2a DNA MER1_type 861 968 -1894 631 331 35 3 chr6 7051136 7051426 -182228128 - L1MC4a LINE L1 -1878 5930 5632 1998 128 3 0 chr6 7052101 7052391 -182227163 + AluSq SINE Alu 6 296 -17 541 225 0 180 chr6 7052420 7052687 -182226867 - MIR SINE MIR -8 254 36 360 0 0 0 chr6 7052692 7052732 -182226822 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 259 80 35 chr6 7052750 7052828 -182226726 - MLT1J LTR MaLR -3 508 435 2250 113 0 0 chr6 7052828 7053137 -182226417 + AluSg SINE Alu 1 309 -1 1423 259 80 35 chr6 7053137 7053544 -182226010 - MLT1J LTR MaLR -76 435 1 373 307 246 34 chr6 7053557 7054410 -182225144 - L3 LINE CR1 0 1577 544 400 245 93 29 chr6 7054602 7054741 -182224813 - L2 LINE L2 0 3272 3125 * 594 267 99 29 chr6 7054732 7054966 -182224588 + L2 LINE L2 2682 2898 -415 579 53 0 0 chr6 7054966 7055041 -182224513 + (CATAC)n Simple_repeat Simple_repeat 2 76 0 594 267 99 29 chr6 7055041 7055317 -182224237 + L2 LINE L2 2898 3233 -80 273 119 0 0 chr6 7055374 7055416 -182224138 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 295 275 161 34 chr6 7055443 7055592 -182223962 - L2 LINE L2 -176 3096 2929 302 401 70 13 chr6 7055692 7055905 -182223649 - L2 LINE L2 -508 2806 2606 580 274 60 19 chr6 7055905 7055996 -182223558 - MER58A DNA MER1_type -2196 224 138 1916 146 3 3 chr6 7055996 7056304 -182223250 + AluJo SINE Alu 1 308 -4 1686 145 10 27 chr6 7056313 7056610 -182222944 + AluJb SINE Alu 1 292 -20 580 274 60 19 chr6 7056610 7056723 -182222831 - MER58A DNA MER1_type -2289 131 1 302 401 70 13 chr6 7056723 7056811 -182222743 - L2 LINE L2 -708 2606 2488 187 123 26 61 chr6 7057643 7057676 -182221878 + A-rich Low_complexity Low_complexity 2 35 -76 846 141 0 0 chr6 7057676 7057797 -182221757 + FLAM_C SINE Alu 1 121 -12 187 123 26 61 chr6 7057797 7057877 -182221677 + A-rich Low_complexity Low_complexity 35 111 0 2210 97 0 7 chr6 7060433 7060741 -182218813 + AluY SINE Alu 1 306 -5 2085 101 0 33 chr6 7060745 7061051 -182218503 + AluSg SINE Alu 1 296 -14 1652 180 20 3 chr6 7061057 7061357 -182218197 + L1MB3 LINE L1 5815 6119 -64 733 184 73 0 chr6 7061362 7061498 -182218056 + AluJb SINE Alu 150 295 -17 317 150 0 150 chr6 7061498 7061542 -182218012 + L1MB2 LINE L1 6097 6125 -46 2183 75 27 10 chr6 7061542 7061836 -182217718 - AluSx SINE Alu -13 299 1 317 150 0 150 chr6 7061836 7061871 -182217683 + L1MB2 LINE L1 6125 6164 -7 354 301 199 5 chr6 7062258 7062444 -182217110 + MIR SINE MIR 4 225 -37 671 288 142 34 chr6 7062770 7063207 -182216347 - LTR33A LTR ERVL -16 507 24 185 235 98 0 chr6 7063935 7063986 -182215568 - MIR SINE MIR -97 165 110 209 351 0 14 chr6 7064152 7064226 -182215328 + GA-rich Low_complexity Low_complexity 2 74 0 219 232 104 48 chr6 7065817 7065942 -182213612 + MIR SINE MIR 17 148 -60 310 255 106 0 chr6 7066178 7066272 -182213282 + MER5A DNA MER1_type 2 105 -84 875 206 33 0 chr6 7066341 7066521 -182213033 - MER5A DNA MER1_type -3 186 1 2038 123 3 0 chr6 7066824 7067126 -182212428 - AluSx SINE Alu -9 303 1 1867 148 0 3 chr6 7067301 7067599 -182211955 + AluJb SINE Alu 1 297 -15 1314 192 16 4 chr6 7067893 7068167 -182211387 + AluJo SINE Alu 30 306 0 356 277 0 27 chr6 7068220 7068332 -182211222 - L1ME LINE L1 -307 5814 5706 1916 82 4 0 chr6 7068428 7068684 -182210870 + L1PA14 LINE L1 5728 5984 -177 1133 162 5 0 chr6 7068784 7068988 -182210566 + L1PA14 LINE L1 5955 6159 -2 261 302 84 20 chr6 7069025 7069227 -182210327 - L1ME LINE L1 -659 5511 5297 2237 185 49 29 chr6 7069730 7070221 -182209333 + LTR40a LTR ERVL 19 519 0 404 271 235 28 chr6 7070400 7070651 -182208903 + L3 LINE CR1 1252 1554 -23 2031 88 32 0 chr6 7071020 7071305 -182208249 - AluSp SINE Alu -19 294 1 440 213 11 11 chr6 7071698 7071792 -182207762 + MIR SINE MIR 46 139 -69 1982 133 0 0 chr6 7071842 7072142 -182207412 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr6 7072143 7072171 -182207383 + (TA)n Simple_repeat Simple_repeat 2 29 0 1767 156 32 0 chr6 7072172 7072454 -182207100 + AluJb SINE Alu 1 291 -21 990 184 36 31 chr6 7072459 7072682 -182206872 + L1MC1 LINE L1 6107 6330 -3 222 333 90 42 chr6 7073997 7074186 -182205368 - L2 LINE L2 -2 3270 3073 729 142 24 39 chr6 7074531 7074658 -182204896 - FLAM_A SINE Alu -10 132 8 1403 193 11 4 chr6 7074662 7074932 -182204622 - AluJb SINE Alu -40 272 1 185 262 83 48 chr6 7075114 7075198 -182204356 - L2 LINE L2 0 3272 3186 822 104 0 0 chr6 7075489 7075604 -182203950 - AluSg/x SINE Alu -10 302 188 3499 203 31 55 chr6 7075676 7076413 -182203141 - MER45B DNA AcHobo -213 827 112 2020 135 0 0 chr6 7076413 7076709 -182202845 + AluSx SINE Alu 1 296 -16 3499 203 31 55 chr6 7076709 7076819 -182202735 - MER45B DNA AcHobo -928 112 1 187 315 115 105 chr6 7077004 7077309 -182202245 - L2 LINE L2 -5 3267 2960 545 251 87 90 chr6 7077309 7077498 -182202056 - LTR16C LTR ERVL -2 489 300 1664 141 85 0 chr6 7077498 7077768 -182201786 - AluJo SINE Alu -15 297 5 545 251 87 90 chr6 7077768 7077944 -182201610 - LTR16C LTR ERVL -191 300 125 680 232 14 0 chr6 7078115 7078253 -182201301 - MER5A DNA MER1_type 0 189 50 380 286 207 0 chr6 7078603 7078743 -182200811 + LTR33 LTR ERVL 42 210 -311 248 301 82 20 chr6 7078865 7079011 -182200543 + LTR33 LTR ERVL 365 519 -2 191 61 30 0 chr6 7079242 7079275 -182200279 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 573 273 171 6 chr6 7080226 7080402 -182199152 - MIR SINE MIR -16 246 42 624 195 124 12 chr6 7080440 7080609 -182198945 + MER20 DNA MER1_type 32 219 0 1800 124 7 34 chr6 7081096 7081394 -182198160 + AluJb SINE Alu 1 290 -22 197 229 21 104 chr6 7082116 7082212 -182197342 - MER5A DNA MER1_type -93 96 9 2204 101 7 0 chr6 7082939 7083235 -182196319 - AluSx SINE Alu -14 298 1 632 260 13 104 chr6 7083261 7083492 -182196062 - MIR SINE MIR -10 252 43 521 153 0 0 chr6 7084521 7084606 -182194948 - AluJ/FRAM SINE Alu -1 311 227 1267 186 53 4 chr6 7084609 7084835 -182194719 + MLT1A1 LTR MaLR 127 363 -2 310 268 14 0 chr6 7084950 7085021 -182194533 - L2 LINE L2 -4 3309 3238 315 246 144 57 chr6 7085904 7086135 -182193419 - MIR SINE MIR 0 262 4 195 42 0 0 chr6 7086274 7086298 -182193256 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1325 137 121 19 chr6 7086322 7086578 -182192976 - AluJo SINE Alu -30 282 1 837 174 0 0 chr6 7087166 7087375 -182192179 - AluJb SINE Alu 0 342 134 219 271 164 21 chr6 7087680 7087820 -182191734 - MIR SINE MIR -12 250 91 1370 206 44 16 chr6 7087830 7088146 -182191408 - MER58B DNA MER1_type -16 325 1 231 261 14 43 chr6 7088244 7088313 -182191241 - MIR3 SINE MIR -134 74 8 519 66 0 0 chr6 7088906 7088982 -182190572 + (TG)n Simple_repeat Simple_repeat 1 76 0 315 302 56 24 chr6 7089384 7089510 -182190044 + L2 LINE L2 3127 3256 -16 267 236 57 89 chr6 7090099 7090222 -182189332 - L2 LINE L2 -16 3297 3179 180 265 0 41 chr6 7090228 7090277 -182189277 - L2 LINE L2 -3 3310 3264 291 54 0 0 chr6 7092233 7092270 -182187284 + (TG)n Simple_repeat Simple_repeat 1 37 0 1823 192 79 8 chr6 7094790 7095159 -182184395 - MSTD LTR MaLR 0 396 2 265 241 176 0 chr6 7096054 7096162 -182183392 - L2 LINE L2 -645 2669 2543 384 239 127 70 chr6 7096523 7096697 -182182857 + MIR SINE MIR 5 206 -56 2043 118 0 0 chr6 7096697 7096984 -182182570 + AluSx SINE Alu 1 287 -25 384 239 127 70 chr6 7096984 7097045 -182182509 + MIR SINE MIR 206 262 0 21 0 0 0 chr6 7097062 7097083 -182182471 + AT_rich Low_complexity Low_complexity 1 21 0 195 275 132 33 chr6 7098211 7098302 -182181252 + L2 LINE L2 3172 3271 -1 196 75 25 25 chr6 7098333 7098373 -182181181 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 232 342 25 0 chr6 7098465 7098544 -182181010 - MIR3 SINE MIR -2 206 126 472 292 30 55 chr6 7099198 7099400 -182180154 - MIR SINE MIR -53 209 13 829 187 18 6 chr6 7099693 7099864 -182179690 + FRAM SINE Alu 2 174 -2 2394 41 3 0 chr6 7101175 7101469 -182178085 - AluY SINE Alu -16 295 1 1583 180 3 10 chr6 7101589 7101900 -182177654 - AluJo SINE Alu -3 309 1 433 327 210 13 chr6 7102030 7102425 -182177129 - L3 LINE CR1 -20 1557 1085 805 216 72 19 chr6 7102439 7102647 -182176907 - MIR SINE MIR -10 252 34 745 237 17 6 chr6 7102663 7102836 -182176718 - MER5B DNA MER1_type -3 175 1 843 130 0 8 chr6 7103513 7103636 -182175918 - FLAM_C SINE Alu -11 122 1 584 120 10 0 chr6 7104814 7104914 -182174640 + (CA)n Simple_repeat Simple_repeat 2 102 0 258 167 0 0 chr6 7104914 7104968 -182174586 - MER4-int LTR ERV1 -5433 1165 1112 301 115 0 0 chr6 7104979 7105031 -182174523 - MER4-int LTR ERV1 -5436 1162 1111 207 162 0 0 chr6 7105032 7105069 -182174485 + (CA)n Simple_repeat Simple_repeat 1 37 0 258 135 39 0 chr6 7105069 7105121 -182174433 - MER4-int LTR ERV1 -5434 1164 1111 779 204 0 6 chr6 7105128 7105309 -182174245 + (CA)n Simple_repeat Simple_repeat 1 180 0 2059 142 0 0 chr6 7106012 7106323 -182173231 - AluSx SINE Alu -1 311 1 1794 168 3 0 chr6 7106856 7107148 -182172406 + AluJo SINE Alu 1 293 -19 362 272 191 0 chr6 7107384 7107531 -182172023 + MER5A DNA MER1_type 9 183 -6 1716 172 26 0 chr6 7107535 7107838 -182171716 + AluJb SINE Alu 1 311 -1 859 146 8 0 chr6 7108095 7108225 -182171329 + FLAM_C SINE Alu 1 131 -2 430 322 64 0 chr6 7108694 7108865 -182170689 + LTR33 LTR ERVL 2 183 -338 246 277 200 0 chr6 7108952 7109107 -182170447 + LTR33 LTR ERVL 327 512 -9 737 192 0 0 chr6 7109159 7109284 -182170270 - FLAM_A SINE Alu -8 125 1 2052 135 7 0 chr6 7109569 7109873 -182169681 - AluSx SINE Alu -6 306 1 2349 73 0 6 chr6 7109883 7110196 -182169358 - AluY SINE Alu 0 311 1 494 258 74 94 chr6 7110273 7110469 -182169085 + L1MB3 LINE L1 4742 4940 -1181 1817 138 0 10 chr6 7110469 7110766 -182168788 + AluSx SINE Alu 1 294 -18 494 258 74 94 chr6 7110766 7111102 -182168452 + L1MB3 LINE L1 4940 5281 -840 1759 154 26 13 chr6 7111102 7111408 -182168146 - 7SLRNA srpRNA srpRNA -6 314 5 494 258 74 94 chr6 7111408 7111583 -182167971 + L1MB3 LINE L1 5281 5458 -663 1575 137 98 0 chr6 7111583 7111839 -182167715 + AluSc SINE Alu 1 305 0 196 42 0 0 chr6 7111839 7111863 -182167691 + (TAAA)n Simple_repeat Simple_repeat 2 152 0 494 258 74 94 chr6 7111863 7111882 -182167672 + L1MB3 LINE L1 5458 5476 -645 2246 55 0 10 chr6 7111882 7112172 -182167382 + AluY SINE Alu 1 287 -24 494 258 74 94 chr6 7112172 7112386 -182167168 + L1MB3 LINE L1 5476 5662 -459 4686 152 29 39 chr6 7112424 7113688 -182165866 + pTR5 LTR ERV1 175 2294 -144 1461 133 27 19 chr6 7113753 7114016 -182165538 + AluSx SINE Alu 10 274 -38 1360 182 16 0 chr6 7114130 7114388 -182165166 - AluJo SINE Alu -50 262 1 284 0 28 0 chr6 7115386 7115422 -182164132 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2083 114 41 0 chr6 7115927 7116310 -182163244 + L1MB3 LINE L1 5658 6182 -1 792 145 8 0 chr6 7116317 7116434 -182163120 + FLAM_C SINE Alu 2 119 -24 2390 60 0 3 chr6 7116507 7116807 -182162747 - AluY SINE Alu -12 299 1 8997 45 9 3 chr6 7116861 7118746 -182160808 - L1PA6 LINE L1 0 6154 4250 36 0 0 0 chr6 7118760 7118796 -182160758 + AT_rich Low_complexity Low_complexity 1 36 0 218 253 121 81 chr6 7119386 7119485 -182160069 + MIR SINE MIR 49 151 -111 449 174 0 0 chr6 7119485 7119554 -182160000 + Tigger2 DNA MER2_type 1 69 -2649 * 2563 149 27 18 chr6 7119544 7119986 -182159568 + Tigger2 DNA MER2_type 2273 2718 0 1606 149 53 4 chr6 7119988 7120151 -182159403 - AluJo SINE Alu -17 295 111 369 0 0 0 chr6 7120151 7120192 -182159362 + (TG)n Simple_repeat Simple_repeat 2 42 0 1606 149 53 4 chr6 7120192 7120309 -182159245 - AluJo SINE Alu -201 111 1 335 60 20 0 chr6 7120350 7120400 -182159154 + (TA)n Simple_repeat Simple_repeat 2 52 0 1714 151 4 0 chr6 7121332 7121603 -182157951 - AluJo SINE Alu -40 272 1 385 256 90 45 chr6 7121615 7121654 -182157900 + MIR SINE MIR 111 147 -115 2238 75 0 0 chr6 7121654 7121956 -182157598 + AluY SINE Alu 3 304 0 385 256 90 45 chr6 7121956 7122048 -182157506 + MIR SINE MIR 147 249 -13 421 273 72 57 chr6 7122097 7122291 -182157263 - MIR SINE MIR 0 262 66 274 258 0 16 chr6 7122502 7122564 -182156990 - L2 LINE L2 -109 3163 3103 1405 148 94 32 chr6 7122645 7122922 -182156632 - AluJb SINE Alu -16 296 3 2186 133 68 0 chr6 7122995 7123378 -182156176 - L1MA9 LINE L1 0 6312 5904 1366 169 110 19 chr6 7123378 7123663 -182155891 + L1 LINE L1 4655 4971 -1175 2288 164 25 70 chr6 7123663 7124146 -182155408 + LOR1b LTR ERV1 1 461 0 1366 169 110 19 chr6 7124146 7124168 -182155386 + L1 LINE L1 4971 4990 -1156 180 0 0 0 chr6 7124331 7124351 -182155203 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 3890 198 259 25 chr6 7124971 7126111 -182153443 + pTR5 LTR ERV1 1033 2438 0 502 277 36 42 chr6 7126114 7126280 -182153274 + MER5A DNA MER1_type 23 187 -2 1561 161 34 38 chr6 7126875 7127000 -182152554 + AluSx SINE Alu 1 125 -187 2103 105 10 10 chr6 7127000 7127306 -182152248 + AluSp SINE Alu 1 306 -7 1561 161 34 38 chr6 7127306 7127472 -182152082 + AluSx SINE Alu 125 291 -21 389 236 264 21 chr6 7127480 7127624 -182151930 + MER5A DNA MER1_type 11 189 0 267 265 174 10 chr6 7127750 7127848 -182151706 + MER5B DNA MER1_type 1 114 -64 1790 116 0 0 chr6 7127856 7128106 -182151448 - AluSx SINE Alu -14 298 49 3739 153 52 31 chr6 7128106 7128875 -182150679 - LTR1 LTR ERV1 0 785 1 382 137 0 7 chr6 7128875 7128944 -182150610 - Alu SINE Alu -249 52 1 241 243 142 95 chr6 7129987 7130056 -182149498 - L2 LINE L2 -2 3270 3206 2128 114 3 0 chr6 7130056 7130354 -182149200 + AluSg SINE Alu 1 299 -11 241 243 142 95 chr6 7130354 7130432 -182149122 - L2 LINE L2 -66 3206 3116 316 341 89 42 chr6 7130676 7130890 -182148664 - L1ME LINE L1 -516 5605 5382 209 314 43 0 chr6 7131586 7131656 -182147898 + MIR SINE MIR 58 130 -78 565 286 177 16 chr6 7131659 7131907 -182147647 - LTR16A LTR ERVL 0 450 163 369 289 70 16 chr6 7131972 7132100 -182147454 + MIR SINE MIR 128 262 0 241 250 0 33 chr6 7132148 7132208 -182147346 - L2 LINE L2 -1 3312 3255 236 290 121 0 chr6 7132301 7132425 -182147129 - L2 LINE L2 -351 2962 2824 1449 214 46 89 chr6 7132455 7133108 -182146446 + L1MC5 LINE L1 7300 7924 -37 1142 210 25 18 chr6 7133404 7133685 -182145869 + L1ME3 LINE L1 5648 5930 -232 476 243 128 7 chr6 7133708 7133856 -182145698 + L1ME3 LINE L1 5989 6154 -8 25 31 0 0 chr6 7133866 7133898 -182145656 + AT_rich Low_complexity Low_complexity 1 32 0 1500 151 55 27 chr6 7133963 7134255 -182145299 - AluJb SINE Alu -8 304 5 253 307 0 0 chr6 7134282 7134357 -182145197 + MER94 DNA DNA 3 77 -57 883 148 0 0 chr6 7134357 7134485 -182145069 + FLAM_C SINE Alu 1 128 -5 379 320 11 55 chr6 7134595 7134776 -182144778 - MER5B DNA MER1_type 0 178 6 477 213 46 19 chr6 7135080 7135188 -182144366 - MER81 DNA DNA -1 113 3 2045 102 58 0 chr6 7135867 7136161 -182143393 + AluSp SINE Alu 1 311 -2 2143 115 0 6 chr6 7136309 7136623 -182142931 + AluSx SINE Alu 1 312 0 279 356 83 8 chr6 7136917 7137049 -182142505 + MIR3 SINE MIR 60 201 -7 542 259 80 4 chr6 7137128 7137375 -182142179 + L1MB3 LINE L1 5263 5523 -639 1996 101 20 33 chr6 7138224 7138530 -182141024 + AluSx SINE Alu 1 302 -10 253 312 32 32 chr6 7138957 7139050 -182140504 - MIR SINE MIR -112 150 58 516 334 34 61 chr6 7139571 7139897 -182139657 + L2 LINE L2 2914 3230 -42 1823 142 3 16 chr6 7140325 7140634 -182138920 - AluJo SINE Alu -7 305 1 1100 146 16 5 chr6 7140866 7141051 -182138503 + MER5A DNA MER1_type 3 189 0 528 286 10 46 chr6 7141063 7141259 -182138295 + L2 LINE L2 3124 3312 -1 1979 109 0 7 chr6 7141958 7142243 -182137311 + AluSx SINE Alu 7 289 -23 514 191 191 0 chr6 7144842 7144952 -182134602 + FLAM_C SINE Alu 2 132 -11 23 0 0 0 chr6 7144954 7144977 -182134577 + AT_rich Low_complexity Low_complexity 1 23 0 287 256 80 16 chr6 7145092 7145217 -182134337 + L2 LINE L2 2148 2280 -1034 1517 173 35 7 chr6 7145586 7145869 -182133685 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr6 7145875 7145895 -182133659 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2180 100 0 0 chr6 7146485 7146785 -182132769 + AluSx SINE Alu 1 300 -12 1686 161 29 0 chr6 7147587 7147861 -182131693 + AluJb SINE Alu 1 282 -30 1890 132 0 11 chr6 7148062 7148349 -182131205 + AluSx SINE Alu 11 294 -18 1634 136 3 103 chr6 7148704 7149035 -182130519 + AluJb SINE Alu 5 302 -10 3437 183 27 0 chr6 7149230 7149860 -182129694 + L1MB3 LINE L1 5537 6183 0 792 107 0 0 chr6 7150731 7150834 -182128720 + AluJb SINE Alu 3 105 -207 1707 202 44 41 chr6 7151057 7151444 -182128110 - MLT1B LTR MaLR -2 388 1 417 315 43 16 chr6 7151478 7151662 -182127892 - MIR SINE MIR -46 216 28 2034 126 0 16 chr6 7152085 7152402 -182127152 - AluJb SINE Alu 0 312 1 272 250 0 0 chr6 7152428 7152504 -182127050 + A-rich Low_complexity Low_complexity 1 76 0 436 252 10 19 chr6 7153187 7153290 -182126264 + MER81 DNA DNA 11 112 -2 864 246 61 36 chr6 7154323 7154600 -182124954 + L1ME2 LINE L1 5758 6041 -123 840 211 0 0 chr6 7154602 7154763 -182124791 + FRAM SINE Alu 1 160 -16 354 216 82 21 chr6 7154763 7154860 -182124694 + L1ME2 LINE L1 6034 6136 -28 1721 167 0 26 chr6 7154873 7155178 -182124376 - AluSx SINE Alu -15 297 1 1638 164 3 7 chr6 7155225 7155511 -182124043 + AluJb SINE Alu 3 287 -25 209 58 77 0 chr6 7155511 7155563 -182123991 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 361 19 0 chr6 7155597 7155705 -182123849 + L1MC4 LINE L1 6617 6726 -1316 212 271 0 0 chr6 7155828 7155876 -182123678 - L2 LINE L2 -35 3278 3231 347 338 136 49 chr6 7156206 7156700 -182122854 - L2 LINE L2 -534 2780 2244 199 296 0 19 chr6 7156826 7156880 -182122674 + MIR3 SINE MIR 13 65 -143 833 126 8 0 chr6 7157260 7157379 -182122175 + AluJb SINE Alu 5 124 -188 364 215 161 11 chr6 7157384 7157477 -182122077 - MER45 DNA AcHobo -933 107 1 560 322 70 13 chr6 7157505 7157735 -182121819 + MIR SINE MIR 12 254 -8 335 328 107 0 chr6 7158896 7159027 -182120527 + LTR67 LTR ERVL 40 184 -373 2018 114 17 0 chr6 7159690 7159989 -182119565 + AluSg SINE Alu 1 304 -6 1224 206 24 14 chr6 7160018 7160309 -182119245 - AluJo SINE Alu -17 295 2 207 0 0 0 chr6 7160373 7160396 -182119158 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1903 88 84 0 chr6 7160398 7160671 -182118883 - AluSg SINE Alu -14 296 1 366 267 64 97 chr6 7160681 7161026 -182118528 + L1M4 LINE L1 3073 3402 -2744 1624 167 10 23 chr6 7161050 7161330 -182118224 + AluJb SINE Alu 1 278 -34 183 42 0 0 chr6 7161330 7161354 -182118200 + (CA)n Simple_repeat Simple_repeat 1 24 0 1624 167 10 23 chr6 7161354 7161378 -182118176 + AluJb SINE Alu 278 301 -11 2165 104 0 0 chr6 7161388 7161725 -182117829 + AluSx SINE Alu 1 337 0 1746 150 14 10 chr6 7161962 7162255 -182117299 - AluSx SINE Alu -18 294 1 338 362 107 31 chr6 7162267 7162463 -182117091 + L1MC4 LINE L1 6493 6703 -1339 283 190 0 35 chr6 7162465 7162523 -182117031 + L1MC5 LINE L1 6790 6845 -1116 1655 165 3 10 chr6 7162523 7162658 -182116896 + AluJo SINE Alu 1 135 -177 1596 136 0 4 chr6 7162658 7162908 -182116646 + AluSx SINE Alu 50 298 -14 1655 165 3 10 chr6 7162908 7163063 -182116491 + AluJo SINE Alu 135 289 -23 27 29 0 0 chr6 7163063 7163097 -182116457 + AT_rich Low_complexity Low_complexity 1 34 0 2057 118 3 3 chr6 7163104 7163408 -182116146 + AluSc SINE Alu 1 304 -5 312 194 0 133 chr6 7163409 7163507 -182116047 + L1MC4 LINE L1 6837 7002 -1040 2158 113 0 10 chr6 7163509 7163820 -182115734 + AluSx SINE Alu 1 308 -4 514 202 54 64 chr6 7163903 7164106 -182115448 + L1MC5 LINE L1 6959 7159 -802 1622 173 11 14 chr6 7164107 7164419 -182115135 + AluJo SINE Alu 1 311 0 521 158 0 98 chr6 7164431 7164564 -182114990 + L1MC5 LINE L1 7145 7264 -697 424 221 44 18 chr6 7164561 7164674 -182114880 - L1MC4a LINE L1 -422 7386 7271 * 2056 107 0 10 chr6 7164721 7165031 -182114523 + AluSc SINE Alu 1 307 -2 432 296 124 5 chr6 7165158 7165344 -182114210 + LTR67 LTR ERVL 350 557 0 327 25 0 0 chr6 7165364 7165404 -182114150 + (TG)n Simple_repeat Simple_repeat 1 40 0 1549 171 11 11 chr6 7165678 7165965 -182113589 + AluJo SINE Alu 1 287 -25 207 0 0 0 chr6 7166104 7166127 -182113427 + (TTA)n Simple_repeat Simple_repeat 2 24 0 821 120 8 0 chr6 7166141 7166258 -182113296 - FLAM_C SINE Alu -15 118 1 765 289 125 14 chr6 7166413 7166780 -182112774 + MLT1I LTR MaLR 1 408 -1 346 322 29 47 chr6 7166782 7166953 -182112601 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7167162 7167238 -182112316 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7167255 7167307 -182112247 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7167321 7167618 -182111936 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7167620 7167686 -182111868 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7167842 7167992 -182111562 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7167992 7168371 -182111183 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7168371 7168390 -182111164 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7169022 7169143 -182110411 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7169152 7169462 -182110092 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7169462 7169595 -182109959 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7169595 7169636 -182109918 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7169666 7169726 -182109828 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7170516 7170700 -182108854 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7170701 7171003 -182108551 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7171007 7171194 -182108360 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7171199 7171276 -182108278 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7171893 7172173 -182107381 + AluSp SINE Alu 1 280 -33 393 75 0 0 chr6 7172179 7172232 -182107322 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1054 211 30 35 chr6 7172662 7172768 -182106786 - MLT1C LTR MaLR -16 451 346 592 229 91 108 chr6 7172768 7173174 -182106380 - MER93a LTR ERV1 -3 399 1 1054 211 30 35 chr6 7173174 7173299 -182106255 - MLT1C LTR MaLR -121 346 221 1017 112 0 0 chr6 7173312 7173455 -182106099 - FLAM_C SINE Alu 0 143 1 1693 154 6 26 chr6 7173457 7173769 -182105785 - AluJb SINE Alu -6 306 1 1326 133 43 0 chr6 7173769 7173980 -182105574 - MLT1C LTR MaLR -233 234 15 247 392 8 0 chr6 7174240 7174365 -182105189 + MIR3 SINE MIR 30 155 -53 183 148 0 0 chr6 7175538 7175565 -182103989 - MIR SINE MIR -99 109 83 221 284 153 9 chr6 7175629 7175775 -182103779 + MIR SINE MIR 5 140 -68 739 187 0 8 chr6 7176612 7176746 -182102808 + FLAM_C SINE Alu 1 133 0 318 284 14 85 chr6 7176921 7177010 -182102544 + L1MB3 LINE L1 5562 5639 -482 848 219 0 0 chr6 7177010 7177179 -182102375 - L1PA16 LINE L1 -17 6149 5981 318 284 14 85 chr6 7177179 7177230 -182102324 + L1MB3 LINE L1 5639 5692 -429 293 240 10 39 chr6 7177266 7177370 -182102184 + L1ME4a LINE L1 5990 6090 -31 2457 162 18 16 chr6 7177370 7177820 -182101734 + L1MB3 LINE L1 5733 6183 0 1949 116 24 10 chr6 7177895 7178187 -182101367 + AluSx SINE Alu 1 296 -16 1574 150 14 31 chr6 7178651 7178937 -182100617 + AluJo SINE Alu 1 281 -31 1584 174 9 43 chr6 7178938 7179260 -182100294 + AluJo SINE Alu 1 311 -1 2164 119 0 0 chr6 7179288 7179599 -182099955 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7179599 7179835 -182099719 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7179927 7180027 -182099527 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7181188 7181444 -182098110 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7181464 7181778 -182097776 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7181793 7181862 -182097692 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7181872 7181973 -182097581 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7182177 7182206 -182097348 + AT_rich Low_complexity Low_complexity 1 29 0 2058 120 7 3 chr6 7182577 7182876 -182096678 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7183459 7183803 -182095751 + AluJo SINE Alu 1 302 0 186 43 0 0 chr6 7183821 7183844 -182095710 + (TG)n Simple_repeat Simple_repeat 2 24 0 338 253 48 0 chr6 7183944 7184027 -182095527 - L1MC4 LINE L1 -1342 6700 6614 317 348 0 0 chr6 7183949 7184038 -182095516 + L1MC4 LINE L1 6614 6702 -1340 * 1663 155 7 4 chr6 7185182 7185460 -182094094 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7185460 7185484 -182094070 + AT_rich Low_complexity Low_complexity 1 24 0 3144 65 5 0 chr6 7185769 7186170 -182093384 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7186436 7186458 -182093096 + AT_rich Low_complexity Low_complexity 1 22 0 2016 114 7 0 chr6 7186696 7186995 -182092559 + AluY SINE Alu 1 301 -10 2270 63 0 26 chr6 7187599 7187901 -182091653 + AluY SINE Alu 1 294 -17 197 302 143 0 chr6 7188335 7188398 -182091156 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7188464 7188574 -182090980 + AT_rich Low_complexity Low_complexity 1 110 0 1607 159 4 7 chr6 7188595 7188871 -182090683 - AluJo SINE Alu -17 295 21 2254 107 3 0 chr6 7188929 7189239 -182090315 - AluSx SINE Alu -1 311 1 608 202 0 0 chr6 7189606 7189705 -182089849 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7190024 7190240 -182089314 + MIR SINE MIR 46 261 -1 1964 118 37 0 chr6 7190245 7190542 -182089012 - AluSx SINE Alu -4 308 1 610 330 172 12 chr6 7190583 7191171 -182088383 + L2 LINE L2 1965 2646 -668 847 122 0 0 chr6 7191598 7191713 -182087841 + AluSq/x SINE Alu 10 124 -188 3749 156 30 66 chr6 7191714 7192221 -182087333 + L1MB8 LINE L1 5308 5832 -346 1903 99 102 0 chr6 7192221 7192504 -182087050 + AluSx SINE Alu 1 312 0 3749 156 30 66 chr6 7192504 7192596 -182086958 + L1MB8 LINE L1 5832 5926 -252 1792 150 20 3 chr6 7192596 7192890 -182086664 - AluJb SINE Alu -13 299 1 3749 156 30 66 chr6 7192890 7193096 -182086458 + L1MB8 LINE L1 5926 6085 -93 531 118 0 0 chr6 7193308 7193393 -182086161 + (TA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr6 7193450 7193472 -182086082 + AT_rich Low_complexity Low_complexity 1 22 0 1430 166 88 3 chr6 7193490 7193774 -182085780 + AluJb SINE Alu 1 308 -4 503 318 72 40 chr6 7193778 7194124 -182085430 + L1MC/D LINE L1 3286 3642 -2504 185 150 0 25 chr6 7194163 7194203 -182085351 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 776 145 8 23 chr6 7194257 7194388 -182085166 - AluSp/q SINE Alu -14 299 171 2182 103 0 0 chr6 7194388 7194689 -182084865 + AluSq SINE Alu 5 305 -8 461 261 71 69 chr6 7194696 7194724 -182084830 + L1MC/D LINE L1 5352 5378 -743 342 67 0 0 chr6 7194724 7194769 -182084785 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 461 261 71 69 chr6 7194769 7195061 -182084493 + L1MC/D LINE L1 5378 5672 -449 712 235 34 0 chr6 7195078 7195227 -182084327 - MLT1E1 LTR MaLR -7 647 494 846 143 0 0 chr6 7195259 7195385 -182084169 - FLAM_C SINE Alu -3 130 5 353 141 3 7 chr6 7195385 7195400 -182084154 - Alu SINE Alu -3 298 284 2172 105 0 10 chr6 7195400 7195706 -182083848 - AluSx SINE Alu -9 303 1 353 141 3 7 chr6 7195706 7195763 -182083791 - Alu SINE Alu -17 284 243 622 248 90 85 chr6 7195763 7196199 -182083355 - MLT1E LTR MaLR -136 518 11 1433 158 0 0 chr6 7196199 7196420 -182083134 + AluJo SINE Alu 1 221 -91 341 93 0 0 chr6 7196585 7196628 -182082926 + Alu SINE Alu 235 277 -25 2164 110 3 0 chr6 7196632 7196940 -182082614 - AluSx SINE Alu -3 309 1 273 254 61 43 chr6 7197026 7197211 -182082343 + L1MC/D LINE L1 5723 5829 -530 671 188 8 16 chr6 7197581 7197822 -182081732 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7197956 7198107 -182081447 + L2 LINE L2 3147 3301 -12 346 308 62 15 chr6 7198157 7198287 -182081267 + L2 LINE L2 2910 3045 -227 2132 107 3 0 chr6 7198308 7198599 -182080955 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7198737 7201974 -182077580 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7201974 7203364 -182076190 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7203542 7203696 -182075858 + L2 LINE L2 3102 3272 0 917 179 6 0 chr6 7204346 7204514 -182075040 + AluJ SINE Alu 134 302 -10 2126 109 0 26 chr6 7204540 7204852 -182074702 + AluSq SINE Alu 1 304 -9 1670 172 34 0 chr6 7205622 7205918 -182073636 + AluJb SINE Alu 1 306 -6 207 69 0 0 chr6 7206494 7206523 -182073031 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr6 7206638 7206660 -182072894 + (CA)n Simple_repeat Simple_repeat 2 23 0 1813 162 0 7 chr6 7206791 7207088 -182072466 + AluJo SINE Alu 1 295 -17 2100 88 0 11 chr6 7207127 7207411 -182072143 - AluSx SINE Alu -17 295 15 227 206 0 48 chr6 7207534 7207597 -182071957 + AluJo SINE Alu 75 134 -168 587 209 124 0 chr6 7207664 7207793 -182071761 - MIR SINE MIR 0 262 118 759 122 0 0 chr6 7207810 7207917 -182071637 + FRAM SINE Alu 65 171 -5 333 304 0 0 chr6 7207918 7207997 -182071557 - MIR SINE MIR -182 80 2 1424 173 24 34 chr6 7208800 7209095 -182070459 - AluJb SINE Alu -9 303 12 195 179 0 26 chr6 7209208 7209247 -182070307 + L2 LINE L2 3276 3313 0 540 304 207 52 chr6 7209275 7209312 -182070242 - L2 LINE L2 -3 3269 3239 2280 157 171 28 chr6 7209312 7209808 -182069746 + MLT1F1 LTR MaLR 1 567 0 540 304 207 52 chr6 7209808 7210966 -182068588 - L2 LINE L2 -33 3239 1873 2229 94 0 0 chr6 7210990 7211287 -182068267 - AluY SINE Alu -14 297 1 2308 104 0 0 chr6 7211325 7211634 -182067920 - AluSg SINE Alu -1 309 1 431 269 134 7 chr6 7212042 7212191 -182067363 + MIR SINE MIR 75 242 -20 187 211 18 88 chr6 7212161 7212218 -182067336 + L2 LINE L2 3217 3269 -3 * 201 39 0 0 chr6 7212295 7212321 -182067233 + (TG)n Simple_repeat Simple_repeat 2 27 0 271 212 200 0 chr6 7212324 7212409 -182067145 - U13 snRNA snRNA 0 104 3 1971 84 22 0 chr6 7212531 7212831 -182066723 - AluSc SINE Alu 0 306 1 198 0 0 0 chr6 7212831 7212853 -182066701 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1693 149 0 24 chr6 7212853 7213142 -182066412 - AluJo SINE Alu -30 282 1 195 218 55 18 chr6 7213175 7213230 -182066324 + L2 LINE L2 3216 3272 0 215 272 88 40 chr6 7214267 7214392 -182065162 - MIR SINE MIR -61 147 17 231 61 0 0 chr6 7215392 7215425 -182064129 + (CA)n Simple_repeat Simple_repeat 2 34 0 2130 98 23 10 chr6 7215480 7215786 -182063768 + AluSx SINE Alu 2 311 -1 871 104 0 0 chr6 7216153 7216268 -182063286 + FLAM_C SINE Alu 4 118 -15 2292 93 3 7 chr6 7216557 7216858 -182062696 + AluSx SINE Alu 1 300 -12 553 232 66 13 chr6 7217508 7217659 -182061895 + MIR SINE MIR 28 186 -76 207 0 0 0 chr6 7217884 7217907 -182061647 + (A)n Simple_repeat Simple_repeat 1 23 0 219 69 0 0 chr6 7218299 7218328 -182061226 + (GA)n Simple_repeat Simple_repeat 2 30 0 1176 129 0 12 chr6 7218436 7218606 -182060948 + AluSg/x SINE Alu 121 288 -24 723 189 115 80 chr6 7219537 7219849 -182059705 - L1MC5 LINE L1 -30 7931 7609 382 335 37 12 chr6 7220122 7220283 -182059271 + MIR3 SINE MIR 21 185 -23 279 399 43 6 chr6 7220458 7220621 -182058933 + L2 LINE L2 3104 3272 0 189 254 14 84 chr6 7220637 7220708 -182058846 + MIR SINE MIR 141 206 -56 1718 179 10 23 chr6 7220834 7221142 -182058412 - AluJo SINE Alu -8 304 1 2347 94 0 3 chr6 7221193 7221492 -182058062 - AluSp SINE Alu -15 298 1 349 200 19 150 chr6 7222007 7222167 -182057387 - MER103 DNA DNA -11 155 17 358 133 51 43 chr6 7222169 7222295 -182057259 - HsTC2 DNA Tc2 -44 1854 9 21 0 0 0 chr6 7223573 7223594 -182055960 + GC_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr6 7223718 7223773 -182055781 + GC_rich Low_complexity Low_complexity 1 55 0 189 107 0 0 chr6 7224315 7224343 -182055211 + (CGGGGG)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr6 7224456 7224482 -182055072 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2336 96 0 0 chr6 7225819 7226122 -182053432 + AluY SINE Alu 1 303 -8 736 161 0 58 chr6 7226173 7226310 -182053244 - FLAM_C SINE Alu -13 130 2 332 137 0 0 chr6 7227116 7227167 -182052387 - FAM SINE Alu -10 165 115 2440 94 3 0 chr6 7227167 7227475 -182052079 - AluSp SINE Alu -4 309 1 2155 123 0 7 chr6 7227517 7227825 -182051729 + AluSx SINE Alu 1 306 -6 2487 61 0 0 chr6 7227874 7228170 -182051384 + AluY SINE Alu 1 296 -15 200 216 0 0 chr6 7228456 7228493 -182051061 + GA-rich Low_complexity Low_complexity 2 38 0 629 174 41 8 chr6 7229361 7229482 -182050072 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7229482 7229561 -182049993 + AT_rich Low_complexity Low_complexity 1 79 0 195 345 17 17 chr6 7229687 7229746 -182049808 + MER5A DNA MER1_type 68 126 -63 2352 92 0 7 chr6 7229746 7230049 -182049505 - AluSc SINE Alu -8 301 1 195 345 17 17 chr6 7230049 7230108 -182049446 + MER5A DNA MER1_type 125 186 -3 594 144 0 0 chr6 7231167 7231279 -182048275 + AluSg/x SINE Alu 195 306 0 504 103 4 0 chr6 7231279 7231356 -182048198 - L1MB2 LINE L1 -32 6136 6058 2176 114 0 0 chr6 7231624 7231914 -182047640 + AluSg SINE Alu 1 290 -20 234 208 0 0 chr6 7231914 7231962 -182047592 + AluJ/monomer SINE Alu 1 48 -251 2192 129 0 0 chr6 7232006 7232308 -182047246 - AluSx SINE Alu -10 302 1 2058 118 0 14 chr6 7233161 7233488 -182046066 - AluSx SINE Alu 0 323 1 759 155 0 0 chr6 7233858 7233974 -182045580 + FLAM_C SINE Alu 1 116 -17 356 171 0 85 chr6 7235077 7235159 -182044395 + Charlie7 DNA MER1_type 37 111 -2501 786 166 59 130 chr6 7235162 7235236 -182044318 - L1MB4 LINE L1 -2 6178 6100 2396 80 0 3 chr6 7235236 7235525 -182044029 - AluSq SINE Alu -25 288 1 786 166 59 130 chr6 7235525 7235703 -182043851 - L1MB4 LINE L1 -80 6100 5944 752 183 0 0 chr6 7235716 7235831 -182043723 - AluSq/x SINE Alu -197 116 2 1436 135 35 45 chr6 7235832 7236120 -182043434 - L1MB4 LINE L1 -564 5610 5326 1976 150 3 0 chr6 7236124 7236460 -182043094 + AluSx SINE Alu 1 337 0 250 222 30 12 chr6 7236829 7236904 -182042650 + AluS SINE Alu 1 61 -238 1289 102 19 10 chr6 7237005 7237210 -182042344 + AluY SINE Alu 82 288 -23 2544 55 0 0 chr6 7237328 7237638 -182041916 - AluY SINE Alu -1 310 1 2540 71 0 7 chr6 7237711 7238020 -182041534 - AluSg SINE Alu -3 307 1 2422 71 0 16 chr6 7238205 7238516 -182041038 + AluY SINE Alu 1 306 -5 2373 92 0 3 chr6 7238673 7238978 -182040576 + AluSq SINE Alu 1 304 -9 26 69 0 14 chr6 7239018 7239035 -182040519 + AT_rich Low_complexity Low_complexity 1 17 -54 2241 104 0 0 chr6 7239035 7239322 -182040232 - AluSg SINE Alu -23 287 1 26 69 0 14 chr6 7239322 7239376 -182040178 + AT_rich Low_complexity Low_complexity 17 71 0 1761 129 10 34 chr6 7239456 7239750 -182039804 - AluJo SINE Alu -3 309 23 1784 129 86 4 chr6 7239769 7240047 -182039507 - AluSq SINE Alu -12 301 1 893 158 0 0 chr6 7240585 7240718 -182038836 + FLAM_C SINE Alu 1 133 0 2116 160 0 0 chr6 7241014 7241321 -182038233 - AluJb SINE Alu -5 307 1 2072 120 6 19 chr6 7241341 7241657 -182037897 - AluSq SINE Alu 0 313 2 930 294 59 15 chr6 7241667 7242075 -182037479 - L1ME3A LINE L1 -220 5950 5525 2324 109 0 0 chr6 7242081 7242385 -182037169 - AluSx SINE Alu -8 304 1 558 156 45 78 chr6 7242413 7242477 -182037077 - L1MA9 LINE L1 0 6312 6247 2155 134 0 0 chr6 7242477 7242782 -182036772 + AluJb SINE Alu 1 305 -7 558 156 45 78 chr6 7242782 7242871 -182036683 - L1MA9 LINE L1 -65 6247 6164 1605 198 7 20 chr6 7242889 7243187 -182036367 + AluJo SINE Alu 1 294 -18 653 242 85 42 chr6 7243191 7243451 -182036103 - L1ME3A LINE L1 -633 5531 5261 259 159 14 43 chr6 7243513 7243582 -182035972 - L1ME3A LINE L1 -896 5250 5184 2442 85 3 0 chr6 7243633 7243939 -182035615 - AluSx SINE Alu -5 307 1 708 285 79 65 chr6 7243939 7244571 -182034983 - L1ME3A LINE L1 -976 5170 4530 576 210 46 149 chr6 7244581 7244843 -182034711 + MIR SINE MIR 2 236 -26 2143 116 6 61 chr6 7244943 7245289 -182034265 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7245394 7245426 -182034128 + AT_rich Low_complexity Low_complexity 1 32 0 2034 120 0 3 chr6 7245571 7245884 -182033670 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7246263 7246332 -182033222 + FLAM_A SINE Alu 66 133 0 261 83 0 0 chr6 7246816 7246852 -182032702 + (T)n Simple_repeat Simple_repeat 1 36 0 2311 88 3 3 chr6 7247087 7247381 -182032173 - AluSc SINE Alu -15 294 1 1061 103 0 0 chr6 7247381 7247517 -182032037 - AluSq/x SINE Alu -177 136 1 735 162 0 0 chr6 7247559 7247676 -182031878 + FLAM_A SINE Alu 1 117 -16 334 0 0 42 chr6 7247684 7247732 -182031822 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 416 224 269 6 chr6 7247733 7247889 -182031665 - MIR SINE MIR -4 258 62 322 283 38 38 chr6 7248230 7248389 -182031165 - MIR SINE MIR -25 237 79 2333 93 0 0 chr6 7248886 7249177 -182030377 - AluY SINE Alu -20 291 1 302 296 152 8 chr6 7249216 7249348 -182030206 - MIR3 SINE MIR -28 180 30 736 121 129 0 chr6 7250017 7250133 -182029421 + FLAM_A SINE Alu 1 131 -2 543 136 0 0 chr6 7250190 7250278 -182029276 - MER2 DNA MER2_type -135 210 123 904 141 0 15 chr6 7250279 7250414 -182029140 + FLAM_C SINE Alu 1 133 0 726 212 8 0 chr6 7250460 7250592 -182028962 - MER2 DNA MER2_type -210 135 3 326 222 25 0 chr6 7250692 7250773 -182028781 - L1ME3A LINE L1 -9 6161 6079 401 202 103 21 chr6 7250796 7250939 -182028615 + MIR SINE MIR 45 201 -59 2590 58 0 7 chr6 7251007 7251316 -182028238 + AluY SINE Alu 2 308 -3 770 148 0 16 chr6 7251526 7251648 -182027906 + FLAM_C SINE Alu 3 122 -11 493 189 13 26 chr6 7251669 7251822 -182027732 + GA-rich Low_complexity Low_complexity 3 153 0 2281 115 0 0 chr6 7251858 7252163 -182027391 + AluSx SINE Alu 1 305 -7 1968 122 29 0 chr6 7252456 7252735 -182026819 - AluSx SINE Alu -25 287 1 1344 101 0 0 chr6 7252740 7252938 -182026616 - L1MA5 LINE L1 -2 6298 6101 314 187 67 13 chr6 7252949 7253024 -182026530 - L1MA5A LINE L1 -172 6125 6047 2345 88 13 0 chr6 7253493 7253801 -182025753 + AluSx SINE Alu 1 312 0 1266 177 72 16 chr6 7254005 7254254 -182025300 + AluJo SINE Alu 33 295 -17 2391 97 3 0 chr6 7254328 7254639 -182024915 + AluSx SINE Alu 1 312 0 436 108 14 14 chr6 7254639 7254713 -182024841 + Charlie1 DNA MER1_type 2688 2761 0 207 352 46 19 chr6 7254873 7254981 -182024573 - L2 LINE L2 -18 3295 3185 410 324 77 6 chr6 7255077 7255247 -182024307 - MIR SINE MIR -26 236 55 2207 111 10 3 chr6 7256030 7256336 -182023218 - AluSx SINE Alu -4 308 1 2335 86 0 0 chr6 7256636 7256928 -182022626 + AluY SINE Alu 1 292 -19 2310 98 0 0 chr6 7256941 7257236 -182022318 + AluSx SINE Alu 3 297 -15 266 211 178 0 chr6 7257875 7257965 -182021589 + MIR SINE MIR 87 192 -70 2396 73 10 0 chr6 7258110 7258410 -182021144 + AluSp SINE Alu 1 303 -10 288 249 24 133 chr6 7258874 7259039 -182020515 + MIR3 SINE MIR 33 179 -29 4376 139 16 22 chr6 7260718 7261486 -182018068 - L1MB3 LINE L1 -7 6176 5414 351 238 0 12 chr6 7261950 7262030 -182017524 + MIR SINE MIR 20 98 -164 310 334 30 30 chr6 7262114 7262413 -182017141 - L1M4 LINE L1 -1898 4248 3950 1295 117 20 101 chr6 7262905 7263069 -182016485 + MER30 DNA MER1_type 3 143 -87 2280 74 7 3 chr6 7263069 7263387 -182016167 - AluSx SINE Alu 0 319 1 1295 117 20 101 chr6 7263387 7263469 -182016085 + MER30 DNA MER1_type 143 230 0 21 0 0 0 chr6 7263517 7263538 -182016016 + AT_rich Low_complexity Low_complexity 1 21 0 942 132 0 21 chr6 7263567 7263711 -182015843 + AluJo SINE Alu 1 141 -171 2255 104 3 19 chr6 7263711 7264027 -182015527 + AluSx SINE Alu 1 311 -1 300 223 84 62 chr6 7264033 7264250 -182015304 - L1ME4a LINE L1 -218 5903 5681 191 88 29 0 chr6 7264324 7264358 -182015196 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1891 80 13 0 chr6 7264368 7264607 -182014947 - AluSp SINE Alu -58 255 14 2502 65 0 0 chr6 7264622 7264932 -182014622 - AluY SINE Alu -1 310 1 336 153 0 19 chr6 7264946 7265011 -182014543 + Alu SINE Alu 1 47 -255 273 236 149 63 chr6 7265014 7265188 -182014366 - L1ME4a LINE L1 -656 5465 5277 524 285 69 69 chr6 7265189 7265338 -182014216 + MIR SINE MIR 3 151 -111 2216 107 0 0 chr6 7265338 7265636 -182013918 + AluSx SINE Alu 1 298 -14 1908 109 39 3 chr6 7265639 7265923 -182013631 + AluSc SINE Alu 1 294 -15 524 285 69 69 chr6 7265923 7266015 -182013539 + MIR SINE MIR 152 248 -14 415 287 137 92 chr6 7266054 7266235 -182013319 - L1ME4a LINE L1 -912 5234 5063 2334 83 0 10 chr6 7266235 7266548 -182013006 - AluSq SINE Alu -3 310 1 415 287 137 92 chr6 7266548 7266611 -182012943 - L1ME4a LINE L1 -1083 5063 5004 1691 167 3 7 chr6 7266611 7266774 -182012780 - AluJb SINE Alu -20 292 130 348 24 0 0 chr6 7266774 7266815 -182012739 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1681 135 0 19 chr6 7266815 7267075 -182012479 - AluSx SINE Alu -31 281 27 1691 167 3 7 chr6 7267075 7267203 -182012351 - AluJb SINE Alu -180 132 1 2215 103 7 3 chr6 7267212 7267522 -182012032 - AluSq SINE Alu -2 311 1 415 287 137 92 chr6 7267522 7267691 -182011863 - L1ME4a LINE L1 -1149 4997 4791 379 323 65 8 chr6 7267875 7267999 -182011555 + MIR3 SINE MIR 14 144 -64 2012 115 0 35 chr6 7268112 7268425 -182011129 + AluSx SINE Alu 1 302 -10 1432 141 33 21 chr6 7268524 7268766 -182010788 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7268773 7268794 -182010760 + AT_rich Low_complexity Low_complexity 1 21 0 1743 175 0 0 chr6 7268802 7269088 -182010466 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7269112 7269160 -182010394 + (TA)n Simple_repeat Simple_repeat 2 51 0 200 252 65 9 chr6 7269161 7269268 -182010286 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 230 150 25 25 chr6 7269282 7269362 -182010192 + (TA)n Simple_repeat Simple_repeat 1 80 0 2075 107 10 3 chr6 7269387 7269686 -182009868 - AluSc SINE Alu -8 301 1 1604 150 42 71 chr6 7269764 7269908 -182009646 - MLT1B LTR MaLR -46 344 197 2004 131 0 10 chr6 7269908 7270222 -182009332 - AluY SINE Alu 0 311 1 1604 150 42 71 chr6 7270222 7270337 -182009217 - MLT1B LTR MaLR -193 197 80 1725 109 94 0 chr6 7270337 7270593 -182008961 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 7270593 7270614 -182008940 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1604 150 42 71 chr6 7270614 7270706 -182008848 - MLT1B LTR MaLR -308 82 1 742 173 8 24 chr6 7271706 7271833 -182007721 - FLAM_A SINE Alu -8 125 1 1238 151 18 14 chr6 7271864 7272082 -182007472 - MER20 DNA MER1_type 0 219 1 1407 78 0 0 chr6 7272416 7272595 -182006959 - AluSg/x SINE Alu -7 305 127 539 294 51 25 chr6 7272670 7272905 -182006649 + MIR SINE MIR 20 260 -2 1024 159 53 39 chr6 7273104 7273311 -182006243 - L1PB4 LINE L1 0 6156 5947 279 303 34 51 chr6 7274079 7274313 -182005241 + L2 LINE L2 2810 3039 -233 1943 89 78 0 chr6 7274923 7275204 -182004350 + AluSp SINE Alu 1 303 -10 1552 118 4 0 chr6 7275204 7275432 -182004122 + AluSg/x SINE Alu 80 309 -1 2159 118 3 0 chr6 7275463 7275769 -182003785 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7275805 7275827 -182003727 + AT_rich Low_complexity Low_complexity 1 22 0 40 49 0 0 chr6 7275882 7275943 -182003611 + AT_rich Low_complexity Low_complexity 1 61 0 301 235 37 99 chr6 7275943 7276105 -182003449 + L1MCa LINE L1 1941 2092 -4334 743 81 24 16 chr6 7276250 7276373 -182003181 - L1MB8 LINE L1 -9 6169 6046 899 209 0 0 chr6 7276388 7276541 -182003013 - FRAM SINE Alu -13 153 1 1248 138 4 43 chr6 7276545 7276776 -182002778 - AluSc SINE Alu -4 305 84 1868 116 56 3 chr6 7276776 7277061 -182002493 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7277116 7277205 -182002349 + GA-rich Low_complexity Low_complexity 4 93 0 3962 138 14 2 chr6 7277220 7277843 -182001711 - L1MB7 LINE L1 -129 6055 5425 1678 189 3 0 chr6 7277955 7278261 -182001293 + AluJo SINE Alu 1 307 -5 22 0 0 0 chr6 7279164 7279186 -182000368 + GC_rich Low_complexity Low_complexity 1 22 0 922 199 8 34 chr6 7280285 7280552 -181999002 - AluSq SINE Alu -27 286 27 30 45 0 0 chr6 7280801 7280845 -181998709 + GC_rich Low_complexity Low_complexity 1 44 0 204 263 0 0 chr6 7280958 7281015 -181998539 + G-rich Low_complexity Low_complexity 6 62 0 255 61 0 0 chr6 7281476 7281509 -181998045 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7281962 7282012 -181997542 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7282243 7282278 -181997276 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7282444 7282466 -181997088 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 7283639 7283673 -181995881 + (TG)n Simple_repeat Simple_repeat 2 35 0 231 244 0 0 chr6 7284316 7284361 -181995193 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7285297 7285318 -181994236 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7287041 7287072 -181992482 + MIR SINE MIR 159 189 -73 1264 138 10 0 chr6 7287310 7287506 -181992048 - AluSg/x SINE Alu -29 283 86 662 181 132 64 chr6 7287562 7287766 -181991788 + MER20 DNA MER1_type 2 219 0 289 369 114 29 chr6 7288857 7289453 -181990101 + L2 LINE L2 2258 2904 -410 2261 78 16 16 chr6 7290565 7290874 -181988680 - AluSq SINE Alu 0 313 5 675 159 0 103 chr6 7290907 7291052 -181988502 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7291136 7291168 -181988386 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7291291 7291590 -181987964 - AluSx SINE Alu -13 299 1 888 154 0 0 chr6 7291975 7292118 -181987436 - FLAM_C SINE Alu 0 143 1 1564 114 146 4 chr6 7292279 7292533 -181987021 + AluSg1 SINE Alu 4 293 -16 321 236 194 36 chr6 7292628 7292793 -181986761 - L2 LINE L2 -211 3061 2871 1721 164 0 10 chr6 7293338 7293637 -181985917 + AluJb SINE Alu 1 296 -16 1614 134 91 14 chr6 7293845 7293983 -181985571 - AluJb SINE Alu -16 296 170 2171 107 0 13 chr6 7293983 7294293 -181985261 - AluSx SINE Alu -6 306 1 1614 134 91 14 chr6 7294293 7294429 -181985125 - AluJb SINE Alu -142 170 1 217 351 69 30 chr6 7294828 7294959 -181984595 - L3 LINE CR1 -89 1488 1353 1924 150 0 7 chr6 7295429 7295735 -181983819 - AluJb SINE Alu -8 304 1 1967 117 3 17 chr6 7296332 7296631 -181982923 - AluSx SINE Alu -17 295 1 2410 60 0 3 chr6 7296780 7297080 -181982474 - AluY SINE Alu -12 299 1 600 258 39 57 chr6 7297870 7298099 -181981455 - MIR SINE MIR -1 261 37 2278 64 0 0 chr6 7299152 7299469 -181980085 - AluSg SINE Alu 0 317 1 1627 115 78 0 chr6 7299489 7299732 -181979822 - AluSq SINE Alu -45 268 7 376 224 84 28 chr6 7301637 7301744 -181977810 - MIR SINE MIR -76 186 74 2153 103 0 0 chr6 7301856 7302147 -181977407 + AluSx SINE Alu 1 291 -21 2051 134 0 0 chr6 7303786 7304084 -181975470 - AluSg SINE Alu -12 298 1 2291 54 40 0 chr6 7304099 7304395 -181975159 - AluY SINE Alu -3 308 1 371 269 67 8 chr6 7304430 7304549 -181975005 - MIR SINE MIR -32 230 105 580 227 74 23 chr6 7304607 7304783 -181974771 - MIR SINE MIR -62 200 16 525 134 12 0 chr6 7304848 7304930 -181974624 - AluJ/FLAM SINE Alu -228 84 2 1538 167 20 33 chr6 7305033 7305221 -181974333 - AluSx SINE Alu -16 296 112 2185 112 0 0 chr6 7305221 7305524 -181974030 - AluSq SINE Alu -10 303 1 1538 167 20 33 chr6 7305524 7305635 -181973919 - AluSx SINE Alu -200 112 1 496 188 0 0 chr6 7305656 7305741 -181973813 + L2 LINE L2 3229 3313 0 298 216 9 117 chr6 7306269 7306380 -181973174 - MIR3 SINE MIR -6 202 104 681 197 0 0 chr6 7306610 7306727 -181972827 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7306727 7306755 -181972799 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 243 290 42 53 chr6 7306941 7307203 -181972351 - L1ME4a LINE L1 -65 6056 5798 759 183 0 22 chr6 7309607 7309744 -181969810 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7314387 7314419 -181965135 + GC_rich Low_complexity Low_complexity 1 32 0 2209 65 0 20 chr6 7315112 7315404 -181964150 + AluSq SINE Alu 14 299 -14 237 65 0 0 chr6 7317009 7317040 -181962514 + (T)n Simple_repeat Simple_repeat 1 31 0 664 144 79 0 chr6 7317382 7317521 -181962033 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7319136 7319164 -181960390 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7319270 7319298 -181960256 + (CA)n Simple_repeat Simple_repeat 2 29 0 407 231 28 0 chr6 7321558 7321666 -181957888 + L1MD2 LINE L1 6249 6359 0 2176 106 0 0 chr6 7322100 7322392 -181957162 - AluSx SINE Alu -20 292 1 229 175 0 0 chr6 7322635 7322675 -181956879 - L3b LINE CR1 -3 1580 1541 2278 76 0 7 chr6 7322856 7323158 -181956396 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7326275 7326296 -181953258 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7326402 7326423 -181953131 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr6 7326583 7326614 -181952940 + (CA)n Simple_repeat Simple_repeat 2 32 0 509 274 37 93 chr6 7326892 7327246 -181952308 - MLT1I LTR MaLR -6 403 70 1084 138 69 0 chr6 7327382 7327556 -181951998 + MER5A DNA MER1_type 4 189 0 740 256 55 47 chr6 7327676 7327930 -181951624 - MIR SINE MIR -1 261 6 2041 122 0 13 chr6 7328469 7328780 -181950774 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7328949 7328971 -181950583 + AT_rich Low_complexity Low_complexity 1 22 0 1957 124 0 7 chr6 7330319 7330617 -181948937 + AluSx SINE Alu 1 296 -16 185 139 0 28 chr6 7330617 7330644 -181948910 - L2 LINE L2 -22 3291 3264 1483 159 52 38 chr6 7330658 7330948 -181948606 + AluJb SINE Alu 1 294 -18 229 267 0 0 chr6 7333183 7333228 -181946326 - L2 LINE L2 -27 3286 3242 400 162 0 81 chr6 7333279 7333378 -181946176 - AluJ/FRAM SINE Alu -4 308 218 378 104 5 19 chr6 7333394 7333453 -181946101 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7333474 7333516 -181946038 + AT_rich Low_complexity Low_complexity 1 42 0 1662 157 0 52 chr6 7333689 7333847 -181945707 - AluJb SINE Alu -22 290 154 2252 98 3 0 chr6 7333847 7334153 -181945401 - AluSc SINE Alu -2 307 1 1662 157 0 52 chr6 7334153 7334300 -181945254 - AluJb SINE Alu -158 154 1 229 0 54 27 chr6 7335989 7336026 -181943528 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 908 149 0 7 chr6 7336030 7336178 -181943376 - AluJb SINE Alu -24 288 142 2345 77 0 10 chr6 7336550 7336862 -181942692 - AluY SINE Alu -1 310 2 21 0 0 0 chr6 7340473 7340494 -181939060 + AT_rich Low_complexity Low_complexity 1 21 0 1992 82 85 4 chr6 7340519 7340800 -181938754 - AluSq SINE Alu -9 304 1 213 304 0 0 chr6 7341030 7341086 -181938468 - MIR SINE MIR -96 166 111 2192 94 20 0 chr6 7341148 7341446 -181938108 + AluSx SINE Alu 1 304 -8 420 304 193 46 chr6 7341565 7341979 -181937575 - L3 LINE CR1 -2 1575 1101 262 293 82 24 chr6 7341985 7342171 -181937383 + MIR SINE MIR 11 255 -7 453 209 85 52 chr6 7344037 7344190 -181935364 - MER5A DNA MER1_type -3 186 29 392 250 98 38 chr6 7344692 7344824 -181934730 + MIR SINE MIR 64 203 -59 1639 179 3 0 chr6 7345117 7345414 -181934140 - AluJo SINE Alu -14 298 1 761 177 8 0 chr6 7345586 7345716 -181933838 - FLAM_C SINE Alu -1 132 2 1550 109 97 4 chr6 7346444 7346691 -181932863 + AluSx SINE Alu 42 311 -1 1171 118 129 86 chr6 7346704 7346983 -181932571 + AluSx SINE Alu 21 311 -1 192 125 0 0 chr6 7347650 7347682 -181931872 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 1981 137 13 0 chr6 7347772 7348078 -181931476 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 7348078 7348099 -181931455 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1794 147 7 3 chr6 7349085 7349378 -181930176 - AluJb SINE Alu -10 302 9 2101 117 7 7 chr6 7350104 7350412 -181929142 + AluSx SINE Alu 1 308 -4 1561 149 16 68 chr6 7350711 7350882 -181928672 - AluJo SINE Alu -19 293 144 2039 139 7 0 chr6 7350882 7351192 -181928362 - AluSx SINE Alu 0 312 1 1561 149 16 68 chr6 7351192 7351329 -181928225 - AluJo SINE Alu -168 144 1 23 54 0 0 chr6 7351329 7351366 -181928188 + AT_rich Low_complexity Low_complexity 1 37 0 578 169 0 48 chr6 7352444 7352568 -181926986 - FLAM_A SINE Alu 0 142 25 21 36 0 0 chr6 7352966 7352994 -181926560 + AT_rich Low_complexity Low_complexity 1 28 0 762 168 0 8 chr6 7352994 7353119 -181926435 - FLAM_C SINE Alu -17 126 3 295 277 85 11 chr6 7356214 7356308 -181923246 - L1ME LINE L1 -519 5602 5502 203 286 0 0 chr6 7356363 7356412 -181923142 + CT-rich Low_complexity Low_complexity 4 52 0 246 343 20 10 chr6 7356544 7356643 -181922911 - L2 LINE L2 -7 3306 3207 671 177 23 23 chr6 7357239 7357369 -181922185 + FLAM_A SINE Alu 1 130 -3 213 65 0 0 chr6 7357432 7357463 -181922091 + (TTA)n Simple_repeat Simple_repeat 3 33 0 27 0 0 0 chr6 7357576 7357603 -181921951 + AT_rich Low_complexity Low_complexity 1 27 0 896 102 0 0 chr6 7357604 7357722 -181921832 - FLAM_C SINE Alu -19 124 7 2239 101 0 0 chr6 7358457 7358755 -181920799 + AluSx SINE Alu 1 298 -14 698 255 98 13 chr6 7358979 7359214 -181920340 + MIR SINE MIR 5 259 -3 273 224 19 118 chr6 7359482 7359643 -181919911 + MER5A DNA MER1_type 21 165 -24 575 281 49 0 chr6 7360310 7360474 -181919080 - MIR SINE MIR -8 254 83 450 0 0 0 chr6 7360710 7360760 -181918794 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 671 101 50 0 chr6 7360760 7360859 -181918695 - HY1 scRNA scRNA -8 104 1 23 33 0 0 chr6 7360936 7360966 -181918588 + AT_rich Low_complexity Low_complexity 1 30 0 1818 132 3 52 chr6 7361043 7361370 -181918184 + AluSx SINE Alu 1 311 -1 249 159 0 0 chr6 7361585 7361629 -181917925 + (TG)n Simple_repeat Simple_repeat 2 45 0 1340 102 0 11 chr6 7361629 7361816 -181917738 - AluSg/x SINE Alu -32 280 96 464 315 31 0 chr6 7363509 7363639 -181915915 + MIR SINE MIR 11 144 -118 267 274 115 0 chr6 7363684 7363797 -181915757 + MIR SINE MIR 137 262 0 231 254 17 0 chr6 7364601 7364660 -181914894 - L1MB8 LINE L1 -20 6158 6099 * 1314 180 15 15 chr6 7364646 7364913 -181914641 - L1MB8 LINE L1 -345 5833 5567 1941 212 172 7 chr6 7364916 7365482 -181914072 - L1MB8 LINE L1 -1573 4573 3897 180 0 0 0 chr6 7365482 7365502 -181914052 + (T)n Simple_repeat Simple_repeat 1 20 0 1941 212 172 7 chr6 7365502 7365548 -181914006 - L1MB8 LINE L1 -2249 3897 3860 1955 132 0 0 chr6 7365557 7365846 -181913708 - AluSx SINE Alu -18 294 6 1864 225 56 17 chr6 7365852 7366496 -181913058 - L1MB8 LINE L1 -2690 3456 2788 1204 193 8 4 chr6 7366510 7366749 -181912805 - L1MB8 LINE L1 -3317 2829 2590 275 273 322 0 chr6 7366773 7366894 -181912660 - MIR SINE MIR -91 171 12 1948 119 89 18 chr6 7366894 7366944 -181912610 - MER46B DNA MER2_type -2495 236 191 200 57 0 29 chr6 7366944 7366979 -181912575 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 119 89 18 chr6 7366979 7367265 -181912289 - MER46B DNA MER2_type -2540 191 1 21 0 0 0 chr6 7367596 7367617 -181911937 + AT_rich Low_complexity Low_complexity 1 21 0 1702 149 0 4 chr6 7367626 7367894 -181911660 + AluSx SINE Alu 1 267 -45 700 272 49 0 chr6 7368232 7368416 -181911138 + MIR SINE MIR 70 262 0 279 104 0 0 chr6 7369557 7369605 -181909949 + (T)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 7370054 7370091 -181909463 + AT_rich Low_complexity Low_complexity 1 37 0 1386 162 79 0 chr6 7370791 7371032 -181908522 + AluSx SINE Alu 31 290 -22 276 273 165 8 chr6 7372580 7372701 -181906853 + MIR SINE MIR 117 256 -6 1006 150 0 0 chr6 7373016 7373201 -181906353 - AluJb SINE Alu 0 306 122 315 152 0 0 chr6 7373538 7373584 -181905970 + L1MC4 LINE L1 6658 6703 -1339 396 59 0 0 chr6 7373589 7373640 -181905914 + (TG)n Simple_repeat Simple_repeat 2 52 0 1989 105 59 0 chr6 7373641 7373927 -181905627 - AluSq SINE Alu -10 303 1 286 343 29 25 chr6 7375899 7376138 -181903416 + L3 LINE CR1 1043 1282 -295 557 196 10 0 chr6 7376632 7376729 -181902825 + FRAM SINE Alu 63 160 -16 637 256 18 0 chr6 7378506 7378674 -181900880 - MER5A DNA MER1_type -3 186 16 260 352 22 0 chr6 7378707 7378798 -181900756 - MIR SINE MIR -112 150 58 498 291 131 51 chr6 7379859 7380474 -181899080 - L2 LINE L2 -8 3305 2621 369 355 35 43 chr6 7380534 7380790 -181898764 - L1MC/D LINE L1 -2109 5699 5446 824 320 157 36 chr6 7380795 7381439 -181898115 + L3 LINE CR1 851 1572 -5 297 259 134 21 chr6 7382246 7382401 -181897153 + MIR SINE MIR 2 181 -27 549 198 0 0 chr6 7382922 7383028 -181896526 - AluJo/FRAM SINE Alu -2 310 205 448 118 0 0 chr6 7383027 7383095 -181896459 + AluS SINE Alu 226 293 -18 * 251 233 62 144 chr6 7384552 7384663 -181894891 + L2 LINE L2 3180 3278 -35 624 81 0 0 chr6 7384663 7384750 -181894804 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 251 233 62 144 chr6 7384750 7384784 -181894770 + L2 LINE L2 3278 3313 0 211 286 165 30 chr6 7386366 7386499 -181893055 + MIR3 SINE MIR 24 174 -34 1952 133 3 16 chr6 7386509 7386825 -181892729 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 7388693 7388716 -181890838 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1536 179 4 14 chr6 7388718 7388998 -181890556 - AluJb SINE Alu -35 277 1 608 258 47 39 chr6 7388998 7389231 -181890323 - MER33 DNA MER1_type -53 271 37 192 321 49 12 chr6 7389457 7389538 -181890016 - L2 LINE L2 -4 3268 3185 215 254 32 16 chr6 7440752 7440815 -181838739 + CT-rich Low_complexity Low_complexity 5 68 0 2161 110 0 3 chr6 7445338 7445638 -181833916 + AluSx SINE Alu 1 299 -13 799 144 0 0 chr6 7445649 7445767 -181833787 + FLAM_C SINE Alu 1 118 -15 2249 84 7 0 chr6 7446472 7446769 -181832785 + AluSq SINE Alu 1 299 -14 228 277 15 15 chr6 7448837 7448902 -181830652 + MIR SINE MIR 111 175 -87 381 22 0 0 chr6 7450417 7450463 -181829091 + (GA)n Simple_repeat Simple_repeat 1 46 0 282 29 0 0 chr6 7451149 7451184 -181828370 + (TTA)n Simple_repeat Simple_repeat 1 35 0 318 153 0 0 chr6 7452326 7452385 -181827169 + (TTA)n Simple_repeat Simple_repeat 2 60 0 237 65 0 0 chr6 7452840 7452871 -181826683 + (T)n Simple_repeat Simple_repeat 1 31 0 1545 175 0 15 chr6 7453505 7453779 -181825775 + AluJo SINE Alu 9 278 -34 2251 82 3 0 chr6 7454237 7454528 -181825026 + AluY SINE Alu 1 292 -19 2081 103 10 3 chr6 7454533 7454835 -181824719 + AluSx SINE Alu 1 304 -8 433 274 117 11 chr6 7455162 7455341 -181824213 + MIR SINE MIR 13 210 -52 305 172 17 0 chr6 7455756 7455814 -181823740 + MER5A DNA MER1_type 9 67 -122 841 152 48 48 chr6 7455829 7455994 -181823560 + FRAM SINE Alu 2 166 0 181 247 278 10 chr6 7455998 7456095 -181823459 + MER5A DNA MER1_type 61 183 -6 339 179 328 22 chr6 7457391 7457525 -181822029 - MLT1G LTR MaLR 0 590 416 274 296 49 45 chr6 7457590 7457630 -181821924 + MER5A DNA MER1_type 29 67 -122 2190 114 0 0 chr6 7457630 7457929 -181821625 + AluSq SINE Alu 1 299 -14 274 296 49 45 chr6 7457929 7458038 -181821516 + MER5A DNA MER1_type 67 186 -3 1655 162 4 22 chr6 7458454 7458732 -181820822 - AluSx SINE Alu -35 277 5 1897 129 13 13 chr6 7458744 7459055 -181820499 - AluJb SINE Alu -1 311 1 841 239 112 15 chr6 7459174 7459442 -181820112 - MER45C DNA AcHobo -659 294 1 195 100 0 0 chr6 7460269 7460299 -181819255 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 841 169 15 0 chr6 7461108 7461238 -181818316 + FLAM_A SINE Alu 1 132 -1 660 210 0 8 chr6 7461520 7461639 -181817915 + FLAM_C SINE Alu 2 119 -24 180 0 0 0 chr6 7461640 7461660 -181817894 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2122 114 0 3 chr6 7464001 7464298 -181815256 - AluSq SINE Alu -17 296 1 2153 83 43 0 chr6 7464824 7465124 -181814430 - AluSp SINE Alu 0 313 1 188 67 33 0 chr6 7465135 7465165 -181814389 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2306 99 0 3 chr6 7465169 7465483 -181814071 - AluSq SINE Alu 0 313 1 1253 215 115 6 chr6 7466057 7466387 -181813167 + MLT1B LTR MaLR 9 374 -16 2024 139 0 0 chr6 7466723 7467026 -181812528 - AluSx SINE Alu -7 305 3 180 219 14 110 chr6 7467339 7467412 -181812142 + L3 LINE CR1 1493 1558 -19 892 274 161 11 chr6 7467495 7467949 -181811605 + LTR41 LTR ERVL 1 564 -209 540 90 0 26 chr6 7467982 7468060 -181811494 - Alu SINE Alu -9 301 226 369 229 57 57 chr6 7468061 7468201 -181811353 + LTR41 LTR ERVL 620 759 -14 536 243 77 0 chr6 7468874 7469043 -181810511 + MER5A DNA MER1_type 7 188 -1 188 244 13 39 chr6 7469156 7469234 -181810320 - MER5A DNA MER1_type -26 163 88 216 278 0 0 chr6 7469676 7469730 -181809824 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 299 214 137 34 chr6 7470989 7471106 -181808448 - L2 LINE L2 -1 3312 3184 1906 246 79 35 chr6 7471267 7471710 -181807844 + L1MC4 LINE L1 7348 7829 -213 2402 73 17 0 chr6 7471710 7472010 -181807544 + AluSp SINE Alu 1 305 -8 1906 246 79 35 chr6 7472010 7472215 -181807339 + L1MC4 LINE L1 7829 8024 -18 2320 103 0 3 chr6 7472753 7473054 -181806500 + AluSp SINE Alu 1 300 -13 267 291 145 0 chr6 7473161 7473278 -181806276 + MIR SINE MIR 33 166 -96 196 186 0 0 chr6 7475343 7475386 -181804168 - MER5A DNA MER1_type -34 155 113 * 213 236 101 34 chr6 7475352 7475441 -181804113 + MER5A DNA MER1_type 54 148 -41 657 0 80 0 chr6 7475677 7475790 -181803764 + (TA)n Simple_repeat Simple_repeat 2 123 0 2265 82 21 0 chr6 7475790 7476072 -181803482 - AluSg SINE Alu -22 288 1 456 273 258 22 chr6 7476152 7476419 -181803135 + L3 LINE CR1 1235 1564 -13 324 250 73 0 chr6 7476672 7476768 -181802786 - MIR SINE MIR -108 154 52 903 101 0 81 chr6 7476809 7476958 -181802596 - AluJo SINE Alu -175 137 1 1730 149 0 30 chr6 7477659 7477954 -181801600 + AluSx SINE Alu 3 288 -24 2501 51 0 0 chr6 7477964 7478256 -181801298 + AluY SINE Alu 1 292 -19 1219 113 0 0 chr6 7478259 7478449 -181801105 + AluSg/x SINE Alu 125 314 0 723 128 9 0 chr6 7478515 7478624 -181800930 - FLAM_C SINE Alu -32 111 2 2207 137 0 0 chr6 7478637 7478944 -181800610 - AluSx SINE Alu -5 307 1 383 218 119 10 chr6 7479451 7479552 -181800002 + MIR SINE MIR 61 172 -90 192 245 153 61 chr6 7479553 7479651 -181799903 - L2 LINE L2 -13 3300 3194 288 0 0 0 chr6 7479689 7479721 -181799833 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 7479720 7479749 -181799805 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2157 88 11 14 chr6 7479776 7480059 -181799495 - AluSx SINE Alu -30 282 1 2547 63 0 0 chr6 7480592 7480894 -181798660 + AluY SINE Alu 1 302 -9 2260 110 3 0 chr6 7480907 7481206 -181798348 + AluSx SINE Alu 1 300 -12 227 206 137 0 chr6 7481398 7481471 -181798083 - L1ME4a LINE L1 -70 6051 5969 2244 92 35 0 chr6 7482069 7482351 -181797203 - AluSg SINE Alu -18 292 1 22 0 0 0 chr6 7484400 7484422 -181795132 + AT_rich Low_complexity Low_complexity 1 22 0 2146 100 7 17 chr6 7484455 7484611 -181794943 - AluSx SINE Alu -24 288 135 2287 114 0 0 chr6 7484611 7484908 -181794646 - AluSx SINE Alu -15 297 1 2146 100 7 17 chr6 7484908 7485042 -181794512 - AluSx SINE Alu -177 135 1 200 205 384 13 chr6 7485914 7486065 -181793489 - MIR SINE MIR -18 244 38 1951 146 6 16 chr6 7486755 7487070 -181792484 + AluSx SINE Alu 1 312 0 213 329 95 25 chr6 7487376 7487534 -181792020 + MIR SINE MIR 82 250 -12 2157 90 10 29 chr6 7487989 7488300 -181791254 + AluSx SINE Alu 1 305 -7 1024 128 60 0 chr6 7492261 7492410 -181787144 - AluSg/x SINE Alu -18 292 135 2067 125 3 23 chr6 7492473 7492776 -181786778 + AluSx SINE Alu 1 297 -15 2006 140 14 3 chr6 7493151 7493444 -181786110 + AluJb SINE Alu 1 296 -16 210 301 174 36 chr6 7493456 7493898 -181785656 + L2 LINE L2 2196 2698 -616 749 194 0 8 chr6 7493912 7494046 -181785508 - FLAM_A SINE Alu 0 133 1 549 241 30 60 chr6 7494368 7494534 -181785020 + MER8 DNA MER2_type 1 161 -78 22 35 0 0 chr6 7494535 7494564 -181784990 + AT_rich Low_complexity Low_complexity 1 29 0 1431 108 19 0 chr6 7494567 7494780 -181784774 - L1PB2 LINE L1 -5 6146 5930 1459 163 106 4 chr6 7494811 7495075 -181784479 - AluJb SINE Alu -21 291 1 366 134 15 30 chr6 7495143 7495210 -181784344 - Tigger2 DNA MER2_type -2651 67 2 359 349 11 37 chr6 7495448 7495637 -181783917 + L1MC4a LINE L1 5682 5865 -1943 2212 88 0 11 chr6 7495767 7496081 -181783473 + AluSx SINE Alu 1 311 0 695 183 9 0 chr6 7496914 7497029 -181782525 - FLAM_A SINE Alu -17 116 1 345 264 0 58 chr6 7498007 7498128 -181781426 + G-rich Low_complexity Low_complexity 2 115 0 1854 166 13 0 chr6 7498300 7498601 -181780953 + AluJb SINE Alu 1 305 -7 1777 180 3 10 chr6 7498805 7499105 -181780449 + AluJo SINE Alu 1 298 -14 609 183 8 32 chr6 7500387 7500513 -181779041 + FLAM_A SINE Alu 1 123 -10 1961 118 38 3 chr6 7500779 7501066 -181778488 + AluSp SINE Alu 2 298 -15 240 333 61 25 chr6 7501486 7501684 -181777870 + L3b LINE CR1 1266 1470 -113 2370 98 0 0 chr6 7502007 7502303 -181777251 - AluSx SINE Alu -15 297 2 323 313 46 30 chr6 7502996 7503127 -181776427 - MER117 DNA MER1_type -57 140 8 2233 111 7 0 chr6 7503845 7504143 -181775411 + AluSc SINE Alu 1 300 -9 2352 84 7 13 chr6 7504218 7504526 -181775028 + AluSg SINE Alu 1 306 -4 767 142 0 0 chr6 7504578 7504698 -181774856 + AluSg/x SINE Alu 171 290 -20 1823 107 103 4 chr6 7505070 7505341 -181774213 + AluSx SINE Alu 1 298 -14 263 308 55 0 chr6 7505497 7505588 -181773966 - MER5A DNA MER1_type -84 105 10 696 204 27 34 chr6 7505605 7505752 -181773802 - MER58B DNA MER1_type 0 341 196 265 233 167 0 chr6 7505940 7506030 -181773524 + L1MB7 LINE L1 6079 6183 -1 225 215 77 0 chr6 7507010 7507075 -181772479 - L2 LINE L2 -1757 1557 1488 2278 75 0 52 chr6 7507497 7507804 -181771750 - AluY SINE Alu -20 291 1 2402 53 0 4 chr6 7507996 7508277 -181771277 + AluY SINE Alu 1 280 -31 1598 155 62 0 chr6 7508912 7509170 -181770384 - AluJo SINE Alu -21 291 18 218 218 95 129 chr6 7510036 7510183 -181769371 + L2 LINE L2 3136 3277 -36 1938 137 0 23 chr6 7510534 7510833 -181768721 + AluJo SINE Alu 1 292 -20 2646 94 16 11 chr6 7510862 7511235 -181768319 + THE1C LTR MaLR 1 375 0 966 174 0 18 chr6 7511586 7511753 -181767801 - FRAM SINE Alu -2 164 1 2159 131 3 0 chr6 7511991 7512297 -181767257 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 7513028 7513058 -181766496 + AT_rich Low_complexity Low_complexity 1 30 0 2187 104 0 3 chr6 7515031 7515319 -181764235 - AluSx SINE Alu -25 287 1 494 256 128 10 chr6 7515570 7515765 -181763789 - MIR SINE MIR -24 238 21 2182 91 144 6 chr6 7516062 7516403 -181763151 - pTR5 LTR ERV1 -2046 392 5 1209 181 19 39 chr6 7516400 7516966 -181762588 + pTR5 LTR ERV1 743 1346 -1092 * 2537 185 209 41 chr6 7516979 7517683 -181761871 + LTR12 LTR ERV1 4 825 -1 3917 152 190 40 chr6 7517683 7518642 -181760912 - pTR5 LTR ERV1 -404 1756 31 2231 107 0 17 chr6 7519758 7520056 -181759498 - AluSx SINE Alu -19 293 1 458 268 159 22 chr6 7520057 7520333 -181759221 + L2 LINE L2 2999 3312 -1 204 40 0 0 chr6 7520495 7520520 -181759034 + (A)n Simple_repeat Simple_repeat 1 25 0 615 308 147 22 chr6 7520731 7520779 -181758775 + L2 LINE L2 1445 1486 -1828 2056 123 17 3 chr6 7520779 7521072 -181758482 - AluJo SINE Alu -5 307 11 615 308 147 22 chr6 7521072 7521439 -181758115 + L2 LINE L2 1486 1912 -1402 807 273 73 57 chr6 7521556 7521580 -181757974 + HERV16 LTR ERVL 1165 1187 -3809 1067 220 125 32 chr6 7521580 7521795 -181757759 - MER2 DNA MER2_type -2 342 88 2424 68 0 0 chr6 7521795 7522087 -181757467 - AluY SINE Alu -19 292 1 1067 220 125 32 chr6 7522087 7522184 -181757370 - MER2 DNA MER2_type -256 88 1 807 273 73 57 chr6 7522184 7522600 -181756954 + HERV16 LTR ERVL 1187 1595 -3401 2453 92 0 0 chr6 7522600 7522906 -181756648 + AluSc SINE Alu 1 306 -3 807 273 73 57 chr6 7522906 7522959 -181756595 + HERV16 LTR ERVL 1595 1646 -3350 1058 171 89 131 chr6 7522959 7523122 -181756432 + MLT1A1 LTR MaLR 1 169 -196 2205 135 0 0 chr6 7523122 7523426 -181756128 - AluSx SINE Alu -8 304 1 1058 171 89 131 chr6 7523426 7523572 -181755982 + MLT1A1 LTR MaLR 169 294 -71 2441 82 0 0 chr6 7523572 7523875 -181755679 - AluSc SINE Alu -6 303 1 1058 171 89 131 chr6 7523875 7523945 -181755609 + MLT1A1 LTR MaLR 294 365 0 807 273 73 57 chr6 7523945 7524045 -181755509 + HERV16 LTR ERVL 1646 1833 -3163 353 270 43 26 chr6 7524154 7524269 -181755285 + HERV16 LTR ERVL 2334 2450 -2546 597 229 0 0 chr6 7524422 7524553 -181755001 + L1MB7 LINE L1 6039 6169 -15 181 231 116 33 chr6 7526198 7526319 -181753235 + L2 LINE L2 1554 1684 -1630 350 57 19 0 chr6 7526648 7526701 -181752853 + (TA)n Simple_repeat Simple_repeat 1 54 0 2266 111 0 13 chr6 7526702 7527008 -181752546 - AluSx SINE Alu -10 302 1 651 136 34 25 chr6 7527229 7527347 -181752207 - AluJo SINE Alu -18 294 176 438 171 48 19 chr6 7527373 7527478 -181752076 - AluJo SINE Alu -118 194 87 2508 65 0 7 chr6 7527479 7527786 -181751768 - AluY SINE Alu -6 305 1 2012 127 0 0 chr6 7528415 7528691 -181750863 - AluSx SINE Alu -13 299 24 647 143 107 0 chr6 7528691 7528803 -181750751 - AluSq/x SINE Alu -187 125 2 2340 75 4 0 chr6 7529010 7529291 -181750263 + AluSp SINE Alu 1 282 -31 270 0 0 0 chr6 7529294 7529324 -181750230 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1961 155 6 3 chr6 7529922 7530235 -181749319 + L1MA5 LINE L1 5950 6266 -34 414 0 0 0 chr6 7530235 7530281 -181749273 + (TG)n Simple_repeat Simple_repeat 2 47 0 2226 114 0 3 chr6 7530296 7530594 -181748960 - AluSx SINE Alu -15 297 1 233 152 43 0 chr6 7530594 7530640 -181748914 + L1MA6 LINE L1 6253 6300 0 659 345 26 7 chr6 7530702 7531006 -181748548 - L2 LINE L2 -452 2862 2553 2061 144 3 0 chr6 7531467 7531773 -181747781 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 7532275 7532303 -181747251 + AT_rich Low_complexity Low_complexity 1 28 0 2410 104 0 0 chr6 7534303 7534612 -181744942 - AluSq SINE Alu -4 309 1 297 51 0 0 chr6 7535000 7535039 -181744515 + (TA)n Simple_repeat Simple_repeat 2 40 0 2384 79 3 0 chr6 7535039 7535329 -181744225 - AluSx SINE Alu -21 291 1 21 0 0 0 chr6 7535351 7535372 -181744182 + AT_rich Low_complexity Low_complexity 1 21 0 2083 142 10 0 chr6 7535808 7536117 -181743437 + AluJb SINE Alu 1 312 0 1827 193 86 29 chr6 7536224 7536702 -181742852 - MLT1D LTR MaLR 0 505 1 694 194 49 170 chr6 7536740 7536959 -181742595 - MER102a DNA MER1_type -1087 330 179 1786 161 18 7 chr6 7536959 7537238 -181742316 - AluJo SINE Alu -30 282 1 694 194 49 170 chr6 7537238 7537390 -181742164 - MER102a DNA MER1_type -1238 179 10 4902 207 98 16 chr6 7537837 7537869 -181741685 - L1MC/D LINE L1 -758 5388 5360 1998 162 0 0 chr6 7537869 7538171 -181741383 - AluSx SINE Alu -10 302 1 4902 207 98 16 chr6 7538171 7538402 -181741152 - L1MC/D LINE L1 -786 5360 5149 2379 84 7 19 chr6 7538402 7538711 -181740843 + AluSg SINE Alu 1 305 -5 4902 207 98 16 chr6 7538711 7539912 -181739642 - L1MC/D LINE L1 -997 5149 3843 322 173 39 0 chr6 7539940 7539992 -181739562 - MLT1D LTR MaLR -418 87 34 647 92 11 0 chr6 7540021 7540132 -181739422 - L1PB1 LINE L1 -100 6051 5940 5430 91 8 2 chr6 7540960 7541802 -181737752 - L1PB1 LINE L1 -178 5973 5128 1212 219 0 7 chr6 7544033 7544321 -181735233 - L1PB1 LINE L1 -1018 5128 4843 1701 97 0 9 chr6 7544352 7544579 -181734975 + AluSg/x SINE Alu 87 311 -1 4503 160 132 45 chr6 7545386 7546836 -181732718 + pTR5 LTR ERV1 730 2438 0 2153 106 14 7 chr6 7547007 7547299 -181732255 + AluY SINE Alu 1 294 -17 466 88 15 0 chr6 7547448 7547516 -181732038 - MER41B LTR ERV1 -86 549 481 1876 152 21 0 chr6 7547634 7547923 -181731631 + AluJo SINE Alu 1 295 -17 1846 166 0 34 chr6 7547926 7548246 -181731308 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 7548395 7548424 -181731130 + AT_rich Low_complexity Low_complexity 1 29 0 13115 186 26 33 chr6 7548438 7551012 -181728542 + L1PB1 LINE L1 6 2596 -4300 2172 125 6 3 chr6 7551012 7551324 -181728230 + AluSq SINE Alu 1 313 0 13115 186 26 33 chr6 7551324 7552880 -181726674 + L1PB1 LINE L1 2596 4161 -2735 209 81 0 27 chr6 7552880 7552917 -181726637 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 13115 186 26 33 chr6 7552917 7555058 -181724496 + L1PB1 LINE L1 4161 6511 -385 414 0 0 0 chr6 7555058 7555104 -181724450 + (CA)n Simple_repeat Simple_repeat 2 47 0 13115 186 26 33 chr6 7555104 7555488 -181724066 + L1PB1 LINE L1 6511 6896 0 32 26 0 0 chr6 7555523 7555562 -181723992 + AT_rich Low_complexity Low_complexity 1 39 0 1680 174 24 7 chr6 7557081 7557379 -181722175 + AluJo SINE Alu 1 303 -9 2274 96 13 3 chr6 7558157 7558459 -181721095 - AluSx SINE Alu -7 305 1 234 257 11 140 chr6 7559061 7559146 -181720408 - L1MA10 LINE L1 -4 6330 6236 1563 129 0 0 chr6 7559146 7559370 -181720184 - AluSg/x SINE Alu -3 307 84 234 257 11 140 chr6 7559370 7559389 -181720165 - L1MA10 LINE L1 -98 6236 6216 396 0 0 0 chr6 7559389 7559433 -181720121 + (TA)n Simple_repeat Simple_repeat 2 45 0 2587 182 29 76 chr6 7559441 7559920 -181719634 - L1ME1 LINE L1 -92 6074 5574 1285 167 114 43 chr6 7559920 7560201 -181719353 + AluJo SINE Alu 1 301 -11 2587 182 29 76 chr6 7560201 7560413 -181719141 - L1ME1 LINE L1 -592 5574 5416 2325 92 3 3 chr6 7560413 7560708 -181718846 - AluSq SINE Alu -18 295 1 2587 182 29 76 chr6 7560708 7560740 -181718814 - L1ME1 LINE L1 -750 5416 5384 2080 168 104 28 chr6 7561195 7561664 -181717890 - MLT1D LTR MaLR 0 505 1 2195 109 0 10 chr6 7562023 7562326 -181717228 + AluSx SINE Alu 1 300 -12 772 222 144 92 chr6 7564090 7564343 -181715211 - L1MC5 LINE L1 -1 7960 7722 1967 131 3 20 chr6 7564343 7564648 -181714906 + AluSx SINE Alu 1 300 -12 772 222 144 92 chr6 7564648 7565060 -181714494 - L1MC5 LINE L1 -239 7722 7260 571 220 30 18 chr6 7565192 7565360 -181714194 - L1MC5 LINE L1 -733 7228 7059 2290 108 0 3 chr6 7565824 7566129 -181713425 - AluSg SINE Alu -6 304 1 21 0 0 0 chr6 7567297 7567318 -181712236 + AT_rich Low_complexity Low_complexity 1 21 0 2346 103 0 0 chr6 7567325 7567626 -181711928 + AluSx SINE Alu 1 301 -11 2407 215 75 2 chr6 7567686 7568203 -181711351 + MER68 LTR ERV1 1 555 -7 368 267 68 19 chr6 7568376 7568582 -181710972 - L1MC5 LINE L1 -22 7939 7724 214 178 0 0 chr6 7568640 7568685 -181710869 + T-rich Low_complexity Low_complexity 1 45 0 1482 148 4 4 chr6 7568707 7568936 -181710618 - AluJb SINE Alu -83 229 1 2206 96 0 60 chr6 7569314 7569646 -181709908 + AluSx SINE Alu 1 312 0 2424 77 6 6 chr6 7570357 7570669 -181708885 - AluSq SINE Alu -1 312 1 403 235 71 0 chr6 7570732 7570830 -181708724 - MIR SINE MIR -109 153 49 1594 138 14 86 chr6 7571530 7571653 -181707901 - Charlie1b DNA MER1_type -2241 520 390 1647 172 11 11 chr6 7571653 7571952 -181707602 - AluJo SINE Alu 0 304 6 1594 138 14 86 chr6 7571952 7572250 -181707304 - Charlie1b DNA MER1_type -2371 390 53 1186 148 28 0 chr6 7572477 7572659 -181706895 + MER5A DNA MER1_type 3 189 0 2207 107 0 22 chr6 7572862 7573180 -181706374 + AluSx SINE Alu 1 311 -1 2276 101 10 0 chr6 7573551 7573847 -181705707 + AluSx SINE Alu 1 299 -13 1718 168 0 31 chr6 7574020 7574312 -181705242 - AluJo SINE Alu -2 310 28 2150 134 0 13 chr6 7576109 7576423 -181703131 + AluSx SINE Alu 1 310 -2 2369 100 0 3 chr6 7576490 7576800 -181702754 + AluSc SINE Alu 1 309 0 1325 192 91 25 chr6 7576816 7577102 -181702452 + AluJb SINE Alu 1 305 -7 524 292 35 59 chr6 7577185 7577292 -181702262 + L2 LINE L2 2722 2830 -442 1577 194 96 72 chr6 7577292 7577469 -181702085 + MSTD LTR MaLR 1 172 -224 2104 110 0 0 chr6 7577469 7577798 -181701756 + AluY SINE Alu 1 329 0 1577 194 96 72 chr6 7577798 7578006 -181701548 + MSTD LTR MaLR 172 396 0 524 292 35 59 chr6 7578006 7578290 -181701264 + L2 LINE L2 2830 3091 -181 433 275 19 50 chr6 7578447 7578607 -181700947 + L2 LINE L2 3158 3312 -1 2007 129 26 13 chr6 7578822 7579124 -181700430 + AluSg SINE Alu 1 306 -4 368 164 0 0 chr6 7579490 7579551 -181700003 + MER41A LTR ERV1 400 460 -94 24 32 0 0 chr6 7579811 7579842 -181699712 + AT_rich Low_complexity Low_complexity 1 31 0 682 228 7 13 chr6 7580740 7580889 -181698665 - MIR SINE MIR -59 203 56 2011 212 98 4 chr6 7581149 7581626 -181697928 - MER119 DNA MER1_type -3 580 59 2287 103 0 0 chr6 7581720 7582012 -181697542 + AluSx SINE Alu 5 296 -16 694 245 165 64 chr6 7582067 7582473 -181697081 - L1ME LINE L1 -354 5808 5444 2301 137 23 35 chr6 7582473 7582868 -181696686 + MLT1B LTR MaLR 1 390 0 694 245 165 64 chr6 7582868 7582898 -181696656 - L1ME LINE L1 -718 5444 5418 2231 103 14 0 chr6 7582898 7583190 -181696364 - AluSx SINE Alu -16 296 1 694 245 165 64 chr6 7583190 7583203 -181696351 - L1ME LINE L1 -744 5418 5408 2349 81 7 0 chr6 7583203 7583499 -181696055 - AluY SINE Alu -13 298 1 694 245 165 64 chr6 7583499 7583546 -181696008 - L1ME LINE L1 -754 5408 5257 2205 97 3 3 chr6 7583674 7583962 -181695592 - AluSg SINE Alu -22 288 1 1633 137 15 8 chr6 7584102 7584365 -181695189 + AluSg SINE Alu 37 301 -9 1911 140 74 37 chr6 7584390 7584741 -181694813 + THE1B LTR MaLR 1 364 0 744 276 123 27 chr6 7584754 7585547 -181694007 - L1ME LINE L1 -1100 5046 4164 1853 59 0 0 chr6 7585547 7585766 -181693788 - AluY SINE Alu -47 264 46 744 276 123 27 chr6 7585766 7585784 -181693770 - L1ME LINE L1 -1982 4164 4149 809 182 8 0 chr6 7585919 7586051 -181693503 + FLAM_C SINE Alu 1 133 0 1433 185 65 7 chr6 7586154 7586430 -181693124 - AluJb SINE Alu -18 294 3 2342 98 3 0 chr6 7586432 7586739 -181692815 - AluSp SINE Alu -5 308 1 814 229 13 13 chr6 7586744 7586901 -181692653 - FRAM SINE Alu -19 157 1 537 224 34 142 chr6 7586944 7587149 -181692405 + MIR SINE MIR 45 227 -35 1353 126 0 0 chr6 7588049 7588239 -181691315 - AluSg/x SINE Alu -40 270 81 2421 50 3 47 chr6 7589172 7589490 -181690064 + AluY SINE Alu 1 304 -7 456 227 70 64 chr6 7591810 7591982 -181687572 - L2 LINE L2 -7 3306 3134 868 281 191 11 chr6 7592059 7592503 -181687051 - L2 LINE L2 -337 2977 2454 499 337 122 25 chr6 7592622 7592901 -181686653 - L2 LINE L2 -9 3263 2958 948 157 0 76 chr6 7593043 7593241 -181686313 + MER20 DNA MER1_type 1 183 -36 718 238 85 68 chr6 7593524 7593805 -181685749 + MER102b DNA MER1_type 33 318 -23 890 147 61 37 chr6 7593951 7594114 -181685440 - FRAM SINE Alu -5 171 5 27 62 0 0 chr6 7594407 7594455 -181685099 + AT_rich Low_complexity Low_complexity 1 48 0 209 266 0 0 chr6 7594604 7594668 -181684886 + (ATG)n Simple_repeat Simple_repeat 3 66 0 384 264 155 19 chr6 7594987 7595142 -181684412 + L1ME4a LINE L1 5323 5478 -643 405 280 88 16 chr6 7595235 7595417 -181684137 + L1ME4a LINE L1 5671 5865 -256 2305 96 0 0 chr6 7595586 7595889 -181683665 + AluSx SINE Alu 1 303 -9 2312 115 3 0 chr6 7596666 7596970 -181682584 + AluSp SINE Alu 1 305 -8 2025 146 7 0 chr6 7597148 7597442 -181682112 - AluJb SINE Alu -16 296 1 252 0 0 0 chr6 7598327 7598355 -181681199 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 131 0 0 chr6 7598416 7598722 -181680832 + AluSx SINE Alu 1 306 -6 2527 61 0 3 chr6 7599295 7599606 -181679948 + AluY SINE Alu 2 311 0 517 194 0 20 chr6 7599668 7599766 -181679788 + FLAM_A SINE Alu 41 136 -6 638 243 153 16 chr6 7601630 7601819 -181677735 - MER58C DNA MER1_type 0 215 1 1289 155 120 11 chr6 7601827 7602111 -181677443 + MER33 DNA MER1_type 1 315 -9 1857 149 42 0 chr6 7603124 7603413 -181676141 - AluSx SINE Alu -11 301 1 1707 148 102 31 chr6 7603517 7603842 -181675712 - MER7A DNA MER2_type 0 346 1 321 327 26 18 chr6 7604579 7604692 -181674862 - L2 LINE L2 -489 2825 2712 586 215 74 0 chr6 7605084 7605247 -181674307 + MER104 DNA MER2_type 4 178 -2 1345 174 4 8 chr6 7606830 7607065 -181672489 - MER46A DNA MER2_type 0 236 3 234 91 0 0 chr6 7607212 7607245 -181672309 + (T)n Simple_repeat Simple_repeat 1 33 0 213 121 0 0 chr6 7607385 7607418 -181672136 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1962 168 3 0 chr6 7607421 7607731 -181671823 - AluJb SINE Alu -1 311 1 4786 141 59 50 chr6 7607755 7608097 -181671457 - L1MB3 LINE L1 -1 6182 5845 1935 137 7 7 chr6 7608097 7608396 -181671158 - AluSx SINE Alu -13 299 1 4786 141 59 50 chr6 7608396 7608922 -181670632 - L1MB3 LINE L1 -338 5845 5307 1334 209 10 39 chr6 7608922 7609228 -181670326 - AluJo SINE Alu -15 297 1 4786 141 59 50 chr6 7609228 7609419 -181670135 - L1MB3 LINE L1 -876 5307 5119 2067 136 3 3 chr6 7609476 7609771 -181669783 - AluSx SINE Alu -17 295 1 193 277 77 31 chr6 7610035 7610100 -181669454 + L2 LINE L2 3246 3313 0 2382 97 3 0 chr6 7610144 7610455 -181669099 - AluSp SINE Alu -1 312 1 876 134 20 7 chr6 7610457 7610606 -181668948 - AluYa8 SINE Alu -10 300 150 304 95 0 0 chr6 7610606 7610648 -181668906 - AluSq SINE Alu -129 174 133 513 0 0 0 chr6 7610648 7610705 -181668849 + (TG)n Simple_repeat Simple_repeat 2 58 0 1905 131 4 0 chr6 7610705 7610973 -181668581 - AluSg SINE Alu -28 282 14 299 29 0 0 chr6 7610973 7611007 -181668547 - AluY SINE Alu -251 50 17 1136 133 5 51 chr6 7611007 7611202 -181668352 - AluSx SINE Alu -124 188 3 180 0 0 0 chr6 7611230 7611250 -181668304 + (A)n Simple_repeat Simple_repeat 1 20 0 1507 165 64 32 chr6 7613214 7613513 -181666041 - MER58D DNA MER1_type -2050 370 82 2267 105 0 0 chr6 7613513 7613807 -181665747 + AluSx SINE Alu 1 294 -18 2194 99 14 3 chr6 7613807 7614101 -181665453 + AluSx SINE Alu 1 297 -15 1507 165 64 32 chr6 7614101 7614145 -181665409 - MER58D DNA MER1_type -2337 83 15 30 77 0 0 chr6 7614448 7614513 -181665041 + AT_rich Low_complexity Low_complexity 1 65 0 2430 202 7 0 chr6 7616177 7616602 -181662952 + Tigger7 DNA MER2_type 2 429 -304 1385 162 131 4 chr6 7616602 7616861 -181662693 + AluJo SINE Alu 16 307 -5 2433 130 46 23 chr6 7616861 7617252 -181662302 + Tigger7 DNA MER2_type 440 839 -1648 1570 136 62 0 chr6 7617251 7617493 -181662061 + Tigger7 DNA MER2_type 2227 2483 -4 * 2497 51 14 0 chr6 7617801 7618095 -181661459 + AluY SINE Alu 1 298 -13 999 164 0 0 chr6 7618108 7618267 -181661287 + FRAM SINE Alu 1 159 -17 1953 137 3 22 chr6 7618400 7618714 -181660840 + AluJb SINE Alu 5 312 0 22 0 0 0 chr6 7619129 7619151 -181660403 + AT_rich Low_complexity Low_complexity 1 22 0 1180 235 256 14 chr6 7619483 7620246 -181659308 - L2 LINE L2 0 3313 2369 2268 107 13 0 chr6 7621384 7621684 -181657870 - AluSx SINE Alu -8 304 1 217 182 23 23 chr6 7622585 7622629 -181656925 + MIR SINE MIR 141 184 -78 456 277 45 6 chr6 7622751 7622928 -181656626 + L1MC5 LINE L1 7260 7443 -518 2367 105 0 0 chr6 7622943 7623238 -181656316 + AluSg SINE Alu 1 295 -15 583 215 90 65 chr6 7623281 7623635 -181655919 + L1MC5 LINE L1 7554 7916 -45 693 138 16 16 chr6 7623656 7623779 -181655775 - AluJo/FRAM SINE Alu -25 287 165 369 97 113 0 chr6 7623779 7623841 -181655713 - AluJ/FLAM SINE Alu -233 69 1 2553 84 0 0 chr6 7624181 7624492 -181655062 + AluSx SINE Alu 1 311 -1 595 219 47 111 chr6 7624498 7624795 -181654759 + L2 LINE L2 3030 3307 -6 2220 100 43 0 chr6 7625200 7625499 -181654055 + AluSx SINE Alu 1 312 0 240 265 45 106 chr6 7625905 7626037 -181653517 + MIR3 SINE MIR 76 199 -9 2353 107 0 0 chr6 7626118 7626427 -181653127 + AluY SINE Alu 1 309 -2 1845 90 13 87 chr6 7626745 7627044 -181652510 - AluSq SINE Alu -6 307 31 8572 157 42 30 chr6 7627044 7628720 -181650834 + pTR5 LTR ERV1 743 2438 0 1579 183 39 0 chr6 7628871 7629156 -181650398 + AluSq SINE Alu 1 296 -17 297 230 59 16 chr6 7629226 7629320 -181650234 + MIR3 SINE MIR 80 162 -46 703 184 160 10 chr6 7629324 7629530 -181650024 + MER33 DNA MER1_type 1 237 -87 1684 164 29 0 chr6 7629656 7629931 -181649623 + AluJo SINE Alu 1 283 -29 720 163 81 73 chr6 7630298 7630313 -181649241 - L1MA4 LINE L1 -2 6298 6285 2344 96 0 3 chr6 7630313 7630606 -181648948 + AluSg SINE Alu 1 292 -18 720 163 81 73 chr6 7630606 7630715 -181648839 - L1MA4 LINE L1 -15 6285 6178 2028 130 0 42 chr6 7630715 7631022 -181648532 + AluSx SINE Alu 1 294 -18 720 163 81 73 chr6 7631022 7631142 -181648412 - L1MA4 LINE L1 -122 6178 6051 2187 101 30 7 chr6 7631623 7631919 -181647635 - AluSq SINE Alu -10 303 1 22 0 0 0 chr6 7632030 7632052 -181647502 + AT_rich Low_complexity Low_complexity 1 22 0 1573 190 46 23 chr6 7632080 7632385 -181647169 + AluJo SINE Alu 1 312 0 234 239 111 43 chr6 7632645 7632750 -181646804 + MIR3 SINE MIR 51 162 -46 2132 116 7 3 chr6 7635095 7635387 -181644167 - AluSx SINE Alu -19 293 1 919 98 53 0 chr6 7635457 7635589 -181643965 + MER85 DNA T2_type 1 139 0 1780 173 23 23 chr6 7635644 7635950 -181643604 - AluJb SINE Alu -6 306 1 233 213 0 0 chr6 7636281 7636328 -181643226 + (CA)n Simple_repeat Simple_repeat 2 48 0 2983 143 84 2 chr6 7636610 7637637 -181641917 + L1M3f LINE L1 84 1216 -4112 2368 112 0 10 chr6 7637647 7637959 -181641595 + AluSx SINE Alu 1 309 -3 2276 116 3 0 chr6 7638114 7638415 -181641139 - AluSx SINE Alu -10 302 1 1482 189 13 31 chr6 7638644 7639071 -181640483 + AluJb SINE Alu 1 448 -20 213 39 0 0 chr6 7639071 7639097 -181640457 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 1482 189 13 31 chr6 7639097 7639118 -181640436 + AluJb SINE Alu 448 468 0 2067 118 11 0 chr6 7639233 7639543 -181640011 + AluSp SINE Alu 1 313 0 2222 113 6 31 chr6 7639885 7640203 -181639351 - AluSg SINE Alu 0 310 1 1781 173 3 20 chr6 7640540 7640840 -181638714 - AluJo SINE Alu -12 300 6 377 198 79 0 chr6 7640940 7641066 -181638488 - HAL1 LINE L1 -134 2373 2238 539 179 9 9 chr6 7641119 7641225 -181638329 - FLAM_A SINE Alu -9 133 28 298 328 129 23 chr6 7641233 7641629 -181637925 - HAL1 LINE L1 -345 2162 1725 245 167 139 100 chr6 7641599 7641736 -181637818 - HAL1 LINE L1 -1330 1177 1030 * 2462 70 0 10 chr6 7641736 7642048 -181637506 + AluSc SINE Alu 1 309 0 245 167 139 100 chr6 7642048 7642090 -181637464 - HAL1 LINE L1 -1477 1030 991 331 176 0 44 chr6 7642110 7642178 -181637376 + MER74C LTR ERVL 6 70 -390 386 221 101 40 chr6 7642348 7642497 -181637057 - HAL1 LINE L1 -1994 513 356 7039 170 93 39 chr6 7642537 7644146 -181635408 + pTR5 LTR ERV1 743 2438 0 319 113 72 124 chr6 7644727 7644805 -181634749 - MER97a DNA MER1_type? -719 175 101 1705 168 0 14 chr6 7644805 7645096 -181634458 - AluJb SINE Alu -25 287 1 319 113 72 124 chr6 7645096 7645114 -181634440 - MER97a DNA MER1_type? -793 101 84 202 273 0 0 chr6 7645347 7645391 -181634163 - L2 LINE L2 -2 3311 3268 2109 116 10 0 chr6 7645434 7645726 -181633828 + AluSq SINE Alu 1 295 -18 2280 79 0 40 chr6 7645726 7646029 -181633525 + AluY SINE Alu 1 292 -19 2159 115 3 16 chr6 7646071 7646385 -181633169 - AluSx SINE Alu -2 310 1 230 368 132 0 chr6 7646815 7646989 -181632565 - L2 LINE L2 -564 2750 2554 2102 135 21 12 chr6 7648008 7648342 -181631212 - MER1B DNA MER1_type 0 337 1 204 216 0 39 chr6 7648537 7648588 -181630966 - L2 LINE L2 -4 3309 3261 2264 65 135 29 chr6 7648817 7648928 -181630626 - MER51B LTR ERV1 0 377 279 2403 67 0 51 chr6 7648928 7649243 -181630311 + AluY SINE Alu 1 299 -12 2264 65 135 29 chr6 7649243 7649472 -181630082 - MER51B LTR ERV1 -98 279 1 230 195 0 0 chr6 7649700 7649741 -181629813 + L2 LINE L2 3226 3266 -6 206 323 157 15 chr6 7649747 7650078 -181629476 - L2 LINE L2 -341 2973 2596 2318 103 0 22 chr6 7650153 7650472 -181629082 + AluSq SINE Alu 1 312 -1 1847 179 33 0 chr6 7650516 7650818 -181628736 - AluJo SINE Alu 0 312 1 2381 99 0 0 chr6 7651149 7651451 -181628103 - AluSg SINE Alu -7 303 2 21 0 0 0 chr6 7651569 7651590 -181627964 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 7651901 7651922 -181627632 + (CAG)n Simple_repeat Simple_repeat 1 21 0 2432 91 10 0 chr6 7652039 7652348 -181627206 - AluSx SINE Alu 0 312 1 1955 117 20 34 chr6 7652518 7652816 -181626738 - AluSx SINE Alu -18 294 1 2120 181 48 9 chr6 7652818 7653260 -181626294 + L1MB7 LINE L1 5706 6164 -20 272 307 50 55 chr6 7653406 7653644 -181625910 - L1MC4a LINE L1 -1753 6055 5819 1855 144 6 52 chr6 7653707 7653817 -181625737 - AluJo SINE Alu 0 312 198 4670 126 96 21 chr6 7653817 7654581 -181624973 + LTR1B LTR ERV1 4 824 -2 1855 144 6 52 chr6 7654581 7654797 -181624757 - AluJo SINE Alu -114 198 1 849 254 132 46 chr6 7654798 7655122 -181624432 - L1MC4a LINE L1 -2042 5766 5389 2279 114 3 0 chr6 7655122 7655428 -181624126 - AluSx SINE Alu -5 307 1 849 254 132 46 chr6 7655428 7655564 -181623990 - L1MC4a LINE L1 -2419 5389 5266 1839 146 28 24 chr6 7655696 7655984 -181623570 + AluJb SINE Alu 8 296 -16 2351 182 97 10 chr6 7656382 7656876 -181622678 + MLT1F1 LTR MaLR 20 556 -11 2281 94 3 0 chr6 7657007 7657295 -181622259 + AluSq SINE Alu 1 289 -24 1727 162 42 32 chr6 7657297 7657606 -181621948 - AluJb SINE Alu 0 312 1 7183 144 113 69 chr6 7657616 7659241 -181620313 + pTR5 LTR ERV1 742 2438 0 2573 196 86 18 chr6 7659279 7659850 -181619704 + LTR1B LTR ERV1 1 610 -216 2160 122 3 0 chr6 7659857 7660143 -181619411 + AluSq SINE Alu 7 293 -20 754 226 66 9 chr6 7660151 7660363 -181619191 - MER67B LTR ERV1 -437 224 1 1975 136 69 50 chr6 7660368 7660646 -181618908 - L1MB3 LINE L1 -69 6114 5843 2329 95 3 0 chr6 7660646 7660940 -181618614 + AluSg SINE Alu 2 296 -14 1975 136 69 50 chr6 7660940 7661090 -181618464 - L1MB3 LINE L1 -340 5843 5674 1710 141 94 0 chr6 7661090 7661366 -181618188 - AluJo SINE Alu -2 310 9 1975 136 69 50 chr6 7661366 7661400 -181618154 - L1MB3 LINE L1 -509 5674 5642 506 291 145 42 chr6 7661657 7661911 -181617643 + L2 LINE L2 2917 3220 -93 1305 182 164 33 chr6 7661911 7661959 -181617595 - MER93b LTR ERV1 0 373 333 2440 94 0 0 chr6 7661959 7662258 -181617296 + AluSc SINE Alu 1 299 -10 1305 182 164 33 chr6 7662258 7662539 -181617015 - MER93b LTR ERV1 -40 333 1 506 291 145 42 chr6 7662539 7662642 -181616912 + L2 LINE L2 3220 3311 -2 32 0 0 0 chr6 7663301 7663333 -181616221 + AT_rich Low_complexity Low_complexity 1 32 0 782 161 31 0 chr6 7663353 7663483 -181616071 + AluJb SINE Alu 179 312 0 629 153 6 123 chr6 7663483 7663631 -181615923 + L1MB3 LINE L1 5672 5799 -381 1811 140 16 23 chr6 7663631 7663766 -181615788 + AluJo SINE Alu 1 135 -177 2236 130 0 0 chr6 7663766 7664058 -181615496 + AluSx SINE Alu 1 292 -20 1811 140 16 23 chr6 7664058 7664230 -181615324 + AluJo SINE Alu 135 306 -6 629 153 6 123 chr6 7664230 7664251 -181615303 + L1MB3 LINE L1 5799 5821 -359 1007 143 15 35 chr6 7664252 7664455 -181615099 + L1MB3 LINE L1 5983 6181 -2 2168 107 19 29 chr6 7664455 7664770 -181614784 + L1MB3 LINE L1 5812 6131 -52 1981 119 40 0 chr6 7664770 7665048 -181614506 + AluSg SINE Alu 1 289 -21 2168 107 19 29 chr6 7665048 7665100 -181614454 + L1MB3 LINE L1 6131 6182 -1 305 209 86 29 chr6 7665512 7665617 -181613937 + LTR68 LTR ERV1 615 725 -15 371 284 30 12 chr6 7665681 7665763 -181613791 + L1P5 LINE L1 5276 5355 -796 2010 144 24 0 chr6 7665763 7666055 -181613499 + AluSx SINE Alu 1 299 -13 371 284 30 12 chr6 7666055 7666141 -181613413 + L1P5 LINE L1 5355 5447 -704 1313 179 0 60 chr6 7666230 7666515 -181613039 + L1MB8 LINE L1 5910 6177 -1 1215 113 88 29 chr6 7666523 7666763 -181612791 + L1MA9 LINE L1 6059 6312 0 1786 168 41 3 chr6 7666777 7667069 -181612485 + AluJb SINE Alu 2 304 -8 316 219 23 76 chr6 7667108 7667238 -181612316 + L1ME LINE L1 5455 5578 -543 392 270 103 17 chr6 7667293 7667467 -181612087 + L1ME LINE L1 5581 5769 -393 535 269 32 56 chr6 7667576 7667703 -181611851 + L1ME3A LINE L1 5706 5826 -344 2457 83 0 0 chr6 7667703 7668003 -181611551 + AluSx SINE Alu 1 300 -12 535 269 32 56 chr6 7668003 7668124 -181611430 + L1ME3A LINE L1 5826 5948 -222 465 232 168 0 chr6 7669401 7669553 -181610001 + MER5A DNA MER1_type 4 186 -3 1473 146 0 53 chr6 7670473 7670580 -181608974 - AluJo SINE Alu -76 236 125 2492 69 10 3 chr6 7670580 7670885 -181608669 - AluSx SINE Alu 0 312 6 1473 146 0 53 chr6 7670885 7671024 -181608530 - AluJo SINE Alu -187 125 3 346 234 76 21 chr6 7671078 7671223 -181608331 - L1ME4a LINE L1 -2 6119 5967 2283 96 3 3 chr6 7671617 7671908 -181607646 - AluSp SINE Alu -22 291 1 402 299 92 28 chr6 7672399 7672616 -181606938 + L2 LINE L2 1912 2142 -1172 3149 142 126 50 chr6 7672662 7673190 -181606364 - L1MB3 LINE L1 -14 6169 5683 1306 203 53 14 chr6 7673190 7673471 -181606083 - AluJo SINE Alu -20 292 1 1759 103 4 4 chr6 7673477 7673709 -181605845 - AluSc SINE Alu -16 293 62 3149 142 126 50 chr6 7673709 7673840 -181605714 - L1MB3 LINE L1 -504 5679 5452 1890 177 0 0 chr6 7673858 7674158 -181605396 - AluSx SINE Alu -12 300 1 2344 97 10 7 chr6 7674690 7674999 -181604555 + AluSx SINE Alu 1 310 -2 244 250 0 0 chr6 7675224 7675280 -181604274 + A-rich Low_complexity Low_complexity 1 56 0 318 285 112 43 chr6 7675425 7675857 -181603697 - L2 LINE L2 -211 3061 2585 366 250 0 43 chr6 7675928 7676020 -181603534 - L2 LINE L2 -24 3248 3161 770 157 8 0 chr6 7676046 7676167 -181603387 - MSTD LTR MaLR -2 394 273 2164 104 0 52 chr6 7676207 7676515 -181603039 + AluSx SINE Alu 1 292 -20 342 107 0 0 chr6 7676515 7676571 -181602983 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 930 150 7 0 chr6 7676597 7676737 -181602817 - AluJb SINE Alu -171 141 1 729 211 173 46 chr6 7676739 7676874 -181602680 - MSTD LTR MaLR -129 267 150 1615 173 0 22 chr6 7676874 7677151 -181602403 - AluJo SINE Alu -31 281 11 729 211 173 46 chr6 7677151 7677252 -181602302 - MSTD LTR MaLR -246 150 1 336 333 67 5 chr6 7677383 7677593 -181601961 - L2 LINE L2 -240 3032 2810 644 306 128 12 chr6 7677810 7678238 -181601316 - L2 LINE L2 -925 2389 1912 415 210 68 49 chr6 7679127 7679148 -181600406 + L1ME4a LINE L1 5957 5976 -145 2231 107 0 3 chr6 7679148 7679447 -181600107 + AluSc SINE Alu 1 298 -11 415 210 68 49 chr6 7679447 7679587 -181599967 + L1ME4a LINE L1 5976 6121 0 1690 165 0 0 chr6 7679639 7679905 -181599649 + AluJo SINE Alu 2 267 -45 2204 101 3 13 chr6 7680402 7680700 -181598854 - AluSq SINE Alu -18 295 1 2348 72 23 3 chr6 7681022 7681326 -181598228 + AluY SINE Alu 1 310 -1 240 35 0 0 chr6 7681864 7681893 -181597661 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2476 70 0 3 chr6 7681994 7682296 -181597258 - AluY SINE Alu -10 301 1 288 102 0 0 chr6 7682419 7682468 -181597086 + (A)n Simple_repeat Simple_repeat 1 49 0 1990 119 0 51 chr6 7684218 7684530 -181595024 + AluSx SINE Alu 1 296 -16 2407 230 51 24 chr6 7684786 7685525 -181594029 - L1M4 LINE L1 -1267 4879 4121 434 174 0 54 chr6 7685525 7685617 -181593937 - MER6 DNA MER2_type 0 865 58 1057 162 18 0 chr6 7685631 7685798 -181593756 - AluJo SINE Alu -142 170 1 515 167 29 29 chr6 7685803 7685905 -181593649 + MER6 DNA MER2_type 43 865 0 1457 202 0 73 chr6 7685905 7686002 -181593552 - L1M4 LINE L1 -2024 4122 4020 2185 148 42 0 chr6 7686002 7686380 -181593174 - L1MB3 LINE L1 -7 6176 5783 1457 202 0 73 chr6 7686380 7686654 -181592900 - L1M4 LINE L1 -2126 4020 3778 * 1955 186 20 18 chr6 7686650 7687049 -181592505 - L1MB3 LINE L1 -1091 5055 4656 230 250 16 0 chr6 7687110 7687154 -181592400 + MER5B DNA MER1_type 1 48 -130 2323 117 0 0 chr6 7687154 7687461 -181592093 - AluSx SINE Alu -5 307 1 230 250 16 0 chr6 7687461 7687480 -181592074 + MER5B DNA MER1_type 48 65 -113 2009 115 59 3 chr6 7687567 7687855 -181591699 - AluSx SINE Alu -8 304 1 2029 139 0 32 chr6 7687881 7688197 -181591357 - AluSx SINE Alu 0 312 7 338 272 44 0 chr6 7688540 7688654 -181590900 + MIR SINE MIR 119 237 -25 2121 98 39 3 chr6 7689226 7689511 -181590043 - AluSx SINE Alu -17 295 1 2034 144 0 10 chr6 7689613 7689919 -181589635 + AluJb SINE Alu 1 303 -9 1776 177 0 7 chr6 7690061 7690355 -181589199 - AluJo SINE Alu -20 292 1 201 367 69 25 chr6 7690502 7690777 -181588777 + L2 LINE L2 2928 3214 -58 1905 164 0 6 chr6 7691446 7691757 -181587797 + AluJo SINE Alu 1 309 -3 199 278 37 0 chr6 7691941 7691995 -181587559 - L2 LINE L2 -9 3263 3208 4753 175 36 14 chr6 7692755 7694293 -181585261 - L1MB4 LINE L1 0 6180 4611 257 253 13 13 chr6 7695422 7695501 -181584053 + L2 LINE L2 2571 2649 -665 2530 133 3 8 chr6 7695773 7696164 -181583390 + MLT1B LTR MaLR 2 567 0 314 284 45 8 chr6 7696220 7696354 -181583200 - L1MC4a LINE L1 -1878 5930 5792 2339 107 0 0 chr6 7696369 7696667 -181582887 - AluSx SINE Alu -14 298 1 211 275 44 33 chr6 7696809 7696900 -181582654 - MIR3 SINE MIR -28 180 89 219 224 69 0 chr6 7697095 7697153 -181582401 - MIR3 SINE MIR -35 173 112 231 114 227 0 chr6 7697181 7697225 -181582329 - L1MB5 LINE L1 -240 5934 5881 37 23 0 0 chr6 7697491 7697535 -181582019 + AT_rich Low_complexity Low_complexity 1 44 0 837 123 0 16 chr6 7697536 7697658 -181581896 - FLAM_C SINE Alu -22 121 2 244 244 52 43 chr6 7697908 7698023 -181581531 - L2 LINE L2 -190 3082 2967 22 0 0 0 chr6 7698406 7698428 -181581126 + AT_rich Low_complexity Low_complexity 1 22 0 1822 164 49 9 chr6 7698494 7698741 -181580813 + MER46B DNA MER2_type 14 154 -2577 16157 109 20 21 chr6 7698741 7701161 -181578393 - Tigger1 DNA MER2_type 0 2418 1 1822 164 49 9 chr6 7701161 7701242 -181578312 + MER46B DNA MER2_type 154 230 -6 360 43 0 0 chr6 7701242 7701288 -181578266 + (TG)n Simple_repeat Simple_repeat 1 46 0 1210 178 11 58 chr6 7701304 7701579 -181577975 - AluJo SINE Alu -16 296 35 1861 113 6 98 chr6 7702048 7702385 -181577169 + AluSp SINE Alu 1 306 -7 216 321 98 16 chr6 7702628 7702874 -181576680 - L2 LINE L2 -665 2649 2384 2369 97 0 0 chr6 7703205 7703504 -181576050 + AluSx SINE Alu 1 299 -13 2320 106 3 0 chr6 7703505 7703817 -181575737 + AluSp SINE Alu 1 313 0 1467 161 101 4 chr6 7705110 7705377 -181574177 - AluJo SINE Alu -13 299 7 2146 120 27 0 chr6 7705979 7706271 -181573283 + AluSx SINE Alu 1 300 -12 423 298 53 0 chr6 7706273 7706387 -181573167 + MIR3 SINE MIR 41 160 -48 541 224 36 73 chr6 7706387 7706579 -181572975 + MER63A DNA MER1_type 1 185 -25 3673 163 18 24 chr6 7708070 7708267 -181571287 + L1MB3 LINE L1 5476 5673 -510 2251 102 0 37 chr6 7708267 7708411 -181571143 + AluSx SINE Alu 1 149 -163 2209 113 3 0 chr6 7708411 7708702 -181570852 + AluSq SINE Alu 1 292 -21 2251 102 0 37 chr6 7708702 7708879 -181570675 + AluSx SINE Alu 149 310 -2 3673 163 18 24 chr6 7708879 7709393 -181570161 + L1MB3 LINE L1 5673 6183 0 1838 168 3 10 chr6 7709469 7709773 -181569781 - AluJb SINE Alu -10 302 1 2109 145 0 3 chr6 7709854 7710157 -181569397 + AluSx SINE Alu 9 310 -2 253 136 34 0 chr6 7710157 7710211 -181569343 + GA-rich Low_complexity Low_complexity 9 64 0 505 292 24 0 chr6 7710211 7710379 -181569175 + MIR SINE MIR 84 255 -7 899 146 0 0 chr6 7710379 7710509 -181569045 + FLAM_C SINE Alu 1 130 -3 1043 146 59 64 chr6 7711231 7711451 -181568103 + MER20 DNA MER1_type 1 219 0 2333 105 0 0 chr6 7711585 7711881 -181567673 + AluSx SINE Alu 2 297 -15 619 135 0 149 chr6 7711943 7712084 -181567470 - FLAM_C SINE Alu 0 143 24 730 264 28 14 chr6 7712575 7712791 -181566763 + MIR SINE MIR 42 260 -2 253 270 123 49 chr6 7713281 7713335 -181566219 + MER5B DNA MER1_type 1 50 -128 1372 169 126 8 chr6 7713335 7713596 -181565958 + AluJb SINE Alu 1 292 -20 253 270 123 49 chr6 7713596 7713704 -181565850 + MER5B DNA MER1_type 50 175 -3 200 267 33 0 chr6 7713720 7713780 -181565774 - MER5A DNA MER1_type 0 189 128 1979 150 3 3 chr6 7714350 7714644 -181564910 - AluJo SINE Alu -18 294 1 270 0 0 0 chr6 7715312 7715342 -181564212 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 181 62 42 chr6 7715361 7715505 -181564049 - L1ME4a LINE L1 -1 6120 5974 2534 146 29 77 chr6 7715857 7716336 -181563218 - LTR32 LTR ERVL 0 471 16 775 224 29 6 chr6 7716663 7716837 -181562717 + MER5B DNA MER1_type 1 178 0 533 274 5 48 chr6 7716845 7717031 -181562523 + MER5B DNA MER1_type 1 178 0 252 312 18 37 chr6 7717141 7717250 -181562304 + MIR3 SINE MIR 12 118 -90 180 0 0 0 chr6 7717344 7717364 -181562190 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2394 77 3 3 chr6 7719306 7719604 -181559950 - AluSq SINE Alu -15 298 1 1705 165 43 16 chr6 7720248 7720551 -181559003 - AluJb SINE Alu -1 311 1 843 147 0 52 chr6 7721593 7721729 -181557825 - AluJb SINE Alu -181 131 3 1887 148 10 7 chr6 7722490 7722787 -181556767 + AluJo SINE Alu 3 300 -12 714 207 59 68 chr6 7722810 7722997 -181556557 - L1ME3A LINE L1 -5 6165 5979 2162 141 3 0 chr6 7722997 7723302 -181556252 - AluSx SINE Alu -6 306 1 714 207 59 68 chr6 7723302 7723351 -181556203 - L1ME3A LINE L1 -191 5979 5931 879 150 15 0 chr6 7724123 7724256 -181555298 - FAM SINE Alu -43 142 8 273 57 0 0 chr6 7724314 7724349 -181555205 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2015 123 36 26 chr6 7725041 7725350 -181554204 + AluSx SINE Alu 1 312 0 2414 69 0 7 chr6 7726309 7726600 -181552954 - AluSc SINE Alu -20 289 1 183 129 0 0 chr6 7726735 7726766 -181552788 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 412 314 24 39 chr6 7726835 7727042 -181552512 + MIR SINE MIR 59 262 0 262 307 71 55 chr6 7727038 7727165 -181552389 + L2 LINE L2 3139 3267 -5 * 2217 121 0 19 chr6 7727690 7728004 -181551550 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr6 7728133 7728166 -181551388 + (T)n Simple_repeat Simple_repeat 1 33 0 598 292 56 64 chr6 7729139 7729499 -181550055 + L1ME3 LINE L1 5526 5882 -280 1956 148 23 0 chr6 7729503 7729808 -181549746 + AluSx SINE Alu 1 312 0 363 167 211 0 chr6 7730496 7730586 -181548968 - L1ME4a LINE L1 -40 6081 5973 299 250 180 57 chr6 7730649 7730877 -181548677 + MIR SINE MIR 7 262 0 1820 254 66 21 chr6 7731355 7731951 -181547603 + HAL1 LINE L1 1464 2089 -418 2123 99 3 78 chr6 7731951 7732285 -181547269 + AluSq SINE Alu 1 309 -4 2649 138 12 39 chr6 7732315 7732637 -181546917 + L1MB3 LINE L1 5700 6006 -177 1620 151 100 0 chr6 7732637 7732916 -181546638 - AluJb SINE Alu -5 307 1 2649 138 12 39 chr6 7732916 7733086 -181546468 + L1MB3 LINE L1 6006 6179 -4 700 161 110 0 chr6 7734559 7734677 -181544877 + FLAM_C SINE Alu 1 131 -2 380 264 125 50 chr6 7734736 7734827 -181544727 + L1ME4a LINE L1 5796 5879 -242 2456 92 0 0 chr6 7734827 7735133 -181544421 + AluSx SINE Alu 1 306 -6 380 264 125 50 chr6 7735133 7735344 -181544210 + L1ME4a LINE L1 5879 6121 0 265 106 0 45 chr6 7735567 7735633 -181543921 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 1613 163 64 0 chr6 7735736 7736019 -181543535 - AluJb SINE Alu -11 301 1 225 0 0 0 chr6 7736410 7736435 -181543119 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 467 159 57 0 chr6 7736519 7736607 -181542947 + FLAM_A SINE Alu 48 140 -2 1645 197 10 3 chr6 7736695 7736994 -181542560 + AluJo SINE Alu 1 301 -11 1721 150 34 24 chr6 7737969 7738263 -181541291 - AluJb SINE Alu -15 297 1 1843 156 0 3 chr6 7738827 7739133 -181540421 + AluJb SINE Alu 1 305 0 255 103 0 0 chr6 7740071 7740110 -181539444 + (TG)n Simple_repeat Simple_repeat 2 40 0 2197 128 0 0 chr6 7740572 7740870 -181538684 - AluSx SINE Alu -8 304 7 267 286 29 29 chr6 7741115 7741181 -181538373 + Tigger8 DNA MER2_type 153 221 -445 2517 116 3 6 chr6 7741181 7741543 -181538011 + MER46B DNA MER2_type 1 236 0 267 286 29 29 chr6 7741543 7741581 -181537973 + Tigger8 DNA MER2_type 220 257 -409 21 0 0 0 chr6 7742857 7742878 -181536676 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 7744145 7744173 -181535381 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 7744827 7744849 -181534705 + (T)n Simple_repeat Simple_repeat 1 22 0 195 129 0 0 chr6 7745907 7745938 -181533616 + (T)n Simple_repeat Simple_repeat 1 31 0 21 57 0 0 chr6 7747804 7747839 -181531715 + AT_rich Low_complexity Low_complexity 1 35 0 394 227 31 10 chr6 7747932 7748029 -181531525 - MIR SINE MIR -116 146 48 1770 161 0 31 chr6 7748855 7749170 -181530384 - AluJo SINE Alu 0 306 1 2309 84 13 0 chr6 7749422 7749721 -181529833 + AluSg SINE Alu 2 304 -6 2501 61 3 0 chr6 7750586 7750882 -181528672 - AluSp SINE Alu -16 297 1 250 274 0 0 chr6 7751184 7751235 -181528319 + polypurine Low_complexity Low_complexity 3 53 0 1730 147 0 55 chr6 7751476 7751788 -181527766 - AluJb SINE Alu -17 295 1 22 0 0 0 chr6 7751796 7751818 -181527736 + AT_rich Low_complexity Low_complexity 1 22 0 2193 108 0 10 chr6 7752778 7753075 -181526479 + AluSx SINE Alu 1 294 -18 2331 98 0 23 chr6 7753711 7754018 -181525536 + AluSx SINE Alu 5 304 -8 446 151 54 0 chr6 7754465 7754558 -181524996 - L1MD3 LINE L1 0 7995 7898 744 154 0 16 chr6 7754570 7754693 -181524861 - FLAM_C SINE Alu -12 131 11 396 0 0 0 chr6 7755516 7755560 -181523994 + (CA)n Simple_repeat Simple_repeat 2 45 0 1640 181 3 37 chr6 7756090 7756388 -181523166 - AluJo SINE Alu -24 288 1 905 201 81 54 chr6 7756620 7756879 -181522675 + L1MC4 LINE L1 7655 7920 -122 635 186 55 125 chr6 7756876 7757121 -181522433 + L1MC4 LINE L1 7827 8042 0 * 597 231 36 34 chr6 7758621 7758798 -181520756 - L1MD3 LINE L1 0 7983 6191 2419 109 0 0 chr6 7758831 7759143 -181520411 + AluSx SINE Alu 1 312 0 1677 156 34 30 chr6 7759941 7760236 -181519318 - AluJb SINE Alu -5 307 12 2128 123 0 7 chr6 7762384 7762685 -181516869 - AluSg SINE Alu -11 299 1 983 84 0 63 chr6 7765389 7765531 -181514023 - AluSq/x SINE Alu -179 133 1 1721 110 23 0 chr6 7765991 7766254 -181513300 + L1MA4 LINE L1 6027 6295 -5 2245 84 3 17 chr6 7766296 7766594 -181512960 + AluSx SINE Alu 1 294 -18 2223 87 3 19 chr6 7767120 7767431 -181512123 + L1PA13 LINE L1 5858 6163 0 1096 217 18 5 chr6 7768051 7768272 -181511282 - MER58A DNA MER1_type 0 224 1 2330 102 3 0 chr6 7770986 7771280 -181508274 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr6 7772610 7772631 -181506923 + AT_rich Low_complexity Low_complexity 1 21 0 194 281 16 31 chr6 7773872 7773936 -181505618 - MIR3 SINE MIR -136 72 10 1533 129 141 0 chr6 7774168 7774416 -181505138 - MER7A DNA MER2_type -6 340 60 755 156 170 22 chr6 7774417 7774552 -181505002 + FRAM SINE Alu 1 155 -11 267 173 0 0 chr6 7774552 7774604 -181504950 + (TG)n Simple_repeat Simple_repeat 1 52 0 365 192 14 27 chr6 7774604 7774677 -181504877 - MER7A DNA MER2_type -275 73 2 2109 200 39 33 chr6 7774678 7774730 -181504824 + L1MA9 LINE L1 5782 5832 -480 2512 73 0 3 chr6 7774730 7775033 -181504521 + AluSg SINE Alu 1 302 -8 2109 200 39 33 chr6 7775033 7775470 -181504084 + L1MA9 LINE L1 5832 6274 -38 372 200 118 0 chr6 7776425 7776510 -181503044 + MER103 DNA DNA 4 98 -68 1628 164 52 44 chr6 7777323 7777689 -181501865 - L1MB8 LINE L1 -225 5953 5585 234 0 0 0 chr6 7778755 7778781 -181500773 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2046 107 4 0 chr6 7778785 7779055 -181500499 - AluSp SINE Alu -36 277 7 219 295 0 26 chr6 7779349 7779427 -181500127 + CT-rich Low_complexity Low_complexity 5 80 0 339 349 16 8 chr6 7780455 7780584 -181498970 - MIR SINE MIR -62 146 17 252 0 0 0 chr6 7783573 7783601 -181495953 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 135 56 0 chr6 7783601 7783690 -181495864 + (TA)n Simple_repeat Simple_repeat 2 95 0 647 204 74 32 chr6 7789092 7789394 -181490160 - MLT1B LTR MaLR 0 390 1 2408 88 0 0 chr6 7789763 7790060 -181489494 + AluSg SINE Alu 1 297 -13 1964 257 137 44 chr6 7790357 7791442 -181488112 + L1MC4 LINE L1 6831 8016 -26 2213 106 0 0 chr6 7792129 7792430 -181487124 + AluJb SINE Alu 1 301 -11 553 213 81 0 chr6 7793132 7793268 -181486286 - MIR SINE MIR -59 203 57 329 297 82 61 chr6 7793549 7793898 -181485656 - L2 LINE L2 -218 3054 2694 * 859 239 5 50 chr6 7793895 7794117 -181485437 - MIR SINE MIR 0 262 51 567 289 186 48 chr6 7794165 7795014 -181484540 - L2 LINE L2 -650 2664 1699 22 0 0 0 chr6 7795109 7795131 -181484423 + AT_rich Low_complexity Low_complexity 1 22 0 526 288 108 9 chr6 7795919 7796131 -181483423 + MIR SINE MIR 1 233 -29 22 0 0 0 chr6 7796808 7796830 -181482724 + AT_rich Low_complexity Low_complexity 1 22 0 314 234 13 26 chr6 7796837 7796914 -181482640 + Tigger5 DNA MER2_type 1 76 -2247 540 103 13 13 chr6 7796963 7797041 -181482513 + Tigger5 DNA MER2_type 2245 2322 -1 2189 108 0 7 chr6 7797415 7797710 -181481844 + AluSx SINE Alu 1 293 -19 359 256 0 0 chr6 7798334 7798412 -181481142 - MIR3 SINE MIR -6 202 125 275 252 98 26 chr6 7798500 7798654 -181480900 - MIR SINE MIR -50 212 45 2251 86 3 10 chr6 7799299 7799600 -181479954 - AluY SINE Alu -12 299 1 2313 107 0 0 chr6 7799646 7799945 -181479609 + AluSx SINE Alu 1 299 -13 378 289 23 47 chr6 7800489 7800617 -181478937 + MIR3 SINE MIR 50 174 -34 819 126 80 7 chr6 7800732 7800883 -181478671 + L1MB3 LINE L1 6019 6180 -3 1835 162 8 64 chr6 7803090 7803284 -181476270 - MER2 DNA MER2_type -1 344 178 2011 156 3 0 chr6 7803284 7803586 -181475968 - AluSx SINE Alu -9 303 1 1835 162 8 64 chr6 7803586 7803749 -181475805 - MER2 DNA MER2_type -167 178 7 281 320 76 41 chr6 7804417 7804614 -181474940 + MIR SINE MIR 3 206 -56 273 141 84 42 chr6 7805370 7805441 -181474113 - L1MC5 LINE L1 -51 7910 7837 659 208 50 134 chr6 7806306 7806678 -181472876 - L1MD3 LINE L1 -1 8035 7709 1033 55 78 0 chr6 7807164 7807292 -181472262 - MER85 DNA T2_type -1 138 1 229 226 19 0 chr6 7807946 7807999 -181471555 + CT-rich Low_complexity Low_complexity 4 57 0 274 303 140 28 chr6 7808154 7808332 -181471222 + L2 LINE L2 2286 2483 -831 1858 163 3 0 chr6 7808470 7808758 -181470796 + AluJb SINE Alu 1 289 -23 459 320 105 31 chr6 7808876 7809170 -181470384 + L2 LINE L2 2871 3186 -86 2285 93 10 3 chr6 7809708 7810018 -181469536 + AluSq SINE Alu 1 312 -1 280 331 54 6 chr6 7810758 7810924 -181468630 + L1ME2 LINE L1 5734 5907 -257 21 0 0 0 chr6 7811114 7811135 -181468419 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 33 26 chr6 7811179 7811196 -181468358 - L1MA10 LINE L1 -1 6333 6317 968 239 95 20 chr6 7811196 7811544 -181468010 - L1ME1 LINE L1 -8 6158 5785 265 209 30 15 chr6 7811879 7811946 -181467608 - MER116 DNA Mariner -6 74 7 206 306 118 0 chr6 7812257 7812342 -181467212 + L2 LINE L2 3126 3220 -52 1394 162 4 9 chr6 7812512 7812741 -181466813 - AluJo SINE Alu -56 256 29 640 139 165 26 chr6 7812790 7812905 -181466649 - FLAM_C SINE Alu -2 131 1 2006 139 27 0 chr6 7814590 7814891 -181464663 + AluJo SINE Alu 1 309 -3 2147 138 55 17 chr6 7814966 7815314 -181464240 + MER46B DNA MER2_type 1 236 0 3469 213 36 46 chr6 7815376 7815929 -181463625 - MER21B LTR ERV1 -31 832 290 2177 112 7 0 chr6 7815929 7816223 -181463331 + AluSx SINE Alu 1 296 -16 3469 213 36 46 chr6 7816223 7816510 -181463044 - MER21B LTR ERV1 -573 290 1 223 322 50 41 chr6 7816517 7816638 -181462916 + L2 LINE L2 2574 2695 -619 1141 88 0 0 chr6 7816799 7816946 -181462608 + AluSg/x SINE Alu 153 299 -13 2382 295 188 22 chr6 7817178 7817799 -181461755 + L2 LINE L2 1500 2017 -1296 2306 78 14 0 chr6 7817799 7818095 -181461459 - AluSq SINE Alu -13 300 1 2382 295 188 22 chr6 7818095 7819029 -181460525 + L2 LINE L2 2017 3313 0 212 261 39 100 chr6 7820340 7820470 -181459084 + L2 LINE L2 1333 1454 -1860 284 339 125 0 chr6 7820515 7820707 -181458847 - MIR SINE MIR -16 246 31 181 300 0 0 chr6 7820709 7820769 -181458785 + L2 LINE L2 3207 3266 -6 906 105 8 0 chr6 7821175 7821299 -181458255 + AluJb SINE Alu 7 131 -181 1566 173 0 91 chr6 7821477 7821835 -181457719 - MLT2D LTR ERVL 0 414 94 462 252 9 0 chr6 7822433 7822544 -181457010 - MLT2D LTR ERVL -302 112 1 248 26 26 51 chr6 7822750 7822789 -181456765 - MER69 DNA AcHobo -42 2484 2447 1511 191 0 29 chr6 7822793 7823066 -181456488 + AluJo SINE Alu 3 267 -45 914 270 9 0 chr6 7823420 7823642 -181455912 - MER58A DNA MER1_type 0 224 1 2100 122 3 0 chr6 7824681 7824985 -181454569 + AluSx SINE Alu 1 305 -7 331 320 36 77 chr6 7825873 7826067 -181453487 + L1ME LINE L1 5268 5453 -709 2569 121 33 51 chr6 7826195 7826648 -181452906 + MER65A LTR ERV1 1 445 0 735 300 58 8 chr6 7826654 7826897 -181452657 - MIR SINE MIR -4 258 4 287 146 18 0 chr6 7827259 7827314 -181452240 + T-rich Low_complexity Low_complexity 4 59 0 1734 166 13 7 chr6 7827316 7827618 -181451936 - AluSx SINE Alu -8 304 1 1946 138 0 16 chr6 7828037 7828355 -181451199 - AluSq SINE Alu 0 313 1 228 341 0 24 chr6 7828364 7828446 -181451108 + LTR67 LTR ERVL 98 177 -380 * 820 272 46 79 chr6 7828382 7828617 -181450937 + MLT1J LTR MaLR 110 326 -185 1404 217 117 42 chr6 7828617 7828684 -181450870 - MLT1C LTR MaLR -4 463 402 1505 66 0 0 chr6 7828684 7828867 -181450687 + AluY SINE Alu 1 183 -128 1404 217 117 42 chr6 7828867 7829228 -181450326 - MLT1C LTR MaLR -65 402 3 820 272 46 79 chr6 7829228 7829408 -181450146 + MLT1J LTR MaLR 326 511 0 473 0 0 17 chr6 7829412 7829470 -181450084 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2328 76 0 0 chr6 7829639 7829943 -181449611 + AluY SINE Alu 1 304 -7 230 281 0 16 chr6 7830096 7830160 -181449394 + GA-rich Low_complexity Low_complexity 1 63 0 1206 167 9 14 chr6 7831617 7831827 -181447727 + MLT1A1 LTR MaLR 18 226 -139 357 194 16 0 chr6 7831817 7831879 -181447675 - MER115 DNA AcHobo -467 226 164 * 465 276 0 98 chr6 7882385 7882559 -181396995 + MER5B DNA MER1_type 1 157 -21 1387 60 0 0 chr6 7882710 7882876 -181396678 - AluSg/x SINE Alu -11 299 134 957 248 16 33 chr6 7883072 7883378 -181396176 + L1MC4 LINE L1 6788 7088 -954 375 231 103 17 chr6 7883407 7883524 -181396030 + L1MC5 LINE L1 6982 7108 -853 299 181 162 29 chr6 7883587 7883692 -181395862 + L1MC5 LINE L1 7109 7227 -734 694 264 184 48 chr6 7883760 7884070 -181395484 - MLT1H LTR MaLR -173 394 43 331 269 195 62 chr6 7884106 7884363 -181395191 - MLT1H-int LTR MaLR -7 1364 1074 1162 265 31 55 chr6 7884658 7885140 -181394414 + L1MC5 LINE L1 7304 7771 -190 1718 182 0 7 chr6 7885140 7885437 -181394117 + AluJb SINE Alu 1 295 -17 1162 265 31 55 chr6 7885437 7885536 -181394018 + L1MC5 LINE L1 7771 7871 -90 847 218 0 0 chr6 7885575 7885722 -181393832 - FRAM SINE Alu -30 146 1 2272 116 3 0 chr6 7886107 7886418 -181393136 - AluSp SINE Alu 0 313 2 1203 273 104 67 chr6 7886535 7886670 -181392884 - HAL1 LINE L1 -53 2454 2325 2096 117 3 22 chr6 7886670 7886986 -181392568 + AluSx SINE Alu 1 310 -2 1203 273 104 67 chr6 7886986 7887609 -181391945 - HAL1 LINE L1 -182 2325 1668 1013 214 117 16 chr6 7887682 7887999 -181391555 - LTR16A LTR ERVL -36 414 66 1394 331 58 36 chr6 7888404 7889309 -181390245 - HERV16 LTR ERVL -697 5067 4144 759 293 21 45 chr6 7889304 7889486 -181390068 - HERV16 LTR ERVL -2225 2771 2586 * 2874 122 7 23 chr6 7889486 7889920 -181389634 - MSTC LTR MaLR 0 428 2 759 293 21 45 chr6 7889920 7889936 -181389618 - HERV16 LTR ERVL -2410 2586 2571 2196 120 13 0 chr6 7889936 7890237 -181389317 - AluSx SINE Alu -7 305 1 759 293 21 45 chr6 7890237 7890327 -181389227 - HERV16 LTR ERVL -2425 2571 2489 2301 276 79 22 chr6 7890332 7892053 -181387501 - HERV16 LTR ERVL -2665 2331 401 3251 183 13 7 chr6 7892075 7892686 -181386868 - L1MB8 LINE L1 -2 6176 5562 6071 178 17 12 chr6 7892691 7893834 -181385720 + L1PA16 LINE L1 4040 5196 -970 2030 132 17 7 chr6 7893834 7894129 -181385425 + AluSq SINE Alu 1 298 -15 6071 178 17 12 chr6 7894129 7894558 -181384996 + L1PA16 LINE L1 5196 5621 -545 3840 89 10 43 chr6 7894582 7894972 -181384582 + L1PA16 LINE L1 5598 5964 -202 1839 181 3 0 chr6 7894972 7895275 -181384279 + AluJo SINE Alu 1 304 -8 3840 89 10 43 chr6 7895275 7895471 -181384083 + L1PA16 LINE L1 5964 6165 -1 2224 152 38 47 chr6 7895472 7896165 -181383389 - L1MB8 LINE L1 -606 5572 4871 282 230 54 0 chr6 7896287 7896361 -181383193 + L1P LINE L1 3703 3780 -2366 1384 86 50 10 chr6 7896450 7896648 -181382906 - AluSg/x SINE Alu -16 294 89 799 157 0 15 chr6 7896662 7896796 -181382758 - FLAM_C SINE Alu -1 132 1 299 211 26 0 chr6 7896952 7897028 -181382526 + L1M4 LINE L1 5017 5094 -1052 2001 160 31 0 chr6 7897045 7897364 -181382190 - MER7A DNA MER2_type -19 327 1 506 289 11 42 chr6 7897935 7898125 -181381429 - HERV16 LTR ERVL -4803 193 10 456 271 30 15 chr6 7898368 7898501 -181381053 + MLT1L LTR MaLR 128 262 -353 286 296 46 9 chr6 7898635 7898743 -181380811 + MLT1L LTR MaLR 496 607 -8 1409 110 8 55 chr6 7899278 7899515 -181380039 + MLT1B LTR MaLR 4 229 -161 1743 176 47 52 chr6 7899524 7899911 -181379643 - MLT1B LTR MaLR 0 390 6 833 148 0 15 chr6 7899912 7900047 -181379507 + AluJo SINE Alu 1 133 -169 1111 142 11 11 chr6 7900096 7900286 -181379268 + AluJo SINE Alu 122 311 -1 984 189 28 18 chr6 7900355 7900572 -181378982 - MER20 DNA MER1_type 0 219 1 1946 165 30 12 chr6 7901075 7901482 -181378072 - MLT1B LTR MaLR -34 433 5 227 306 47 24 chr6 7903393 7903478 -181376076 - MIR SINE MIR -147 115 29 369 253 205 18 chr6 7904032 7904198 -181375356 + MIR SINE MIR 50 246 -16 371 259 94 55 chr6 7904418 7904619 -181374935 - L2 LINE L2 -17 3296 3088 1086 257 105 34 chr6 7904696 7905268 -181374286 + MLT2F LTR ERVL 2 651 -12 2368 104 0 0 chr6 7905270 7905568 -181373986 - AluSq SINE Alu -15 298 1 346 274 170 72 chr6 7905996 7906397 -181373157 - MLT1J2 LTR MaLR -9 441 2 2372 108 0 6 chr6 7906679 7906993 -181372561 - AluSx SINE Alu 0 312 1 2317 171 23 0 chr6 7907624 7907976 -181371578 + MLT2D LTR ERVL 1 364 -50 823 85 15 0 chr6 7907976 7908106 -181371448 + (TCTA)n Simple_repeat Simple_repeat 3 134 0 2317 171 23 0 chr6 7908106 7908146 -181371408 + MLT2D LTR ERVL 364 402 -12 2310 115 0 0 chr6 7909508 7909813 -181369741 - AluSx SINE Alu -7 305 1 457 261 48 30 chr6 7910003 7910168 -181369386 + MIR3 SINE MIR 38 205 -3 241 326 7 43 chr6 7910240 7910378 -181369176 - L2 LINE L2 -7 3265 3133 3695 143 50 16 chr6 7910909 7911523 -181368031 - MER41B LTR ERV1 0 635 1 180 143 0 0 chr6 7911759 7911801 -181367753 + (T)n Simple_repeat Simple_repeat 1 42 0 2095 104 21 7 chr6 7913711 7913998 -181365556 + AluSq SINE Alu 1 291 -22 185 0 0 39 chr6 7914009 7914035 -181365519 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 837 174 43 31 chr6 7914283 7914444 -181365110 + FRAM SINE Alu 1 163 -3 248 310 106 21 chr6 7914562 7914704 -181364850 + MIR3 SINE MIR 32 185 -23 190 242 97 16 chr6 7914993 7915055 -181364499 + MIR SINE MIR 58 124 -84 1403 145 5 5 chr6 7915336 7915550 -181364004 + AluJo SINE Alu 86 299 -13 1165 136 44 29 chr6 7916332 7916538 -181363016 + MER3 DNA MER1_type 1 209 0 675 190 8 0 chr6 7917371 7917492 -181362062 + FLAM_C SINE Alu 1 122 -11 21 0 0 0 chr6 7917492 7917513 -181362041 + AT_rich Low_complexity Low_complexity 1 21 0 2842 230 56 6 chr6 7918344 7919019 -181360535 + L1ME1 LINE L1 5441 6149 -17 808 176 150 31 chr6 7919147 7919254 -181360300 - L1ME3A LINE L1 -13 6157 6064 1890 167 6 3 chr6 7919254 7919565 -181359989 + AluJb SINE Alu 1 312 0 808 176 150 31 chr6 7919565 7919684 -181359870 - L1ME3A LINE L1 -106 6064 5904 331 309 133 24 chr6 7920966 7921131 -181358423 - MIR3 SINE MIR -5 203 21 284 211 18 0 chr6 7921728 7921785 -181357769 - MLT1K LTR MaLR -20 568 511 250 282 0 68 chr6 7921785 7921831 -181357723 - LTR67 LTR ERVL -18 539 444 183 235 0 0 chr6 7921898 7921949 -181357605 + C-rich Low_complexity Low_complexity 3 53 0 2305 98 3 13 chr6 7921983 7922299 -181357255 - AluSq SINE Alu 0 313 1 375 23 0 0 chr6 7923381 7923425 -181356129 + (TAA)n Simple_repeat Simple_repeat 2 45 0 327 338 52 0 chr6 7923710 7923846 -181355708 - MIR SINE MIR -73 189 47 367 322 90 6 chr6 7924011 7924188 -181355366 - MIR SINE MIR -25 237 46 1336 158 4 58 chr6 7924293 7924553 -181355001 - AluJo SINE Alu -15 297 52 205 371 57 9 chr6 7924571 7924676 -181354878 - L2 LINE L2 -4 3268 3159 849 239 36 54 chr6 7924829 7925109 -181354445 - ORSL DNA AcHobo 0 275 1 339 106 0 0 chr6 7925275 7925322 -181354232 - AluJb SINE Alu -4 298 252 616 174 9 17 chr6 7925339 7925454 -181354100 + ORSL DNA AcHobo 151 264 -11 1737 144 0 4 chr6 7925458 7925714 -181353840 - AluJb SINE Alu -57 255 1 363 158 29 14 chr6 7925986 7926125 -181353429 + (TA)n Simple_repeat Simple_repeat 1 141 0 681 200 0 24 chr6 7926162 7926287 -181353267 - AluJb SINE Alu -184 128 7 2273 116 3 0 chr6 7927501 7927804 -181351750 - AluSx SINE Alu -8 304 1 193 305 203 34 chr6 7927929 7928047 -181351507 + L2 LINE L2 3133 3270 -2 26 0 0 0 chr6 7929469 7929495 -181350059 + AT_rich Low_complexity Low_complexity 1 26 0 2302 139 21 10 chr6 7929664 7929738 -181349816 + LTR51 LTR ERV1 1 73 -598 2231 115 3 0 chr6 7929738 7930042 -181349512 + AluSg SINE Alu 1 305 -5 2302 139 21 10 chr6 7930042 7930587 -181348967 + LTR51 LTR ERV1 73 671 0 2366 108 0 0 chr6 7930724 7931031 -181348523 + AluSx SINE Alu 1 307 -5 371 269 23 0 chr6 7931415 7931519 -181348035 - MIR SINE MIR -57 151 45 985 203 98 51 chr6 7931991 7932065 -181347489 + L1ME3A LINE L1 5862 5931 -239 2089 150 129 5 chr6 7932065 7932446 -181347108 - MSTA LTR MaLR 0 428 1 985 203 98 51 chr6 7932446 7932666 -181346888 + L1ME3A LINE L1 5931 6170 0 281 247 0 67 chr6 7933986 7934075 -181345479 - MIR SINE MIR -71 191 109 300 291 78 28 chr6 7934542 7934683 -181344871 - L2 LINE L2 -203 3069 2922 1624 196 27 46 chr6 7935083 7935408 -181344146 + MLT1A1 LTR MaLR 5 324 -41 2331 84 0 47 chr6 7935408 7935729 -181343825 - AluSq SINE Alu -7 306 1 1624 196 27 46 chr6 7935729 7935771 -181343783 + MLT1A1 LTR MaLR 324 365 0 1852 154 0 29 chr6 7935817 7936146 -181343408 - AluJo SINE Alu 0 312 1 217 340 212 17 chr6 7937179 7938061 -181341493 + L2 LINE L2 1710 2763 -551 206 299 26 0 chr6 7938169 7938246 -181341308 + L2 LINE L2 2894 2972 -300 1210 102 81 106 chr6 7938875 7939029 -181340525 - MER30 DNA MER1_type 0 230 83 2501 57 3 0 chr6 7939029 7939326 -181340228 - AluY SINE Alu -13 298 1 1210 102 81 106 chr6 7939326 7939407 -181340147 - MER30 DNA MER1_type -147 83 1 1803 185 22 27 chr6 7940241 7940608 -181338946 - MLT1A1 LTR MaLR 0 365 1 1995 268 50 23 chr6 7941401 7941964 -181337590 - MLT1E LTR MaLR 0 593 16 1523 317 125 29 chr6 7942109 7943369 -181336185 + L2 LINE L2 1618 2996 -276 373 248 108 8 chr6 7943397 7943526 -181336028 + L2 LINE L2 3158 3299 -14 261 271 60 53 chr6 7943723 7943856 -181335698 + L2 LINE L2 3132 3265 -7 362 171 13 13 chr6 7944876 7944952 -181334602 - L2 LINE L2 0 3313 3238 2004 179 6 0 chr6 7945434 7945791 -181333763 + L1MDb LINE L1 793 1151 -5392 5730 136 42 2 chr6 7945791 7946695 -181332859 + L1MC1 LINE L1 5394 6333 0 3845 204 61 75 chr6 7946688 7946887 -181332667 + L1MDb LINE L1 1110 1310 -5230 * 1242 63 0 0 chr6 7946887 7947045 -181332509 + L1PA3 LINE L1 5998 6155 0 3845 204 61 75 chr6 7947045 7947747 -181331807 + L1MDb LINE L1 1310 2021 -4519 2947 6 0 0 chr6 7947747 7948058 -181331496 + AluY SINE Alu 1 311 0 3845 204 61 75 chr6 7948058 7948222 -181331332 + L1MDb LINE L1 2021 2186 -4354 2093 138 0 3 chr6 7948222 7948518 -181331036 + AluJb SINE Alu 1 295 -17 3845 204 61 75 chr6 7948518 7948816 -181330738 + L1MDb LINE L1 2186 2455 -4085 2229 116 3 0 chr6 7949055 7949349 -181330205 - AluSq SINE Alu -18 295 1 1014 197 56 16 chr6 7949431 7949680 -181329874 - L1MC3 LINE L1 0 7785 7527 1880 79 0 0 chr6 7949709 7949938 -181329616 + AluY SINE Alu 82 310 -1 715 281 32 32 chr6 7950324 7950570 -181328984 + L2 LINE L2 2518 2763 -551 988 238 71 29 chr6 7950610 7950921 -181328633 - L1ME3A LINE L1 -5 6165 5842 767 269 88 30 chr6 7951007 7951312 -181328242 + L2 LINE L2 2818 3140 -173 1220 243 40 6 chr6 7951322 7951641 -181327913 - MLT1E2 LTR MaLR 0 626 271 321 175 225 33 chr6 7951697 7951817 -181327737 + L2 LINE L2 3171 3313 0 1727 120 7 80 chr6 7952863 7953162 -181326392 - AluJb SINE Alu -12 300 24 189 107 0 0 chr6 7954507 7954535 -181325019 + (TG)n Simple_repeat Simple_repeat 2 29 0 2360 133 17 0 chr6 7954569 7954923 -181324631 - MER46B DNA MER2_type 0 236 2 22 0 0 0 chr6 7956753 7956775 -181322779 + GC_rich Low_complexity Low_complexity 1 22 0 185 160 0 20 chr6 7957620 7957670 -181321884 + (CCG)n Simple_repeat Simple_repeat 1 49 0 222 62 0 0 chr6 7957807 7957839 -181321715 + (CAG)n Simple_repeat Simple_repeat 3 34 0 26 88 0 0 chr6 7958331 7958399 -181321155 + GC_rich Low_complexity Low_complexity 1 68 0 207 333 0 0 chr6 7959808 7959871 -181319683 + C-rich Low_complexity Low_complexity 1 63 0 433 268 28 56 chr6 7960019 7960198 -181319356 + MER5B DNA MER1_type 5 178 0 363 166 78 181 chr6 7960262 7960401 -181319153 + MER5B DNA MER1_type 6 121 -57 592 212 0 38 chr6 7960401 7960533 -181319021 - FLAM_A SINE Alu -6 127 1 363 166 78 181 chr6 7960533 7960586 -181318968 + MER5B DNA MER1_type 121 178 0 389 308 69 47 chr6 7961842 7962118 -181317436 + L2 LINE L2 3005 3286 -27 1996 128 0 29 chr6 7963428 7963734 -181315820 - AluSx SINE Alu -15 297 1 184 220 40 0 chr6 7964793 7964843 -181314711 - MIR3 SINE MIR -4 204 153 1504 161 28 46 chr6 7966101 7966425 -181313129 - L1MC1 LINE L1 0 6333 6016 2212 106 7 0 chr6 7967434 7967726 -181311828 + AluSx SINE Alu 1 294 -18 203 267 0 0 chr6 7968145 7968190 -181311364 + CT-rich Low_complexity Low_complexity 1 45 0 209 217 0 0 chr6 7968471 7968517 -181311037 + T-rich Low_complexity Low_complexity 1 46 0 395 281 131 11 chr6 7968887 7969147 -181310407 + LTR33A LTR ERVL 231 521 -2 227 303 0 0 chr6 7969268 7969344 -181310210 - L1ME1 LINE L1 -45 6121 6046 473 248 115 49 chr6 7970860 7971146 -181308408 - MER5C DNA MER1_type 0 324 20 187 206 330 10 chr6 7971139 7971236 -181308318 - MER5A DNA MER1_type -46 143 16 * 213 39 0 0 chr6 7971812 7971838 -181307716 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1735 149 14 11 chr6 7971844 7972125 -181307429 - AluJo SINE Alu -30 282 1 951 127 0 0 chr6 7972135 7972261 -181307293 - FLAM_C SINE Alu -17 126 1 298 193 35 153 chr6 7974531 7974733 -181304821 - L1MC4 LINE L1 -1 8041 7864 1946 115 39 0 chr6 7974735 7975014 -181304540 + AluSx SINE Alu 3 292 -20 627 216 58 0 chr6 7975087 7975226 -181304328 - L1ME2 LINE L1 -10 6154 6008 * 919 260 115 41 chr6 7975218 7975637 -181303917 - L1ME LINE L1 -5620 450 1 1675 175 15 4 chr6 7975825 7976099 -181303455 - AluJo SINE Alu -35 277 1 1102 129 13 0 chr6 7976350 7976505 -181303049 + AluSq SINE Alu 137 293 -20 196 374 32 11 chr6 7976744 7976934 -181302620 - L2 LINE L2 -464 2850 2657 1581 219 164 39 chr6 7977760 7978180 -181301374 + MLT1E2 LTR MaLR 51 548 -78 1998 143 3 0 chr6 7978180 7978474 -181301080 - AluJb SINE Alu -17 295 1 1581 219 164 39 chr6 7978474 7978565 -181300989 + MLT1E2 LTR MaLR 548 626 0 539 280 70 0 chr6 7978646 7978846 -181300708 + MIR SINE MIR 33 246 -16 193 331 192 0 chr6 7980311 7980441 -181299113 + MER5A DNA MER1_type 7 161 -28 * 378 306 8 8 chr6 7980356 7980480 -181299074 - MER5A DNA MER1_type -65 124 1 286 269 101 40 chr6 7982490 7982639 -181296915 - L3 LINE CR1 -114 1463 1306 765 230 133 5 chr6 7982639 7982835 -181296719 - MER58A DNA MER1_type 0 224 4 360 246 246 0 chr6 7983893 7984035 -181295519 + MER5A DNA MER1_type 13 189 0 5356 244 63 43 chr6 7984304 7984634 -181294920 - L1MEc LINE L1 -3180 3035 2713 1805 158 30 0 chr6 7984634 7984937 -181294617 - AluJo SINE Alu 0 312 1 5356 244 63 43 chr6 7984937 7985237 -181294317 - L1MEc LINE L1 -3502 2713 2421 2309 94 0 3 chr6 7985237 7985544 -181294010 - AluY SINE Alu -3 308 3 5356 244 63 43 chr6 7985544 7986718 -181292836 - L1MEc LINE L1 -3794 2421 1163 180 0 0 0 chr6 7986718 7986738 -181292816 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5356 244 63 43 chr6 7986738 7987675 -181291879 - L1MEc LINE L1 -5052 1163 246 1926 184 115 12 chr6 7987723 7988142 -181291412 - MLT1C LTR MaLR 0 467 6 335 313 71 0 chr6 7989472 7989571 -181289983 + L2 LINE L2 3124 3229 -43 334 275 138 14 chr6 7989951 7990089 -181289465 + MIR3 SINE MIR 33 187 -21 2313 119 0 3 chr6 7990222 7990533 -181289021 - AluSx SINE Alu -2 310 1 929 193 31 0 chr6 7990593 7990754 -181288800 - FRAM SINE Alu 0 166 1 2188 106 0 3 chr6 7990982 7991296 -181288258 - AluSx SINE Alu 0 313 1 270 325 0 90 chr6 7992210 7992410 -181287144 + L2 LINE L2 3005 3186 -86 2133 107 0 73 chr6 7992423 7992750 -181286804 - AluSx SINE Alu -9 303 1 708 195 0 0 chr6 7995185 7995308 -181284246 - FLAM_A SINE Alu -10 123 1 1766 196 136 7 chr6 7996181 7996599 -181282955 - MLT1D LTR MaLR -7 498 27 1938 161 3 19 chr6 7996859 7997176 -181282378 + AluJo SINE Alu 1 312 0 206 32 32 0 chr6 7997474 7997505 -181282049 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2254 76 42 0 chr6 7997513 7997801 -181281753 - AluY SINE Alu -10 301 2 224 250 77 29 chr6 7997950 7998054 -181281500 - MER5A DNA MER1_type 0 189 81 2910 174 66 62 chr6 7998219 7998974 -181280580 - L1MCa LINE L1 -5483 943 186 519 199 133 20 chr6 7999818 7999969 -181279585 + MER5B DNA MER1_type 1 168 -10 277 290 106 37 chr6 8001176 8001313 -181278241 + MER5A DNA MER1_type 7 160 -29 453 242 73 0 chr6 8001336 8001460 -181278094 + MER5B DNA MER1_type 1 133 -45 201 296 0 0 chr6 8001721 8001765 -181277789 + MIR SINE MIR 219 262 0 543 277 19 13 chr6 8001988 8002143 -181277411 - MIR SINE MIR -84 178 23 2439 87 6 3 chr6 8002299 8002610 -181276944 + AluSx SINE Alu 1 312 0 2147 117 0 7 chr6 8004796 8005095 -181274459 + AluSx SINE Alu 1 297 -15 895 155 61 0 chr6 8005095 8005243 -181274311 + AluSg/x SINE Alu 134 290 -22 2198 156 15 51 chr6 8005307 8005718 -181273836 - MSTD LTR MaLR 0 396 1 257 135 0 0 chr6 8006498 8006535 -181273019 + 5S rRNA rRNA 2 38 -83 719 221 0 0 chr6 8007197 8007324 -181272230 - FRAM SINE Alu -30 146 20 596 274 78 4 chr6 8008808 8009038 -181270516 - MIR SINE MIR -2 260 14 237 302 147 16 chr6 8009170 8009299 -181270255 - MIR3 SINE MIR -3 205 60 2311 83 0 29 chr6 8009855 8010168 -181269386 - AluSq SINE Alu -9 304 1 2336 88 0 3 chr6 8010794 8011089 -181268465 + AluSq SINE Alu 1 294 -19 1953 132 11 0 chr6 8011222 8011539 -181268015 - AluJb SINE Alu 0 320 1 452 267 0 46 chr6 8011718 8011849 -181267705 - MIR SINE MIR -75 187 63 827 294 127 52 chr6 8012522 8012959 -181266595 - L2 LINE L2 -662 2652 2249 1883 149 30 3 chr6 8012959 8013260 -181266294 + AluSx SINE Alu 3 311 -1 827 294 127 52 chr6 8013260 8013799 -181265755 - L2 LINE L2 -1065 2249 1603 225 200 40 0 chr6 8013816 8013866 -181265688 + MIR SINE MIR 156 207 -55 224 269 0 0 chr6 8014926 8014993 -181264561 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr6 8016989 8017010 -181262544 + (T)n Simple_repeat Simple_repeat 1 21 0 276 264 176 39 chr6 8019109 8019291 -181260263 - Charlie2a DNA MER1_type -1199 1663 1457 616 175 71 0 chr6 8019504 8019630 -181259924 - L1MA9 LINE L1 0 6312 6178 459 245 0 0 chr6 8019631 8019729 -181259825 - L1MA9 LINE L1 -212 6100 6003 389 269 0 37 chr6 8019786 8019894 -181259660 - Charlie2a DNA MER1_type -2715 147 44 1908 157 10 10 chr6 8020761 8021073 -181258481 + AluJb SINE Alu 1 312 0 226 333 118 36 chr6 8021926 8022419 -181257135 + L2 LINE L2 2044 2576 -738 1704 177 75 42 chr6 8022489 8022516 -181257038 - MLT2C1 LTR ERVL 0 397 372 432 0 0 0 chr6 8022516 8022564 -181256990 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1704 177 75 42 chr6 8022564 8022920 -181256634 - MLT2C1 LTR ERVL -25 372 1 3245 159 19 9 chr6 8023669 8024242 -181255312 + L1MC1 LINE L1 5755 6333 0 1465 150 38 23 chr6 8024885 8025151 -181254403 + AluJo SINE Alu 35 304 -8 298 224 109 68 chr6 8025223 8025370 -181254184 - MIR SINE MIR -87 175 23 625 342 98 15 chr6 8026085 8026626 -181252928 - L2 LINE L2 -555 2759 2174 182 195 0 24 chr6 8028253 8028294 -181251260 + L2 LINE L2 794 833 -2481 278 313 104 7 chr6 8028854 8028998 -181250556 - MIR3 SINE MIR -33 175 18 257 255 128 11 chr6 8030015 8030109 -181249445 + MIR3 SINE MIR 93 197 -11 387 0 0 0 chr6 8030609 8030652 -181248902 + (TG)n Simple_repeat Simple_repeat 1 43 0 264 306 171 27 chr6 8033427 8033902 -181245652 - L2 LINE L2 0 3313 2715 661 184 45 39 chr6 8034243 8034422 -181245132 + MER104 DNA MER2_type 1 180 0 202 132 0 26 chr6 8034910 8034948 -181244606 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 302 315 99 0 chr6 8035159 8035270 -181244284 - L2 LINE L2 0 3272 3151 215 0 67 0 chr6 8037118 8037148 -181242406 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 286 312 18 9 chr6 8037463 8037572 -181241982 - L3b LINE CR1 -83 1500 1391 1077 154 5 56 chr6 8037746 8037804 -181241750 + MER5A DNA MER1_type 1 60 -129 1848 105 56 0 chr6 8037804 8038108 -181241446 - AluSq SINE Alu 0 319 1 1077 154 5 56 chr6 8038108 8038243 -181241311 + MER5A DNA MER1_type 60 185 -4 2621 59 0 0 chr6 8038443 8038749 -181240805 - AluY SINE Alu -5 306 1 1919 166 3 3 chr6 8039161 8039468 -181240086 + AluJo SINE Alu 1 307 -5 366 274 57 58 chr6 8040821 8040983 -181238571 - MIR3 SINE MIR -5 203 39 623 179 188 0 chr6 8043520 8043637 -181235917 + FLAM_C SINE Alu 2 140 -3 405 0 0 0 chr6 8043637 8043682 -181235872 + (TA)n Simple_repeat Simple_repeat 1 45 0 1840 148 3 67 chr6 8043872 8044203 -181235351 + AluJo SINE Alu 1 310 -2 1376 169 94 87 chr6 8044489 8044891 -181234663 - MLT1E2 LTR MaLR -211 415 11 1745 68 18 5 chr6 8045300 8045519 -181234035 + L1PA8 LINE L1 5940 6161 -11 503 255 221 5 chr6 8045838 8046042 -181233512 + MIR SINE MIR 2 249 -13 21 82 0 0 chr6 8046198 8046247 -181233307 + AT_rich Low_complexity Low_complexity 1 49 0 318 341 110 18 chr6 8046840 8047004 -181232550 - MIR SINE MIR -71 191 13 3205 40 3 5 chr6 8047898 8048270 -181231284 + L1PA5 LINE L1 5781 6151 -3 259 207 24 37 chr6 8048367 8048449 -181231105 - MIR3 SINE MIR -9 199 119 251 163 41 20 chr6 8049753 8049802 -181229752 - MER81 DNA DNA 0 114 65 229 333 0 13 chr6 8050031 8050106 -181229448 + GA-rich Low_complexity Low_complexity 2 75 0 2057 159 9 18 chr6 8051277 8051616 -181227938 - MER1B DNA MER1_type 0 337 2 704 116 132 25 chr6 8051937 8052058 -181227496 + AluJb SINE Alu 1 134 -178 416 342 27 40 chr6 8052119 8052341 -181227213 + MIR SINE MIR 42 260 -2 2279 96 3 0 chr6 8052560 8052852 -181226702 - AluSq SINE Alu -18 295 3 405 0 0 0 chr6 8053432 8053477 -181226077 + (TG)n Simple_repeat Simple_repeat 2 46 0 215 357 24 24 chr6 8053802 8053928 -181225626 - MIR SINE MIR -32 230 105 1072 266 67 49 chr6 8053981 8054744 -181224810 - L2 LINE L2 -85 3228 2451 1301 176 160 27 chr6 8055571 8055833 -181223721 + AluJo SINE Alu 2 298 -4 2307 102 3 6 chr6 8055977 8056290 -181223264 + AluSq SINE Alu 1 312 -1 403 271 41 16 chr6 8059161 8059283 -181220271 - L2 LINE L2 -6 3266 3142 234 227 0 0 chr6 8059806 8059850 -181219704 + CT-rich Low_complexity Low_complexity 2 45 0 1818 164 0 7 chr6 8059960 8060253 -181219301 + AluJo SINE Alu 1 291 -21 313 173 0 0 chr6 8060868 8060920 -181218634 - L2 LINE L2 -8 3305 3254 2476 124 37 8 chr6 8061108 8061462 -181218092 - THE1B LTR MaLR 0 364 1 2913 172 29 11 chr6 8061489 8062013 -181217541 + L1MB5 LINE L1 5640 6172 -2 320 296 136 16 chr6 8062467 8062592 -181216962 - L2 LINE L2 -7 3265 3126 2078 125 101 18 chr6 8062768 8063105 -181216449 + MLT1A1 LTR MaLR 1 365 0 838 225 73 0 chr6 8063692 8063883 -181215671 + MER3 DNA MER1_type 5 209 0 206 301 87 48 chr6 8063960 8064166 -181215388 - L2 LINE L2 -926 2388 2175 * 219 262 43 92 chr6 8064148 8064289 -181215265 + MIR SINE MIR 79 212 -50 717 154 22 66 chr6 8065081 8065217 -181214337 + FLAM_A SINE Alu 4 133 0 400 303 65 40 chr6 8065222 8065499 -181214055 + L1MEd LINE L1 948 1231 -4888 2064 50 88 0 chr6 8065644 8065927 -181213627 - AluY SINE Alu 0 306 1 1799 131 13 26 chr6 8066365 8066670 -181212884 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 8066732 8066753 -181212801 + AT_rich Low_complexity Low_complexity 1 21 0 1047 230 21 60 chr6 8066850 8067185 -181212369 + L1MD2 LINE L1 6028 6349 -10 481 288 157 37 chr6 8067889 8068013 -181211541 + L1M4 LINE L1 3223 3331 -2815 2254 105 19 0 chr6 8068013 8068328 -181211226 + L1PB1 LINE L1 5828 6148 -3 481 288 157 37 chr6 8068328 8068578 -181210976 + L1M4 LINE L1 3331 3642 -2504 1732 145 59 31 chr6 8068584 8068908 -181210646 + MER44D DNA MER2_type 1 603 -6 264 231 13 128 chr6 8069114 8069193 -181210361 - L1M4 LINE L1 -2045 4101 4047 2674 40 0 0 chr6 8069193 8069495 -181210059 + AluY SINE Alu 1 302 -9 264 231 13 128 chr6 8069495 8069571 -181209983 - L1M4 LINE L1 -2099 4047 3964 926 158 7 0 chr6 8069715 8069861 -181209693 - FRAM SINE Alu -30 146 1 3556 161 28 5 chr6 8069863 8070498 -181209056 - L1MB3 LINE L1 -44 6139 5490 213 200 60 0 chr6 8072595 8072645 -181206909 + CT-rich Low_complexity Low_complexity 4 56 0 611 225 86 91 chr6 8072647 8073177 -181206377 - MLT1F1 LTR MaLR 0 567 84 249 108 0 0 chr6 8073950 8073987 -181205567 + (T)n Simple_repeat Simple_repeat 1 37 0 848 113 60 65 chr6 8074413 8074581 -181204973 - L1MA9 LINE L1 0 6312 6146 1296 193 35 0 chr6 8074585 8074839 -181204715 - L1MA9 LINE L1 -322 5990 5728 203 265 92 20 chr6 8075304 8075402 -181204152 - MIR SINE MIR -65 197 93 1123 239 123 106 chr6 8078526 8079233 -181200321 + LTR8A LTR ERV1 2 720 -7 669 302 90 18 chr6 8080015 8080402 -181199152 - HsTC2 DNA Tc2 -1007 891 477 291 235 0 0 chr6 8080390 8080458 -181199096 - HsTC2 DNA Tc2 -1599 299 232 * 1303 93 0 0 chr6 8080659 8080842 -181198712 - AluY SINE Alu 0 311 129 317 198 37 0 chr6 8080863 8080944 -181198610 - L1MB4 LINE L1 -1 6179 6096 2823 238 89 26 chr6 8081379 8082485 -181197069 - L1M4 LINE L1 -1215 4931 3757 1633 172 3 17 chr6 8082820 8083111 -181196443 + AluJo SINE Alu 2 288 -24 23 54 0 0 chr6 8083111 8083148 -181196406 + AT_rich Low_complexity Low_complexity 1 37 0 225 268 0 93 chr6 8083580 8083677 -181195877 - L1MEc LINE L1 -6142 254 167 1867 135 24 0 chr6 8085044 8085340 -181194214 + AluSx SINE Alu 1 303 -9 1053 164 22 6 chr6 8085784 8085967 -181193587 + MER5A DNA MER1_type 4 189 0 767 167 56 167 chr6 8085971 8086091 -181193463 + MIR SINE MIR 20 95 -167 1572 142 127 0 chr6 8086091 8086359 -181193195 - AluJb SINE Alu 0 302 1 767 167 56 167 chr6 8086359 8086507 -181193047 + MIR SINE MIR 95 258 -4 252 0 0 0 chr6 8086652 8086680 -181192874 + (A)n Simple_repeat Simple_repeat 1 28 0 2671 29 0 0 chr6 8087136 8087447 -181192107 - AluYa5 SINE Alu 0 311 1 1758 161 0 7 chr6 8088638 8088936 -181190618 - AluJb SINE Alu -16 296 1 258 280 174 8 chr6 8089133 8089265 -181190289 + MIR SINE MIR 47 200 -62 217 378 49 6 chr6 8089442 8089606 -181189948 - MIR SINE MIR -69 193 23 360 291 94 49 chr6 8090601 8090804 -181188750 + MIR SINE MIR 1 212 -50 415 95 0 0 chr6 8091594 8091657 -181187897 + Alu SINE Alu 240 302 -10 1028 276 97 23 chr6 8093448 8093542 -181186012 - MLT1K LTR MaLR 0 588 502 2298 94 0 0 chr6 8093542 8093851 -181185703 - AluY SINE Alu -2 309 1 1028 276 97 23 chr6 8093851 8094198 -181185356 - MLT1K LTR MaLR -86 502 114 1868 131 28 3 chr6 8094290 8094580 -181184974 + AluSx SINE Alu 1 297 -15 374 259 238 21 chr6 8094779 8094972 -181184582 + MIR SINE MIR 10 244 -18 2057 121 7 3 chr6 8097418 8097724 -181181830 - AluSq SINE Alu -6 307 1 203 81 54 0 chr6 8099418 8099455 -181180099 + CT-rich Low_complexity Low_complexity 5 43 0 1985 104 7 4 chr6 8101201 8101481 -181178073 - AluSx SINE Alu -31 281 1 214 300 38 12 chr6 8102414 8102494 -181177060 - MER5A DNA MER1_type -65 124 43 1685 252 80 74 chr6 8103306 8103353 -181176201 - MER21B LTR ERV1 -106 757 712 1655 193 23 0 chr6 8103353 8103658 -181175896 - AluJo SINE Alu 0 312 1 1685 252 80 74 chr6 8103658 8104351 -181175203 - MER21B LTR ERV1 -151 712 13 700 210 40 65 chr6 8104613 8104861 -181174693 - MLT1J2 LTR MaLR -189 261 20 376 337 30 45 chr6 8104863 8105026 -181174528 + L2 LINE L2 2879 3040 -273 1643 140 29 32 chr6 8105026 8105334 -181174220 + AluJo SINE Alu 1 307 -5 376 337 30 45 chr6 8105334 8105372 -181174182 + L2 LINE L2 3040 3077 -236 2724 196 12 55 chr6 8105432 8105946 -181173608 - MLT2B3 LTR ERVL -2 552 64 1524 181 36 0 chr6 8105946 8106227 -181173327 + AluJo SINE Alu 2 292 -20 2724 196 12 55 chr6 8106227 8106289 -181173265 - MLT2B3 LTR ERVL -490 64 1 570 268 75 36 chr6 8106803 8107174 -181172380 - L1MEd LINE L1 -4869 1250 967 376 317 81 43 chr6 8107194 8107380 -181172174 - L1MEd LINE L1 -5078 1041 849 220 0 0 79 chr6 8107448 8107486 -181172068 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2153 111 0 3 chr6 8107893 8108190 -181171364 + AluSx SINE Alu 5 300 -12 187 319 42 59 chr6 8108391 8108510 -181171044 + L2 LINE L2 2636 2752 -562 210 246 148 0 chr6 8109512 8109573 -181169981 + L2 LINE L2 3244 3313 0 404 304 56 0 chr6 8110330 8110455 -181169099 + MIR SINE MIR 20 151 -111 274 313 36 27 chr6 8114099 8114211 -181165343 - MER5A DNA MER1_type -71 118 6 292 284 60 66 chr6 8115861 8115998 -181163556 - MIR SINE MIR -61 147 15 282 298 128 21 chr6 8118567 8118708 -181160846 + L2 LINE L2 3158 3313 0 259 352 193 0 chr6 8121284 8121429 -181158125 - MIR SINE MIR -13 249 77 1504 257 82 23 chr6 8122436 8123008 -181156546 + L1MC5 LINE L1 6927 7532 -429 2107 118 53 28 chr6 8123067 8123422 -181156132 + THE1B LTR MaLR 1 364 0 297 250 133 39 chr6 8123494 8123622 -181155932 + L1ME3A LINE L1 6031 6170 0 1262 184 93 25 chr6 8124670 8124948 -181154606 - AluJb SINE Alu -11 301 5 1186 163 62 15 chr6 8125025 8125377 -181154177 - Tigger1 DNA MER2_type 0 2418 1 614 184 0 0 chr6 8126192 8126290 -181153264 + AluJ/FLAM SINE Alu 2 99 -213 1468 153 15 23 chr6 8126291 8126552 -181153002 + AluJo SINE Alu 30 288 -24 386 298 50 73 chr6 8127405 8127707 -181151847 + L1ME LINE L1 5511 5805 -316 1937 123 24 0 chr6 8128617 8128909 -181150645 - AluSq SINE Alu -14 299 1 312 70 0 0 chr6 8130072 8130115 -181149439 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1804 176 49 9 chr6 8131162 8131508 -181148046 - MLT1A1 LTR MaLR 0 365 6 1926 175 62 27 chr6 8132399 8132850 -181146704 + MLT1C LTR MaLR 1 467 0 274 289 103 57 chr6 8135528 8135791 -181143763 + L2 LINE L2 2809 3083 -189 1705 152 18 7 chr6 8136515 8136798 -181142756 + AluJo SINE Alu 9 294 -18 2133 104 3 10 chr6 8136805 8137114 -181142440 + AluSg SINE Alu 1 307 -3 2311 83 0 0 chr6 8138556 8138856 -181140698 + AluSc SINE Alu 2 301 -8 1431 185 3 52 chr6 8139094 8139418 -181140136 + AluJo SINE Alu 5 312 0 29 60 0 0 chr6 8140790 8140840 -181138714 + GC_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr6 8140973 8141002 -181138552 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 8141188 8141208 -181138346 + (CCG)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr6 8141212 8141243 -181138311 + GC_rich Low_complexity Low_complexity 1 31 0 200 248 0 70 chr6 8141344 8141473 -181138081 + C-rich Low_complexity Low_complexity 3 122 0 189 367 20 10 chr6 8142396 8142494 -181137060 + L2 LINE L2 2418 2516 -798 974 312 204 32 chr6 8142749 8143914 -181135640 + L2 LINE L2 107 1472 -1842 1984 189 60 35 chr6 8143982 8144464 -181135090 + MLT1D LTR MaLR 10 503 -2 272 254 45 55 chr6 8144466 8144576 -181134978 + L2 LINE L2 1567 1675 -1639 842 286 205 9 chr6 8144582 8145148 -181134406 + L2 LINE L2 1782 2458 -856 547 155 0 0 chr6 8145158 8145242 -181134312 - AluS SINE Alu -227 85 2 441 297 141 47 chr6 8145285 8146051 -181133503 + L2 LINE L2 2462 3312 -1 233 219 0 109 chr6 8146521 8146558 -181132996 + L2 LINE L2 3216 3245 -27 2272 138 36 17 chr6 8146558 8146914 -181132640 + THE1B LTR MaLR 1 363 -1 233 219 0 109 chr6 8146914 8146940 -181132614 + L2 LINE L2 3245 3272 0 2150 107 0 0 chr6 8147108 8147398 -181132156 - AluSg SINE Alu -20 290 1 251 268 89 71 chr6 8148649 8148761 -181130793 + MER5B DNA MER1_type 5 118 -60 225 287 76 80 chr6 8148945 8149182 -181130372 - LTR67 LTR ERVL -138 419 184 1972 149 3 0 chr6 8149316 8149618 -181129936 - AluSq SINE Alu -10 303 1 245 276 71 0 chr6 8149699 8149797 -181129757 + MER103 DNA DNA 59 163 -3 843 274 126 26 chr6 8149971 8150321 -181129233 - L2 LINE L2 -4 3309 2925 3813 263 72 77 chr6 8150346 8152133 -181127421 - L2 LINE L2 -527 2787 1011 281 357 80 23 chr6 8152247 8152676 -181126878 + L2 LINE L2 2533 2983 -289 238 200 0 29 chr6 8152736 8152806 -181126748 - LTR66 LTR ERVL -142 468 401 486 120 0 0 chr6 8152825 8152900 -181126654 + (CA)n Simple_repeat Simple_repeat 2 76 0 1527 141 24 0 chr6 8152900 8153149 -181126405 - Tigger2 DNA MER2_type -3 2715 2461 3917 127 29 8 chr6 8153206 8153822 -181125732 - Tigger2 DNA MER2_type -1964 754 126 328 205 152 41 chr6 8153937 8154126 -181125428 + L1P4 LINE L1 5575 5796 -370 329 311 49 25 chr6 8154150 8154272 -181125282 + MIR SINE MIR 12 136 -126 4106 244 71 61 chr6 8154332 8156031 -181123523 + L1MCc LINE L1 20 1745 -5069 351 0 0 0 chr6 8156031 8156070 -181123484 + (CA)n Simple_repeat Simple_repeat 2 40 0 4106 244 71 61 chr6 8156070 8156255 -181123299 + L1MCc LINE L1 1745 1927 -4887 39269 77 11 9 chr6 8156261 8162388 -181117166 + L1PA6 LINE L1 12 6152 -2 31 26 0 0 chr6 8162741 8162779 -181116775 + AT_rich Low_complexity Low_complexity 1 38 0 2277 192 8 3 chr6 8163036 8163417 -181116137 - MER70A LTR ERVL 0 472 90 912 217 12 0 chr6 8163412 8163573 -181115981 - MER70B LTR ERVL -415 163 1 * 641 205 155 0 chr6 8163722 8163883 -181115671 - MER5A DNA MER1_type 0 189 4 622 329 79 56 chr6 8163924 8164428 -181115126 - HAL1b LINE L1 -756 592 77 2260 145 17 3 chr6 8165374 8165733 -181113821 - MLT1A1 LTR MaLR 0 365 2 2060 125 0 7 chr6 8166043 8166346 -181113208 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 8166911 8166933 -181112621 + AT_rich Low_complexity Low_complexity 1 22 0 1988 136 13 0 chr6 8167033 8167342 -181112212 - AluSq SINE Alu 0 313 1 1975 105 34 3 chr6 8168243 8168539 -181111015 - AluSx SINE Alu -7 305 1 1286 156 93 14 chr6 8168648 8168954 -181110600 + MLT1B LTR MaLR 1 386 -4 432 106 0 0 chr6 8169104 8169170 -181110384 - Alu SINE Alu -10 301 236 985 93 6 28 chr6 8171053 8171235 -181108319 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 184 270 0 0 chr6 8171906 8171943 -181107611 + L2 LINE L2 3180 3216 -97 2872 127 7 25 chr6 8171984 8172417 -181107137 - MSTC LTR MaLR -3 425 1 376 226 75 50 chr6 8172672 8172831 -181106723 - MER46C DNA MER2_type -174 164 2 260 303 56 56 chr6 8173183 8173325 -181106229 - MIR SINE MIR -93 169 28 2029 113 19 32 chr6 8173434 8173745 -181105809 + THE1B LTR MaLR 1 307 -57 38205 44 5 0 chr6 8173745 8179849 -181099705 - L1PA4 LINE L1 -9 6146 11 480 129 14 0 chr6 8179854 8179924 -181099630 + THE1B LTR MaLR 294 364 0 24 32 0 0 chr6 8180862 8180893 -181098661 + AT_rich Low_complexity Low_complexity 1 31 0 2130 96 7 0 chr6 8180949 8181265 -181098289 - AluSx SINE Alu 0 318 1 22 0 0 0 chr6 8181375 8181397 -181098157 + AT_rich Low_complexity Low_complexity 1 22 0 839 128 0 8 chr6 8182514 8182639 -181096915 - FLAM_C SINE Alu -19 124 1 260 331 105 0 chr6 8182802 8182926 -181096628 - L2 LINE L2 -2823 491 355 1675 165 35 3 chr6 8183267 8183552 -181096002 - AluJo SINE Alu -18 294 1 27 0 0 0 chr6 8183849 8183876 -181095678 + AT_rich Low_complexity Low_complexity 1 27 0 1706 159 37 0 chr6 8184919 8185190 -181094364 + AluJo SINE Alu 1 281 -31 189 107 0 0 chr6 8185191 8185219 -181094335 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 806 214 6 12 chr6 8185424 8185592 -181093962 - FRAM SINE Alu -6 170 4 2267 92 0 7 chr6 8186383 8186686 -181092868 + AluSx SINE Alu 1 301 -11 308 250 205 19 chr6 8186756 8186912 -181092642 + L1ME4a LINE L1 5699 5883 -238 460 206 89 7 chr6 8187008 8187154 -181092400 + L1ME4a LINE L1 5940 6097 -24 936 82 8 0 chr6 8187247 8187369 -181092185 + AluSq/x SINE Alu 2 124 -189 181 302 93 93 chr6 8188879 8189008 -181090546 + MIR SINE MIR 16 144 -64 2082 115 37 0 chr6 8189320 8189616 -181089938 - AluSx SINE Alu -5 307 1 31 44 0 0 chr6 8189662 8189707 -181089847 + AT_rich Low_complexity Low_complexity 1 45 0 283 295 0 0 chr6 8189991 8190052 -181089502 + (CA)n Simple_repeat Simple_repeat 1 61 0 1772 99 0 0 chr6 8190255 8190478 -181089076 - AluSg/x SINE Alu -15 297 75 2898 6 0 0 chr6 8190976 8191287 -181088267 + AluYa5 SINE Alu 1 311 0 1014 153 74 60 chr6 8191502 8191718 -181087836 - MER20 DNA MER1_type 0 219 1 3339 164 7 17 chr6 8192096 8192225 -181087329 - L1MB3 LINE L1 0 6183 6054 2302 101 0 22 chr6 8192225 8192543 -181087011 - AluSq SINE Alu -2 311 1 3339 164 7 17 chr6 8192543 8192998 -181086556 - L1MB3 LINE L1 -129 6054 5605 22 0 0 0 chr6 8193723 8193745 -181085809 + AT_rich Low_complexity Low_complexity 1 22 0 2317 100 0 3 chr6 8194290 8194590 -181084964 + AluSq SINE Alu 1 299 -14 365 289 147 26 chr6 8195101 8195333 -181084221 - MIR SINE MIR -1 261 2 239 357 56 16 chr6 8196014 8196140 -181083414 + MIR SINE MIR 20 150 -112 201 39 0 0 chr6 8196452 8196478 -181083076 + (TG)n Simple_repeat Simple_repeat 2 27 0 764 96 0 0 chr6 8196478 8196572 -181082982 - AluSg/x SINE Alu -26 284 191 1947 122 16 48 chr6 8196960 8197271 -181082283 - AluSx SINE Alu -7 305 5 2177 125 0 0 chr6 8197521 8197816 -181081738 - AluSx SINE Alu -17 295 1 2228 119 0 0 chr6 8199286 8199581 -181079973 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr6 8200555 8200599 -181078955 + AT_rich Low_complexity Low_complexity 1 44 0 2243 132 0 0 chr6 8200616 8200927 -181078627 - AluSx SINE Alu -1 311 1 404 278 161 42 chr6 8201069 8201692 -181077862 - L1MEd LINE L1 -3219 2910 2186 2407 75 0 3 chr6 8201692 8201986 -181077568 + AluSc SINE Alu 1 293 -16 404 278 161 42 chr6 8201986 8202093 -181077461 - L1MEd LINE L1 -3943 2186 2093 1194 256 95 53 chr6 8202482 8203312 -181076242 - L1MEd LINE L1 -4752 1558 660 186 204 68 0 chr6 8203631 8203675 -181075879 + L2 LINE L2 361 407 -2907 922 241 129 38 chr6 8203700 8204041 -181075513 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr6 8204908 8204931 -181074623 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1638 99 0 0 chr6 8205212 8205424 -181074130 - AluSq SINE Alu -6 307 96 767 144 23 38 chr6 8205438 8205570 -181073984 - AluSq/x SINE Alu -181 131 2 710 117 27 0 chr6 8206273 8206384 -181073170 + L1MA7 LINE L1 6173 6286 -5 963 125 0 29 chr6 8206389 8206525 -181073029 + FLAM_C SINE Alu 2 133 0 24 32 0 0 chr6 8207335 8207366 -181072188 + AT_rich Low_complexity Low_complexity 1 31 0 2081 119 16 19 chr6 8207858 8208169 -181071385 + AluSx SINE Alu 1 310 -2 1324 95 105 0 chr6 8209571 8209761 -181069793 + L1PB1 LINE L1 5938 6147 -4 195 42 0 0 chr6 8211030 8211054 -181068500 + (TG)n Simple_repeat Simple_repeat 2 25 0 241 293 0 0 chr6 8211225 8211283 -181068271 + CT-rich Low_complexity Low_complexity 5 62 0 1342 265 164 20 chr6 8211957 8212554 -181067000 + L2 LINE L2 1662 2344 -970 530 134 34 92 chr6 8212543 8212662 -181066892 + MIR SINE MIR 106 217 -45 * 2410 84 0 3 chr6 8213850 8214148 -181065406 + AluSc SINE Alu 1 297 -12 607 162 45 18 chr6 8214858 8214969 -181064585 + FLAM_A SINE Alu 24 137 -5 352 272 130 19 chr6 8216325 8216487 -181063067 - MIR SINE MIR -10 252 73 474 314 100 18 chr6 8216501 8216721 -181062833 + MIR SINE MIR 15 252 -10 509 301 159 40 chr6 8217924 8217956 -181061598 + MIR SINE MIR 3 30 -232 2134 137 0 0 chr6 8217956 8218262 -181061292 + AluSx SINE Alu 1 306 -6 509 301 159 40 chr6 8218262 8218455 -181061099 + MIR SINE MIR 30 255 -7 1943 153 13 7 chr6 8219189 8219497 -181060057 - AluJo SINE Alu -2 310 1 662 281 93 39 chr6 8219924 8220360 -181059194 + L1MC4a LINE L1 5481 5937 -227 2367 79 10 0 chr6 8220484 8220776 -181058778 - AluY SINE Alu -16 295 1 30 59 0 0 chr6 8222310 8222361 -181057193 + AT_rich Low_complexity Low_complexity 1 51 0 940 194 0 0 chr6 8222434 8222594 -181056960 + MER3 DNA MER1_type 1 160 -49 2290 106 3 3 chr6 8222765 8223076 -181056478 + AluSq SINE Alu 1 311 -2 2407 77 3 6 chr6 8227771 8228084 -181051470 - AluSp SINE Alu -1 312 1 380 298 17 15 chr6 8228320 8228461 -181051093 + MIR3 SINE MIR 56 196 -12 1893 267 117 66 chr6 8229358 8229614 -181049940 + L1ME3A LINE L1 807 1048 -5081 2272 117 3 0 chr6 8229614 8229921 -181049633 + AluSx SINE Alu 1 308 -4 1893 267 117 66 chr6 8229921 8230686 -181048868 + L1ME3A LINE L1 1048 1772 -4357 2159 112 7 0 chr6 8230686 8230981 -181048573 - AluSx SINE Alu -15 297 1 1893 267 117 66 chr6 8230981 8231232 -181048322 + L1ME3A LINE L1 1772 2009 -4120 2305 103 3 6 chr6 8231232 8231543 -181048011 - AluSp SINE Alu -3 310 1 1893 267 117 66 chr6 8231543 8232849 -181046705 + L1ME3A LINE L1 2009 3565 -2564 1681 268 66 29 chr6 8232857 8233416 -181046138 - MLT1E LTR MaLR -13 580 1 530 233 74 81 chr6 8233418 8233689 -181045865 + L1ME3A LINE L1 3562 3830 -2299 * 1982 250 48 67 chr6 8233688 8234529 -181045025 + L1ME3A LINE L1 5276 6100 -53 199 414 69 0 chr6 8234560 8234676 -181044878 - L2 LINE L2 -28 3244 3121 2775 148 16 20 chr6 8234806 8235253 -181044301 + MER65A LTR ERV1 1 445 0 2884 102 53 12 chr6 8235287 8235698 -181043856 - MSTA LTR MaLR 0 428 1 2208 129 0 0 chr6 8236207 8236517 -181043037 + AluSx SINE Alu 1 310 -2 1836 177 32 0 chr6 8236521 8236832 -181042722 + MLT1A1 LTR MaLR 45 365 0 307 294 92 9 chr6 8237441 8237550 -181042004 + MER94 DNA DNA 16 133 -1 2791 157 42 13 chr6 8239225 8239697 -181039857 + MER66B LTR ERV1 1 486 0 1462 203 65 15 chr6 8240176 8240247 -181039307 - MER2 DNA MER2_type -2 342 276 2277 111 0 13 chr6 8240247 8240554 -181039000 + AluSg SINE Alu 1 303 -7 1462 203 65 15 chr6 8240554 8240807 -181038747 - MER2 DNA MER2_type -68 276 2 21 57 0 0 chr6 8241839 8241874 -181037680 + AT_rich Low_complexity Low_complexity 1 35 0 2485 156 2 44 chr6 8242195 8242624 -181036930 + MER47B DNA MER2_type 8 418 0 1256 156 5 18 chr6 8243086 8243304 -181036250 - MSTB LTR MaLR 0 426 212 * 1601 258 48 50 chr6 8243292 8243808 -181035746 - MER21B LTR ERV1 -348 515 1 199 79 53 0 chr6 8244483 8244521 -181035033 + T-rich Low_complexity Low_complexity 3 42 0 577 282 95 26 chr6 8244603 8244876 -181034678 - L2 LINE L2 -1 3312 3021 195 129 0 0 chr6 8245190 8245221 -181034333 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 342 262 47 19 chr6 8246280 8246387 -181033167 - L3 LINE CR1 -125 1452 1343 181 273 78 26 chr6 8246508 8246585 -181032969 - L3 LINE CR1 -410 1167 1087 2157 107 0 0 chr6 8246993 8247273 -181032281 - AluSx SINE Alu -32 280 1 309 309 190 4 chr6 8247275 8247453 -181032101 - MIR SINE MIR -37 225 9 1838 156 102 15 chr6 8247479 8247813 -181031741 - MLT1A1 LTR MaLR -2 363 1 631 203 55 1 chr6 8248109 8248252 -181031302 - L1ME2 LINE L1 -2 6332 6022 2056 213 20 20 chr6 8248254 8248710 -181030844 - L1ME2 LINE L1 -244 5922 5467 21 0 0 0 chr6 8248781 8248802 -181030752 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 0 3 chr6 8248804 8249112 -181030442 + AluY SINE Alu 1 307 0 2202 143 37 69 chr6 8249834 8250108 -181029446 - L1MA9 LINE L1 0 6312 6058 1882 116 60 28 chr6 8250108 8250392 -181029162 - AluSx SINE Alu -19 293 1 2202 143 37 69 chr6 8250392 8250580 -181028974 - L1MA9 LINE L1 -254 6058 5865 544 209 59 44 chr6 8250580 8250834 -181028720 - L1ME2 LINE L1 -733 5445 5189 1028 150 12 0 chr6 8250870 8251037 -181028517 + AluJb SINE Alu 128 296 -16 650 199 23 0 chr6 8251076 8251207 -181028347 - L1MA10 LINE L1 -10 6324 6191 512 157 41 75 chr6 8251214 8251361 -181028193 - L1ME2 LINE L1 -960 5186 5045 22 70 0 0 chr6 8251521 8251564 -181027990 + AT_rich Low_complexity Low_complexity 1 43 0 361 292 94 94 chr6 8251624 8251652 -181027902 + L2 LINE L2 3077 3104 -209 3139 144 49 103 chr6 8251652 8251726 -181027828 + MER73 LTR ERVL 1 77 -567 2291 50 0 0 chr6 8251726 8252003 -181027551 + AluY SINE Alu 1 277 -34 333 0 0 0 chr6 8252004 8252041 -181027513 + (CA)n Simple_repeat Simple_repeat 1 37 0 3139 144 49 103 chr6 8252041 8252396 -181027158 + MER73 LTR ERVL 77 384 -260 2032 125 0 39 chr6 8252396 8252708 -181026846 + AluSx SINE Alu 1 300 -12 3139 144 49 103 chr6 8252708 8252953 -181026601 + MER73 LTR ERVL 384 641 -3 361 292 94 94 chr6 8252953 8253157 -181026397 + L2 LINE L2 3103 3309 -4 1906 129 48 14 chr6 8253750 8254044 -181025510 - AluSg SINE Alu -6 304 1 2416 92 0 13 chr6 8254722 8255038 -181024516 + AluSx SINE Alu 1 312 0 2670 172 42 12 chr6 8255385 8255422 -181024132 - L1MA9 LINE L1 -5 6307 6273 2418 100 0 0 chr6 8255422 8255732 -181023822 + AluSg SINE Alu 1 310 0 2670 172 42 12 chr6 8255732 8256194 -181023360 - L1MA9 LINE L1 -39 6273 5793 265 291 20 20 chr6 8256643 8256794 -181022760 + (TA)n Simple_repeat Simple_repeat 1 151 0 324 0 0 0 chr6 8256805 8256841 -181022713 + (CA)n Simple_repeat Simple_repeat 2 37 0 2098 108 7 14 chr6 8256868 8257165 -181022389 - AluSx SINE Alu -16 296 2 467 199 89 7 chr6 8257258 8257404 -181022150 - L1ME4a LINE L1 -24 6097 5940 310 250 205 19 chr6 8257500 8257656 -181021898 - L1ME4a LINE L1 -238 5883 5699 2259 93 0 7 chr6 8257726 8258028 -181021526 - AluSx SINE Alu -12 300 1 806 214 6 12 chr6 8258819 8258987 -181020567 + FRAM SINE Alu 4 170 -6 189 107 0 0 chr6 8259192 8259220 -181020334 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1706 159 37 0 chr6 8259221 8259492 -181020062 - AluJo SINE Alu -31 281 1 27 0 0 0 chr6 8260534 8260561 -181018993 + AT_rich Low_complexity Low_complexity 1 27 0 1675 165 35 3 chr6 8260858 8261143 -181018411 + AluJo SINE Alu 1 294 -18 260 331 105 0 chr6 8261484 8261608 -181017946 + L2 LINE L2 355 491 -2823 839 128 0 8 chr6 8261771 8261896 -181017658 + FLAM_C SINE Alu 1 124 -19 2131 96 7 0 chr6 8263145 8263461 -181016093 + AluSx SINE Alu 1 318 0 23 33 0 0 chr6 8263517 8263547 -181016007 + AT_rich Low_complexity Low_complexity 1 30 0 480 129 14 0 chr6 8264485 8264555 -181014999 - THE1B LTR MaLR 0 364 294 43915 46 6 1 chr6 8264560 8270664 -181008890 + L1PA4 LINE L1 11 6144 -11 2012 115 19 32 chr6 8270664 8270978 -181008576 - THE1B LTR MaLR -54 310 1 236 310 56 56 chr6 8271087 8271229 -181008325 + MIR SINE MIR 28 169 -93 404 226 75 50 chr6 8271581 8271740 -181007814 + MER46C DNA MER2_type 2 164 -174 3018 127 7 25 chr6 8271995 8272428 -181007126 + MSTC LTR MaLR 1 425 -3 182 270 0 0 chr6 8272469 8272506 -181007048 - L2 LINE L2 -97 3216 3180 883 117 6 28 chr6 8273176 8273356 -181006198 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 448 106 0 0 chr6 8275234 8275300 -181004254 + Alu SINE Alu 237 302 -10 1261 149 91 15 chr6 8275450 8275756 -181003798 - MLT1B LTR MaLR -4 386 1 2074 98 34 10 chr6 8275865 8276160 -181003394 + AluSx SINE Alu 1 302 -10 2091 136 13 0 chr6 8277065 8277374 -181002180 + AluSq SINE Alu 1 313 0 22 0 0 0 chr6 8277485 8277507 -181002047 + AT_rich Low_complexity Low_complexity 1 22 0 2185 122 0 7 chr6 8278071 8278374 -181001180 - AluSx SINE Alu -11 301 1 2378 145 17 3 chr6 8278684 8279043 -181000511 + MLT1A1 LTR MaLR 2 365 0 492 343 72 38 chr6 8280046 8280492 -180999062 + HAL1b LINE L1 132 592 -756 639 192 160 0 chr6 8280538 8280694 -180998860 + MER5A DNA MER1_type 9 189 0 902 217 12 0 chr6 8280843 8281004 -180998550 + MER70A LTR ERVL 1 163 -309 * 2233 192 8 3 chr6 8280999 8281380 -180998174 + MER70A LTR ERVL 90 472 0 31 26 0 0 chr6 8281637 8281675 -180997879 + AT_rich Low_complexity Low_complexity 1 38 0 39072 77 13 11 chr6 8282029 8288155 -180991399 - L1PA6 LINE L1 -2 6152 12 4021 245 70 61 chr6 8288161 8288346 -180991208 - L1MCc LINE L1 -4887 1536 1354 243 0 0 0 chr6 8288346 8288373 -180991181 + (TG)n Simple_repeat Simple_repeat 2 28 0 4021 245 70 61 chr6 8288373 8290074 -180989480 - L1MCc LINE L1 -5069 1354 20 316 311 49 25 chr6 8290133 8290255 -180989299 - MIR SINE MIR -126 136 12 339 205 152 41 chr6 8290279 8290468 -180989086 - L1P4 LINE L1 -370 5796 5575 3968 127 29 8 chr6 8290583 8291199 -180988355 + Tigger2 DNA MER2_type 126 754 -1964 1549 141 24 0 chr6 8291256 8291505 -180988049 + Tigger2 DNA MER2_type 2461 2715 -3 345 233 0 0 chr6 8291509 8291599 -180987955 + (TA)n Simple_repeat Simple_repeat 1 90 0 250 176 0 54 chr6 8291599 8291673 -180987881 + LTR66 LTR ERVL 399 468 -142 301 285 15 36 chr6 8291721 8291858 -180987696 - L2 LINE L2 -280 2992 2859 464 277 118 40 chr6 8292473 8292714 -180986840 - MIR SINE MIR 0 262 3 310 185 0 0 chr6 8292917 8292971 -180986583 - L2 LINE L2 -2 3270 3217 199 261 54 63 chr6 8292984 8293095 -180986459 + MIR SINE MIR 107 216 -46 2221 90 38 0 chr6 8293161 8293449 -180986105 + AluSx SINE Alu 1 299 -13 191 255 0 59 chr6 8293754 8293805 -180985749 + L2 LINE L2 3144 3191 -81 28 29 0 0 chr6 8293952 8293987 -180985567 + AT_rich Low_complexity Low_complexity 1 35 0 6491 166 28 9 chr6 8294760 8295774 -180983780 + L1PB1 LINE L1 4 1044 -4284 2262 109 0 0 chr6 8295774 8296067 -180983487 - AluSg SINE Alu -17 293 1 6491 166 28 9 chr6 8296067 8296197 -180983357 + L1PB1 LINE L1 1044 1170 -4158 1988 122 24 0 chr6 8296199 8296487 -180983067 + AluSq SINE Alu 1 295 -18 6899 185 19 2 chr6 8296488 8298069 -180981485 + L1PB1 LINE L1 4071 5674 -659 11949 55 5 0 chr6 8298069 8300247 -180979307 + L1PA6 LINE L1 3973 6154 0 4729 75 33 75 chr6 8300247 8300934 -180978620 + L1PB1 LINE L1 5652 6326 -7 383 113 126 24 chr6 8300967 8301050 -180978504 + L1MEc LINE L1 3595 3675 -3890 405 183 0 37 chr6 8301055 8301137 -180978417 - L1 LINE L1 -3438 2708 2630 12949 168 87 21 chr6 8301148 8304089 -180975465 + L1MA4 LINE L1 3705 6452 -1267 207 0 0 0 chr6 8304089 8304112 -180975442 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2269 79 0 0 chr6 8304114 8304393 -180975161 - AluY SINE Alu -32 279 1 12949 168 87 21 chr6 8304393 8305201 -180974353 + L1MA4 LINE L1 6452 7719 0 475 267 7 15 chr6 8305303 8305438 -180974116 - L2 LINE L2 0 3313 3180 * 595 299 38 38 chr6 8305425 8305686 -180973868 - L2 LINE L2 -1035 2279 2019 314 369 40 25 chr6 8305745 8305943 -180973611 + MIR SINE MIR 22 222 -40 2080 119 7 3 chr6 8306187 8306481 -180973073 + AluSc SINE Alu 1 295 -14 2344 102 0 0 chr6 8306916 8307221 -180972333 - AluY SINE Alu -6 305 1 2155 81 0 0 chr6 8307248 8307555 -180971999 - AluY SINE Alu 0 307 1 2685 204 14 40 chr6 8307963 8308133 -180971421 + MER68 LTR ERV1 1 174 -388 1702 109 4 0 chr6 8308133 8308362 -180971192 - MER30 DNA MER1_type 0 230 1 2685 204 14 40 chr6 8308362 8308768 -180970786 + MER68 LTR ERV1 174 562 0 232 229 0 0 chr6 8308813 8308861 -180970693 + MLT1F1 LTR MaLR 78 125 -442 2499 197 55 35 chr6 8308887 8309382 -180970172 + L1MD3 LINE L1 7406 7889 -106 2819 52 25 44 chr6 8309382 8309611 -180969943 + THE1A LTR MaLR 1 222 -133 2396 95 0 7 chr6 8309611 8309917 -180969637 + AluSg SINE Alu 1 304 -6 2819 52 25 44 chr6 8309917 8310049 -180969505 + THE1A LTR MaLR 222 355 0 12641 92 2 1 chr6 8310049 8311627 -180967927 + THE1A-int LTR MaLR 1 1580 0 2844 79 6 6 chr6 8311629 8311982 -180967572 + THE1A LTR MaLR 3 355 0 2499 197 55 35 chr6 8311982 8312060 -180967494 + L1MD3 LINE L1 7889 7995 0 621 203 68 34 chr6 8312193 8312370 -180967184 - L1MC5 LINE L1 -61 7900 7718 1689 151 3 63 chr6 8312370 8312687 -180966867 - AluJo SINE Alu -8 304 7 360 0 0 0 chr6 8312770 8312810 -180966744 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 157 0 0 chr6 8312821 8313012 -180966542 - AluJb SINE Alu -16 296 106 1314 230 54 16 chr6 8313054 8313441 -180966113 - L1MC5 LINE L1 -305 7656 7255 897 185 11 85 chr6 8313453 8313713 -180965841 - L1MC5 LINE L1 -808 7153 6913 924 267 89 36 chr6 8313754 8314147 -180965407 - L1MC4a LINE L1 -893 6915 6502 24 32 0 0 chr6 8314235 8314266 -180965288 + AT_rich Low_complexity Low_complexity 1 31 0 2236 110 13 3 chr6 8314340 8314648 -180964906 + AluSx SINE Alu 1 311 -1 291 54 0 0 chr6 8314650 8314687 -180964867 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 2381 103 0 0 chr6 8314698 8315008 -180964546 + AluSq SINE Alu 1 310 -3 233 309 41 0 chr6 8315118 8315215 -180964339 - L1MC4a LINE L1 -1651 6157 6057 217 300 0 0 chr6 8315270 8315327 -180964227 + (TA)n Simple_repeat Simple_repeat 1 60 -10 1988 140 3 3 chr6 8315327 8315619 -180963935 - AluJb SINE Alu -18 294 3 217 300 0 0 chr6 8315619 8315631 -180963923 + (TA)n Simple_repeat Simple_repeat 59 70 0 11623 116 29 32 chr6 8315653 8316211 -180963343 + Tigger1 DNA MER2_type 24 583 -1835 2174 116 0 7 chr6 8316211 8316512 -180963042 - AluSx SINE Alu -11 301 3 11623 116 29 32 chr6 8316512 8316555 -180962999 + Tigger1 DNA MER2_type 583 625 -1793 1968 99 8 0 chr6 8316555 8316808 -180962746 + AluSc SINE Alu 39 293 -16 11623 116 29 32 chr6 8316808 8317579 -180961975 + Tigger1 DNA MER2_type 625 1397 -1021 2540 27 20 3 chr6 8317579 8317873 -180961681 - AluY SINE Alu -9 302 4 11623 116 29 32 chr6 8317873 8318220 -180961334 + Tigger1 DNA MER2_type 1397 1740 -678 2174 93 7 20 chr6 8318220 8318522 -180961032 + AluY SINE Alu 1 298 -13 11623 116 29 32 chr6 8318522 8318644 -180960910 + Tigger1 DNA MER2_type 1740 1861 -557 799 91 50 0 chr6 8318640 8318761 -180960793 + Tigger1 DNA MER2_type 397 523 -1895 * 3404 148 18 12 chr6 8318753 8319312 -180960242 + Tigger1 DNA MER2_type 1855 2416 -2 472 241 63 44 chr6 8319504 8319662 -180959892 - MER46A DNA MER2_type -74 162 2 252 301 44 44 chr6 8320043 8320179 -180959375 - HAL1b LINE L1 -708 640 505 372 320 73 21 chr6 8320191 8320425 -180959129 - HAL1b LINE L1 -887 461 216 2084 117 3 10 chr6 8320759 8321049 -180958505 + AluSx SINE Alu 1 288 -24 1948 177 74 26 chr6 8321466 8321844 -180957710 + MSTD LTR MaLR 1 396 0 2352 100 0 6 chr6 8322544 8322855 -180956699 + AluSq SINE Alu 1 309 -4 283 299 75 108 chr6 8323441 8323655 -180955899 + L2 LINE L2 2979 3185 -87 267 276 0 0 chr6 8323787 8323845 -180955709 + MLT1J LTR MaLR 242 299 -212 909 156 0 15 chr6 8323847 8323982 -180955572 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 8323982 8324003 -180955551 + AT_rich Low_complexity Low_complexity 1 21 0 959 154 0 0 chr6 8324174 8324317 -180955237 + AluJb SINE Alu 158 300 -12 246 275 94 22 chr6 8324386 8324524 -180955030 + MLT1J LTR MaLR 364 511 0 303 330 11 0 chr6 8325522 8325616 -180953938 + L2 LINE L2 3207 3301 -12 261 254 0 0 chr6 8325645 8325704 -180953850 + MLT1E1 LTR MaLR 596 654 0 610 359 106 21 chr6 8325704 8326322 -180953232 - L2 LINE L2 -181 3132 2447 2162 109 13 10 chr6 8326430 8326733 -180952821 - AluSx SINE Alu -8 304 1 28 71 0 0 chr6 8326861 8326917 -180952637 + AT_rich Low_complexity Low_complexity 1 56 0 213 319 151 8 chr6 8327404 8327523 -180952031 - L2 LINE L2 -328 2944 2809 183 302 0 63 chr6 8327704 8327767 -180951787 - L2 LINE L2 -810 2504 2446 446 278 85 14 chr6 8328339 8328557 -180950997 + L1ME LINE L1 5509 5745 -425 33 43 0 0 chr6 8328636 8328683 -180950871 + AT_rich Low_complexity Low_complexity 1 47 0 1575 100 256 0 chr6 8330282 8330552 -180949002 - MER44D DNA MER2_type 0 609 1 1063 248 58 111 chr6 8330713 8331246 -180948308 + MER21B LTR ERV1 24 528 -335 206 250 0 0 chr6 8331489 8331529 -180948025 - L2 LINE L2 -9 3263 3224 * 694 256 67 0 chr6 8331491 8331671 -180947883 - MIR SINE MIR -5 257 66 473 244 9 43 chr6 8331818 8331933 -180947621 - L2 LINE L2 -7 3265 3155 1990 189 64 11 chr6 8332307 8332747 -180946807 - L1MD2 LINE L1 -2 6357 5895 2390 74 10 0 chr6 8333259 8333556 -180945998 + AluSp SINE Alu 2 301 -12 2310 91 0 36 chr6 8333625 8333933 -180945621 + AluSx SINE Alu 1 297 -15 416 209 37 4 chr6 8334328 8334465 -180945089 + MER5A DNA MER1_type 1 189 0 2148 119 3 0 chr6 8336079 8336374 -180943180 - AluSp SINE Alu -17 296 1 303 219 156 0 chr6 8337337 8337433 -180942121 + L2 LINE L2 3188 3298 -15 2619 48 0 3 chr6 8337571 8337880 -180941674 - AluY SINE Alu -3 308 1 955 174 6 12 chr6 8337888 8338049 -180941505 - FRAM SINE Alu -21 155 1 2067 122 0 3 chr6 8338125 8338411 -180941143 - AluSg SINE Alu -10 300 16 237 352 145 11 chr6 8338589 8338768 -180940786 - MIR SINE MIR -11 251 49 443 193 73 0 chr6 8338798 8338910 -180940644 - L1MB7 LINE L1 -22 6149 6019 655 194 215 26 chr6 8339023 8339214 -180940340 + MIR SINE MIR 36 262 0 247 318 0 0 chr6 8339470 8339533 -180940021 + MLT1L LTR MaLR 1 63 -552 265 250 100 50 chr6 8340009 8340129 -180939425 - L2 LINE L2 -23 3290 3165 14006 120 53 39 chr6 8340994 8341940 -180937614 - Tigger1 DNA MER2_type -13 2405 1473 2420 65 0 0 chr6 8341940 8342232 -180937322 - AluY SINE Alu -19 292 1 14006 120 53 39 chr6 8342232 8342540 -180937014 - Tigger1 DNA MER2_type -945 1473 1171 2536 61 0 3 chr6 8342540 8342851 -180936703 - AluY SINE Alu 0 311 2 14006 120 53 39 chr6 8342851 8343411 -180936143 - Tigger1 DNA MER2_type -1247 1171 620 1785 142 55 0 chr6 8343411 8343686 -180935868 - AluJb SINE Alu -22 290 1 14006 120 53 39 chr6 8343686 8344242 -180935312 - Tigger1 DNA MER2_type -1798 620 1 2137 131 0 3 chr6 8347882 8348188 -180931366 - AluSx SINE Alu -7 305 1 1965 162 51 14 chr6 8398578 8398930 -180880624 - MLT1A1 LTR MaLR 0 365 1 514 133 71 20 chr6 8399072 8399170 -180880384 + Tigger2 DNA MER2_type 2398 2500 -218 2323 83 10 7 chr6 8399561 8399863 -180879691 - AluSg SINE Alu -7 303 1 294 315 0 0 chr6 8400132 8400221 -180879333 - L1MC4 LINE L1 -26 8016 7928 22 0 0 0 chr6 8400348 8400370 -180879184 + AT_rich Low_complexity Low_complexity 1 22 0 371 258 117 75 chr6 8400379 8400496 -180879058 + L1ME LINE L1 5310 5421 -700 2128 119 0 3 chr6 8400496 8400790 -180878764 - AluSx SINE Alu -19 293 1 371 258 117 75 chr6 8400790 8401006 -180878548 + L1ME LINE L1 5421 5657 -464 1851 114 107 11 chr6 8401007 8401279 -180878275 + AluSx SINE Alu 2 299 -13 2390 156 44 35 chr6 8401372 8401801 -180877753 + Tigger2a DNA MER2_type 1 433 -1 2031 113 0 7 chr6 8401910 8402185 -180877369 + AluSx SINE Alu 1 273 -39 195 100 0 0 chr6 8402197 8402227 -180877327 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 310 303 138 9 chr6 8402552 8402661 -180876893 + L2 LINE L2 3125 3247 -25 184 302 48 0 chr6 8403263 8403326 -180876228 + L3 LINE CR1 1495 1560 -17 22 35 0 0 chr6 8403356 8403385 -180876169 + AT_rich Low_complexity Low_complexity 1 29 0 237 117 33 83 chr6 8403794 8403854 -180875700 - L2 LINE L2 -337 2977 2921 2247 94 7 7 chr6 8404812 8405109 -180874445 - AluSg SINE Alu -13 297 1 253 217 87 0 chr6 8405397 8405466 -180874088 + L1ME3A LINE L1 6032 6106 -64 237 296 239 21 chr6 8405628 8405770 -180873784 - MIR SINE MIR -70 192 20 1798 166 3 54 chr6 8405884 8406156 -180873398 + MER7A DNA MER2_type 5 254 -2784 2374 81 0 0 chr6 8406156 8406443 -180873111 + AluSp SINE Alu 1 290 -23 369 0 0 0 chr6 8406443 8406484 -180873070 + (CA)n Simple_repeat Simple_repeat 2 42 0 1798 166 3 54 chr6 8406493 8406582 -180872972 + MER7A DNA MER2_type 254 346 0 226 310 26 26 chr6 8406582 8406695 -180872859 - L1MC/D LINE L1 -2009 5799 5687 23 0 0 0 chr6 8406814 8406837 -180872717 + AT_rich Low_complexity Low_complexity 1 23 0 3132 129 16 2 chr6 8407086 8407528 -180872026 + MER83 LTR ERV1 1 448 0 2222 117 0 0 chr6 8407635 8407935 -180871619 + AluSx SINE Alu 1 300 -12 360 0 0 0 chr6 8407935 8407975 -180871579 + (TA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr6 8408020 8408063 -180871491 + AT_rich Low_complexity Low_complexity 1 43 0 274 324 56 9 chr6 8408107 8408215 -180871339 + MIR3 SINE MIR 15 127 -81 288 300 43 91 chr6 8408513 8408723 -180870831 + L2 LINE L2 3034 3233 -39 204 200 0 0 chr6 8409354 8409394 -180870160 + G-rich Low_complexity Low_complexity 2 41 0 228 67 0 0 chr6 8409992 8410022 -180869532 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2520 226 64 74 chr6 8410783 8411965 -180867589 + L1MC5 LINE L1 6424 7589 -372 422 235 94 34 chr6 8412073 8412222 -180867332 - MER5B DNA MER1_type -19 159 2 556 300 138 66 chr6 8412905 8413075 -180866479 - L2 LINE L2 -20 3252 3096 2199 103 0 10 chr6 8413075 8413366 -180866188 + AluSg1 SINE Alu 1 288 -21 556 300 138 66 chr6 8413366 8413528 -180866026 - L2 LINE L2 -176 3096 2896 2088 196 56 28 chr6 8413623 8413974 -180865580 + MLT2B1 LTR ERVL 3 372 -148 2400 148 28 14 chr6 8413974 8414333 -180865221 - THE1B LTR MaLR 0 364 1 2088 196 56 28 chr6 8414333 8414446 -180865108 + MLT2B1 LTR ERVL 372 480 -40 2142 104 0 7 chr6 8414452 8414732 -180864822 - AluSg SINE Alu -32 278 1 326 349 35 28 chr6 8414765 8415020 -180864534 + L2 LINE L2 2721 2977 -337 196 353 49 20 chr6 8415139 8415241 -180864313 + L2 LINE L2 3208 3312 -1 651 199 55 7 chr6 8415595 8415741 -180863813 - MIR SINE MIR -10 252 100 239 156 22 0 chr6 8416450 8416495 -180863059 + L2 LINE L2 3268 3313 0 2197 140 0 0 chr6 8416563 8416894 -180862660 + AluSx SINE Alu 1 312 0 854 156 64 64 chr6 8416919 8417092 -180862462 + FRAM SINE Alu 1 171 -5 244 246 0 0 chr6 8417095 8417152 -180862402 + A-rich Low_complexity Low_complexity 1 57 0 812 289 138 29 chr6 8417487 8417836 -180861718 - MLT1J2 LTR MaLR 0 450 64 501 296 74 16 chr6 8417870 8418059 -180861495 + LTR33 LTR ERVL 26 225 -296 325 184 23 58 chr6 8418063 8418150 -180861404 + LTR52 LTR ERVL 9 92 -329 301 247 52 58 chr6 8418220 8418374 -180861180 + LTR52 LTR ERVL 269 421 0 448 307 43 0 chr6 8418402 8418565 -180860989 + LTR33 LTR ERVL 350 519 -2 1992 125 3 38 chr6 8418928 8419247 -180860307 - AluSx SINE Alu -4 308 1 398 298 87 6 chr6 8420042 8420203 -180859351 + L3 LINE CR1 1337 1510 -67 244 225 34 56 chr6 8420287 8420376 -180859178 - L1MC5 LINE L1 -37 7924 7838 338 119 104 0 chr6 8420488 8420555 -180858999 + L1M4 LINE L1 5721 5794 -390 2456 61 0 0 chr6 8420572 8420866 -180858688 - AluY SINE Alu -17 294 1 485 298 178 24 chr6 8421288 8421808 -180857746 - L2 LINE L2 -123 3190 2585 391 284 81 49 chr6 8421810 8422095 -180857459 - MLT1J LTR MaLR -2 509 216 1198 236 119 6 chr6 8422270 8422588 -180856966 + MLT1J LTR MaLR 33 386 -125 1160 148 51 37 chr6 8422814 8422927 -180856627 + MER30 DNA MER1_type 11 130 -100 2419 74 0 13 chr6 8422927 8423238 -180856316 + AluY SINE Alu 1 307 -4 1160 148 51 37 chr6 8423238 8423340 -180856214 + MER30 DNA MER1_type 130 229 -1 2127 125 0 7 chr6 8423621 8423917 -180855637 - AluSx SINE Alu -18 294 1 202 365 66 15 chr6 8423923 8424060 -180855494 + L2 LINE L2 3146 3289 -24 1895 155 3 7 chr6 8424079 8424375 -180855179 - AluJb SINE Alu -17 295 1 440 272 103 82 chr6 8424561 8424660 -180854894 - MLT1G1 LTR MaLR -406 189 83 2235 105 26 0 chr6 8424660 8424965 -180854589 + AluSq SINE Alu 1 313 0 440 272 103 82 chr6 8424965 8425049 -180854505 - MLT1G1 LTR MaLR -512 83 2 306 276 72 125 chr6 8425051 8425355 -180854199 - MLT1G1-int LTR MaLR -1 1370 1083 2114 125 3 0 chr6 8425697 8425992 -180853562 + AluSx SINE Alu 1 296 -16 337 220 165 0 chr6 8426417 8426526 -180853028 + L1MA10 LINE L1 6201 6327 -7 37 0 0 0 chr6 8427100 8427137 -180852417 + AT_rich Low_complexity Low_complexity 1 37 0 563 218 17 165 chr6 8427199 8427389 -180852165 - MLT1G1-int LTR MaLR -770 601 384 2522 129 114 8 chr6 8427389 8427776 -180851778 - MSTA LTR MaLR 0 428 1 563 218 17 165 chr6 8427776 8427802 -180851752 - MLT1G1-int LTR MaLR -987 384 356 1795 181 0 7 chr6 8427802 8428101 -180851453 - AluJb SINE Alu -4 308 12 563 218 17 165 chr6 8428101 8428146 -180851408 - MLT1G1-int LTR MaLR -1015 356 306 2590 160 19 16 chr6 8428146 8428506 -180851048 + MSTB1 LTR MaLR 1 364 -68 2057 92 27 37 chr6 8428506 8428800 -180850754 - AluSx SINE Alu -21 291 1 2590 160 19 16 chr6 8428800 8428870 -180850684 + MSTB1 LTR MaLR 364 432 0 563 218 17 165 chr6 8428870 8429024 -180850530 - MLT1G1-int LTR MaLR -1065 306 246 236 238 0 16 chr6 8429057 8429120 -180850434 - MLT1G1-int LTR MaLR -1309 62 1 2090 111 14 0 chr6 8429126 8429415 -180850139 - AluSq SINE Alu -20 293 1 1989 111 21 17 chr6 8430527 8430816 -180848738 + AluSp SINE Alu 1 290 -23 811 265 88 8 chr6 8430833 8431082 -180848472 - L1ME3A LINE L1 -8 6162 5894 * 915 226 39 11 chr6 8431075 8431093 -180848461 - L1ME2 LINE L1 -168 5996 5980 861 151 26 0 chr6 8431093 8431245 -180848309 - L1MA10 LINE L1 -2 6332 6177 915 226 39 11 chr6 8431245 8431505 -180848049 - L1ME2 LINE L1 -184 5980 5754 344 183 0 0 chr6 8431505 8431565 -180847989 - L1ME3A LINE L1 -262 5908 5849 370 282 149 51 chr6 8431863 8432118 -180847436 + MLT1I LTR MaLR 63 342 -67 1732 165 6 22 chr6 8432232 8432548 -180847006 - AluJo SINE Alu 0 312 2 4856 141 24 3 chr6 8432705 8433472 -180846082 + L1PA16 LINE L1 5363 6145 -21 778 178 0 0 chr6 8433529 8433647 -180845907 + FLAM_A SINE Alu 6 123 -19 1975 167 3 0 chr6 8433841 8434146 -180845408 + AluJb SINE Alu 1 306 -6 2337 89 3 7 chr6 8434718 8435020 -180844534 - AluSg SINE Alu -9 301 1 684 245 26 49 chr6 8435064 8435329 -180844225 + MIR SINE MIR 2 260 -2 1688 92 0 0 chr6 8435659 8435876 -180843678 - AluY SINE Alu -11 300 84 276 149 0 0 chr6 8435908 8435955 -180843599 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 273 327 75 9 chr6 8435957 8436064 -180843490 - L2 LINE L2 -5 3308 3195 1805 102 94 23 chr6 8436814 8437107 -180842447 + AluSx SINE Alu 1 312 0 201 286 82 0 chr6 8437410 8437459 -180842095 + L2 LINE L2 3207 3259 -13 423 236 0 81 chr6 8437487 8437610 -180841944 - MER69 DNA AcHobo 0 2526 2414 2015 168 8 46 chr6 8438887 8439279 -180840275 - MLT1B LTR MaLR -6 384 8 1879 144 0 3 chr6 8439368 8439652 -180839902 - AluJb SINE Alu -3 309 27 1747 146 4 0 chr6 8439912 8440166 -180839388 - AluSx SINE Alu -57 255 1 1992 127 51 7 chr6 8440534 8440826 -180838728 - AluSx SINE Alu -7 305 1 467 144 152 30 chr6 8440913 8441045 -180838509 - L2 LINE L2 -8 3305 3158 268 141 109 47 chr6 8441052 8441116 -180838438 + HsTC2 DNA Tc2 3 70 -1828 1827 224 50 42 chr6 8441150 8441527 -180838027 + HsTC2 DNA Tc2 1274 1659 -239 2334 94 3 0 chr6 8441527 8441835 -180837719 - AluSq SINE Alu -4 309 1 1827 224 50 42 chr6 8441835 8442077 -180837477 + HsTC2 DNA Tc2 1659 1898 0 331 339 5 16 chr6 8442184 8442323 -180837231 + MIR SINE MIR 30 144 -64 200 286 14 14 chr6 8442385 8442455 -180837099 - L2 LINE L2 -49 3264 3195 2009 146 13 7 chr6 8442850 8443158 -180836396 - AluSx SINE Alu -2 310 1 383 261 45 18 chr6 8444558 8444669 -180834885 - MIR SINE MIR -92 170 57 42 65 0 0 chr6 8444677 8444754 -180834800 + AT_rich Low_complexity Low_complexity 1 77 0 2268 83 0 0 chr6 8444832 8445108 -180834446 - AluSc SINE Alu -14 295 20 184 315 102 39 chr6 8445188 8445315 -180834239 + MIR SINE MIR 13 147 -115 2053 139 0 10 chr6 8446376 8446686 -180832868 + AluJb SINE Alu 6 312 0 22 70 0 0 chr6 8447105 8447148 -180832406 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr6 8447177 8447212 -180832342 + AT_rich Low_complexity Low_complexity 1 35 0 317 227 0 13 chr6 8447394 8447469 -180832085 + MLT1I LTR MaLR 327 400 -9 1912 147 10 7 chr6 8448988 8449295 -180830259 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 8449411 8449432 -180830122 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 8449432 8449453 -180830101 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 2219 98 0 3 chr6 8450230 8450526 -180829028 - AluSq SINE Alu -18 295 1 342 61 0 0 chr6 8450806 8450855 -180828699 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 281 316 105 0 chr6 8450922 8451055 -180828499 + MIR SINE MIR 110 256 -6 189 162 0 0 chr6 8451153 8451173 -180828381 + GA-rich Low_complexity Low_complexity 2 24 -14 2261 117 0 3 chr6 8451173 8451473 -180828081 + AluSq SINE Alu 1 299 -14 189 162 0 0 chr6 8451473 8451489 -180828065 + GA-rich Low_complexity Low_complexity 23 38 0 338 283 71 0 chr6 8451625 8451738 -180827816 - L2 LINE L2 -16 3256 3136 225 65 0 0 chr6 8453138 8453169 -180826385 + (CAT)n Simple_repeat Simple_repeat 2 32 0 308 231 15 92 chr6 8454222 8454352 -180825202 + MIR SINE MIR 84 203 -59 180 0 0 0 chr6 8454352 8454372 -180825182 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 274 318 130 7 chr6 8454431 8454585 -180824969 - MIR3 SINE MIR -32 176 4 2315 159 20 54 chr6 8455393 8455682 -180823872 - MSTB LTR MaLR 0 426 156 2247 96 10 3 chr6 8455682 8455975 -180823579 - AluSp SINE Alu -18 295 1 2315 159 20 54 chr6 8455975 8456126 -180823428 - MSTB LTR MaLR -270 156 1 1604 194 169 54 chr6 8457409 8457448 -180822106 - MLT2B1 LTR ERVL 0 520 487 405 0 0 0 chr6 8457448 8457493 -180822061 + (TG)n Simple_repeat Simple_repeat 1 45 0 1604 194 169 54 chr6 8457493 8457916 -180821638 - MLT2B1 LTR ERVL -33 487 5 311 331 103 0 chr6 8458198 8458281 -180821273 + MIR3 SINE MIR 31 104 -104 1528 186 49 3 chr6 8458281 8458566 -180820988 - AluJb SINE Alu -12 300 3 311 331 103 0 chr6 8458566 8458618 -180820936 + MIR3 SINE MIR 104 180 -28 844 201 0 0 chr6 8459059 8459203 -180820351 - Tigger5 DNA MER2_type 0 2323 2180 901 179 19 13 chr6 8459204 8459360 -180820194 - Tigger5 DNA MER2_type -2166 157 1 1196 224 44 108 chr6 8460766 8461010 -180818544 + MLT1C LTR MaLR 1 198 -269 2241 125 0 0 chr6 8461010 8461322 -180818232 + AluSx SINE Alu 1 312 0 1196 224 44 108 chr6 8461322 8461576 -180817978 + MLT1C LTR MaLR 198 467 0 978 210 68 5 chr6 8461689 8461908 -180817646 + MER96B DNA MER1_type? 6 238 -179 307 256 31 39 chr6 8462741 8462870 -180816684 - L1ME1 LINE L1 -43 6123 5996 2146 240 28 9 chr6 8462916 8463490 -180816064 - L1M4 LINE L1 -1120 5262 4678 704 174 8 0 chr6 8463496 8463617 -180815937 - MER31A LTR ERV1 0 485 364 2384 239 80 3 chr6 8463617 8464370 -180815184 - L1M4c LINE L1 -2732 3650 2840 1817 166 68 91 chr6 8464416 8464964 -180814590 - LTR49 LTR ERV1 -49 546 12 3782 251 36 29 chr6 8464971 8465610 -180813944 - L1M4c LINE L1 -3531 2851 2218 2072 143 10 0 chr6 8465610 8465917 -180813637 - AluSg SINE Alu 0 310 1 3782 251 36 29 chr6 8465917 8467000 -180812554 - L1M4c LINE L1 -4164 2218 1023 1783 175 0 3 chr6 8467638 8467954 -180811600 - AluJb SINE Alu 0 315 1 2717 113 40 38 chr6 8468317 8468740 -180810814 - MSTA LTR MaLR -4 424 1 2505 77 0 0 chr6 8468851 8469150 -180810404 - AluSc SINE Alu -10 299 1 221 316 79 82 chr6 8469224 8469553 -180810001 - L2 LINE L2 0 3272 2945 301 340 7 44 chr6 8469802 8469921 -180809633 - MIR SINE MIR -67 141 42 2237 37 67 0 chr6 8469921 8470190 -180809364 - AluY SINE Alu -15 296 10 301 340 7 44 chr6 8470190 8470229 -180809325 - MIR SINE MIR -166 42 3 2333 97 3 7 chr6 8470282 8470592 -180808962 - AluSx SINE Alu -3 309 1 4276 132 97 128 chr6 8470842 8472065 -180807489 + pTR5 LTR ERV1 738 2219 -219 2931 13 0 0 chr6 8472065 8472383 -180807171 + AluYb8 SINE Alu 1 318 0 4276 132 97 128 chr6 8472383 8472597 -180806957 + pTR5 LTR ERV1 2219 2438 0 243 314 23 12 chr6 8472670 8472756 -180806798 - MIR SINE MIR -108 154 68 240 86 0 0 chr6 8473288 8473323 -180806231 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 213 213 66 33 chr6 8473472 8473533 -180806021 - L2 LINE L2 0 3313 3251 1446 242 114 39 chr6 8474432 8474895 -180804659 - MLT1D LTR MaLR -7 498 1 445 304 59 42 chr6 8474894 8475131 -180804423 + MER112 DNA MER1_type 2 242 -18 * 210 371 0 53 chr6 8476328 8476479 -180803075 + MIR3 SINE MIR 16 158 -50 2414 64 0 3 chr6 8476487 8476784 -180802770 - AluY SINE Alu -14 297 2 2604 65 0 0 chr6 8477899 8478206 -180801348 + AluY SINE Alu 1 307 -4 5831 147 83 53 chr6 8478650 8479557 -180799997 - Tigger3b DNA MER2_type -1797 1231 279 2285 102 3 0 chr6 8479557 8479861 -180799693 + AluSq SINE Alu 1 305 -8 5831 147 83 53 chr6 8479861 8480139 -180799415 - Tigger3b DNA MER2_type -2749 279 11 2187 102 0 22 chr6 8480140 8480453 -180799101 + AluSx SINE Alu 1 306 -6 204 97 0 0 chr6 8480820 8480851 -180798703 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1101 272 83 23 chr6 8480853 8481448 -180798106 - L2 LINE L2 -10 3303 2679 1320 256 85 67 chr6 8481694 8482163 -180797391 - L1ME3A LINE L1 -116 6054 5595 1512 183 29 26 chr6 8482163 8482474 -180797080 - AluJo SINE Alu 0 312 1 1320 256 85 67 chr6 8482474 8483078 -180796476 - L1ME3A LINE L1 -575 5595 4962 336 204 9 19 chr6 8483083 8483191 -180796363 + CT-rich Low_complexity Low_complexity 3 109 0 515 214 172 0 chr6 8483340 8483485 -180796069 - MER5B DNA MER1_type 0 178 9 603 268 13 0 chr6 8483529 8483686 -180795868 - MER53 DNA DNA -1 188 30 316 135 27 0 chr6 8483712 8483786 -180795768 + (TA)n Simple_repeat Simple_repeat 1 76 0 1670 115 93 22 chr6 8483786 8484055 -180795499 - AluSx SINE Alu -24 288 1 393 276 58 63 chr6 8485044 8485218 -180794336 - MIR SINE MIR -70 192 20 1973 148 0 10 chr6 8485433 8485730 -180793824 - AluJb SINE Alu -16 296 3 364 297 59 109 chr6 8486021 8486277 -180793277 - L2 LINE L2 0 3272 3030 280 309 140 11 chr6 8487569 8487747 -180791807 - MIR SINE MIR -6 256 56 530 208 10 10 chr6 8487966 8488177 -180791377 + CT-rich Low_complexity Low_complexity 1 211 0 183 327 57 86 chr6 8488223 8488572 -180790982 - L2 LINE L2 -61 3211 2873 2317 180 46 58 chr6 8488952 8489518 -180790036 - MER89 LTR ERV1 0 559 1 242 211 0 14 chr6 8491596 8491604 -180787950 + (TA)n Simple_repeat Simple_repeat 1 8 -62 888 109 8 0 chr6 8491604 8491723 -180787831 - L1PA11 LINE L1 -2 6172 6053 242 211 0 14 chr6 8491723 8491785 -180787769 + (TA)n Simple_repeat Simple_repeat 8 70 0 2501 26 0 48 chr6 8491786 8492097 -180787457 - AluY SINE Alu -15 296 1 6045 107 4 13 chr6 8492100 8492778 -180786776 - L1PA11 LINE L1 -110 6064 5381 2530 68 0 0 chr6 8492778 8493089 -180786465 - AluY SINE Alu 0 311 1 6045 107 4 13 chr6 8493089 8493848 -180785706 - L1PA11 LINE L1 -793 5381 4639 23 33 0 0 chr6 8493848 8493878 -180785676 + AT_rich Low_complexity Low_complexity 1 30 0 277 300 0 22 chr6 8495146 8495236 -180784318 + GA-rich Low_complexity Low_complexity 2 89 0 1946 158 37 23 chr6 8495567 8495921 -180783633 - MLT1A1 LTR MaLR -6 359 1 30 45 0 0 chr6 8496578 8496622 -180782932 + AT_rich Low_complexity Low_complexity 1 44 0 2185 117 0 7 chr6 8496762 8497060 -180782494 - AluSx SINE Alu -16 296 1 2246 218 16 20 chr6 8497069 8497619 -180781935 - L1MB8 LINE L1 -73 6105 5558 222 62 0 0 chr6 8497622 8497654 -180781900 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1967 140 0 0 chr6 8497654 8497933 -180781621 - AluSx SINE Alu -33 279 1 395 272 7 0 chr6 8499388 8499535 -180780019 + GA-rich Low_complexity Low_complexity 4 151 0 2595 126 15 106 chr6 8499800 8500032 -180779522 + MER4B LTR ERV1 1 253 -526 2363 98 23 0 chr6 8500032 8500337 -180779217 + AluSx SINE Alu 1 312 0 2595 126 15 106 chr6 8500337 8500779 -180778775 + MER4B LTR ERV1 253 779 0 21 36 0 0 chr6 8502954 8502982 -180776572 + AT_rich Low_complexity Low_complexity 1 28 0 184 255 20 20 chr6 8503127 8503178 -180776376 + MIR SINE MIR 46 96 -166 2455 123 27 11 chr6 8503625 8503992 -180775562 - L1PB3 LINE L1 0 6154 5782 283 141 35 24 chr6 8503999 8504084 -180775470 + (TA)n Simple_repeat Simple_repeat 1 86 0 6436 137 16 1 chr6 8504129 8505530 -180774024 - L1PB2 LINE L1 -3 6148 4724 499 120 27 0 chr6 8505528 8505603 -180773951 - L1PB3 LINE L1 -366 5785 5709 * 180 0 0 0 chr6 8505739 8505759 -180773795 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1956 137 0 0 chr6 8505759 8506037 -180773517 - AluSg SINE Alu -32 278 1 730 193 37 7 chr6 8506068 8506203 -180773351 - Tigger7 DNA MER2_type -566 139 1 3158 116 67 28 chr6 8506206 8506740 -180772814 + L1MA8 LINE L1 5734 6288 -3 916 229 76 5 chr6 8507371 8507581 -180771973 - MER89 LTR ERV1 0 559 335 1798 210 14 25 chr6 8507583 8507949 -180771605 + MLT1A1 LTR MaLR 4 365 0 1456 208 38 29 chr6 8507949 8508283 -180771271 - MER89 LTR ERV1 -222 337 1 225 0 0 0 chr6 8509564 8509589 -180769965 + (T)n Simple_repeat Simple_repeat 1 25 0 2174 105 7 3 chr6 8509925 8510221 -180769333 + AluSc SINE Alu 1 297 -12 1854 97 0 8 chr6 8510739 8510987 -180768567 - AluSg SINE Alu -5 305 60 180 290 103 90 chr6 8511060 8511370 -180768184 + L2 LINE L2 2379 2692 -622 202 368 0 11 chr6 8511519 8511614 -180767940 + MER5B DNA MER1_type 62 155 -23 217 313 17 26 chr6 8512400 8512515 -180767039 + GA-rich Low_complexity Low_complexity 5 118 0 192 40 0 0 chr6 8512599 8512624 -180766930 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1753 147 6 45 chr6 8512624 8512937 -180766617 - AluJo SINE Alu -11 301 1 257 163 0 0 chr6 8516212 8516255 -180763299 + L2 LINE L2 3258 3300 -13 235 292 96 18 chr6 8516512 8516701 -180762853 + MIR SINE MIR 3 207 -55 1758 114 19 19 chr6 8517331 8517594 -180761960 - AluSx SINE Alu -8 304 42 23 0 0 0 chr6 8519003 8519026 -180760528 + AT_rich Low_complexity Low_complexity 1 23 0 1749 171 3 7 chr6 8519052 8519345 -180760209 - AluJb SINE Alu -20 292 1 283 284 23 11 chr6 8519684 8519772 -180759782 - MER5B DNA MER1_type -86 92 4 1976 176 42 3 chr6 8519914 8520249 -180759305 - MER7A DNA MER2_type 0 346 1 265 298 0 21 chr6 8520571 8520665 -180758889 - L1MC5 LINE L1 -62 7899 7808 21 0 0 0 chr6 8521665 8521686 -180757868 + AT_rich Low_complexity Low_complexity 1 21 0 413 254 0 45 chr6 8521779 8521889 -180757665 + L1ME1 LINE L1 6035 6139 -27 706 162 0 0 chr6 8522139 8522256 -180757298 - AluJo SINE Alu -3 309 193 818 165 0 0 chr6 8522272 8522393 -180757161 - AluJo SINE Alu -187 125 5 7217 5 0 0 chr6 8523361 8524114 -180755440 + L1PA2 LINE L1 5403 6155 0 21 36 0 0 chr6 8524147 8524175 -180755379 + AT_rich Low_complexity Low_complexity 1 28 0 1548 86 10 0 chr6 8524628 8524825 -180754729 - AluY SINE Alu -15 296 98 428 341 24 12 chr6 8525231 8525395 -180754159 - MIR3 SINE MIR -5 203 38 1905 147 0 0 chr6 8526561 8526840 -180752714 + AluJb SINE Alu 5 283 -29 234 0 0 0 chr6 8527282 8527308 -180752246 + (A)n Simple_repeat Simple_repeat 1 26 0 1917 137 29 0 chr6 8528026 8528304 -180751250 - AluJo SINE Alu -26 286 1 1375 178 22 0 chr6 8528469 8528700 -180750854 - AluJo SINE Alu -76 236 1 363 64 0 0 chr6 8529453 8529500 -180750054 - MADE1 DNA Mariner 0 80 34 2101 114 4 0 chr6 8529504 8529832 -180749722 + AluSx SINE Alu 1 329 0 2271 170 83 11 chr6 8529839 8530275 -180749279 + MLT1C LTR MaLR 1 467 0 969 168 21 26 chr6 8530335 8530525 -180749029 - MER53 DNA DNA 0 189 1 1937 179 55 60 chr6 8530703 8531275 -180748279 + MLT2A2 LTR ERVL 1 554 0 248 204 0 0 chr6 8531278 8531322 -180748232 - MER2 DNA MER2_type -21 324 281 21 0 0 0 chr6 8531333 8531354 -180748200 + AT_rich Low_complexity Low_complexity 1 21 0 5786 164 65 45 chr6 8531392 8531615 -180747939 - Tigger3b DNA MER2_type -1797 1231 1014 354 23 0 0 chr6 8531615 8531658 -180747896 + (TG)n Simple_repeat Simple_repeat 1 43 0 1957 114 7 21 chr6 8531658 8531938 -180747616 - AluSc SINE Alu -33 276 1 5786 164 65 45 chr6 8531938 8532259 -180747295 - Tigger3b DNA MER2_type -2014 1014 701 2249 118 0 3 chr6 8532259 8532564 -180746990 - AluSq SINE Alu -9 304 1 5786 164 65 45 chr6 8532564 8532853 -180746701 - Tigger3b DNA MER2_type -2327 701 419 2082 133 30 0 chr6 8532853 8533153 -180746401 - AluSx SINE Alu -3 309 1 5786 164 65 45 chr6 8533153 8533292 -180746262 - Tigger3b DNA MER2_type -2609 419 284 1585 58 0 0 chr6 8533292 8533512 -180746042 - AluY SINE Alu 0 313 94 5786 164 65 45 chr6 8533512 8533740 -180745814 - Tigger3b DNA MER2_type -2744 284 1 598 103 32 142 chr6 8533740 8533885 -180745669 - MER2 DNA MER2_type -215 130 1 584 216 0 0 chr6 8533908 8534024 -180745530 + MIR3 SINE MIR 67 182 -26 2851 10 0 0 chr6 8534392 8534700 -180744854 - AluYb8 SINE Alu -10 308 1 2280 109 0 0 chr6 8535049 8535352 -180744202 - AluSx SINE Alu -9 303 1 635 183 30 98 chr6 8535464 8535628 -180743926 + AluJb SINE Alu 129 281 -31 1511 134 4 4 chr6 8535779 8536010 -180743544 + AluJo SINE Alu 1 231 -81 1604 185 20 10 chr6 8537515 8537813 -180741741 + AluJo SINE Alu 1 301 -11 218 228 18 0 chr6 8537827 8537884 -180741670 - MIR SINE MIR -55 207 150 2313 113 3 0 chr6 8537900 8538211 -180741343 + AluSx SINE Alu 1 312 0 472 271 60 13 chr6 8538396 8538547 -180741007 - MIR SINE MIR -57 205 48 629 247 78 18 chr6 8538805 8538971 -180740583 + MER5A DNA MER1_type 13 188 -1 1872 150 35 0 chr6 8539038 8539325 -180740229 - AluJb SINE Alu -11 301 5 188 404 10 10 chr6 8540042 8540146 -180739408 - MIR SINE MIR -65 143 40 248 276 164 9 chr6 8540193 8540309 -180739245 + MER5A DNA MER1_type 6 139 -50 2346 113 0 0 chr6 8540323 8540625 -180738929 + AluSq SINE Alu 1 302 -11 802 219 44 11 chr6 8540757 8540940 -180738614 + MER5A DNA MER1_type 1 189 0 232 318 61 0 chr6 8541688 8541754 -180737800 - L2 LINE L2 -55 3217 3148 1136 297 107 9 chr6 8541882 8542340 -180737214 - LTR33A LTR ERVL -14 509 7 23 0 0 0 chr6 8542581 8542604 -180736950 + AT_rich Low_complexity Low_complexity 1 23 0 968 70 0 0 chr6 8542726 8542887 -180736667 + AluSg/x SINE Alu 172 332 0 574 273 58 73 chr6 8543145 8543320 -180736234 - MER5C DNA MER1_type -54 270 99 2084 139 0 3 chr6 8543320 8543630 -180735924 + AluSx SINE Alu 1 309 -3 574 273 58 73 chr6 8543630 8543714 -180735840 - MER5C DNA MER1_type -225 99 15 2271 108 0 0 chr6 8543939 8544235 -180735319 - AluSq SINE Alu -17 296 1 276 53 0 0 chr6 8544689 8544727 -180734827 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 277 15 7 chr6 8546653 8546790 -180732764 + MIR3 SINE MIR 29 166 -42 219 69 0 0 chr6 8549057 8549086 -180730468 + (A)n Simple_repeat Simple_repeat 1 29 0 1604 196 86 65 chr6 8549567 8550077 -180729477 + LTR55 LTR ERV 21 541 -7 1725 109 79 78 chr6 8550227 8550664 -180728890 + LTR64 LTR ERVK 1 499 -59 1896 155 0 16 chr6 8550870 8551180 -180728374 - AluJo SINE Alu -3 309 5 1811 172 0 10 chr6 8551189 8551486 -180728068 - AluJo SINE Alu -18 294 1 380 266 21 0 chr6 8551968 8552062 -180727492 - MER5A DNA MER1_type -85 104 9 1146 220 128 90 chr6 8552320 8552889 -180726665 + MLT1G1 LTR MaLR 2 592 -3 7988 32 0 0 chr6 8554533 8556064 -180723490 - L1PA4 LINE L1 -4 6151 4623 253 93 37 0 chr6 8556192 8556246 -180723308 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 208 218 0 36 chr6 8557009 8557064 -180722490 - L2 LINE L2 0 3313 3261 817 301 18 11 chr6 8557617 8557903 -180721651 + L1ME LINE L1 16 303 -5767 915 248 66 33 chr6 8557908 8558295 -180721259 + L1ME LINE L1 726 1163 -4982 2575 272 65 26 chr6 8558308 8559500 -180720054 + L1ME LINE L1 1261 2543 -3537 2387 174 69 21 chr6 8559500 8559936 -180719618 + MSTB2 LTR MaLR 1 457 0 2575 272 65 26 chr6 8559936 8560377 -180719177 + L1ME LINE L1 2543 2965 -3115 782 200 0 0 chr6 8560393 8560513 -180719041 + FLAM_C SINE Alu 2 121 -22 809 117 45 16 chr6 8560523 8561143 -180718411 + (TA)n Simple_repeat Simple_repeat 1 637 0 430 244 29 96 chr6 8561144 8561353 -180718201 + L1M4 LINE L1 4647 4841 -1305 409 165 25 0 chr6 8561351 8561430 -180718124 + L1MC4 LINE L1 7962 8042 0 * 523 304 88 20 chr6 8561980 8562230 -180717324 + LTR16C LTR ERVL 225 491 0 422 261 152 62 chr6 8562235 8562763 -180716791 + L1ME LINE L1 2860 3434 -2646 254 350 44 37 chr6 8562952 8563246 -180716308 + L1ME LINE L1 3915 4210 -1870 422 286 111 78 chr6 8563259 8563450 -180716104 - MLT1J2 LTR MaLR -3 447 264 652 193 64 150 chr6 8563450 8563683 -180715871 - MER58C DNA MER1_type -2 213 1 422 286 111 78 chr6 8563683 8563889 -180715665 - MLT1J2 LTR MaLR -186 264 37 28 0 0 0 chr6 8563922 8563950 -180715604 + AT_rich Low_complexity Low_complexity 1 28 0 310 298 35 43 chr6 8564093 8564234 -180715320 + L1ME LINE L1 4401 4540 -1540 1926 152 0 7 chr6 8564235 8564525 -180715029 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr6 8564655 8564677 -180714877 + AT_rich Low_complexity Low_complexity 1 22 0 242 278 97 16 chr6 8564779 8564902 -180714652 + MIR SINE MIR 34 171 -81 273 222 0 0 chr6 8565070 8565133 -180714421 + GA-rich Low_complexity Low_complexity 2 64 0 288 274 51 33 chr6 8565196 8565321 -180714233 + MIR SINE MIR 35 164 -72 519 250 48 48 chr6 8565335 8565437 -180714117 - MIR SINE MIR 0 262 161 228 67 0 0 chr6 8565437 8565467 -180714087 + (CAT)n Simple_repeat Simple_repeat 1 30 0 519 250 48 48 chr6 8565467 8565572 -180713982 - MIR SINE MIR -100 162 55 2230 64 7 3 chr6 8565655 8565971 -180713583 + AluY SINE Alu 1 317 0 220 280 0 0 chr6 8566128 8566178 -180713376 + MIR SINE MIR 201 250 -12 227 268 12 24 chr6 8566195 8566277 -180713277 + L2 LINE L2 3192 3272 0 186 143 0 0 chr6 8567182 8567217 -180712337 + (GA)n Simple_repeat Simple_repeat 1 35 0 2130 111 0 4 chr6 8568218 8568530 -180711024 - AluSc SINE Alu 0 311 1 1585 192 47 25 chr6 8569414 8569815 -180709739 - L1MDb LINE L1 -5197 1212 803 902 126 35 0 chr6 8569819 8569993 -180709561 + CT-rich Low_complexity Low_complexity 1 180 0 303 53 0 0 chr6 8569993 8570031 -180709523 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 2010 128 13 3 chr6 8570037 8570342 -180709212 - AluSx SINE Alu -4 308 1 1826 205 82 45 chr6 8570345 8570978 -180708576 - L1MDb LINE L1 -5595 814 27 369 323 51 31 chr6 8571689 8571884 -180707670 + L3 LINE CR1 1096 1294 -283 229 250 78 16 chr6 8571893 8571957 -180707597 - MER5A DNA MER1_type -108 81 14 2401 105 0 0 chr6 8571992 8572298 -180707256 - AluSq SINE Alu -7 306 1 228 204 8 45 chr6 8572385 8572517 -180707037 + GA-rich Low_complexity Low_complexity 4 130 0 700 238 58 0 chr6 8572953 8573125 -180706429 - MER5A DNA MER1_type 0 189 8 264 358 104 31 chr6 8573578 8573937 -180705617 + L2 LINE L2 2722 3054 -218 2132 136 3 0 chr6 8573937 8574245 -180705309 - AluSx SINE Alu -3 309 1 264 358 104 31 chr6 8574245 8574317 -180705237 + L2 LINE L2 3054 3119 -153 538 227 18 0 chr6 8574317 8574427 -180705127 - MER81 DNA DNA -2 112 1 264 358 104 31 chr6 8574427 8574491 -180705063 + L2 LINE L2 3119 3255 -17 1117 208 95 72 chr6 8575867 8576090 -180703464 - MLT1H1 LTR MaLR 0 555 318 2211 196 44 40 chr6 8576090 8576591 -180702963 + MLT1D LTR MaLR 1 503 -2 1117 208 95 72 chr6 8576591 8576756 -180702798 - MLT1H1 LTR MaLR -237 318 158 408 266 11 11 chr6 8576766 8576860 -180702694 - MLT1H1 LTR MaLR -483 107 14 2328 151 54 35 chr6 8578314 8578738 -180700816 - MSTB1 LTR MaLR 0 432 1 594 231 68 107 chr6 8579082 8579134 -180700420 - MLT1J LTR MaLR 0 511 458 1619 164 22 4 chr6 8579134 8579409 -180700145 + AluJb SINE Alu 1 280 -32 594 231 68 107 chr6 8579409 8579711 -180699843 - MLT1J LTR MaLR -53 458 171 648 211 0 0 chr6 8581290 8581404 -180698150 - AluY SINE Alu -81 230 117 213 94 0 0 chr6 8581971 8582003 -180697551 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1994 158 0 0 chr6 8582020 8582317 -180697237 - AluJb SINE Alu -15 297 1 294 276 32 83 chr6 8582697 8582914 -180696640 - L2 LINE L2 -252 3061 2856 1503 217 116 8 chr6 8583093 8583471 -180696083 + L1MA4A LINE L1 5623 6041 -262 * 1924 150 32 0 chr6 8583245 8583559 -180695995 + L1PB4 LINE L1 5810 6133 -23 620 66 0 11 chr6 8583565 8583656 -180695898 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 455 280 24 24 chr6 8583776 8583944 -180695610 - HAL1 LINE L1 -122 2385 2218 306 243 98 35 chr6 8583949 8584122 -180695432 - HAL1 LINE L1 -338 2169 1986 296 258 143 62 chr6 8584141 8584350 -180695204 - HAL1 LINE L1 -1862 645 420 351 147 40 133 chr6 8584385 8584535 -180695019 - HAL1 LINE L1 -2323 184 49 2114 94 0 69 chr6 8587715 8588035 -180691519 + AluSx SINE Alu 1 298 -14 229 279 25 13 chr6 8588461 8588540 -180691014 + L2 LINE L2 3232 3311 -2 2109 109 3 0 chr6 8588622 8588915 -180690639 - AluSx SINE Alu -18 294 1 513 225 53 64 chr6 8589049 8589236 -180690318 + pTR5 LTR ERV1 743 927 -1511 3221 144 217 60 chr6 8589537 8590251 -180689303 + LTR12 LTR ERV1 1 826 0 674 240 17 9 chr6 8590441 8590670 -180688884 - L1MB1 LINE L1 -1 6167 5879 2585 154 39 15 chr6 8590699 8591079 -180688475 + L1MB1 LINE L1 5403 5798 -370 342 67 0 0 chr6 8591079 8591124 -180688430 + (TA)n Simple_repeat Simple_repeat 2 46 0 2585 154 39 15 chr6 8591124 8591211 -180688343 + L1MB1 LINE L1 5798 5881 -287 225 319 53 53 chr6 8591213 8591326 -180688228 - MIR SINE MIR -99 163 51 410 241 0 0 chr6 8591364 8591472 -180688082 - L1M4 LINE L1 -1888 4258 4151 1634 248 21 19 chr6 8591496 8591920 -180687634 - L1M4 LINE L1 -1949 4197 3773 449 327 91 44 chr6 8592232 8592617 -180686937 + MLT1L LTR MaLR 112 514 -101 214 288 76 0 chr6 8592799 8592865 -180686689 + MER5A DNA MER1_type 115 185 -4 216 0 0 0 chr6 8593591 8593615 -180685939 + (CA)n Simple_repeat Simple_repeat 1 24 0 2127 116 3 28 chr6 8594154 8594473 -180685081 - AluSx SINE Alu -1 311 1 6439 173 34 3 chr6 8594484 8595940 -180683614 - L1MC1 LINE L1 0 6333 4812 522 0 0 0 chr6 8595940 8595998 -180683556 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6439 173 34 3 chr6 8595998 8596191 -180683363 - L1MC1 LINE L1 -1521 4812 4626 276 313 108 33 chr6 8596267 8596481 -180683073 + L2 LINE L2 1766 1995 -1319 346 313 38 15 chr6 8596713 8596844 -180682710 + L2 LINE L2 3137 3270 -2 1515 230 86 24 chr6 8597717 8598751 -180680803 - L1MB8 LINE L1 -10 6168 4944 218 291 0 0 chr6 8599296 8599351 -180680203 - L2 LINE L2 -81 3191 3137 193 244 209 0 chr6 8599771 8599857 -180679697 + MIR SINE MIR 41 144 -118 1691 178 3 22 chr6 8601263 8601577 -180677977 - AluJb SINE Alu 0 312 5 2584 164 22 22 chr6 8602956 8603413 -180676141 - LTR32 LTR ERVL 0 471 15 232 304 174 50 chr6 8604172 8604448 -180675106 + L2 LINE L2 2887 3204 -68 249 33 0 0 chr6 8604448 8604478 -180675076 + (TC)n Simple_repeat Simple_repeat 1 30 0 232 304 174 50 chr6 8604478 8604500 -180675054 + L2 LINE L2 3204 3222 -50 2000 118 29 0 chr6 8604750 8605030 -180674524 - AluSx SINE Alu -19 293 6 26 0 0 0 chr6 8605276 8605302 -180674252 + AT_rich Low_complexity Low_complexity 1 26 0 1403 121 0 0 chr6 8605321 8605503 -180674051 - AluSx SINE Alu -130 182 1 357 24 0 0 chr6 8605986 8606028 -180673526 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 2471 28 0 0 chr6 8607487 8607886 -180671668 - L1P2 LINE L1 -608 5547 5149 310 224 35 24 chr6 8608162 8608247 -180671307 + L1MC2 LINE L1 5239 5324 -822 997 185 33 63 chr6 8608259 8608529 -180671025 + L1MC3 LINE L1 6564 6825 -960 5298 62 24 1 chr6 8608629 8609287 -180670267 - LTR12 LTR ERV1 -40 674 2 2496 204 9 8 chr6 8609287 8609817 -180669737 + L1 LINE L1 4534 5064 -1082 7637 134 45 3 chr6 8609926 8611274 -180668280 - L1M1 LINE L1 -3927 3638 2233 1186 187 103 11 chr6 8611381 8611643 -180667911 + L1MC2 LINE L1 5777 6062 -282 273 77 0 0 chr6 8611658 8611697 -180667857 + L1MA3 LINE L1 6267 6305 0 489 307 62 36 chr6 8611727 8612176 -180667378 - L1MDa LINE L1 -4815 1725 1265 1528 258 13 12 chr6 8613535 8614071 -180665483 + MLT2F LTR ERVL 3 584 -79 1119 178 50 78 chr6 8614259 8614540 -180665014 + L1MB1 LINE L1 5788 6060 -108 909 122 7 7 chr6 8614554 8614702 -180664852 + AluSg/x SINE Alu 165 312 0 363 170 44 41 chr6 8614740 8614869 -180664685 + L1MB1 LINE L1 6044 6167 -1 211 292 36 36 chr6 8614878 8615015 -180664539 + MIR SINE MIR 83 219 -43 357 24 0 0 chr6 8615114 8615156 -180664398 + (CA)n Simple_repeat Simple_repeat 1 42 0 937 174 37 5 chr6 8615587 8615777 -180663777 + MLT2B1 LTR ERVL 1 196 -324 372 85 0 0 chr6 8617223 8617270 -180662284 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1995 122 59 0 chr6 8617270 8617556 -180661998 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 8617744 8617775 -180661779 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 253 0 13 chr6 8617775 8617854 -180661700 - L1MC4 LINE L1 -1343 6699 6622 703 325 25 37 chr6 8617928 8618251 -180661303 - L3 LINE CR1 -15 1562 1244 542 221 190 58 chr6 8618507 8618733 -180660821 - L2 LINE L2 0 3313 3058 422 302 17 0 chr6 8618823 8618939 -180660615 - L3 LINE CR1 -420 1157 1040 3509 188 38 17 chr6 8619242 8619892 -180659662 + L1MC3 LINE L1 7058 7726 -59 1962 165 24 126 chr6 8619892 8620353 -180659201 + MLT2D LTR ERVL 1 414 0 3509 188 38 17 chr6 8620353 8620414 -180659140 + L1MC3 LINE L1 7726 7784 -1 243 246 18 0 chr6 8622396 8622453 -180657101 + L2 LINE L2 3214 3271 -1 8343 140 33 121 chr6 8623378 8625334 -180654220 - L1MA6 LINE L1 0 6300 4517 1377 150 17 0 chr6 8625334 8625567 -180653987 + Tigger1 DNA MER2_type 2 238 -2180 8343 140 33 121 chr6 8625567 8626647 -180652907 - L1MA6 LINE L1 -1783 4517 3344 9831 110 23 1 chr6 8626647 8628792 -180650762 - L1PA8A LINE L1 -1 6445 4277 18101 152 7 24 chr6 8628894 8629237 -180650317 - L1PA8A LINE L1 -2108 4353 4006 2354 84 0 16 chr6 8629237 8629545 -180650009 - AluY SINE Alu -4 307 5 18101 152 7 24 chr6 8629545 8630038 -180649516 - L1PA8A LINE L1 -2455 4006 3506 2230 71 7 4 chr6 8630038 8630355 -180649199 + AluY SINE Alu 1 318 0 18101 152 7 24 chr6 8630355 8633883 -180645671 - L1PA8A LINE L1 -2955 3506 2 2719 184 58 11 chr6 8633882 8634534 -180645020 - L1MA6 LINE L1 -2791 3355 2673 * 29 0 0 0 chr6 8634587 8634616 -180644938 + AT_rich Low_complexity Low_complexity 1 29 0 1542 199 3 14 chr6 8634659 8634950 -180644604 + AluJo SINE Alu 1 288 -24 835 233 44 0 chr6 8634973 8635201 -180644353 + L1MD1 LINE L1 5031 5268 -878 912 172 49 0 chr6 8635247 8635413 -180644141 + FRAM SINE Alu 1 163 -13 * 3394 161 58 67 chr6 8635411 8635976 -180643578 + L1MD1 LINE L1 5284 5841 -401 2039 121 9 16 chr6 8635976 8636291 -180643263 + AluSq SINE Alu 1 313 0 3394 161 58 67 chr6 8636291 8636537 -180643017 + L1MD1 LINE L1 5841 6088 -154 371 304 36 53 chr6 8636531 8636778 -180642776 - L1MC/D LINE L1 -2226 5582 5340 * 2160 163 23 3 chr6 8638111 8638460 -180641094 - MLT1A1 LTR MaLR 0 365 10 1977 175 117 51 chr6 8639863 8640315 -180639239 + LTR44 LTR ERV1 1 482 -37 459 0 0 0 chr6 8640316 8640367 -180639187 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2667 175 119 52 chr6 8640367 8641110 -180638444 - LTR1B LTR ERV1 0 785 2 660 87 0 0 chr6 8641110 8641202 -180638352 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 1551 137 27 89 chr6 8641220 8641513 -180638041 - AluJo SINE Alu -37 275 1 244 171 0 0 chr6 8641513 8641554 -180638000 + LTR44 LTR ERV1 479 519 0 4039 207 118 30 chr6 8642378 8643528 -180636026 - Zaphod DNA AcHobo -3 4028 2741 2275 91 7 7 chr6 8643528 8643825 -180635729 - AluSg SINE Alu -13 297 1 4039 207 118 30 chr6 8643825 8644026 -180635528 - Zaphod DNA AcHobo -1290 2741 2559 1087 283 162 13 chr6 8644039 8644435 -180635119 - Zaphod DNA AcHobo -3475 556 102 2282 74 0 3 chr6 8644436 8644744 -180634810 - AluY SINE Alu 0 307 1 2147 115 3 70 chr6 8644905 8645300 -180634254 - L1PA4 LINE L1 0 6155 5804 222 91 0 0 chr6 8645348 8645381 -180634173 + (TG)n Simple_repeat Simple_repeat 1 33 0 829 224 50 0 chr6 8646110 8646289 -180633265 - MER5A DNA MER1_type 0 189 2 3553 71 9 11 chr6 8646686 8647138 -180632416 + L1PA10 LINE L1 5715 6165 -3 183 80 0 0 chr6 8649655 8649680 -180629874 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 212 180 34 11 chr6 8650090 8650179 -180629375 + (TA)n Simple_repeat Simple_repeat 2 92 0 2481 56 16 0 chr6 8650611 8650916 -180628638 + AluY SINE Alu 1 310 -1 2383 156 150 25 chr6 8651988 8652515 -180627039 - L1MB5 LINE L1 -6 6168 5576 195 296 28 14 chr6 8652664 8652735 -180626819 - MIR SINE MIR -120 142 71 1175 206 0 0 chr6 8653886 8654095 -180625459 - MER3 DNA MER1_type 0 209 1 2173 92 3 36 chr6 8654401 8654705 -180624849 - AluSq SINE Alu -19 294 1 278 370 120 25 chr6 8654713 8655364 -180624190 + L2 LINE L2 1759 2471 -843 516 208 19 0 chr6 8655364 8655470 -180624084 + MER81 DNA DNA 1 108 -6 411 38 0 0 chr6 8656115 8656168 -180623386 + (CA)n Simple_repeat Simple_repeat 2 54 0 518 329 108 30 chr6 8657003 8657511 -180622043 + L2 LINE L2 2032 2579 -735 213 279 279 13 chr6 8657513 8657739 -180621815 + L2 LINE L2 3028 3313 0 356 194 0 0 chr6 8658508 8658575 -180620979 - MIR SINE MIR 0 262 196 464 252 18 0 chr6 8659037 8659148 -180620406 - MIR SINE MIR -97 165 53 875 138 0 38 chr6 8659216 8659375 -180620179 + L1PA16 LINE L1 5913 6065 -101 393 248 67 0 chr6 8659512 8659617 -180619937 + MIR SINE MIR 150 261 -1 2059 125 7 14 chr6 8659663 8659960 -180619594 + AluSx SINE Alu 1 295 -17 399 257 117 35 chr6 8660942 8661113 -180618441 + L1ME4a LINE L1 5933 6117 -4 258 338 156 23 chr6 8661221 8661529 -180618025 + L2 LINE L2 2827 3175 -97 1876 127 167 9 chr6 8663373 8663697 -180615857 + THE1C LTR MaLR 1 375 0 11469 106 7 42 chr6 8663697 8665334 -180614220 + THE1C-int LTR MaLR 1 1580 0 2245 111 72 28 chr6 8665334 8665693 -180613861 + THE1C LTR MaLR 1 375 0 448 341 49 0 chr6 8665846 8666010 -180613544 + MIR SINE MIR 62 233 -29 505 206 89 67 chr6 8666063 8666243 -180613311 + L2 LINE L2 1605 1788 -1526 2781 68 3 3 chr6 8666289 8666628 -180612926 + L1PA6 LINE L1 5815 6153 -1 195 129 0 0 chr6 8666755 8666786 -180612768 + (CA)n Simple_repeat Simple_repeat 1 31 0 1723 271 65 52 chr6 8666987 8667659 -180611895 + L2 LINE L2 1811 2491 -823 954 227 49 0 chr6 8667659 8667862 -180611692 + MLT1F LTR MaLR 1 213 -354 1552 192 67 17 chr6 8667864 8668223 -180611331 - MLT1A2 LTR MaLR 0 374 1 1415 214 107 0 chr6 8668223 8668532 -180611022 + MLT1F LTR MaLR 199 540 -2 1295 261 177 13 chr6 8668534 8669236 -180610318 + L2 LINE L2 2487 3313 0 205 328 9 78 chr6 8669511 8669627 -180609927 + L3 LINE CR1 1431 1538 -39 2080 115 124 18 chr6 8670138 8670477 -180609077 - THE1C LTR MaLR 0 375 1 354 214 0 0 chr6 8671485 8671574 -180607980 + (CA)n Simple_repeat Simple_repeat 2 90 0 233 234 65 13 chr6 8671592 8671669 -180607885 - L2 LINE L2 -1220 2094 2014 1682 167 17 10 chr6 8671725 8672013 -180607541 + AluJo SINE Alu 3 292 -20 438 247 137 22 chr6 8672083 8672265 -180607289 + MER58C DNA MER1_type 1 203 -12 222 293 38 57 chr6 8672420 8672526 -180607028 - MER5B DNA MER1_type -12 166 63 1924 139 0 0 chr6 8672529 8672802 -180606752 - AluSx SINE Alu 0 312 40 219 200 0 0 chr6 8673006 8673046 -180606508 - L2 LINE L2 -10 3303 3264 209 108 27 0 chr6 8673152 8673189 -180606365 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 7189 52 38 0 chr6 8673388 8674609 -180604945 + L1PA6 LINE L1 4869 6154 0 612 257 138 5 chr6 8675516 8675734 -180603820 + MIR SINE MIR 16 262 0 1440 152 41 104 chr6 8676028 8676145 -180603409 + AluJo SINE Alu 1 124 -188 207 0 0 0 chr6 8676145 8676168 -180603386 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr6 8676169 8676215 -180603339 + (TA)n Simple_repeat Simple_repeat 2 47 0 1440 152 41 104 chr6 8676215 8676411 -180603143 + AluJo SINE Alu 123 296 -16 2969 199 38 5 chr6 8676437 8677039 -180602515 - L1MB7 LINE L1 -43 6141 5520 265 359 0 0 chr6 8677620 8677712 -180601842 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 251 313 0 26 chr6 8679310 8679425 -180600129 + L1MC5 LINE L1 7806 7917 -44 751 313 100 9 chr6 8679449 8679868 -180599686 + L2 LINE L2 1854 2310 -1004 2005 185 36 46 chr6 8679880 8680433 -180599121 - MLT2A2 LTR ERVL 0 554 1 479 313 171 20 chr6 8680454 8681127 -180598427 + L2 LINE L2 2335 3210 -103 198 176 0 0 chr6 8681211 8681245 -180598309 + MIR SINE MIR 217 250 -12 198 176 0 118 chr6 8681245 8681262 -180598292 + L2 LINE L2 3262 3306 -7 274 143 0 0 chr6 8682828 8682870 -180596684 + MLT1A1 LTR MaLR 2 43 -331 283 174 0 0 chr6 8682871 8682917 -180596637 + MLT1A1 LTR MaLR 158 203 -162 253 150 0 0 chr6 8682916 8682956 -180596598 + MLT1A2 LTR MaLR 166 205 -169 * 918 181 75 5 chr6 8682958 8683146 -180596408 + MLT1A2 LTR MaLR 173 373 -1 308 303 37 0 chr6 8683438 8683547 -180596007 - MIR SINE MIR -17 245 133 231 288 68 14 chr6 8683591 8683664 -180595890 - MIR SINE MIR -84 124 48 511 308 80 83 chr6 8684420 8684781 -180594773 - L2 LINE L2 -40 3232 2873 858 320 76 15 chr6 8684916 8685310 -180594244 - L2 LINE L2 -649 2665 2248 185 279 77 48 chr6 8685842 8685946 -180593608 - L2 LINE L2 -40 3273 3167 2161 127 0 13 chr6 8686291 8686607 -180592947 + AluSx SINE Alu 1 312 0 2157 83 42 10 chr6 8687230 8687518 -180592036 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr6 8688208 8688243 -180591311 + (TG)n Simple_repeat Simple_repeat 2 36 0 35 24 0 0 chr6 8688372 8688414 -180591140 + AT_rich Low_complexity Low_complexity 1 42 0 2091 136 0 16 chr6 8688487 8688803 -180590751 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr6 8689212 8689233 -180590321 + AT_rich Low_complexity Low_complexity 1 21 0 251 320 40 0 chr6 8689688 8689763 -180589791 + L2 LINE L2 3150 3227 -45 290 262 95 32 chr6 8690008 8690134 -180589420 + MER63A DNA MER1_type 69 202 -8 251 203 257 0 chr6 8691063 8691137 -180588417 + MER63 DNA MER1_type 1 719 -117 1148 171 38 79 chr6 8691137 8691453 -180588101 - MER58B DNA MER1_type 0 341 39 265 266 46 15 chr6 8691454 8691580 -180587974 + MER63 DNA MER1_type 695 1052 -8 2312 205 31 98 chr6 8691764 8692502 -180587052 - LTR8 LTR ERV1 -2 689 1 314 214 0 67 chr6 8692731 8692820 -180586734 - MER94 DNA DNA -40 94 12 367 202 32 11 chr6 8693466 8693560 -180585994 + MER103 DNA DNA 68 163 -3 1728 178 3 28 chr6 8693754 8694074 -180585480 - AluJb SINE Alu 0 312 1 388 312 159 6 chr6 8694898 8695055 -180584499 + MER5A DNA MER1_type 9 189 0 193 304 145 0 chr6 8695077 8695146 -180584408 + MIR SINE MIR 119 197 -65 1666 161 25 6 chr6 8695302 8695626 -180583928 + MLT1B LTR MaLR 1 330 -60 948 229 78 0 chr6 8695666 8695911 -180583643 + Tigger7 DNA MER2_type 1 264 -469 435 248 10 0 chr6 8695906 8696007 -180583547 + Tigger7 DNA MER2_type 2386 2487 0 * 187 235 41 85 chr6 8696520 8696625 -180582929 - MIR SINE MIR -66 196 118 1183 126 9 19 chr6 8696625 8696839 -180582715 + L1MA8 LINE L1 6076 6287 -4 187 235 41 85 chr6 8696839 8696885 -180582669 - MIR SINE MIR -144 118 71 1926 137 17 10 chr6 8699403 8699695 -180579859 + AluSx SINE Alu 1 294 -18 1091 191 70 101 chr6 8700081 8700479 -180579075 - MLT1B LTR MaLR 0 390 5 414 302 99 26 chr6 8700864 8701056 -180578498 + MIR3 SINE MIR 2 207 -1 349 322 16 71 chr6 8702497 8702680 -180576874 + MER5A DNA MER1_type 17 189 0 3070 211 49 54 chr6 8702734 8704596 -180574958 + L1ME1 LINE L1 4307 6161 -5 233 303 132 0 chr6 8705396 8705472 -180574082 - MIR SINE MIR -90 118 33 2652 119 5 121 chr6 8705939 8706023 -180573531 + MER84 LTR ERVI 1 93 -414 2298 184 44 75 chr6 8706023 8706654 -180572900 - LTR9 LTR ERV1 0 612 1 2652 119 5 121 chr6 8706654 8707141 -180572413 + MER84 LTR ERVI 93 506 -1 221 319 180 50 chr6 8707166 8707671 -180571883 + L2 LINE L2 2214 2784 -530 1190 184 104 43 chr6 8708227 8708601 -180570953 - L1MC2 LINE L1 0 6344 5948 1906 132 0 35 chr6 8708601 8708889 -180570665 - AluSx SINE Alu -11 301 24 333 295 62 62 chr6 8710876 8711103 -180568451 - L1ME3A LINE L1 -2 6164 5938 886 254 102 19 chr6 8711144 8711842 -180567712 - L1ME3A LINE L1 -218 5946 5152 * 1741 161 28 43 chr6 8711830 8712252 -180567302 - L1MD3 LINE L1 0 7995 7580 1101 285 85 34 chr6 8712447 8712954 -180566600 - L1ME3A LINE L1 -1225 4921 4350 2274 110 0 0 chr6 8712954 8713253 -180566301 - AluSx SINE Alu -13 299 1 1101 285 85 34 chr6 8713253 8713619 -180565935 - L1ME3A LINE L1 -1796 4350 4004 462 282 76 15 chr6 8713625 8713888 -180565666 - L1ME3A LINE L1 -2677 3469 3173 1731 174 3 40 chr6 8713888 8714209 -180565345 - AluJo SINE Alu -3 309 1 462 282 76 15 chr6 8714209 8714338 -180565216 - L1ME3A LINE L1 -2973 3173 3053 269 258 222 24 chr6 8714361 8714528 -180565026 - MIR SINE MIR -43 219 20 386 330 164 30 chr6 8714740 8715315 -180564239 + L2 LINE L2 1979 2630 -684 237 289 26 0 chr6 8715946 8716022 -180563532 - MIR SINE MIR -88 174 97 2031 152 11 19 chr6 8716234 8716602 -180562952 - MER47A DNA MER2_type -1 365 1 253 260 80 20 chr6 8717270 8717370 -180562184 + MIR SINE MIR 37 142 -66 255 140 0 0 chr6 8717999 8718049 -180561505 + (GA)n Simple_repeat Simple_repeat 1 50 0 421 288 77 56 chr6 8718311 8718648 -180560906 + L1MEd LINE L1 811 1154 -4965 472 265 114 30 chr6 8720181 8720347 -180559207 + MER5A DNA MER1_type 9 188 -1 322 316 120 8 chr6 8720417 8720534 -180559020 + L2 LINE L2 3143 3272 0 546 229 50 69 chr6 8720883 8721101 -180558453 + MER21B LTR ERV1 183 396 -467 601 165 106 41 chr6 8721397 8721422 -180558132 - Ricksha DNA DNA -2880 366 344 2770 72 59 56 chr6 8721422 8721461 -180558093 - MLT2A1 LTR ERVL 0 444 407 745 62 39 0 chr6 8721461 8721590 -180557964 + (TA)n Simple_repeat Simple_repeat 2 135 0 2770 72 59 56 chr6 8721590 8721993 -180557561 - MLT2A1 LTR ERVL -37 407 1 31120 59 12 3 chr6 8721993 8727551 -180552003 - HERVL-A1 LTR ERVL 0 5654 1 601 165 106 41 chr6 8721993 8722137 -180557417 - Ricksha DNA DNA -2902 344 186 * 2580 75 35 132 chr6 8727551 8728043 -180551511 - MLT2A1 LTR ERVL 0 444 1 1138 274 86 61 chr6 8728044 8728669 -180550885 - MER21B LTR ERV1 -193 670 30 198 0 0 0 chr6 8728788 8728810 -180550744 + (TTG)n Simple_repeat Simple_repeat 1 22 0 969 180 38 38 chr6 8729084 8729345 -180550209 - MLT1A1 LTR MaLR 0 365 105 1725 169 77 6 chr6 8730119 8730457 -180549097 + MLT1A1 LTR MaLR 3 364 -1 30 0 0 0 chr6 8730562 8730592 -180548962 + AT_rich Low_complexity Low_complexity 1 30 0 2166 148 3 26 chr6 8730770 8731115 -180548439 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr6 8732930 8732953 -180546601 + AT_rich Low_complexity Low_complexity 1 23 0 292 213 47 147 chr6 8733190 8733401 -180546153 - L2 LINE L2 -2 3311 3122 232 253 218 59 chr6 8733638 8733840 -180545714 + L2 LINE L2 3039 3272 0 283 250 53 0 chr6 8733937 8734013 -180545541 + MLT1J LTR MaLR 106 185 -326 691 201 107 0 chr6 8734149 8734318 -180545236 + MIR SINE MIR 2 188 -74 213 296 157 17 chr6 8734480 8734595 -180544959 + L2 LINE L2 3137 3267 -5 21 89 0 0 chr6 8735988 8736044 -180543510 + AT_rich Low_complexity Low_complexity 1 56 0 207 0 0 0 chr6 8736131 8736154 -180543400 + (CAG)n Simple_repeat Simple_repeat 1 23 0 618 301 53 22 chr6 8736166 8736392 -180543162 - MIR SINE MIR -27 235 3 258 32 0 0 chr6 8736625 8736656 -180542898 + (CA)n Simple_repeat Simple_repeat 2 32 0 346 256 75 25 chr6 8736794 8736993 -180542561 + L1M4 LINE L1 4414 4622 -1524 358 274 201 11 chr6 8737262 8737536 -180542018 + L1M4 LINE L1 4977 5302 -844 29 47 0 0 chr6 8739439 8739482 -180540072 + AT_rich Low_complexity Low_complexity 1 43 0 2140 114 0 0 chr6 8740147 8740457 -180539097 - AluSg SINE Alu 0 310 1 1075 170 0 0 chr6 8741139 8741310 -180538244 - AluSg/x SINE Alu -9 303 133 2311 73 3 27 chr6 8742414 8742714 -180536840 - AluSq SINE Alu -20 293 1 22 0 0 0 chr6 8743243 8743265 -180536289 + AT_rich Low_complexity Low_complexity 1 22 0 269 306 0 0 chr6 8743535 8743607 -180535947 + MIR3 SINE MIR 85 156 -52 1120 160 5 5 chr6 8744300 8744494 -180535060 - MER46B DNA MER2_type 0 236 43 2470 93 8 8 chr6 8744494 8744847 -180534707 + THE1A LTR MaLR 1 353 -2 4951 115 24 0 chr6 8744850 8745569 -180533985 + THE1A-int LTR MaLR 1 736 -844 560 158 185 7 chr6 8745586 8745732 -180533822 - MER46B DNA MER2_type -189 47 1 29 60 0 0 chr6 8747022 8747072 -180532482 + AT_rich Low_complexity Low_complexity 1 50 0 1939 152 30 0 chr6 8748752 8748872 -180530682 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr6 8748872 8748900 -180530654 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1939 152 30 0 chr6 8748900 8749081 -180530473 + AluJo SINE Alu 116 311 -1 584 270 110 30 chr6 8750665 8750902 -180528652 + MIR SINE MIR 2 257 -5 648 270 128 47 chr6 8750999 8751343 -180528211 + L2 LINE L2 2244 2615 -699 29 0 0 0 chr6 8752184 8752213 -180527341 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 8752317 8752338 -180527216 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 20 0 chr6 8753564 8753614 -180525940 + CT-rich Low_complexity Low_complexity 2 52 0 579 302 156 21 chr6 8755029 8755450 -180524104 + L2 LINE L2 2581 3070 -243 2150 107 4 0 chr6 8755632 8755913 -180523641 - AluSx SINE Alu -28 284 3 561 339 103 21 chr6 8756141 8756480 -180523074 + LTR16C LTR ERVL 123 489 -2 1078 113 17 0 chr6 8756861 8757038 -180522516 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 585 188 22 28 chr6 8757055 8757236 -180522318 + CT-rich Low_complexity Low_complexity 1 180 0 1814 135 57 7 chr6 8757236 8757518 -180522036 - AluSx SINE Alu -16 296 1 483 303 7 7 chr6 8757538 8757680 -180521874 + HERVL LTR ERVL 4471 4612 -1042 396 0 0 0 chr6 8757741 8757785 -180521769 + (CA)n Simple_repeat Simple_repeat 2 45 0 508 279 7 0 chr6 8757948 8758084 -180521470 - L2 LINE L2 -1208 2106 1970 700 313 36 24 chr6 8758134 8758383 -180521171 + MIR SINE MIR 9 260 -2 501 293 54 20 chr6 8758570 8758717 -180520837 - L2 LINE L2 -4 3268 3117 1508 172 19 14 chr6 8759157 8759239 -180520315 - MER33 DNA MER1_type -2261 324 244 2243 99 0 7 chr6 8759239 8759541 -180520013 + AluSx SINE Alu 1 300 -12 1508 172 19 14 chr6 8759541 8759793 -180519761 - MER33 DNA MER1_type -2341 244 1 1795 157 0 63 chr6 8759849 8760181 -180519373 + AluJb SINE Alu 1 311 -1 1854 128 75 12 chr6 8761041 8761376 -180518178 - MER46B DNA MER2_type -1 235 5 631 157 26 9 chr6 8761418 8761533 -180518021 - MLT1D LTR MaLR 0 505 389 527 216 0 0 chr6 8761534 8761636 -180517918 + FLAM_C SINE Alu 5 106 -37 206 31 0 31 chr6 8761661 8761693 -180517861 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1043 206 58 51 chr6 8761693 8761743 -180517811 - MLT1D LTR MaLR -102 403 355 4265 108 15 11 chr6 8761743 8762353 -180517201 - LTR9 LTR ERV1 0 612 1 1043 206 58 51 chr6 8762353 8762578 -180516976 - MLT1D LTR MaLR -150 355 126 4907 57 2 0 chr6 8762581 8763191 -180516363 - L1PA6 LINE L1 0 6154 5544 8064 69 3 2 chr6 8763191 8764255 -180515299 - L1PA6 LINE L1 -3382 2764 1700 4584 97 14 6 chr6 8764263 8764921 -180514633 - PABL_B LTR ERV1 0 667 5 332 307 104 43 chr6 8764974 8765137 -180514417 - LTR16C LTR ERVL -223 268 96 2102 254 11 20 chr6 8765147 8765381 -180514173 - MER90 LTR ERV1 -25 550 315 2290 96 3 3 chr6 8765381 8765684 -180513870 - AluSg SINE Alu -7 303 1 2102 254 11 20 chr6 8765684 8766004 -180513550 - MER90 LTR ERV1 -260 315 1 1955 229 44 44 chr6 8766153 8766673 -180512881 - MLT1E3 LTR MaLR 0 624 105 1872 196 35 84 chr6 8766707 8766986 -180512568 - L1ME1 LINE L1 -306 5860 5622 2337 87 6 6 chr6 8766986 8767297 -180512257 + AluSq SINE Alu 1 311 -2 1872 196 35 84 chr6 8767297 8767588 -180511966 - L1ME1 LINE L1 -544 5622 5318 509 208 0 0 chr6 8767640 8767760 -180511794 - L1MA9 LINE L1 -33 6279 6160 * 1025 202 42 21 chr6 8767753 8767961 -180511593 - L1ME1 LINE L1 -844 5302 5083 507 113 0 0 chr6 8767961 8768041 -180511513 + MADE1 DNA Mariner 1 80 0 1025 202 42 21 chr6 8768041 8768164 -180511390 - L1ME1 LINE L1 -1063 5083 4964 370 245 29 22 chr6 8768160 8768299 -180511255 - L1M1 LINE L1 -4640 2925 2786 * 32 81 0 0 chr6 8768827 8768901 -180510653 + AT_rich Low_complexity Low_complexity 1 74 0 30 59 0 0 chr6 8769062 8769113 -180510441 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr6 8770079 8770117 -180509437 + (TATG)n Simple_repeat Simple_repeat 1 38 0 186 43 0 0 chr6 8770117 8770140 -180509414 + (CA)n Simple_repeat Simple_repeat 1 23 0 2169 123 3 0 chr6 8770725 8771026 -180508528 - AluSx SINE Alu -6 306 5 200 407 0 0 chr6 8771899 8771980 -180507574 + MIR SINE MIR 16 96 -112 265 296 209 26 chr6 8772135 8772250 -180507304 + L2 LINE L2 3137 3272 0 26 0 0 0 chr6 8772743 8772769 -180506785 + AT_rich Low_complexity Low_complexity 1 26 0 409 302 259 31 chr6 8773651 8774002 -180505552 + L3 LINE CR1 1132 1562 -15 439 77 0 0 chr6 8774359 8774424 -180505130 - L1PA16 LINE L1 -4 7600 7536 14018 214 28 27 chr6 8774425 8776698 -180502856 - L1PA16 LINE L1 -105 7499 5231 2035 136 0 3 chr6 8776698 8776992 -180502562 - AluSx SINE Alu -17 295 3 14018 214 28 27 chr6 8776992 8777805 -180501749 - L1PA16 LINE L1 -2373 5231 4421 1920 159 0 0 chr6 8777805 8778113 -180501441 - AluSx SINE Alu -4 308 1 14018 214 28 27 chr6 8778113 8779315 -180500239 - L1PA16 LINE L1 -3183 4421 3198 2048 154 0 0 chr6 8779315 8779620 -180499934 - AluSx SINE Alu -7 305 1 14018 214 28 27 chr6 8779620 8780617 -180498937 - L1PA16 LINE L1 -4406 3198 2204 27 62 0 0 chr6 8781593 8781641 -180497913 + AT_rich Low_complexity Low_complexity 1 48 0 2080 152 82 14 chr6 8781695 8782058 -180497496 - L1MC2 LINE L1 -170 6174 5778 204 40 0 0 chr6 8782058 8782083 -180497471 + (GCATG)n Simple_repeat Simple_repeat 5 29 0 2080 152 82 14 chr6 8782083 8782133 -180497421 - L1MC2 LINE L1 -566 5778 5733 28 48 0 0 chr6 8782326 8782368 -180497186 + AT_rich Low_complexity Low_complexity 1 42 0 1568 206 21 45 chr6 8782521 8782895 -180496659 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr6 8782939 8782961 -180496593 + (A)n Simple_repeat Simple_repeat 1 22 0 995 328 22 9 chr6 8782961 8783278 -180496276 - L3 LINE CR1 -25 1552 1232 500 263 8 8 chr6 8783398 8783516 -180496038 - L2 LINE L2 0 3272 3155 215 433 0 0 chr6 8783572 8783706 -180495848 - L2 LINE L2 -335 2978 2845 371 123 37 49 chr6 8783721 8783802 -180495752 + L1MA5A LINE L1 6218 6297 0 1962 232 88 17 chr6 8783808 8784330 -180495224 + MLT1F1 LTR MaLR 9 567 0 483 265 123 0 chr6 8784338 8784508 -180495046 - MLT1L LTR MaLR -1 614 424 1119 275 109 73 chr6 8784693 8784899 -180494655 - L2 LINE L2 -791 2523 2326 2103 98 11 21 chr6 8784899 8785186 -180494368 - AluSq SINE Alu -27 286 3 1119 275 109 73 chr6 8785186 8785884 -180493670 - L2 LINE L2 -988 2326 1586 660 272 94 22 chr6 8785998 8786222 -180493332 + MIR SINE MIR 2 241 -21 274 346 52 52 chr6 8789596 8789732 -180489822 - L2 LINE L2 -19 3253 3118 420 277 42 43 chr6 8789812 8790025 -180489529 - MIR SINE MIR -12 250 33 344 138 15 0 chr6 8790315 8790380 -180489174 + (CA)n Simple_repeat Simple_repeat 2 67 0 1642 135 97 4 chr6 8790734 8791026 -180488528 - AluSx SINE Alu 0 316 1 1193 279 59 20 chr6 8791072 8791563 -180487991 - L1ME3A LINE L1 -280 5890 5381 183 42 0 0 chr6 8791663 8791687 -180487867 + (TTG)n Simple_repeat Simple_repeat 2 25 0 985 185 6 0 chr6 8791689 8791851 -180487703 - AluJb SINE Alu -15 297 135 1997 127 14 46 chr6 8791863 8792210 -180487344 - THE1C LTR MaLR -39 336 1 805 156 0 0 chr6 8792230 8792352 -180487202 - AluJb SINE Alu -190 122 1 1319 289 90 48 chr6 8792355 8793783 -180485771 - L1ME3A LINE L1 -865 5281 3794 1177 195 71 68 chr6 8793772 8793896 -180485658 - L1M4 LINE L1 -895 5645 5523 * 1609 157 38 11 chr6 8793896 8794183 -180485371 - AluSx SINE Alu -17 295 1 1177 195 71 68 chr6 8794183 8794483 -180485071 - L1M4 LINE L1 -1017 5523 5220 1299 276 126 31 chr6 8794597 8795141 -180484413 - MER77 LTR ERV1 -4 601 54 559 233 105 9 chr6 8795247 8795475 -180484079 - L1MEc LINE L1 -2591 3949 3700 2486 243 50 95 chr6 8795482 8795717 -180483837 - L1MEc LINE L1 -2994 3546 3302 1784 151 3 20 chr6 8795717 8796009 -180483545 + AluJb SINE Alu 5 291 -21 2486 243 50 95 chr6 8796009 8797196 -180482358 - L1MEc LINE L1 -3238 3302 2063 1853 102 14 0 chr6 8797196 8797471 -180482083 - L1MA3 LINE L1 0 6305 6027 2486 243 50 95 chr6 8797471 8797528 -180482026 - L1MEc LINE L1 -4477 2063 2005 2017 131 0 0 chr6 8797528 8797826 -180481728 + AluSp SINE Alu 1 298 -15 2486 243 50 95 chr6 8797826 8798903 -180480651 - L1MEc LINE L1 -4535 2005 1137 25 31 0 0 chr6 8798921 8798953 -180480601 + AT_rich Low_complexity Low_complexity 1 32 0 1968 248 72 22 chr6 8799095 8799647 -180479907 - L1MEc LINE L1 -5934 606 27 1336 286 54 20 chr6 8799656 8800393 -180479161 - L1MEc LINE L1 -5571 825 34 549 313 62 62 chr6 8800393 8800491 -180479063 - L1MDa LINE L1 -4455 1674 1577 411 56 0 0 chr6 8800491 8800545 -180479009 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 549 313 62 62 chr6 8800545 8800916 -180478638 - L1MDa LINE L1 -4551 1578 1205 551 276 21 72 chr6 8800926 8801314 -180478240 - L1MDa LINE L1 -4908 1211 844 5681 207 47 33 chr6 8803260 8805671 -180473883 + L1MB7 LINE L1 3730 6168 -16 21 71 0 0 chr6 8805988 8806030 -180473524 + AT_rich Low_complexity Low_complexity 1 42 0 2224 102 0 37 chr6 8807091 8807415 -180472139 + AluSx SINE Alu 1 312 0 306 310 17 9 chr6 8807552 8807668 -180471886 + MIR SINE MIR 140 256 -6 4933 54 6 2 chr6 8807680 8808310 -180471244 - L1P LINE L1 -1715 4431 3799 886 60 8 45 chr6 8808262 8808395 -180471159 + L1PA4 LINE L1 6027 6154 -1 * 537 299 50 85 chr6 8808447 8808633 -180470921 - MLT1J LTR MaLR -52 459 291 2131 116 0 0 chr6 8808633 8808925 -180470629 + AluSx SINE Alu 6 297 -15 537 299 50 85 chr6 8808925 8809102 -180470452 - MLT1J LTR MaLR -220 291 109 23 54 0 0 chr6 8809267 8809304 -180470250 + AT_rich Low_complexity Low_complexity 1 37 0 325 350 88 26 chr6 8809364 8809670 -180469884 + L1M4 LINE L1 3584 3908 -2238 244 309 90 50 chr6 8810101 8810667 -180468887 + L1M4 LINE L1 4488 5076 -1070 322 288 73 14 chr6 8810763 8810903 -180468651 + MER20 DNA MER1_type 46 195 -24 643 219 71 129 chr6 8811681 8811943 -180467611 - MLT1L LTR MaLR -27 588 236 237 276 14 7 chr6 8812010 8812093 -180467461 + GA-rich Low_complexity Low_complexity 1 146 0 375 227 277 7 chr6 8812106 8812247 -180467307 - MER5A DNA MER1_type -2 187 9 471 244 70 70 chr6 8813165 8813337 -180466217 + MER91B DNA MER1_type 11 182 -8 514 133 14 147 chr6 8813724 8813867 -180465687 + LOR1-int LTR ERV1 6830 6953 -1167 207 0 0 0 chr6 8813880 8813903 -180465651 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6678 110 20 3 chr6 8813908 8815685 -180463869 - L1PA8 LINE L1 -15 6157 4349 1981 113 3 0 chr6 8815699 8815983 -180463571 + L1P LINE L1 4707 4991 -1155 5025 104 1 1 chr6 8815991 8816702 -180462852 - L1PA8 LINE L1 -1800 4346 3636 1967 147 20 11 chr6 8816702 8817050 -180462504 + MER72 LTR ERV1 344 694 -28 22 0 0 0 chr6 8817050 8817072 -180462482 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 8817081 8817102 -180462452 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 8818320 8818341 -180461213 + AT_rich Low_complexity Low_complexity 1 21 0 2081 123 3 19 chr6 8818973 8819281 -180460273 + AluSx SINE Alu 1 303 -9 1257 316 89 12 chr6 8819349 8819833 -180459721 + MLT1G1 LTR MaLR 75 595 0 935 220 16 0 chr6 8820453 8820639 -180458915 - MER5A DNA MER1_type 0 189 1 253 286 18 0 chr6 8820748 8820804 -180458750 - L2 LINE L2 -11 3261 3205 21 36 0 0 chr6 8822267 8822295 -180457259 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr6 8822620 8822663 -180456891 + (TG)n Simple_repeat Simple_repeat 1 43 0 506 280 21 38 chr6 8824058 8824244 -180455310 + MIR SINE MIR 60 242 -20 2057 143 125 13 chr6 8825133 8825518 -180454036 + MSTA LTR MaLR 1 428 0 365 22 0 0 chr6 8825627 8825673 -180453881 - MADE1 DNA Mariner -1 79 34 22 0 0 0 chr6 8826271 8826293 -180453261 + AT_rich Low_complexity Low_complexity 1 22 0 652 216 242 5 chr6 8826304 8826498 -180453056 + MIR SINE MIR 2 241 -21 192 179 0 0 chr6 8826959 8826998 -180452556 + (CAA)n Simple_repeat Simple_repeat 1 39 0 783 298 129 51 chr6 8827526 8828077 -180451477 - L1ME4a LINE L1 -48 6073 5480 612 336 14 14 chr6 8828108 8828316 -180451238 + MIR SINE MIR 55 262 0 253 263 66 13 chr6 8828338 8828414 -180451140 - L1ME4a LINE L1 -659 5462 5383 2256 101 0 0 chr6 8828437 8828734 -180450820 - AluSg SINE Alu -13 297 1 395 310 91 5 chr6 8828786 8828973 -180450581 + LTR16A LTR ERVL 1 203 -247 1723 172 8 87 chr6 8828974 8829352 -180450202 - MER7A DNA MER2_type 0 346 1 383 253 120 90 chr6 8829352 8829584 -180449970 + LTR16A LTR ERVL 203 441 -9 252 226 12 24 chr6 8829747 8829831 -180449723 - L1MB8 LINE L1 -37 6141 6059 22 35 0 0 chr6 8830261 8830290 -180449264 + AT_rich Low_complexity Low_complexity 1 29 0 620 165 132 8 chr6 8830297 8830418 -180449136 + FRAM SINE Alu 23 158 -18 2123 125 0 7 chr6 8830711 8831016 -180448538 + AluSx SINE Alu 1 303 -9 255 215 13 25 chr6 8831021 8831100 -180448454 + L1MB8 LINE L1 6059 6136 -42 23 33 0 0 chr6 8831250 8831280 -180448274 + AT_rich Low_complexity Low_complexity 1 30 0 657 181 9 0 chr6 8832055 8832171 -180447383 + FLAM_C SINE Alu 1 117 -16 24 32 0 0 chr6 8832347 8832378 -180447176 + AT_rich Low_complexity Low_complexity 1 31 0 223 290 43 0 chr6 8834461 8834530 -180445024 - MIR SINE MIR -13 249 178 303 250 0 0 chr6 8834639 8834711 -180444843 + L1ME1 LINE L1 28 99 -6297 234 0 0 0 chr6 8834722 8834748 -180444806 + (A)n Simple_repeat Simple_repeat 1 26 0 4604 271 72 17 chr6 8834750 8837587 -180441967 + L1ME1 LINE L1 1308 4277 -1938 2373 226 104 43 chr6 8837592 8838815 -180440739 + L1ME1 LINE L1 4772 6099 -136 2203 86 0 7 chr6 8838815 8839095 -180440459 + AluSc SINE Alu 1 278 -31 253 0 0 0 chr6 8839095 8839123 -180440431 + (CAAA)n Simple_repeat Simple_repeat 1 156 0 2373 226 104 43 chr6 8839123 8839264 -180440290 + L1ME1 LINE L1 6099 6230 -5 1186 110 0 0 chr6 8839411 8839584 -180439970 + L1PA8A LINE L1 3764 3936 -2210 307 107 0 0 chr6 8839581 8839637 -180439917 + L1 LINE L1 4794 4849 -1297 * 3116 103 9 0 chr6 8839643 8840098 -180439456 + L1PA8A LINE L1 4143 4601 -1545 5879 91 16 17 chr6 8840099 8841534 -180438020 + L1PA8A LINE L1 4690 6128 -3 34 0 0 0 chr6 8841534 8841568 -180437986 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 8841723 8841745 -180437809 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 8841882 8841903 -180437651 + (T)n Simple_repeat Simple_repeat 1 21 0 247 268 24 24 chr6 8842507 8842606 -180436948 - MER5A DNA MER1_type -87 102 4 817 269 197 14 chr6 8842700 8843132 -180436422 - MLT1J LTR MaLR 0 511 1 265 311 78 11 chr6 8843185 8843275 -180436279 + MIR3 SINE MIR 63 158 -50 22 0 0 0 chr6 8844358 8844380 -180435174 + AT_rich Low_complexity Low_complexity 1 22 0 991 238 135 82 chr6 8844519 8845247 -180434307 - LTR41 LTR ERVL -7 766 1 249 327 58 29 chr6 8845473 8845577 -180433977 - MIR3 SINE MIR -36 172 66 696 273 98 35 chr6 8845584 8845870 -180433684 - L2 LINE L2 -4 3309 3006 354 123 0 0 chr6 8849365 8849422 -180430132 + (TG)n Simple_repeat Simple_repeat 1 57 0 8762 129 21 9 chr6 8849870 8851241 -180428313 + Tigger1 DNA MER2_type 31 1417 -1001 2418 151 47 7 chr6 8851238 8851662 -180427892 + Tigger1 DNA MER2_type 1977 2417 -1 * 215 286 39 39 chr6 8852275 8852352 -180427202 + MIR SINE MIR 2 78 -184 342 315 142 6 chr6 8852496 8852658 -180426896 + MLT1J2 LTR MaLR 124 307 -143 451 317 116 9 chr6 8853120 8853344 -180426210 - MIR SINE MIR -7 255 8 744 305 141 14 chr6 8854096 8854569 -180424985 - L2 LINE L2 -4 3309 2768 257 325 60 0 chr6 8854583 8854700 -180424854 - MIR SINE MIR -65 197 74 546 314 50 0 chr6 8854853 8855012 -180424542 - MIR SINE MIR -73 189 23 1994 142 3 7 chr6 8855158 8855454 -180424100 - AluSx SINE Alu -15 297 3 429 264 82 43 chr6 8855874 8856041 -180423513 - L1MEd LINE L1 -4880 1239 1055 1839 159 0 26 chr6 8856041 8856349 -180423205 - AluJo SINE Alu -12 300 1 429 264 82 43 chr6 8856349 8856461 -180423093 - L1MEd LINE L1 -5064 1055 949 1010 223 26 108 chr6 8856477 8856685 -180422869 - L1ME2 LINE L1 -8 6156 5997 2593 43 3 0 chr6 8856685 8856986 -180422568 + AluY SINE Alu 1 302 -9 1010 223 26 108 chr6 8856986 8857195 -180422359 - L1ME2 LINE L1 -167 5997 5773 877 299 121 16 chr6 8858422 8858860 -180420694 + L1ME LINE L1 740 1223 -5200 630 234 100 65 chr6 8858885 8859432 -180420122 + L1ME LINE L1 1291 1833 -4887 1586 238 26 40 chr6 8859459 8860185 -180419369 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 8860185 8860214 -180419340 + (CA)n Simple_repeat Simple_repeat 2 30 0 1586 238 26 40 chr6 8860214 8860325 -180419229 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 8860418 8860461 -180419093 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 8860677 8860702 -180418852 + AT_rich Low_complexity Low_complexity 1 25 0 4374 186 25 31 chr6 8860836 8861682 -180417872 - MER21B LTR ERV1 -22 841 1 268 298 35 94 chr6 8863999 8864170 -180415384 + L2 LINE L2 2953 3113 -159 2109 112 0 0 chr6 8864216 8864503 -180415051 + AluSg SINE Alu 21 307 -3 36 40 0 0 chr6 8864582 8864632 -180414922 + AT_rich Low_complexity Low_complexity 1 50 0 2042 128 0 28 chr6 8865216 8865537 -180414017 - AluJb SINE Alu 0 312 1 24 0 0 0 chr6 8866974 8866998 -180412556 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr6 8867801 8867831 -180411723 + (CA)n Simple_repeat Simple_repeat 2 31 0 201 219 0 0 chr6 8868156 8868197 -180411357 - L2 LINE L2 -1 3312 3272 280 381 60 16 chr6 8868349 8868598 -180410956 - L2 LINE L2 -243 3070 2811 555 293 55 30 chr6 8868794 8869122 -180410432 - L1ME4a LINE L1 -263 5858 5523 199 375 26 40 chr6 8871024 8871176 -180408378 + L2 LINE L2 2608 2757 -557 266 289 67 0 chr6 8871932 8872036 -180407518 - MIR SINE MIR -31 231 121 592 285 131 9 chr6 8873494 8873708 -180405846 - MIR SINE MIR -1 261 22 22 0 0 0 chr6 8875099 8875121 -180404433 + AT_rich Low_complexity Low_complexity 1 22 0 263 276 99 26 chr6 8875288 8875482 -180404072 - MIR SINE MIR -41 221 20 378 257 44 26 chr6 8876128 8876241 -180403313 + MIR SINE MIR 81 195 -67 500 308 114 17 chr6 8877344 8877782 -180401772 - LTR33 LTR ERVL -1 520 17 * 616 333 68 30 chr6 8877767 8878133 -180401421 - MLT1I LTR MaLR -28 381 2 2154 110 30 0 chr6 8878288 8878588 -180400966 - AluSx SINE Alu -3 309 1 676 308 164 28 chr6 8879393 8879789 -180399765 + LTR16C LTR ERVL 42 491 0 222 233 0 0 chr6 8880124 8880167 -180399387 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2056 132 49 37 chr6 8880706 8881116 -180398438 + L1MA4 LINE L1 5886 6300 0 496 320 128 5 chr6 8881765 8881968 -180397586 - MLT1J1 LTR MaLR -4 442 215 1025 342 76 35 chr6 8881973 8882579 -180396975 + L2 LINE L2 2141 2771 -543 459 229 65 65 chr6 8882566 8882767 -180396787 + L2 LINE L2 3113 3313 0 * 243 0 0 0 chr6 8883523 8883550 -180396004 + (TG)n Simple_repeat Simple_repeat 1 27 0 408 238 144 50 chr6 8883553 8883713 -180395841 + MER91B DNA MER1_type 6 180 -10 180 111 0 0 chr6 8884671 8884698 -180394856 + (T)n Simple_repeat Simple_repeat 1 27 0 7900 11 1 0 chr6 8884718 8886327 -180393227 - L1PA2 LINE L1 0 6155 4546 427 276 82 102 chr6 8886428 8886553 -180393001 - L2 LINE L2 -34 3238 3112 2357 97 0 0 chr6 8886553 8886852 -180392702 - AluSx SINE Alu -13 299 1 427 276 82 102 chr6 8886852 8887030 -180392524 - L2 LINE L2 -160 3112 2941 32 0 0 0 chr6 8887049 8887081 -180392473 + AT_rich Low_complexity Low_complexity 1 32 0 2901 126 0 0 chr6 8887081 8887510 -180392044 - L1PA15 LINE L1 -10 6155 5727 2208 120 0 0 chr6 8887510 8887811 -180391743 - AluSc SINE Alu -8 301 1 211 346 95 35 chr6 8887907 8888222 -180391332 - L2 LINE L2 -452 2862 2529 386 325 90 5 chr6 8890464 8890652 -180388902 + MIR SINE MIR 21 224 -38 23 0 0 0 chr6 8890658 8890681 -180388873 + AT_rich Low_complexity Low_complexity 1 23 0 324 194 153 51 chr6 8891663 8891761 -180387793 - MIR3 SINE MIR -18 190 83 1627 74 12 19 chr6 8892280 8892536 -180387018 - MER11A LTR ERVK 0 1266 1013 687 151 7 20 chr6 8893019 8893171 -180386383 + CT-rich Low_complexity Low_complexity 2 151 0 1771 144 102 18 chr6 8893624 8893958 -180385596 - MLT1A1 LTR MaLR 0 365 4 1615 204 0 26 chr6 8893965 8894278 -180385276 - AluJo SINE Alu -7 305 1 391 148 23 0 chr6 8894571 8894659 -180384895 + CT-rich Low_complexity Low_complexity 3 92 0 231 173 0 0 chr6 8895185 8895237 -180384317 + C-rich Low_complexity Low_complexity 4 55 0 229 352 19 19 chr6 8895361 8895466 -180384088 - MIR3 SINE MIR -11 197 93 255 281 0 0 chr6 8895682 8895746 -180383808 + (CATA)n Simple_repeat Simple_repeat 4 67 0 180 77 0 0 chr6 8895988 8896014 -180383540 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr6 8896058 8896089 -180383465 + (TG)n Simple_repeat Simple_repeat 2 32 0 2310 102 3 0 chr6 8897076 8897371 -180382183 - AluSp SINE Alu -17 296 1 21 0 0 0 chr6 8897591 8897612 -180381942 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 8898094 8898127 -180381427 + (TG)n Simple_repeat Simple_repeat 1 33 0 525 236 156 31 chr6 8898503 8898728 -180380826 + MER112 DNA MER1_type 1 253 -7 1890 148 17 10 chr6 8899214 8899512 -180380042 - AluSx SINE Alu -12 300 1 22 70 0 0 chr6 8900699 8900742 -180378812 + AT_rich Low_complexity Low_complexity 1 43 0 1438 179 54 24 chr6 8901031 8901328 -180378226 - AluJo SINE Alu -6 306 1 406 269 40 120 chr6 8902047 8902396 -180377158 - MLT1K LTR MaLR -2 586 266 459 0 0 0 chr6 8902405 8902456 -180377098 + (TG)n Simple_repeat Simple_repeat 1 51 0 6725 60 19 2 chr6 8902458 8904164 -180375390 - L1PA7 LINE L1 -3 6151 4423 6899 100 2 5 chr6 8904165 8905201 -180374353 + L1P LINE L1 1490 2522 -3624 1294 268 38 38 chr6 8905326 8905886 -180373668 + MLT2F LTR ERVL 1 560 -103 1467 189 67 28 chr6 8905910 8906270 -180373284 - MLT1A2 LTR MaLR 0 374 1 379 276 110 24 chr6 8906559 8906686 -180372868 + L2 LINE L2 3125 3262 -10 200 328 30 0 chr6 8906987 8907054 -180372500 + L2 LINE L2 3198 3266 -6 2284 96 0 0 chr6 8908265 8908557 -180370997 - AluSg SINE Alu -18 292 1 1838 182 12 45 chr6 8908754 8909155 -180370399 + MLT1B LTR MaLR 3 390 0 1150 225 134 3 chr6 8910230 8910528 -180369026 + MER58B DNA MER1_type 1 337 -4 1505 54 0 0 chr6 8910808 8910993 -180368561 + L1PA4 LINE L1 5963 6147 -8 29 0 0 0 chr6 8910996 8911025 -180368529 + AT_rich Low_complexity Low_complexity 1 29 0 1922 94 128 0 chr6 8911904 8912170 -180367384 + AluSq SINE Alu 1 300 -13 1561 207 46 0 chr6 8912277 8912562 -180366992 + AluJo SINE Alu 1 298 -14 23 0 0 0 chr6 8912676 8912699 -180366855 + AT_rich Low_complexity Low_complexity 1 23 0 265 305 50 14 chr6 8913025 8913166 -180366388 + MLT1K LTR MaLR 335 480 -108 2487 186 215 21 chr6 8913349 8914070 -180365484 - pTR5 LTR ERV1 -226 2212 1352 984 273 79 69 chr6 8914393 8915197 -180364357 - L2 LINE L2 0 3313 2499 240 344 22 0 chr6 8915470 8915560 -180363994 + L2 LINE L2 3222 3313 0 180 219 158 12 chr6 8915588 8915670 -180363884 + MIR SINE MIR 97 190 -72 431 264 47 73 chr6 8916301 8916516 -180363038 - MIR SINE MIR 0 262 56 463 302 130 28 chr6 8917261 8917622 -180361932 - MLT1I LTR MaLR -9 400 3 878 184 32 16 chr6 8919736 8919921 -180359633 + MER3 DNA MER1_type 22 209 0 356 198 25 0 chr6 8921541 8921622 -180357932 + MER69 DNA AcHobo 1 83 -2443 279 275 58 0 chr6 8921744 8921864 -180357690 + MER69 DNA AcHobo 2393 2519 -7 247 258 70 39 chr6 8922058 8922186 -180357368 + MIR SINE MIR 18 149 -59 272 183 176 65 chr6 8922209 8922351 -180357203 + MER5A DNA MER1_type 4 183 -6 2071 140 24 34 chr6 8922630 8923009 -180356545 - THE1C LTR MaLR 0 375 1 1716 181 47 9 chr6 8923030 8923373 -180356181 + MLT1A1 LTR MaLR 10 365 0 1955 154 20 0 chr6 8923593 8923899 -180355655 + AluSx SINE Alu 1 312 0 840 262 173 22 chr6 8925656 8925848 -180353706 - MLT1G LTR MaLR -2 588 426 1917 134 17 76 chr6 8925848 8926205 -180353349 + MER1B DNA MER1_type 2 337 0 840 262 173 22 chr6 8926205 8926504 -180353050 - MLT1G LTR MaLR -164 426 23 2295 107 7 0 chr6 8927654 8927963 -180351591 + AluSq SINE Alu 1 311 -2 507 330 89 0 chr6 8928847 8929083 -180350471 + L2 LINE L2 2100 2356 -958 992 102 28 11 chr6 8929707 8929757 -180349797 + GA-rich Low_complexity Low_complexity 1 230 0 992 102 28 11 chr6 8929757 8929934 -180349620 + GA-rich Low_complexity Low_complexity 1 180 0 564 146 10 0 chr6 8930031 8930127 -180349427 - MLT1A2 LTR MaLR 0 374 278 522 329 61 4 chr6 8931438 8931669 -180347885 + MIR SINE MIR 11 254 -8 363 0 0 0 chr6 8932187 8932233 -180347321 - L1PA4 LINE L1 -175 5980 5935 1420 34 11 6 chr6 8932233 8932409 -180347145 + L1PA4 LINE L1 5975 6153 -2 21 0 0 0 chr6 8934012 8934033 -180345521 + AT_rich Low_complexity Low_complexity 1 21 0 2221 106 0 0 chr6 8934985 8935269 -180344285 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr6 8935269 8935298 -180344256 + (TC)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr6 8936065 8936087 -180343467 + AT_rich Low_complexity Low_complexity 1 22 0 189 218 168 30 chr6 8936160 8936261 -180343293 - MIR SINE MIR -59 203 89 241 200 22 0 chr6 8936612 8936657 -180342897 + L3b LINE CR1 1422 1467 -116 21 0 0 0 chr6 8937097 8937118 -180342436 + AT_rich Low_complexity Low_complexity 1 21 0 395 321 49 5 chr6 8937315 8937539 -180342015 - HsTC2 DNA Tc2 -1026 872 639 446 195 144 8 chr6 8937985 8938103 -180341451 - MLT1D LTR MaLR -1 504 371 8574 104 35 0 chr6 8938106 8939363 -180340191 + L1PA7 LINE L1 1 1301 -5160 20279 90 8 6 chr6 8939371 8943772 -180335782 + L1PA7 LINE L1 2061 6467 -2 625 172 16 23 chr6 8943772 8943900 -180335654 - MLT1D LTR MaLR -119 386 260 3310 148 18 4 chr6 8943900 8944408 -180335146 - MER1A DNA MER1_type 0 529 15 321 250 0 65 chr6 8944550 8944642 -180334912 - MLT1D LTR MaLR -417 88 3 694 310 33 20 chr6 8944767 8944952 -180334602 + MER115 DNA AcHobo 390 582 -111 1850 161 24 18 chr6 8944952 8945293 -180334261 + MER2 DNA MER2_type 2 344 0 694 310 33 20 chr6 8945293 8945407 -180334147 + MER115 DNA AcHobo 582 693 0 193 233 23 0 chr6 8946021 8946064 -180333490 - L3 LINE CR1 -83 1494 1451 28 0 0 0 chr6 8947273 8947301 -180332253 + AT_rich Low_complexity Low_complexity 1 28 0 3878 166 13 11 chr6 8947750 8948462 -180331092 + L1MC1 LINE L1 5616 6328 -5 3668 75 20 2 chr6 8949719 8950222 -180329332 + L1PB1 LINE L1 5639 6150 -1 25 0 0 0 chr6 8950465 8950490 -180329064 + AT_rich Low_complexity Low_complexity 1 25 0 4506 161 19 20 chr6 8950490 8951337 -180328217 - L1MB1 LINE L1 -1 6167 5322 515 210 43 0 chr6 8951335 8951473 -180328081 + L1MB1 LINE L1 5185 5328 -818 * 522 119 40 23 chr6 8952540 8952717 -180326837 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr6 8952735 8952758 -180326796 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 88 0 0 chr6 8952770 8952804 -180326750 + (CA)n Simple_repeat Simple_repeat 2 35 0 357 295 80 20 chr6 8953767 8954101 -180325453 + HAL1b LINE L1 497 641 -776 362 213 0 0 chr6 8954186 8954247 -180325307 + FLAM_A SINE Alu 28 88 -45 263 31 0 0 chr6 8954284 8954316 -180325238 + (GA)n Simple_repeat Simple_repeat 2 33 0 313 115 16 16 chr6 8954317 8954378 -180325176 + (GAAAA)n Simple_repeat Simple_repeat 4 64 0 868 186 16 15 chr6 8954394 8954656 -180324898 + GA-rich Low_complexity Low_complexity 1 261 -326 1430 182 60 33 chr6 8954656 8954958 -180324596 + AluJo SINE Alu 1 310 -2 868 186 16 15 chr6 8954958 8954981 -180324573 + GA-rich Low_complexity Low_complexity 261 587 0 231 114 0 0 chr6 8955017 8955052 -180324502 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3540 227 58 13 chr6 8955134 8956113 -180323441 + L1PB2 LINE L1 6 1028 -5835 729 235 0 29 chr6 8956100 8956304 -180323250 - L1PBa LINE L1 -5258 1605 1408 * 14224 181 15 46 chr6 8956300 8961024 -180318530 + L1PB2 LINE L1 1793 6404 -463 270 56 0 0 chr6 8961024 8961060 -180318494 + (TG)n Simple_repeat Simple_repeat 2 37 0 14224 181 15 46 chr6 8961060 8961511 -180318043 + L1PB2 LINE L1 6404 6867 0 24 0 0 0 chr6 8961545 8961569 -180317985 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 8961717 8961747 -180317807 + AT_rich Low_complexity Low_complexity 1 30 0 619 280 108 91 chr6 8962086 8962926 -180316628 + L1M4 LINE L1 2325 3179 -2967 1552 126 31 126 chr6 8963296 8963621 -180315933 - AluJb SINE Alu -7 295 2 6218 138 15 17 chr6 8963885 8965964 -180313590 - L1MA4 LINE L1 -5 6295 4220 208 128 64 43 chr6 8966213 8966260 -180313294 - MIR3 SINE MIR -17 191 144 220 77 96 0 chr6 8967310 8967362 -180312192 + (TA)n Simple_repeat Simple_repeat 2 58 0 296 130 14 0 chr6 8967425 8967494 -180312060 + (TA)n Simple_repeat Simple_repeat 2 71 0 393 58 0 0 chr6 8967879 8967931 -180311623 + (TG)n Simple_repeat Simple_repeat 2 53 0 501 308 27 7 chr6 8968965 8969111 -180310443 - MIR3 SINE MIR -4 204 56 22 0 0 0 chr6 8969259 8969281 -180310273 + AT_rich Low_complexity Low_complexity 1 22 0 15468 104 8 3 chr6 8970081 8972356 -180307198 - L1P LINE L1 -2371 3775 1490 6696 61 21 5 chr6 8972357 8974063 -180305491 + L1PA7 LINE L1 4423 6151 -3 378 0 0 0 chr6 8974065 8974107 -180305447 + (CA)n Simple_repeat Simple_repeat 1 42 0 493 269 40 120 chr6 8974117 8974466 -180305088 + MLT1K LTR MaLR 266 586 -2 1421 182 54 24 chr6 8975185 8975482 -180304072 + AluJb SINE Alu 1 306 -6 22 70 0 0 chr6 8975771 8975814 -180303740 + AT_rich Low_complexity Low_complexity 1 43 0 1875 144 17 10 chr6 8977001 8977299 -180302255 + AluSx SINE Alu 1 300 -12 604 236 156 31 chr6 8977785 8978010 -180301544 - MER112 DNA MER1_type -7 253 1 420 20 0 0 chr6 8978386 8978435 -180301119 + (CA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr6 8978918 8978939 -180300615 + AT_rich Low_complexity Low_complexity 1 21 0 2312 98 3 0 chr6 8979159 8979455 -180300099 + AluSp SINE Alu 1 297 -16 237 65 0 0 chr6 8980441 8980472 -180299082 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 71 0 0 chr6 8980516 8980544 -180299010 + (TA)n Simple_repeat Simple_repeat 2 29 0 255 281 0 0 chr6 8980786 8980850 -180298704 + (TATG)n Simple_repeat Simple_repeat 4 67 0 233 352 19 19 chr6 8981066 8981171 -180298383 + MIR3 SINE MIR 93 197 -11 231 173 0 0 chr6 8981295 8981347 -180298207 + G-rich Low_complexity Low_complexity 4 55 0 370 159 23 0 chr6 8981874 8981962 -180297592 + GA-rich Low_complexity Low_complexity 3 92 0 1578 209 0 17 chr6 8982255 8982557 -180296997 + AluJo SINE Alu 1 297 -15 1784 141 102 18 chr6 8982575 8982909 -180296645 + MLT1A1 LTR MaLR 4 365 0 666 158 7 20 chr6 8983362 8983514 -180296040 + GA-rich Low_complexity Low_complexity 2 151 0 1733 70 12 19 chr6 8983997 8984253 -180295301 + MER11A LTR ERVK 1013 1266 0 310 204 153 51 chr6 8984772 8984870 -180294684 + MIR3 SINE MIR 83 190 -18 23 0 0 0 chr6 8985854 8985877 -180293677 + AT_rich Low_complexity Low_complexity 1 23 0 374 325 90 5 chr6 8985883 8986071 -180293483 - MIR SINE MIR -38 224 21 199 349 95 35 chr6 8988313 8988628 -180290926 + L2 LINE L2 2529 2862 -452 2203 120 0 0 chr6 8988724 8989025 -180290529 + AluSc SINE Alu 1 301 -8 2901 126 0 0 chr6 8989025 8989454 -180290100 + L1PA15 LINE L1 5727 6155 -10 32 0 0 0 chr6 8989454 8989486 -180290068 + AT_rich Low_complexity Low_complexity 1 32 0 427 276 82 102 chr6 8989505 8989683 -180289871 + L2 LINE L2 2941 3112 -160 2357 97 0 0 chr6 8989683 8989982 -180289572 + AluSx SINE Alu 1 299 -13 427 276 82 102 chr6 8989982 8990107 -180289447 + L2 LINE L2 3112 3238 -34 7922 12 0 0 chr6 8990208 8991818 -180287736 + L1PA2 LINE L1 4546 6155 0 7927 12 0 0 chr6 8990916 8991818 -180287736 + L1PA2 LINE L1 5254 6204 0 207 265 0 0 chr6 8991818 8991867 -180287687 + A-rich Low_complexity Low_complexity 1 180 0 408 238 144 50 chr6 8992825 8992985 -180286569 - MER91B DNA MER1_type -10 180 6 261 0 0 0 chr6 8992988 8993017 -180286537 + (CA)n Simple_repeat Simple_repeat 1 29 0 459 229 65 65 chr6 8993773 8993974 -180285580 - L2 LINE L2 0 3313 3113 * 1078 339 81 33 chr6 8993961 8994569 -180284985 - L2 LINE L2 -543 2771 2135 482 325 128 5 chr6 8994575 8994778 -180284776 + MLT1J1 LTR MaLR 215 442 -4 2025 134 49 37 chr6 8995427 8995837 -180283717 - L1MA4 LINE L1 0 6300 5886 222 233 0 0 chr6 8996373 8996416 -180283138 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 664 310 161 28 chr6 8996751 8997148 -180282406 - LTR16C LTR ERVL 0 491 42 2176 109 30 0 chr6 8997954 8998257 -180281297 + AluSx SINE Alu 1 312 0 616 333 68 30 chr6 8998412 8998778 -180280776 + MLT1I LTR MaLR 2 381 -28 500 305 114 17 chr6 8998763 8999201 -180280353 + LTR33 LTR ERVL 17 520 -1 * 378 257 44 26 chr6 9000304 9000417 -180279137 - MIR SINE MIR -67 195 81 274 268 99 26 chr6 9001063 9001257 -180278297 + MIR SINE MIR 20 221 -41 22 0 0 0 chr6 9001424 9001446 -180278108 + AT_rich Low_complexity Low_complexity 1 22 0 592 285 131 9 chr6 9002837 9003051 -180276503 + MIR SINE MIR 22 261 -1 257 289 67 0 chr6 9004510 9004614 -180274940 + MIR SINE MIR 121 231 -31 210 368 26 40 chr6 9005370 9005522 -180274032 - L2 LINE L2 -557 2757 2608 569 302 52 27 chr6 9007424 9007752 -180271802 + L1ME4a LINE L1 5523 5858 -263 286 381 60 16 chr6 9007948 9008197 -180271357 + L2 LINE L2 2811 3070 -243 201 219 0 0 chr6 9008349 9008390 -180271164 + L2 LINE L2 3272 3312 -1 306 0 0 0 chr6 9008715 9008749 -180270805 + (TG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr6 9009554 9009578 -180269976 + AT_rich Low_complexity Low_complexity 1 24 0 2046 127 0 31 chr6 9011016 9011338 -180268216 + AluJb SINE Alu 1 312 0 36 40 0 0 chr6 9011922 9011972 -180267582 + AT_rich Low_complexity Low_complexity 1 50 0 2097 114 0 0 chr6 9012047 9012336 -180267218 - AluSg SINE Alu -1 309 21 268 298 35 94 chr6 9012382 9012553 -180267001 - L2 LINE L2 -159 3113 2953 4387 184 25 31 chr6 9014870 9015716 -180263838 + MER21B LTR ERV1 1 841 -22 25 0 0 0 chr6 9015850 9015875 -180263679 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr6 9016091 9016134 -180263420 + AT_rich Low_complexity Low_complexity 1 43 0 1600 237 26 40 chr6 9016227 9016338 -180263216 - L1ME LINE L1 -392 6569 6458 207 69 0 0 chr6 9016338 9016367 -180263187 + (TG)n Simple_repeat Simple_repeat 2 30 0 1600 237 26 40 chr6 9016367 9017093 -180262461 - L1ME LINE L1 -503 6458 5750 630 234 100 65 chr6 9017120 9017667 -180261887 - L1MCc LINE L1 -4887 1536 1291 858 301 121 16 chr6 9017692 9018130 -180261424 - L1MCc LINE L1 -5200 1223 740 1015 223 26 108 chr6 9019357 9019566 -180259988 + L1ME2 LINE L1 5773 5933 -231 2627 36 3 0 chr6 9019566 9019867 -180259687 - AluY SINE Alu -9 302 1 1015 223 26 108 chr6 9019867 9020075 -180259479 + L1ME2 LINE L1 5933 6156 -8 467 263 78 43 chr6 9020091 9020203 -180259351 + L1MEd LINE L1 949 1056 -5063 1847 159 0 26 chr6 9020203 9020512 -180259042 + AluJo SINE Alu 1 301 -11 467 263 78 43 chr6 9020512 9020680 -180258874 + L1MEd LINE L1 1056 1239 -4880 1994 142 3 7 chr6 9021100 9021396 -180258158 + AluSx SINE Alu 3 297 -15 546 314 50 0 chr6 9021542 9021701 -180257853 + MIR SINE MIR 23 189 -73 259 325 60 0 chr6 9021854 9021971 -180257583 + MIR SINE MIR 74 197 -65 720 307 141 14 chr6 9021985 9022458 -180257096 + L2 LINE L2 2768 3309 -4 451 317 116 9 chr6 9023210 9023434 -180256120 + MIR SINE MIR 8 255 -7 353 309 142 6 chr6 9023897 9024059 -180255495 - MLT1J2 LTR MaLR -143 307 124 215 286 39 39 chr6 9024203 9024280 -180255274 - MIR SINE MIR -184 78 2 2429 151 47 7 chr6 9024892 9025317 -180254237 - Tigger1 DNA MER2_type 0 2418 1977 * 8787 128 21 9 chr6 9025314 9026685 -180252869 - Tigger1 DNA MER2_type -1001 1417 31 369 131 0 0 chr6 9027131 9027192 -180252362 + (CA)n Simple_repeat Simple_repeat 1 61 0 696 273 98 35 chr6 9030688 9030974 -180248580 + L2 LINE L2 3006 3309 -4 261 317 58 29 chr6 9030981 9031085 -180248469 + MIR3 SINE MIR 66 172 -36 1038 234 140 88 chr6 9031311 9032039 -180247515 + LTR41 LTR ERVL 1 766 -7 22 0 0 0 chr6 9032178 9032200 -180247354 + AT_rich Low_complexity Low_complexity 1 22 0 265 311 78 11 chr6 9033283 9033373 -180246181 - MIR3 SINE MIR -50 158 63 838 271 197 14 chr6 9033426 9033858 -180245696 + MLT1J LTR MaLR 1 511 0 247 268 24 24 chr6 9033952 9034051 -180245503 + MER5A DNA MER1_type 4 102 -87 22 0 0 0 chr6 9034808 9034830 -180244724 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr6 9034985 9035019 -180244535 + AT_rich Low_complexity Low_complexity 1 34 0 5879 91 11 0 chr6 9035019 9036454 -180243100 - L1PA8A LINE L1 -3 6128 4690 3563 116 227 0 chr6 9036455 9037156 -180242398 - L1PA8A LINE L1 -1545 4601 3742 2320 225 105 43 chr6 9037289 9037430 -180242124 - L1ME1 LINE L1 -5 6144 6013 2203 86 0 7 chr6 9037430 9037738 -180241816 - AluSc SINE Alu 0 306 1 2320 225 105 43 chr6 9037738 9038961 -180240593 - L1ME1 LINE L1 -136 6013 4686 1251 257 60 12 chr6 9038966 9039382 -180240172 - L1ME1 LINE L1 -1938 4191 3756 464 272 71 42 chr6 9039959 9040129 -180239425 - L1ME1 LINE L1 -4880 1239 1056 1796 163 0 26 chr6 9040129 9040435 -180239119 - AluJo SINE Alu -14 298 1 464 272 71 42 chr6 9040435 9040547 -180239007 - L1ME1 LINE L1 -5063 1056 949 1022 223 26 108 chr6 9040563 9040771 -180238783 - L1ME2 LINE L1 -8 6156 5997 2448 38 34 0 chr6 9040771 9041062 -180238492 + AluY SINE Alu 1 301 -10 1022 223 26 108 chr6 9041062 9041271 -180238283 - L1ME2 LINE L1 -167 5997 5773 901 301 121 16 chr6 9042498 9042936 -180236618 + L1ME LINE L1 740 1223 -5200 616 231 102 68 chr6 9042961 9043508 -180236046 + L1ME LINE L1 1291 1833 -4887 1566 238 27 40 chr6 9043535 9044260 -180235294 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 9044260 9044289 -180235265 + (CA)n Simple_repeat Simple_repeat 2 30 0 1566 238 27 40 chr6 9044289 9044400 -180235154 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 9044493 9044536 -180235018 + AT_rich Low_complexity Low_complexity 1 43 0 576 200 90 0 chr6 9044639 9044784 -180234770 + L1MB1 LINE L1 4775 4932 -1214 2606 45 0 3 chr6 9044824 9045132 -180234422 - AluY SINE Alu -4 307 1 2368 225 34 17 chr6 9045162 9045806 -180233748 - L1MB1 LINE L1 -783 5363 4709 * 4121 150 53 8 chr6 9045804 9046570 -180232984 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9046573 9046599 -180232955 + (TAA)n Simple_repeat Simple_repeat 2 27 0 706 263 202 20 chr6 9046601 9046898 -180232656 - L2 LINE L2 -1625 1689 1339 433 285 73 0 chr6 9046956 9047079 -180232475 - MER58B DNA MER1_type 0 341 210 283 314 0 0 chr6 9047266 9047336 -180232218 - MER63 DNA MER1_type -7 1053 984 278 229 43 0 chr6 9047358 9047428 -180232126 - MER63 DNA MER1_type -123 713 15 480 250 86 0 chr6 9047905 9048033 -180231521 + MIR SINE MIR 86 224 -38 915 328 65 21 chr6 9048061 9048723 -180230831 + L2 LINE L2 2629 3313 0 2289 109 0 3 chr6 9048997 9049310 -180230244 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9049833 9049893 -180229661 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9050278 9050304 -180229250 + AT_rich Low_complexity Low_complexity 1 26 0 630 222 0 0 chr6 9051250 9051358 -180228196 + Tigger3(Golem) DNA MER2_type 1 108 -2921 432 0 0 0 chr6 9051358 9051406 -180228148 + (T)n Simple_repeat Simple_repeat 1 48 0 1951 83 8 0 chr6 9051460 9051726 -180227828 - L1PA8 LINE L1 0 6172 5905 4158 140 28 29 chr6 9051731 9052481 -180227073 + Tigger3(Golem) DNA MER2_type 2281 3029 0 375 266 0 62 chr6 9052483 9052611 -180226943 + L2 LINE L2 3180 3299 -14 295 287 59 30 chr6 9052715 9052816 -180226738 - L2 LINE L2 0 3313 3210 401 222 127 16 chr6 9052862 9052988 -180226566 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9053578 9053608 -180225946 + (CA)n Simple_repeat Simple_repeat 2 31 0 566 157 62 105 chr6 9054258 9054468 -180225086 - L1MA9 LINE L1 -1 6311 6111 344 237 49 105 chr6 9054480 9054653 -180224901 - MIR SINE MIR -62 146 32 317 273 20 40 chr6 9056368 9056467 -180223087 + MIR SINE MIR 82 178 -84 2134 90 0 0 chr6 9057009 9057276 -180222278 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9057461 9057499 -180222055 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 422 267 136 11 chr6 9057522 9057698 -180221856 + MIR SINE MIR 46 243 -19 285 245 59 29 chr6 9057741 9057843 -180221711 - MIR3 SINE MIR -3 205 101 1467 189 172 56 chr6 9057860 9057899 -180221655 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9057899 9057943 -180221611 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1467 189 172 56 chr6 9057943 9058369 -180221185 - MLT2B1 LTR ERVL -33 487 1 1839 156 3 0 chr6 9058554 9058871 -180220683 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9060142 9060203 -180219351 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9060953 9061079 -180218475 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9061124 9061514 -180218040 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9063121 9063293 -180216261 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9064539 9064734 -180214820 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9065328 9065362 -180214192 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9065362 9065671 -180213883 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9065702 9065779 -180213775 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9066475 9066496 -180213058 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9066527 9066592 -180212962 - L1PB1 LINE L1 0 6151 6088 285 197 0 0 chr6 9067052 9067128 -180212426 + C-rich Low_complexity Low_complexity 1 76 0 522 119 40 23 chr6 9067268 9067445 -180212109 + (TA)n Simple_repeat Simple_repeat 1 180 0 515 210 43 0 chr6 9068512 9068650 -180210904 - L1MB1 LINE L1 -818 5328 5185 * 4506 161 19 20 chr6 9068648 9069495 -180210059 + L1MB1 LINE L1 5322 6167 -1 25 0 0 0 chr6 9069495 9069520 -180210034 + AT_rich Low_complexity Low_complexity 1 25 0 3683 74 20 2 chr6 9069763 9070266 -180209288 - L1PB1 LINE L1 -1 6150 5639 3878 166 13 11 chr6 9071523 9072235 -180207319 - L1MC1 LINE L1 -5 6328 5616 28 0 0 0 chr6 9072684 9072712 -180206842 + AT_rich Low_complexity Low_complexity 1 28 0 193 233 23 0 chr6 9073921 9073964 -180205590 + L3 LINE CR1 1451 1494 -83 694 310 33 20 chr6 9074578 9074692 -180204862 - MER115 DNA AcHobo 0 693 582 1850 161 24 18 chr6 9074692 9075033 -180204521 - MER2 DNA MER2_type 0 344 2 694 310 33 20 chr6 9075033 9075218 -180204336 - MER115 DNA AcHobo -111 582 390 321 250 0 65 chr6 9075343 9075435 -180204119 + MLT1D LTR MaLR 3 88 -417 3310 148 18 4 chr6 9075577 9076085 -180203469 + MER1A DNA MER1_type 15 529 0 625 172 16 23 chr6 9076085 9076213 -180203341 + MLT1D LTR MaLR 260 386 -119 25080 90 8 6 chr6 9076213 9080614 -180198940 - L1PA7 LINE L1 -2 6467 2061 9058 104 35 0 chr6 9080622 9081879 -180197675 - L1PA7 LINE L1 -5160 1301 1 484 195 144 8 chr6 9081882 9082000 -180197554 + MLT1D LTR MaLR 371 504 -1 225 158 0 0 chr6 9082264 9082302 -180197252 + HsTC2 DNA Tc2 231 268 -1630 457 321 49 5 chr6 9082446 9082670 -180196884 + HsTC2 DNA Tc2 639 872 -1026 21 0 0 0 chr6 9082867 9082888 -180196666 + AT_rich Low_complexity Low_complexity 1 21 0 241 200 22 0 chr6 9083328 9083373 -180196181 - L3b LINE CR1 -116 1467 1422 189 218 168 30 chr6 9083724 9083825 -180195729 + MIR SINE MIR 89 203 -59 22 0 0 0 chr6 9083898 9083920 -180195634 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr6 9084685 9084714 -180194840 + (GA)n Simple_repeat Simple_repeat 2 30 0 2212 106 0 0 chr6 9084714 9084998 -180194556 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 9085950 9085971 -180193583 + AT_rich Low_complexity Low_complexity 1 21 0 1414 34 11 6 chr6 9087574 9087752 -180191802 - L1PA4 LINE L1 -2 6153 5975 351 0 0 0 chr6 9087752 9087796 -180191758 + L1PA4 LINE L1 5937 5980 -175 519 329 61 4 chr6 9088314 9088545 -180191009 - MIR SINE MIR -8 254 11 596 146 10 0 chr6 9089856 9089952 -180189602 + MLT1A2 LTR MaLR 278 374 0 965 103 29 11 chr6 9090002 9090049 -180189505 + CT-rich Low_complexity Low_complexity 1 224 0 965 103 29 11 chr6 9090049 9090223 -180189331 + CT-rich Low_complexity Low_complexity 4 180 0 513 330 89 0 chr6 9090896 9091132 -180188422 - L2 LINE L2 -958 2356 2100 2275 107 7 0 chr6 9092016 9092325 -180187229 - AluSq SINE Alu -2 311 1 840 262 173 22 chr6 9093475 9093774 -180185780 + MLT1G LTR MaLR 23 276 -314 1917 134 17 76 chr6 9093774 9094131 -180185423 - MER1B DNA MER1_type 0 337 2 840 262 173 22 chr6 9094131 9094323 -180185231 + MLT1G LTR MaLR 276 588 -2 1955 154 20 0 chr6 9096080 9096386 -180183168 - AluSx SINE Alu 0 312 1 1716 181 47 9 chr6 9096606 9096949 -180182605 - MLT1A1 LTR MaLR 0 365 10 2071 140 24 34 chr6 9096970 9097349 -180182205 + THE1C LTR MaLR 1 375 0 272 183 176 65 chr6 9097628 9097770 -180181784 - MER5A DNA MER1_type -6 183 4 247 258 70 39 chr6 9097793 9097921 -180181633 - MIR SINE MIR -59 149 18 279 275 58 0 chr6 9098115 9098235 -180181319 - MER69 DNA AcHobo -7 2519 2393 356 198 25 0 chr6 9098357 9098438 -180181116 - MER69 DNA AcHobo -2443 83 1 878 184 32 16 chr6 9100058 9100243 -180179311 - MER3 DNA MER1_type 0 209 22 463 302 130 28 chr6 9102357 9102718 -180176836 + MLT1I LTR MaLR 3 400 -9 431 264 47 73 chr6 9103463 9103678 -180175876 + MIR SINE MIR 56 262 0 180 219 158 12 chr6 9104309 9104391 -180175163 - MIR SINE MIR -72 190 97 240 344 22 0 chr6 9104419 9104509 -180175045 - L2 LINE L2 0 3313 3222 984 273 79 69 chr6 9104782 9105586 -180173968 + L2 LINE L2 2499 3313 0 2487 186 215 21 chr6 9105909 9106630 -180172924 + pTR5 LTR ERV1 1352 2212 -226 265 305 50 14 chr6 9106813 9106954 -180172600 - MLT1K LTR MaLR -108 480 335 23 0 0 0 chr6 9107280 9107303 -180172251 + AT_rich Low_complexity Low_complexity 1 23 0 1561 207 46 0 chr6 9107417 9107702 -180171852 - AluJo SINE Alu -14 298 1 1887 94 127 4 chr6 9107809 9108076 -180171478 - AluSq SINE Alu -13 300 1 29 0 0 0 chr6 9108955 9108984 -180170570 + AT_rich Low_complexity Low_complexity 1 29 0 1505 54 0 0 chr6 9108987 9109172 -180170382 - L1PA4 LINE L1 -8 6147 5963 1169 221 134 3 chr6 9109452 9109750 -180169804 - MER58B DNA MER1_type -4 337 1 1838 182 12 45 chr6 9110825 9111226 -180168328 - MLT1B LTR MaLR 0 390 3 2284 96 0 0 chr6 9111423 9111715 -180167839 + AluSg SINE Alu 1 292 -18 200 328 30 0 chr6 9112926 9112993 -180166561 - L2 LINE L2 -6 3266 3198 379 276 110 24 chr6 9113294 9113421 -180166133 - L2 LINE L2 -10 3262 3125 1467 189 67 28 chr6 9113710 9114070 -180165484 + MLT1A2 LTR MaLR 1 374 0 1294 268 38 38 chr6 9114094 9114654 -180164900 - MLT2F LTR ERVL -103 560 1 204 163 0 23 chr6 9115406 9115449 -180164105 + A-rich Low_complexity Low_complexity 2 43 0 276 30 0 0 chr6 9115826 9115859 -180163695 + (A)n Simple_repeat Simple_repeat 1 33 0 377 361 95 23 chr6 9116764 9117110 -180162444 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9117636 9118183 -180161371 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9120894 9121248 -180158306 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9121739 9121890 -180157664 - MIR SINE MIR -74 188 46 189 0 0 0 chr6 9124876 9124897 -180154657 + (T)n Simple_repeat Simple_repeat 1 21 0 247 362 0 0 chr6 9125414 9125483 -180154071 - L2 LINE L2 -4 3268 3200 826 213 4 43 chr6 9127144 9127374 -180152180 + pTR5 LTR ERV1 743 963 -1475 * 1252 139 30 11 chr6 9127347 9127614 -180151940 - pTR5 LTR ERV1 -1093 1345 1074 3781 115 132 127 chr6 9127796 9129261 -180150293 + pTR5 LTR ERV1 1088 2438 0 180 292 21 0 chr6 9130483 9130531 -180149023 - MIR SINE MIR -10 252 204 2283 225 105 8 chr6 9130844 9131659 -180147895 + L1ME2 LINE L1 5236 6148 -18 252 293 24 42 chr6 9131681 9131893 -180147661 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 9132660 9132735 -180146819 - MIR3 SINE MIR -17 191 116 519 154 49 0 chr6 9133421 9133544 -180146010 - L1MA10 LINE L1 -2 6332 6204 387 41 0 0 chr6 9134497 9134546 -180145008 + (TG)n Simple_repeat Simple_repeat 1 49 0 361 321 67 12 chr6 9135142 9135307 -180144247 + MIR SINE MIR 70 243 -19 231 244 105 118 chr6 9135408 9135646 -180143908 + L2 LINE L2 3015 3249 -64 198 118 0 0 chr6 9137747 9137781 -180141773 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9139561 9139639 -180139915 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9139750 9140127 -180139427 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9140499 9140807 -180138747 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9140935 9141016 -180138538 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9141494 9141689 -180137865 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9141718 9141741 -180137813 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9141783 9141923 -180137631 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9142359 9142790 -180136764 + MER115 DNA AcHobo 2 434 -259 2626 51 0 0 chr6 9142797 9143108 -180136446 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9143208 9143296 -180136258 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9144194 9144218 -180135336 + AT_rich Low_complexity Low_complexity 1 24 0 1305 200 3 7 chr6 9144498 9144718 -180134836 - L1MB3 LINE L1 -2 6181 5961 1973 117 27 20 chr6 9144718 9144889 -180134665 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9144889 9144927 -180134627 + (TG)n Simple_repeat Simple_repeat 2 40 0 1973 117 27 20 chr6 9144927 9145054 -180134500 - AluSx SINE Alu -186 126 1 1305 200 3 7 chr6 9145054 9145123 -180134431 - L1MB3 LINE L1 -222 5961 5893 720 180 0 7 chr6 9145127 9145266 -180134288 - L1MB3 LINE L1 -719 5461 5324 912 250 94 3 chr6 9145266 9145650 -180133904 + MER114 LTR ERV 178 596 -52 1861 90 105 18 chr6 9146171 9146448 -180133106 + AluSq SINE Alu 1 301 -12 2028 121 0 0 chr6 9146812 9147094 -180132460 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9147606 9147630 -180131924 + (CA)n Simple_repeat Simple_repeat 2 25 0 629 368 68 29 chr6 9148126 9148507 -180131047 - L2 LINE L2 -5 3267 2872 957 365 37 23 chr6 9148574 9149351 -180130203 - L2 LINE L2 -514 2800 2013 187 411 18 0 chr6 9149627 9149683 -180129871 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9150013 9150053 -180129501 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 411 286 97 35 chr6 9150053 9150280 -180129274 - L2 LINE L2 -20 3293 3053 539 250 170 9 chr6 9150350 9150574 -180128980 + LTR16C LTR ERVL 232 491 0 1443 257 31 53 chr6 9150932 9151418 -180128136 - LTR53 LTR ERVL -9 510 36 2220 127 0 0 chr6 9153466 9153774 -180125780 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9154468 9154499 -180125055 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9154521 9154551 -180125003 + AT_rich Low_complexity Low_complexity 1 30 0 4984 220 58 41 chr6 9156471 9159211 -180120343 - L1MD1 LINE L1 0 6242 3451 1508 142 4 37 chr6 9159272 9159518 -180120036 - MER1B DNA MER1_type -1 338 101 1875 138 95 14 chr6 9159518 9159865 -180119689 + THE1C LTR MaLR 1 375 0 9642 117 53 11 chr6 9159865 9161381 -180118173 + THE1C-int LTR MaLR 1 1580 0 475 111 12 49 chr6 9161381 9161462 -180118092 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9163756 9163785 -180115769 + AT_rich Low_complexity Low_complexity 1 29 0 558 264 171 39 chr6 9164233 9164315 -180115239 - L2 LINE L2 -1267 2047 1977 1790 208 8 24 chr6 9164315 9164686 -180114868 - MLT1A1 LTR MaLR 0 365 1 558 264 171 39 chr6 9164686 9164861 -180114693 - L2 LINE L2 -1337 1977 1756 2430 93 0 0 chr6 9164864 9165165 -180114389 + AluSg SINE Alu 1 301 -9 732 198 76 0 chr6 9165172 9165344 -180114210 + L1 LINE L1 4748 4932 -1214 1095 64 7 0 chr6 9165384 9165525 -180114029 - AluY SINE Alu -4 307 166 377 361 95 23 chr6 9216311 9216657 -180062897 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9217183 9217730 -180061824 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9220441 9220795 -180058759 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9221286 9221437 -180058117 - MIR SINE MIR -74 188 46 207 0 0 0 chr6 9224423 9224446 -180055108 + (T)n Simple_repeat Simple_repeat 1 23 0 247 362 0 0 chr6 9224963 9225032 -180054522 - L2 LINE L2 -4 3268 3200 830 209 4 43 chr6 9226693 9226923 -180052631 + pTR5 LTR ERV1 743 963 -1475 * 1255 135 30 11 chr6 9226896 9227163 -180052391 - pTR5 LTR ERV1 -1093 1345 1074 * 4474 119 122 120 chr6 9227148 9228772 -180050782 + pTR5 LTR ERV1 936 2438 0 180 292 21 0 chr6 9229994 9230042 -180049512 - MIR SINE MIR -10 252 204 198 118 0 0 chr6 9231036 9231070 -180048484 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9232850 9232928 -180046626 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9233039 9233416 -180046138 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9233788 9234096 -180045458 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9234224 9234305 -180045249 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9234783 9234978 -180044576 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9235007 9235030 -180044524 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9235072 9235212 -180044342 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9235648 9236079 -180043475 + MER115 DNA AcHobo 2 434 -259 2621 51 0 0 chr6 9236086 9236397 -180043157 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9236497 9236585 -180042969 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9237483 9237507 -180042047 + AT_rich Low_complexity Low_complexity 1 24 0 1290 200 3 7 chr6 9237787 9238007 -180041547 - L1MB3 LINE L1 -2 6181 5961 1990 117 27 20 chr6 9238007 9238178 -180041376 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9238178 9238216 -180041338 + (TG)n Simple_repeat Simple_repeat 2 40 0 1990 117 27 20 chr6 9238216 9238343 -180041211 - AluSx SINE Alu -186 126 1 1290 200 3 7 chr6 9238343 9238412 -180041142 - L1MB3 LINE L1 -222 5961 5893 677 180 0 7 chr6 9238416 9238555 -180040999 - L1MB3 LINE L1 -719 5461 5324 826 250 94 3 chr6 9238555 9238939 -180040615 + MER114 LTR ERV 178 596 -52 1870 90 105 18 chr6 9239460 9239737 -180039817 + AluSq SINE Alu 1 301 -12 2019 124 0 0 chr6 9240101 9240383 -180039171 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9240895 9240919 -180038635 + (CA)n Simple_repeat Simple_repeat 2 25 0 622 368 68 29 chr6 9241415 9241796 -180037758 - L2 LINE L2 -5 3267 2872 995 364 37 23 chr6 9241863 9242640 -180036914 - L2 LINE L2 -514 2800 2013 186 411 18 0 chr6 9242916 9242972 -180036582 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9243302 9243342 -180036212 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 415 286 97 35 chr6 9243342 9243569 -180035985 - L2 LINE L2 -20 3293 3053 461 250 170 9 chr6 9243639 9243863 -180035691 + LTR16C LTR ERVL 232 491 0 1299 257 31 53 chr6 9244221 9244707 -180034847 - LTR53 LTR ERVL -9 510 36 2220 127 0 0 chr6 9246755 9247063 -180032491 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9247757 9247788 -180031766 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9247810 9247840 -180031714 + AT_rich Low_complexity Low_complexity 1 30 0 4984 220 58 41 chr6 9249760 9252500 -180027054 - L1MD1 LINE L1 0 6242 3451 1508 142 4 37 chr6 9252559 9252805 -180026749 - MER1B DNA MER1_type -1 338 101 1875 138 95 14 chr6 9252805 9253152 -180026402 + THE1C LTR MaLR 1 375 0 9642 117 53 11 chr6 9253152 9254668 -180024886 + THE1C-int LTR MaLR 1 1580 0 475 111 12 49 chr6 9254668 9254749 -180024805 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9257043 9257072 -180022482 + AT_rich Low_complexity Low_complexity 1 29 0 558 264 171 39 chr6 9257520 9257602 -180021952 - L2 LINE L2 -1267 2047 1977 1790 208 8 24 chr6 9257602 9257973 -180021581 - MLT1A1 LTR MaLR 0 365 1 558 264 171 39 chr6 9257973 9258148 -180021406 - L2 LINE L2 -1337 1977 1756 2430 93 0 0 chr6 9258151 9258452 -180021102 + AluSg SINE Alu 1 301 -9 776 196 69 0 chr6 9258459 9258632 -180020922 + L1MB1 LINE L1 4748 4932 -1214 2622 45 0 3 chr6 9258672 9258982 -180020572 - AluY SINE Alu -2 309 1 2368 225 34 17 chr6 9259012 9259656 -180019898 - L1MB1 LINE L1 -783 5363 4709 * 4121 150 53 8 chr6 9259654 9260420 -180019134 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9260423 9260449 -180019105 + (TAA)n Simple_repeat Simple_repeat 2 27 0 706 263 202 20 chr6 9260451 9260748 -180018806 - L2 LINE L2 -1625 1689 1339 433 285 73 0 chr6 9260806 9260929 -180018625 - MER58B DNA MER1_type 0 341 210 283 314 0 0 chr6 9261116 9261186 -180018368 - MER63 DNA MER1_type -7 1054 985 278 229 43 0 chr6 9261208 9261278 -180018276 - MER63 DNA MER1_type -349 713 15 480 250 86 0 chr6 9261755 9261883 -180017671 + MIR SINE MIR 86 224 -38 915 328 65 21 chr6 9261911 9262573 -180016981 + L2 LINE L2 2629 3313 0 2289 109 0 3 chr6 9262846 9263159 -180016395 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9263682 9263742 -180015812 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9264127 9264153 -180015401 + AT_rich Low_complexity Low_complexity 1 26 0 630 222 0 0 chr6 9265099 9265207 -180014347 + Tigger3(Golem) DNA MER2_type 1 108 -2921 198 0 0 0 chr6 9265207 9265229 -180014325 + (T)n Simple_repeat Simple_repeat 1 22 0 1951 83 8 0 chr6 9265283 9265549 -180014005 - L1PA8 LINE L1 0 6172 5905 4158 140 28 29 chr6 9265554 9266304 -180013250 + Tigger3(Golem) DNA MER2_type 2281 3029 0 375 266 0 62 chr6 9266306 9266434 -180013120 + L2 LINE L2 3180 3299 -14 295 287 59 30 chr6 9266538 9266639 -180012915 - L2 LINE L2 0 3313 3210 401 222 127 16 chr6 9266685 9266811 -180012743 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9267401 9267431 -180012123 + (CA)n Simple_repeat Simple_repeat 2 31 0 566 157 62 105 chr6 9268081 9268291 -180011263 - L1MA9 LINE L1 -1 6311 6111 344 237 49 105 chr6 9268303 9268476 -180011078 - MIR SINE MIR -62 146 32 317 273 20 40 chr6 9270191 9270290 -180009264 + MIR SINE MIR 82 178 -84 2134 90 0 0 chr6 9270832 9271099 -180008455 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9271284 9271322 -180008232 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 422 267 136 11 chr6 9271345 9271521 -180008033 + MIR SINE MIR 46 243 -19 285 245 59 29 chr6 9271564 9271666 -180007888 - MIR3 SINE MIR -3 205 101 1467 189 172 56 chr6 9271683 9271722 -180007832 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9271722 9271766 -180007788 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1467 189 172 56 chr6 9271766 9272192 -180007362 - MLT2B1 LTR ERVL -33 487 1 1879 155 0 0 chr6 9272377 9272695 -180006859 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9273966 9274027 -180005527 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9274777 9274903 -180004651 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9274948 9275338 -180004216 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9276945 9277117 -180002437 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9278363 9278558 -180000996 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9279152 9279186 -180000368 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9279186 9279495 -180000059 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9279526 9279603 -179999951 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9280299 9280320 -179999234 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9280351 9280416 -179999138 - L1PB1 LINE L1 0 6151 6088 290 331 147 22 chr6 9281481 9281665 -179997889 + MIR SINE MIR 26 232 -30 880 210 23 0 chr6 9281684 9281860 -179997694 + MER5A DNA MER1_type 10 189 0 236 391 0 13 chr6 9282021 9282172 -179997382 - MIR SINE MIR -3 259 111 297 308 8 34 chr6 9282500 9282617 -179996937 + L2 LINE L2 3200 3313 0 442 294 75 37 chr6 9282821 9283008 -179996546 - MIR3 SINE MIR -1 207 14 727 266 29 14 chr6 9283140 9283347 -179996207 + MIR SINE MIR 53 262 0 713 206 0 0 chr6 9284014 9284140 -179995414 + FLAM_C SINE Alu 5 130 -3 223 234 16 23 chr6 9284148 9284276 -179995278 + (TA)n Simple_repeat Simple_repeat 1 127 0 240 35 0 0 chr6 9285498 9285527 -179994027 + (CA)n Simple_repeat Simple_repeat 2 30 0 1585 106 4 0 chr6 9286852 9287078 -179992476 - AluSg/x SINE Alu -3 309 83 206 321 0 0 chr6 9288549 9288605 -179990949 - L2 LINE L2 -12 3301 3246 714 264 26 45 chr6 9289083 9289462 -179990092 - L1M4 LINE L1 -2523 3623 3252 195 167 0 0 chr6 9289645 9289687 -179989867 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 272 223 60 18 chr6 9289703 9289869 -179989685 + (TA)n Simple_repeat Simple_repeat 1 173 0 1465 238 108 20 chr6 9292258 9292758 -179986796 + L1M4 LINE L1 3791 4334 -1812 300 200 12 50 chr6 9292824 9292889 -179986665 - MLT1F1 LTR MaLR -452 115 52 710 62 0 71 chr6 9292889 9293001 -179986553 - L1PA7 LINE L1 0 6154 6051 300 200 12 50 chr6 9293001 9293015 -179986539 - MLT1F1 LTR MaLR -515 52 39 1742 167 31 28 chr6 9293740 9294099 -179985455 + MLT1A1 LTR MaLR 6 365 0 550 195 18 44 chr6 9294105 9294218 -179985336 - FLAM_A SINE Alu -20 122 13 500 299 79 25 chr6 9294258 9294499 -179985055 - MIR SINE MIR -5 257 4 1454 169 71 42 chr6 9295176 9295513 -179984041 - MER7A DNA MER2_type -1 345 1 396 315 136 6 chr6 9295710 9295872 -179983682 - MIR SINE MIR -75 187 5 191 290 54 21 chr6 9295931 9296024 -179983530 + MIR SINE MIR 78 173 -89 192 267 67 44 chr6 9298172 9298262 -179981292 - L2 LINE L2 -14 3258 3167 1335 236 49 3 chr6 9298293 9298658 -179980896 + L1M4 LINE L1 3537 3918 -2228 * 6168 213 48 7 chr6 9298637 9300989 -179978565 + L1MB5 LINE L1 3715 6166 -8 473 260 78 0 chr6 9301071 9301225 -179978329 - Tigger6a DNA MER2_type -1 1082 917 9461 176 26 12 chr6 9301225 9304045 -179975509 + L1PA16 LINE L1 3305 6165 -1 3607 219 54 6 chr6 9304045 9304933 -179974621 - Tigger6a DNA MER2_type -138 945 15 903 186 194 75 chr6 9305304 9305630 -179973924 + MSTD LTR MaLR 10 396 0 192 266 147 28 chr6 9305638 9305747 -179973807 + MIR SINE MIR 64 185 -77 244 300 0 0 chr6 9305785 9305855 -179973699 - L2 LINE L2 -9 3263 3194 390 217 86 9 chr6 9406132 9406261 -179873293 - MSTC LTR MaLR -258 138 1 204 111 0 0 chr6 9406270 9406306 -179873248 + (A)n Simple_repeat Simple_repeat 1 36 0 2106 130 0 10 chr6 9407166 9407467 -179872087 + AluSx SINE Alu 1 298 -14 2292 95 0 0 chr6 9408879 9409173 -179870381 - AluSg SINE Alu -16 294 1 197 389 29 29 chr6 9409252 9409391 -179870163 - MIR3 SINE MIR -66 142 4 2373 58 3 26 chr6 9410510 9410820 -179868734 + AluY SINE Alu 1 303 -8 1415 278 56 7 chr6 9410920 9411511 -179868043 + L1MCc LINE L1 875 1494 -4929 267 31 0 0 chr6 9411538 9411570 -179867984 + (TG)n Simple_repeat Simple_repeat 1 32 0 1331 169 16 4 chr6 9411586 9411828 -179867726 - MLT2D LTR ERVL -169 245 1 650 301 47 50 chr6 9411850 9412172 -179867382 + L1MCb LINE L1 245 565 -5480 622 136 41 41 chr6 9412346 9412493 -179867061 - L1MA9 LINE L1 -87 6225 6079 400 160 90 0 chr6 9412495 9412595 -179866959 + L1MA9 LINE L1 6202 6310 -2 231 325 52 45 chr6 9412918 9412999 -179866555 + MIR SINE MIR 17 101 -161 2342 108 51 14 chr6 9412999 9413350 -179866204 - THE1B LTR MaLR 0 364 1 231 325 52 45 chr6 9413350 9413422 -179866132 + MIR SINE MIR 101 171 -91 2228 247 124 20 chr6 9413542 9414946 -179864608 + L1MCb LINE L1 765 2467 -4278 1291 284 39 11 chr6 9414928 9415562 -179863992 + L1MCc LINE L1 1897 2699 -4423 * 596 222 205 10 chr6 9415683 9415971 -179863583 - L1MCa LINE L1 -4830 1596 1253 241 353 150 38 chr6 9416573 9416972 -179862582 + L2 LINE L2 2315 2758 -556 324 0 0 0 chr6 9417101 9417137 -179862417 + (CA)n Simple_repeat Simple_repeat 2 37 0 193 373 111 30 chr6 9417165 9417436 -179862118 + L2 LINE L2 2972 3264 -8 800 279 21 18 chr6 9417514 9417797 -179861757 + MLT1G LTR MaLR 10 293 -297 271 280 96 16 chr6 9417906 9418031 -179861523 + MLT1G LTR MaLR 402 536 -6 4477 116 91 127 chr6 9418102 9419682 -179859872 - pTR5 LTR ERV1 0 2438 741 2202 113 0 0 chr6 9419687 9419979 -179859575 + AluSx SINE Alu 1 292 -20 45 19 0 0 chr6 9419980 9420032 -179859522 + AT_rich Low_complexity Low_complexity 1 52 0 2480 58 0 0 chr6 9422261 9422552 -179857002 - AluY SINE Alu -20 291 1 24 32 0 0 chr6 9423169 9423200 -179856354 + AT_rich Low_complexity Low_complexity 1 31 0 983 219 159 4 chr6 9423236 9423469 -179856085 + AluSx SINE Alu 26 294 -18 22 0 0 0 chr6 9423469 9423491 -179856063 + AT_rich Low_complexity Low_complexity 1 22 0 194 347 61 38 chr6 9425250 9425593 -179853961 + L2 LINE L2 2332 2682 -632 210 71 0 0 chr6 9425781 9425809 -179853745 + (T)n Simple_repeat Simple_repeat 1 28 0 231 405 68 35 chr6 9425821 9426132 -179853422 + L2 LINE L2 2943 3263 -9 2115 125 3 0 chr6 9426148 9426445 -179853109 - AluSx SINE Alu -14 298 1 186 43 0 0 chr6 9426779 9426802 -179852752 + (TG)n Simple_repeat Simple_repeat 2 24 0 275 221 15 0 chr6 9426815 9426883 -179852671 + GA-rich Low_complexity Low_complexity 2 70 0 26 0 0 0 chr6 9427799 9427825 -179851729 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr6 9428319 9428353 -179851201 + AT_rich Low_complexity Low_complexity 1 34 0 940 227 112 51 chr6 9428757 9429070 -179850484 - MLT1D LTR MaLR -151 354 23 853 0 0 0 chr6 9429081 9429177 -179850377 - AluYa5/8 SINE Alu 0 311 216 1135 168 17 0 chr6 9429851 9430083 -179849471 - L1MC3 LINE L1 -11 7774 7539 1522 185 176 45 chr6 9430092 9430585 -179848969 - L1MC3 LINE L1 -540 7245 6688 855 78 0 0 chr6 9430593 9430709 -179848845 + (TA)n Simple_repeat Simple_repeat 2 117 0 2382 76 6 19 chr6 9430709 9431024 -179848530 - AluY SINE Alu 0 311 1 24 0 0 0 chr6 9431033 9431057 -179848497 + AT_rich Low_complexity Low_complexity 1 24 0 304 100 80 0 chr6 9431347 9431397 -179848157 + U2 snRNA snRNA 1 54 -134 21 0 0 0 chr6 9431399 9431420 -179848134 + AT_rich Low_complexity Low_complexity 1 21 0 246 349 63 37 chr6 9431672 9431861 -179847693 - L2 LINE L2 -191 3081 2888 573 40 0 0 chr6 9431892 9431967 -179847587 + MER41A LTR ERV1 395 469 -85 5000 117 1 6 chr6 9432046 9432405 -179847149 - L1PB1 LINE L1 -1 6150 5791 351 0 0 0 chr6 9432405 9432444 -179847110 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5000 117 1 6 chr6 9432444 9432877 -179846677 - L1PB1 LINE L1 -360 5791 5362 583 79 0 0 chr6 9432877 9432966 -179846588 + L1P LINE L1 5267 5355 -796 199 241 29 176 chr6 9433036 9433206 -179846348 - MIR SINE MIR -29 233 89 22 0 0 0 chr6 9433311 9433333 -179846221 + AT_rich Low_complexity Low_complexity 1 22 0 1864 103 4 27 chr6 9433342 9433604 -179845950 + AluSx SINE Alu 44 299 -13 2005 168 5 35 chr6 9433858 9434262 -179845292 + MER57A LTR ERV1 12 403 0 2239 104 0 0 chr6 9434318 9434615 -179844939 + AluSq SINE Alu 1 297 -16 2154 109 0 3 chr6 9435216 9435510 -179844044 + AluSx SINE Alu 1 293 -19 3542 141 30 73 chr6 9436106 9436816 -179842738 - LTR58 LTR ERV1 0 679 1 230 191 32 48 chr6 9437011 9437074 -179842480 + L2 LINE L2 3191 3252 -61 204 67 0 0 chr6 9437089 9437119 -179842435 + (A)n Simple_repeat Simple_repeat 1 30 0 285 368 0 0 chr6 9437494 9437600 -179841954 - MIR SINE MIR -105 157 52 667 212 21 93 chr6 9437767 9438003 -179841551 + MER20 DNA MER1_type 1 219 0 338 207 134 0 chr6 9438170 9438252 -179841302 + MER94 DNA DNA 1 93 -41 2014 138 125 33 chr6 9439040 9439432 -179840122 - MSTA LTR MaLR 0 428 1 221 136 0 23 chr6 9439797 9439841 -179839713 + (GGGAGA)n Simple_repeat Simple_repeat 4 46 0 192 158 0 0 chr6 9440474 9440512 -179839042 + T-rich Low_complexity Low_complexity 2 39 0 25 31 0 0 chr6 9441216 9441248 -179838306 + AT_rich Low_complexity Low_complexity 1 32 0 2411 136 64 5 chr6 9441437 9441841 -179837713 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr6 9442148 9442170 -179837384 + AT_rich Low_complexity Low_complexity 1 22 0 6079 120 28 19 chr6 9442173 9443618 -179835936 + L1PA13 LINE L1 4695 6157 -6 2322 63 0 13 chr6 9444395 9444698 -179834856 - AluY SINE Alu -12 299 1 237 289 24 0 chr6 9445892 9445975 -179833579 + L2 LINE L2 3203 3287 -26 338 266 12 12 chr6 9446040 9446209 -179833345 + GA-rich Low_complexity Low_complexity 1 169 0 198 103 0 0 chr6 9446607 9446636 -179832918 + (TTCTCC)n Simple_repeat Simple_repeat 6 34 0 3324 163 56 22 chr6 9447011 9447237 -179832317 + L1PB4 LINE L1 5436 5653 -503 1706 143 0 0 chr6 9447237 9447488 -179832066 + AluSc SINE Alu 39 289 -20 3324 163 56 22 chr6 9447488 9447955 -179831599 + L1PB4 LINE L1 5653 6153 -3 702 145 0 0 chr6 9448342 9448480 -179831074 + (TG)n Simple_repeat Simple_repeat 1 138 0 1020 221 14 5 chr6 9449714 9449931 -179829623 + MER20 DNA MER1_type 1 219 0 2364 102 0 6 chr6 9450663 9450978 -179828576 - AluSq SINE Alu 0 313 1 1330 216 14 59 chr6 9452333 9452759 -179826795 - L1MA9 LINE L1 -38 6274 5868 227 143 24 0 chr6 9452763 9452805 -179826749 - L1MA9 LINE L1 -553 5618 5576 * 2318 228 8 4 chr6 9452800 9453323 -179826231 - L1 LINE L1 -1858 4288 3764 447 221 67 67 chr6 9453324 9453473 -179826081 + L2 LINE L2 3159 3307 -6 472 213 133 33 chr6 9453629 9453779 -179825775 - MIR SINE MIR -70 192 28 1947 151 148 3 chr6 9453861 9454233 -179825321 + MSTA LTR MaLR 1 426 -2 181 391 33 11 chr6 9454325 9454417 -179825137 - MIR SINE MIR -92 170 77 23 33 0 0 chr6 9454643 9454673 -179824881 + AT_rich Low_complexity Low_complexity 1 30 0 1854 166 0 34 chr6 9454748 9455068 -179824486 + AluJb SINE Alu 4 312 0 1483 206 81 7 chr6 9455131 9455492 -179824062 - MLT2B1 LTR ERVL 0 397 1 238 299 45 0 chr6 9455859 9455926 -179823628 - L2 LINE L2 -18 3295 3226 28 48 0 0 chr6 9456735 9456777 -179822777 + AT_rich Low_complexity Low_complexity 1 42 0 1304 176 16 80 chr6 9457136 9457793 -179821761 + L1MB1 LINE L1 4981 5659 -509 2321 106 3 0 chr6 9457793 9458105 -179821449 + AluSq SINE Alu 1 313 0 1304 176 16 80 chr6 9458105 9458580 -179820974 + L1MB1 LINE L1 5659 6163 -5 523 170 226 0 chr6 9459405 9459511 -179820043 + FLAM_C SINE Alu 1 130 -3 281 362 27 27 chr6 9461052 9461237 -179818317 - MIR SINE MIR -71 191 7 283 368 17 0 chr6 9461304 9461421 -179818133 + MIR3 SINE MIR 82 200 -8 227 374 24 0 chr6 9461450 9461533 -179818021 - MIR3 SINE MIR -1 207 123 941 228 10 5 chr6 9462168 9462365 -179817189 - MLT1A1 LTR MaLR 0 365 168 908 137 95 6 chr6 9462563 9462731 -179816823 - MLT1A1 LTR MaLR -180 185 3 2511 289 91 43 chr6 9462736 9463408 -179816146 + L1MCc LINE L1 96 734 -5689 1370 228 18 97 chr6 9463408 9463965 -179815589 - LTR40a LTR ERVL -2 517 5 2511 289 91 43 chr6 9463965 9464654 -179814900 + L1MCc LINE L1 734 1523 -4900 1140 261 47 46 chr6 9464770 9465379 -179814175 + L1MCc LINE L1 1605 2290 -4651 1057 55 7 7 chr6 9465379 9465525 -179814029 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 1140 261 47 46 chr6 9465525 9465669 -179813885 + L1MCc LINE L1 2290 2432 -4509 306 148 0 0 chr6 9465808 9465862 -179813692 + (TAA)n Simple_repeat Simple_repeat 2 55 0 311 296 20 0 chr6 9466497 9466595 -179812959 + MIR SINE MIR 150 249 -13 680 266 142 88 chr6 9467111 9467520 -179812034 + L2 LINE L2 1982 2412 -902 23 0 0 0 chr6 9467533 9467556 -179811998 + AT_rich Low_complexity Low_complexity 1 23 0 544 257 13 41 chr6 9467884 9468137 -179811417 - L2 LINE L2 0 3313 3005 329 293 49 118 chr6 9468843 9469130 -179810424 - L2 LINE L2 -2 3311 3045 202 273 23 23 chr6 9469161 9469289 -179810265 + (TA)n Simple_repeat Simple_repeat 2 129 0 460 294 55 14 chr6 9470777 9470995 -179808559 + MER110A LTR ERV1 219 445 -23 22 35 0 0 chr6 9471991 9472020 -179807534 + AT_rich Low_complexity Low_complexity 1 29 0 335 245 43 39 chr6 9472100 9472332 -179807222 + L1M4 LINE L1 1242 1565 -5069 3054 244 82 30 chr6 9472493 9474086 -179805468 + L1MCb LINE L1 1 1735 -4829 1224 209 141 9 chr6 9474086 9474406 -179805148 + MLT1A1 LTR MaLR 4 365 0 3054 244 82 30 chr6 9474406 9474834 -179804720 + L1MCb LINE L1 1735 2139 -4425 874 163 26 0 chr6 9474857 9475010 -179804544 + MER76 LTR ERV 1 157 -531 652 314 80 36 chr6 9475730 9476141 -179803413 + L1ME LINE L1 24 452 -5618 859 299 87 22 chr6 9476165 9476188 -179803366 + L1ME LINE L1 93 113 -5967 2127 124 0 3 chr6 9476188 9476487 -179803067 - AluSx SINE Alu -14 298 1 859 299 87 22 chr6 9476487 9477691 -179801863 + L1ME LINE L1 113 1521 -4559 976 264 80 25 chr6 9477711 9478743 -179800811 - L1MCc LINE L1 -4520 2421 1246 593 219 11 11 chr6 9478758 9478936 -179800618 + CT-rich Low_complexity Low_complexity 1 178 0 570 155 50 0 chr6 9478947 9479108 -179800446 + CT-rich Low_complexity Low_complexity 2 170 0 288 338 183 21 chr6 9479178 9479462 -179800092 - L1MCc LINE L1 -5226 1197 868 702 293 103 36 chr6 9479660 9480121 -179799433 - L1MCc LINE L1 -5842 581 79 1371 163 132 0 chr6 9480121 9480274 -179799280 - AluJo SINE Alu -21 291 160 201 39 0 0 chr6 9480274 9480300 -179799254 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 9480300 9480403 -179799151 - AluJo SINE Alu -152 160 1 702 293 103 36 chr6 9480403 9480464 -179799090 - L1MCc LINE L1 -6344 79 24 6470 45 13 0 chr6 9480667 9481454 -179798100 - L1PA7 LINE L1 -12 6142 5346 551 63 25 0 chr6 9482148 9482227 -179797327 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 211 308 103 17 chr6 9483031 9483148 -179796406 - MIR3 SINE MIR -9 199 73 419 280 84 109 chr6 9483203 9484370 -179795184 + L1MEc LINE L1 36 1173 -5223 408 254 31 6 chr6 9484583 9484816 -179794738 + L1MEc LINE L1 2179 4018 -2197 954 241 72 4 chr6 9485329 9485565 -179793989 + HERVL40 LTR ERVL 5279 5530 0 995 285 51 42 chr6 9485565 9485919 -179793635 + LTR40b LTR ERVL 1 357 -105 297 169 0 0 chr6 9485920 9485979 -179793575 + CT-rich Low_complexity Low_complexity 1 59 0 255 125 0 0 chr6 9485974 9486014 -179793540 + (TCCCC)n Simple_repeat Simple_repeat 2 41 0 * 504 231 9 36 chr6 9486017 9486218 -179793336 - L1MEc LINE L1 -4509 1938 1734 387 161 0 0 chr6 9486227 9486294 -179793260 + LTR40a LTR ERVL 411 519 0 1583 234 22 80 chr6 9486305 9486766 -179792788 + L1MC4a LINE L1 6187 6604 -1204 185 65 32 0 chr6 9486766 9486797 -179792757 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1583 234 22 80 chr6 9486797 9486960 -179792594 + L1MC4a LINE L1 6604 6775 -1033 321 201 112 45 chr6 9487040 9487174 -179792380 - L1MEc LINE L1 -3239 2976 2834 376 191 48 0 chr6 9487179 9487263 -179792291 - L1MEc LINE L1 -4316 2080 1993 1193 299 66 42 chr6 9487373 9487767 -179791787 - L1MEc LINE L1 -4578 1818 1435 2273 115 0 0 chr6 9487767 9488079 -179791475 - AluSq SINE Alu -1 312 1 1193 299 66 42 chr6 9488079 9488658 -179790896 - L1MEc LINE L1 -4961 1435 822 422 55 0 0 chr6 9488658 9488713 -179790841 - MLT2A1 LTR ERVL 0 453 399 203 130 22 22 chr6 9488758 9488804 -179790750 + (TA)n Simple_repeat Simple_repeat 2 47 0 271 83 83 0 chr6 9488813 9488861 -179790693 - HERVL LTR ERVL -144 5510 5459 2679 88 39 5 chr6 9488893 9489277 -179790277 - MLT2A1 LTR ERVL -44 400 4 44589 68 7 8 chr6 9489280 9494939 -179784615 - HERVL-A1 LTR ERVL 0 5654 2 317 113 38 0 chr6 9494940 9494993 -179784561 - MLT2A1 LTR ERVL 0 453 399 297 230 0 0 chr6 9495013 9495191 -179784363 + (TA)n Simple_repeat Simple_repeat 1 178 0 326 194 32 0 chr6 9495192 9495444 -179784110 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 380 208 0 5 chr6 9495457 9495830 -179783724 + (TA)n Simple_repeat Simple_repeat 1 371 0 2822 79 26 5 chr6 9495831 9496222 -179783332 - MLT2A1 LTR ERVL -45 399 1 1379 274 38 84 chr6 9496223 9497043 -179782511 - L1MEc LINE L1 -5571 825 44 350 148 108 37 chr6 9497042 9497151 -179782403 + L1ME LINE L1 5540 5660 -475 * 1052 220 11 51 chr6 9497149 9497400 -179782154 + L1MC4 LINE L1 6766 7007 -1035 2074 103 7 13 chr6 9497400 9497700 -179781854 + AluSg1 SINE Alu 1 298 -11 1052 220 11 51 chr6 9497700 9497721 -179781833 + L1MC4 LINE L1 7007 7027 -1015 542 243 80 26 chr6 9497726 9497908 -179781646 + MER63 DNA MER1_type 4 1673 -15 1363 237 130 75 chr6 9497920 9498359 -179781195 + L1MC4 LINE L1 7022 7522 -520 1864 162 52 16 chr6 9498359 9498742 -179780812 - MLT2C1 LTR ERVL 0 397 1 1363 237 130 75 chr6 9498742 9499071 -179780483 + L1MC4 LINE L1 7522 7832 -210 1219 192 75 99 chr6 9499133 9499549 -179780005 + MLT1D LTR MaLR 48 453 -52 1278 201 7 18 chr6 9499573 9499847 -179779707 - L1PA16 LINE L1 -3 6163 5893 204 314 20 0 chr6 9502999 9503050 -179776504 - L2 LINE L2 -78 3194 3143 1658 228 20 15 chr6 9503934 9504328 -179775226 - MSTD LTR MaLR 0 396 1 327 85 0 0 chr6 9505028 9505075 -179774479 + (CA)n Simple_repeat Simple_repeat 2 48 0 1557 155 72 72 chr6 9505948 9506261 -179773293 + THE1C LTR MaLR 1 316 -59 2464 54 3 0 chr6 9506261 9506557 -179772997 + AluY SINE Alu 1 297 -14 1557 155 72 72 chr6 9506557 9506618 -179772936 + THE1C LTR MaLR 315 375 0 705 131 0 0 chr6 9506768 9506867 -179772687 + AluS SINE Alu 1 99 -213 973 114 0 0 chr6 9506871 9507002 -179772552 - AluSg/x SINE Alu -36 276 146 321 280 30 10 chr6 9508868 9508968 -179770586 + MER5A DNA MER1_type 87 188 -1 2152 109 0 3 chr6 9510996 9511289 -179768265 - AluSc SINE Alu -17 292 1 258 32 0 0 chr6 9511345 9511376 -179768178 + (CA)n Simple_repeat Simple_repeat 2 32 0 194 253 0 11 chr6 9511658 9511753 -179767801 + (TA)n Simple_repeat Simple_repeat 1 94 0 22 35 0 0 chr6 9511756 9511785 -179767769 + AT_rich Low_complexity Low_complexity 1 29 0 242 293 7 82 chr6 9512087 9512234 -179767320 + L1ME LINE L1 5625 5760 -361 872 244 71 0 chr6 9512802 9513027 -179766527 - MLT1E1 LTR MaLR -1 653 413 2378 143 26 3 chr6 9513027 9513406 -179766148 - MSTA LTR MaLR 0 428 41 226 236 228 47 chr6 9513422 9513549 -179766005 - MLT1E1 LTR MaLR -235 389 240 475 183 0 0 chr6 9513630 9513712 -179765842 - MLT1E1 LTR MaLR -571 83 2 2429 71 0 0 chr6 9515192 9515488 -179764066 + AluY SINE Alu 1 296 -15 2145 167 0 8 chr6 9515646 9516011 -179763543 - MLT1A1 LTR MaLR 0 365 4 287 219 24 0 chr6 9517563 9517645 -179761909 - L1MC4 LINE L1 -1344 6698 6615 435 224 43 17 chr6 9517691 9517807 -179761747 - L1MA9 LINE L1 -93 6219 6101 * 1495 169 21 71 chr6 9517799 9518136 -179761418 + L1MA9 LINE L1 5575 5894 -418 2454 222 53 19 chr6 9518257 9518882 -179760672 + MER82 DNA MER2_type 2 647 -6 335 280 56 28 chr6 9519219 9519326 -179760228 + L2 LINE L2 3200 3309 -4 1786 151 7 10 chr6 9519558 9519856 -179759698 - AluSq SINE Alu -16 297 1 252 314 9 38 chr6 9520380 9520485 -179759069 - MER5A DNA MER1_type -3 186 85 979 175 0 0 chr6 9521037 9521197 -179758357 + FRAM SINE Alu 2 161 -5 426 121 0 0 chr6 9521281 9521347 -179758207 + (CA)n Simple_repeat Simple_repeat 2 67 0 246 291 58 0 chr6 9523701 9523787 -179755767 + MIR SINE MIR 158 248 -14 192 229 0 21 chr6 9523820 9523868 -179755686 + L2 LINE L2 3266 3312 -1 348 334 49 0 chr6 9524047 9524170 -179755384 - MIR SINE MIR -65 143 34 407 331 66 13 chr6 9524625 9524776 -179754778 + L3 LINE CR1 1308 1466 -111 4719 59 3 0 chr6 9526974 9527567 -179751987 + L1PA6 LINE L1 5560 6154 0 261 74 37 19 chr6 9530175 9530229 -179749325 + (CA)n Simple_repeat Simple_repeat 2 56 0 2410 266 124 24 chr6 9530498 9531738 -179747816 - L1ME3A LINE L1 -15 6155 5041 2262 108 7 7 chr6 9531738 9532045 -179747509 - AluSx SINE Alu -5 307 1 2410 266 124 24 chr6 9532045 9533342 -179746212 - L1ME3A LINE L1 -1129 5041 3353 931 281 129 14 chr6 9533353 9533918 -179745636 - L1ME3A LINE L1 -3212 2934 2305 384 298 62 13 chr6 9534503 9534776 -179744778 - L1MC/D LINE L1 -662 5512 5258 364 281 113 45 chr6 9535115 9535407 -179744147 + L1MC4a LINE L1 2664 2975 -3171 1258 256 149 47 chr6 9535458 9536227 -179743327 + L1MC4a LINE L1 5383 6230 -1578 1434 285 118 16 chr6 9536429 9537135 -179742419 + L1MC4a LINE L1 6483 7260 -548 256 262 0 106 chr6 9537230 9537371 -179742183 + LTR16A LTR ERVL 93 218 -232 628 222 39 6 chr6 9537440 9537620 -179741934 + LTR16A1 LTR ERVL 272 457 0 488 260 64 101 chr6 9537704 9538281 -179741273 + L1MC4 LINE L1 7470 8025 -17 661 229 123 50 chr6 9538308 9538610 -179740944 + L1MD3 LINE L1 6945 7268 -727 368 308 0 0 chr6 9538616 9538723 -179740831 + MLT1F1 LTR MaLR 1 107 -460 1869 209 117 13 chr6 9538726 9539272 -179740282 + L1MD3 LINE L1 6239 6338 -6 2246 138 74 10 chr6 9539426 9539832 -179739722 + MSTB1 LTR MaLR 1 432 0 330 260 65 22 chr6 9539913 9540144 -179739410 - L1M4 LINE L1 -2867 3279 3039 701 172 14 0 chr6 9541002 9541147 -179738407 + GA-rich Low_complexity Low_complexity 3 149 0 1050 115 0 16 chr6 9541150 9541332 -179738222 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chr6 9541505 9541526 -179738028 + AT_rich Low_complexity Low_complexity 1 21 0 264 231 0 0 chr6 9541981 9542033 -179737521 - L2 LINE L2 -1 3312 3261 357 306 65 9 chr6 9543298 9543406 -179736148 + MIR SINE MIR 33 146 -116 257 347 41 24 chr6 9544173 9544343 -179735211 + MIR3 SINE MIR 28 200 -8 28 29 0 0 chr6 9545018 9545053 -179734501 + AT_rich Low_complexity Low_complexity 1 35 0 264 167 0 0 chr6 9546761 9546809 -179732745 + (TA)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr6 9546809 9546844 -179732710 + (TG)n Simple_repeat Simple_repeat 2 36 0 264 326 22 0 chr6 9546912 9547004 -179732550 + MIR SINE MIR 38 131 -77 194 174 22 0 chr6 9547057 9547103 -179732451 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2121 119 3 3 chr6 9550154 9550449 -179729105 - AluY SINE Alu -16 295 1 200 365 16 0 chr6 9552322 9552385 -179727169 - MIR SINE MIR -110 98 35 343 274 105 20 chr6 9553121 9553274 -179726280 - MIR3 SINE MIR -2 206 41 269 279 11 0 chr6 9553340 9553446 -179726108 + GA-rich Low_complexity Low_complexity 1 185 0 234 227 106 0 chr6 9556038 9556104 -179723450 - MIR SINE MIR -56 206 134 292 289 74 44 chr6 9556674 9556809 -179722745 - MIR3 SINE MIR -28 180 42 1915 202 84 16 chr6 9557251 9557702 -179721852 + LTR48 LTR ERV1 1 482 -305 329 256 81 0 chr6 9557718 9557804 -179721750 + Tigger4(Zombi) DNA MER2_type 1 93 -2638 1837 162 28 0 chr6 9557839 9558129 -179721425 + AluJb SINE Alu 5 302 -10 301 173 0 0 chr6 9558141 9558193 -179721361 + L1MC4 LINE L1 6652 6703 -1339 180 176 0 0 chr6 9558193 9558227 -179721327 + (TATG)n Simple_repeat Simple_repeat 2 35 0 3394 138 16 12 chr6 9558229 9558792 -179720762 + Tigger4(Zombi) DNA MER2_type 2167 2731 0 704 207 47 21 chr6 9558819 9559012 -179720542 + LTR48 LTR ERV1 590 787 0 210 143 0 0 chr6 9559932 9559967 -179719587 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr6 9560026 9560047 -179719507 + (CA)n Simple_repeat Simple_repeat 2 22 0 183 364 41 16 chr6 9561291 9561412 -179718142 - L2 LINE L2 -23 3290 3167 1741 112 9 0 chr6 9562747 9562979 -179716575 + AluSg SINE Alu 1 234 -76 23 0 0 0 chr6 9563059 9563082 -179716472 + AT_rich Low_complexity Low_complexity 1 23 0 327 230 30 96 chr6 9563663 9563798 -179715756 + LTR16A1 LTR ERVL 320 445 -12 374 309 80 64 chr6 9563803 9564227 -179715327 + L1 LINE L1 3916 4346 -1800 21 0 0 0 chr6 9564235 9564256 -179715298 + AT_rich Low_complexity Low_complexity 1 21 0 353 208 17 22 chr6 9564535 9564713 -179714841 + (TA)n Simple_repeat Simple_repeat 2 178 0 542 267 124 10 chr6 9564936 9565243 -179714311 + L1M4 LINE L1 2148 2489 -3657 * 984 197 11 0 chr6 9565238 9565416 -179714138 + L1MDa LINE L1 10 189 -6351 * 2292 189 50 45 chr6 9565413 9566099 -179713455 + L1MDa LINE L1 1055 1743 -4797 236 223 0 39 chr6 9566103 9566206 -179713348 + GA-rich Low_complexity Low_complexity 3 101 0 744 140 19 76 chr6 9566221 9566336 -179713218 + L1MDa LINE L1 1791 1896 -4644 2725 26 3 0 chr6 9566336 9566646 -179712908 + AluY SINE Alu 1 311 0 744 140 19 76 chr6 9566646 9566687 -179712867 + L1MDa LINE L1 1896 1938 -4602 24 0 0 0 chr6 9566847 9566871 -179712683 + AT_rich Low_complexity Low_complexity 1 24 0 202 136 0 23 chr6 9567045 9567089 -179712465 + (TAAAAA)n Simple_repeat Simple_repeat 2 44 0 2250 113 0 13 chr6 9567744 9568054 -179711500 + AluSg SINE Alu 2 307 -3 21 71 0 0 chr6 9568459 9568501 -179711053 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr6 9568637 9568669 -179710885 + AT_rich Low_complexity Low_complexity 1 32 0 1997 138 53 0 chr6 9570011 9570330 -179709224 - MER7A DNA MER2_type -12 334 1 24 0 0 0 chr6 9571562 9571586 -179707968 + AT_rich Low_complexity Low_complexity 1 24 0 359 234 29 91 chr6 9571603 9571778 -179707776 - MLT1K LTR MaLR -14 574 411 447 87 0 0 chr6 9572672 9572741 -179706813 + (CA)n Simple_repeat Simple_repeat 2 70 0 1885 175 46 3 chr6 9572853 9573224 -179706330 + MLT1B LTR MaLR 1 387 -3 2045 123 33 0 chr6 9574974 9575275 -179704279 + AluSq SINE Alu 1 311 -2 657 259 85 0 chr6 9575558 9575759 -179703795 + MER46C DNA MER2_type 3 220 -118 610 288 65 78 chr6 9575794 9576378 -179703176 + L2 LINE L2 2575 3156 -157 390 42 0 0 chr6 9576378 9576426 -179703128 + (TATG)n Simple_repeat Simple_repeat 3 50 0 610 288 65 78 chr6 9576426 9576565 -179702989 + L2 LINE L2 3156 3295 -18 2198 50 8 0 chr6 9578506 9578766 -179700788 + AluY SINE Alu 38 299 -12 3688 279 80 39 chr6 9579105 9581439 -179698115 + L1MEc LINE L1 35 2463 -3933 499 279 19 13 chr6 9582812 9582966 -179696588 + L2 LINE L2 3159 3313 0 33 0 0 0 chr6 9584251 9584284 -179695270 + AT_rich Low_complexity Low_complexity 1 33 0 206 327 0 0 chr6 9584578 9584633 -179694921 + G-rich Low_complexity Low_complexity 1 55 0 429 355 71 24 chr6 9584698 9585036 -179694518 + LTR16A LTR ERVL 92 445 -5 505 319 35 45 chr6 9585103 9585363 -179694191 - MIR SINE MIR -11 251 6 287 309 0 0 chr6 9585434 9585518 -179694036 + L1MEc LINE L1 3708 3791 -2424 336 356 52 7 chr6 9585550 9585859 -179693695 - L1MEc LINE L1 -4586 1810 1488 201 74 0 0 chr6 9586692 9586719 -179692835 + (TTCTC)n Simple_repeat Simple_repeat 4 30 0 5590 93 2 6 chr6 9587015 9587809 -179691745 + L1PA13 LINE L1 5372 6162 -1 25 31 0 0 chr6 9588432 9588464 -179691090 + AT_rich Low_complexity Low_complexity 1 32 0 208 195 167 34 chr6 9588636 9588734 -179690820 - MIR SINE MIR -27 181 75 1053 156 17 0 chr6 9589951 9590131 -179689423 - L1PA16 LINE L1 -9 6157 5975 2125 116 0 0 chr6 9592370 9592655 -179686899 + AluSc SINE Alu 1 285 -24 335 220 154 0 chr6 9592717 9592808 -179686746 - MIR SINE MIR -86 176 72 1697 155 0 126 chr6 9593128 9593291 -179686263 + MLT1B LTR MaLR 1 183 -207 2137 99 0 7 chr6 9593291 9593603 -179685951 - AluSc SINE Alu 0 310 1 1697 155 0 126 chr6 9593603 9593884 -179685670 + MLT1B LTR MaLR 183 390 0 1887 167 7 0 chr6 9594262 9594568 -179684986 - AluJb SINE Alu -4 308 1 371 287 0 0 chr6 9594588 9594675 -179684879 + MIR3 SINE MIR 92 178 -30 396 351 71 54 chr6 9595039 9595278 -179684276 - L2 LINE L2 -13 3259 3017 243 301 32 32 chr6 9595534 9595627 -179683927 + MLT1J LTR MaLR 226 318 -193 507 177 0 0 chr6 9597487 9597566 -179681988 + AluSg/x SINE Alu 210 288 -21 2002 120 14 3 chr6 9598012 9598303 -179681251 + AluSp SINE Alu 1 294 -19 1315 132 14 5 chr6 9598303 9598516 -179681038 + L1PB3 LINE L1 5938 6152 -2 333 355 17 17 chr6 9598540 9598712 -179680842 - L2 LINE L2 -1303 2011 1840 1269 251 116 30 chr6 9598847 9599338 -179680216 + MLT1F LTR MaLR 3 535 -7 5033 157 155 55 chr6 9599670 9601120 -179678434 - pTR5 LTR ERV1 0 2438 743 961 143 0 0 chr6 9601120 9601267 -179678287 + AluSg/x SINE Alu 166 312 0 189 0 0 0 chr6 9601334 9601355 -179678199 + (A)n Simple_repeat Simple_repeat 1 21 0 245 293 139 43 chr6 9601355 9601563 -179677991 - L2 LINE L2 -2418 896 669 2190 95 3 43 chr6 9601831 9602157 -179677397 - AluSp SINE Alu 0 313 1 220 320 117 0 chr6 9602912 9603015 -179676539 + L2 LINE L2 3199 3313 0 1566 201 40 3 chr6 9603072 9603371 -179676183 - AluJo SINE Alu -2 310 1 22 35 0 0 chr6 9603470 9603499 -179676055 + AT_rich Low_complexity Low_complexity 1 29 0 593 156 18 0 chr6 9603857 9603966 -179675588 - MSTD LTR MaLR -1 395 285 2664 224 31 9 chr6 9604239 9604686 -179674868 - L1 LINE L1 -2952 3194 2723 2741 216 70 20 chr6 9604686 9605372 -179674182 - MER72 LTR ERV1 -2 720 1 2664 224 31 9 chr6 9605372 9605666 -179673888 - L1 LINE L1 -3423 2723 2437 358 333 89 42 chr6 9605672 9605885 -179673669 + L1MEc LINE L1 557 779 -6046 1290 196 156 19 chr6 9606099 9606472 -179673082 + MSTB LTR MaLR 1 424 -2 5396 163 25 57 chr6 9606476 9606521 -179673033 + MSTB-int LTR MaLR 3 48 -1532 1890 132 50 4 chr6 9606521 9606801 -179672753 + AluSp SINE Alu 2 294 -19 5396 163 25 57 chr6 9606801 9607918 -179671636 + MSTB-int LTR MaLR 48 1128 -452 886 286 36 47 chr6 9608203 9609009 -179670545 + L1MEc LINE L1 1082 1918 -4726 25 75 0 0 chr6 9609106 9609159 -179670395 + AT_rich Low_complexity Low_complexity 1 53 0 199 316 63 42 chr6 9609269 9609318 -179670236 + MIR3 SINE MIR 94 140 -68 1995 147 31 6 chr6 9609318 9609673 -179669881 + MER47A DNA MER2_type 1 364 -2 199 316 63 42 chr6 9609673 9609718 -179669836 + MIR3 SINE MIR 140 190 -18 248 226 0 32 chr6 9616240 9616302 -179663252 - MIR SINE MIR 0 262 203 2512 84 3 0 chr6 9617035 9617343 -179662211 - AluY SINE Alu 0 311 3 462 281 77 77 chr6 9617352 9617711 -179661843 + L1MEc LINE L1 3186 3547 -3097 2057 139 0 7 chr6 9617711 9618014 -179661540 + AluSg SINE Alu 1 301 -9 462 281 77 77 chr6 9618014 9618085 -179661469 + L1MEc LINE L1 3546 3616 -3028 324 380 37 53 chr6 9619308 9619632 -179659922 + L1MEc LINE L1 4132 4446 -2198 1910 107 13 60 chr6 9619632 9619966 -179659588 + AluSx SINE Alu 2 321 0 324 380 37 53 chr6 9619966 9620209 -179659345 + L1MEc LINE L1 4446 4691 -1953 9165 194 22 28 chr6 9620497 9622770 -179656784 + L1 LINE L1 3115 5373 -773 512 190 10 10 chr6 9622871 9622971 -179656583 - AluY SINE Alu -210 100 1 247 301 151 0 chr6 9624600 9624673 -179654881 - L2 LINE L2 -4 3309 3226 2203 121 0 3 chr6 9624849 9625155 -179654399 + AluSq SINE Alu 1 305 -8 488 278 73 37 chr6 9625308 9625733 -179653821 - L1M2 LINE L1 -509 5657 5256 326 26 0 0 chr6 9625941 9625979 -179653575 - L1PA10 LINE L1 -12 6156 6119 276 30 0 0 chr6 9626143 9626176 -179653378 + (TTA)n Simple_repeat Simple_repeat 1 33 0 257 338 15 44 chr6 9626177 9626313 -179653241 - MIR SINE MIR -71 137 6 296 322 51 25 chr6 9626321 9626439 -179653115 + L2 LINE L2 3143 3263 -9 530 298 11 27 chr6 9626626 9626814 -179652740 - MER5A DNA MER1_type -1 188 4 191 337 204 17 chr6 9628622 9628794 -179650760 - L2 LINE L2 -388 2926 2723 232 367 15 45 chr6 9628836 9629035 -179650519 - L2 LINE L2 -571 2743 2551 256 248 124 26 chr6 9629082 9629195 -179650359 - L2 LINE L2 -927 2387 2264 25 31 0 0 chr6 9630161 9630193 -179649361 + AT_rich Low_complexity Low_complexity 1 32 0 2056 139 0 3 chr6 9630605 9630906 -179648648 - AluJb SINE Alu -12 300 1 1630 179 17 7 chr6 9631570 9631861 -179647693 + AluJb SINE Alu 1 294 -18 309 242 21 86 chr6 9631940 9632126 -179647428 + L1M4 LINE L1 4493 4666 -1480 262 326 0 0 chr6 9632177 9632263 -179647291 - MIR SINE MIR -97 165 80 876 307 43 12 chr6 9632515 9633092 -179646462 + L1MC/D LINE L1 2236 2830 -3316 366 341 72 49 chr6 9633289 9633562 -179645992 + L1MC/D LINE L1 5359 5635 -486 198 0 0 0 chr6 9633979 9634001 -179645553 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 724 289 9 5 chr6 9634570 9634781 -179644773 - MIR SINE MIR -3 259 48 355 125 23 68 chr6 9634912 9635000 -179644554 + MER74A LTR ERVL 6 89 -469 * 1248 164 45 39 chr6 9634975 9635261 -179644293 + MER74A LTR ERVL 256 543 -15 2753 7 0 0 chr6 9636295 9636595 -179642959 + AluYa5 SINE Alu 1 300 -11 308 282 219 25 chr6 9636838 9637016 -179642538 - MIR SINE MIR -6 256 45 1557 167 44 20 chr6 9638329 9638623 -179640931 + AluJb SINE Alu 1 301 -11 378 219 106 53 chr6 9639096 9639247 -179640307 + MER5A DNA MER1_type 1 159 -30 7264 112 145 37 chr6 9639442 9640965 -179638589 - pTR5 LTR ERV1 -10 2428 742 704 127 0 18 chr6 9641789 9641899 -179637655 + FLAM_C SINE Alu 23 130 -13 1798 102 125 0 chr6 9641904 9642168 -179637386 + AluSp SINE Alu 1 297 -16 357 197 6 34 chr6 9642190 9642368 -179637186 + (TA)n Simple_repeat Simple_repeat 1 173 0 292 258 0 31 chr6 9642386 9642483 -179637071 + (TA)n Simple_repeat Simple_repeat 1 94 0 1135 245 74 12 chr6 9642848 9643045 -179636509 - MLT1A2 LTR MaLR -2 372 146 2120 112 20 7 chr6 9643045 9643349 -179636205 - AluSc SINE Alu -1 308 1 1135 245 74 12 chr6 9643349 9643477 -179636077 - MLT1A2 LTR MaLR -228 146 27 2151 120 27 0 chr6 9643482 9643782 -179635772 + AluSx SINE Alu 1 308 -4 2150 123 0 19 chr6 9646101 9646409 -179633145 + AluSq SINE Alu 1 302 -11 4567 195 27 48 chr6 9646590 9647642 -179631912 - MLT1A1-int LTR MaLR -706 1029 1 534 241 0 0 chr6 9647642 9647754 -179631800 - MLT1A1 LTR MaLR 0 365 254 364 89 0 0 chr6 9647753 9647809 -179631745 - MLT1A1 LTR MaLR -309 56 1 * 219 351 106 0 chr6 9647809 9647903 -179631651 + MIR SINE MIR 127 230 -32 * 379 324 9 0 chr6 9647902 9648013 -179631541 + L2 LINE L2 3201 3312 -1 297 75 0 0 chr6 9648860 9648900 -179630654 + (TG)n Simple_repeat Simple_repeat 1 40 0 276 200 0 0 chr6 9649563 9649628 -179629926 + GA-rich Low_complexity Low_complexity 4 68 0 189 74 0 0 chr6 9649636 9649663 -179629891 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chr6 9650483 9650506 -179629048 + (CCA)n Simple_repeat Simple_repeat 2 24 0 333 0 0 0 chr6 9651231 9651268 -179628286 + (TG)n Simple_repeat Simple_repeat 1 37 0 373 291 97 18 chr6 9651576 9651751 -179627803 - MIR3 SINE MIR -18 190 15 288 0 0 0 chr6 9652050 9652082 -179627472 + (TG)n Simple_repeat Simple_repeat 2 33 0 1966 161 3 3 chr6 9652545 9652856 -179626698 + AluJo SINE Alu 1 311 -1 698 242 59 11 chr6 9652906 9653092 -179626462 - MIR SINE MIR -34 228 34 321 26 0 0 chr6 9653551 9653589 -179625965 + (CA)n Simple_repeat Simple_repeat 2 39 0 2151 89 0 4 chr6 9654020 9654289 -179625265 + AluSq SINE Alu 1 268 -45 236 30 30 0 chr6 9655566 9655599 -179623955 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 832 188 0 7 chr6 9655603 9655747 -179623807 - FRAM SINE Alu -30 146 4 2145 122 3 0 chr6 9655968 9656263 -179623291 + AluSx SINE Alu 1 296 -16 2140 92 4 0 chr6 9657064 9657337 -179622217 + AluSq SINE Alu 1 274 -39 1897 169 102 37 chr6 9657512 9657726 -179621828 - MSTA LTR MaLR 0 428 229 2346 94 0 13 chr6 9657726 9658033 -179621521 - AluY SINE Alu -8 303 1 1897 169 102 37 chr6 9658033 9658220 -179621334 - MSTA LTR MaLR -199 229 1 2118 101 4 0 chr6 9658290 9658568 -179620986 - AluSc SINE Alu -30 279 1 9274 147 11 36 chr6 9658570 9660158 -179619396 - MSTA-int LTR MaLR -30 1550 3 1807 162 128 8 chr6 9660160 9660512 -179619042 - MSTA LTR MaLR 0 428 35 180 0 0 0 chr6 9661973 9661993 -179617561 + (CA)n Simple_repeat Simple_repeat 2 21 0 2108 108 0 14 chr6 9662653 9662976 -179616578 + AluSx SINE Alu 1 319 0 1488 177 17 33 chr6 9664170 9664469 -179615085 + AluJo SINE Alu 11 304 -8 22 0 0 0 chr6 9666094 9666116 -179613438 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 86 53 chr6 9666142 9666227 -179613327 - MIR SINE MIR -75 187 93 2222 116 0 0 chr6 9666227 9666521 -179613033 + AluSg SINE Alu 1 294 -16 235 311 86 53 chr6 9666521 9666586 -179612968 - MIR SINE MIR -169 93 32 2258 99 0 0 chr6 9668284 9668578 -179610976 - AluSg1 SINE Alu -11 298 5 186 0 88 0 chr6 9668653 9668687 -179610867 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1943 137 0 33 chr6 9669109 9669408 -179610146 - AluJb SINE Alu -23 289 1 1141 163 153 89 chr6 9670895 9671177 -179608377 + AluJb SINE Alu 2 301 -1 2307 101 3 0 chr6 9672426 9672722 -179606832 - AluSg SINE Alu -13 297 1 1799 179 102 43 chr6 9672805 9673179 -179606375 + MSTD LTR MaLR 1 396 0 555 121 35 103 chr6 9673623 9673687 -179605867 - MSTC LTR MaLR -320 108 54 2284 113 0 0 chr6 9673687 9673980 -179605574 - AluSg SINE Alu -17 293 1 555 121 35 103 chr6 9673980 9674031 -179605523 - MSTC LTR MaLR -374 54 1 22 0 0 0 chr6 9674694 9674716 -179604838 + AT_rich Low_complexity Low_complexity 1 22 0 667 213 87 14 chr6 9676677 9676851 -179602703 + LTR33 LTR ERVL 15 178 -343 1820 87 0 0 chr6 9677508 9677738 -179601816 + AluSg/x SINE Alu 80 309 -1 188 65 0 32 chr6 9678486 9678517 -179601037 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1171 42 0 0 chr6 9680762 9680904 -179598650 - AluY SINE Alu -8 303 162 336 24 0 0 chr6 9681076 9681117 -179598437 + (CA)n Simple_repeat Simple_repeat 2 42 0 235 348 45 9 chr6 9681598 9681710 -179597844 + L2 LINE L2 3178 3293 -20 383 300 61 118 chr6 9681727 9681990 -179597564 - MIR SINE MIR -1 261 14 1534 256 113 39 chr6 9682476 9683014 -179596540 - MLT1E LTR MaLR -4 589 12 728 257 113 55 chr6 9683194 9683505 -179596049 + MLT1H LTR MaLR 21 349 -200 332 221 3 13 chr6 9683558 9683653 -179595901 + MLT1H LTR MaLR 461 549 0 22 35 0 0 chr6 9685000 9685029 -179594525 + AT_rich Low_complexity Low_complexity 1 29 0 512 281 74 65 chr6 9685176 9685382 -179594172 + HAL1b LINE L1 96 299 -1049 2304 101 7 7 chr6 9685382 9685690 -179593864 + AluY SINE Alu 1 308 -3 512 281 74 65 chr6 9685690 9685913 -179593641 + HAL1b LINE L1 299 529 -819 25 0 0 0 chr6 9686137 9686162 -179593392 + AT_rich Low_complexity Low_complexity 1 25 0 571 168 7 121 chr6 9686169 9686318 -179593236 - FLAM_C SINE Alu -1 132 1 34 24 0 0 chr6 9686474 9686515 -179593039 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr6 9686650 9686681 -179592873 + AT_rich Low_complexity Low_complexity 1 31 0 348 286 18 9 chr6 9686917 9687029 -179592525 + L1MC/D LINE L1 4030 4142 -2004 383 314 100 48 chr6 9687070 9687509 -179592045 + L1MC/D LINE L1 4245 4706 -1440 266 291 142 35 chr6 9687576 9687950 -179591604 + L1MC/D LINE L1 4807 5220 -926 288 294 12 0 chr6 9688059 9688144 -179591410 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 399 213 13 60 chr6 9688150 9688300 -179591254 + L1MC/D LINE L1 5346 5488 -2320 587 177 0 0 chr6 9688366 9688462 -179591092 + L1MA5A LINE L1 6196 6291 -6 794 265 87 8 chr6 9688515 9688779 -179590775 - L1ME3A LINE L1 -215 5955 5671 2124 97 4 0 chr6 9689295 9689599 -179589955 - AluSc SINE Alu 0 305 1 2214 110 0 17 chr6 9690151 9690452 -179589102 + AluSc SINE Alu 1 296 -13 227 286 0 0 chr6 9690697 9690753 -179588801 + MIR SINE MIR 94 149 -113 854 127 0 0 chr6 9690756 9690874 -179588680 + FLAM_C SINE Alu 1 118 -15 252 0 0 0 chr6 9690877 9690905 -179588649 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2272 96 0 7 chr6 9690975 9691277 -179588277 - AluSc SINE Alu -9 300 1 2053 242 36 16 chr6 9692944 9693383 -179586171 + LTR40a LTR ERVL 6 458 -61 2105 234 89 29 chr6 9693383 9693942 -179585612 + MLT1E LTR MaLR 1 593 0 2053 242 36 16 chr6 9693942 9694006 -179585548 + LTR40a LTR ERVL 458 519 0 1526 256 7 44 chr6 9694019 9694425 -179585129 + HERVL40 LTR ERVL 17 407 -5123 3400 297 35 12 chr6 9694478 9695448 -179584106 + HERVL40 LTR ERVL 2892 3883 -1647 2040 217 80 59 chr6 9695448 9696195 -179583359 + L1M4b LINE L1 1024 1785 -5070 1939 114 0 22 chr6 9696197 9696469 -179583085 + AluSx SINE Alu 1 266 -46 548 86 0 25 chr6 9696469 9696550 -179583004 + Alu SINE Alu 227 305 -4 1475 272 81 44 chr6 9696553 9697274 -179582280 + L1M4b LINE L1 1789 2687 -4451 4091 240 41 52 chr6 9697304 9699112 -179580442 + L1MEc LINE L1 1734 3476 -2739 204 217 0 22 chr6 9700642 9700688 -179578866 + MIR3 SINE MIR 149 193 -15 408 348 98 5 chr6 9701842 9702066 -179577488 - MIR SINE MIR -3 259 15 1679 214 81 19 chr6 9702260 9702782 -179576772 - MLT1F LTR MaLR 0 542 3 311 266 91 32 chr6 9702866 9703058 -179576496 + MIR SINE MIR 16 216 -46 786 126 44 0 chr6 9703061 9703196 -179576358 + L1MA5A LINE L1 6154 6294 -3 25 0 0 0 chr6 9703263 9703288 -179576266 + AT_rich Low_complexity Low_complexity 1 25 0 461 314 44 40 chr6 9704892 9705118 -179574436 - MIR SINE MIR -1 261 35 3482 200 63 24 chr6 9705252 9707923 -179571631 - L1MB3 LINE L1 -310 6109 3170 6836 174 66 16 chr6 9707935 9709760 -179569794 - L1MB3 LINE L1 -3884 2500 370 24 0 0 0 chr6 9710454 9710478 -179569076 + AT_rich Low_complexity Low_complexity 1 24 0 216 246 14 14 chr6 9711990 9712059 -179567495 + (TA)n Simple_repeat Simple_repeat 1 69 0 369 0 0 0 chr6 9712210 9712251 -179567303 + (TG)n Simple_repeat Simple_repeat 1 41 0 270 116 0 0 chr6 9714662 9714705 -179564849 + (TG)n Simple_repeat Simple_repeat 1 43 0 1469 171 54 6 chr6 9714882 9715198 -179564356 + L1MB3 LINE L1 5851 6181 -2 188 247 178 14 chr6 9715517 9715590 -179563964 - MIR SINE MIR -77 185 101 351 0 0 0 chr6 9716036 9716075 -179563479 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 302 12 0 chr6 9717244 9717330 -179562224 + MLT1F1 LTR MaLR 45 131 -436 2677 181 28 19 chr6 9717330 9717898 -179561656 + L1MD3 LINE L1 7409 7981 -14 319 310 98 35 chr6 9718498 9718672 -179560882 - MIR3 SINE MIR -6 202 18 1528 204 24 30 chr6 9719048 9719387 -179560167 + MLT1A1 LTR MaLR 1 337 -28 674 120 0 0 chr6 9719387 9719487 -179560067 - LTR12 LTR ERV1 0 714 615 276 228 33 22 chr6 9719489 9719581 -179559973 - LTR30 LTR ERV1 -79 643 551 696 153 29 62 chr6 9719581 9719814 -179559740 - LTR12 LTR ERV1 -427 287 1 716 268 17 6 chr6 9719875 9720054 -179559500 - MIR SINE MIR -17 245 65 195 42 0 0 chr6 9720056 9720080 -179559474 + (T)n Simple_repeat Simple_repeat 1 24 0 379 363 58 5 chr6 9720210 9720462 -179559092 + MIR SINE MIR 2 262 0 512 124 45 11 chr6 9723655 9723744 -179555810 + LTR23 LTR ERV1 304 395 -42 2174 87 14 3 chr6 9723970 9724259 -179555295 - AluY SINE Alu -19 292 1 229 282 0 0 chr6 9724723 9724808 -179554746 - L1MC4 LINE L1 -1344 6698 6614 * 262 284 0 0 chr6 9724734 9724829 -179554725 + L1MC4 LINE L1 6614 6708 -1334 2299 89 26 0 chr6 9725059 9725363 -179554191 - AluSq SINE Alu -1 312 1 570 234 90 45 chr6 9725529 9725730 -179553824 - MIR SINE MIR -34 228 19 343 301 34 27 chr6 9728697 9728843 -179550711 + MIR3 SINE MIR 60 206 -2 264 267 27 13 chr6 9731840 9731915 -179547639 - L2 LINE L2 0 3313 3238 1096 199 50 32 chr6 9732359 9732641 -179546913 + Charlie5 DNA MER1_type 7 293 -2319 5960 178 125 39 chr6 9732645 9734250 -179545304 + Charlie5 DNA MER1_type 594 2336 -276 1338 150 133 3 chr6 9734255 9734403 -179545151 + L1MA9 LINE L1 5987 6114 -198 302 67 22 0 chr6 9734403 9734448 -179545106 + (CA)n Simple_repeat Simple_repeat 1 46 0 1338 150 133 3 chr6 9734448 9734585 -179544969 + L1MA9 LINE L1 6114 6309 -3 903 165 111 15 chr6 9734590 9734851 -179544703 + Charlie5 DNA MER1_type 2328 2613 0 195 42 0 0 chr6 9734989 9735013 -179544541 + (A)n Simple_repeat Simple_repeat 1 24 0 293 321 79 60 chr6 9736537 9737070 -179542484 - L2 LINE L2 -83 3189 2647 1202 204 88 23 chr6 9737136 9737444 -179542110 + MER63B DNA MER1_type 8 335 -101 948 198 0 0 chr6 9737444 9737611 -179541943 - AluJb SINE Alu -13 299 133 293 318 61 99 chr6 9737810 9738222 -179541332 - L2 LINE L2 -5 3267 2872 1786 148 4 0 chr6 9738252 9738516 -179541038 + AluSx SINE Alu 38 302 -10 2058 154 65 8 chr6 9738519 9738901 -179540653 + L1P LINE L1 558 961 -5185 1184 99 0 0 chr6 9739005 9739180 -179540374 - AluSq SINE Alu 0 306 132 230 302 43 43 chr6 9739182 9739321 -179540233 - L2 LINE L2 -1063 2251 2113 195 291 18 0 chr6 9739554 9739609 -179539945 - L2 LINE L2 -23 3290 3235 385 258 102 60 chr6 9740400 9740567 -179538987 - MIR SINE MIR -34 228 55 2526 59 0 0 chr6 9740626 9740931 -179538623 + AluY SINE Alu 1 305 -6 189 74 0 0 chr6 9742091 9742118 -179537436 + (TGG)n Simple_repeat Simple_repeat 3 29 0 2328 70 27 10 chr6 9742727 9743028 -179536526 - AluY SINE Alu -5 306 1 443 314 47 47 chr6 9743306 9743478 -179536076 + MIR3 SINE MIR 16 187 -21 381 277 115 17 chr6 9744133 9744368 -179535186 - MIR SINE MIR -4 258 1 3600 52 0 0 chr6 9744556 9745002 -179534552 + L1PA7 LINE L1 5706 6151 -3 277 159 14 14 chr6 9745607 9745631 -179533923 + (TG)n Simple_repeat Simple_repeat 2 25 -45 1285 190 85 45 chr6 9745631 9745962 -179533592 - MER2 DNA MER2_type 0 344 1 277 159 14 14 chr6 9745962 9746006 -179533548 + (TG)n Simple_repeat Simple_repeat 24 70 0 305 268 16 24 chr6 9746083 9746206 -179533348 + (TA)n Simple_repeat Simple_repeat 1 122 0 21 36 0 0 chr6 9747433 9747461 -179532093 + AT_rich Low_complexity Low_complexity 1 28 0 508 301 64 0 chr6 9747533 9747689 -179531865 - MLT1I LTR MaLR 0 409 244 270 233 0 0 chr6 9747724 9747784 -179531770 - MER115 DNA AcHobo -632 61 2 539 310 30 22 chr6 9748398 9748617 -179530937 + MIR SINE MIR 2 198 -64 14074 124 46 14 chr6 9748617 9748898 -179530656 + Tigger1 DNA MER2_type 2 273 -2145 2205 112 0 0 chr6 9748898 9749192 -179530362 - AluSc SINE Alu 0 309 16 14074 124 46 14 chr6 9749192 9751253 -179528301 + Tigger1 DNA MER2_type 273 2417 -1 539 310 30 22 chr6 9751253 9751316 -179528238 + MIR SINE MIR 198 259 -3 345 335 99 0 chr6 9751341 9751502 -179528052 + L3 LINE CR1 1266 1442 -135 1046 232 70 29 chr6 9751941 9752256 -179527298 + MER2 DNA MER2_type 15 342 -3 24 53 0 0 chr6 9752289 9752327 -179527227 + AT_rich Low_complexity Low_complexity 1 38 0 1362 184 62 0 chr6 9753214 9753534 -179526020 - L1MA9 LINE L1 -10 6302 5963 188 254 34 17 chr6 9753562 9753621 -179525933 - MIR SINE MIR -19 243 184 431 341 30 12 chr6 9753660 9753827 -179525727 - MIR SINE MIR -76 186 17 1056 140 0 48 chr6 9753971 9754157 -179525397 - AluSg/x SINE Alu -5 305 129 810 204 43 69 chr6 9755114 9755345 -179524209 - MIR SINE MIR -36 226 2 26 0 0 0 chr6 9755628 9755654 -179523900 + AT_rich Low_complexity Low_complexity 1 26 0 450 143 13 0 chr6 9755932 9756009 -179523545 + MER116 DNA Mariner 3 80 0 1289 147 14 0 chr6 9756216 9756434 -179523120 - L1PA15 LINE L1 -7 6158 5938 23 54 0 0 chr6 9757410 9757447 -179522107 + AT_rich Low_complexity Low_complexity 1 37 0 716 148 16 0 chr6 9757600 9757728 -179521826 - L1P4 LINE L1 -1380 4766 4637 * 3566 128 8 3 chr6 9757724 9758673 -179520881 + L1P4 LINE L1 4795 5746 -415 263 246 108 0 chr6 9758684 9758749 -179520805 - MIR SINE MIR -72 190 119 1030 58 0 0 chr6 9758791 9758912 -179520642 - AluY SINE Alu -17 294 174 32 43 0 0 chr6 9758975 9759021 -179520533 + AT_rich Low_complexity Low_complexity 1 46 0 807 136 7 57 chr6 9759021 9759161 -179520393 - FLAM_C SINE Alu 0 133 1 954 199 39 0 chr6 9759359 9759540 -179520014 - MER5A DNA MER1_type -1 188 1 304 150 44 35 chr6 9760364 9760477 -179519077 + (TA)n Simple_repeat Simple_repeat 2 115 0 21 0 0 0 chr6 9763916 9763937 -179515617 + AT_rich Low_complexity Low_complexity 1 21 0 1410 187 33 0 chr6 9764346 9764651 -179514903 - MER33 DNA MER1_type 0 324 10 1066 157 51 37 chr6 9764777 9764993 -179514561 + MER20 DNA MER1_type 1 219 0 2346 137 11 3 chr6 9765124 9765483 -179514071 + THE1B LTR MaLR 3 364 0 346 202 202 0 chr6 9766114 9766198 -179513356 - MLT1E LTR MaLR 0 593 493 * 1773 191 26 37 chr6 9766190 9766262 -179513292 - MLT2B3 LTR ERVL -207 347 276 2407 95 0 0 chr6 9766262 9766567 -179512987 - AluSg SINE Alu -5 305 1 1773 191 26 37 chr6 9766567 9766845 -179512709 - MLT2B3 LTR ERVL -278 276 1 360 0 0 0 chr6 9767471 9767511 -179512043 + (TG)n Simple_repeat Simple_repeat 2 41 0 204 263 11 32 chr6 9767668 9767763 -179511791 + T-rich Low_complexity Low_complexity 3 95 0 231 183 50 33 chr6 9768279 9768339 -179511215 + L1MC4a LINE L1 6078 6138 -1670 226 143 24 0 chr6 9768657 9768699 -179510855 + CT-rich Low_complexity Low_complexity 2 44 0 456 19 0 0 chr6 9768707 9768760 -179510794 + (TG)n Simple_repeat Simple_repeat 2 54 0 2963 246 70 11 chr6 9768981 9770223 -179509331 - L1ME1 LINE L1 0 6166 4845 216 0 0 0 chr6 9770234 9770258 -179509296 + (T)n Simple_repeat Simple_repeat 1 24 0 601 183 117 103 chr6 9770689 9770902 -179508652 + MER20 DNA MER1_type 4 219 0 39 0 0 0 chr6 9771288 9771327 -179508227 + AT_rich Low_complexity Low_complexity 1 39 0 465 162 0 0 chr6 9771377 9771451 -179508103 - AluS SINE Alu -235 74 1 537 211 0 0 chr6 9771565 9771674 -179507880 - L1PB4 LINE L1 -8 6148 6040 228 240 0 0 chr6 9773164 9773264 -179506290 + (TG)n Simple_repeat Simple_repeat 1 100 0 202 273 15 0 chr6 9773282 9773348 -179506206 + (TG)n Simple_repeat Simple_repeat 2 68 0 183 283 0 0 chr6 9773506 9773552 -179506002 - L2 LINE L2 -3 3269 3224 405 0 0 0 chr6 9774642 9774687 -179504867 + (CA)n Simple_repeat Simple_repeat 2 46 0 1955 105 0 0 chr6 9774720 9774977 -179504577 + AluSx SINE Alu 55 311 -1 480 287 73 10 chr6 9775565 9775854 -179503700 + L1MEd LINE L1 1330 1636 -4894 424 364 46 8 chr6 9776011 9776250 -179503304 + L1MEd LINE L1 1895 2142 -4579 315 297 67 5 chr6 9776521 9776716 -179502838 + L1MEd LINE L1 2444 2650 -3890 * 431 282 31 53 chr6 9776702 9776929 -179502625 + L1ME3A LINE L1 5646 5867 -303 820 209 74 0 chr6 9777079 9777242 -179502312 + MER45A DNA AcHobo 4 178 0 214 132 0 26 chr6 9778810 9778848 -179500706 - MIR SINE MIR -6 256 220 289 305 92 29 chr6 9779460 9779634 -179499920 + MIR SINE MIR 77 261 -1 210 143 0 0 chr6 9779870 9779905 -179499649 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr6 9780829 9780852 -179498702 + AT_rich Low_complexity Low_complexity 1 23 0 361 303 59 16 chr6 9781103 9781247 -179498307 + MIR SINE MIR 15 166 -42 194 57 57 0 chr6 9782781 9782816 -179496738 + T-rich Low_complexity Low_complexity 4 40 0 386 266 143 26 chr6 9784279 9784433 -179495121 - MER5B DNA MER1_type -6 172 1 816 204 68 0 chr6 9784500 9784676 -179494878 - MER5A DNA MER1_type 0 189 2 254 286 0 13 chr6 9784727 9784804 -179494750 + MER21B LTR ERV1 12 87 -776 1172 186 4 59 chr6 9784864 9785100 -179494454 + MER21B LTR ERV1 102 324 -539 * 1374 256 47 70 chr6 9785097 9785629 -179493925 + MER21B LTR ERV1 287 806 -57 408 243 223 14 chr6 9785794 9785942 -179493612 + MER5A DNA MER1_type 4 182 -7 590 243 171 0 chr6 9785949 9786101 -179493453 + MER5B DNA MER1_type 1 178 0 344 196 98 23 chr6 9786716 9786849 -179492705 + L1MC4 LINE L1 7898 8040 -2 1685 187 3 20 chr6 9787488 9787793 -179491761 + AluJb SINE Alu 3 302 -10 733 128 18 0 chr6 9787904 9788013 -179491541 + AluSg SINE Alu 30 140 -170 42480 32 25 2 chr6 9788013 9794018 -179485536 + L1PA2 LINE L1 6 6148 -7 1335 101 0 0 chr6 9794018 9794196 -179485358 + AluSg SINE Alu 119 296 -14 249 246 0 0 chr6 9794636 9794697 -179484857 + CT-rich Low_complexity Low_complexity 2 62 0 805 271 248 34 chr6 9794782 9795010 -179484544 - L2 LINE L2 -1 3312 3134 201 39 0 0 chr6 9795010 9795036 -179484518 + (TG)n Simple_repeat Simple_repeat 2 27 0 805 271 248 34 chr6 9795036 9795499 -179484055 - L2 LINE L2 -179 3134 2450 204 329 35 35 chr6 9795501 9795644 -179483910 - L3b LINE CR1 -339 1244 1102 1209 292 64 7 chr6 9795904 9796359 -179483195 + L1ME LINE L1 5266 5746 -424 38 0 0 0 chr6 9796361 9796399 -179483155 + AT_rich Low_complexity Low_complexity 1 38 0 6611 48 7 0 chr6 9796399 9797220 -179482334 - L1PA5 LINE L1 -7 6147 5321 2055 105 3 33 chr6 9798376 9798681 -179480873 - AluSg SINE Alu -14 296 1 666 290 59 11 chr6 9798989 9799175 -179480379 - MIR3 SINE MIR -1 207 13 367 189 0 0 chr6 9799187 9799261 -179480293 + MER5A DNA MER1_type 1 74 -115 2025 141 92 8 chr6 9800088 9800479 -179479075 + MSTA LTR MaLR 1 424 -4 603 258 59 11 chr6 9800491 9800677 -179478877 + MIR SINE MIR 17 211 -51 329 312 142 35 chr6 9800829 9800970 -179478584 + L2 LINE L2 3116 3271 -1 490 280 110 6 chr6 9802250 9802432 -179477122 + Charlie2 DNA MER1_type 69 269 -2593 1319 213 94 70 chr6 9802552 9802642 -179476912 + Charlie2 DNA MER1_type 2136 2222 -640 357 240 85 8 chr6 9802642 9802771 -179476783 + MER91C DNA MER1_type 1 139 -1 1319 213 94 70 chr6 9802771 9803383 -179476171 + Charlie2 DNA MER1_type 2222 2855 -7 411 261 46 76 chr6 9803705 9803981 -179475573 + HAL1 LINE L1 843 1103 -1404 2040 130 13 3 chr6 9803981 9804282 -179475272 + AluSx SINE Alu 1 304 -8 411 261 46 76 chr6 9804282 9804441 -179475113 + HAL1 LINE L1 1103 1265 -1242 2551 151 15 6 chr6 9804641 9805110 -179474444 + L1PA16 LINE L1 5674 6146 -20 6308 160 21 5 chr6 9805118 9806473 -179473081 + L1P4 LINE L1 4106 5474 -694 1656 57 31 0 chr6 9806505 9806733 -179472821 + L1PA13 LINE L1 5927 6161 -2 2007 90 68 0 chr6 9806838 9806957 -179472597 + AluSc SINE Alu 1 110 -199 216 0 0 0 chr6 9806957 9806981 -179472573 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2007 90 68 0 chr6 9806981 9807140 -179472414 + AluSc SINE Alu 110 298 -11 1711 168 45 17 chr6 9807839 9808197 -179471357 - MLT1C LTR MaLR -5 462 95 329 250 69 17 chr6 9808231 9808379 -179471175 + MLT1E3 LTR MaLR 80 217 -409 315 224 47 0 chr6 9808385 9808470 -179471084 - MLT1C LTR MaLR -376 91 3 29 90 0 0 chr6 9808500 9808578 -179470976 + AT_rich Low_complexity Low_complexity 1 78 0 1177 237 116 39 chr6 9808865 9809358 -179470196 - L1ME1 LINE L1 -12 6965 6435 947 204 13 4 chr6 9809363 9809588 -179469966 - L1ME1 LINE L1 -743 6214 5988 1260 264 74 42 chr6 9809690 9810191 -179469363 + MLT1E3 LTR MaLR 84 600 -24 345 212 112 39 chr6 9810191 9810370 -179469184 - L1ME1 LINE L1 -986 5971 5780 28 79 0 0 chr6 9810372 9810435 -179469119 + AT_rich Low_complexity Low_complexity 1 63 0 897 243 13 75 chr6 9810442 9810817 -179468737 - L1ME1 LINE L1 -5296 1563 1212 420 263 66 116 chr6 9810871 9811130 -179468424 - L1ME1 LINE L1 -5656 1199 954 312 313 28 85 chr6 9811387 9811598 -179467956 - L1ME1 LINE L1 -6569 290 92 2193 122 0 6 chr6 9811689 9812000 -179467554 - AluSx SINE Alu -3 309 1 1781 289 122 33 chr6 9812010 9813096 -179466458 - L1MCc LINE L1 -4770 2171 1183 2223 110 0 3 chr6 9813096 9813387 -179466167 - AluSc SINE Alu -19 290 1 1781 289 122 33 chr6 9813387 9813864 -179465690 - L1MCc LINE L1 -5758 1183 750 956 209 80 0 chr6 9813864 9814065 -179465489 - MER20 DNA MER1_type 0 219 3 1781 289 122 33 chr6 9814065 9814479 -179465075 - L1MCc LINE L1 -6191 750 11 2482 69 0 0 chr6 9814579 9814882 -179464672 - AluY SINE Alu -8 303 1 328 235 0 0 chr6 9815121 9815189 -179464365 - Charlie8 DNA MER1_type -1000 1417 1350 287 302 86 26 chr6 9815392 9815508 -179464046 - L2 LINE L2 -1 3312 3190 621 276 66 29 chr6 9815530 9815773 -179463781 - Charlie8 DNA MER1_type -2143 274 23 1881 121 44 24 chr6 9816330 9816628 -179462926 - AluSx SINE Alu -8 304 1 3910 152 91 26 chr6 9816743 9817575 -179461979 - pTR5 LTR ERV1 0 2438 1661 192 77 0 0 chr6 9817575 9817601 -179461953 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 3910 152 91 26 chr6 9817601 9818071 -179461483 - pTR5 LTR ERV1 -777 1661 743 1885 151 10 3 chr6 9819665 9819957 -179459597 - AluJo SINE Alu -8 304 11 23 0 0 0 chr6 9820197 9820220 -179459334 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr6 9822211 9822243 -179457311 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 28 0 0 0 chr6 9822313 9822341 -179457213 + AT_rich Low_complexity Low_complexity 1 28 0 638 161 54 0 chr6 9823815 9823945 -179455609 + L1MB1 LINE L1 6032 6168 0 21 36 0 0 chr6 9824128 9824156 -179455398 + AT_rich Low_complexity Low_complexity 1 28 0 2402 73 0 28 chr6 9824889 9825206 -179454348 - AluY SINE Alu -3 308 1 2263 45 49 14 chr6 9825210 9825497 -179454057 - AluY SINE Alu -14 297 1 23 33 0 0 chr6 9825683 9825713 -179453841 + AT_rich Low_complexity Low_complexity 1 30 0 219 146 0 0 chr6 9828372 9828413 -179451141 + (TG)n Simple_repeat Simple_repeat 2 42 0 200 191 64 138 chr6 9828459 9828553 -179451001 - MIR SINE MIR 0 262 176 12126 158 11 14 chr6 9828660 9831700 -179447854 - L1PA13 LINE L1 -19 6144 3115 509 264 117 78 chr6 9831700 9831977 -179447577 - MLT1J LTR MaLR -161 350 55 2161 99 3 0 chr6 9831977 9832282 -179447272 - AluSq SINE Alu 0 306 1 509 264 117 78 chr6 9832282 9832336 -179447218 - MLT1J LTR MaLR -456 55 5 287 340 80 13 chr6 9832339 9832489 -179447065 - MIR SINE MIR -98 164 5 1614 168 0 22 chr6 9833278 9833552 -179446002 + AluJo SINE Alu 37 304 -8 622 214 66 6 chr6 9833627 9833809 -179445745 - MER33 DNA MER1_type -98 226 34 1604 163 52 14 chr6 9834806 9835095 -179444459 - AluSq SINE Alu -13 300 1 5489 94 1 30 chr6 9835408 9836265 -179443289 - L1PA14 LINE L1 -4 6157 5326 358 122 0 122 chr6 9836599 9836673 -179442881 - FLAM SINE Alu -4 129 65 2283 108 0 0 chr6 9836792 9837097 -179442457 - AluSq SINE Alu -8 305 1 254 238 0 16 chr6 9837404 9837467 -179442087 - LTR67 LTR ERVL 0 557 496 282 348 0 11 chr6 9838097 9838189 -179441365 - L2 LINE L2 -2 3270 3180 14610 133 18 6 chr6 9838247 9840637 -179438917 - Tigger1 DNA MER2_type 0 2418 1 1946 148 0 20 chr6 9840658 9840955 -179438599 + AluSx SINE Alu 1 291 -21 324 0 0 0 chr6 9841098 9841134 -179438420 + (TG)n Simple_repeat Simple_repeat 2 37 0 218 71 0 48 chr6 9842842 9842884 -179436670 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1755 131 22 11 chr6 9843745 9844020 -179435534 - AluSx SINE Alu 0 312 35 21 36 0 0 chr6 9844252 9844280 -179435274 + AT_rich Low_complexity Low_complexity 1 28 0 1781 161 6 43 chr6 9845245 9845569 -179433985 + AluJo SINE Alu 1 312 0 22 0 0 0 chr6 9845700 9845722 -179433832 + AT_rich Low_complexity Low_complexity 1 22 0 2542 115 28 0 chr6 9846245 9846644 -179432910 + L1PA8 LINE L1 5760 6169 -3 602 215 169 31 chr6 9848402 9848597 -179430957 + L2 LINE L2 3092 3313 0 256 352 67 88 chr6 9848774 9849115 -179430439 + L2 LINE L2 2919 3252 -20 436 278 32 8 chr6 9849274 9849400 -179430154 - L2 LINE L2 -5 3308 3180 254 214 0 14 chr6 9850914 9850984 -179428570 + CT-rich Low_complexity Low_complexity 2 70 0 1663 170 0 52 chr6 9853048 9853354 -179426200 - AluJb SINE Alu -22 290 1 329 308 47 37 chr6 9853681 9853788 -179425766 + L2 LINE L2 3192 3299 -14 241 97 69 0 chr6 9854145 9854217 -179425337 + (TA)n Simple_repeat Simple_repeat 2 78 0 31 68 0 0 chr6 9854226 9854285 -179425269 + AT_rich Low_complexity Low_complexity 1 59 0 2198 125 7 0 chr6 9854297 9854592 -179424962 + AluSx SINE Alu 1 297 -15 1503 167 28 4 chr6 9855187 9855439 -179424115 - AluJo SINE Alu -54 258 1 297 75 0 0 chr6 9856033 9856073 -179423481 + (TG)n Simple_repeat Simple_repeat 2 41 0 444 254 111 0 chr6 9857430 9857556 -179421998 + MIR SINE MIR 63 202 -60 377 231 43 17 chr6 9857627 9857744 -179421810 - MIR SINE MIR -10 252 133 1849 179 38 57 chr6 9857904 9858450 -179421104 - MLT2C2 LTR ERVL 0 464 1 248 293 65 65 chr6 9858684 9858807 -179420747 - MIR SINE MIR -66 142 20 441 0 0 0 chr6 9860422 9860471 -179419083 + (TG)n Simple_repeat Simple_repeat 2 50 0 1241 207 113 51 chr6 9860807 9861242 -179418312 + MLT1C LTR MaLR 6 467 0 2006 138 7 0 chr6 9861397 9861686 -179417868 + AluSc SINE Alu 1 291 -18 2195 95 0 3 chr6 9861689 9862006 -179417548 + AluY SINE Alu 1 316 0 2045 116 0 0 chr6 9862153 9862478 -179417076 - AluSg SINE Alu 0 330 6 522 236 64 17 chr6 9862919 9863112 -179416442 + MIR SINE MIR 2 202 -60 207 272 0 0 chr6 9863994 9864119 -179415435 + (TG)n Simple_repeat Simple_repeat 2 126 0 1762 156 46 38 chr6 9864593 9864965 -179414589 + THE1C LTR MaLR 1 375 0 25 75 0 0 chr6 9865303 9865356 -179414198 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr6 9866356 9866384 -179413170 + AT_rich Low_complexity Low_complexity 1 28 0 2166 104 13 26 chr6 9866407 9866715 -179412839 - AluSx SINE Alu -4 308 5 3300 150 25 30 chr6 9867590 9868197 -179411357 - MER6A DNA MER2_type -1 604 1 306 282 118 45 chr6 9868905 9869015 -179410539 + L2 LINE L2 3155 3272 0 690 256 115 0 chr6 9869222 9869413 -179410141 - MIR SINE MIR -1 261 49 2579 162 33 44 chr6 9869626 9869667 -179409887 - MLT2B2 LTR ERVL -2 513 473 360 0 0 0 chr6 9869667 9869707 -179409847 + (CA)n Simple_repeat Simple_repeat 1 40 0 2579 162 33 44 chr6 9869707 9870184 -179409370 - MLT2B2 LTR ERVL -42 473 1 21 0 0 0 chr6 9870302 9870323 -179409231 + AT_rich Low_complexity Low_complexity 1 21 0 3597 179 33 9 chr6 9870323 9871056 -179408498 - L1MA7 LINE L1 -2 6493 5744 2794 172 7 18 chr6 9871056 9871625 -179407929 - L1MA7 LINE L1 -887 5463 4901 * 40102 57 6 1 chr6 9871614 9877739 -179401815 - L1PA5 LINE L1 -1 6153 11 328 151 174 0 chr6 9877757 9877843 -179401711 - L1MA7 LINE L1 -1439 4911 4811 1103 155 0 0 chr6 9877844 9878005 -179401549 - AluJb SINE Alu -14 298 138 8579 196 21 8 chr6 9878005 9880035 -179399519 - L1MA7 LINE L1 -1531 4819 2764 1271 220 80 32 chr6 9880048 9880616 -179398938 - L1MA7 LINE L1 -4516 1765 1250 2761 174 60 44 chr6 9880617 9881300 -179398254 - LTR8A LTR ERV1 0 727 34 1015 333 33 3 chr6 9881312 9881703 -179397851 - L1MA7 LINE L1 -5026 1255 853 717 284 87 79 chr6 9882071 9882399 -179397155 - L1MA7 LINE L1 -4723 627 267 5324 73 1 3 chr6 9882399 9883094 -179396460 + L1PA6 LINE L1 5450 6143 -11 717 284 87 79 chr6 9883094 9883363 -179396191 - L1MA7 LINE L1 -5083 267 2 1161 181 178 22 chr6 9883775 9884100 -179395454 - MLT1A2 LTR MaLR 0 467 1 201 94 0 0 chr6 9884766 9884798 -179394756 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 326 74 82 chr6 9885285 9885420 -179394134 - MIR SINE MIR -70 192 59 27 49 0 0 chr6 9885523 9885564 -179393990 + AT_rich Low_complexity Low_complexity 1 41 0 240 86 0 0 chr6 9885765 9885800 -179393754 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 29 28 0 0 chr6 9886070 9886106 -179393448 + AT_rich Low_complexity Low_complexity 1 36 0 387 60 0 0 chr6 9886216 9886266 -179393288 + (CA)n Simple_repeat Simple_repeat 1 50 0 232 331 8 41 chr6 9886521 9886642 -179392912 + MER5A DNA MER1_type 38 154 -35 11967 46 4 0 chr6 9886645 9888885 -179390669 - L1PA5 LINE L1 -1 6153 3894 413 239 0 0 chr6 9888917 9889005 -179390549 - MIR SINE MIR 0 262 175 4425 170 96 27 chr6 9889500 9890983 -179388571 + L1MC1 LINE L1 4750 6333 0 1166 102 0 0 chr6 9890990 9891166 -179388388 - L1PA8 LINE L1 -1115 5031 4856 6282 88 11 24 chr6 9891166 9892166 -179387388 + L1PA8 LINE L1 5064 6075 -97 2025 99 4 0 chr6 9892166 9892429 -179387125 + AluSc SINE Alu 17 280 -29 229 26 53 0 chr6 9892429 9892467 -179387087 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 6282 88 11 24 chr6 9892467 9892587 -179386967 + L1PA8 LINE L1 6073 6172 0 430 299 64 13 chr6 9892606 9892840 -179386714 + L1MC5 LINE L1 7659 7904 -57 244 298 305 8 chr6 9892944 9893075 -179386479 - MER5B DNA MER1_type -8 170 1 297 279 52 29 chr6 9893315 9893451 -179386103 - MIR SINE MIR -13 249 111 2098 141 25 19 chr6 9893539 9893900 -179385654 - THE1B LTR MaLR 0 364 2 394 309 55 24 chr6 9894693 9894858 -179384696 + MIR3 SINE MIR 33 202 -6 2158 133 10 0 chr6 9895498 9895806 -179383748 - AluSx SINE Alu -1 311 1 304 195 143 0 chr6 9895844 9895921 -179383633 - L1MCc LINE L1 -2933 4008 3921 734 184 32 21 chr6 9895921 9896111 -179383443 - LTR52 LTR ERVL 0 421 230 2030 136 169 5 chr6 9896113 9896481 -179383073 + MSTA LTR MaLR 1 428 0 6200 177 135 10 chr6 9896483 9897875 -179381679 + MSTA-int LTR MaLR 3 1568 -12 2245 134 116 10 chr6 9897886 9898273 -179381281 + MSTA LTR MaLR 1 428 0 834 244 16 29 chr6 9898273 9898505 -179381049 - LTR52 LTR ERVL -190 231 1 858 259 58 24 chr6 9898509 9898922 -179380632 - L1MCc LINE L1 -3026 3915 3489 773 301 71 38 chr6 9898945 9899687 -179379867 - L1MCc LINE L1 -4898 1525 360 291 157 0 0 chr6 9899691 9899742 -179379812 + CT-rich Low_complexity Low_complexity 2 52 0 2200 106 33 0 chr6 9899752 9900054 -179379500 - AluSq SINE Alu -1 312 1 753 140 6 19 chr6 9900064 9900221 -179379333 + CT-rich Low_complexity Low_complexity 1 155 0 438 341 62 6 chr6 9900238 9900563 -179378991 - L1MCc LINE L1 -6062 361 19 308 298 175 72 chr6 9900565 9901614 -179377940 + L2 LINE L2 1613 2770 -544 209 266 125 0 chr6 9901591 9901655 -179377899 + L2 LINE L2 3240 3311 -2 * 2035 153 0 7 chr6 9901822 9902122 -179377432 - AluSx SINE Alu -14 298 1 268 293 106 16 chr6 9902258 9902381 -179377173 + L2 LINE L2 3160 3293 -20 1672 136 21 0 chr6 9903036 9903316 -179376238 - Tigger1 DNA MER2_type -182 2236 1951 2244 90 7 3 chr6 9903318 9903617 -179375937 + AluSq SINE Alu 1 300 -13 1085 103 12 0 chr6 9903629 9903794 -179375760 + Tigger1 DNA MER2_type 1758 1924 -494 258 363 71 0 chr6 9904178 9904291 -179375263 + MIR SINE MIR 44 164 -98 2128 221 23 8 chr6 9905068 9905585 -179373969 - L1PBb LINE L1 -4040 2809 2285 817 123 0 0 chr6 9905632 9905754 -179373800 - L1MA3 LINE L1 0 6305 6184 5212 252 45 13 chr6 9905764 9907802 -179371752 - L1PBb LINE L1 -3303 3546 1336 421 217 0 0 chr6 9907797 9907880 -179371674 - L1PBb LINE L1 -5295 1554 1472 * 341 331 29 20 chr6 9907880 9908125 -179371429 - L1PBb LINE L1 -5286 1563 1317 324 368 144 53 chr6 9908577 9908876 -179370678 - L1PBb LINE L1 -5894 956 631 849 304 69 37 chr6 9908913 9909374 -179370180 - L1PBb LINE L1 -6355 495 20 539 286 8 0 chr6 9910534 9910667 -179368887 + MIR SINE MIR 124 257 -5 390 339 48 12 chr6 9911763 9911928 -179367626 + MIR SINE MIR 36 206 -56 344 288 61 49 chr6 9912026 9912189 -179367365 + L2 LINE L2 2251 2415 -899 1207 274 57 9 chr6 9912240 9912590 -179366964 + MLT1F1 LTR MaLR 201 567 0 796 295 75 17 chr6 9912590 9913045 -179366509 + MLT1F1-int LTR MaLR 1 601 -770 382 341 0 0 chr6 9913340 9913469 -179366085 + MLT1F1-int LTR MaLR 756 884 -487 446 284 28 7 chr6 9913683 9913824 -179365730 + MLT1B LTR MaLR 28 171 -371 296 244 56 11 chr6 9913966 9914056 -179365498 - MER94 DNA DNA -31 103 10 424 333 97 13 chr6 9914902 9915130 -179364424 + MIR SINE MIR 16 262 0 883 211 38 24 chr6 9915136 9915345 -179364209 + MER20 DNA MER1_type 1 212 -7 397 275 94 45 chr6 9915565 9915969 -179363585 + L1ME4a LINE L1 5622 6045 -76 24 32 0 0 chr6 9915986 9916017 -179363537 + AT_rich Low_complexity Low_complexity 1 31 0 558 0 0 0 chr6 9917683 9917745 -179361809 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 234 0 0 0 chr6 9919968 9919994 -179359560 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1508 215 33 44 chr6 9921240 9921691 -179357863 - MER39 LTR ERV1 -4 703 258 189 356 85 8 chr6 9921899 9922017 -179357537 + MIR SINE MIR 117 243 -19 3646 152 20 9 chr6 9922138 9922797 -179356757 - L1PA15 LINE L1 -5 6160 5495 4287 73 10 7 chr6 9923516 9924092 -179355462 + L1PA11 LINE L1 5591 6168 -6 297 212 61 71 chr6 9925305 9925404 -179354150 + MIR SINE MIR 99 196 -66 678 151 0 0 chr6 9925973 9926092 -179353462 - L1MA4 LINE L1 -5 6295 6177 383 266 73 51 chr6 9926333 9926707 -179352847 + L1MEd LINE L1 920 1398 -1092 310 267 30 74 chr6 9926707 9926842 -179352712 + HAL1 LINE L1 1512 1640 -867 1502 211 72 55 chr6 9926855 9927314 -179352240 - MLT1C LTR MaLR 0 467 1 254 360 82 7 chr6 9928978 9929125 -179350429 + MIR SINE MIR 8 165 -97 1378 191 4 0 chr6 9929465 9929721 -179349833 + MLT1B LTR MaLR 134 390 0 639 267 53 36 chr6 9931089 9931314 -179348240 + MIR SINE MIR 8 236 -26 284 255 124 28 chr6 9931599 9931744 -179347810 - MIR SINE MIR -12 250 92 340 274 132 0 chr6 9932071 9932177 -179347377 + L2 LINE L2 3189 3308 -5 452 332 108 66 chr6 9932824 9933411 -179346143 + L2 LINE L2 2709 3312 -1 266 297 65 43 chr6 9933458 9933596 -179345958 + MIR SINE MIR 72 212 -50 406 288 27 49 chr6 9934357 9934541 -179345013 + MER5A DNA MER1_type 3 182 -7 363 273 150 37 chr6 9935032 9935219 -179344335 + MIR SINE MIR 26 233 -29 207 258 65 32 chr6 9935685 9935747 -179343807 - MIR3 SINE MIR -10 198 135 318 26 0 0 chr6 9935941 9935980 -179343574 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 342 61 0 0 chr6 9935979 9936028 -179343526 + (TG)n Simple_repeat Simple_repeat 2 50 0 1014 293 51 15 chr6 9936473 9937155 -179342399 - L1MCc LINE L1 -4939 2183 1263 230 293 0 13 chr6 9937181 9937256 -179342298 - L1MCc LINE L1 -5220 1203 1130 751 125 8 0 chr6 9938184 9938304 -179341250 - L1PA14 LINE L1 0 6161 6041 1816 106 4 8 chr6 9941263 9941509 -179338045 + AluSx SINE Alu 55 299 -13 197 176 0 20 chr6 9941701 9941752 -179337802 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 485 276 8 16 chr6 9942006 9942133 -179337421 - MER5B DNA MER1_type -16 162 37 2358 87 0 10 chr6 9942321 9942621 -179336933 + AluSq SINE Alu 1 297 -16 42587 35 23 1 chr6 9943285 9949312 -179330242 - L1PA3 LINE L1 0 6155 1 24 0 0 0 chr6 9950015 9950039 -179329515 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 9950832 9950854 -179328700 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 9951168 9951207 -179328347 + AT_rich Low_complexity Low_complexity 1 39 0 606 302 74 46 chr6 9951431 9952103 -179327451 - L1ME3A LINE L1 -206 5964 5274 207 0 0 0 chr6 9952109 9952132 -179327422 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 9952255 9952276 -179327278 + AT_rich Low_complexity Low_complexity 1 21 0 344 291 54 49 chr6 9952479 9952682 -179326872 - L1ME3A LINE L1 -2831 3315 3112 306 276 104 27 chr6 9952727 9952948 -179326606 - L1ME3A LINE L1 -3619 2527 2290 1313 166 4 7 chr6 9953053 9953324 -179326230 + L1MA4 LINE L1 6026 6295 -5 21 36 0 0 chr6 9953451 9953479 -179326075 + AT_rich Low_complexity Low_complexity 1 28 0 261 267 10 30 chr6 9953876 9953977 -179325577 - HAL1 LINE L1 -856 1651 1553 279 325 86 75 chr6 9954069 9954465 -179325089 - L2 LINE L2 -610 2704 2301 2161 123 0 7 chr6 9954465 9954773 -179324781 + AluSx SINE Alu 1 306 -6 279 325 86 75 chr6 9954773 9954819 -179324735 - L2 LINE L2 -1013 2301 2257 2435 59 3 13 chr6 9954899 9955206 -179324348 - AluY SINE Alu -3 308 5 2344 90 3 0 chr6 9955965 9956265 -179323289 - AluSp SINE Alu -12 301 1 22 0 0 0 chr6 9956304 9956326 -179323228 + AT_rich Low_complexity Low_complexity 1 22 0 1656 150 12 0 chr6 9956458 9956711 -179322843 + AluJb SINE Alu 34 289 -23 1903 168 21 0 chr6 9958987 9959314 -179320240 + MER44D DNA MER2_type 1 604 -5 258 359 157 31 chr6 9959612 9960314 -179319240 - L2 LINE L2 -546 2768 1979 306 284 269 0 chr6 9960344 9960478 -179319076 - MER5A DNA MER1_type -9 180 11 200 259 36 107 chr6 9960610 9960722 -179318832 + L2 LINE L2 3210 3313 0 2588 214 67 62 chr6 9960807 9962118 -179317436 - L1ME1 LINE L1 -18 6148 4825 403 178 20 10 chr6 9963082 9963183 -179316371 + CT-rich Low_complexity Low_complexity 2 103 0 2304 83 3 0 chr6 9963284 9963572 -179315982 - AluSc SINE Alu -16 293 5 1023 119 11 6 chr6 9964664 9964841 -179314713 + (TTC)n Simple_repeat Simple_repeat 3 180 0 352 156 13 13 chr6 9964843 9964920 -179314634 + CT-rich Low_complexity Low_complexity 1 77 0 509 125 0 0 chr6 9966336 9966416 -179313138 + MADE1 DNA Mariner 1 80 0 7494 231 52 68 chr6 9966941 9969135 -179310419 - L1MDb LINE L1 -897 5509 3254 1002 66 0 0 chr6 9969135 9969256 -179310298 + AluSc SINE Alu 185 305 -4 7494 231 52 68 chr6 9969256 9969983 -179309571 - L1MDb LINE L1 -3152 3254 2517 1713 241 100 13 chr6 9969999 9970629 -179308925 - L1MDb LINE L1 -4044 2362 1678 1101 279 109 22 chr6 9970606 9970766 -179308788 - L1MDb LINE L1 -5619 790 645 * 1494 71 0 15 chr6 9970766 9970964 -179308590 + L1PA7 LINE L1 5960 6154 0 1101 279 109 22 chr6 9970964 9971406 -179308148 - L1MDb LINE L1 -5764 645 24 1433 135 145 3 chr6 9971521 9971803 -179307751 - L1MB3 LINE L1 -6 6177 5856 196 311 136 0 chr6 9972188 9972291 -179307263 + MIR SINE MIR 35 151 -111 299 173 16 81 chr6 9972362 9972547 -179307007 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 2023 69 0 4 chr6 9973135 9973380 -179306174 + AluY SINE Alu 1 244 -67 21 0 0 0 chr6 9973466 9973487 -179306067 + AT_rich Low_complexity Low_complexity 1 21 0 240 331 67 11 chr6 9976036 9976214 -179303340 + L1ME2 LINE L1 7 194 -6202 2290 268 72 54 chr6 9976826 9978699 -179300855 + L1ME2 LINE L1 656 2564 -3651 1618 245 71 9 chr6 9978720 9979075 -179300479 + L1ME2 LINE L1 5681 6082 -151 288 0 0 0 chr6 9979075 9979107 -179300447 + (TG)n Simple_repeat Simple_repeat 2 33 0 1618 245 71 9 chr6 9979107 9979259 -179300295 + L1ME2 LINE L1 6082 6223 -10 36 23 0 0 chr6 9979748 9979791 -179299763 + AT_rich Low_complexity Low_complexity 1 43 0 333 0 0 0 chr6 9979878 9979915 -179299639 + (TG)n Simple_repeat Simple_repeat 2 38 0 234 191 16 32 chr6 9980912 9980975 -179298579 + L1M3 LINE L1 5492 5553 -627 264 247 152 11 chr6 9981111 9981289 -179298265 + L1ME4a LINE L1 5742 5944 -177 316 322 125 13 chr6 9981596 9981712 -179297842 + MIR SINE MIR 48 186 -76 396 0 0 0 chr6 9981712 9981756 -179297798 + (TG)n Simple_repeat Simple_repeat 1 44 0 316 322 125 13 chr6 9981756 9981791 -179297763 + MIR SINE MIR 186 216 -46 29 84 0 0 chr6 9981880 9981951 -179297603 + AT_rich Low_complexity Low_complexity 1 71 0 47 101 0 13 chr6 9981986 9982213 -179297341 + AT_rich Low_complexity Low_complexity 1 224 0 2016 120 17 13 chr6 9982639 9982939 -179296615 + AluSx SINE Alu 1 301 -11 783 150 42 163 chr6 9983380 9983620 -179295934 + MER20 DNA MER1_type 9 219 0 561 302 16 81 chr6 9985152 9985410 -179294144 - MIR SINE MIR -12 250 10 2156 71 46 0 chr6 9986212 9986493 -179293061 + AluY SINE Alu 1 294 -17 262 169 79 0 chr6 9987786 9987875 -179291679 + (TA)n Simple_repeat Simple_repeat 2 97 0 1871 171 83 3 chr6 9989796 9990158 -179289396 - MSTB LTR MaLR 0 426 36 227 200 36 18 chr6 9990648 9990703 -179288851 + MLT1K LTR MaLR 533 588 0 21 57 0 0 chr6 9991190 9991225 -179288329 + AT_rich Low_complexity Low_complexity 1 35 0 4174 130 49 49 chr6 9991695 9992448 -179287106 + LTR1 LTR ERV1 32 784 -1 2350 124 11 21 chr6 9993165 9993544 -179286010 + THE1C LTR MaLR 1 375 0 979 229 9 5 chr6 9993892 9994115 -179285439 + MER58A DNA MER1_type 1 224 0 3073 169 29 2 chr6 9994190 9994775 -179284779 - L1MA8 LINE L1 0 6291 5691 353 227 30 21 chr6 9994849 9994961 -179284593 - MLT1G3 LTR MaLR -8 522 432 * 466 204 134 14 chr6 9994956 9995098 -179284456 - MLT1G1 LTR MaLR -436 159 1 369 329 72 46 chr6 9995180 9995417 -179284137 + MIR SINE MIR 20 262 0 560 276 128 64 chr6 9995511 9995916 -179283638 + L2 LINE L2 2883 3313 0 336 335 30 37 chr6 9997156 9997320 -179282234 + MLT1K LTR MaLR 186 348 -240 459 0 0 0 chr6 9997527 9997578 -179281976 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 460 342 6 6 chr6 9998010 9998168 -179281386 - MIR3 SINE MIR -1 207 50 293 234 122 37 chr6 9999276 9999383 -179280171 - MIR SINE MIR -71 191 76 558 296 73 49 chr6 9999718 9999965 -179279589 + MIR SINE MIR 10 262 0 1873 160 0 3 chr6 9999986 10000274 -179279280 - AluJo SINE Alu -25 287 1 1673 212 70 79 chr6 10000475 10001132 -179278422 - MLT1E1 LTR MaLR 0 654 4 278 273 125 76 chr6 10001940 10002170 -179277384 + MLT1L LTR MaLR 111 417 -198 264 250 54 11 chr6 10002227 10002319 -179277235 + MLT1L LTR MaLR 520 615 0 249 365 66 0 chr6 10003519 10003656 -179275898 - L3 LINE CR1 -89 1488 1343 207 243 0 29 chr6 10003709 10003779 -179275775 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 429 280 108 77 chr6 10004058 10004437 -179275117 + MLT1I LTR MaLR 18 408 -1 2290 87 0 0 chr6 10004745 10005034 -179274520 + AluSg SINE Alu 1 289 -21 2213 117 0 7 chr6 10006065 10006364 -179273190 - AluSx SINE Alu -15 297 1 26 0 0 0 chr6 10006734 10006760 -179272794 + AT_rich Low_complexity Low_complexity 1 26 0 2973 195 22 36 chr6 10006821 10007126 -179272428 - L1MB2 LINE L1 -76 6095 5787 429 20 0 0 chr6 10007126 10007176 -179272378 + (TA)n Simple_repeat Simple_repeat 1 50 0 2973 195 22 36 chr6 10007176 10007566 -179271988 - L1MB2 LINE L1 -384 5787 5410 224 255 31 0 chr6 10008620 10008718 -179270836 + (TA)n Simple_repeat Simple_repeat 1 101 0 2494 50 0 13 chr6 10009141 10009439 -179270115 + AluY SINE Alu 1 294 -17 319 299 70 61 chr6 10011212 10011426 -179268128 - MIR SINE MIR -40 222 7 880 234 11 0 chr6 10011662 10011846 -179267708 - MER5A DNA MER1_type -3 186 1 208 300 33 0 chr6 10012623 10012683 -179266871 - MER5A DNA MER1_type 0 189 128 1225 120 0 165 chr6 10012685 10012976 -179266578 + L1PB4 LINE L1 5912 6154 -2 303 301 75 11 chr6 10012993 10013086 -179266468 - MER5A DNA MER1_type -82 107 9 245 301 272 7 chr6 10014264 10014400 -179265154 + MER5A DNA MER1_type 18 189 0 1004 212 5 0 chr6 10014411 10014595 -179264959 + MER5A DNA MER1_type 4 188 -1 646 186 17 0 chr6 10015206 10015324 -179264230 - MSTD LTR MaLR -3 393 274 2156 148 18 3 chr6 10015342 10015680 -179263874 + LTR3b LTR ERVK 158 500 0 836 179 193 14 chr6 10015684 10015907 -179263647 - MSTD LTR MaLR -128 268 6 518 281 7 7 chr6 10015937 10016072 -179263482 + MIR SINE MIR 16 150 -58 31 0 0 0 chr6 10016171 10016202 -179263352 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr6 10016332 10016367 -179263187 + (CA)n Simple_repeat Simple_repeat 2 36 0 540 298 72 93 chr6 10016408 10016740 -179262814 + L2 LINE L2 2984 3308 -5 2446 176 4 13 chr6 10018644 10019110 -179260444 - L1MB2 LINE L1 -948 5198 4737 2807 170 24 19 chr6 10019110 10019645 -179259909 + L1MB1 LINE L1 5617 6160 -8 349 353 75 44 chr6 10019733 10020177 -179259377 - L2 LINE L2 -212 3060 2597 9978 117 7 2 chr6 10020231 10021730 -179257824 - L1PA8A LINE L1 -1197 4949 3443 6324 75 11 6 chr6 10021730 10022892 -179256662 + L1PA8A LINE L1 4962 6128 -3 481 300 81 32 chr6 10025289 10025855 -179253699 - L1ME4a LINE L1 -3 6118 5525 1965 104 56 21 chr6 10026017 10026305 -179253249 - AluSx SINE Alu -14 298 1 23 68 0 0 chr6 10026455 10026499 -179253055 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr6 10027268 10027297 -179252257 + AT_rich Low_complexity Low_complexity 1 29 0 28717 29 0 0 chr6 10027938 10032157 -179247397 - L1PA3 LINE L1 0 6155 1937 204 380 10 0 chr6 10032775 10032875 -179246679 + L2 LINE L2 3208 3308 -5 4357 193 19 15 chr6 10033934 10034218 -179245336 + L1MB2 LINE L1 5066 5347 -824 4981 148 77 39 chr6 10034218 10035250 -179244304 + MER11C LTR ERVK 1 1071 0 4357 193 19 15 chr6 10035250 10036022 -179243532 + L1MB2 LINE L1 5347 6132 -39 377 305 170 5 chr6 10036116 10036339 -179243215 + MIR SINE MIR 3 262 0 199 358 32 0 chr6 10036557 10036652 -179242902 + L2 LINE L2 2338 2435 -879 261 182 0 0 chr6 10036660 10036715 -179242839 + GA-rich Low_complexity Low_complexity 2 56 0 1928 192 78 116 chr6 10036735 10037491 -179242063 + LTR8A LTR ERV1 1 727 0 2162 104 0 4 chr6 10038918 10039222 -179240332 - AluSg SINE Alu 0 303 1 288 0 0 0 chr6 10039256 10039288 -179240266 + (CA)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr6 10039751 10039774 -179239780 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr6 10039920 10039942 -179239612 + (TAA)n Simple_repeat Simple_repeat 3 24 0 2178 129 0 0 chr6 10040651 10040961 -179238593 + AluSg SINE Alu 1 310 0 184 337 174 0 chr6 10040973 10041071 -179238483 + MIR SINE MIR 26 140 -122 27 29 0 0 chr6 10041632 10041666 -179237888 + AT_rich Low_complexity Low_complexity 1 34 0 1679 82 13 0 chr6 10042011 10042244 -179237310 - L1MA1 LINE L1 -342 5960 5725 40 0 0 0 chr6 10042260 10042300 -179237254 + AT_rich Low_complexity Low_complexity 1 40 0 5383 86 97 1 chr6 10046832 10047584 -179231970 - LTR12 LTR ERV1 -2 824 1 180 176 0 0 chr6 10048692 10048726 -179230828 + (TA)n Simple_repeat Simple_repeat 2 35 0 2198 113 0 0 chr6 10049459 10049752 -179229802 - AluSx SINE Alu -19 293 1 437 260 73 0 chr6 10050352 10050475 -179229079 - MIR SINE MIR -31 231 100 2173 113 26 47 chr6 10050764 10051145 -179228409 - THE1C LTR MaLR 0 375 3 2268 103 3 0 chr6 10051409 10051701 -179227853 + AluSq SINE Alu 3 295 -18 213 65 0 0 chr6 10052072 10052103 -179227451 + (A)n Simple_repeat Simple_repeat 1 31 0 425 256 22 7 chr6 10052617 10052754 -179226800 - L1ME4a LINE L1 -211 5910 5772 340 283 22 36 chr6 10052821 10052959 -179226595 + HAL1b LINE L1 353 488 -860 344 296 92 0 chr6 10053341 10053483 -179226071 + L1ME LINE L1 5527 5681 -440 21 0 0 0 chr6 10054206 10054227 -179225327 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr6 10055599 10055642 -179223912 + AT_rich Low_complexity Low_complexity 1 43 0 532 207 7 15 chr6 10056405 10056540 -179223014 - L1MB7 LINE L1 -12 6172 6039 23 0 0 0 chr6 10061622 10061645 -179217909 + AT_rich Low_complexity Low_complexity 1 23 0 2106 139 90 55 chr6 10062049 10062518 -179217036 + LTR12 LTR ERV1 1 485 -229 198 352 108 17 chr6 10062544 10062720 -179216834 - MIR SINE MIR -50 212 21 28 29 0 0 chr6 10062838 10062873 -179216681 + AT_rich Low_complexity Low_complexity 1 35 0 984 162 0 0 chr6 10062908 10063056 -179216498 + AluSg/x SINE Alu 136 283 -29 21 36 0 0 chr6 10063057 10063085 -179216469 + AT_rich Low_complexity Low_complexity 1 28 0 225 180 0 0 chr6 10064519 10064569 -179214985 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 310 352 11 0 chr6 10065014 10065102 -179214452 - MIR SINE MIR -154 108 20 663 263 132 4 chr6 10065137 10065388 -179214166 + L1MB5 LINE L1 5621 5903 -271 2097 199 77 66 chr6 10065388 10066021 -179213533 + MLT1E1 LTR MaLR 1 640 -14 704 282 81 15 chr6 10066322 10066829 -179212725 + L1ME LINE L1 422 971 -5099 524 279 122 65 chr6 10067135 10067536 -179212018 - L2 LINE L2 -811 2503 2080 267 193 48 36 chr6 10069367 10069450 -179210104 - L1ME4a LINE L1 -20 6101 6018 670 277 71 20 chr6 10069487 10069740 -179209814 - L2 LINE L2 -969 2345 2080 475 310 94 42 chr6 10069920 10070401 -179209153 - L1ME4a LINE L1 -261 5860 5355 290 232 21 0 chr6 10070837 10070932 -179208622 + (CATA)n Simple_repeat Simple_repeat 4 100 0 405 252 60 33 chr6 10071110 10071261 -179208293 + L2 LINE L2 2148 2302 -1012 533 305 133 0 chr6 10072656 10072882 -179206672 + MIR SINE MIR 7 262 0 239 347 0 0 chr6 10074202 10074274 -179205280 - L2 LINE L2 -7 3306 3235 12952 207 8 5 chr6 10076057 10079022 -179200532 + L1PA15 LINE L1 2283 5256 -890 3057 124 47 0 chr6 10079151 10079665 -179199889 + L1PA15 LINE L1 5441 5978 -187 644 223 129 62 chr6 10079695 10079919 -179199635 - MLT2B2 LTR ERVL -79 436 198 236 231 44 33 chr6 10082600 10082691 -179196863 - MLT1H LTR MaLR -50 499 408 2463 58 0 10 chr6 10083637 10083932 -179195622 - AluY SINE Alu -19 292 1 322 162 0 73 chr6 10084031 10084099 -179195455 - MLT2E LTR ERVL -546 82 20 180 0 0 0 chr6 10084816 10084836 -179194718 + (GAGAA)n Simple_repeat Simple_repeat 4 23 0 246 116 0 0 chr6 10088650 10088693 -179190861 + (CA)n Simple_repeat Simple_repeat 2 44 0 252 256 116 0 chr6 10089407 10089493 -179190061 - MLT1L LTR MaLR -347 268 173 24 32 0 0 chr6 10089618 10089649 -179189905 + AT_rich Low_complexity Low_complexity 1 31 0 1145 232 71 25 chr6 10089721 10090074 -179189480 - MLT1A2 LTR MaLR 0 374 6 306 0 0 0 chr6 10090154 10090188 -179189366 + (TG)n Simple_repeat Simple_repeat 2 35 0 2311 111 0 16 chr6 10090189 10090505 -179189049 - AluSx SINE Alu 0 312 2 273 269 205 29 chr6 10090592 10090763 -179188791 + L2 LINE L2 2950 3150 -163 430 110 20 80 chr6 10090765 10090865 -179188689 - L1MA10 LINE L1 -13 6321 6228 789 322 73 41 chr6 10090909 10091765 -179187789 + HERVL LTR ERVL 3226 4387 -1267 4541 74 117 118 chr6 10091774 10092601 -179186953 - LTR12 LTR ERV1 0 826 1 5370 88 14 0 chr6 10092601 10093364 -179186190 - HERV9 LTR ERV1 0 8399 7626 2093 173 85 97 chr6 10093362 10094271 -179185283 - HERV9 LTR ERV1 -5156 1740 843 * 1324 107 10 0 chr6 10094267 10094464 -179185090 - HERV9 LTR ERV1 -3445 4954 4756 * 13324 108 16 10 chr6 10094463 10097497 -179182057 - HERV9 LTR ERV1 -5427 2972 1 5372 67 135 0 chr6 10097497 10098225 -179181329 - LTR12 LTR ERV1 0 826 1 425 300 125 17 chr6 10098306 10098603 -179180951 + HERVL LTR ERVL 4514 4842 -922 518 370 103 3 chr6 10099307 10099637 -179179917 + LTR16A LTR ERVL 57 419 -31 25 31 0 0 chr6 10099786 10099818 -179179736 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr6 10100137 10100166 -179179388 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr6 10100224 10100247 -179179307 + AT_rich Low_complexity Low_complexity 1 23 0 261 267 0 0 chr6 10100961 10101021 -179178533 - MIR SINE MIR -8 254 195 1089 196 5 5 chr6 10101030 10101229 -179178325 - AluJo SINE Alu -6 306 108 2693 182 46 14 chr6 10101339 10101928 -179177626 + L1MA9 LINE L1 5392 5999 -313 1381 181 4 0 chr6 10102296 10102544 -179177010 - MLT1C LTR MaLR 0 467 219 280 301 33 59 chr6 10102548 10102701 -179176853 + L2 LINE L2 2771 2919 -395 2548 169 16 20 chr6 10102703 10103201 -179176353 - MER44D DNA MER2_type -39 566 16 534 302 133 51 chr6 10103225 10103556 -179175998 + L2 LINE L2 2938 3295 -18 207 100 0 0 chr6 10103561 10103591 -179175963 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 198 103 0 0 chr6 10104216 10104245 -179175309 + (A)n Simple_repeat Simple_repeat 1 29 0 725 193 0 0 chr6 10104245 10104364 -179175190 - AluJo SINE Alu -193 119 1 204 40 0 0 chr6 10104470 10104495 -179175059 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2157 112 0 0 chr6 10104502 10104778 -179174776 - AluSx SINE Alu -36 276 1 322 303 151 18 chr6 10105525 10105743 -179173811 - L2 LINE L2 -94 3219 2973 2185 98 0 38 chr6 10106386 10106702 -179172852 - AluSx SINE Alu -8 304 1 2327 123 0 0 chr6 10107211 10107521 -179172033 - AluSx SINE Alu -2 310 1 2495 57 0 0 chr6 10107566 10107865 -179171689 + AluY SINE Alu 1 299 -12 2268 86 40 7 chr6 10108189 10108490 -179171064 + AluSq SINE Alu 1 311 -2 23 54 0 0 chr6 10109166 10109203 -179170351 + AT_rich Low_complexity Low_complexity 1 37 0 407 67 0 17 chr6 10110594 10110654 -179168900 + (TTC)n Simple_repeat Simple_repeat 1 59 0 2147 109 26 0 chr6 10110867 10111170 -179168384 + AluSq SINE Alu 1 311 -2 454 193 57 0 chr6 10112222 10112310 -179167244 + MIR SINE MIR 78 170 -92 267 103 0 0 chr6 10112335 10112374 -179167180 + (TG)n Simple_repeat Simple_repeat 2 40 0 2265 110 0 0 chr6 10112555 10112856 -179166698 + AluSq SINE Alu 3 303 -10 1537 139 0 34 chr6 10113555 10113792 -179165762 + AluJb SINE Alu 63 291 -21 294 125 0 0 chr6 10116078 10116126 -179163428 + (TG)n Simple_repeat Simple_repeat 1 48 0 370 244 50 50 chr6 10117523 10117683 -179161871 + MIR SINE MIR 53 212 -50 253 271 104 21 chr6 10119613 10119709 -179159845 + MIR3 SINE MIR 9 112 -96 30 89 0 0 chr6 10121677 10121756 -179157798 + AT_rich Low_complexity Low_complexity 1 79 0 21 36 0 0 chr6 10121944 10121972 -179157582 + AT_rich Low_complexity Low_complexity 1 28 0 186 191 0 0 chr6 10122377 10122419 -179157135 + (TA)n Simple_repeat Simple_repeat 1 42 0 26 0 0 0 chr6 10122624 10122650 -179156904 + AT_rich Low_complexity Low_complexity 1 26 0 312 193 73 73 chr6 10124172 10124281 -179155273 - L1M4 LINE L1 -6426 116 8 1587 167 42 17 chr6 10124918 10125205 -179154349 + AluJb SINE Alu 3 296 -16 1761 148 10 21 chr6 10126097 10126388 -179153166 + AluJo SINE Alu 17 304 -8 321 43 43 0 chr6 10126850 10126896 -179152658 + L1PA7 LINE L1 6107 6154 0 1981 79 61 11 chr6 10129115 10129392 -179150162 + AluSc SINE Alu 1 291 -18 485 279 29 7 chr6 10130034 10130174 -179149380 + L2 LINE L2 3171 3313 0 23 33 0 0 chr6 10131108 10131138 -179148416 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr6 10131410 10131447 -179148107 + AT_rich Low_complexity Low_complexity 1 37 0 349 213 19 9 chr6 10131857 10131965 -179147589 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 202 344 0 42 chr6 10131977 10132073 -179147481 - L3 LINE CR1 -49 1528 1437 186 167 0 0 chr6 10132717 10132753 -179146801 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 414 282 45 0 chr6 10132754 10132864 -179146690 + MIR SINE MIR 1 115 -147 283 240 10 39 chr6 10133407 10133511 -179146043 + GA-rich Low_complexity Low_complexity 3 103 0 2277 81 0 0 chr6 10133542 10133825 -179145729 - AluY SINE Alu -28 283 1 281 233 76 23 chr6 10134086 10134258 -179145296 - L1M4 LINE L1 -848 5298 5118 275 281 97 0 chr6 10134657 10134771 -179144783 + L1ME4a LINE L1 5798 5922 -199 271 272 96 29 chr6 10134791 10134927 -179144627 + L1ME4a LINE L1 5969 6113 -8 3099 301 78 14 chr6 10135305 10136464 -179143090 + L2 LINE L2 961 2194 -1120 715 244 136 42 chr6 10136477 10136785 -179142769 + MSTD LTR MaLR 1 337 -59 7540 27 3 0 chr6 10136789 10138207 -179141347 - L1PA4 LINE L1 -5 6150 4729 21 57 0 0 chr6 10138844 10138879 -179140675 + AT_rich Low_complexity Low_complexity 1 35 0 414 333 91 37 chr6 10139142 10139385 -179140169 - MLT1I LTR MaLR -58 351 96 737 356 85 17 chr6 10139447 10139907 -179139647 + L2 LINE L2 2468 2958 -356 297 250 0 65 chr6 10140716 10140840 -179138714 + L1M4 LINE L1 2876 2991 -3155 23 33 0 0 chr6 10140934 10140964 -179138590 + AT_rich Low_complexity Low_complexity 1 30 0 313 266 94 13 chr6 10141061 10141209 -179138345 - MLT1J2 LTR MaLR -246 200 39 866 210 81 0 chr6 10141232 10141418 -179138136 - MER58A DNA MER1_type -17 207 7 348 304 107 39 chr6 10141439 10141719 -179137835 + L1ME4a LINE L1 5823 6121 0 262 333 83 35 chr6 10143725 10143869 -179135685 + MIR3 SINE MIR 43 193 -15 634 345 131 31 chr6 10143893 10144874 -179134680 + L2 LINE L2 1884 2962 -352 288 319 35 0 chr6 10144989 10145102 -179134452 + L2 LINE L2 3182 3298 -15 212 225 0 0 chr6 10146091 10146131 -179133423 + L3b LINE CR1 1535 1574 -9 1725 164 51 3 chr6 10148054 10148346 -179131208 - AluJb SINE Alu -4 308 3 1905 127 7 4 chr6 10148992 10149268 -179130286 - AluSc SINE Alu -32 277 1 286 288 31 75 chr6 10149518 10149636 -179129918 - MIR SINE MIR -77 185 74 2149 181 65 16 chr6 10149636 10150079 -179129475 + MLT1C LTR MaLR 1 465 -2 286 288 31 75 chr6 10150079 10150120 -179129434 - MIR SINE MIR -188 74 33 2348 109 0 6 chr6 10151629 10151942 -179127612 + AluSx SINE Alu 1 311 -1 1849 89 4 0 chr6 10152776 10153011 -179126543 - AluSq SINE Alu -77 236 1 361 319 18 24 chr6 10153028 10153194 -179126360 + L1MEd LINE L1 955 1119 -5000 413 257 112 95 chr6 10153196 10153687 -179125867 + HAL1 LINE L1 1811 2315 -192 5770 57 0 3 chr6 10153687 10154409 -179125145 - L1PA6 LINE L1 -5 6149 5430 413 257 112 95 chr6 10154409 10154508 -179125046 + HAL1 LINE L1 2315 2411 -96 393 206 35 106 chr6 10155722 10155784 -179123770 - MER94 DNA DNA -3 131 66 1850 154 7 3 chr6 10155784 10156076 -179123478 - AluJb SINE Alu -14 298 6 393 206 35 106 chr6 10156076 10156154 -179123400 - MER94 DNA DNA -68 66 1 239 287 50 69 chr6 10156989 10157090 -179122464 + MER5A DNA MER1_type 88 186 -3 23 0 0 0 chr6 10157142 10157165 -179122389 + AT_rich Low_complexity Low_complexity 1 23 0 568 58 31 79 chr6 10157200 10157682 -179121872 + (TA)n Simple_repeat Simple_repeat 1 458 0 254 209 104 0 chr6 10157689 10157823 -179121731 + (TATAG)n Simple_repeat Simple_repeat 3 150 0 1018 170 0 6 chr6 10158111 10158282 -179121272 - FRAM SINE Alu -13 163 1 1784 208 120 30 chr6 10158903 10158949 -179120605 + MER70A LTR ERVL 1 41 -431 1863 134 22 0 chr6 10158949 10159226 -179120328 - AluSx SINE Alu -13 299 17 1784 208 120 30 chr6 10159226 10159612 -179119942 + MER70A LTR ERVL 41 472 0 2252 92 3 10 chr6 10160764 10161067 -179118487 + AluSc SINE Alu 1 301 -8 270 0 0 0 chr6 10162254 10162284 -179117270 + (T)n Simple_repeat Simple_repeat 1 30 0 204 125 0 0 chr6 10164074 10164106 -179115448 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 214 306 8 81 chr6 10164887 10165011 -179114543 - MIR SINE MIR -30 232 118 22 35 0 0 chr6 10165183 10165212 -179114342 + AT_rich Low_complexity Low_complexity 1 29 0 185 154 39 77 chr6 10165372 10165424 -179114130 - L2 LINE L2 -1 3312 3263 209 224 17 17 chr6 10166203 10166261 -179113293 + CT-rich Low_complexity Low_complexity 4 61 0 505 284 123 20 chr6 10166265 10166469 -179113085 - L2 LINE L2 0 3313 3089 1264 240 91 48 chr6 10167023 10167098 -179112456 - Charlie4a DNA MER1_type -1454 507 437 2053 127 3 3 chr6 10167098 10167390 -179112164 - AluSq SINE Alu -21 292 1 1264 240 91 48 chr6 10167390 10167789 -179111765 - Charlie4a DNA MER1_type -1524 437 13 2331 109 0 0 chr6 10168935 10169239 -179110315 - AluSq SINE Alu -9 304 1 21 0 0 0 chr6 10169285 10169306 -179110248 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr6 10169432 10169474 -179110080 + AT_rich Low_complexity Low_complexity 1 42 0 291 289 143 25 chr6 10169644 10169830 -179109724 + MIR SINE MIR 38 244 -18 234 0 0 0 chr6 10172582 10172608 -179106946 + (TG)n Simple_repeat Simple_repeat 1 26 0 2295 141 11 29 chr6 10172630 10172982 -179106572 + THE1C LTR MaLR 1 347 -28 2168 203 71 68 chr6 10172982 10173613 -179105941 + LTR27 LTR ERV1 2 634 -2 2295 141 11 29 chr6 10173613 10173642 -179105912 + THE1C LTR MaLR 347 375 0 5883 153 57 36 chr6 10173642 10174793 -179104761 + THE1C-int LTR MaLR 1 1176 -404 13582 66 1 1 chr6 10174797 10176473 -179103081 - HERVL LTR ERVL -586 5068 3393 2604 78 0 0 chr6 10176523 10176856 -179102698 - HERVL LTR ERVL -2259 3395 3063 1404 127 106 97 chr6 10176870 10176909 -179102645 - MLT2A1 LTR ERVL 0 444 407 504 117 0 0 chr6 10176909 10176986 -179102568 + (CA)n Simple_repeat Simple_repeat 2 78 0 1404 127 106 97 chr6 10176986 10177286 -179102268 - MLT2A1 LTR ERVL -37 407 102 186 417 0 0 chr6 10177541 10177601 -179101953 - L2 LINE L2 -86 3186 3127 29 47 0 0 chr6 10177774 10177817 -179101737 + AT_rich Low_complexity Low_complexity 1 43 0 1984 152 7 0 chr6 10177936 10178233 -179101321 + AluSx SINE Alu 3 301 -11 828 348 109 44 chr6 10179601 10180916 -179098638 + L2 LINE L2 1701 3090 -182 1945 158 0 6 chr6 10181028 10181339 -179098215 + AluSg SINE Alu 1 309 -1 774 322 82 40 chr6 10181579 10182156 -179097398 - L3 LINE CR1 -1 1576 976 2117 172 52 2 chr6 10182570 10182978 -179096576 + MSTA LTR MaLR 1 428 0 296 197 13 0 chr6 10183321 10183397 -179096157 + L1ME LINE L1 5765 5841 -280 778 242 50 46 chr6 10185493 10185745 -179093809 - MIR SINE MIR -8 254 13 22 0 0 0 chr6 10186472 10186494 -179093060 + AT_rich Low_complexity Low_complexity 1 22 0 338 330 34 1 chr6 10187805 10187974 -179091580 - MIR3 SINE MIR -30 178 3 1889 131 10 24 chr6 10188597 10188894 -179090660 + AluSx SINE Alu 1 293 -19 265 304 13 13 chr6 10189191 10189270 -179090284 - L2 LINE L2 -8 3305 3227 230 304 98 69 chr6 10189596 10189800 -179089754 + MIR SINE MIR 3 212 -50 295 257 37 64 chr6 10190077 10190186 -179089368 - MIR SINE MIR -104 158 53 204 158 0 0 chr6 10190277 10190315 -179089239 + (CA)n Simple_repeat Simple_repeat 1 38 0 2112 125 3 3 chr6 10190456 10190769 -179088785 + AluSq SINE Alu 1 313 0 298 287 16 93 chr6 10191570 10191699 -179087855 - L2 LINE L2 -15 3257 3139 1937 123 17 3 chr6 10191716 10192009 -179087545 + AluSx SINE Alu 1 297 -15 1109 267 16 0 chr6 10192989 10193236 -179086318 + MIR SINE MIR 12 262 0 572 268 77 24 chr6 10194116 10194502 -179085052 - L1ME LINE L1 -587 5579 5172 227 265 39 59 chr6 10194506 10194608 -179084946 - L1MC4 LINE L1 -1 8041 7942 217 213 33 0 chr6 10194613 10194674 -179084880 + (TA)n Simple_repeat Simple_repeat 1 63 0 229 295 100 14 chr6 10194684 10194894 -179084660 - L1ME LINE L1 -987 5159 4932 232 297 11 11 chr6 10194977 10195068 -179084486 + (CATA)n Simple_repeat Simple_repeat 4 94 0 482 181 7 22 chr6 10195099 10195237 -179084317 + (TA)n Simple_repeat Simple_repeat 1 136 0 234 0 0 0 chr6 10195363 10195389 -179084165 + (T)n Simple_repeat Simple_repeat 1 26 0 916 196 0 0 chr6 10195492 10195660 -179083894 - L1PA15 LINE L1 0 6165 5998 249 274 181 34 chr6 10196197 10196434 -179083120 - L1ME LINE L1 -3197 2949 2678 462 307 94 53 chr6 10196477 10196966 -179082588 - L1ME LINE L1 -3528 2618 2110 430 293 133 6 chr6 10197440 10197621 -179081933 + MIR SINE MIR 49 252 -10 1588 252 93 6 chr6 10197724 10198264 -179081290 - L1MC4 LINE L1 -141 7901 7315 1828 270 121 7 chr6 10198277 10198866 -179080688 + MLT2F LTR ERVL 1 656 -7 454 237 101 0 chr6 10198907 10199046 -179080508 - L1MC4 LINE L1 -1431 6611 6459 2552 173 16 10 chr6 10200117 10200621 -179078933 + L1MB1 LINE L1 5661 6167 -1 326 315 67 67 chr6 10201226 10201493 -179078061 - HAL1 LINE L1 -938 1569 1303 2363 63 0 31 chr6 10201564 10201881 -179077673 - AluY SINE Alu -4 307 1 544 249 150 47 chr6 10202080 10202163 -179077391 + MIR SINE MIR 26 99 -163 2247 72 0 0 chr6 10202163 10202440 -179077114 - AluY SINE Alu 0 311 35 544 249 150 47 chr6 10202440 10202549 -179077005 + MIR SINE MIR 99 238 -24 221 196 36 0 chr6 10203459 10203515 -179076039 + (CA)n Simple_repeat Simple_repeat 1 58 0 233 270 61 68 chr6 10205012 10205160 -179074394 + MIR SINE MIR 95 241 -21 2435 145 47 0 chr6 10205907 10206314 -179073240 + MSTB LTR MaLR 1 426 0 345 197 0 0 chr6 10207109 10207180 -179072374 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 1693 150 17 81 chr6 10207818 10208225 -179071329 - L1MA8 LINE L1 0 6291 5911 42 95 0 0 chr6 10209067 10209193 -179070361 + AT_rich Low_complexity Low_complexity 1 126 0 217 184 82 0 chr6 10209268 10209317 -179070237 - L2 LINE L2 0 3313 3261 770 217 19 14 chr6 10210841 10211053 -179068501 + MER33 DNA MER1_type 1 213 -111 1091 135 0 34 chr6 10211062 10211240 -179068314 + AluJb SINE Alu 129 300 -12 356 242 6 19 chr6 10211478 10211635 -179067919 + (TA)n Simple_repeat Simple_repeat 1 155 0 2039 139 7 7 chr6 10211719 10212029 -179067525 + AluSx SINE Alu 1 310 -2 252 0 0 0 chr6 10212683 10212711 -179066843 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7445 33 0 0 chr6 10212712 10213904 -179065650 - L1PA5 LINE L1 -13 6141 4951 2076 36 0 0 chr6 10213905 10214156 -179065398 + L1PA5 LINE L1 4678 4928 -1218 470 272 95 6 chr6 10214765 10214923 -179064631 - MIR SINE MIR 0 262 91 898 168 69 108 chr6 10215307 10215526 -179064028 + MER33 DNA MER1_type 2 205 -2380 1976 113 39 0 chr6 10215526 10215809 -179063745 + AluSx SINE Alu 1 294 -18 898 168 69 108 chr6 10215809 10215923 -179063631 + MER33 DNA MER1_type 205 322 -2 259 269 67 42 chr6 10215989 10216108 -179063446 - L2 LINE L2 -12 3301 3180 622 137 40 9 chr6 10217510 10217737 -179061817 + (TA)n Simple_repeat Simple_repeat 1 234 0 24 32 0 0 chr6 10218233 10218264 -179061290 + AT_rich Low_complexity Low_complexity 1 31 0 191 270 131 66 chr6 10218607 10218744 -179060810 + MIR SINE MIR 104 249 -13 251 317 41 32 chr6 10218815 10218938 -179060616 - MIR SINE MIR -108 154 31 881 217 22 0 chr6 10219099 10219283 -179060271 + MER5A DNA MER1_type 2 189 0 2064 178 14 0 chr6 10219494 10219854 -179059700 + MLT1A1 LTR MaLR 1 365 0 2196 108 0 52 chr6 10220611 10220936 -179058618 + AluSp SINE Alu 4 311 -2 4019 87 5 7 chr6 10221385 10221940 -179057614 - MER41A LTR ERV1 0 554 1 180 77 0 0 chr6 10222543 10222569 -179056985 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 202 254 109 0 chr6 10223785 10223840 -179055714 - MIR SINE MIR -11 251 191 257 356 149 16 chr6 10224166 10224360 -179055194 + MIR SINE MIR 22 241 -21 223 343 48 18 chr6 10224826 10224992 -179054562 + MIR SINE MIR 8 178 -84 1245 248 52 22 chr6 10224997 10225400 -179054154 - MER66A LTR ERV1 -21 457 43 2292 48 48 10 chr6 10225416 10225705 -179053849 - AluY SINE Alu -11 300 1 380 179 83 0 chr6 10226409 10226493 -179053061 + MER20B DNA MER1_type 13 103 -680 557 103 0 5 chr6 10226493 10226576 -179052978 + Tigger4(Zombi) DNA MER2_type 3 2731 0 1191 297 74 28 chr6 10226653 10227232 -179052322 + MER20B DNA MER1_type 175 780 -3 450 321 29 43 chr6 10227237 10227446 -179052108 + MIR SINE MIR 11 216 -46 2251 104 3 0 chr6 10227499 10227808 -179051746 - AluSq SINE Alu 0 313 4 4300 149 90 24 chr6 10228032 10228879 -179050675 + MER4D LTR ERV1 1 903 0 202 319 77 66 chr6 10228899 10229172 -179050382 - L2 LINE L2 -613 2701 2426 2103 106 0 14 chr6 10229917 10230209 -179049345 - AluSc SINE Alu -21 288 1 2665 221 28 64 chr6 10230230 10231044 -179048510 - L1ME1 LINE L1 -5 6161 5377 346 234 0 65 chr6 10231068 10231192 -179048362 - L1ME1 LINE L1 -948 5198 5083 459 189 22 11 chr6 10231193 10231283 -179048271 + MER5B DNA MER1_type 88 178 0 235 290 0 16 chr6 10231291 10231353 -179048201 - MER5A DNA MER1_type 0 189 129 210 325 138 55 chr6 10231473 10231856 -179047698 - L2 LINE L2 -527 2787 2355 2831 3 0 3 chr6 10231856 10232166 -179047388 + AluYa5 SINE Alu 1 309 -2 210 325 138 55 chr6 10232166 10232259 -179047295 - L2 LINE L2 -959 2355 2271 410 94 16 0 chr6 10234359 10234423 -179045131 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 917 250 89 44 chr6 10235162 10235478 -179044076 + LTR16C LTR ERVL 156 485 -6 2394 94 0 0 chr6 10235778 10236087 -179043467 + AluSc SINE Alu 1 309 0 743 360 50 38 chr6 10236103 10236977 -179042577 + HERV16 LTR ERVL 362 1246 -3750 2216 128 0 0 chr6 10237051 10237357 -179042197 - AluSx SINE Alu -6 306 1 237 310 82 32 chr6 10237616 10237897 -179041657 - L1ME LINE L1 -347 5774 5480 492 168 0 5 chr6 10238308 10238485 -179041069 + AluJo SINE Alu 11 275 -37 365 82 0 16 chr6 10239595 10239656 -179039898 + L1PA6 LINE L1 6094 6153 -1 280 302 0 65 chr6 10241025 10241164 -179038390 - Charlie8 DNA MER1_type -2202 215 86 396 346 56 45 chr6 10241374 10241429 -179038125 + L2 LINE L2 3004 3057 -215 411 68 0 0 chr6 10241429 10241488 -179038066 + (CA)n Simple_repeat Simple_repeat 1 59 0 396 346 56 45 chr6 10241488 10241698 -179037856 + L2 LINE L2 3057 3272 0 22 0 0 0 chr6 10242614 10242636 -179036918 + AT_rich Low_complexity Low_complexity 1 22 0 295 233 126 10 chr6 10243712 10243815 -179035739 + MER94 DNA DNA 7 121 -13 473 264 68 20 chr6 10246837 10246985 -179032569 + MER5B DNA MER1_type 24 178 0 2111 169 83 14 chr6 10246997 10247428 -179032126 - LOR1b LTR ERV1 0 461 1 341 246 0 0 chr6 10247978 10248043 -179031511 + MER91B DNA MER1_type 1 65 -125 2175 121 3 0 chr6 10248785 10249092 -179030462 + AluSq SINE Alu 1 308 -5 198 307 173 0 chr6 10249176 10249251 -179030303 - L2 LINE L2 -25 3247 3160 255 152 0 0 chr6 10249664 10249710 -179029844 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 314 315 112 14 chr6 10250532 10250675 -179028879 + MLT1K LTR MaLR 323 479 -109 445 363 41 14 chr6 10250769 10251064 -179028490 + LTR16A LTR ERVL 70 372 -78 207 0 0 0 chr6 10251765 10251788 -179027766 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 529 159 0 0 chr6 10251803 10251891 -179027663 - AluJ/FLAM SINE Alu -224 88 1 6452 91 6 0 chr6 10251995 10253400 -179026154 - L1PA10 LINE L1 -8 6160 4751 477 301 151 66 chr6 10255108 10255672 -179023882 + L2 LINE L2 2059 2670 -644 594 104 0 0 chr6 10255721 10255817 -179023737 + (TC)n Simple_repeat Simple_repeat 2 97 0 240 35 0 0 chr6 10256522 10256551 -179023003 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr6 10256560 10256583 -179022971 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2269 80 0 3 chr6 10256585 10256871 -179022683 - AluSg SINE Alu -25 285 1 269 308 60 26 chr6 10259597 10259714 -179019840 + L2 LINE L2 3146 3266 -6 264 271 25 42 chr6 10261152 10261270 -179018284 + L2 LINE L2 3190 3305 -8 316 346 20 0 chr6 10262187 10262288 -179017266 - MER5A DNA MER1_type 0 189 87 264 258 32 8 chr6 10262314 10262438 -179017116 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 3266 225 45 10 chr6 10263326 10264863 -179014691 - L1MB8 LINE L1 -290 5888 4119 3906 155 48 23 chr6 10264864 10265555 -179013999 + MER50 LTR ERV1 3 710 -24 487 257 18 0 chr6 10265557 10265666 -179013888 - L1MB8 LINE L1 -2023 4123 4013 329 267 103 36 chr6 10265669 10265834 -179013720 - MIR SINE MIR -38 224 49 2876 6 0 21 chr6 10266137 10266462 -179013092 - AluYb8 SINE Alu 0 318 1 23 68 0 0 chr6 10266559 10266603 -179012951 + AT_rich Low_complexity Low_complexity 1 44 0 270 95 0 0 chr6 10270397 10270439 -179009115 + (GA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr6 10271569 10271591 -179007963 + AT_rich Low_complexity Low_complexity 1 22 0 408 20 0 0 chr6 10271807 10271856 -179007698 + (TG)n Simple_repeat Simple_repeat 2 50 0 326 265 119 63 chr6 10274150 10274418 -179005136 - L1ME4a LINE L1 -218 5903 5621 1685 230 61 75 chr6 10274728 10275492 -179004062 - LTR1B LTR ERV1 -15 811 1 549 306 29 29 chr6 10275975 10276145 -179003409 - MIR SINE MIR -57 205 36 41616 74 5 5 chr6 10276346 10282874 -178996680 - L1PA5 LINE L1 -4 6150 11 567 247 35 119 chr6 10282957 10283301 -178996253 - L1MC4a LINE L1 -1866 5942 5628 21 71 0 0 chr6 10283640 10283682 -178995872 + AT_rich Low_complexity Low_complexity 1 42 0 2040 87 6 113 chr6 10283699 10284043 -178995511 - AluSc SINE Alu -2 307 1 180 0 0 0 chr6 10284074 10284094 -178995460 + (TTTTTA)n Simple_repeat Simple_repeat 6 25 0 351 0 0 0 chr6 10284947 10284986 -178994568 + (T)n Simple_repeat Simple_repeat 1 39 0 649 249 86 10 chr6 10285111 10285308 -178994246 - LTR50 LTR ERVL -573 222 11 343 259 0 0 chr6 10285323 10285408 -178994146 + L1ME3A LINE L1 6082 6166 -4 2325 138 35 30 chr6 10287283 10287711 -178991843 + Tigger2a DNA MER2_type 2 431 -3 245 317 49 0 chr6 10288374 10288456 -178991098 + L2 LINE L2 3179 3264 -8 229 212 62 115 chr6 10288798 10288911 -178990643 + L2 LINE L2 3207 3313 0 318 306 104 31 chr6 10289198 10289422 -178990132 - MIR SINE MIR -3 259 23 347 250 33 33 chr6 10289495 10289615 -178989939 + MER103 DNA DNA 45 164 -2 1213 113 20 10 chr6 10289722 10289917 -178989637 - L1PA8 LINE L1 -2 6170 5974 1597 85 0 5 chr6 10289917 10290141 -178989413 + L1PA8 LINE L1 5721 5943 -188 294 313 0 0 chr6 10290442 10290525 -178989029 - MIR SINE MIR -60 202 120 183 80 0 0 chr6 10290792 10290817 -178988737 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 377 327 0 36 chr6 10291517 10291682 -178987872 - MIR SINE MIR -50 212 54 2633 174 42 53 chr6 10292041 10292706 -178986848 + L1MB4 LINE L1 5173 5816 -364 2473 53 3 0 chr6 10292706 10293009 -178986545 + AluY SINE Alu 1 304 -7 2633 174 42 53 chr6 10293009 10293056 -178986498 + L1MB4 LINE L1 5816 5862 -318 675 164 16 16 chr6 10293049 10293177 -178986377 + L1P LINE L1 4947 5074 -1072 * 1586 160 47 13 chr6 10293213 10293531 -178986023 + L1MB4 LINE L1 5852 6180 0 2279 96 3 7 chr6 10294003 10294305 -178985249 + AluSg SINE Alu 1 301 -9 1042 147 0 0 chr6 10294305 10294512 -178985042 + AluSq SINE Alu 134 340 0 318 318 62 36 chr6 10296546 10296738 -178982816 + MIR3 SINE MIR 9 205 -3 2545 121 8 0 chr6 10297257 10297629 -178981925 + THE1C LTR MaLR 1 375 0 255 324 50 50 chr6 10297763 10297945 -178981609 - MIR SINE MIR -32 230 49 276 120 0 0 chr6 10299204 10299254 -178980300 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr6 10300822 10300843 -178978711 + AT_rich Low_complexity Low_complexity 1 21 0 543 287 62 10 chr6 10301393 10301588 -178977966 + MIR SINE MIR 46 250 -12 2361 109 0 3 chr6 10303314 10303627 -178975927 + AluSx SINE Alu 1 312 0 243 241 132 71 chr6 10303819 10304033 -178975521 - L1 LINE L1 -1705 4441 4182 249 83 0 0 chr6 10304033 10304069 -178975485 + (TAA)n Simple_repeat Simple_repeat 2 37 0 243 241 132 71 chr6 10304069 10304181 -178975373 - L1 LINE L1 -1964 4182 4078 869 169 90 6 chr6 10304460 10304637 -178974917 - LTR47A LTR ERVL 0 452 261 364 226 21 21 chr6 10306602 10306695 -178972859 + MER103 DNA DNA 55 147 -19 186 394 31 8 chr6 10306793 10306920 -178972634 - L2 LINE L2 0 3272 3143 255 352 23 55 chr6 10306929 10307057 -178972497 + L2 LINE L2 3149 3272 0 862 188 0 18 chr6 10308896 10309061 -178970493 - MER5A DNA MER1_type -25 164 3 619 206 144 45 chr6 10309507 10309787 -178969767 - MLT1D LTR MaLR -43 347 59 843 231 55 107 chr6 10309809 10310212 -178969342 - MLT2C2 LTR ERVL 0 464 83 276 224 15 45 chr6 10310242 10310309 -178969245 - MLT1D LTR MaLR -440 65 1 819 332 52 50 chr6 10310475 10311154 -178968400 - HERVL LTR ERVL -396 5368 4717 2271 73 0 30 chr6 10311154 10311455 -178968099 - AluY SINE Alu -19 292 1 819 332 52 50 chr6 10311455 10311930 -178967624 - HERVL LTR ERVL -1047 4717 4244 440 306 13 39 chr6 10312157 10312387 -178967167 - HERVL LTR ERVL -1485 4000 3777 348 209 11 44 chr6 10314533 10314624 -178964930 + L1MC4a LINE L1 6794 6881 -927 1005 207 43 110 chr6 10314624 10314916 -178964638 - MLT1A1 LTR MaLR 0 365 104 1579 126 99 90 chr6 10314916 10315250 -178964304 + MER1B DNA MER1_type 1 337 0 1005 207 43 110 chr6 10315250 10315348 -178964206 - MLT1A1 LTR MaLR -261 104 1 2360 225 88 45 chr6 10315359 10316183 -178963371 + L1MC4 LINE L1 6965 7828 -167 186 43 0 0 chr6 10316183 10316206 -178963348 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2360 225 88 45 chr6 10316206 10316382 -178963172 + L1MC4 LINE L1 7828 7995 0 422 189 35 51 chr6 10316766 10316910 -178962644 + L1ME3 LINE L1 6027 6162 -8 297 320 8 0 chr6 10319973 10320098 -178959456 + (TA)n Simple_repeat Simple_repeat 2 127 0 21 0 0 0 chr6 10320148 10320169 -178959385 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr6 10320294 10320323 -178959231 + AT_rich Low_complexity Low_complexity 1 29 0 886 174 46 78 chr6 10321539 10321757 -178957797 - MER20 DNA MER1_type -3 216 6 189 0 0 0 chr6 10322169 10322190 -178957364 + (T)n Simple_repeat Simple_repeat 1 21 0 2488 76 0 0 chr6 10323364 10323668 -178955886 + AluSp SINE Alu 1 304 -9 22 0 0 0 chr6 10324929 10324951 -178954603 + AT_rich Low_complexity Low_complexity 1 22 0 186 402 30 12 chr6 10325918 10326082 -178953472 - L2 LINE L2 -210 3062 2896 362 267 102 45 chr6 10328610 10328786 -178950768 + MER117 DNA MER1_type 11 196 -1 21 0 0 0 chr6 10329317 10329338 -178950216 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr6 10329378 10329428 -178950126 + AT_rich Low_complexity Low_complexity 1 50 0 2202 121 0 7 chr6 10330121 10330427 -178949127 + AluSx SINE Alu 1 304 -8 743 323 60 60 chr6 10330891 10331445 -178948109 + HAL1b LINE L1 47 600 -748 4806 179 18 20 chr6 10331445 10332341 -178947213 - MER54A LTR ERVL 0 901 8 568 189 56 103 chr6 10332952 10333185 -178946369 + L1MC5 LINE L1 6738 6959 -1002 906 163 32 116 chr6 10333269 10333520 -178946034 - MSTD LTR MaLR 0 396 167 487 304 70 5 chr6 10333539 10333740 -178945814 + MIR SINE MIR 49 262 0 230 232 18 0 chr6 10334073 10334129 -178945425 + MER91 DNA MER1_type 2 58 -82 1978 138 37 40 chr6 10334301 10334677 -178944877 + THE1C LTR MaLR 1 375 0 280 303 189 0 chr6 10334820 10334942 -178944612 + L2 LINE L2 3127 3271 -1 2052 129 3 16 chr6 10335415 10335718 -178943836 - AluSx SINE Alu -10 302 4 212 333 40 0 chr6 10337064 10337139 -178942415 + L2 LINE L2 3193 3270 -2 24 0 0 0 chr6 10338334 10338358 -178941196 + AT_rich Low_complexity Low_complexity 1 24 0 287 340 38 0 chr6 10338793 10338899 -178940655 + MIR SINE MIR 58 167 -95 1997 131 31 3 chr6 10338981 10339272 -178940282 + AluSp SINE Alu 1 299 -14 204 281 47 0 chr6 10339283 10339347 -178940207 + MIR SINE MIR 196 262 0 2940 245 35 62 chr6 10339530 10339727 -178939827 + L1ME3A LINE L1 3847 4048 -2098 1652 168 21 7 chr6 10339727 10340018 -178939536 - AluJb SINE Alu -13 299 5 2940 245 35 62 chr6 10340018 10340529 -178939025 + L1ME3A LINE L1 4048 4511 -1635 2175 122 0 0 chr6 10340529 10340823 -178938731 + AluSx SINE Alu 1 294 -18 2940 245 35 62 chr6 10340823 10341337 -178938217 + L1ME3A LINE L1 4511 5037 -1109 639 218 17 75 chr6 10341318 10341557 -178937997 + L1ME3A LINE L1 5923 6147 -23 * 311 353 24 94 chr6 10341795 10342050 -178937504 - L2 LINE L2 0 3272 3036 360 0 0 0 chr6 10342103 10342143 -178937411 + (TG)n Simple_repeat Simple_repeat 1 40 0 270 0 0 0 chr6 10342142 10342172 -178937382 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 208 362 14 0 chr6 10342257 10342326 -178937228 + L3 LINE CR1 1289 1358 -219 191 309 0 0 chr6 10342464 10342519 -178937035 + L3 LINE CR1 1517 1571 -6 819 133 21 14 chr6 10343163 10343306 -178936248 - L1PB4 LINE L1 -2 6154 6011 467 138 11 0 chr6 10344137 10344224 -178935330 + (TA)n Simple_repeat Simple_repeat 1 88 0 219 221 29 36 chr6 10344368 10344508 -178935046 + GA-rich Low_complexity Low_complexity 3 141 0 308 273 62 57 chr6 10346337 10346513 -178933041 - MLT1J LTR MaLR -92 419 243 186 103 0 0 chr6 10346926 10346955 -178932599 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2149 118 0 3 chr6 10347141 10347430 -178932124 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr6 10347666 10347688 -178931866 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 10348101 10348129 -178931425 + AT_rich Low_complexity Low_complexity 1 28 0 194 281 56 56 chr6 10348505 10348594 -178930960 - MIR3 SINE MIR -30 178 90 234 280 67 27 chr6 10350663 10350738 -178928816 - MIR SINE MIR -119 143 66 22 0 0 0 chr6 10351669 10351691 -178927863 + AT_rich Low_complexity Low_complexity 1 22 0 282 323 15 8 chr6 10351912 10352042 -178927512 - L1ME LINE L1 -296 5849 5719 299 306 104 3 chr6 10352334 10352631 -178926923 - L1ME LINE L1 -1538 4591 4265 268 319 125 19 chr6 10352716 10352876 -178926678 - L2 LINE L2 -1208 2106 1930 181 371 0 0 chr6 10352918 10353007 -178926547 - L2 LINE L2 -1483 1831 1743 2162 119 0 0 chr6 10353295 10353616 -178925938 - AluSx SINE Alu 0 312 1 389 310 69 50 chr6 10353620 10354739 -178924815 - L1ME LINE L1 -2166 3963 2824 469 328 43 48 chr6 10354833 10355184 -178924370 - L1ME LINE L1 -5368 751 403 2497 214 83 82 chr6 10355428 10355542 -178924012 + MER21B LTR ERV1 13 125 -738 2207 125 58 3 chr6 10355542 10355887 -178923667 + THE1B LTR MaLR 1 364 0 2497 214 83 82 chr6 10355887 10356618 -178922936 + MER21B LTR ERV1 125 859 -4 1127 198 9 4 chr6 10356653 10356880 -178922674 - L1MC1 LINE L1 0 6333 6106 306 274 0 0 chr6 10356892 10356976 -178922578 - L1ME LINE L1 -5994 125 42 480 285 7 7 chr6 10357660 10357797 -178921757 + MIR SINE MIR 12 148 -114 1735 116 12 4 chr6 10357797 10358055 -178921499 + MER41B LTR ERV1 1 260 -375 1880 115 7 54 chr6 10358692 10359009 -178920545 - AluSg SINE Alu 0 303 1 370 376 39 6 chr6 10359401 10359579 -178919975 - MLT1J LTR MaLR -50 461 278 415 301 38 75 chr6 10360161 10360453 -178919101 + L3b LINE CR1 1109 1389 -194 44 96 0 0 chr6 10360979 10361114 -178918440 + AT_rich Low_complexity Low_complexity 1 135 0 198 364 23 11 chr6 10361115 10361203 -178918351 - MIR SINE MIR -126 136 48 328 305 40 66 chr6 10361711 10362059 -178917495 + L1MEd LINE L1 597 935 -5184 332 280 59 29 chr6 10362467 10362611 -178916943 + MIR SINE MIR 47 195 -51 2038 119 11 0 chr6 10363786 10364114 -178915440 - AluSc SINE Alu 0 331 1 22 56 0 0 chr6 10365379 10365415 -178914139 + AT_rich Low_complexity Low_complexity 1 36 0 294 206 32 0 chr6 10365486 10365549 -178914005 + MIR SINE MIR 56 120 -142 1471 200 7 4 chr6 10365592 10365862 -178913692 - AluJo SINE Alu -30 282 12 12263 206 23 23 chr6 10366337 10371034 -178908520 - L1MA4 LINE L1 -6 6476 1804 3283 239 31 6 chr6 10371035 10371984 -178907570 - L1MA4 LINE L1 -4585 1743 772 3948 211 6 0 chr6 10372014 10372720 -178906834 - L1MA4 LINE L1 -4618 710 1 22 35 0 0 chr6 10372773 10372802 -178906752 + AT_rich Low_complexity Low_complexity 1 29 0 1603 161 88 21 chr6 10372990 10373215 -178906339 + L1MA9 LINE L1 5915 6123 -189 324 0 0 0 chr6 10373215 10373251 -178906303 + (TC)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr6 10373250 10373274 -178906280 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1603 161 88 21 chr6 10373251 10373421 -178906133 + L1MA9 LINE L1 6123 6312 0 23 33 0 0 chr6 10373688 10373718 -178905836 + AT_rich Low_complexity Low_complexity 1 30 0 1983 141 144 11 chr6 10374142 10374518 -178905036 - MSTA LTR MaLR 0 428 3 468 330 34 0 chr6 10376151 10376330 -178903224 + L2 LINE L2 3129 3313 0 185 262 143 24 chr6 10376449 10376533 -178903021 + MIR SINE MIR 118 211 -51 281 312 43 0 chr6 10376854 10376947 -178902607 - HERVL LTR ERVL -316 5338 5242 1459 249 46 11 chr6 10376997 10377519 -178902035 + L1M4 LINE L1 2640 3179 -2967 1179 216 47 16 chr6 10378452 10378707 -178900847 - AluJb SINE Alu -49 263 1 21 0 0 0 chr6 10378743 10378764 -178900790 + AT_rich Low_complexity Low_complexity 1 21 0 467 244 78 93 chr6 10379044 10379249 -178900305 - MIR SINE MIR -11 251 50 210 282 0 71 chr6 10379276 10379314 -178900240 + L2 LINE L2 3189 3219 -53 2163 180 105 38 chr6 10379314 10379837 -178899717 + MER74A LTR ERVL 1 558 0 210 282 0 71 chr6 10379837 10379883 -178899671 + L2 LINE L2 3219 3267 -5 2308 91 3 0 chr6 10379966 10380262 -178899292 + AluSq SINE Alu 1 297 -16 213 65 0 0 chr6 10384842 10384873 -178894681 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 279 0 0 0 chr6 10384991 10385022 -178894532 + (TG)n Simple_repeat Simple_repeat 2 32 0 953 109 0 0 chr6 10385359 10385497 -178894057 - AluSg/x SINE Alu 0 310 173 2107 120 3 19 chr6 10386366 10386675 -178892879 + AluSp SINE Alu 1 304 -9 662 200 213 0 chr6 10386738 10386888 -178892666 + MER5A DNA MER1_type 3 184 -5 2015 91 0 7 chr6 10386888 10387163 -178892391 + AluY SINE Alu 1 273 -38 21 36 0 0 chr6 10387328 10387356 -178892198 + AT_rich Low_complexity Low_complexity 1 28 0 694 243 68 10 chr6 10387403 10387609 -178891945 - MER20 DNA MER1_type 0 219 2 203 339 0 0 chr6 10387663 10387719 -178891835 - L2 LINE L2 -16 3256 3201 2174 103 0 41 chr6 10387754 10388073 -178891481 + AluSg SINE Alu 1 306 -4 223 416 10 0 chr6 10388267 10388368 -178891186 + MIR SINE MIR 20 121 -87 2066 114 0 3 chr6 10388370 10388667 -178890887 - AluSg SINE Alu -14 296 1 256 298 94 47 chr6 10388774 10388945 -178890609 - MIR SINE MIR -4 258 80 184 302 0 32 chr6 10389174 10389237 -178890317 - L2 LINE L2 -5 3308 3248 198 0 0 0 chr6 10389377 10389399 -178890155 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr6 10389401 10389423 -178890131 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2528 45 3 16 chr6 10389893 10390205 -178889349 - AluY SINE Alu -3 308 1 231 157 20 20 chr6 10390852 10390903 -178888651 + GA-rich Low_complexity Low_complexity 3 53 0 2426 109 17 0 chr6 10391701 10392050 -178887504 + L1PA11 LINE L1 5818 6172 -2 39 0 0 0 chr6 10392756 10392795 -178886759 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr6 10393314 10393342 -178886212 + AT_rich Low_complexity Low_complexity 1 28 0 337 359 8 8 chr6 10393601 10393718 -178885836 + MIR3 SINE MIR 85 201 -7 216 97 0 0 chr6 10394459 10394490 -178885064 + (TTG)n Simple_repeat Simple_repeat 2 32 0 328 323 50 27 chr6 10395610 10395830 -178883724 + L1M4b LINE L1 24 248 -6611 180 111 0 0 chr6 10396326 10396353 -178883201 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 1722 256 86 55 chr6 10396358 10398527 -178881027 + L1M4b LINE L1 1207 3307 -3650 7657 27 0 0 chr6 10398527 10400010 -178879544 - L1PA4 LINE L1 0 6155 4673 1910 134 30 13 chr6 10400011 10400309 -178879245 + AluSx SINE Alu 1 303 -9 1722 256 86 55 chr6 10400309 10400321 -178879233 + L1M4b LINE L1 3307 3317 -3640 207 0 0 0 chr6 10400321 10400344 -178879210 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1722 256 86 55 chr6 10400344 10400554 -178879000 + L1M4b LINE L1 3317 3782 -3175 1324 221 6 48 chr6 10400556 10400913 -178878641 + L1MB7 LINE L1 5834 6175 -9 22 80 0 0 chr6 10401474 10401524 -178878030 + AT_rich Low_complexity Low_complexity 1 50 0 307 311 68 89 chr6 10401974 10402389 -178877165 - MLT1H LTR MaLR -143 406 1 527 309 94 16 chr6 10402975 10403231 -178876323 + MLT1J2 LTR MaLR 67 342 -108 782 172 0 15 chr6 10403262 10403396 -178876158 + FLAM_A SINE Alu 1 132 -1 336 228 12 18 chr6 10403396 10403563 -178875991 + (TA)n Simple_repeat Simple_repeat 1 166 0 237 270 11 0 chr6 10403566 10403655 -178875899 + L1MC4 LINE L1 6614 6703 -1339 360 0 0 0 chr6 10403702 10403742 -178875812 + (CA)n Simple_repeat Simple_repeat 2 41 0 192 184 0 0 chr6 10406625 10406674 -178872880 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr6 10406875 10406897 -178872657 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 10408640 10408664 -178870890 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 10408883 10408923 -178870631 + AT_rich Low_complexity Low_complexity 1 40 0 204 219 0 0 chr6 10411038 10411079 -178868475 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 418 301 13 51 chr6 10411911 10412067 -178867487 + MIR3 SINE MIR 46 195 -13 235 202 28 64 chr6 10412077 10412186 -178867368 + (TTATA)n Simple_repeat Simple_repeat 2 106 0 299 274 245 0 chr6 10412699 10412801 -178866753 + MIR SINE MIR 78 204 -58 212 246 0 31 chr6 10412809 10412874 -178866680 + T-rich Low_complexity Low_complexity 2 64 0 682 250 43 0 chr6 10414158 10414322 -178865232 - MER5B DNA MER1_type -1 177 7 32 26 0 0 chr6 10414533 10414572 -178864982 + AT_rich Low_complexity Low_complexity 1 39 0 199 344 0 31 chr6 10415107 10415171 -178864383 - L2 LINE L2 -22 3291 3230 405 294 56 72 chr6 10415636 10416081 -178863473 - L1ME4a LINE L1 -215 5906 5469 22 56 0 0 chr6 10416477 10416513 -178863041 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr6 10417233 10417259 -178862295 + AT_rich Low_complexity Low_complexity 1 26 0 273 283 0 10 chr6 10418838 10418937 -178860617 + (TA)n Simple_repeat Simple_repeat 2 99 0 2208 78 6 37 chr6 10419614 10419954 -178859600 - AluY SINE Alu 0 311 1 419 316 62 16 chr6 10419980 10420295 -178859259 - MLT1H1 LTR MaLR -2 553 226 474 281 129 36 chr6 10420464 10420798 -178858756 - LTR16A1 LTR ERVL -45 412 48 21 36 0 0 chr6 10421559 10421587 -178857967 + AT_rich Low_complexity Low_complexity 1 28 0 1914 136 45 0 chr6 10422292 10422578 -178856976 + AluSx SINE Alu 4 302 -10 318 26 0 0 chr6 10422675 10422714 -178856840 + (TG)n Simple_repeat Simple_repeat 2 40 0 1223 135 5 0 chr6 10422898 10423083 -178856471 + AluSg/x SINE Alu 120 305 -5 410 235 272 22 chr6 10423174 10423446 -178856108 + L1MC4a LINE L1 5508 5847 -1961 293 269 54 23 chr6 10423609 10423777 -178855777 + MLT1J2 LTR MaLR 266 396 -13 23 0 0 0 chr6 10424779 10424802 -178854752 + AT_rich Low_complexity Low_complexity 1 23 0 4325 129 15 7 chr6 10424861 10425584 -178853970 - L1MA5A LINE L1 -4 6293 5565 320 248 238 0 chr6 10426585 10426686 -178852868 + L2 LINE L2 3189 3313 0 224 310 52 69 chr6 10427268 10427384 -178852170 - MIR SINE MIR -54 208 95 197 300 17 0 chr6 10428203 10428263 -178851291 + MIR SINE MIR 30 90 -118 184 322 49 2 chr6 10428695 10428857 -178850697 - MIR SINE MIR -7 255 53 338 277 108 48 chr6 10428946 10429195 -178850359 - LTR41 LTR ERVL 0 773 510 622 253 11 11 chr6 10429640 10429818 -178849736 - LTR41 LTR ERVL -595 178 1 22 0 0 0 chr6 10430561 10430583 -178848971 + AT_rich Low_complexity Low_complexity 1 22 0 9187 93 12 17 chr6 10430805 10432833 -178846721 + L1PA8 LINE L1 4030 6044 -128 274 278 16 71 chr6 10434588 10434687 -178844867 + MIR3 SINE MIR 72 164 -44 1856 148 10 7 chr6 10434687 10434978 -178844576 - AluSx SINE Alu -20 292 1 274 278 16 71 chr6 10434978 10435004 -178844550 + MIR3 SINE MIR 164 190 -18 3847 137 96 102 chr6 10435622 10437003 -178842551 + pTR5 LTR ERV1 743 2438 0 2349 179 47 61 chr6 10437976 10438485 -178841069 - MLT2B1 LTR ERVL -2 518 17 220 273 0 30 chr6 10440269 10440335 -178839219 + MIR3 SINE MIR 113 176 -32 256 280 164 9 chr6 10440542 10440689 -178838865 - MIR SINE MIR -58 204 38 696 119 0 0 chr6 10440724 10440833 -178838721 + (TA)n Simple_repeat Simple_repeat 2 110 0 1640 167 0 11 chr6 10441485 10441754 -178837800 + AluJo SINE Alu 16 281 -31 21 0 0 0 chr6 10442479 10442500 -178837054 + AT_rich Low_complexity Low_complexity 1 21 0 388 270 217 19 chr6 10443696 10443959 -178835595 - MLT1H1 LTR MaLR 0 555 241 3084 117 68 11 chr6 10444981 10445538 -178834016 - L1MA2 LINE L1 0 6304 5716 10519 176 55 27 chr6 10445538 10447772 -178831782 - L1M1 LINE L1 -706 5599 3269 2200 106 0 0 chr6 10447772 10448056 -178831498 - AluSc SINE Alu -25 284 1 10519 176 55 27 chr6 10448056 10448478 -178831076 - L1M1 LINE L1 -3036 3269 2860 895 288 66 70 chr6 10448567 10449067 -178830487 - LTR33A LTR ERVL -3 520 23 1964 165 13 13 chr6 10449074 10449472 -178830082 + L1 LINE L1 4672 5095 -1051 228 35 0 0 chr6 10449515 10449544 -178830010 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 360 374 53 45 chr6 10449648 10450004 -178829550 + L2 LINE L2 2914 3272 0 384 192 0 26 chr6 10450405 10450483 -178829071 + MLT2D LTR ERVL 1 76 -338 1402 236 117 29 chr6 10450595 10451032 -178828522 + MLT2B1 LTR ERVL 1 485 -35 293 62 21 0 chr6 10451032 10451080 -178828474 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1402 236 117 29 chr6 10451080 10451120 -178828434 + MLT2B1 LTR ERVL 485 520 0 2099 261 67 3 chr6 10451121 10451685 -178827869 + ERVL-B1 LTR ERVL 2 601 -5163 1284 195 74 0 chr6 10451686 10451942 -178827612 + MLT1A2-int LTR MaLR 1455 1729 -6 1411 233 19 29 chr6 10451982 10452360 -178827194 + MLT1A2 LTR MaLR 1 374 0 1095 178 73 32 chr6 10452639 10452781 -178826773 - AluJo SINE Alu -30 282 124 201 39 0 0 chr6 10452781 10452807 -178826747 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1095 178 73 32 chr6 10452807 10452911 -178826643 - AluJo SINE Alu -188 124 26 330 377 24 6 chr6 10453860 10454027 -178825527 - L3 LINE CR1 -2 1575 1406 197 397 48 8 chr6 10454345 10454471 -178825083 - MIR SINE MIR -58 150 20 212 390 67 0 chr6 10454944 10455049 -178824505 - L2 LINE L2 -19 3253 3142 186 71 0 0 chr6 10455122 10455150 -178824404 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr6 10455819 10455844 -178823710 + AT_rich Low_complexity Low_complexity 1 25 0 1842 127 15 0 chr6 10455844 10456103 -178823451 - AluSg SINE Alu -45 265 3 22 80 0 0 chr6 10457106 10457156 -178822398 + AT_rich Low_complexity Low_complexity 1 50 0 214 366 0 36 chr6 10457657 10457769 -178821785 - MIR3 SINE MIR -91 117 10 3140 26 3 0 chr6 10458055 10458433 -178821121 + L1PA4 LINE L1 5769 6147 -8 22 35 0 0 chr6 10458472 10458501 -178821053 + AT_rich Low_complexity Low_complexity 1 29 0 1509 193 23 16 chr6 10459913 10460219 -178819335 - AluJb SINE Alu -4 308 1 263 309 70 39 chr6 10460963 10461193 -178818361 + L2 LINE L2 3031 3267 -46 291 308 67 0 chr6 10461578 10461682 -178817872 + MIR SINE MIR 132 242 -20 5059 176 40 18 chr6 10462021 10462869 -178816685 - L1MA9 LINE L1 0 6312 5484 2272 8 0 4 chr6 10462869 10463123 -178816431 + AluYa5 SINE Alu 56 308 -3 5059 176 40 18 chr6 10463123 10463997 -178815557 - L1MA9 LINE L1 -828 5484 4570 2616 117 0 0 chr6 10463997 10464372 -178815182 + THE1C LTR MaLR 1 375 0 9143 121 60 44 chr6 10464372 10465927 -178813627 + THE1C-int LTR MaLR 1 1580 0 2568 113 11 3 chr6 10465927 10466297 -178813257 + THE1C LTR MaLR 1 373 -2 3735 180 49 44 chr6 10466303 10467185 -178812369 - L1MA9 LINE L1 -1572 4574 3689 304 266 64 0 chr6 10470167 10470261 -178809293 - L1MC4 LINE L1 -1350 6692 6593 32 43 0 0 chr6 10470327 10470373 -178809181 + AT_rich Low_complexity Low_complexity 1 46 0 38 61 0 0 chr6 10470424 10470490 -178809064 + AT_rich Low_complexity Low_complexity 1 66 0 325 143 13 13 chr6 10470919 10470996 -178808558 + T-rich Low_complexity Low_complexity 2 78 0 181 361 0 0 chr6 10471373 10471445 -178808109 + MIR SINE MIR 53 124 -138 21 36 0 0 chr6 10471731 10471759 -178807795 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 10475194 10475224 -178804330 + AT_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr6 10475438 10475467 -178804087 + (TG)n Simple_repeat Simple_repeat 1 29 0 256 99 0 62 chr6 10476686 10476767 -178802787 + (TA)n Simple_repeat Simple_repeat 2 77 0 195 69 0 0 chr6 10476865 10476894 -178802660 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 36 40 0 0 chr6 10479300 10479350 -178800204 + AT_rich Low_complexity Low_complexity 1 50 0 187 377 14 0 chr6 10480075 10480144 -178799410 - MIR3 SINE MIR -11 197 128 2166 121 0 0 chr6 10481265 10481572 -178797982 + AluSx SINE Alu 1 307 0 29 28 0 0 chr6 10482294 10482330 -178797224 + AT_rich Low_complexity Low_complexity 1 36 0 552 246 113 0 chr6 10482588 10482730 -178796824 - MIR SINE MIR -101 161 4 209 323 50 72 chr6 10483062 10483381 -178796173 + L2 LINE L2 2423 2734 -580 1445 144 44 31 chr6 10483482 10483801 -178795753 + MER33 DNA MER1_type 2 324 0 381 170 69 202 chr6 10484057 10484245 -178795309 - MIR SINE MIR -21 241 79 326 287 21 21 chr6 10484441 10484535 -178795019 + L2 LINE L2 3171 3264 -8 195 100 0 0 chr6 10484610 10484640 -178794914 + (TAA)n Simple_repeat Simple_repeat 3 32 0 233 326 156 22 chr6 10485512 10485782 -178793772 - L2 LINE L2 0 3313 3008 2215 94 0 3 chr6 10485848 10486161 -178793393 - AluY SINE Alu 0 312 1 351 250 121 36 chr6 10486398 10486538 -178793016 - MIR SINE MIR 0 262 111 444 296 56 52 chr6 10488627 10488840 -178790714 + MIR SINE MIR 9 222 -40 2344 78 0 0 chr6 10488958 10489261 -178790293 - AluSg SINE Alu 0 303 1 265 263 114 0 chr6 10489441 10489555 -178789999 - LTR50 LTR ERVL -9 786 660 180 176 0 0 chr6 10489625 10489659 -178789895 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 306 244 194 50 chr6 10489710 10489870 -178789684 - LTR50 LTR ERVL -132 663 481 * 466 223 59 94 chr6 10489865 10490067 -178789487 - LTR50 LTR ERVL -462 333 139 1761 192 39 0 chr6 10490649 10490983 -178788571 + MER7A DNA MER2_type 1 345 -1 270 245 43 101 chr6 10491084 10491223 -178788331 + LTR67 LTR ERVL 283 413 -144 16796 134 14 13 chr6 10491877 10493408 -178786146 - Tigger2 DNA MER2_type -38 2680 1142 2126 135 0 0 chr6 10493408 10493712 -178785842 - AluSg SINE Alu -6 304 1 16796 134 14 13 chr6 10493712 10494856 -178784698 - Tigger2 DNA MER2_type -1576 1142 1 251 146 146 0 chr6 10494880 10494928 -178784626 + MLT1J LTR MaLR 136 190 -321 21 0 0 0 chr6 10495482 10495503 -178784051 + AT_rich Low_complexity Low_complexity 1 21 0 363 174 29 0 chr6 10496341 10496410 -178783144 + MER116 DNA Mariner 8 78 -2 253 361 12 36 chr6 10496464 10496630 -178782924 - MIR SINE MIR -51 211 50 646 224 0 28 chr6 10497011 10497154 -178782400 + MLT1E1 LTR MaLR 2 140 -514 1129 190 18 18 chr6 10497207 10497433 -178782121 + MLT1E1 LTR MaLR 428 653 -1 332 326 76 15 chr6 10497820 10497958 -178781596 - MIR SINE MIR -62 146 7 26 50 0 0 chr6 10498510 10498550 -178781004 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr6 10499186 10499215 -178780339 + AT_rich Low_complexity Low_complexity 1 29 0 767 365 159 14 chr6 10499436 10500348 -178779206 + L2 LINE L2 1854 2897 -417 407 323 78 91 chr6 10500378 10500685 -178778869 + L2 LINE L2 2968 3270 -2 1463 199 78 65 chr6 10501731 10502178 -178777376 - LTR40b LTR ERVL 0 462 10 1347 14 0 0 chr6 10503177 10503325 -178776229 - AluY SINE Alu -6 305 158 860 313 148 49 chr6 10503510 10505160 -178774394 + L2 LINE L2 1493 3311 -2 236 238 12 25 chr6 10505203 10505283 -178774271 + GA-rich Low_complexity Low_complexity 4 82 0 182 105 26 0 chr6 10505301 10505339 -178774215 + A-rich Low_complexity Low_complexity 2 40 0 222 276 226 50 chr6 10505339 10505520 -178774034 - MIR SINE MIR -10 252 40 2117 116 3 0 chr6 10505671 10505977 -178773577 + AluSx SINE Alu 1 307 0 18810 59 7 16 chr6 10506011 10509043 -178770511 - L1PA6 LINE L1 -6 6148 3140 2766 16 0 0 chr6 10509043 10509347 -178770207 - AluYa5 SINE Alu -7 304 1 18810 59 7 16 chr6 10509347 10509623 -178769931 - L1PA6 LINE L1 -3014 3140 2863 5355 49 3 0 chr6 10509623 10510272 -178769282 + L1PA5 LINE L1 5493 6146 -8 18815 110 22 14 chr6 10510282 10513129 -178766425 - L1PA6 LINE L1 -3267 2879 10 274 349 18 66 chr6 10513562 10513728 -178765826 - MIR SINE MIR -48 214 57 409 304 77 17 chr6 10513941 10514122 -178765432 - MIR SINE MIR -50 212 21 22 0 0 0 chr6 10514955 10514977 -178764577 + AT_rich Low_complexity Low_complexity 1 22 0 1287 227 36 48 chr6 10516495 10516908 -178762646 - MLT2C1 LTR ERVL 0 464 1 6119 209 39 12 chr6 10516909 10518373 -178761181 - ERVL-C1 LTR ERVL -9 5755 4221 1539 219 25 6 chr6 10518371 10518696 -178760858 - ERVL-C1 LTR ERVL -1903 3861 3531 * 1563 225 72 29 chr6 10520011 10520527 -178759027 - L1M4 LINE L1 -1200 4946 4409 3289 258 56 20 chr6 10520561 10521830 -178757724 - L1M4 LINE L1 -2110 4036 2723 21 0 0 0 chr6 10522356 10522377 -178757177 + AT_rich Low_complexity Low_complexity 1 21 0 261 157 14 29 chr6 10522666 10522736 -178756818 + CT-rich Low_complexity Low_complexity 4 72 0 231 309 0 0 chr6 10522740 10522795 -178756759 + polypyrimidine Low_complexity Low_complexity 1 55 0 24 0 0 0 chr6 10523533 10523557 -178755997 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 10524927 10524956 -178754598 + AT_rich Low_complexity Low_complexity 1 29 0 273 97 113 0 chr6 10524956 10525018 -178754536 - L1MA7 LINE L1 -5 6286 6218 21 36 0 0 chr6 10526100 10526128 -178753426 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr6 10526580 10526605 -178752949 + (TG)n Simple_repeat Simple_repeat 2 26 0 728 263 0 0 chr6 10527002 10527162 -178752392 + MER5A DNA MER1_type 30 189 0 2134 121 0 0 chr6 10527917 10528199 -178751355 + AluSg SINE Alu 3 284 -26 436 287 64 5 chr6 10528415 10528617 -178750937 - L1ME4a LINE L1 -195 5926 5713 239 412 7 7 chr6 10528776 10528912 -178750642 - L3 LINE CR1 -766 811 676 2095 113 7 3 chr6 10529568 10529886 -178749668 - AluSq SINE Alu 0 319 1 1351 162 28 1 chr6 10530989 10531253 -178748301 - MLT2C2 LTR ERVL -140 274 1 1132 294 58 5 chr6 10531255 10531684 -178747870 - L1ME4a LINE L1 -2038 5770 5319 295 298 53 58 chr6 10531856 10532044 -178747510 - L1ME3A LINE L1 -8 6162 5976 33 25 0 0 chr6 10532087 10532127 -178747427 + AT_rich Low_complexity Low_complexity 1 40 0 733 252 97 63 chr6 10532139 10532209 -178747345 - L1ME3A LINE L1 -242 5928 5862 2521 54 0 0 chr6 10532209 10532503 -178747051 + AluY SINE Alu 1 294 -17 733 252 97 63 chr6 10532503 10532813 -178746741 - L1ME3A LINE L1 -308 5862 5535 21 57 0 0 chr6 10532931 10532966 -178746588 + AT_rich Low_complexity Low_complexity 1 35 0 950 248 42 30 chr6 10532981 10533385 -178746169 - L1ME3A LINE L1 -3043 3103 2695 1057 254 93 97 chr6 10533442 10533936 -178745618 + MLT1E LTR MaLR 1 544 -49 253 345 9 62 chr6 10537695 10537808 -178741746 - MIR SINE MIR -127 135 29 735 248 56 25 chr6 10538239 10538437 -178741117 + L2 LINE L2 2581 2784 -530 350 260 0 21 chr6 10538438 10538534 -178741020 - LTR33 LTR ERVL -77 444 351 859 296 15 11 chr6 10538540 10538800 -178740754 - LTR40a LTR ERVL -154 365 105 368 315 78 31 chr6 10538989 10539310 -178740244 - L1ME3A LINE L1 -3497 2649 2314 455 264 0 0 chr6 10539316 10539426 -178740128 - LTR33 LTR ERVL -2 519 410 1563 217 126 21 chr6 10539983 10540356 -178739198 - MLT1E2 LTR MaLR 0 626 215 835 232 0 6 chr6 10540671 10540839 -178738715 - FAM SINE Alu -8 167 1 765 208 7 0 chr6 10540851 10540995 -178738559 - MLT1E2 LTR MaLR -421 203 59 1109 215 55 42 chr6 10541095 10541402 -178738152 + MLT2C1 LTR ERVL 3 313 -84 3547 114 12 4 chr6 10541427 10541934 -178737620 - MER9 LTR ERVK 0 511 1 515 154 8 0 chr6 10541936 10542053 -178737501 + (TCTA)n Simple_repeat Simple_repeat 3 120 0 267 54 0 0 chr6 10542110 10542147 -178737407 + (CA)n Simple_repeat Simple_repeat 2 38 0 748 240 30 123 chr6 10542185 10542552 -178737002 - MLT1E2-int LTR MaLR -65 1306 974 1681 188 21 40 chr6 10544319 10544691 -178734863 + MLT1A1 LTR MaLR 1 365 0 2144 112 0 3 chr6 10544890 10545186 -178734368 + AluSg1 SINE Alu 1 295 -14 1318 249 95 49 chr6 10545347 10545545 -178734009 - MER21B LTR ERV1 -134 729 541 2696 120 31 12 chr6 10545545 10545963 -178733591 + MSTA LTR MaLR 1 426 -2 1318 249 95 49 chr6 10545963 10546291 -178733263 - MER21B LTR ERV1 -322 541 179 3023 80 5 10 chr6 10546404 10546792 -178732762 + MLT2A1 LTR ERVL 1 389 -55 189 0 0 0 chr6 10546792 10546813 -178732741 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 225 0 0 0 chr6 10546812 10546837 -178732717 + (GA)n Simple_repeat Simple_repeat 2 26 0 3023 80 5 10 chr6 10546813 10546850 -178732704 + MLT2A1 LTR ERVL 389 400 -44 382 122 0 24 chr6 10546855 10546937 -178732617 + (TA)n Simple_repeat Simple_repeat 2 81 0 378 109 0 0 chr6 10546946 10547001 -178732553 + MLT2A1 LTR ERVL 390 444 0 22 0 0 0 chr6 10548091 10548113 -178731441 + AT_rich Low_complexity Low_complexity 1 22 0 597 301 121 42 chr6 10548611 10549182 -178730372 + ERVL LTR ERVL 7 622 -4374 327 381 52 8 chr6 10549800 10550049 -178729505 + ERVL LTR ERVL 1422 1681 -4083 550 315 26 30 chr6 10550257 10550489 -178729065 + ERVL LTR ERVL 2759 2989 -2007 300 319 69 13 chr6 10550539 10550742 -178728812 + ERVL LTR ERVL 3293 3508 -1977 1887 148 7 0 chr6 10550832 10551109 -178728445 - AluSx SINE Alu -23 289 11 495 337 49 11 chr6 10551222 10551489 -178728065 + ERVL LTR ERVL 3680 3956 -1698 392 346 82 34 chr6 10551588 10552415 -178727139 + ERVL LTR ERVL 4143 5049 -644 1367 129 139 102 chr6 10552819 10553319 -178726235 - LTR18B LTR ERVL 0 614 2 1805 209 90 2 chr6 10553557 10553958 -178725596 - LTR32 LTR ERVL 0 471 36 2257 189 58 42 chr6 10554011 10554560 -178724994 - MER74A LTR ERVL 0 558 1 230 312 106 35 chr6 10556373 10556543 -178723011 - MIR3 SINE MIR -23 185 4 405 261 119 45 chr6 10557037 10557213 -178722341 + MIR SINE MIR 20 208 -54 1101 193 103 29 chr6 10557258 10557637 -178721917 - L1MC5 LINE L1 -32 7929 7523 325 196 10 21 chr6 10558409 10558506 -178721048 + (CATATA)n Simple_repeat Simple_repeat 2 97 0 207 330 112 41 chr6 10559171 10559368 -178720186 + L2 LINE L2 2362 2572 -742 2115 253 34 16 chr6 10559372 10560499 -178719055 - L1ME1 LINE L1 -198 6763 5620 1153 270 64 13 chr6 10560519 10560975 -178718579 - L1ME1 LINE L1 -1743 5198 4720 2294 270 73 47 chr6 10560981 10563663 -178715891 - L1ME1 LINE L1 -2756 4185 1246 554 221 6 22 chr6 10563674 10563855 -178715699 + CT-rich Low_complexity Low_complexity 1 178 0 513 159 53 0 chr6 10563869 10564020 -178715534 + CT-rich Low_complexity Low_complexity 2 160 0 315 345 176 14 chr6 10564090 10564374 -178715180 - L1ME1 LINE L1 -5226 1197 868 702 293 103 36 chr6 10564572 10565033 -178714521 - L1ME1 LINE L1 -5842 581 79 1371 163 132 0 chr6 10565033 10565186 -178714368 - AluJo SINE Alu -21 291 160 201 39 0 0 chr6 10565186 10565212 -178714342 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 10565212 10565315 -178714239 - AluJo SINE Alu -152 160 1 702 293 103 36 chr6 10565315 10565376 -178714178 - L1ME1 LINE L1 -6344 79 24 6407 45 13 5 chr6 10565579 10566370 -178713184 - L1PA7 LINE L1 -12 6142 5346 249 108 0 0 chr6 10567064 10567101 -178712453 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 211 308 103 17 chr6 10567905 10568022 -178711532 - MIR3 SINE MIR -9 199 73 419 280 84 109 chr6 10568077 10569244 -178710310 + L1MEc LINE L1 36 1173 -5223 295 204 0 32 chr6 10569457 10569550 -178710004 + L1MEc LINE L1 2179 2268 -4128 408 246 22 0 chr6 10569552 10569690 -178709864 + L1MEc LINE L1 3878 4018 -2197 954 241 72 4 chr6 10570203 10570439 -178709115 + HERVL40 LTR ERVL 5279 5530 0 1007 285 51 42 chr6 10570439 10570793 -178708761 + LTR40b LTR ERVL 1 357 -105 323 141 16 0 chr6 10570793 10570857 -178708697 + CT-rich Low_complexity Low_complexity 1 65 0 279 133 0 0 chr6 10570852 10570897 -178708657 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 * 504 231 9 36 chr6 10570900 10571101 -178708453 - L1MEc LINE L1 -4509 1938 1734 387 161 0 0 chr6 10571109 10571176 -178708378 + LTR40b LTR ERVL 404 462 0 1314 228 84 37 chr6 10571187 10571836 -178707718 + L1MC4a LINE L1 6187 6823 -1033 346 201 112 45 chr6 10571916 10572050 -178707504 - L1MEc LINE L1 -3239 2976 2834 382 175 50 0 chr6 10572059 10572139 -178707415 - L1MEc LINE L1 -4320 2076 1993 1200 297 67 42 chr6 10572249 10572643 -178706911 - L1MEc LINE L1 -4578 1818 1435 2252 119 0 0 chr6 10572643 10572955 -178706599 - AluSq SINE Alu -1 312 1 1200 297 67 42 chr6 10572955 10573533 -178706021 - L1MEc LINE L1 -4961 1435 822 422 55 0 0 chr6 10573533 10573588 -178705966 - MLT2A1 LTR ERVL 0 453 399 190 54 27 27 chr6 10573633 10573670 -178705884 + (TA)n Simple_repeat Simple_repeat 2 38 0 271 83 83 0 chr6 10573690 10573738 -178705816 - HERVL LTR ERVL -144 5510 5459 2679 88 39 5 chr6 10573768 10574152 -178705402 - MLT2A1 LTR ERVL -44 400 4 41738 71 22 24 chr6 10574155 10576689 -178702865 - HERVL-A1 LTR ERVL 0 5654 3119 181 258 56 45 chr6 10576689 10576778 -178702776 + L2 LINE L2 2605 2694 -620 41738 71 22 24 chr6 10576778 10579814 -178699740 - HERVL-A1 LTR ERVL -2535 3119 2 334 94 38 0 chr6 10579815 10579868 -178699686 - MLT2A1 LTR ERVL 0 453 399 247 139 76 25 chr6 10579868 10579947 -178699607 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 389 208 0 6 chr6 10579960 10580277 -178699277 + (TA)n Simple_repeat Simple_repeat 1 315 0 2822 79 26 5 chr6 10580278 10580669 -178698885 - MLT2A1 LTR ERVL -45 399 1 1365 274 38 84 chr6 10580670 10581490 -178698064 - L1MEc LINE L1 -5571 825 44 326 122 71 30 chr6 10581498 10581598 -178697956 + L1M4 LINE L1 5555 5660 -514 * 1052 220 11 51 chr6 10581596 10581847 -178697707 + L1MC4 LINE L1 6766 7007 -1035 2074 103 7 13 chr6 10581847 10582147 -178697407 + AluSg1 SINE Alu 1 298 -11 1052 220 11 51 chr6 10582147 10582168 -178697386 + L1MC4 LINE L1 7007 7027 -1015 542 243 80 26 chr6 10582173 10582355 -178697199 + MER63 DNA MER1_type 4 1673 -15 1363 237 130 75 chr6 10582367 10582806 -178696748 + L1MC4 LINE L1 7022 7522 -520 1874 162 52 16 chr6 10582806 10583189 -178696365 - MLT2C1 LTR ERVL 0 397 1 1363 237 130 75 chr6 10583189 10583518 -178696036 + L1MC4 LINE L1 7522 7832 -210 1291 199 59 97 chr6 10583580 10584002 -178695552 + MLT1D LTR MaLR 48 453 -52 26 0 0 0 chr6 10584026 10584052 -178695502 + AT_rich Low_complexity Low_complexity 1 26 0 1244 188 35 8 chr6 10584052 10584307 -178695247 - L1PB4 LINE L1 -14 6142 5881 998 168 7 0 chr6 10585210 10585365 -178694189 + AluSg/x SINE Alu 136 291 -21 23 0 0 0 chr6 10585381 10585404 -178694150 + AT_rich Low_complexity Low_complexity 1 23 0 314 369 9 9 chr6 10585404 10585515 -178694039 - MIR SINE MIR -148 114 4 309 388 48 0 chr6 10586322 10586517 -178693037 - MIR SINE MIR -33 229 26 416 274 18 26 chr6 10588212 10588325 -178691229 - L2 LINE L2 0 3313 3202 355 321 65 10 chr6 10588490 10588688 -178690866 + MIR3 SINE MIR 45 260 -2 195 320 58 86 chr6 10588979 10589270 -178690284 + L2 LINE L2 2221 2503 -811 216 0 0 0 chr6 10589404 10589428 -178690126 + (A)n Simple_repeat Simple_repeat 1 24 0 522 0 0 0 chr6 10589428 10589486 -178690068 + (TA)n Simple_repeat Simple_repeat 2 59 0 1810 175 96 13 chr6 10589486 10589881 -178689673 + MLT1C LTR MaLR 38 465 -2 1561 221 37 68 chr6 10590648 10591165 -178688389 - MLT1D LTR MaLR 0 505 5 228 314 89 16 chr6 10591399 10591523 -178688031 + MIR3 SINE MIR 66 198 -10 180 0 0 0 chr6 10593309 10593329 -178686225 + (T)n Simple_repeat Simple_repeat 1 20 0 263 206 32 32 chr6 10594433 10594496 -178685058 - MIR SINE MIR -90 172 110 290 348 45 29 chr6 10595636 10595857 -178683697 + MIR3 SINE MIR 15 248 -14 183 80 0 0 chr6 10596608 10596633 -178682921 + (GAGTG)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chr6 10597474 10597498 -178682056 + AT_rich Low_complexity Low_complexity 1 24 0 210 118 0 0 chr6 10598676 10598710 -178680844 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 213 197 0 0 chr6 10600167 10600228 -178679326 + (CA)n Simple_repeat Simple_repeat 1 61 0 286 89 18 18 chr6 10600282 10600338 -178679216 + (TA)n Simple_repeat Simple_repeat 2 57 0 1234 249 81 23 chr6 10601546 10601910 -178677644 + MLT1E LTR MaLR 246 593 0 330 143 0 63 chr6 10601911 10601974 -178677580 + LTR40b LTR ERVL 404 462 0 1493 256 7 44 chr6 10601987 10602393 -178677161 + HERVL40 LTR ERVL 17 407 -5123 3351 300 35 11 chr6 10602436 10603415 -178676139 + HERVL40 LTR ERVL 2882 3883 -1647 2003 216 78 58 chr6 10603415 10604162 -178675392 + L1M4b LINE L1 1024 1781 -5074 1933 114 0 22 chr6 10604162 10604434 -178675120 + AluSx SINE Alu 1 266 -46 522 84 0 24 chr6 10604434 10604517 -178675037 + Alu SINE Alu 227 307 -2 1433 281 76 38 chr6 10604520 10605241 -178674313 + L1M4b LINE L1 1789 2687 -4451 4693 239 38 49 chr6 10605271 10607161 -178672393 + L1MEc LINE L1 1734 3555 -2660 1704 173 20 48 chr6 10607161 10607519 -178672035 - MER7A DNA MER2_type 0 346 1 4693 239 38 49 chr6 10607519 10607644 -178671910 + L1MEc LINE L1 3555 3680 -2535 5090 45 6 0 chr6 10607654 10608279 -178671275 + L1P LINE L1 8 636 -5510 5568 39 1 0 chr6 10608279 10608948 -178670606 + L1PA4 LINE L1 5483 6152 -3 3316 217 26 22 chr6 10608953 10609719 -178669835 + L1MEc LINE L1 3677 4448 -1767 2145 124 0 0 chr6 10609719 10610018 -178669536 + AluSx SINE Alu 6 304 -8 3316 217 26 22 chr6 10610018 10610100 -178669454 + L1MEc LINE L1 4448 4528 -1687 2282 87 3 0 chr6 10610110 10610410 -178669144 + AluY SINE Alu 1 301 -10 322 373 16 5 chr6 10610410 10610603 -178668951 + MER89-int LTR ERV1 6291 6485 -316 * 1343 218 26 0 chr6 10610494 10610827 -178668727 + HERVL40 LTR ERVL 2783 5522 -8 1558 226 174 16 chr6 10610859 10611296 -178668258 + LTR40a LTR ERVL 13 518 -1 378 0 0 0 chr6 10611715 10611757 -178667797 + (CA)n Simple_repeat Simple_repeat 2 43 0 3218 62 28 9 chr6 10611959 10612413 -178667141 + L1PA6 LINE L1 5708 6169 0 1273 97 0 0 chr6 10612517 10612682 -178666872 + AluSg/x SINE Alu 132 296 -16 2074 95 70 0 chr6 10616076 10616361 -178663193 - AluSq SINE Alu -8 305 1 28 29 0 0 chr6 10616509 10616544 -178663010 + AT_rich Low_complexity Low_complexity 1 35 0 4096 133 13 4 chr6 10616691 10617368 -178662186 + L1MC1 LINE L1 5650 6332 -1 643 278 98 31 chr6 10617929 10618153 -178661401 + L1ME4a LINE L1 5159 5367 -795 1825 155 50 0 chr6 10618153 10618431 -178661123 + AluSx SINE Alu 1 292 -20 643 278 98 31 chr6 10618431 10618600 -178660954 + L1ME4a LINE L1 5367 5523 -639 198 0 0 0 chr6 10618600 10618622 -178660932 + (TA)n Simple_repeat Simple_repeat 2 23 0 643 278 98 31 chr6 10618622 10618817 -178660737 + L1ME4a LINE L1 5523 5799 -363 1676 168 0 0 chr6 10619333 10619607 -178659947 - MLT1B LTR MaLR 0 390 117 613 110 64 0 chr6 10619637 10619746 -178659808 - L1MA1 LINE L1 0 6302 6187 225 0 0 0 chr6 10619840 10619865 -178659689 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 727 54 0 54 chr6 10620151 10620185 -178659369 - MLT1B LTR MaLR -284 106 72 1894 144 32 53 chr6 10620185 10620559 -178658995 + MER47A DNA MER2_type 1 366 0 727 54 0 54 chr6 10620559 10620636 -178658918 - MLT1B LTR MaLR -318 72 1 225 0 0 0 chr6 10621242 10621267 -178658287 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 261 248 17 60 chr6 10621360 10621477 -178658077 + HAL1b LINE L1 439 550 -798 923 271 26 0 chr6 10622810 10623039 -178656515 - MIR SINE MIR -1 261 27 277 276 51 31 chr6 10623038 10623136 -178656418 + MER5A DNA MER1_type 79 178 -11 * 414 229 93 7 chr6 10623259 10623399 -178656155 + L1ME4a LINE L1 5956 6107 -14 946 218 56 23 chr6 10626744 10626960 -178652594 - MER58A DNA MER1_type 0 224 2 878 275 83 81 chr6 10627864 10628210 -178651344 - L3 LINE CR1 -2 1575 1226 1349 209 92 9 chr6 10628210 10628525 -178651029 - MER58B DNA MER1_type 0 341 1 878 275 83 81 chr6 10628525 10628611 -178650943 - L3 LINE CR1 -351 1226 1142 2259 107 0 10 chr6 10628634 10628943 -178650611 - AluSx SINE Alu 0 312 7 288 253 41 175 chr6 10628987 10629279 -178650275 - MIR SINE MIR -4 258 6 * 391 351 68 16 chr6 10629252 10629500 -178650054 - L3 LINE CR1 -1139 438 178 2410 99 0 0 chr6 10629602 10629944 -178649610 + AluSx SINE Alu 1 342 0 314 282 14 28 chr6 10629944 10630086 -178649468 + MARNA DNA Mariner 427 566 -20 221 0 0 33 chr6 10630128 10630158 -178649396 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3245 102 15 2 chr6 10630785 10631247 -178648307 - L1PA11 LINE L1 -4 6170 5703 2261 108 0 23 chr6 10631266 10631572 -178647982 - AluSx SINE Alu -13 299 1 478 263 7 29 chr6 10631730 10631867 -178647687 + L2 LINE L2 3168 3301 -12 273 98 0 0 chr6 10631869 10631910 -178647644 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 551 198 150 55 chr6 10632033 10632306 -178647248 + L1MC5 LINE L1 7609 7907 -54 346 233 148 74 chr6 10632431 10632620 -178646934 - L2 LINE L2 -2 3311 3109 288 200 0 0 chr6 10632672 10632732 -178646822 + (TG)n Simple_repeat Simple_repeat 1 60 0 199 283 0 0 chr6 10633045 10633091 -178646463 + L2 LINE L2 3223 3268 -4 1196 171 87 95 chr6 10634249 10634617 -178644937 - MLT1A2 LTR MaLR -4 370 6 1131 277 84 41 chr6 10634723 10635370 -178644184 - L2 LINE L2 0 3313 2636 301 314 66 93 chr6 10635503 10635945 -178643609 - L2 LINE L2 -7 3265 2836 227 119 0 24 chr6 10636218 10636260 -178643294 - MLT1A2 LTR MaLR -301 73 33 28 0 0 0 chr6 10638981 10639009 -178640545 + AT_rich Low_complexity Low_complexity 1 28 0 2451 118 58 0 chr6 10640072 10640453 -178639101 - MER57A LTR ERV1 0 403 1 345 306 55 73 chr6 10640898 10641225 -178638329 + L2 LINE L2 2931 3251 -62 216 207 0 35 chr6 10641641 10641699 -178637855 + GA-rich Low_complexity Low_complexity 4 59 0 864 198 6 6 chr6 10642041 10642236 -178637318 - AluJ SINE Alu 0 327 133 207 0 0 0 chr6 10642236 10642259 -178637295 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1793 154 25 0 chr6 10642262 10642416 -178637138 - AluSx SINE Alu -25 287 121 393 39 0 0 chr6 10642416 10642467 -178637087 + (TG)n Simple_repeat Simple_repeat 2 52 0 1793 154 25 0 chr6 10642467 10642592 -178636962 - AluSx SINE Alu -191 121 1 890 112 0 30 chr6 10642625 10642759 -178636795 - AluJ SINE Alu -178 134 5 1340 198 0 71 chr6 10643462 10643785 -178635769 + AluJo SINE Alu 3 302 -10 252 228 39 78 chr6 10643931 10644137 -178635417 + L1ME4a LINE L1 5765 5962 -159 201 195 0 0 chr6 10644321 10644362 -178635192 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1406 214 159 67 chr6 10644385 10644613 -178634941 + MLT1E2 LTR MaLR 2 207 -419 2176 124 18 47 chr6 10644613 10644999 -178634555 - THE1C LTR MaLR 0 375 1 1406 214 159 67 chr6 10644999 10645341 -178634213 + MLT1E2 LTR MaLR 207 625 -1 3854 129 177 101 chr6 10645600 10647043 -178632511 + pTR5 LTR ERV1 762 2437 -1 263 264 100 9 chr6 10648255 10648365 -178631189 - MIR SINE MIR -20 242 123 242 318 23 23 chr6 10648538 10648626 -178630928 - MIR SINE MIR -144 118 31 1952 132 0 7 chr6 10648655 10648936 -178630618 + AluSg SINE Alu 24 302 -8 528 222 68 23 chr6 10648972 10649148 -178630406 + L1MC5 LINE L1 7741 7924 -37 378 0 0 0 chr6 10650004 10650046 -178629508 + (CA)n Simple_repeat Simple_repeat 2 43 0 295 215 117 16 chr6 10650062 10650195 -178629359 + MLT1L LTR MaLR 257 458 -124 196 115 0 0 chr6 10650842 10650868 -178628686 - L2 LINE L2 -19 3253 3228 261 370 24 0 chr6 10651299 10651426 -178628128 - MIR3 SINE MIR -7 201 72 28 0 0 0 chr6 10652626 10652654 -178626900 + AT_rich Low_complexity Low_complexity 1 28 0 285 204 0 0 chr6 10653028 10653082 -178626472 - L2 LINE L2 0 3272 3219 700 257 50 37 chr6 10653124 10653342 -178626212 - MIR SINE MIR -19 243 23 1561 193 10 13 chr6 10653538 10653849 -178625705 + AluJo SINE Alu 1 310 -2 224 295 0 0 chr6 10653852 10653913 -178625641 + A-rich Low_complexity Low_complexity 2 62 0 2172 105 7 7 chr6 10655158 10655463 -178624091 + AluSx SINE Alu 3 307 -5 189 0 0 0 chr6 10655564 10655585 -178623969 + (A)n Simple_repeat Simple_repeat 1 21 0 934 254 67 25 chr6 10655599 10655914 -178623640 - MLT1K LTR MaLR -69 519 192 2101 134 33 3 chr6 10655974 10656333 -178623221 - MLT1B LTR MaLR 0 390 21 326 274 32 8 chr6 10656689 10656813 -178622741 + MER103 DNA DNA 19 145 -21 2105 161 11 14 chr6 10656974 10657340 -178622214 + MLT1A1 LTR MaLR 1 365 0 449 213 11 0 chr6 10659190 10659284 -178620270 - MIR3 SINE MIR -13 195 101 181 324 82 82 chr6 10659816 10660526 -178619028 + L2 LINE L2 2246 2955 -359 390 243 23 57 chr6 10660790 10660967 -178618587 + MER104 DNA Tc2 7 177 -3 3846 61 29 2 chr6 10660967 10661477 -178618077 + L1PA8 LINE L1 5640 6163 -9 807 81 0 16 chr6 10661488 10661611 -178617943 + L1PA8 LINE L1 6052 6172 0 235 221 29 44 chr6 10662133 10662201 -178617353 - MIR SINE MIR -7 255 189 1527 196 101 16 chr6 10662219 10662596 -178616958 + LTR52 LTR ERVL 1 409 -12 276 269 0 13 chr6 10662727 10662805 -178616749 + L2 LINE L2 2599 2675 -639 1323 253 73 22 chr6 10664073 10664484 -178615070 - MER70B LTR ERVL -146 432 1 207 0 0 0 chr6 10666154 10666177 -178613377 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1982 231 47 32 chr6 10667019 10667612 -178611942 + Charlie1a DNA MER1_type 27 628 -827 204 173 19 19 chr6 10668241 10668293 -178611261 + T-rich Low_complexity Low_complexity 2 53 0 470 153 191 0 chr6 10668447 10668604 -178610950 - MER33 DNA MER1_type -21 303 117 1168 216 73 28 chr6 10668604 10668962 -178610592 - MLT1A2 LTR MaLR 0 390 1 658 183 0 15 chr6 10668962 10669078 -178610476 - MER33 DNA MER1_type -205 119 6 713 283 212 12 chr6 10670163 10670644 -178608910 + MLT1K LTR MaLR 10 586 -2 202 288 152 66 chr6 10671008 10671206 -178608348 + L2 LINE L2 2573 2787 -527 2146 127 0 34 chr6 10671401 10671725 -178607829 - AluSp SINE Alu 0 313 1 2847 22 0 0 chr6 10673241 10673559 -178605995 - AluYb8 SINE Alu 0 318 1 2130 101 57 0 chr6 10673805 10674101 -178605453 + AluSq SINE Alu 1 313 0 2932 95 5 16 chr6 10674536 10674967 -178604587 + L1PA13 LINE L1 5736 6161 -2 2395 85 0 3 chr6 10675163 10675470 -178604084 - AluY SINE Alu -5 306 1 1451 151 57 72 chr6 10675472 10675877 -178603677 - Charlie1 DNA MER1_type -20 2741 2343 1803 144 26 32 chr6 10676196 10676536 -178603018 + LTR32 LTR ERVL 15 352 -119 248 29 29 0 chr6 10676920 10676955 -178602599 + LTR32 LTR ERVL 317 352 -119 758 173 26 32 chr6 10677045 10677201 -178602353 + LTR32 LTR ERVL 317 471 0 2199 176 84 18 chr6 10677206 10677640 -178601914 + MLT2B1 LTR ERVL 1 472 -48 402 21 0 0 chr6 10677640 10677687 -178601867 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2199 176 84 18 chr6 10677687 10677740 -178601814 + MLT2B1 LTR ERVL 472 520 0 291 235 206 47 chr6 10678405 10678575 -178600979 + MLT1K LTR MaLR 388 584 -4 521 222 137 0 chr6 10679468 10679621 -178599933 - MER69A DNA AcHobo -3 174 1 187 360 88 20 chr6 10679840 10679987 -178599567 - MIR3 SINE MIR -7 201 45 298 305 26 71 chr6 10680174 10680328 -178599226 + MIR SINE MIR 52 198 -64 2569 102 11 3 chr6 10680880 10681241 -178598313 + THE1B LTR MaLR 1 364 0 346 276 40 51 chr6 10681362 10681713 -178597841 + HAL1 LINE L1 835 1181 -1326 1929 144 46 0 chr6 10681833 10682118 -178597436 + AluJo SINE Alu 1 298 -14 2096 155 46 46 chr6 10682234 10682666 -178596888 - Tigger2a DNA MER2_type -2 432 1 502 301 110 29 chr6 10683158 10683392 -178596162 - MIR SINE MIR -11 251 3 392 252 63 16 chr6 10683418 10683545 -178596009 - MIR SINE MIR -46 216 84 2422 77 0 3 chr6 10684837 10685134 -178594420 + AluY SINE Alu 1 296 -15 21 0 0 0 chr6 10686363 10686384 -178593170 + AT_rich Low_complexity Low_complexity 1 21 0 740 237 49 17 chr6 10686672 10686916 -178592638 - MIR SINE MIR 0 262 20 212 133 44 0 chr6 10687341 10687386 -178592168 + T-rich Low_complexity Low_complexity 6 52 0 3234 76 40 0 chr6 10687386 10687836 -178591718 - L1PB1 LINE L1 0 6151 5684 228 111 0 0 chr6 10687851 10687887 -178591667 + (T)n Simple_repeat Simple_repeat 1 36 0 235 275 210 6 chr6 10688786 10689139 -178590415 + L1ME4a LINE L1 5696 6120 -1 364 179 439 0 chr6 10689898 10690021 -178589533 - MER5B DNA MER1_type 0 178 2 291 54 0 0 chr6 10691896 10691933 -178587621 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 286 0 77 chr6 10693377 10693468 -178586086 - L2 LINE L2 -5 3267 3184 3371 102 18 75 chr6 10694010 10694568 -178584986 - MER1A DNA MER1_type 0 527 2 198 248 70 85 chr6 10695391 10695520 -178584034 + MER5A DNA MER1_type 36 162 -27 180 77 0 0 chr6 10696204 10696230 -178583324 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 944 210 0 6 chr6 10698609 10698776 -178580778 + FRAM SINE Alu 1 166 0 1991 310 101 1 chr6 10699131 10700182 -178579372 - L2 LINE L2 0 3313 2155 415 205 24 0 chr6 10700195 10700349 -178579205 + AluJ/FRAM SINE Alu 226 381 0 813 168 17 11 chr6 10700359 10700538 -178579016 + GA-rich Low_complexity Low_complexity 1 180 0 183 312 165 0 chr6 10700682 10700791 -178578763 - L2 LINE L2 -1185 2129 2003 1665 158 45 27 chr6 10701008 10701300 -178578254 + AluJo SINE Alu 1 297 -15 625 271 70 70 chr6 10701301 10702279 -178577275 + L1MEd LINE L1 567 1581 -4729 8339 29 1 0 chr6 10702580 10704342 -178575212 + L1PA3 LINE L1 4392 6154 -1 5422 131 31 5 chr6 10704665 10705820 -178573734 + L1PB2 LINE L1 4964 6148 -3 2141 116 27 0 chr6 10705845 10706139 -178573415 + AluSx SINE Alu 1 302 -10 1481 276 90 35 chr6 10706145 10707726 -178571828 + L1MEd LINE L1 2228 3895 -2234 1433 195 0 0 chr6 10707833 10708079 -178571475 - AluJo SINE Alu -66 246 1 22 35 0 0 chr6 10708342 10708371 -178571183 + AT_rich Low_complexity Low_complexity 1 29 0 243 347 81 0 chr6 10708461 10708585 -178570969 - L2 LINE L2 -2417 897 764 189 0 0 0 chr6 10709889 10709910 -178569644 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2099 122 20 0 chr6 10711130 10711434 -178568120 + AluSq SINE Alu 1 310 -3 465 274 9 0 chr6 10711465 10711578 -178567976 - MIR3 SINE MIR -21 187 74 373 196 9 9 chr6 10712120 10712232 -178567322 + (TA)n Simple_repeat Simple_repeat 2 113 0 371 210 72 6 chr6 10712285 10712452 -178567102 + (TA)n Simple_repeat Simple_repeat 2 179 0 294 241 0 74 chr6 10714021 10714129 -178565425 + MIR SINE MIR 33 132 -76 267 307 111 56 chr6 10714586 10714928 -178564626 + MLT1K LTR MaLR 191 551 -37 628 218 8 0 chr6 10715103 10715227 -178564327 + FLAM_A SINE Alu 1 125 -8 331 296 31 75 chr6 10715670 10715829 -178563725 + MER5A DNA MER1_type 26 177 -12 340 259 28 28 chr6 10715851 10715959 -178563595 + MER5A DNA MER1_type 54 161 -28 1629 175 28 15 chr6 10715998 10716323 -178563231 - MLT1A1 LTR MaLR -13 352 24 374 254 62 57 chr6 10716691 10716868 -178562686 + MER5B DNA MER1_type 1 178 0 1622 171 14 24 chr6 10717039 10717326 -178562228 - AluJo SINE Alu -15 297 14 2085 105 14 11 chr6 10717704 10717989 -178561565 - AluSg SINE Alu -12 298 13 2059 127 3 0 chr6 10718241 10718525 -178561029 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr6 10718525 10718549 -178561005 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 484 323 40 20 chr6 10718919 10719117 -178560437 + MIR SINE MIR 23 224 -38 692 230 110 19 chr6 10719217 10719426 -178560128 + L3b LINE CR1 1103 1330 -253 1777 153 0 18 chr6 10719643 10719925 -178559629 + AluJb SINE Alu 32 308 -4 280 356 42 0 chr6 10720060 10720178 -178559376 - MIR SINE MIR -120 142 20 1947 140 14 0 chr6 10720826 10721119 -178558435 + AluSx SINE Alu 1 297 -15 294 140 0 0 chr6 10721692 10721742 -178557812 + MADE1 DNA Mariner 1 50 -30 1424 101 141 4 chr6 10722182 10722409 -178557145 - Tigger2 DNA MER2_type 0 2718 2461 4403 136 29 18 chr6 10722476 10722742 -178556812 - Tigger2 DNA MER2_type -1976 742 480 1914 124 4 0 chr6 10722742 10723008 -178556546 - AluSx SINE Alu -13 299 33 4403 136 29 18 chr6 10723008 10723467 -178556087 - Tigger2 DNA MER2_type -2238 480 9 1163 252 77 48 chr6 10724188 10724669 -178554885 + L2 LINE L2 2819 3313 0 1670 197 10 0 chr6 10726410 10726705 -178552849 + AluJb SINE Alu 1 298 -14 859 235 98 0 chr6 10727006 10727210 -178552344 + MER58A DNA MER1_type 1 224 0 2294 96 3 0 chr6 10727450 10727742 -178551812 - AluSp SINE Alu -20 293 1 1878 133 32 7 chr6 10727754 10728039 -178551515 - AluJo SINE Alu -20 292 1 2318 98 13 0 chr6 10728226 10728542 -178551012 + L1PA8 LINE L1 5851 6170 -2 886 281 50 0 chr6 10728547 10728789 -178550765 - MIR SINE MIR -3 259 6 2321 90 0 0 chr6 10728926 10729215 -178550339 - AluSc SINE Alu -20 289 1 3277 175 24 24 chr6 10729916 10730540 -178549014 + L1MC1 LINE L1 1 624 -5802 * 6435 193 29 33 chr6 10730527 10732926 -178546628 + L1MC1 LINE L1 3903 6293 -320 2027 122 21 0 chr6 10732926 10733212 -178546342 - AluSx SINE Alu -20 292 1 6435 193 29 33 chr6 10733212 10733514 -178546040 + L1MC1 LINE L1 6293 6595 -18 32 0 0 0 chr6 10733517 10733549 -178546005 + AT_rich Low_complexity Low_complexity 1 32 0 316 257 233 38 chr6 10735547 10735579 -178543975 - MIR SINE MIR -2 260 236 613 185 117 19 chr6 10735579 10735741 -178543813 - MER104 DNA MER2_type -2 178 1 316 257 233 38 chr6 10735741 10735918 -178543636 - MIR SINE MIR -26 236 10 703 203 0 8 chr6 10736300 10736418 -178543136 + FLAM_A SINE Alu 5 121 -12 1602 189 0 7 chr6 10736442 10736722 -178542832 + AluJb SINE Alu 19 296 -16 5801 123 30 45 chr6 10737117 10737392 -178542162 - L1PA16 LINE L1 -9 6157 5879 1569 151 7 52 chr6 10737392 10737664 -178541890 - AluJb SINE Alu -52 260 1 5801 123 30 45 chr6 10737664 10738271 -178541283 - L1PA16 LINE L1 -287 5879 5300 7577 55 3 6 chr6 10738271 10739890 -178539664 - L1PA6 LINE L1 -1 6153 4547 5801 123 30 45 chr6 10739890 10740156 -178539398 - L1PA16 LINE L1 -866 5300 5032 853 133 11 22 chr6 10740519 10740699 -178538855 + GA-rich Low_complexity Low_complexity 3 180 0 2307 89 17 0 chr6 10741701 10741993 -178537561 - AluSx SINE Alu -15 297 1 189 0 0 0 chr6 10743127 10743148 -178536406 + (GA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr6 10743736 10743761 -178535793 + AT_rich Low_complexity Low_complexity 1 25 0 258 32 0 0 chr6 10743837 10743868 -178535686 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 718 71 0 0 chr6 10743870 10743955 -178535599 - L1PA8 LINE L1 -13 6159 6075 2472 83 3 6 chr6 10744643 10744956 -178534598 - AluSp SINE Alu -1 312 1 213 281 122 24 chr6 10745640 10745722 -178533832 - L2 LINE L2 0 3313 3224 407 354 159 26 chr6 10746238 10747085 -178532469 - L2 LINE L2 -641 2673 1714 25 31 0 0 chr6 10747182 10747214 -178532340 + AT_rich Low_complexity Low_complexity 1 32 0 7625 222 63 30 chr6 10747444 10750811 -178528743 + L1MD1 LINE L1 19 3275 -3265 2120 164 37 70 chr6 10750811 10751293 -178528261 + MER31B LTR ERV1 1 466 0 7625 222 63 30 chr6 10751293 10752131 -178527423 + L1MD1 LINE L1 3275 4084 -2456 252 0 0 0 chr6 10752131 10752159 -178527395 + (TA)n Simple_repeat Simple_repeat 2 29 0 7625 222 63 30 chr6 10752159 10752267 -178527287 + L1MD1 LINE L1 4084 4187 -2353 1559 174 4 12 chr6 10752267 10752526 -178527028 + AluJo SINE Alu 40 296 -16 7625 222 63 30 chr6 10752526 10752840 -178526714 + L1MD1 LINE L1 4187 4968 -1572 1794 195 78 45 chr6 10752847 10753214 -178526340 - MLT1C LTR MaLR 0 467 81 2305 146 84 30 chr6 10753214 10753618 -178525936 - MSTA LTR MaLR -2 426 1 1794 195 78 45 chr6 10753618 10753697 -178525857 - MLT1C LTR MaLR -386 81 6 4710 179 47 59 chr6 10753705 10753827 -178525727 + L1MD1 LINE L1 4976 5098 -1538 2451 80 0 3 chr6 10753827 10754139 -178525415 + AluY SINE Alu 1 311 0 4710 179 47 59 chr6 10754139 10754613 -178524941 + L1MD1 LINE L1 5098 5576 -1060 2366 90 0 19 chr6 10754613 10754925 -178524629 + AluY SINE Alu 1 306 -5 4710 179 47 59 chr6 10754925 10755128 -178524426 + L1MD1 LINE L1 5576 5780 -856 3107 56 0 0 chr6 10755128 10755483 -178524071 - THE1A LTR MaLR 0 355 1 4710 179 47 59 chr6 10755483 10756029 -178523525 + L1MD1 LINE L1 5780 6310 -326 2304 102 3 0 chr6 10756029 10756324 -178523230 - AluSx SINE Alu -16 296 1 4710 179 47 59 chr6 10756324 10756648 -178522906 + L1MD1 LINE L1 6310 6636 0 337 322 175 0 chr6 10757024 10757195 -178522359 - MIR SINE MIR -12 250 50 621 53 0 0 chr6 10757209 10757284 -178522270 + Alu SINE Alu 2 76 -242 6137 83 5 1 chr6 10757304 10758123 -178521431 + L1PA12 LINE L1 5346 6167 -1 192 152 0 0 chr6 10758146 10758179 -178521375 + A-rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr6 10759337 10759369 -178520185 + AT_rich Low_complexity Low_complexity 1 32 0 323 301 21 0 chr6 10759520 10759613 -178519941 + L1MC4 LINE L1 6614 6708 -1334 1479 141 18 0 chr6 10759820 10760047 -178519507 + MLT1B LTR MaLR 1 231 -159 688 177 0 19 chr6 10760049 10760207 -178519347 + GA-rich Low_complexity Low_complexity 3 157 0 1197 51 0 17 chr6 10760220 10760397 -178519157 + (GAA)n Simple_repeat Simple_repeat 3 176 0 1143 121 24 0 chr6 10760411 10760577 -178518977 + MLT1B LTR MaLR 221 390 0 1586 193 0 60 chr6 10760980 10761133 -178518421 + AluJb SINE Alu 1 125 -187 2228 107 0 7 chr6 10761133 10761446 -178518108 + AluSc SINE Alu 1 309 0 1586 193 0 60 chr6 10761446 10761624 -178517930 + AluJb SINE Alu 125 312 0 302 171 14 0 chr6 10761626 10761696 -178517858 + GA-rich Low_complexity Low_complexity 3 73 0 2247 247 16 11 chr6 10761696 10762267 -178517287 + L1MEc LINE L1 413 986 -5410 1160 160 32 0 chr6 10762313 10762500 -178517054 + AluJb SINE Alu 87 279 -33 297 169 42 0 chr6 10762516 10762587 -178516967 + L1MEc LINE L1 1011 1084 -5312 204 275 101 0 chr6 10762587 10762656 -178516898 + MIR SINE MIR 151 226 -36 1557 131 139 59 chr6 10763684 10764021 -178515533 - THE1B LTR MaLR 0 364 1 422 202 26 70 chr6 10764349 10764463 -178515091 + MER5A DNA MER1_type 4 112 -77 309 79 4 180 chr6 10764601 10764675 -178514879 + MLT1B LTR MaLR 1 65 -309 186 43 0 0 chr6 10764703 10764726 -178514828 + (A)n Simple_repeat Simple_repeat 1 23 0 526 207 37 112 chr6 10765778 10765966 -178513588 - MIR SINE MIR -43 219 46 2213 113 3 0 chr6 10765973 10766273 -178513281 + AluSp SINE Alu 5 305 -8 1284 117 0 0 chr6 10766273 10766444 -178513110 + AluSp SINE Alu 134 304 -9 574 290 45 49 chr6 10766648 10766759 -178512795 + MIR SINE MIR 40 150 -112 2271 105 3 0 chr6 10766759 10767065 -178512489 + AluSg SINE Alu 1 307 -3 574 290 45 49 chr6 10767065 10767177 -178512377 + MIR SINE MIR 150 262 0 200 316 132 0 chr6 10767197 10767273 -178512281 + L2 LINE L2 3186 3271 -1 2502 131 14 3 chr6 10767417 10767777 -178511777 + THE1B LTR MaLR 1 364 0 2276 105 0 10 chr6 10767981 10768286 -178511268 + AluY SINE Alu 1 302 -9 1984 139 0 23 chr6 10768297 10768600 -178510954 + AluSx SINE Alu 1 296 -16 24 53 0 0 chr6 10768777 10768815 -178510739 + AT_rich Low_complexity Low_complexity 1 38 0 2188 64 0 64 chr6 10769129 10769440 -178510114 - AluY SINE Alu -20 291 1 195 42 0 0 chr6 10769967 10769991 -178509563 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 369 309 24 8 chr6 10822143 10822266 -178457288 - L2 LINE L2 0 3272 3148 736 192 49 105 chr6 10822587 10822614 -178456940 - LTR37B LTR ERV1 -1 467 440 2164 229 45 9 chr6 10822614 10823059 -178456495 + LTR40b LTR ERVL 1 461 -1 736 192 49 105 chr6 10823059 10823171 -178456383 - LTR37B LTR ERV1 -28 440 323 2271 114 0 0 chr6 10823171 10823478 -178456076 + AluSg SINE Alu 1 307 -3 736 192 49 105 chr6 10823478 10823490 -178456064 - LTR37B LTR ERV1 -145 323 312 1598 142 32 64 chr6 10823490 10823801 -178455753 + AluJb SINE Alu 1 301 -11 303 28 0 0 chr6 10823801 10823837 -178455717 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 736 192 49 105 chr6 10823837 10823968 -178455586 - LTR37B LTR ERV1 -154 314 198 500 156 43 118 chr6 10824009 10824220 -178455334 - LTR37B LTR ERV1 -268 200 6 402 252 136 7 chr6 10824221 10824376 -178455178 + MIR SINE MIR 86 260 -2 300 154 0 0 chr6 10824454 10824506 -178455048 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr6 10824625 10824655 -178454899 + AT_rich Low_complexity Low_complexity 1 30 0 957 145 42 190 chr6 10825607 10825710 -178453844 + MER33 DNA MER1_type 1 118 -2506 2140 123 3 7 chr6 10825710 10826012 -178453542 + AluSx SINE Alu 1 301 -11 957 145 42 190 chr6 10826012 10826284 -178453270 + MER33 DNA MER1_type 118 363 0 295 318 13 73 chr6 10826363 10826514 -178453040 + MIR3 SINE MIR 48 189 -19 440 294 61 39 chr6 10826781 10826961 -178452593 - MLT1I LTR MaLR -3 406 223 2042 135 4 0 chr6 10827235 10827516 -178452038 + AluSx SINE Alu 1 282 -30 2060 124 3 3 chr6 10827648 10827970 -178451584 + AluSx SINE Alu 1 322 0 589 332 24 0 chr6 10828965 10829170 -178450384 - MIR SINE MIR -6 256 47 880 173 25 12 chr6 10829195 10829357 -178450197 - MLT2C1 LTR ERVL 0 397 234 939 106 0 0 chr6 10829361 10829503 -178450051 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 1224 152 0 30 chr6 10829503 10829700 -178449854 - AluJo SINE Alu -35 277 87 1249 178 46 0 chr6 10829700 10829919 -178449635 - MLT2C1 LTR ERVL -168 229 1 2394 97 0 0 chr6 10829950 10830258 -178449296 + AluSc SINE Alu 1 308 -1 2330 102 3 13 chr6 10830432 10830747 -178448807 - AluSp SINE Alu -1 312 1 1384 152 137 31 chr6 10831020 10831315 -178448239 + AluJo SINE Alu 1 322 0 1201 174 5 9 chr6 10831346 10831559 -178447995 - AluJo SINE Alu -14 298 87 21 0 0 0 chr6 10831815 10831836 -178447718 + AT_rich Low_complexity Low_complexity 1 21 0 1543 160 86 12 chr6 10832522 10832778 -178446776 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr6 10832782 10832807 -178446747 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2167 115 3 3 chr6 10833211 10833516 -178446038 + AluSx SINE Alu 1 305 -7 2023 171 39 26 chr6 10833826 10834241 -178445313 - LOR1b LTR ERV1 -32 429 10 2239 80 11 0 chr6 10835566 10835842 -178443712 + AluSx SINE Alu 21 299 -13 267 98 0 0 chr6 10835842 10835877 -178443677 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2510 84 3 0 chr6 10836283 10836594 -178442960 + AluSp SINE Alu 1 312 -1 386 271 90 0 chr6 10838458 10838580 -178440974 - MIR SINE MIR -115 147 15 2177 105 20 3 chr6 10839118 10839413 -178440141 + AluSc SINE Alu 1 300 -9 825 180 74 0 chr6 10839482 10839671 -178439883 + Tigger3b DNA MER2_type 1 203 -1028 2779 135 98 25 chr6 10839871 10840419 -178439135 + Tigger3b DNA MER2_type 150 737 -494 1877 166 0 7 chr6 10840419 10840721 -178438833 + AluJo SINE Alu 1 300 -12 2287 72 21 7 chr6 10840822 10841112 -178438442 + AluSg1 SINE Alu 1 294 -15 220 111 44 0 chr6 10841142 10841187 -178438367 + (TA)n Simple_repeat Simple_repeat 2 48 0 1646 205 76 59 chr6 10841248 10841332 -178438222 - MLT1C LTR MaLR 0 467 386 1677 167 7 26 chr6 10841332 10841546 -178438008 + AluJo SINE Alu 12 220 -92 2176 100 3 0 chr6 10841546 10841835 -178437719 + AluSq SINE Alu 5 294 -19 1677 167 7 26 chr6 10841835 10841925 -178437629 + AluJo SINE Alu 220 310 -2 1646 205 76 59 chr6 10841925 10842299 -178437255 - MLT1C LTR MaLR -81 386 1 1967 110 55 31 chr6 10842602 10842894 -178436660 - AluSc SINE Alu -10 299 1 2125 74 41 0 chr6 10844428 10844730 -178434824 - AluY SINE Alu 0 313 1 182 308 29 19 chr6 10844756 10844797 -178434757 - MIR SINE MIR -66 196 157 438 20 0 0 chr6 10844797 10844848 -178434706 + (TG)n Simple_repeat Simple_repeat 2 52 0 182 308 29 19 chr6 10844848 10844910 -178434644 - MIR SINE MIR -105 157 92 249 33 0 0 chr6 10845299 10845329 -178434225 + (CA)n Simple_repeat Simple_repeat 2 31 0 2557 57 0 0 chr6 10846692 10846990 -178432564 - AluY SINE Alu -13 298 1 1955 125 18 0 chr6 10847049 10847355 -178432199 - AluSx SINE Alu 0 311 1 888 167 13 7 chr6 10847467 10847617 -178431937 - MER106B DNA MER1_type -908 151 1 183 156 0 0 chr6 10847797 10847829 -178431725 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 372 340 14 14 chr6 10848752 10848961 -178430593 + MIR SINE MIR 40 248 -14 2578 68 0 0 chr6 10849030 10849339 -178430215 + AluSg SINE Alu 1 309 -1 449 244 0 17 chr6 10849707 10849822 -178429732 + L2 LINE L2 3193 3305 -8 365 82 16 16 chr6 10849854 10849915 -178429639 - Alu SINE Alu 0 300 240 357 267 19 29 chr6 10850224 10850329 -178429225 - L1MC/D LINE L1 -1998 5810 5707 2295 95 3 3 chr6 10850329 10850645 -178428909 + LTR8 LTR ERV1 272 587 -104 35 0 0 0 chr6 10850645 10850680 -178428874 + AT_rich Low_complexity Low_complexity 1 35 0 291 274 113 9 chr6 10850852 10850958 -178428596 + L1ME LINE L1 5495 5611 -510 4275 183 58 25 chr6 10851578 10852411 -178427143 + MER21B LTR ERV1 1 860 -3 273 288 0 0 chr6 10853354 10853479 -178426075 + (TG)n Simple_repeat Simple_repeat 1 125 0 2230 122 0 3 chr6 10853792 10854104 -178425450 + AluSx SINE Alu 1 311 -1 1919 125 43 0 chr6 10854451 10854730 -178424824 - AluJo SINE Alu -21 291 1 2296 91 0 7 chr6 10854830 10855139 -178424415 - AluSg SINE Alu -3 307 1 1678 153 0 39 chr6 10855209 10855518 -178424036 + AluJo SINE Alu 12 309 0 1675 142 19 61 chr6 10855583 10855767 -178423787 - AluJo SINE Alu -15 297 130 2354 88 0 0 chr6 10855767 10856061 -178423493 + AluSc SINE Alu 2 295 -14 1675 142 19 61 chr6 10856061 10856186 -178423368 - AluJo SINE Alu -182 130 1 1896 142 28 0 chr6 10857018 10857306 -178422248 + AluJb SINE Alu 1 296 -16 356 241 23 0 chr6 10857318 10857405 -178422149 + L2 LINE L2 3128 3216 -97 258 276 7 97 chr6 10857470 10857571 -178421983 - MIR SINE MIR -12 250 161 1754 161 0 37 chr6 10857571 10857914 -178421640 + AluJo SINE Alu 1 332 0 258 276 7 97 chr6 10857914 10857954 -178421600 - MIR SINE MIR -101 161 119 1579 112 22 9 chr6 10858008 10858240 -178421314 + AluSg/x SINE Alu 67 301 -9 1108 196 222 73 chr6 10858347 10858771 -178420783 - MLT1D LTR MaLR 0 505 19 717 238 38 131 chr6 10859120 10859479 -178420075 + L1MC4 LINE L1 7354 7660 -382 5167 18 0 17 chr6 10859479 10860081 -178419473 - L1PA4 LINE L1 -3 6152 5561 717 238 38 131 chr6 10860081 10860195 -178419359 + L1MC4 LINE L1 7660 7783 -259 284 243 0 0 chr6 10861239 10861313 -178418241 + L1MC4 LINE L1 7969 8042 0 2013 118 0 57 chr6 10861555 10861870 -178417684 - AluSq SINE Alu -16 297 1 275 264 132 7 chr6 10861972 10862116 -178417438 - L2 LINE L2 0 3313 3152 621 239 23 0 chr6 10862230 10862360 -178417194 + AluJo SINE Alu 1 133 -169 904 71 11 44 chr6 10862360 10862495 -178417059 + (GGAA)n Simple_repeat Simple_repeat 1 307 0 904 71 11 44 chr6 10862495 10862678 -178416876 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 1107 148 0 17 chr6 10862766 10862942 -178416612 + AluJo SINE Alu 129 301 -11 244 255 49 59 chr6 10863022 10863124 -178416430 - L2 LINE L2 -1087 2227 2127 1162 205 34 0 chr6 10863125 10863364 -178416190 - MLT1A1 LTR MaLR -3 362 116 1133 265 109 80 chr6 10863364 10863608 -178415946 - L2 LINE L2 -1214 2100 1865 1921 133 14 7 chr6 10863608 10863894 -178415660 + AluJb SINE Alu 2 289 -23 1898 117 67 3 chr6 10863901 10864184 -178415370 + AluSg SINE Alu 3 303 -7 1133 265 109 80 chr6 10864184 10864598 -178414956 - L2 LINE L2 -1454 1860 1414 375 65 0 0 chr6 10864607 10864653 -178414901 + MLT1B LTR MaLR 299 344 -46 2005 239 176 16 chr6 10864797 10865705 -178413849 + L2 LINE L2 333 1385 -1929 2035 113 11 4 chr6 10865707 10866015 -178413539 + AluSx SINE Alu 7 316 0 362 246 94 94 chr6 10866990 10867046 -178412508 + LTR50 LTR ERVL 480 535 -260 1480 216 56 50 chr6 10867046 10867395 -178412159 - MLT1C LTR MaLR 0 467 113 2392 67 0 22 chr6 10867395 10867708 -178411846 - AluSc SINE Alu -3 306 1 1480 216 56 50 chr6 10867708 10867820 -178411734 - MLT1C LTR MaLR -354 113 3 362 246 94 94 chr6 10867820 10868072 -178411482 + LTR50 LTR ERVL 534 788 -7 2011 122 4 0 chr6 10868125 10868403 -178411151 + AluSx SINE Alu 21 299 -13 746 205 43 43 chr6 10868421 10868496 -178411058 + FAM SINE Alu 11 85 -236 2251 140 69 15 chr6 10868496 10868851 -178410703 + MSTA LTR MaLR 1 382 -46 186 43 0 0 chr6 10868851 10868874 -178410680 + (TA)n Simple_repeat Simple_repeat 2 24 0 2251 140 69 15 chr6 10868874 10868924 -178410630 + MSTA LTR MaLR 382 428 0 746 205 43 43 chr6 10868924 10869009 -178410545 + FAM SINE Alu 84 171 -14 1538 214 214 55 chr6 10869228 10869296 -178410258 - MLT1E1 LTR MaLR 0 654 598 2093 122 14 0 chr6 10869296 10869583 -178409971 + AluSx SINE Alu 5 295 -17 1538 214 214 55 chr6 10869583 10870078 -178409476 - MLT1E1 LTR MaLR -56 598 1 550 353 40 15 chr6 10870412 10870684 -178408870 + ERVL LTR ERVL 775 1053 -4711 268 289 103 0 chr6 10871014 10871111 -178408443 - LTR40a LTR ERVL -6 513 407 360 304 47 28 chr6 10871576 10871790 -178407764 - MERVL LTR ERVL -458 5027 4810 644 362 8 0 chr6 10872067 10872324 -178407230 - MERVL LTR ERVL -1047 4438 4180 255 93 0 0 chr6 10872633 10872676 -178406878 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2486 174 6 222 chr6 10872874 10873328 -178406226 + L1M3 LINE L1 4363 4914 -1232 627 80 50 50 chr6 10873328 10873428 -178406126 + AluSg/x SINE Alu 188 287 -22 2486 174 6 222 chr6 10873428 10873898 -178405656 + L1M3 LINE L1 4914 5074 -1072 1695 190 0 3 chr6 10873898 10874193 -178405361 - AluJb SINE Alu -18 294 1 2486 174 6 222 chr6 10874193 10874407 -178405147 + L1M3 LINE L1 5074 5333 -813 647 163 8 47 chr6 10874407 10874507 -178405047 + FLAM_A SINE Alu 5 100 -211 2282 113 80 0 chr6 10874507 10874844 -178404710 + THE1B LTR MaLR 1 364 0 647 163 8 47 chr6 10874844 10874872 -178404682 + FLAM_A SINE Alu 100 128 -183 776 129 8 0 chr6 10874872 10874996 -178404558 + L1M3 LINE L1 5326 5450 -730 2380 286 48 11 chr6 10875516 10876246 -178403308 + ERVL LTR ERVL 287 1043 -3953 1325 220 104 31 chr6 10876303 10876717 -178402837 + MLT1C LTR MaLR 24 467 0 1752 295 48 28 chr6 10876717 10877847 -178401707 + ERVL LTR ERVL 1057 2273 -2723 598 285 69 97 chr6 10877932 10878005 -178401549 + ERVL LTR ERVL 2288 2362 -2634 1972 119 7 7 chr6 10878005 10878299 -178401255 - AluSx SINE Alu -18 294 1 598 285 69 97 chr6 10878299 10878677 -178400877 + ERVL LTR ERVL 2362 2726 -2270 1016 112 0 20 chr6 10879326 10879478 -178400076 + L1PA8 LINE L1 6021 6169 -3 243 156 67 0 chr6 10879483 10879528 -178400026 + MER58 DNA MER1_type 2373 2420 0 2173 94 0 10 chr6 10879679 10879978 -178399576 + AluSx SINE Alu 1 296 -16 1551 136 97 13 chr6 10879978 10880287 -178399267 + MER46B DNA MER2_type 27 236 0 5672 94 36 17 chr6 10880311 10881126 -178398428 - L1PA11 LINE L1 -2 6172 5343 2093 103 3 7 chr6 10881175 10881476 -178398078 - AluY SINE Alu -11 300 1 185 307 176 39 chr6 10881529 10881682 -178397872 + MIR SINE MIR 28 201 -61 338 326 39 8 chr6 10882051 10882180 -178397374 + AluJ SINE Alu 11 143 -159 5402 191 69 76 chr6 10882195 10883776 -178395778 - pTR5 LTR ERV1 -156 2173 31 743 194 84 19 chr6 10883777 10883932 -178395622 + AluJ SINE Alu 143 307 -5 1885 102 16 60 chr6 10884495 10884809 -178394745 + AluSx SINE Alu 5 304 -8 187 264 125 28 chr6 10884831 10884903 -178394651 + MIR SINE MIR 73 151 -111 810 174 12 12 chr6 10884904 10885065 -178394489 - FRAM SINE Alu -15 161 1 2568 214 104 6 chr6 10885077 10885749 -178393805 - L1MD2 LINE L1 -1 6358 5621 2114 99 17 3 chr6 10886251 10886544 -178393010 - AluSx SINE Alu -14 298 2 996 202 32 40 chr6 10886565 10886812 -178392742 + MLT2B1 LTR ERVL 2 246 -274 559 221 140 0 chr6 10886823 10886959 -178392595 - AluJo SINE Alu -41 271 117 1531 146 59 7 chr6 10886959 10887247 -178392307 + AluSq SINE Alu 1 303 -10 4227 152 93 56 chr6 10887346 10888793 -178390761 - pTR5 LTR ERV1 0 2438 743 281 198 23 23 chr6 10889179 10889265 -178390289 + (TA)n Simple_repeat Simple_repeat 1 86 0 200 200 0 0 chr6 10889381 10889426 -178390128 + (ATG)n Simple_repeat Simple_repeat 3 47 0 271 307 99 61 chr6 10889433 10889511 -178390043 - MIR SINE MIR -41 221 147 2304 144 15 15 chr6 10889511 10889901 -178389653 - MLT1B LTR MaLR 0 390 1 271 307 99 61 chr6 10889901 10890034 -178389520 - MIR SINE MIR -115 147 2 1915 141 3 95 chr6 10890549 10890918 -178388636 + MER1B DNA MER1_type 2 336 -1 2231 97 0 0 chr6 10891326 10891624 -178387930 - AluSx SINE Alu -14 298 1 321 292 102 15 chr6 10891846 10891978 -178387576 + MIR SINE MIR 2 143 -69 1474 200 143 83 chr6 10891982 10892733 -178386821 + pTR5 LTR ERV1 744 2050 -388 683 210 127 63 chr6 10892979 10893299 -178386255 + LTR12 LTR ERV1 236 690 -24 766 192 58 0 chr6 10893300 10893456 -178386098 - AluSq SINE Alu -15 298 134 1312 199 15 7 chr6 10893472 10893744 -178385810 - AluSq SINE Alu -39 274 1 576 202 57 16 chr6 10893746 10893870 -178385684 - AluJo/FLAM SINE Alu -171 131 3 1707 127 21 25 chr6 10894231 10894514 -178385040 + AluSx SINE Alu 1 282 -30 182 125 0 50 chr6 10895827 10895867 -178383687 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 2155 102 3 0 chr6 10896025 10896319 -178383235 - AluSq SINE Alu -18 295 1 2916 212 25 25 chr6 10897072 10897756 -178381798 - L1MD3 LINE L1 0 7995 7312 406 319 28 7 chr6 10898007 10898151 -178381403 + MIR SINE MIR 112 258 -4 2050 118 10 0 chr6 10898180 10898484 -178381070 + AluSg SINE Alu 1 307 -3 901 253 42 4 chr6 10898504 10898741 -178380813 + MIR SINE MIR 17 262 0 2311 94 0 0 chr6 10898861 10899170 -178380384 - AluY SINE Alu -2 309 1 1959 127 0 10 chr6 10899208 10899508 -178380046 - AluSx SINE Alu -15 297 1 1282 247 49 45 chr6 10899587 10900010 -178379544 - L1ME2 LINE L1 -6 6227 5800 1435 141 130 0 chr6 10900010 10900272 -178379282 - AluSg1 SINE Alu -13 296 1 1282 247 49 45 chr6 10900272 10900362 -178379192 - L1ME2 LINE L1 -433 5800 5712 784 244 39 19 chr6 10900363 10900568 -178378986 - MER82 DNA MER2_type -1 652 444 2118 92 7 16 chr6 10900595 10900901 -178378653 + AluSx SINE Alu 1 303 -9 254 182 36 0 chr6 10901016 10901071 -178378483 + L1M4 LINE L1 2774 2830 -3316 383 237 32 0 chr6 10901201 10901294 -178378260 - MER82 DNA MER2_type -557 96 1 1032 271 37 9 chr6 10901294 10901615 -178377939 - L1ME2 LINE L1 -525 5710 5381 520 54 68 0 chr6 10901657 10901731 -178377823 + L1PA11 LINE L1 6095 6173 -1 1499 244 13 18 chr6 10901733 10902183 -178377371 - L1ME2 LINE L1 -2925 3290 2843 696 129 54 82 chr6 10902186 10902333 -178377221 - MSTB2 LTR MaLR -55 402 260 434 203 16 47 chr6 10902362 10902433 -178377121 - L1ME2 LINE L1 -3388 2827 2760 2066 122 3 0 chr6 10902433 10902737 -178376817 - AluSx SINE Alu -7 305 1 434 203 16 47 chr6 10902737 10902793 -178376761 - L1ME2 LINE L1 -3455 2760 2704 1710 262 27 10 chr6 10902845 10903330 -178376224 - L1ME2 LINE L1 -5780 616 124 1897 151 0 7 chr6 10904016 10904315 -178375239 + AluJb SINE Alu 1 297 -15 864 149 6 43 chr6 10904408 10904569 -178374985 + AluJb SINE Alu 143 297 -15 326 298 48 0 chr6 10904580 10904684 -178374870 + MER103 DNA DNA 13 121 -45 406 227 9 18 chr6 10905333 10905443 -178374111 - L1ME4a LINE L1 -67 6054 5946 2133 111 0 0 chr6 10905476 10905773 -178373781 + AluSx SINE Alu 1 297 -15 655 216 0 8 chr6 10905877 10906002 -178373552 + FLAM_C SINE Alu 2 125 -18 2287 105 0 0 chr6 10906453 10906757 -178372797 + AluSx SINE Alu 1 304 -8 221 56 0 28 chr6 10906757 10906793 -178372761 + (TA)n Simple_repeat Simple_repeat 1 35 0 1000 212 37 8 chr6 10906956 10907197 -178372357 + L1MB7 LINE L1 5928 6175 -9 346 326 17 65 chr6 10907221 10907462 -178372092 - MIR SINE MIR -24 238 12 186 179 0 0 chr6 10907545 10907573 -178371981 - L2 LINE L2 -21 3251 3224 977 184 0 22 chr6 10907586 10907765 -178371789 - FAM SINE Alu 0 175 1 1179 161 5 0 chr6 10907847 10908040 -178371514 + MER20 DNA MER1_type 26 219 0 1567 168 20 7 chr6 10908218 10908515 -178371039 + L1MB2 LINE L1 5864 6164 -7 2138 108 0 7 chr6 10908530 10908837 -178370717 + AluSx SINE Alu 5 309 -3 307 53 0 0 chr6 10909070 10909108 -178370446 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 269 285 122 16 chr6 10909624 10909747 -178369807 + MIR3 SINE MIR 56 191 -17 27 0 0 0 chr6 10909780 10909807 -178369747 + AT_rich Low_complexity Low_complexity 1 27 0 2366 137 6 3 chr6 10909849 10910208 -178369346 - MER46B DNA MER2_type 0 236 2 2063 130 0 0 chr6 10910291 10910590 -178368964 + AluSx SINE Alu 1 299 -13 692 308 71 5 chr6 10911287 10911511 -178368043 - MIR SINE MIR -3 259 21 1576 209 30 6 chr6 10911659 10911989 -178367565 - MER58B DNA MER1_type -3 338 1 2369 153 37 19 chr6 10912090 10912521 -178367033 + L1MA6 LINE L1 5862 6300 0 286 333 116 21 chr6 10912555 10912744 -178366810 - L2 LINE L2 -113 3159 2953 780 143 42 0 chr6 10912776 10912895 -178366659 + FLAM_C SINE Alu 2 125 -18 2117 92 3 0 chr6 10912900 10913213 -178366341 - AluSp SINE Alu 0 314 1 2096 73 0 4 chr6 10913314 10913589 -178365965 - AluY SINE Alu -20 291 18 362 266 32 63 chr6 10913671 10913755 -178365799 - L2 LINE L2 0 3313 3235 2131 100 3 3 chr6 10913755 10914055 -178365499 + AluSq SINE Alu 1 300 -13 362 266 32 63 chr6 10914055 10914128 -178365426 - L2 LINE L2 -78 3235 3161 25 0 0 0 chr6 10918293 10918318 -178361236 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr6 10918920 10918940 -178360614 + (T)n Simple_repeat Simple_repeat 1 20 0 2178 94 4 0 chr6 10926310 10926587 -178352967 + AluSg SINE Alu 1 278 -32 24 67 0 0 chr6 10928498 10928543 -178351011 + AT_rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr6 10930131 10930171 -178349383 + AT_rich Low_complexity Low_complexity 1 40 0 200 35 35 0 chr6 10930663 10930692 -178348862 + (GA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr6 10930891 10930939 -178348615 + AT_rich Low_complexity Low_complexity 1 48 0 24 63 0 16 chr6 10931442 10931492 -178348062 + AT_rich Low_complexity Low_complexity 1 51 -11 190 28 28 56 chr6 10931492 10931528 -178348026 + (TTG)n Simple_repeat Simple_repeat 2 36 0 24 63 0 16 chr6 10931528 10931540 -178348014 + AT_rich Low_complexity Low_complexity 51 62 0 294 143 0 0 chr6 10931722 10931771 -178347783 + (CAG)n Simple_repeat Simple_repeat 3 51 0 225 0 0 0 chr6 10933343 10933368 -178346186 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr6 10933367 10933392 -178346162 + (TG)n Simple_repeat Simple_repeat 2 26 0 34 24 0 0 chr6 10937912 10937953 -178341601 + GC_rich Low_complexity Low_complexity 1 41 0 252 86 0 0 chr6 10940930 10940965 -178338589 + (T)n Simple_repeat Simple_repeat 1 35 0 210 236 0 0 chr6 10945622 10945677 -178333877 + (CGAG)n Simple_repeat Simple_repeat 2 56 0 292 317 0 48 chr6 10945753 10945920 -178333634 + GA-rich Low_complexity Low_complexity 4 162 0 186 263 0 0 chr6 10945987 10946044 -178333510 + C-rich Low_complexity Low_complexity 1 57 0 217 227 0 0 chr6 10946047 10946091 -178333463 + T-rich Low_complexity Low_complexity 4 47 0 305 165 0 52 chr6 10946117 10946214 -178333340 + CT-rich Low_complexity Low_complexity 1 92 0 369 279 13 56 chr6 10946331 10946583 -178332971 + CT-rich Low_complexity Low_complexity 1 241 0 182 114 0 29 chr6 10946723 10946758 -178332796 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 231 125 0 0 chr6 10946774 10946814 -178332740 + (AGGGGG)n Simple_repeat Simple_repeat 5 44 0 255 31 0 0 chr6 10948711 10948743 -178330811 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 762 130 0 0 chr6 10949337 10949468 -178330086 + (GGA)n Simple_repeat Simple_repeat 3 133 0 23 0 0 0 chr6 10953434 10953457 -178326097 + GC_rich Low_complexity Low_complexity 1 23 0 240 188 0 0 chr6 10954457 10954505 -178325049 + (CA)n Simple_repeat Simple_repeat 2 49 0 438 301 133 35 chr6 10955904 10956107 -178323447 + MIR SINE MIR 31 253 -9 387 0 0 0 chr6 10957845 10957888 -178321666 + (TG)n Simple_repeat Simple_repeat 2 44 0 419 301 18 0 chr6 10959275 10959388 -178320166 + MER5B DNA MER1_type 1 115 -63 388 168 0 62 chr6 10963217 10963330 -178316224 + L1PA11 LINE L1 6068 6173 -1 180 306 16 16 chr6 10964325 10964387 -178315167 + L3 LINE CR1 1513 1574 -3 2014 126 49 0 chr6 10964719 10965004 -178314550 - AluSx SINE Alu -13 299 1 396 256 0 0 chr6 10965068 10965154 -178314400 + MLT1L LTR MaLR 69 154 -461 481 310 12 23 chr6 10965749 10965920 -178313634 + MIR3 SINE MIR 25 193 -15 180 205 0 51 chr6 10965886 10965925 -178313629 + L3 LINE CR1 1535 1571 -6 * 1686 177 27 17 chr6 10966092 10966392 -178313162 - AluJo SINE Alu -9 303 1 2420 85 0 3 chr6 10966643 10966948 -178312606 - AluSq SINE Alu -8 305 2 430 242 0 0 chr6 10967010 10967109 -178312445 - FLAM_C SINE Alu 0 143 45 750 279 135 53 chr6 10967441 10967919 -178311635 - L2 LINE L2 0 3313 2757 2446 81 0 0 chr6 10967919 10968214 -178311340 + AluSq SINE Alu 1 295 -18 750 279 135 53 chr6 10968214 10968368 -178311186 - L2 LINE L2 -556 2757 2617 776 266 76 10 chr6 10968372 10968662 -178310892 - L2 LINE L2 -1109 2205 1897 209 287 87 17 chr6 10968746 10968850 -178310704 + MIR SINE MIR 92 206 -56 1480 186 54 61 chr6 10968850 10969242 -178310312 - MLT1B LTR MaLR -1 389 1 2406 68 0 0 chr6 10969562 10969871 -178309683 - AluSg SINE Alu 0 309 1 271 75 0 0 chr6 10970397 10970437 -178309117 - Alu SINE Alu -4 297 258 1323 51 0 6 chr6 10970437 10970593 -178308961 - AluY SINE Alu -156 155 1 949 291 75 0 chr6 10970595 10970966 -178308588 + L1MC4a LINE L1 5514 5912 -1896 851 176 0 0 chr6 10971132 10971263 -178308291 - FLAM_C SINE Alu -2 131 1 1944 142 0 10 chr6 10971276 10971602 -178307952 - AluSx SINE Alu 0 323 1 602 242 52 41 chr6 10971605 10972047 -178307507 - L1M4 LINE L1 -2848 3298 2852 230 163 0 0 chr6 10972072 10972115 -178307439 - L1MA9 LINE L1 -10 6302 6260 586 227 67 0 chr6 10972217 10972367 -178307187 - MLT1J LTR MaLR -113 398 239 266 283 11 33 chr6 10972393 10972485 -178307069 - MLT1J LTR MaLR -338 173 84 1589 160 93 4 chr6 10972534 10972803 -178306751 + AluJb SINE Alu 4 296 -16 695 136 0 97 chr6 10973194 10973348 -178306206 - L1MA9 LINE L1 -37 6275 6137 2316 113 0 0 chr6 10973349 10973650 -178305904 - AluSx SINE Alu -11 301 1 1083 237 147 25 chr6 10974272 10974707 -178304847 + L1MC4 LINE L1 7554 8041 -1 262 250 20 30 chr6 10974689 10974789 -178304765 + L1M4 LINE L1 5033 5131 -1015 * 26 0 0 0 chr6 10974988 10975014 -178304540 + AT_rich Low_complexity Low_complexity 1 26 0 2104 111 0 7 chr6 10975068 10975366 -178304188 - AluSg SINE Alu -12 298 3 620 193 0 18 chr6 10975367 10975481 -178304073 + Tigger2 DNA MER2_type 2597 2708 -10 1909 113 3 7 chr6 10976763 10977083 -178302471 - AluSq SINE Alu 0 319 1 225 0 0 0 chr6 10977085 10977110 -178302444 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2153 97 3 7 chr6 10977113 10977422 -178302132 - AluSg SINE Alu -2 308 1 2073 97 3 22 chr6 10977665 10977976 -178301578 - AluSq SINE Alu -8 305 1 1749 137 43 4 chr6 10978935 10979213 -178300341 + AluSx SINE Alu 10 298 -14 276 231 62 15 chr6 10979491 10979556 -178299998 - L2 LINE L2 -4 3309 3242 264 240 132 66 chr6 10980339 10980460 -178299094 + MIR3 SINE MIR 2 130 -78 816 150 8 8 chr6 10980615 10980748 -178298806 + FLAM_A SINE Alu 1 133 0 1974 131 24 0 chr6 10980827 10981125 -178298429 - AluSx SINE Alu -7 305 1 2218 90 3 10 chr6 10981139 10981451 -178298103 - AluSp SINE Alu 0 313 4 2102 108 13 3 chr6 10981458 10981763 -178297791 - AluSx SINE Alu -4 308 1 315 228 67 40 chr6 10981794 10981943 -178297611 + L1ME4a LINE L1 5968 6120 -1 1991 102 14 10 chr6 10982666 10982961 -178296593 + AluSx SINE Alu 1 296 -16 312 226 157 57 chr6 10982994 10983153 -178296401 + L1ME LINE L1 5525 5699 -422 2305 87 3 3 chr6 10983252 10983563 -178295991 + AluY SINE Alu 1 311 0 288 0 0 0 chr6 10983570 10983602 -178295952 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 274 104 7 chr6 10983948 10984083 -178295471 - MIR SINE MIR -56 206 59 211 337 12 12 chr6 10984246 10984329 -178295225 + MIR SINE MIR 8 90 -172 792 234 60 5 chr6 10984361 10984545 -178295009 + MIR SINE MIR 2 195 -67 833 292 129 15 chr6 10984576 10985032 -178294522 - L2 LINE L2 -4 3309 2794 2380 138 82 30 chr6 10985132 10985558 -178293996 + MER83 LTR ERV1 1 448 0 1639 183 14 0 chr6 10986101 10986386 -178293168 - AluJb SINE Alu -23 289 1 791 134 0 0 chr6 10986842 10986954 -178292600 + FLAM_C SINE Alu 14 125 -18 1511 203 10 0 chr6 10986970 10987265 -178292289 + AluJo SINE Alu 1 298 -14 193 351 206 15 chr6 10988789 10988920 -178290634 + L2 LINE L2 3109 3264 -8 297 0 0 0 chr6 10989028 10989061 -178290493 + (CA)n Simple_repeat Simple_repeat 1 33 0 897 185 7 0 chr6 10989121 10989272 -178290282 - FRAM SINE Alu -14 152 1 645 126 42 7 chr6 10989608 10989751 -178289803 + CT-rich Low_complexity Low_complexity 1 148 0 1307 175 130 0 chr6 10989751 10990020 -178289534 - AluJb SINE Alu -7 305 2 290 282 45 18 chr6 10990804 10990914 -178288640 - MIR3 SINE MIR 0 208 96 2059 105 0 17 chr6 10991145 10991439 -178288115 - AluSq SINE Alu -24 289 1 581 216 18 0 chr6 10991815 10991926 -178287628 - MER81 DNA DNA 0 114 2 2326 66 0 34 chr6 10992228 10992548 -178287006 + AluY SINE Alu 1 309 -2 180 239 60 30 chr6 10992715 10992782 -178286772 + MIR SINE MIR 50 118 -90 296 305 91 39 chr6 10993357 10993511 -178286043 - MIR SINE MIR -99 163 2 486 313 0 43 chr6 10993813 10993976 -178285578 - MIR SINE MIR -13 249 94 349 268 71 9 chr6 10994103 10994215 -178285339 - MIR SINE MIR -52 210 92 352 227 107 0 chr6 10994413 10994488 -178285066 + MER58B DNA MER1_type 1 83 -258 1352 102 0 10 chr6 10995153 10995349 -178284205 - AluSq SINE Alu -11 302 109 2782 62 5 19 chr6 10995349 10995848 -178283706 + LTR7 LTR ERV1 1 448 -2 900 78 0 0 chr6 10995848 10995963 -178283591 - AluSq SINE Alu -197 115 1 944 192 120 17 chr6 10995963 10996197 -178283357 + MER58B DNA MER1_type 84 341 0 1377 175 98 7 chr6 10996574 10996690 -178282864 + AluJo SINE Alu 1 105 -207 189 74 0 0 chr6 10996690 10996717 -178282837 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1377 175 98 7 chr6 10996717 10996886 -178282668 + AluJo SINE Alu 105 312 0 214 239 109 43 chr6 10996918 10997010 -178282544 + MIR SINE MIR 82 179 -83 2127 125 0 0 chr6 10997306 10997617 -178281937 - AluSq SINE Alu -2 311 1 323 89 54 18 chr6 10997649 10997705 -178281849 + MER6 DNA MER2_type 483 540 -325 1734 301 51 27 chr6 10997816 10998916 -178280638 + HERV16 LTR ERVL 1088 2273 -2723 605 284 70 96 chr6 10998996 10999074 -178280480 + HERV16 LTR ERVL 2282 2361 -2635 1972 119 7 7 chr6 10999074 10999368 -178280186 - AluSx SINE Alu -18 294 1 605 284 70 96 chr6 10999368 10999746 -178279808 + HERV16 LTR ERVL 2361 2726 -2270 1016 112 0 20 chr6 11000392 11000544 -178279010 + L1PA8 LINE L1 6021 6169 -3 243 156 67 0 chr6 11000549 11000594 -178278960 + MER58B DNA MER1_type 294 341 0 2173 94 0 10 chr6 11000745 11001044 -178278510 + AluSx SINE Alu 1 296 -16 1551 136 97 13 chr6 11001044 11001353 -178278201 + MER46B DNA MER2_type 27 236 0 5698 100 27 17 chr6 11001377 11002199 -178277355 - L1PA11 LINE L1 -2 6172 5343 2113 99 3 7 chr6 11002248 11002550 -178277004 - AluY SINE Alu -10 301 1 188 307 176 39 chr6 11002603 11002756 -178276798 + MIR SINE MIR 28 201 -61 349 318 39 8 chr6 11003124 11003253 -178276301 + AluJ SINE Alu 11 143 -159 5360 195 69 76 chr6 11003268 11004850 -178274704 - pTR5 LTR ERV1 -156 2173 31 751 192 83 19 chr6 11004850 11005006 -178274548 + AluJ SINE Alu 142 307 -5 1910 99 16 60 chr6 11005569 11005883 -178273671 + AluSx SINE Alu 5 304 -8 187 264 125 28 chr6 11005905 11005977 -178273577 + MIR SINE MIR 73 151 -111 815 174 12 12 chr6 11005978 11006139 -178273415 - FRAM SINE Alu -15 161 1 2537 221 104 7 chr6 11006151 11006849 -178272705 - L1MD2 LINE L1 -1 6358 5589 2079 92 17 10 chr6 11007323 11007617 -178271937 - AluSx SINE Alu -14 298 3 236 232 0 0 chr6 11007620 11007676 -178271878 - L1MEc LINE L1 -3456 2759 2704 1696 264 27 10 chr6 11007728 11008213 -178271341 - L1MEc LINE L1 -5780 616 124 1911 147 0 7 chr6 11008899 11009198 -178270356 + AluJb SINE Alu 1 297 -15 864 149 6 43 chr6 11009291 11009452 -178270102 + AluJb SINE Alu 143 297 -15 326 298 48 0 chr6 11009463 11009567 -178269987 + MER103 DNA DNA 13 121 -45 406 227 9 18 chr6 11010217 11010327 -178269227 - L1ME4a LINE L1 -67 6054 5946 2133 111 0 0 chr6 11010360 11010657 -178268897 + AluSx SINE Alu 1 297 -15 625 214 0 16 chr6 11010761 11010887 -178268667 + FLAM_C SINE Alu 2 125 -18 2272 109 0 0 chr6 11011343 11011647 -178267907 + AluSx SINE Alu 1 304 -8 239 53 0 26 chr6 11011647 11011685 -178267869 + (TA)n Simple_repeat Simple_repeat 2 38 0 35 41 0 0 chr6 11012040 11012089 -178267465 + GC_rich Low_complexity Low_complexity 1 49 0 23 54 0 0 chr6 11012106 11012143 -178267411 + GC_rich Low_complexity Low_complexity 1 37 0 611 234 21 0 chr6 11012232 11012373 -178267181 - AluJo SINE Alu -126 186 43 189 74 0 0 chr6 11012554 11012581 -178266973 + (T)n Simple_repeat Simple_repeat 1 27 0 2167 99 3 10 chr6 11012671 11012975 -178266579 + AluSx SINE Alu 1 302 -10 546 150 0 79 chr6 11013026 11013153 -178266401 - Charlie5 DNA MER1_type 0 2624 2508 1917 126 0 41 chr6 11013153 11013470 -178266084 + AluSx SINE Alu 2 305 -7 356 141 113 0 chr6 11013470 11013541 -178266013 + L1ME2 LINE L1 2680 2758 -3388 696 129 54 82 chr6 11013570 11013717 -178265837 + MSTB2 LTR MaLR 260 402 -55 1521 242 14 16 chr6 11013720 11014158 -178265396 + L1ME2 LINE L1 2774 3210 -2936 520 54 68 0 chr6 11014173 11014247 -178265307 - L1PA11 LINE L1 -1 6173 6095 1046 268 37 9 chr6 11014289 11014610 -178264944 + L1ME2 LINE L1 5312 5641 -525 383 237 32 0 chr6 11014610 11014703 -178264851 + MER82 DNA MER2_type 1 96 -557 274 164 36 0 chr6 11014833 11014888 -178264666 - L1M4 LINE L1 -3316 2830 2774 2126 91 7 16 chr6 11015003 11015310 -178264244 - AluSx SINE Alu -8 304 1 784 244 39 19 chr6 11015337 11015542 -178264012 + MER82 DNA MER2_type 444 652 -1 1264 246 48 50 chr6 11015543 11015636 -178263918 + L1ME2 LINE L1 5643 5735 -429 1406 145 130 0 chr6 11015636 11015898 -178263656 + AluSg1 SINE Alu 1 296 -13 1264 246 48 50 chr6 11015898 11016321 -178263233 + L1ME2 LINE L1 5735 6158 -6 1956 127 0 10 chr6 11016400 11016700 -178262854 + AluSx SINE Alu 1 297 -15 2217 101 0 3 chr6 11016739 11017047 -178262507 + AluSg SINE Alu 1 307 -3 180 0 0 0 chr6 11017049 11017069 -178262485 + (TA)n Simple_repeat Simple_repeat 2 21 0 417 278 127 58 chr6 11017739 11017792 -178261762 + MIR SINE MIR 32 80 -182 2321 88 3 0 chr6 11017792 11018100 -178261454 - AluSp SINE Alu -4 309 1 417 278 127 58 chr6 11018100 11018251 -178261303 + MIR SINE MIR 80 250 -12 1716 144 34 7 chr6 11018415 11018707 -178260847 + AluJb SINE Alu 1 300 -12 334 127 28 14 chr6 11018707 11018778 -178260776 + GA-rich Low_complexity Low_complexity 1 72 0 3679 86 48 11 chr6 11019617 11020154 -178259400 - L1PA11 LINE L1 -2 6172 5616 2170 194 88 10 chr6 11020987 11021508 -178258046 - L1MB7 LINE L1 -16 6168 5607 2337 93 0 0 chr6 11021508 11021821 -178257733 - AluSq SINE Alu 0 313 1 555 165 0 0 chr6 11021821 11021906 -178257648 + Tigger5 DNA MER2_type 2239 2323 0 1626 98 9 0 chr6 11022176 11022400 -178257154 + AluSq SINE Alu 1 226 -87 1035 83 0 0 chr6 11022400 11022533 -178257021 + AluSg/x SINE Alu 163 295 -15 2083 102 0 17 chr6 11022586 11022880 -178256674 + AluSq SINE Alu 1 289 -24 290 282 45 18 chr6 11023112 11023222 -178256332 + MIR3 SINE MIR 96 208 0 1307 175 130 0 chr6 11024005 11024274 -178255280 + AluJb SINE Alu 2 305 -7 635 133 42 7 chr6 11024274 11024417 -178255137 + GA-rich Low_complexity Low_complexity 1 148 0 897 185 7 0 chr6 11024753 11024904 -178254650 + FRAM SINE Alu 1 152 -14 351 0 0 0 chr6 11024964 11025003 -178254551 + (TG)n Simple_repeat Simple_repeat 1 39 0 195 152 0 0 chr6 11026075 11026121 -178253433 + G-rich Low_complexity Low_complexity 1 46 0 180 185 0 0 chr6 11026135 11026189 -178253365 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 234 220 0 44 chr6 11026211 11026302 -178253252 + G-rich Low_complexity Low_complexity 2 88 0 2224 95 13 0 chr6 11026998 11027302 -178252252 - AluSp SINE Alu -5 308 1 519 259 36 18 chr6 11027825 11027991 -178251563 - MLT1K LTR MaLR -7 581 413 301 260 0 0 chr6 11027995 11028072 -178251482 + MER81 DNA DNA 1 77 -37 389 323 103 5 chr6 11028081 11028276 -178251278 - MLT1K LTR MaLR -164 424 211 1215 158 5 0 chr6 11028276 11028478 -178251076 + AluJo SINE Alu 1 203 -109 246 32 0 0 chr6 11028497 11028528 -178251026 + (A)n Simple_repeat Simple_repeat 1 31 0 1786 134 14 0 chr6 11028748 11029024 -178250530 + AluSx SINE Alu 32 311 -1 2056 112 20 0 chr6 11029336 11029630 -178249924 - AluSx SINE Alu -12 300 1 992 180 20 10 chr6 11029861 11030061 -178249493 + AluJo SINE Alu 87 288 -24 2283 96 0 0 chr6 11030098 11030399 -178249155 + AluSx SINE Alu 3 303 -9 324 237 155 21 chr6 11031861 11031958 -178247596 + L2 LINE L2 3204 3313 0 22 56 0 0 chr6 11032081 11032117 -178247437 + AT_rich Low_complexity Low_complexity 1 36 0 213 309 0 53 chr6 11033064 11033158 -178246396 + MIR SINE MIR 58 146 -116 1869 141 0 3 chr6 11033765 11034056 -178245498 - AluSx SINE Alu -22 290 1 288 333 116 21 chr6 11034087 11034276 -178245278 + L2 LINE L2 2953 3159 -113 2136 167 52 19 chr6 11034310 11034735 -178244819 - L1MA6 LINE L1 0 6300 5862 239 357 21 17 chr6 11034835 11035070 -178244484 + MER58 DNA MER1_type 1 236 -2184 21 91 0 0 chr6 11035270 11035314 -178244240 + GC_rich Low_complexity Low_complexity 1 44 0 623 115 0 0 chr6 11035463 11035550 -178244004 - AluS SINE Alu -224 88 2 295 208 56 28 chr6 11035709 11035781 -178243773 + MIR SINE MIR 58 131 -131 1316 183 65 1 chr6 11035797 11036088 -178243466 + L1M4 LINE L1 5307 5617 -567 1716 128 53 18 chr6 11036092 11036374 -178243180 + AluSx SINE Alu 1 292 -20 2158 88 3 3 chr6 11036375 11036672 -178242882 + AluSp SINE Alu 1 297 -16 1493 80 10 0 chr6 11037240 11037440 -178242114 + AluSp SINE Alu 22 223 -90 335 43 0 0 chr6 11037440 11037487 -178242067 + AluSp SINE Alu 256 302 -1 1403 184 20 30 chr6 11037499 11037798 -178241756 + AluJo SINE Alu 1 296 -16 212 281 52 31 chr6 11038705 11038801 -178240753 - MIR3 SINE MIR -44 164 67 1965 130 0 37 chr6 11038978 11039302 -178240252 - AluSx SINE Alu 0 312 1 1890 136 0 3 chr6 11039314 11039623 -178239931 - AluSx SINE Alu 0 308 1 1948 120 3 13 chr6 11039685 11039993 -178239561 + AluSg SINE Alu 1 305 -5 311 326 44 30 chr6 11040837 11040972 -178238582 - L2 LINE L2 -18 3295 3159 412 311 101 8 chr6 11040972 11041268 -178238286 - L2 LINE L2 -225 3047 2717 1586 137 11 8 chr6 11041279 11041541 -178238013 - AluSx SINE Alu -12 300 38 1374 147 13 4 chr6 11041541 11041766 -178237788 + AluSq SINE Alu 64 290 -23 2089 101 0 3 chr6 11042414 11042700 -178236854 - AluSg SINE Alu -17 293 9 347 248 24 48 chr6 11044263 11044388 -178235166 - MIR SINE MIR -135 127 6 509 245 123 18 chr6 11044611 11044774 -178234780 + MIR SINE MIR 82 261 -1 1631 176 0 13 chr6 11045214 11045526 -178234028 + AluSx SINE Alu 1 308 -4 888 168 5 47 chr6 11046802 11046993 -178232561 - AluSg SINE Alu -17 295 113 7082 170 121 38 chr6 11047011 11048655 -178230899 - pTR5 LTR ERV1 -9 2429 108 2920 212 77 64 chr6 11048655 11049963 -178229591 + LTR12 LTR ERV1 2 714 0 639 138 32 0 chr6 11049963 11050057 -178229497 - AluSg SINE Alu -199 111 15 1710 190 66 29 chr6 11050219 11050650 -178228904 + LTR10E LTR ERV1 161 602 0 1576 167 4 4 chr6 11050650 11050914 -178228640 - AluSx SINE Alu -48 264 1 236 330 117 0 chr6 11051208 11051302 -178228252 - MIR SINE MIR -59 149 45 1161 123 11 0 chr6 11051303 11051482 -178228072 + AluSg/x SINE Alu 123 303 -9 2597 211 90 4 chr6 11051482 11052342 -178227212 + L1MD1 LINE L1 2389 3316 -3224 1369 192 16 0 chr6 11052403 11052658 -178226896 + AluJb SINE Alu 6 264 -48 1961 219 25 0 chr6 11052737 11053213 -178226341 + L1MB8 LINE L1 4338 4825 -1321 639 39 0 0 chr6 11053214 11053291 -178226263 + AluS SINE Alu 2 78 -235 3452 180 46 42 chr6 11053315 11053774 -178225780 + L1MB8 LINE L1 5386 5851 -327 2287 89 0 0 chr6 11053774 11054078 -178225476 + AluSq SINE Alu 2 305 -8 3452 180 46 42 chr6 11054078 11054408 -178225146 + L1MB8 LINE L1 5851 6178 0 472 200 0 12 chr6 11054423 11054508 -178225046 + FLAM_A SINE Alu 33 116 -26 768 164 0 0 chr6 11054648 11054770 -178224784 + FLAM_C SINE Alu 2 123 -10 666 173 56 26 chr6 11054787 11054907 -178224647 + L1MD1 LINE L1 3467 3582 -2958 2048 119 3 0 chr6 11054907 11055210 -178224344 - AluSq SINE Alu -8 305 2 666 173 56 26 chr6 11055210 11055320 -178224234 + L1MD1 LINE L1 3582 3704 -2836 1588 234 90 11 chr6 11055329 11055697 -178223857 + L1MD1 LINE L1 4379 4793 -1747 2129 110 0 10 chr6 11055697 11056006 -178223548 + AluSg SINE Alu 1 306 -4 1588 234 90 11 chr6 11056006 11056106 -178223448 + L1MD1 LINE L1 4793 4884 -1656 2069 117 7 0 chr6 11056109 11056418 -178223136 + AluSq SINE Alu 1 311 -2 390 159 0 155 chr6 11056431 11056531 -178223023 + MER7A DNA MER2_type 1 80 -266 * 806 173 29 0 chr6 11056518 11056657 -178222897 + MER7A DNA MER2_type 194 336 0 2001 187 85 25 chr6 11056663 11057309 -178222245 + L1MD1 LINE L1 5007 5613 -1140 2203 104 0 13 chr6 11057309 11057617 -178221937 + AluSx SINE Alu 1 304 -8 2001 187 85 25 chr6 11057617 11058459 -178221095 + L1MD1 LINE L1 5613 6753 0 1063 181 75 4 chr6 11058687 11058913 -178220641 - AluJo SINE Alu -8 304 63 1065 71 0 0 chr6 11058915 11059055 -178220499 + AluSg/x SINE Alu 166 305 -7 24 0 0 0 chr6 11059498 11059522 -178220032 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 11059536 11059558 -178219996 + AT_rich Low_complexity Low_complexity 1 22 0 1932 65 0 4 chr6 11060340 11060588 -178218966 + L1PA4 LINE L1 5909 6155 0 2566 167 11 23 chr6 11060588 11061062 -178218492 + L1MB7 LINE L1 5663 6130 -54 448 286 131 6 chr6 11062079 11062197 -178217357 + L2 LINE L2 2550 2698 -616 2221 101 0 28 chr6 11062197 11062515 -178217039 - AluSg SINE Alu -1 309 1 448 286 131 6 chr6 11062515 11062571 -178216983 + L2 LINE L2 2698 2746 -568 405 243 10 10 chr6 11062574 11062677 -178216877 + L1MC5 LINE L1 7758 7860 -101 604 301 251 5 chr6 11062765 11063144 -178216410 + L2 LINE L2 2842 3313 0 212 273 121 20 chr6 11063379 11063478 -178216076 + MIR3 SINE MIR 5 113 -95 2119 85 18 0 chr6 11063793 11064075 -178215479 - AluSc SINE Alu -22 287 1 1833 122 7 14 chr6 11064793 11065132 -178214422 + AluSx SINE Alu 1 337 0 1847 103 139 48 chr6 11065307 11065638 -178213916 - MER46B DNA MER2_type 0 236 1 2300 58 3 42 chr6 11066013 11066325 -178213229 + AluY SINE Alu 1 300 -11 1843 161 0 19 chr6 11066849 11067165 -178212389 - AluJb SINE Alu -2 310 1 1928 131 68 14 chr6 11067635 11067741 -178211813 + L1PA11 LINE L1 5803 5902 -272 2109 126 3 0 chr6 11067741 11068051 -178211503 + AluSx SINE Alu 1 311 -1 1928 131 68 14 chr6 11068051 11068296 -178211258 + L1PA11 LINE L1 5902 6173 -1 893 206 84 73 chr6 11068595 11068760 -178210794 + MLT1A1 LTR MaLR 1 163 -202 2070 81 4 0 chr6 11068760 11069032 -178210522 + AluSx SINE Alu 1 273 -39 893 206 84 73 chr6 11069032 11069320 -178210234 + MLT1A1 LTR MaLR 163 362 -3 225 359 65 22 chr6 11069651 11069882 -178209672 + L2 LINE L2 733 973 -2341 2070 122 0 3 chr6 11069887 11070199 -178209355 - AluY SINE Alu 0 311 1 275 289 173 0 chr6 11070645 11070749 -178208805 + MIR SINE MIR 13 134 -128 267 273 40 100 chr6 11071026 11071176 -178208378 + L2 LINE L2 2952 3092 -180 1734 121 71 11 chr6 11071211 11071492 -178208062 - AluSx SINE Alu -14 298 1 312 216 95 0 chr6 11072192 11072266 -178207288 - L2 LINE L2 0 3313 3233 1261 122 48 0 chr6 11072267 11072455 -178207099 - AluSq SINE Alu -114 199 3 492 218 57 104 chr6 11072913 11073106 -178206448 + MIR SINE MIR 3 186 -76 2391 73 3 7 chr6 11074838 11075141 -178204413 - AluSp SINE Alu -11 302 1 1133 188 5 0 chr6 11075175 11075383 -178204171 + AluJb SINE Alu 87 295 -17 1381 125 44 36 chr6 11075724 11075972 -178203582 - LTR10E LTR ERV1 -21 612 363 1220 46 10 34 chr6 11075972 11076170 -178203384 - LTR10E LTR ERV1 -381 252 2 513 120 0 0 chr6 11076295 11076370 -178203184 + AluS SINE Alu 2 76 -236 1893 78 90 15 chr6 11076396 11076664 -178202890 + AluSc SINE Alu 1 288 -21 1838 200 95 27 chr6 11077461 11077912 -178201642 + LTR2B LTR ERV1 9 490 0 235 86 0 0 chr6 11078443 11078478 -178201076 - L2 LINE L2 0 3313 3279 731 218 147 107 chr6 11079229 11079679 -178199875 - MLT1J LTR MaLR -43 468 1 357 224 0 0 chr6 11079779 11079846 -178199708 - MER2 DNA MER2_type -3 342 276 1919 109 33 4 chr6 11079847 11080122 -178199432 + AluSq SINE Alu 1 283 -30 1338 122 0 0 chr6 11080122 11080310 -178199244 + AluSg/x SINE Alu 115 302 -8 1012 146 70 0 chr6 11080392 11080563 -178198991 - MER2 DNA MER2_type -159 186 4 260 286 214 18 chr6 11080779 11080891 -178198663 + MER5A DNA MER1_type 50 183 -6 922 26 78 0 chr6 11081722 11081837 -178197717 - L1PA7 LINE L1 -1 6153 6030 379 146 49 37 chr6 11082317 11082399 -178197155 - L1MA10 LINE L1 -4 6330 6248 899 170 0 0 chr6 11082924 11083059 -178196495 + FRAM SINE Alu 2 136 -40 222 250 0 0 chr6 11083852 11083900 -178195654 + T-rich Low_complexity Low_complexity 1 48 0 881 168 0 56 chr6 11084776 11084955 -178194599 - FRAM SINE Alu -5 171 3 2698 148 102 5 chr6 11086872 11087331 -178192223 - MER61D LTR ERV1 0 501 1 291 302 116 28 chr6 11087336 11087551 -178192003 + MIR SINE MIR 11 244 -18 2128 127 102 40 chr6 11087604 11088015 -178191539 + L1MA8 LINE L1 3063 3508 -2638 1562 212 0 7 chr6 11088015 11088307 -178191247 + AluJo SINE Alu 1 290 -22 2128 127 102 40 chr6 11088307 11088366 -178191188 + L1MA8 LINE L1 3508 3562 -2584 828 165 0 0 chr6 11088381 11088508 -178191046 - FLAM_C SINE Alu -16 127 1 3527 163 41 17 chr6 11088509 11088848 -178190706 + L1MA8 LINE L1 3552 3881 -2265 1868 162 14 3 chr6 11088848 11089145 -178190409 - AluJb SINE Alu -10 302 3 3527 163 41 17 chr6 11089145 11089469 -178190085 + L1MA8 LINE L1 3881 4231 -1915 626 177 0 139 chr6 11089469 11089627 -178189927 + Tigger1 DNA MER2_type 1 136 -2282 2244 114 10 0 chr6 11089652 11089960 -178189594 - AluSx SINE Alu -1 311 1 830 148 126 16 chr6 11089960 11090000 -178189554 + Tigger1 DNA MER2_type 2216 2250 -168 2222 112 3 3 chr6 11090000 11090305 -178189249 - AluSc SINE Alu -4 305 1 830 148 126 16 chr6 11090305 11090326 -178189228 + Tigger1 DNA MER2_type 2250 2267 -151 841 123 0 46 chr6 11090326 11090456 -178189098 - FLAM_C SINE Alu -9 124 1 830 148 126 16 chr6 11090456 11090576 -178188978 + Tigger1 DNA MER2_type 2267 2418 0 5372 155 41 55 chr6 11090576 11090910 -178188644 + L1MA8 LINE L1 4230 4567 -1724 2069 119 6 26 chr6 11090910 11091222 -178188332 - AluSx SINE Alu -6 306 1 5372 155 41 55 chr6 11091222 11091290 -178188264 + L1MA8 LINE L1 4567 4634 -1657 2077 130 0 7 chr6 11091290 11091590 -178187964 + AluSx SINE Alu 7 304 -8 5372 155 41 55 chr6 11091590 11092195 -178187359 + L1MA8 LINE L1 4634 5246 -1045 2740 176 45 50 chr6 11092195 11092810 -178186744 - LTR9 LTR ERV1 0 612 1 5372 155 41 55 chr6 11092810 11092905 -178186649 + L1MA8 LINE L1 5246 5341 -950 416 36 0 0 chr6 11092905 11092961 -178186593 - L1PB2 LINE L1 -2 6149 6094 216 0 0 0 chr6 11092961 11092985 -178186569 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2141 106 7 0 chr6 11092985 11093268 -178186286 - AluSx SINE Alu -27 285 1 5372 155 41 55 chr6 11093268 11094009 -178185545 + L1MA8 LINE L1 5339 6089 -202 2319 97 7 3 chr6 11094009 11094307 -178185247 + AluSq SINE Alu 1 299 -14 5372 155 41 55 chr6 11094307 11094349 -178185205 + L1MA8 LINE L1 6089 6130 -161 725 127 18 0 chr6 11094349 11094459 -178185095 + HY1 scRNA scRNA 1 112 0 5372 155 41 55 chr6 11094459 11094647 -178184907 + L1MA8 LINE L1 6130 6286 -5 648 169 159 36 chr6 11094675 11094782 -178184772 - Charlie5 DNA MER1_type -15 2570 2478 1446 162 64 72 chr6 11094782 11095159 -178184395 + MLT1A2 LTR MaLR 1 374 0 648 169 159 36 chr6 11095159 11095246 -178184308 - Charlie5 DNA MER1_type -107 2478 2352 332 125 54 0 chr6 11095349 11095405 -178184149 - L1MB4 LINE L1 -1 6179 6121 292 105 0 0 chr6 11095405 11095443 -178184111 - U2 snRNA snRNA -150 38 1 844 159 61 0 chr6 11095445 11095608 -178183946 - L1MB3 LINE L1 -51 6132 5960 510 183 82 0 chr6 11095608 11095718 -178183836 - MER33 DNA MER1_type -274 50 1 888 218 35 5 chr6 11096215 11096412 -178183142 - MLT1B LTR MaLR 0 390 188 622 234 39 0 chr6 11096464 11096592 -178182962 - AluJo SINE Alu -178 134 2 630 200 80 27 chr6 11096603 11096753 -178182801 - MLT1B LTR MaLR -216 158 1 227 290 0 0 chr6 11097183 11097252 -178182302 + L2 LINE L2 2436 2504 -810 954 155 106 48 chr6 11098564 11098771 -178180783 - MER20 DNA MER1_type 0 219 1 601 200 31 15 chr6 11098783 11098913 -178180641 - MER5A DNA MER1_type -5 184 53 961 276 130 30 chr6 11099039 11099477 -178180077 + MLT1L LTR MaLR 40 521 -94 622 227 67 0 chr6 11099609 11099759 -178179795 - MER3 DNA MER1_type 0 209 50 316 234 112 90 chr6 11099819 11100007 -178179547 - MER106A DNA MER1_type -44 192 1 3877 228 49 42 chr6 11100162 11101545 -178178009 + L1PA11 LINE L1 2 2756 -4828 * 17210 133 30 12 chr6 11101544 11103601 -178175953 + L1PA11 LINE L1 3849 5867 -1745 2318 103 3 3 chr6 11103601 11103903 -178175651 + AluSq SINE Alu 1 302 -11 17210 133 30 12 chr6 11103903 11104699 -178174855 + L1PA11 LINE L1 5867 6750 -862 189 0 0 0 chr6 11104699 11104720 -178174834 + (CA)n Simple_repeat Simple_repeat 2 22 0 17210 133 30 12 chr6 11104720 11105015 -178174539 + L1PA11 LINE L1 6750 7038 -574 1360 59 6 6 chr6 11105015 11105184 -178174370 + AluY SINE Alu 130 298 -13 3658 82 80 4 chr6 11105184 11105710 -178173844 + L1PA11 LINE L1 7031 7596 -16 393 311 68 34 chr6 11105711 11105884 -178173670 - L2 LINE L2 -620 2694 2505 3316 144 40 36 chr6 11105884 11106333 -178173221 - MER41B LTR ERV1 0 635 182 1906 143 7 13 chr6 11106333 11106633 -178172921 - AluSx SINE Alu -14 298 1 3316 144 40 36 chr6 11106633 11106816 -178172738 - MER41B LTR ERV1 -453 182 1 393 311 68 34 chr6 11106816 11106935 -178172619 - L2 LINE L2 -809 2505 2392 1653 163 15 7 chr6 11107458 11107728 -178171826 - AluSx SINE Alu -10 302 31 8647 159 44 30 chr6 11107733 11109402 -178170152 - pTR5 LTR ERV1 -2 2436 744 372 160 43 0 chr6 11109425 11109519 -178170035 + CT-rich Low_complexity Low_complexity 1 98 0 2010 113 17 3 chr6 11109524 11109817 -178169737 - AluY SINE Alu -14 297 1 252 236 144 69 chr6 11109922 11110096 -178169458 + MLT1H LTR MaLR 114 300 -249 2314 162 86 54 chr6 11110154 11110275 -178169279 + MER34C LTR ERV1 31 147 -438 2461 75 0 0 chr6 11110275 11110570 -178168984 - AluSg SINE Alu -15 295 1 2314 162 86 54 chr6 11110570 11110986 -178168568 + MER34C LTR ERV1 147 585 0 752 161 121 7 chr6 11111051 11111200 -178168354 + HsTC2 DNA Tc2 228 393 -1505 535 234 54 0 chr6 11111353 11111464 -178168090 - MER58A DNA MER1_type 0 117 1 2174 98 4 0 chr6 11111483 11111801 -178167753 - AluSc SINE Alu 0 322 4 233 264 109 39 chr6 11112232 11112475 -178167079 + MER5C DNA MER1_type 7 323 -1 2239 125 0 0 chr6 11112514 11112810 -178166744 - AluSx SINE Alu -16 296 1 337 281 52 22 chr6 11113497 11113632 -178165922 + MIR3 SINE MIR 11 149 -59 635 178 123 6 chr6 11114333 11114496 -178165058 - MER5A DNA MER1_type -5 184 3 773 169 0 0 chr6 11114548 11114666 -178164888 + AluJo/FLAM SINE Alu 1 118 -184 917 125 31 0 chr6 11114667 11114819 -178164735 - AluSg/x SINE Alu 0 308 153 1573 114 9 5 chr6 11115056 11115276 -178164278 + AluSp SINE Alu 74 294 -19 1165 210 39 0 chr6 11115392 11115621 -178163933 - MER8 DNA MER2_type -1 238 1 4037 178 63 43 chr6 11116841 11116994 -178162560 + L1MB8 LINE L1 4643 4792 -1386 1439 68 111 10 chr6 11116994 11117201 -178162353 - MER30 DNA MER1_type 0 230 3 4037 178 63 43 chr6 11117201 11117566 -178161988 + L1MB8 LINE L1 4792 5148 -1030 2218 114 0 7 chr6 11117566 11117863 -178161691 + AluSx SINE Alu 3 297 -15 2275 118 0 3 chr6 11117866 11118172 -178161382 + AluSx SINE Alu 1 305 -7 4037 178 63 43 chr6 11118172 11118784 -178160770 + L1MB8 LINE L1 5149 5808 -370 2580 47 3 0 chr6 11118784 11119080 -178160474 + AluY SINE Alu 1 297 -14 4037 178 63 43 chr6 11119080 11119407 -178160147 + L1MB8 LINE L1 5808 6127 -51 2273 102 3 3 chr6 11119479 11119783 -178159771 - AluSq SINE Alu -9 304 1 472 255 151 0 chr6 11120517 11120623 -178158931 + MER96 DNA MER1_type? 54 175 0 2149 102 6 49 chr6 11120676 11121001 -178158553 + AluSx SINE Alu 1 311 -1 1283 165 39 103 chr6 11121085 11121395 -178158159 + MLT1D LTR MaLR 148 428 -77 2150 107 0 14 chr6 11121395 11121686 -178157868 + AluSx SINE Alu 1 287 -25 1283 165 39 103 chr6 11121686 11121760 -178157794 + MLT1D LTR MaLR 428 505 0 690 183 0 32 chr6 11122303 11122429 -178157125 - FLAM_A SINE Alu -15 127 6 354 314 98 17 chr6 11122473 11122709 -178156845 + L1MDa LINE L1 1665 1919 -4621 24 0 0 0 chr6 11122781 11122805 -178156749 + AT_rich Low_complexity Low_complexity 1 24 0 277 247 97 32 chr6 11123017 11123171 -178156383 - L1M4 LINE L1 -1956 4190 4027 2197 78 0 81 chr6 11123173 11123494 -178156060 + AluY SINE Alu 1 295 -16 334 319 42 11 chr6 11124155 11124346 -178155208 + L1M4 LINE L1 4900 5096 -1050 1863 145 0 11 chr6 11124411 11124687 -178154867 + AluJo SINE Alu 1 273 -39 391 208 17 8 chr6 11124710 11124830 -178154724 + GA-rich Low_complexity Low_complexity 2 122 0 260 347 65 39 chr6 11124830 11125213 -178154341 - L2 LINE L2 -444 2870 2478 356 364 17 0 chr6 11125223 11125399 -178154155 - L2 LINE L2 -958 2356 2178 564 199 33 17 chr6 11125409 11125543 -178154011 + MER58 DNA MER1_type 12 156 -94 283 335 71 50 chr6 11125543 11125907 -178153647 - L2 LINE L2 -1973 1341 970 432 270 14 20 chr6 11126174 11126322 -178153232 + MIR SINE MIR 113 259 -3 1386 142 44 0 chr6 11126340 11126565 -178152989 - MER46A DNA MER2_type 0 236 2 803 207 0 18 chr6 11126593 11126762 -178152792 - AluSg/x SINE Alu -13 299 134 31 26 0 0 chr6 11127004 11127042 -178152512 + AT_rich Low_complexity Low_complexity 1 38 0 1119 184 19 10 chr6 11127622 11127828 -178151726 + AluJo SINE Alu 1 208 -104 2460 261 44 75 chr6 11127839 11127869 -178151685 + ERVL LTR ERVL 3766 3795 -1969 2155 139 0 0 chr6 11127869 11128179 -178151375 + AluSx SINE Alu 1 310 -2 2460 261 44 75 chr6 11128179 11128864 -178150690 + ERVL LTR ERVL 3795 4446 -1318 2289 101 0 16 chr6 11128864 11129170 -178150384 - AluSx SINE Alu -11 301 1 2460 261 44 75 chr6 11129170 11129415 -178150139 + ERVL LTR ERVL 4446 4697 -1067 356 228 63 0 chr6 11129418 11129497 -178150057 - ERVL LTR ERVL -1912 3852 3769 1975 264 61 22 chr6 11129528 11130167 -178149387 + ERVL LTR ERVL 4719 5382 -382 347 200 156 0 chr6 11130514 11130604 -178148950 + LTR41 LTR ERVL 1 104 -669 2302 80 3 7 chr6 11130689 11130976 -178148578 + AluSx SINE Alu 1 286 -26 244 310 57 64 chr6 11131006 11131324 -178148230 + L1 LINE L1 2503 2822 -3324 378 0 0 0 chr6 11131324 11131366 -178148188 + (CA)n Simple_repeat Simple_repeat 2 43 0 244 310 57 64 chr6 11131366 11131419 -178148135 + L1 LINE L1 2822 2874 -3272 2203 121 3 10 chr6 11131419 11131733 -178147821 + AluSx SINE Alu 1 312 0 244 310 57 64 chr6 11131733 11132328 -178147226 + L1 LINE L1 2874 3463 -2683 310 242 65 61 chr6 11132519 11132616 -178146938 + L1 LINE L1 4185 4280 -1866 2303 101 10 0 chr6 11132616 11132914 -178146640 + AluSx SINE Alu 4 304 -8 310 242 65 61 chr6 11132914 11133047 -178146507 + L1 LINE L1 4280 4416 -1730 361 246 143 6 chr6 11133060 11133235 -178146319 - L1MC5 LINE L1 -33 7928 7730 1750 163 48 0 chr6 11133419 11133708 -178145846 + AluSx SINE Alu 1 303 -9 319 210 210 24 chr6 11133760 11133927 -178145627 + HAL1 LINE L1 1984 2181 -326 422 280 41 46 chr6 11134005 11134223 -178145331 + HAL1 LINE L1 2291 2507 0 2011 134 3 7 chr6 11134229 11134528 -178145026 + AluSx SINE Alu 14 311 -1 222 268 14 28 chr6 11136064 11136135 -178143419 + L2 LINE L2 3203 3272 0 2279 82 3 3 chr6 11136347 11136641 -178142913 - AluSg SINE Alu -16 294 1 1841 93 0 0 chr6 11136751 11136976 -178142578 + AluSq SINE Alu 1 225 -88 198 0 0 0 chr6 11137585 11137607 -178141947 + (A)n Simple_repeat Simple_repeat 1 22 0 1586 144 60 28 chr6 11137918 11138202 -178141352 + AluJo SINE Alu 18 310 -2 25 0 0 0 chr6 11138242 11138267 -178141287 + AT_rich Low_complexity Low_complexity 1 25 0 958 149 60 40 chr6 11138367 11138420 -178141134 - MER3 DNA MER1_type -4 205 155 2177 102 34 14 chr6 11138420 11138715 -178140839 + AluSx SINE Alu 1 301 -11 958 149 60 40 chr6 11138715 11138862 -178140692 - MER3 DNA MER1_type -54 155 1 1935 172 3 0 chr6 11138896 11139199 -178140355 + AluJb SINE Alu 1 304 -8 21 36 0 0 chr6 11139317 11139345 -178140209 + AT_rich Low_complexity Low_complexity 1 28 0 2119 123 0 3 chr6 11140210 11140502 -178139052 - AluSx SINE Alu -21 291 1 831 162 71 0 chr6 11140509 11140663 -178138891 - MLT1A2 LTR MaLR -208 166 2 417 248 29 15 chr6 11141208 11141345 -178138209 + MIR SINE MIR 104 242 -20 180 111 0 0 chr6 11141615 11141642 -178137912 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1851 106 41 123 chr6 11143164 11143531 -178136023 + MER44D DNA MER2_type 1 607 -2 245 269 86 21 chr6 11143614 11143707 -178135847 + L2 LINE L2 2259 2357 -957 2152 114 32 66 chr6 11144655 11145032 -178134522 + THE1B LTR MaLR 1 364 0 232 321 12 12 chr6 11145446 11145530 -178134024 - L2 LINE L2 -55 3258 3175 2390 84 7 3 chr6 11145651 11145948 -178133606 + AluSq SINE Alu 1 298 -15 2349 100 0 10 chr6 11146188 11146498 -178133056 + AluSc SINE Alu 1 307 -2 2318 105 77 6 chr6 11146622 11146985 -178132569 + MLT1B LTR MaLR 1 389 -1 1051 188 22 0 chr6 11147348 11147529 -178132025 + AluJb SINE Alu 114 298 -14 1393 130 19 5 chr6 11148217 11148433 -178131121 - MER20 DNA MER1_type 0 219 1 1663 161 94 11 chr6 11148561 11148847 -178130707 + AluJb SINE Alu 2 311 -1 1866 206 67 28 chr6 11149096 11149558 -178129996 + MLT1D LTR MaLR 26 505 0 1732 171 0 14 chr6 11149587 11149873 -178129681 + AluJo SINE Alu 1 282 -30 845 196 24 6 chr6 11149889 11150057 -178129497 + FRAM SINE Alu 1 165 -11 22 0 0 0 chr6 11150148 11150170 -178129384 + AT_rich Low_complexity Low_complexity 1 22 0 295 191 0 16 chr6 11151123 11151186 -178128368 + MER5A DNA MER1_type 14 75 -114 2372 109 0 0 chr6 11151186 11151497 -178128057 + AluSx SINE Alu 1 311 -1 330 183 28 28 chr6 11151507 11151559 -178127995 + AluJb SINE Alu 1 52 -250 848 70 26 0 chr6 11151559 11151673 -178127881 + MER41A LTR ERV1 1 117 -437 7426 106 150 88 chr6 11151676 11153256 -178126298 + pTR5 LTR ERV1 761 2438 0 2900 91 72 2 chr6 11153260 11153676 -178125878 + MER41A LTR ERV1 109 553 -1 1347 207 4 0 chr6 11153676 11153918 -178125636 + AluJb SINE Alu 50 292 -20 2102 129 10 7 chr6 11154587 11154896 -178124658 - AluSx SINE Alu -2 310 1 308 267 17 75 chr6 11155304 11155424 -178124130 + MIR3 SINE MIR 11 123 -85 749 224 70 8 chr6 11155452 11155693 -178123861 + MER112 DNA MER1_type 1 256 0 276 285 51 29 chr6 11156211 11156348 -178123206 + L1ME LINE L1 5485 5624 -497 352 273 168 6 chr6 11156471 11156632 -178122922 + MIR SINE MIR 64 250 -12 1177 183 9 5 chr6 11156717 11156930 -178122624 - MER20 DNA MER1_type -5 214 1 2317 110 0 0 chr6 11156954 11157262 -178122292 + AluSx SINE Alu 1 308 -4 2595 65 0 0 chr6 11157612 11157918 -178121636 + AluSc SINE Alu 1 306 -3 810 124 22 58 chr6 11158001 11158138 -178121416 - FLAM_C SINE Alu -1 132 1 193 353 72 18 chr6 11159110 11159277 -178120277 + L2 LINE L2 2563 2738 -576 2184 159 12 58 chr6 11159684 11160099 -178119455 + MSTD LTR MaLR 1 396 0 265 358 112 0 chr6 11160116 11160250 -178119304 + Charlie8 DNA MER1_type 9 157 -2260 665 251 29 78 chr6 11160471 11160554 -178119000 + L1ME3A LINE L1 5359 5445 -676 573 246 0 8 chr6 11160554 11160684 -178118870 - FLAM_A SINE Alu 0 133 5 665 251 29 78 chr6 11160684 11160864 -178118690 + L1ME3A LINE L1 5445 5605 -516 2517 69 3 3 chr6 11160864 11161167 -178118387 + AluSp SINE Alu 2 304 -9 665 251 29 78 chr6 11161167 11161224 -178118330 + L1ME3A LINE L1 5605 5663 -458 533 302 45 11 chr6 11161289 11161468 -178118086 + MIR SINE MIR 50 234 -28 302 271 49 49 chr6 11161537 11161672 -178117882 + L1ME3A LINE L1 5740 5877 -244 2319 126 41 60 chr6 11161672 11162047 -178117507 + MSTA LTR MaLR 1 368 -60 1959 95 0 4 chr6 11162047 11162300 -178117254 + AluSx SINE Alu 55 306 -6 2319 126 41 60 chr6 11162300 11162360 -178117194 + MSTA LTR MaLR 368 428 0 302 271 49 49 chr6 11162360 11162427 -178117127 + L1ME3A LINE L1 5876 5942 -179 520 263 114 63 chr6 11162760 11162927 -178116627 + MLT1H LTR MaLR 15 172 -377 2284 96 0 0 chr6 11162927 11163208 -178116346 - AluSx SINE Alu -31 281 1 520 263 114 63 chr6 11163208 11163356 -178116198 + MLT1H LTR MaLR 172 346 -203 441 231 32 102 chr6 11163584 11163731 -178115823 + MER5B DNA MER1_type 1 134 -44 1957 146 23 3 chr6 11163731 11164032 -178115522 + AluJb SINE Alu 1 307 -5 441 231 32 102 chr6 11164032 11164070 -178115484 + MER5B DNA MER1_type 134 173 -5 1294 164 5 18 chr6 11164075 11164294 -178115260 - AluJo SINE Alu -12 300 85 1932 158 13 7 chr6 11164352 11164662 -178114892 - AluJb SINE Alu 0 312 1 2231 83 0 52 chr6 11165044 11165327 -178114227 + AluSc SINE Alu 1 266 -43 359 56 19 0 chr6 11165327 11165381 -178114173 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2231 83 0 52 chr6 11165381 11165423 -178114131 + AluSc SINE Alu 266 309 0 2191 119 3 0 chr6 11165427 11165722 -178113832 + AluSx SINE Alu 2 297 -15 370 230 36 50 chr6 11165722 11165861 -178113693 + MER74B LTR ERVL 420 556 -66 408 268 127 33 chr6 11166870 11167083 -178112471 + L1ME3A LINE L1 5933 6165 -5 2434 84 3 3 chr6 11167271 11167581 -178111973 - AluY SINE Alu -1 310 1 1731 140 0 79 chr6 11168149 11168487 -178111067 + AluJb SINE Alu 1 312 0 648 253 69 16 chr6 11168590 11168835 -178110719 + L1ME1 LINE L1 5892 6149 -17 662 278 57 5 chr6 11170262 11170474 -178109080 - MIR SINE MIR -9 253 31 270 284 59 10 chr6 11170934 11171036 -178108518 - MIR SINE MIR -76 186 80 539 223 0 16 chr6 11171126 11171247 -178108307 - MIR3 SINE MIR -37 171 53 937 120 0 0 chr6 11171479 11171612 -178107942 + FLAM_C SINE Alu 1 133 0 1960 153 7 3 chr6 11171786 11172087 -178107467 + AluSx SINE Alu 1 302 -10 262 283 38 38 chr6 11172157 11172263 -178107291 - MIR SINE MIR -137 125 20 2256 100 3 0 chr6 11172708 11172999 -178106555 - AluSg SINE Alu -18 292 1 284 227 11 34 chr6 11173326 11173414 -178106140 + L1MC5 LINE L1 7830 7915 -46 2435 71 10 7 chr6 11173666 11173974 -178105580 + AluY SINE Alu 1 309 -2 1328 154 5 5 chr6 11174180 11174388 -178105166 + AluJb SINE Alu 85 292 -20 202 308 158 34 chr6 11174650 11174796 -178104758 - MIR SINE MIR -73 189 26 285 167 0 0 chr6 11174819 11174867 -178104687 + MER113 DNA MER1_type? 8 55 -466 867 219 11 0 chr6 11174996 11175183 -178104371 + MER5A DNA MER1_type 1 189 0 478 237 71 30 chr6 11175186 11175355 -178104199 - MIR SINE MIR -58 204 29 1757 179 7 3 chr6 11175609 11175906 -178103648 + AluJo SINE Alu 6 303 -9 2118 112 3 7 chr6 11176200 11176479 -178103075 + AluSc SINE Alu 1 280 -29 262 83 0 0 chr6 11176479 11176515 -178103039 + (CAAA)n Simple_repeat Simple_repeat 1 96 0 208 272 35 155 chr6 11178047 11178337 -178101217 - L2 LINE L2 -72 3200 2946 2455 72 0 0 chr6 11178389 11178681 -178100873 + AluSc SINE Alu 1 292 -17 2009 151 3 3 chr6 11178827 11179125 -178100429 - AluJo SINE Alu -14 298 1 220 125 25 0 chr6 11179799 11179839 -178099715 + (CA)n Simple_repeat Simple_repeat 2 42 0 749 62 44 31 chr6 11179992 11180219 -178099335 + (CA)n Simple_repeat Simple_repeat 1 230 0 194 266 0 75 chr6 11180459 11180553 -178099001 + MIR SINE MIR 51 137 -125 205 119 24 24 chr6 11181024 11181066 -178098488 + (TG)n Simple_repeat Simple_repeat 2 43 0 1012 118 14 0 chr6 11183621 11183765 -178095789 + FRAM SINE Alu 1 146 -30 423 0 0 0 chr6 11183885 11183932 -178095622 + (CA)n Simple_repeat Simple_repeat 1 47 0 3708 185 50 55 chr6 11184058 11185031 -178094523 + LTR5 LTR ERVK 1 969 0 324 288 42 17 chr6 11185783 11185901 -178093653 - MIR3 SINE MIR -23 185 65 368 330 84 14 chr6 11185930 11186145 -178093409 + MIR SINE MIR 33 262 0 456 63 63 40 chr6 11186341 11186515 -178093039 + (TA)n Simple_repeat Simple_repeat 2 179 0 475 149 50 37 chr6 11186515 11186676 -178092878 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 373 133 55 12 chr6 11186676 11186841 -178092713 + (TA)n Simple_repeat Simple_repeat 1 172 0 399 171 18 9 chr6 11186892 11187003 -178092551 + (TA)n Simple_repeat Simple_repeat 2 113 0 2285 110 3 0 chr6 11187395 11187705 -178091849 + AluSp SINE Alu 1 311 -2 270 325 0 0 chr6 11188703 11188783 -178090771 - Charlie8 DNA MER1_type -2221 196 117 2362 109 0 0 chr6 11189119 11189431 -178090123 - AluSx SINE Alu 0 312 1 243 297 47 7 chr6 11189776 11189924 -178089630 + L1ME LINE L1 5279 5432 -730 1183 104 0 29 chr6 11189936 11190109 -178089445 - MER54A LTR ERVL 0 901 734 264 200 64 129 chr6 11190188 11190219 -178089335 + L2 LINE L2 3177 3208 -105 2465 69 7 0 chr6 11190219 11190522 -178089032 + AluY SINE Alu 1 305 -6 264 200 64 129 chr6 11190522 11190557 -178088997 + L2 LINE L2 3208 3244 -69 2050 110 33 20 chr6 11190557 11190856 -178088698 - AluSx SINE Alu -9 303 1 264 200 64 129 chr6 11190856 11190928 -178088626 + L2 LINE L2 3244 3307 -6 791 106 24 8 chr6 11190969 11191092 -178088462 - MER6 DNA MER2_type -258 607 483 2298 119 0 0 chr6 11191124 11191435 -178088119 + AluSq SINE Alu 1 311 -2 1485 175 98 7 chr6 11191855 11192024 -178087530 - AluJo SINE Alu 0 312 160 243 61 0 0 chr6 11192024 11192057 -178087497 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1485 175 98 7 chr6 11192057 11192173 -178087381 - AluJo SINE Alu -152 160 1 975 183 103 18 chr6 11192571 11192795 -178086759 - MER58B DNA MER1_type -15 326 84 968 70 0 0 chr6 11192795 11192910 -178086644 + AluSq SINE Alu 1 115 -198 2736 58 7 21 chr6 11192910 11193409 -178086145 - LTR7 LTR ERV1 -2 448 1 1418 107 0 10 chr6 11193409 11193606 -178085948 + AluSq SINE Alu 109 303 -10 353 227 107 0 chr6 11194272 11194347 -178085207 - MER58B DNA MER1_type -258 83 1 308 268 71 9 chr6 11194545 11194657 -178084897 + MIR SINE MIR 92 210 -52 442 307 0 43 chr6 11194784 11194947 -178084607 + MIR SINE MIR 94 249 -13 232 323 81 16 chr6 11195258 11195382 -178084172 + MIR SINE MIR 9 140 -122 2437 72 0 34 chr6 11196203 11196523 -178083031 - AluY SINE Alu -2 309 1 575 216 18 0 chr6 11196825 11196936 -178082618 + MER81 DNA DNA 2 114 0 2184 105 0 17 chr6 11197312 11197606 -178081948 + AluSq SINE Alu 1 289 -24 246 282 45 18 chr6 11197837 11197947 -178081607 + MIR3 SINE MIR 96 208 0 1403 175 130 0 chr6 11198731 11199000 -178080554 + AluJb SINE Alu 2 305 -7 645 126 42 7 chr6 11199000 11199143 -178080411 + GA-rich Low_complexity Low_complexity 1 148 0 886 185 7 0 chr6 11199479 11199630 -178079924 + FRAM SINE Alu 1 152 -14 351 0 0 0 chr6 11199690 11199729 -178079825 + (TG)n Simple_repeat Simple_repeat 1 39 0 1614 203 10 0 chr6 11201492 11201787 -178077767 - AluJo SINE Alu -14 298 1 810 134 0 0 chr6 11201803 11201915 -178077639 - FLAM_C SINE Alu -18 125 14 1751 183 14 0 chr6 11202371 11202656 -178076898 + AluJb SINE Alu 1 289 -23 2368 138 82 30 chr6 11203199 11203625 -178075929 - MER83 LTR ERV1 0 448 1 672 297 127 13 chr6 11203725 11204181 -178075373 + L2 LINE L2 2794 3309 -4 730 228 60 5 chr6 11204212 11204396 -178075158 - MIR SINE MIR -67 195 2 185 337 12 12 chr6 11204428 11204511 -178075043 - MIR SINE MIR -172 90 8 270 263 50 10 chr6 11204703 11204802 -178074752 + MIR SINE MIR 93 195 -67 288 0 0 0 chr6 11205155 11205187 -178074367 + (TA)n Simple_repeat Simple_repeat 2 33 0 2351 109 0 0 chr6 11205193 11205505 -178074049 - AluSx SINE Alu 0 312 1 266 228 114 0 chr6 11205522 11205601 -178073953 + MIR SINE MIR 118 205 -57 1814 133 15 0 chr6 11205794 11206057 -178073497 - AluSx SINE Alu -14 298 32 246 32 0 0 chr6 11206277 11206308 -178073246 + (T)n Simple_repeat Simple_repeat 1 31 0 1295 158 5 0 chr6 11206327 11206529 -178073025 - AluJo SINE Alu -109 203 1 372 297 113 15 chr6 11206529 11206724 -178072830 + MLT1K LTR MaLR 211 424 -164 289 260 0 0 chr6 11206733 11206810 -178072744 - MER81 DNA DNA -37 77 1 504 259 36 18 chr6 11206814 11206980 -178072574 + MLT1K LTR MaLR 413 581 -7 2351 95 13 0 chr6 11207503 11207807 -178071747 + AluSp SINE Alu 1 308 -5 2150 103 0 7 chr6 11208574 11208866 -178070688 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr6 11210515 11210551 -178069003 + AT_rich Low_complexity Low_complexity 1 36 0 525 276 226 22 chr6 11210674 11211036 -178068518 - L2 LINE L2 0 3313 2878 1739 169 0 13 chr6 11211173 11211474 -178068080 + AluJo SINE Alu 1 297 -15 2079 133 0 0 chr6 11215059 11215353 -178064201 - AluJb SINE Alu -18 294 1 1628 162 75 12 chr6 11216243 11216564 -178062990 + MER2 DNA MER2_type 1 341 -3 242 220 0 0 chr6 11216564 11216614 -178062940 + MER2 DNA MER2_type 296 345 0 22 0 0 0 chr6 11216644 11216666 -178062888 + AT_rich Low_complexity Low_complexity 1 22 0 2411 99 0 3 chr6 11216906 11217220 -178062334 + AluSq SINE Alu 1 313 0 2197 115 0 0 chr6 11217222 11217517 -178062037 + AluSg1 SINE Alu 1 295 -14 49 0 0 0 chr6 11217517 11217566 -178061988 + AT_rich Low_complexity Low_complexity 1 49 0 379 270 71 16 chr6 11218062 11218188 -178061366 - MER5A DNA MER1_type -1 188 56 1504 181 41 11 chr6 11218188 11218458 -178061096 + AluJb SINE Alu 7 284 -28 197 297 94 0 chr6 11218471 11218535 -178061019 - MER5A DNA MER1_type -116 73 4 1996 114 64 0 chr6 11218629 11218910 -178060644 + AluSq SINE Alu 1 299 -14 1028 113 0 0 chr6 11219260 11219401 -178060153 + AluSg/x SINE Alu 168 308 -4 1016 244 29 21 chr6 11219429 11219708 -178059846 + L1ME3A LINE L1 5479 5759 -411 811 132 5 137 chr6 11219718 11219908 -178059646 - MER20 DNA MER1_type 0 219 55 2174 100 10 3 chr6 11219909 11220199 -178059355 + AluSg SINE Alu 2 293 -17 679 223 39 18 chr6 11220224 11220452 -178059102 + L1ME3A LINE L1 5802 5942 -228 738 132 0 83 chr6 11220703 11220847 -178058707 - FRAM SINE Alu -5 171 40 3180 219 191 18 chr6 11220847 11221927 -178057627 + L1MC4 LINE L1 6775 8041 -1 268 250 20 30 chr6 11221909 11222009 -178057545 + L1MB7 LINE L1 5033 5131 -1015 * 26 0 0 0 chr6 11222208 11222234 -178057320 + AT_rich Low_complexity Low_complexity 1 26 0 2228 111 0 7 chr6 11222288 11222586 -178056968 - AluSg SINE Alu -12 298 3 617 193 0 18 chr6 11222587 11222701 -178056853 + Tigger2 DNA MER2_type 2597 2708 -10 2032 113 3 7 chr6 11223983 11224303 -178055251 - AluSq SINE Alu 0 319 1 256 74 0 37 chr6 11224305 11224359 -178055195 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2150 87 4 7 chr6 11224359 11224635 -178054919 - AluSg SINE Alu -28 282 8 2331 86 7 0 chr6 11224642 11224933 -178054621 - AluSx SINE Alu -19 293 1 264 208 56 28 chr6 11225091 11225163 -178054391 + MIR SINE MIR 58 131 -131 3328 181 79 28 chr6 11225216 11225474 -178054080 + L1MB7 LINE L1 5348 5591 -593 1834 128 53 18 chr6 11225474 11225756 -178053798 + AluSx SINE Alu 1 292 -20 2584 73 0 6 chr6 11225757 11226071 -178053483 + AluSq SINE Alu 1 312 -1 3328 181 79 28 chr6 11226071 11226591 -178052963 + L1MB7 LINE L1 5590 6168 -16 3682 86 48 11 chr6 11227422 11227959 -178051595 + L1PA11 LINE L1 5616 6172 -2 334 127 28 14 chr6 11228798 11228869 -178050685 + CT-rich Low_complexity Low_complexity 1 72 0 1716 144 34 7 chr6 11228869 11229161 -178050393 - AluJb SINE Alu -12 300 1 417 278 127 58 chr6 11229325 11229476 -178050078 - MIR SINE MIR -12 250 80 2303 91 3 0 chr6 11229476 11229784 -178049770 + AluSp SINE Alu 1 309 -4 417 278 127 58 chr6 11229784 11229837 -178049717 - MIR SINE MIR -182 80 32 1824 136 4 191 chr6 11230477 11230507 -178049047 + MER47B DNA MER2_type 1 35 -2288 180 0 0 0 chr6 11230507 11230527 -178049027 + (TA)n Simple_repeat Simple_repeat 2 21 0 2350 87 0 3 chr6 11230527 11230839 -178048715 - AluSx SINE Alu -1 311 1 1824 136 4 191 chr6 11230839 11231235 -178048319 + MER47B DNA MER2_type 34 319 -2004 2255 93 10 0 chr6 11231235 11231545 -178048009 - AluSq SINE Alu 0 313 1 1824 136 4 191 chr6 11231545 11231630 -178047924 + MER47B DNA MER2_type 319 418 0 1626 98 9 0 chr6 11231900 11232124 -178047430 + AluSq SINE Alu 1 226 -87 1035 83 0 0 chr6 11232124 11232257 -178047297 + AluSg/x SINE Alu 165 297 -15 2180 91 10 0 chr6 11232310 11232606 -178046948 + AluY SINE Alu 1 299 -12 2283 96 0 0 chr6 11233759 11234060 -178045494 - AluSx SINE Alu -9 303 3 992 180 20 10 chr6 11234097 11234297 -178045257 - AluJo SINE Alu -24 288 87 2056 112 20 0 chr6 11234528 11234822 -178044732 + AluSx SINE Alu 1 300 -12 2120 108 0 40 chr6 11235134 11235457 -178044097 - AluSx SINE Alu -1 311 2 546 150 0 79 chr6 11235457 11235584 -178043970 + Charlie5 DNA MER1_type 2508 2624 0 2167 99 3 10 chr6 11235635 11235939 -178043615 - AluSx SINE Alu -10 302 1 189 74 0 0 chr6 11236029 11236056 -178043498 + (A)n Simple_repeat Simple_repeat 1 27 0 903 156 31 145 chr6 11236237 11236526 -178043028 + AluJo SINE Alu 43 298 -14 274 185 19 0 chr6 11236761 11236815 -178042739 - L3 LINE CR1 -2 1575 1521 490 310 81 66 chr6 11236916 11237264 -178042290 - L3 LINE CR1 -237 1340 988 442 265 166 7 chr6 11237408 11237559 -178041995 - MER5B DNA MER1_type 0 178 4 298 266 73 62 chr6 11237777 11237906 -178041648 + MIR3 SINE MIR 20 158 -50 2107 81 46 3 chr6 11237906 11238191 -178041363 - AluSg SINE Alu -13 297 1 298 266 73 62 chr6 11238191 11238207 -178041347 + MIR3 SINE MIR 158 172 -36 183 42 0 0 chr6 11238215 11238239 -178041315 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 864 119 0 0 chr6 11238257 11238375 -178041179 - FLAM_C SINE Alu -15 118 1 1957 116 0 11 chr6 11238579 11238884 -178040670 - AluSx SINE Alu 0 302 1 197 275 50 0 chr6 11241082 11241162 -178038392 + MIR SINE MIR 124 207 -55 2225 95 0 3 chr6 11241512 11241816 -178037738 - AluSq SINE Alu -4 309 7 24 32 0 0 chr6 11241977 11242008 -178037546 + AT_rich Low_complexity Low_complexity 1 31 0 644 182 41 8 chr6 11242009 11242130 -178037424 - FLAM_C SINE Alu -18 125 1 853 121 15 8 chr6 11242261 11242393 -178037161 + FLAM_C SINE Alu 1 133 0 1103 152 0 45 chr6 11244095 11244293 -178035261 - AluSp SINE Alu 0 313 125 1717 58 4 9 chr6 11244486 11244712 -178034842 + AluSp SINE Alu 75 299 -14 2556 33 0 3 chr6 11244970 11245273 -178034281 - AluY SINE Alu -9 302 1 2073 97 3 22 chr6 11245515 11245826 -178033728 - AluSq SINE Alu -8 305 1 1845 126 43 0 chr6 11246785 11247062 -178032492 + AluSx SINE Alu 10 298 -14 276 231 62 15 chr6 11247340 11247405 -178032149 - L2 LINE L2 -4 3309 3242 264 240 132 66 chr6 11248188 11248309 -178031245 + MIR3 SINE MIR 2 130 -78 816 150 8 8 chr6 11248464 11248597 -178030957 + FLAM_A SINE Alu 1 133 0 1958 131 24 0 chr6 11248676 11248974 -178030580 - AluSx SINE Alu -7 305 1 2218 90 3 10 chr6 11248988 11249300 -178030254 - AluSp SINE Alu 0 313 4 2102 108 13 3 chr6 11249307 11249612 -178029942 - AluSx SINE Alu -4 308 1 315 228 67 40 chr6 11249643 11249792 -178029762 + L1ME4a LINE L1 5968 6120 -1 1991 102 14 10 chr6 11250515 11250810 -178028744 + AluSx SINE Alu 1 296 -16 312 226 157 57 chr6 11250843 11251002 -178028552 + L1ME4a LINE L1 5525 5699 -422 2256 65 3 3 chr6 11251101 11251394 -178028160 + AluY SINE Alu 1 293 -18 1555 162 0 4 chr6 11251394 11251666 -178027888 + AluJb SINE Alu 42 312 0 239 139 0 0 chr6 11251681 11251717 -178027837 + L1ME4a LINE L1 5761 5796 -446 239 272 109 7 chr6 11251835 11251982 -178027572 + L1ME4a LINE L1 5959 6120 -1 2318 67 0 7 chr6 11252181 11252481 -178027073 - AluY SINE Alu -13 298 1 2357 76 3 0 chr6 11252710 11253013 -178026541 + AluSp SINE Alu 1 304 -9 2200 114 58 15 chr6 11253046 11253442 -178026112 + L1MA3 LINE L1 5893 6305 0 23 0 0 0 chr6 11253520 11253543 -178026011 + AT_rich Low_complexity Low_complexity 1 23 0 2006 123 0 0 chr6 11253553 11253837 -178025717 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 11253842 11253863 -178025691 + AT_rich Low_complexity Low_complexity 1 21 0 289 299 92 38 chr6 11255560 11255744 -178023810 - MIR SINE MIR -20 242 49 641 214 104 0 chr6 11255746 11255900 -178023654 - AluJ SINE Alu -11 301 132 2279 93 0 0 chr6 11255910 11256211 -178023343 - AluSq SINE Alu -12 301 1 2106 89 7 0 chr6 11256349 11256661 -178022893 + AluSp SINE Alu 1 314 0 780 143 42 0 chr6 11256666 11256785 -178022769 - AluJ SINE Alu -187 125 2 288 333 116 21 chr6 11256817 11257006 -178022548 + L2 LINE L2 2953 3159 -113 2301 152 47 19 chr6 11257040 11257467 -178022087 - L1MA6 LINE L1 0 6300 5862 1576 209 30 6 chr6 11257568 11257898 -178021656 + MER58B DNA MER1_type 1 338 -3 692 308 71 5 chr6 11258046 11258270 -178021284 + MIR SINE MIR 21 259 -3 2078 127 0 0 chr6 11258967 11259266 -178020288 - AluSx SINE Alu -13 299 1 2366 137 6 3 chr6 11259349 11259708 -178019846 + MER46B DNA MER2_type 2 236 0 27 0 0 0 chr6 11259750 11259777 -178019777 + AT_rich Low_complexity Low_complexity 1 27 0 269 285 122 16 chr6 11259810 11259933 -178019621 - MIR3 SINE MIR -17 191 56 307 53 0 0 chr6 11260449 11260487 -178019067 - tRNA-Gln-CAG tRNA tRNA -37 38 1 2138 108 0 7 chr6 11260720 11261027 -178018527 - AluSx SINE Alu -3 309 5 1567 168 20 7 chr6 11261042 11261339 -178018215 - L1MB2 LINE L1 -7 6164 5864 1167 166 5 0 chr6 11261517 11261710 -178017844 - MER20 DNA MER1_type 0 219 26 977 184 0 22 chr6 11261792 11261971 -178017583 + FAM SINE Alu 1 175 0 186 179 0 0 chr6 11261984 11262012 -178017542 + L2 LINE L2 3224 3251 -21 346 326 17 65 chr6 11262095 11262336 -178017218 + MIR SINE MIR 12 238 -24 1000 212 37 8 chr6 11262360 11262601 -178016953 - L1MB7 LINE L1 -9 6175 5928 239 53 0 26 chr6 11262764 11262802 -178016752 + (TA)n Simple_repeat Simple_repeat 1 37 0 2287 105 0 0 chr6 11262802 11263106 -178016448 - AluSx SINE Alu -8 304 1 655 216 0 8 chr6 11263562 11263687 -178015867 - FLAM_C SINE Alu -18 125 2 2133 111 0 0 chr6 11263791 11264088 -178015466 - AluSx SINE Alu -15 297 1 406 227 9 18 chr6 11264121 11264231 -178015323 + L1ME4a LINE L1 5946 6054 -67 326 298 48 0 chr6 11264880 11264984 -178014570 - MER103 DNA DNA -45 121 13 864 149 6 43 chr6 11264995 11265156 -178014398 - AluJb SINE Alu -15 297 143 1911 147 0 7 chr6 11265249 11265548 -178014006 - AluJb SINE Alu -15 297 1 1696 264 27 10 chr6 11266234 11266719 -178012835 + L1ME2 LINE L1 124 616 -5780 434 203 16 47 chr6 11266771 11266827 -178012727 + L1ME2 LINE L1 2704 2760 -3455 2066 122 3 0 chr6 11266827 11267131 -178012423 + AluSx SINE Alu 1 305 -7 434 203 16 47 chr6 11267131 11267202 -178012352 + L1ME2 LINE L1 2760 2827 -3388 696 129 54 82 chr6 11267231 11267378 -178012176 + MSTB2 LTR MaLR 260 402 -55 1521 242 14 16 chr6 11267381 11267819 -178011735 + L1ME2 LINE L1 2843 3279 -2936 520 54 68 0 chr6 11267834 11267908 -178011646 - L1PA11 LINE L1 -1 6173 6095 1046 268 37 9 chr6 11267950 11268271 -178011283 + L1ME2 LINE L1 5381 5710 -525 383 237 32 0 chr6 11268271 11268364 -178011190 + MER82 DNA MER2_type 1 96 -557 274 164 36 0 chr6 11268494 11268549 -178011005 - L1M4 LINE L1 -3316 2830 2774 2126 91 7 16 chr6 11268664 11268971 -178010583 - AluSx SINE Alu -8 304 1 784 244 39 19 chr6 11268998 11269203 -178010351 + MER82 DNA MER2_type 444 652 -1 1264 246 48 50 chr6 11269204 11269297 -178010257 + L1ME2 LINE L1 5712 5804 -429 1406 145 130 0 chr6 11269297 11269559 -178009995 + AluSg1 SINE Alu 1 296 -13 1264 246 48 50 chr6 11269559 11269982 -178009572 + L1ME2 LINE L1 5804 6227 -6 1956 127 0 10 chr6 11270061 11270361 -178009193 + AluSx SINE Alu 1 297 -15 2311 94 0 0 chr6 11270399 11270708 -178008846 + AluY SINE Alu 1 309 -2 901 253 42 4 chr6 11270828 11271065 -178008489 - MIR SINE MIR 0 262 17 2026 120 10 0 chr6 11271085 11271386 -178008168 - AluSg SINE Alu -6 304 1 406 319 28 7 chr6 11271415 11271559 -178007995 - MIR SINE MIR -4 258 112 2879 215 25 25 chr6 11271810 11272494 -178007060 + L1MD3 LINE L1 7312 7995 0 2221 99 3 0 chr6 11273247 11273549 -178006005 + AluSq SINE Alu 1 303 -10 207 235 0 0 chr6 11273707 11273758 -178005796 + (CA)n Simple_repeat Simple_repeat 2 52 0 1707 127 21 25 chr6 11275068 11275351 -178004203 - AluSx SINE Alu -30 282 1 560 210 57 16 chr6 11275712 11275836 -178003718 + AluJo/FLAM SINE Alu 3 131 -171 1254 210 15 7 chr6 11275838 11276110 -178003444 + AluSq SINE Alu 1 274 -39 759 192 58 0 chr6 11276126 11276282 -178003272 + AluSq SINE Alu 134 298 -15 683 210 128 63 chr6 11276283 11276603 -178002951 - LTR12 LTR ERV1 -24 690 237 1771 204 275 33 chr6 11276756 11277595 -178001959 - pTR5 LTR ERV1 -266 2172 744 326 292 102 15 chr6 11277599 11277731 -178001823 - MIR SINE MIR -69 139 2 2217 100 0 0 chr6 11277953 11278252 -178001302 + AluSx SINE Alu 1 299 -13 1917 141 3 95 chr6 11278660 11279029 -178000525 - MER1B DNA MER1_type -1 336 2 271 307 99 61 chr6 11279544 11279677 -177999877 + MIR SINE MIR 2 147 -115 2328 141 15 15 chr6 11279677 11280067 -177999487 + MLT1B LTR MaLR 1 390 0 271 307 99 61 chr6 11280067 11280145 -177999409 + MIR SINE MIR 147 221 -41 281 198 23 23 chr6 11280313 11280399 -177999155 + (TA)n Simple_repeat Simple_repeat 1 86 0 3749 169 119 39 chr6 11280785 11282156 -177997398 + pTR5 LTR ERV1 743 2438 0 1510 150 59 7 chr6 11282255 11282542 -177997012 - AluSq SINE Alu -11 302 1 544 228 140 0 chr6 11282542 11282678 -177996876 + AluJo SINE Alu 117 271 -41 1014 198 32 40 chr6 11282689 11282936 -177996618 - MLT2B1 LTR ERVL -274 246 2 2117 95 17 7 chr6 11282957 11283251 -177996303 + AluSx SINE Alu 2 298 -14 2537 221 104 7 chr6 11283725 11284423 -177995131 + L1MD2 LINE L1 5589 6358 -1 815 174 12 12 chr6 11284435 11284596 -177994958 + FRAM SINE Alu 1 161 -15 187 264 125 28 chr6 11284597 11284669 -177994885 - MIR SINE MIR -111 151 73 1910 99 16 60 chr6 11284691 11285005 -177994549 - AluSx SINE Alu -8 304 5 751 192 83 19 chr6 11285568 11285724 -177993830 - AluJ SINE Alu -5 307 142 5360 195 69 76 chr6 11285724 11287306 -177992248 + pTR5 LTR ERV1 31 558 -156 349 318 39 8 chr6 11287321 11287450 -177992104 - AluJ SINE Alu -159 143 11 188 307 176 39 chr6 11287818 11287971 -177991583 - MIR SINE MIR -61 201 28 2113 99 3 7 chr6 11288024 11288326 -177991228 + AluY SINE Alu 1 301 -10 5698 100 27 17 chr6 11288375 11289197 -177990357 + L1PA11 LINE L1 5343 6172 -2 1551 136 97 13 chr6 11289221 11289530 -177990024 - MER46B DNA MER2_type 0 236 27 2173 94 0 10 chr6 11289530 11289829 -177989725 - AluSx SINE Alu -16 296 1 243 156 67 0 chr6 11289980 11290025 -177989529 - MER58 DNA MER1_type 0 2420 2373 1016 112 0 20 chr6 11290030 11290182 -177989372 - L1PA8 LINE L1 -3 6169 6021 605 284 70 96 chr6 11290832 11291210 -177988344 - ERVL LTR ERVL -2270 2726 2361 1972 119 7 7 chr6 11291210 11291504 -177988050 + AluSx SINE Alu 1 294 -18 605 284 70 96 chr6 11291504 11291582 -177987972 - ERVL LTR ERVL -2635 2361 2282 1734 301 50 26 chr6 11291662 11292792 -177986762 - ERVL LTR ERVL -2723 2273 1057 1284 231 104 27 chr6 11292792 11293204 -177986350 - MLT1C LTR MaLR 0 467 24 2336 289 48 11 chr6 11293261 11293991 -177985563 - ERVL LTR ERVL -3953 1043 287 776 129 8 0 chr6 11294511 11294635 -177984919 - L1M3 LINE L1 -730 5450 5326 647 163 8 47 chr6 11294635 11294663 -177984891 - FLAM_A SINE Alu -183 128 100 2282 113 80 0 chr6 11294663 11295000 -177984554 - THE1B LTR MaLR 0 364 1 647 163 8 47 chr6 11295000 11295100 -177984454 - FLAM_A SINE Alu -211 100 5 2489 175 6 219 chr6 11295100 11295311 -177984243 - L1M3 LINE L1 -813 5333 5079 1705 191 0 3 chr6 11295311 11295610 -177983944 + AluJb SINE Alu 1 298 -14 2489 175 6 219 chr6 11295610 11296078 -177983476 - L1M3 LINE L1 -1067 5079 4912 627 80 50 50 chr6 11296078 11296178 -177983376 - AluSg/x SINE Alu -22 287 188 2489 175 6 219 chr6 11296178 11296632 -177982922 - L1M3 LINE L1 -1234 4912 4363 351 98 0 0 chr6 11296832 11296893 -177982661 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 672 358 8 0 chr6 11297202 11297459 -177982095 + MERVL LTR ERVL 4180 4438 -1047 360 304 47 28 chr6 11297736 11297950 -177981604 + MERVL LTR ERVL 4810 5027 -458 268 289 103 0 chr6 11298415 11298512 -177981042 + LTR40a LTR ERVL 407 513 -6 545 353 40 15 chr6 11298842 11299114 -177980440 - ERVL LTR ERVL -4711 1053 775 1542 216 214 55 chr6 11299448 11299943 -177979611 + MLT1E1 LTR MaLR 1 598 -56 1987 118 14 0 chr6 11299943 11300230 -177979324 - AluSx SINE Alu -17 295 5 1542 216 214 55 chr6 11300230 11300298 -177979256 + MLT1E1 LTR MaLR 598 654 0 734 195 57 44 chr6 11300517 11300602 -177978952 - FAM SINE Alu -150 171 89 2185 141 102 8 chr6 11300602 11300652 -177978902 - MSTA LTR MaLR 0 428 384 204 40 0 0 chr6 11300652 11300677 -177978877 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr6 11300676 11300704 -177978850 + (GA)n Simple_repeat Simple_repeat 2 29 0 2185 141 102 8 chr6 11300677 11301044 -177978510 - MSTA LTR MaLR -44 384 1 734 195 57 44 chr6 11301044 11301117 -177978437 - FAM SINE Alu -232 89 11 1881 123 4 0 chr6 11301135 11301411 -177978143 - AluSx SINE Alu -15 297 21 362 246 94 94 chr6 11301464 11301716 -177977838 - LTR50 LTR ERVL -7 788 534 1489 216 56 50 chr6 11301716 11301828 -177977726 + MLT1C LTR MaLR 3 113 -354 2180 72 0 23 chr6 11301828 11302133 -177977421 + AluSc SINE Alu 1 298 -11 1489 216 56 50 chr6 11302133 11302482 -177977072 + MLT1C LTR MaLR 113 467 0 362 246 94 94 chr6 11302482 11302538 -177977016 - LTR50 LTR ERVL -260 535 480 1889 116 11 4 chr6 11303513 11303821 -177975733 - AluSx SINE Alu 0 316 7 2352 238 176 16 chr6 11303823 11304731 -177974823 - L2 LINE L2 -1929 1385 333 374 65 0 0 chr6 11304875 11304921 -177974633 - MLT1B LTR MaLR -46 344 299 1403 264 109 75 chr6 11304923 11305344 -177974210 + L2 LINE L2 1407 1812 -1502 1815 115 66 3 chr6 11305344 11305632 -177973922 - AluSg SINE Alu -2 308 3 1801 135 14 7 chr6 11305636 11305925 -177973629 - AluJb SINE Alu -20 292 2 1403 264 109 75 chr6 11305925 11306169 -177973385 + L2 LINE L2 1814 2100 -1214 1249 199 25 0 chr6 11306169 11306410 -177973144 + MLT1A1 LTR MaLR 116 362 -3 279 235 49 59 chr6 11306411 11306513 -177973041 + L2 LINE L2 2127 2227 -1087 1020 150 0 17 chr6 11306593 11306766 -177972788 - AluJo SINE Alu -14 298 129 904 71 11 44 chr6 11306766 11306854 -177972700 + (TTCC)n Simple_repeat Simple_repeat 1 262 0 904 71 11 44 chr6 11306854 11307037 -177972517 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 618 236 24 0 chr6 11307175 11307302 -177972252 - AluJo SINE Alu -172 130 1 328 284 161 7 chr6 11307405 11307560 -177971994 + L2 LINE L2 3135 3313 0 1946 125 10 10 chr6 11307662 11307789 -177971765 + AluSq SINE Alu 1 127 -186 186 43 0 0 chr6 11307789 11307812 -177971742 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1946 125 10 10 chr6 11307812 11307981 -177971573 + AluSq SINE Alu 126 297 -16 286 243 0 0 chr6 11308223 11308297 -177971257 - L1MC4 LINE L1 0 8042 7969 694 239 38 129 chr6 11309341 11309454 -177970100 - L1MC4 LINE L1 -259 7783 7661 5145 20 0 17 chr6 11309454 11310056 -177969498 + L1PA4 LINE L1 5561 6152 -3 694 239 38 129 chr6 11310056 11310415 -177969139 - L1MC4 LINE L1 -381 7661 7354 1132 196 222 71 chr6 11310764 11311187 -177968367 + MLT1D LTR MaLR 19 505 0 321 256 16 189 chr6 11311215 11311293 -177968261 + MIR SINE MIR 41 131 -131 1616 122 16 8 chr6 11311293 11311548 -177968006 - AluSg SINE Alu -10 300 44 321 256 16 189 chr6 11311548 11311618 -177967936 + MIR SINE MIR 131 211 -51 387 0 0 0 chr6 11311618 11311661 -177967893 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1641 161 0 37 chr6 11311663 11311961 -177967593 - AluJo SINE Alu -25 287 1 321 256 16 189 chr6 11311961 11312062 -177967492 + MIR SINE MIR 212 250 -12 394 241 23 0 chr6 11312127 11312214 -177967340 - L2 LINE L2 -97 3216 3128 1779 142 28 0 chr6 11312226 11312514 -177967040 - AluJb SINE Alu -16 296 1 1567 142 19 61 chr6 11313350 11313475 -177966079 + AluJo SINE Alu 1 130 -182 2184 95 0 0 chr6 11313475 11313769 -177965785 - AluSc SINE Alu -14 295 2 1567 142 19 61 chr6 11313769 11313953 -177965601 + AluJo SINE Alu 130 297 -15 1570 153 0 39 chr6 11314018 11314327 -177965227 - AluJo SINE Alu 0 309 12 2168 91 0 7 chr6 11314397 11314706 -177964848 + AluSg SINE Alu 1 307 -3 1801 125 43 0 chr6 11314806 11315085 -177964469 + AluJo SINE Alu 1 291 -21 2124 119 0 3 chr6 11315432 11315744 -177963810 - AluSx SINE Alu -1 311 1 252 296 0 0 chr6 11316057 11316182 -177963372 + (CA)n Simple_repeat Simple_repeat 1 125 0 4279 183 58 25 chr6 11317125 11317958 -177961596 - MER21B LTR ERV1 -3 860 1 286 274 113 9 chr6 11318578 11318684 -177960870 - L1ME LINE L1 -510 5611 5495 35 0 0 0 chr6 11318856 11318891 -177960663 + AT_rich Low_complexity Low_complexity 1 35 0 2311 98 9 0 chr6 11318891 11319209 -177960345 - LTR8 LTR ERV1 -104 587 267 279 271 65 77 chr6 11319209 11319519 -177960035 + L1MC4a LINE L1 5709 6016 -105 1726 166 0 14 chr6 11319538 11319822 -177959732 + AluJo SINE Alu 12 291 -21 623 164 9 0 chr6 11320015 11320125 -177959429 - L1MA9 LINE L1 0 6312 6202 340 154 0 39 chr6 11320148 11320226 -177959328 - L1MA9 LINE L1 -186 6126 6052 576 237 147 6 chr6 11320275 11320431 -177959123 - MER5A DNA MER1_type 0 189 12 2151 156 11 8 chr6 11321751 11322111 -177957443 + MLT1A1 LTR MaLR 1 361 -4 939 174 0 0 chr6 11322175 11322347 -177957207 + AluJb SINE Alu 133 304 -8 195 42 0 0 chr6 11322438 11322462 -177957092 + (A)n Simple_repeat Simple_repeat 1 24 0 354 241 42 125 chr6 11322501 11322717 -177956837 + L1MC4 LINE L1 7817 8014 -28 697 133 9 0 chr6 11323050 11323155 -177956399 - AluSp/q SINE Alu -20 293 188 1032 152 22 11 chr6 11323155 11323333 -177956221 + AluSg/x SINE Alu 114 293 -19 1029 100 0 0 chr6 11323418 11323568 -177955986 + AluSg/x SINE Alu 156 305 -7 203 244 0 0 chr6 11323955 11324000 -177955554 - L2 LINE L2 -1 3312 3268 210 261 0 0 chr6 11324292 11324338 -177955216 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 1995 98 0 0 chr6 11324342 11324607 -177954947 - AluSx SINE Alu -11 301 37 1532 219 51 91 chr6 11324724 11325087 -177954467 - L1ME2 LINE L1 -10 6154 5821 2005 92 39 4 chr6 11325087 11325368 -177954186 - AluSx SINE Alu -21 291 1 1532 219 51 91 chr6 11325368 11325574 -177953980 - L1ME2 LINE L1 -343 5821 5608 1740 162 11 96 chr6 11325574 11325734 -177953820 - MER2 DNA MER2_type 0 345 173 775 138 0 0 chr6 11325734 11325850 -177953704 + L1PA16 LINE L1 6042 6157 -9 1740 162 11 96 chr6 11325850 11326066 -177953488 - MER2 DNA MER2_type -172 173 1 2202 103 0 7 chr6 11326094 11326396 -177953158 + AluSq SINE Alu 1 300 -13 1981 138 151 16 chr6 11326499 11326876 -177952678 + MSTA LTR MaLR 1 428 0 7931 18 0 0 chr6 11327568 11328550 -177951004 + L1PA4 LINE L1 5171 6152 -3 21 36 0 0 chr6 11328550 11328578 -177950976 + AT_rich Low_complexity Low_complexity 1 28 0 276 30 0 0 chr6 11328664 11328697 -177950857 + (TG)n Simple_repeat Simple_repeat 2 34 0 2366 106 0 0 chr6 11328989 11329291 -177950263 + AluSx SINE Alu 1 302 -10 2320 89 21 0 chr6 11329967 11330258 -177949296 + AluSc SINE Alu 2 298 -11 197 273 0 18 chr6 11330636 11330691 -177948863 - L2 LINE L2 -1 3271 3218 965 191 0 15 chr6 11330724 11330928 -177948626 + AluSq SINE Alu 1 201 -112 255 273 55 71 chr6 11331048 11331286 -177948268 + LTR12 LTR ERV1 52 285 -429 2246 96 4 0 chr6 11331414 11331719 -177947835 - AluSp SINE Alu 0 306 1 581 317 104 38 chr6 11331921 11332196 -177947358 - L2 LINE L2 -6 3266 2952 961 32 113 0 chr6 11332196 11332320 -177947234 + MER85 DNA T2_type 1 138 -1 581 317 104 38 chr6 11332320 11332467 -177947087 - L2 LINE L2 -320 2952 2816 2456 103 0 0 chr6 11332627 11332939 -177946615 + AluSx SINE Alu 1 312 0 2262 113 7 10 chr6 11333457 11333766 -177945788 - AluSq SINE Alu -5 308 1 420 270 66 72 chr6 11333845 11334302 -177945252 + L1MEd LINE L1 1094 1579 -4658 2373 84 7 7 chr6 11334302 11334611 -177944943 + AluY SINE Alu 1 309 -2 420 270 66 72 chr6 11334611 11334731 -177944823 + L1MEd LINE L1 1579 1698 -4539 1132 252 91 11 chr6 11334945 11335298 -177944256 - L1MC4a LINE L1 -1017 6791 6411 2305 111 0 0 chr6 11335302 11335599 -177943955 + AluSx SINE Alu 1 297 -15 402 240 32 19 chr6 11335629 11335783 -177943771 - L1MEd LINE L1 -4974 1145 990 327 254 167 9 chr6 11336042 11336156 -177943398 - L1MEd LINE L1 -5426 693 562 233 176 0 39 chr6 11336458 11336509 -177943045 + CT-rich Low_complexity Low_complexity 2 50 0 2317 85 9 31 chr6 11337301 11337620 -177941934 - AluSx SINE Alu 0 312 1 626 279 65 14 chr6 11338335 11338550 -177941004 - MIR SINE MIR -20 242 17 25 0 0 0 chr6 11338641 11338666 -177940888 + AT_rich Low_complexity Low_complexity 1 25 0 2191 107 0 38 chr6 11338693 11338899 -177940655 - AluSc SINE Alu 0 309 118 2441 84 0 7 chr6 11338899 11339207 -177940347 - AluY SINE Alu -5 306 1 2191 107 0 38 chr6 11339207 11339319 -177940235 - AluSc SINE Alu -191 118 3 232 250 0 0 chr6 11339348 11339392 -177940162 + L2 LINE L2 3246 3289 -24 262 240 0 0 chr6 11340087 11340137 -177939417 - MER20 DNA MER1_type 0 219 170 302 298 70 26 chr6 11340529 11340743 -177938811 + MLT1K LTR MaLR 378 609 -6 1195 204 14 0 chr6 11340743 11340959 -177938595 + MER20 DNA MER1_type 1 219 0 204 147 0 0 chr6 11341434 11341468 -177938086 - L2 LINE L2 -1316 1998 1965 895 228 58 111 chr6 11341660 11341826 -177937728 + MLT1A2 LTR MaLR 1 174 -200 2289 105 7 3 chr6 11341826 11342131 -177937423 + AluSx SINE Alu 6 311 -1 895 228 58 111 chr6 11342131 11342359 -177937195 + MLT1A2 LTR MaLR 174 374 0 1872 143 11 3 chr6 11342920 11343207 -177936347 - AluJo SINE Alu -22 290 2 2197 99 7 7 chr6 11343949 11344241 -177935313 - AluSq SINE Alu -21 292 1 1965 156 0 7 chr6 11344762 11345063 -177934491 + AluJb SINE Alu 1 299 -13 452 200 10 150 chr6 11345587 11345787 -177933767 + MER5B DNA MER1_type 6 177 -1 1985 131 28 3 chr6 11346318 11346601 -177932953 - AluSx SINE Alu -20 292 3 2368 235 19 35 chr6 11346774 11347365 -177932189 + MER50-int LTR ERV1 2754 3334 -3871 779 292 48 30 chr6 11347700 11348270 -177931284 + MER50-int LTR ERV1 2885 3705 -1547 1148 302 84 68 chr6 11348270 11349790 -177929764 + MER50-int LTR ERV1 4526 6206 -885 259 308 135 19 chr6 11349951 11350107 -177929447 + MER50-int LTR ERV1 6158 6331 -1926 8043 118 3 2 chr6 11350980 11352144 -177927410 + MER50-int LTR ERV1 3880 7197 -8 3989 164 40 8 chr6 11352145 11352850 -177926704 + MER50 LTR ERV1 1 727 -7 844 210 51 5 chr6 11352842 11353130 -177926424 + MER93b LTR ERV1 40 373 0 * 2661 113 49 58 chr6 11353356 11353557 -177925997 + LTR26B LTR ERV1 1 202 -329 2199 104 7 3 chr6 11353557 11353855 -177925699 + AluSg SINE Alu 1 299 -11 2661 113 49 58 chr6 11353855 11354139 -177925415 + LTR26B LTR ERV1 202 482 -49 193 279 33 0 chr6 11354242 11354303 -177925251 - MIR SINE MIR -139 123 61 1339 261 94 39 chr6 11354353 11355067 -177924487 + HAL1 LINE L1 1045 1797 -710 2329 106 0 0 chr6 11355235 11355546 -177924008 + AluY SINE Alu 1 311 0 662 207 53 24 chr6 11355962 11356122 -177923432 - L2 LINE L2 0 3313 3146 2331 86 0 0 chr6 11356122 11356412 -177923142 + AluSc SINE Alu 1 290 -19 258 322 66 0 chr6 11356424 11356545 -177923009 - L2 LINE L2 -1034 2280 2152 300 321 60 74 chr6 11356775 11356862 -177922692 - L2 LINE L2 -1230 2084 1997 2093 135 3 3 chr6 11356862 11357166 -177922388 + AluSq SINE Alu 1 304 -9 300 321 60 74 chr6 11357166 11357377 -177922177 - L2 LINE L2 -1317 1997 1790 1528 140 92 54 chr6 11357825 11357910 -177921644 + MLT1B LTR MaLR 1 81 -309 2003 129 0 39 chr6 11357910 11358221 -177921333 - AluSq SINE Alu -14 299 1 1528 140 92 54 chr6 11358221 11358450 -177921104 + MLT1B LTR MaLR 81 327 -63 1114 84 7 7 chr6 11358456 11358599 -177920955 + AluSp SINE Alu 1 143 -170 2217 100 30 0 chr6 11358604 11358903 -177920651 + AluSp SINE Alu 1 308 -5 431 96 27 41 chr6 11358912 11358985 -177920569 + MLT1B LTR MaLR 317 388 -2 1619 138 28 16 chr6 11359212 11359466 -177920088 + MER1B DNA MER1_type 83 339 0 201 288 0 30 chr6 11359931 11359943 -177919611 + (CATA)n Simple_repeat Simple_repeat 4 15 -52 2168 104 0 36 chr6 11359943 11360252 -177919302 + AluSq SINE Alu 1 298 -15 201 288 0 30 chr6 11360252 11360305 -177919249 + (CATA)n Simple_repeat Simple_repeat 15 67 0 24 103 0 0 chr6 11361362 11361449 -177918105 + GC_rich Low_complexity Low_complexity 1 87 0 2382 91 10 0 chr6 11362974 11363283 -177916271 + AluSx SINE Alu 1 312 0 773 276 131 8 chr6 11363331 11363689 -177915865 - L2 LINE L2 -2 3311 2910 495 220 15 23 chr6 11363707 11363839 -177915715 + MER5B DNA MER1_type 1 131 -47 2145 117 24 0 chr6 11363879 11364170 -177915384 + AluSx SINE Alu 1 298 -14 1550 147 13 0 chr6 11364340 11364565 -177914989 - AluJb SINE Alu -79 233 6 216 268 0 18 chr6 11364565 11364621 -177914933 + MER5B DNA MER1_type 4 58 -120 2131 120 0 10 chr6 11364630 11364930 -177914624 + AluSx SINE Alu 1 297 -15 249 83 0 0 chr6 11365109 11365145 -177914409 + (TA)n Simple_repeat Simple_repeat 2 37 0 2076 159 14 44 chr6 11365152 11365358 -177914196 - MLT1A1 LTR MaLR -12 353 161 1961 157 3 6 chr6 11365358 11365670 -177913884 - AluJb SINE Alu -1 311 1 2076 159 14 44 chr6 11365670 11365827 -177913727 - MLT1A1 LTR MaLR -204 161 1 2743 48 0 0 chr6 11365974 11366285 -177913269 + AluY SINE Alu 1 311 0 3643 162 15 126 chr6 11367013 11368541 -177911013 - pTR5 LTR ERV1 0 2606 1524 429 269 100 19 chr6 11368541 11368701 -177910853 - MER112 DNA MER1_type -22 238 66 2260 107 0 3 chr6 11368834 11369132 -177910422 - AluSx SINE Alu -14 298 2 284 306 132 36 chr6 11369450 11369564 -177909990 + MIR SINE MIR 11 113 -149 2524 140 0 65 chr6 11369564 11369778 -177909776 + Tigger2a DNA MER2_type 1 170 -2538 2311 106 0 6 chr6 11369778 11370089 -177909465 - AluSg SINE Alu 0 310 2 2524 140 0 65 chr6 11370089 11370338 -177909216 + Tigger2a DNA MER2_type 170 434 0 284 306 132 36 chr6 11370338 11370442 -177909112 + MIR SINE MIR 113 250 -12 2126 119 14 3 chr6 11370472 11370765 -177908789 - AluSx SINE Alu -16 296 1 1038 316 17 44 chr6 11370831 11371236 -177908318 - MLT2F LTR ERVL -7 656 263 1807 181 83 39 chr6 11371236 11371667 -177907887 - MLT1C LTR MaLR 0 467 18 605 276 124 18 chr6 11371705 11371930 -177907624 - MLT2F LTR ERVL -414 249 1 2197 102 10 3 chr6 11372197 11372491 -177907063 + AluSq SINE Alu 1 296 -17 317 184 197 7 chr6 11372994 11373141 -177906413 - Charlie7 DNA MER1_type -41 2571 2397 1302 218 124 30 chr6 11373530 11373839 -177905715 - MLT1C LTR MaLR 0 467 106 2351 97 3 3 chr6 11373839 11374148 -177905406 + AluSq SINE Alu 1 309 -4 1302 218 124 30 chr6 11374148 11374265 -177905289 - MLT1C LTR MaLR -361 106 1 249 256 47 54 chr6 11374272 11374401 -177905153 - Charlie7 DNA MER1_type -286 2326 2199 499 203 0 0 chr6 11374412 11374491 -177905063 + MER21B LTR ERV1 12 90 -773 2386 234 79 60 chr6 11374513 11374533 -177905021 + MER21B LTR ERV1 19 37 -826 2695 122 46 2 chr6 11374533 11374943 -177904611 + MSTA LTR MaLR 1 428 0 2386 234 79 60 chr6 11374943 11375606 -177903948 + MER21B LTR ERV1 37 721 -142 1921 121 67 0 chr6 11375606 11375888 -177903666 + AluSg SINE Alu 1 301 -9 2386 234 79 60 chr6 11375888 11375975 -177903579 + MER21B LTR ERV1 721 805 -58 1038 164 91 34 chr6 11376050 11376258 -177903296 - AluJo SINE Alu -6 306 87 1084 228 49 137 chr6 11376260 11376483 -177903071 - Charlie7 DNA MER1_type -453 2159 1918 461 196 52 0 chr6 11376483 11376580 -177902974 - U13 snRNA snRNA -2 102 1 1084 228 49 137 chr6 11376580 11376719 -177902835 - Charlie7 DNA MER1_type -694 1918 1860 1436 120 0 5 chr6 11376719 11376936 -177902618 + L1PA14 LINE L1 5946 6161 0 1084 228 49 137 chr6 11376936 11377128 -177902426 - Charlie7 DNA MER1_type -752 1860 1653 2039 136 51 20 chr6 11377128 11377480 -177902074 - MLT1A1 LTR MaLR 0 365 3 1010 258 59 7 chr6 11377612 11377899 -177901655 + LTR16A LTR ERVL 149 450 0 240 209 15 30 chr6 11377938 11378005 -177901549 - Charlie7 DNA MER1_type -1027 1585 1520 582 239 60 16 chr6 11378106 11378290 -177901264 - Charlie7 DNA MER1_type -2368 244 53 223 217 0 0 chr6 11379948 11379994 -177899560 - MIR SINE MIR -64 198 153 1802 125 93 3 chr6 11380012 11380301 -177899253 + MER46B DNA MER2_type 44 233 -3 728 204 26 0 chr6 11380301 11380453 -177899101 - MIR SINE MIR -105 157 2 1929 128 3 3 chr6 11380673 11380955 -177898599 + AluSx SINE Alu 19 300 -12 350 210 328 36 chr6 11381060 11381119 -177898435 - MER112 DNA MER1_type -4 252 211 2268 112 3 0 chr6 11381119 11381414 -177898140 + AluSp SINE Alu 1 296 -17 350 210 328 36 chr6 11381414 11381549 -177898005 - MER112 DNA MER1_type -45 211 1 298 254 303 0 chr6 11381923 11382045 -177897509 + MER5A DNA MER1_type 10 168 -21 201 311 0 0 chr6 11382200 11382261 -177897293 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 2253 64 19 45 chr6 11382387 11382700 -177896854 - AluY SINE Alu -6 305 1 2481 117 27 46 chr6 11382700 11382904 -177896650 - THE1B LTR MaLR -2 362 167 2056 135 10 3 chr6 11382904 11383208 -177896346 + AluSq SINE Alu 1 306 -7 2481 117 27 46 chr6 11383208 11383372 -177896182 - THE1B LTR MaLR -197 167 1 2180 132 0 0 chr6 11383942 11384253 -177895301 + AluSx SINE Alu 1 311 -1 2039 118 3 26 chr6 11384879 11385185 -177894369 - AluSx SINE Alu -13 299 1 217 308 146 77 chr6 11385228 11385277 -177894277 + L2 LINE L2 3134 3178 -94 1794 198 76 11 chr6 11385277 11385646 -177893908 + MSTD LTR MaLR 4 396 0 217 308 146 77 chr6 11385646 11385726 -177893828 + L2 LINE L2 3178 3272 0 2458 77 3 7 chr6 11385851 11386161 -177893393 - AluY SINE Alu -2 309 1 21 57 0 0 chr6 11386746 11386781 -177892773 + AT_rich Low_complexity Low_complexity 1 35 0 1177 271 72 26 chr6 11386955 11387342 -177892212 - MLT1I LTR MaLR -4 405 1 446 270 215 0 chr6 11388778 11388978 -177890576 + MIR SINE MIR 2 244 -18 820 153 164 56 chr6 11389120 11389388 -177890166 + L1MC5 LINE L1 7489 7785 -176 1716 188 55 6 chr6 11389467 11389797 -177889757 - MLT1A1 LTR MaLR 0 365 20 385 197 137 17 chr6 11389811 11389928 -177889626 - LTR16A LTR ERVL 0 450 320 253 260 64 81 chr6 11389969 11390142 -177889412 - LTR16A LTR ERVL -229 221 52 2220 120 13 0 chr6 11390916 11391215 -177888339 - AluSx SINE Alu -9 303 1 2111 114 7 3 chr6 11391223 11391513 -177888041 - AluSx SINE Alu -21 291 1 256 282 145 17 chr6 11391592 11391709 -177887845 + MER97b DNA MER1_type? 5 136 -917 758 264 59 76 chr6 11391715 11392117 -177887437 - MLT1H LTR MaLR -88 461 39 1048 275 56 13 chr6 11392188 11392562 -177886992 + L1MEc LINE L1 1656 2045 -4351 374 123 0 0 chr6 11392632 11392689 -177886865 + L1MEc LINE L1 2724 2780 -3435 * 1416 249 51 24 chr6 11392683 11393097 -177886457 - L1M4 LINE L1 -2436 3710 3286 794 211 17 0 chr6 11393120 11393300 -177886254 + L1M4 LINE L1 2825 3007 -3139 * 5769 212 38 38 chr6 11393292 11393446 -177886108 + L1M4 LINE L1 3839 3991 -2177 2134 121 10 10 chr6 11393446 11393751 -177885803 - AluSq SINE Alu -8 305 1 5769 212 38 38 chr6 11393751 11394654 -177884900 + L1M4 LINE L1 3991 4897 -1271 1815 129 0 0 chr6 11394654 11394902 -177884652 + AluSx SINE Alu 46 293 -19 5769 212 38 38 chr6 11394902 11395427 -177884127 + L1M4 LINE L1 4897 5420 -748 2485 62 0 3 chr6 11395613 11395917 -177883637 - AluY SINE Alu -8 303 1 2392 73 0 13 chr6 11395968 11396283 -177883271 + AluY SINE Alu 1 311 0 2276 90 7 3 chr6 11396327 11396627 -177882927 - AluSc SINE Alu -8 301 1 264 239 0 0 chr6 11397023 11397069 -177882485 + AluSp SINE Alu 136 181 -122 2234 78 32 0 chr6 11397107 11397388 -177882166 + AluY SINE Alu 1 290 -21 2001 113 0 34 chr6 11397667 11397800 -177881754 + AluSx SINE Alu 1 137 -171 2313 53 3 7 chr6 11397800 11398138 -177881416 + AluY SINE Alu 1 337 0 2001 113 0 34 chr6 11398138 11398321 -177881233 + AluSx SINE Alu 137 308 0 816 183 0 71 chr6 11398727 11398896 -177880658 - FRAM SINE Alu -20 156 1 2365 99 0 0 chr6 11399443 11399745 -177879809 - AluSx SINE Alu -10 302 1 24 0 0 0 chr6 11399809 11399833 -177879721 + AT_rich Low_complexity Low_complexity 1 24 0 2413 190 114 44 chr6 11400524 11401046 -177878508 + L1MC5 LINE L1 7046 7649 -312 2230 114 0 0 chr6 11401046 11401343 -177878211 - AluSx SINE Alu -15 297 1 2413 190 114 44 chr6 11401343 11401645 -177877909 + L1MC5 LINE L1 7649 7928 -33 468 239 79 65 chr6 11402013 11402190 -177877364 + MIR SINE MIR 21 195 -62 1302 109 171 0 chr6 11402339 11402532 -177877022 - MER30 DNA MER1_type -1 229 4 2390 91 0 7 chr6 11402806 11403113 -177876441 - AluSq SINE Alu -8 305 1 539 241 0 9 chr6 11403379 11403487 -177876067 + FLAM_A SINE Alu 8 114 -28 2166 114 7 0 chr6 11403488 11403786 -177875768 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr6 11404315 11404337 -177875217 + AT_rich Low_complexity Low_complexity 1 22 0 578 307 33 37 chr6 11404653 11404894 -177874660 + L2 LINE L2 2831 3070 -243 3796 159 18 35 chr6 11404905 11405365 -177874189 + L1PB4 LINE L1 4888 5354 -818 2183 125 0 3 chr6 11405365 11405662 -177873892 - AluSg SINE Alu -14 296 1 3796 159 18 35 chr6 11405662 11406505 -177873049 + L1PB4 LINE L1 5354 6165 -7 27 49 0 0 chr6 11406544 11406585 -177872969 + AT_rich Low_complexity Low_complexity 1 41 0 950 234 56 9 chr6 11406762 11406976 -177872578 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr6 11408057 11408078 -177871476 + AT_rich Low_complexity Low_complexity 1 21 0 2318 96 0 0 chr6 11408078 11408371 -177871183 - AluSg SINE Alu -17 293 1 225 260 0 68 chr6 11408808 11408881 -177870673 + MER5A DNA MER1_type 7 74 -115 429 238 67 0 chr6 11409400 11409505 -177870049 + L2 LINE L2 3160 3271 -1 564 264 43 6 chr6 11409641 11409804 -177869750 - MIR SINE MIR -32 230 62 2225 98 3 10 chr6 11410157 11410463 -177869091 - AluJb SINE Alu -5 307 4 23 54 0 0 chr6 11411040 11411077 -177868477 + GC_rich Low_complexity Low_complexity 1 37 0 210 288 8 40 chr6 11411137 11411262 -177868292 + G-rich Low_complexity Low_complexity 6 126 0 301 274 109 106 chr6 11411449 11411806 -177867748 + L1M2 LINE L1 772 1129 -5720 189 0 0 0 chr6 11412107 11412128 -177867426 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 0 0 0 chr6 11412162 11412191 -177867363 + (TG)n Simple_repeat Simple_repeat 2 30 0 596 261 29 85 chr6 11412482 11412754 -177866800 + L2 LINE L2 3052 3308 -5 2021 141 0 10 chr6 11413262 11413568 -177865986 - AluSx SINE Alu -9 303 1 395 310 244 0 chr6 11414677 11414874 -177864680 + MIR SINE MIR 17 261 -1 1434 181 79 3 chr6 11414972 11415264 -177864290 - MER33 DNA MER1_type -4 320 7 1144 177 47 0 chr6 11415921 11416153 -177863401 + L1MA4 LINE L1 6054 6296 -4 372 308 84 11 chr6 11416295 11416456 -177863098 + MIR SINE MIR 20 192 -65 182 278 45 99 chr6 11416456 11416679 -177862875 + L2 LINE L2 2925 3135 -178 24 0 0 0 chr6 11416737 11416761 -177862793 + AT_rich Low_complexity Low_complexity 1 24 0 1023 110 0 0 chr6 11417079 11417250 -177862304 - AluSc SINE Alu 0 316 146 271 238 119 66 chr6 11417392 11417528 -177862026 - MIR SINE MIR -66 196 55 217 213 33 0 chr6 11417682 11417743 -177861811 + (TA)n Simple_repeat Simple_repeat 1 63 0 758 182 6 3 chr6 11418336 11418668 -177860886 + CT-rich Low_complexity Low_complexity 1 333 0 283 241 9 103 chr6 11420155 11420271 -177859283 + MER5A DNA MER1_type 40 144 -45 223 184 0 0 chr6 11420518 11420556 -177858998 + L2 LINE L2 3219 3256 -16 2166 94 0 4 chr6 11420556 11420867 -177858687 - AluSx SINE Alu 0 318 9 2172 108 0 7 chr6 11420886 11421194 -177858360 - AluSx SINE Alu 0 312 2 221 348 11 11 chr6 11422483 11422575 -177856979 - L2 LINE L2 -411 2903 2812 493 261 84 28 chr6 11422789 11422931 -177856623 + L2 LINE L2 3163 3312 -1 245 220 40 0 chr6 11423008 11423058 -177856496 + MER2 DNA MER2_type 294 345 0 180 0 0 0 chr6 11423233 11423253 -177856301 + (T)n Simple_repeat Simple_repeat 1 20 0 205 315 157 9 chr6 11423424 11423532 -177856022 - MIR SINE MIR -57 151 28 665 289 150 23 chr6 11423669 11424596 -177854958 + L1ME2 LINE L1 4877 5950 -214 2456 71 0 3 chr6 11424804 11425113 -177854441 + AluY SINE Alu 1 308 -3 493 179 82 30 chr6 11425530 11425664 -177853890 - MIR SINE MIR -6 256 116 509 275 50 27 chr6 11426104 11426311 -177853243 - MIR SINE MIR -13 249 41 1066 170 22 36 chr6 11426347 11426571 -177852983 - AluJb SINE Alu -5 307 87 556 250 17 72 chr6 11426682 11426862 -177852692 + MIR SINE MIR 71 240 -22 350 312 150 23 chr6 11427574 11427747 -177851807 + L3 LINE CR1 987 1181 -396 717 311 56 28 chr6 11427882 11428204 -177851350 + L3 LINE CR1 1197 1527 -50 891 98 74 0 chr6 11428510 11428721 -177850833 + L1MA8 LINE L1 6011 6284 -7 181 308 154 0 chr6 11431403 11431494 -177848060 + MIR SINE MIR 61 165 -97 21 57 0 0 chr6 11433853 11433888 -177845666 + AT_rich Low_complexity Low_complexity 1 35 0 242 316 36 42 chr6 11434308 11434520 -177845034 - L2 LINE L2 -281 2991 2779 2092 118 7 0 chr6 11435552 11435865 -177843689 + AluSx SINE Alu 1 315 0 558 310 146 22 chr6 11436207 11436610 -177842944 + L3 LINE CR1 630 1082 -495 519 239 197 0 chr6 11436915 11437057 -177842497 + MER5A DNA MER1_type 9 178 -11 2130 164 47 28 chr6 11437058 11437527 -177842027 - Looper DNA T2_type -992 566 89 437 194 279 30 chr6 11437689 11437854 -177841700 - L2 LINE L2 0 3313 3108 341 231 188 17 chr6 11438287 11438404 -177841150 + MIR SINE MIR 112 248 -14 265 241 0 0 chr6 11438665 11438719 -177840835 - Tigger8 DNA MER2_type -581 85 32 317 247 0 37 chr6 11439414 11439495 -177840059 + GA-rich Low_complexity Low_complexity 3 80 0 469 302 11 0 chr6 11440203 11440382 -177839172 - L1MEc LINE L1 -4601 1795 1615 1486 155 71 7 chr6 11440396 11440692 -177838862 - L1ME1 LINE L1 -182 5984 5670 715 224 14 5 chr6 11441059 11441086 -177838468 - L1P4 LINE L1 -476 5689 5664 183 42 0 0 chr6 11441086 11441110 -177838444 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1493 135 9 0 chr6 11441112 11441327 -177838227 - AluSg/x SINE Alu -23 289 73 715 224 14 5 chr6 11441327 11441465 -177838089 - L1P4 LINE L1 -501 5664 5522 469 288 52 69 chr6 11441592 11441825 -177837729 - MER115 DNA AcHobo -464 229 1 255 274 102 59 chr6 11442647 11442833 -177836721 + L2 LINE L2 3120 3313 0 2435 75 0 7 chr6 11444208 11444513 -177835041 - AluY SINE Alu -8 303 1 2384 97 0 0 chr6 11445274 11445572 -177833982 + AluSg SINE Alu 1 298 -12 616 338 86 19 chr6 11445636 11446071 -177833483 + L2 LINE L2 2590 3036 -236 1083 120 87 22 chr6 11446096 11446362 -177833192 + MER44D DNA MER2_type 1 669 -36 345 308 48 0 chr6 11446440 11446544 -177833010 + L2 LINE L2 3164 3272 0 2490 158 35 26 chr6 11447933 11448396 -177831158 - MLT1C LTR MaLR 0 467 1 649 210 6 60 chr6 11448418 11448585 -177830969 + MIR SINE MIR 95 252 -10 373 261 54 23 chr6 11449597 11449727 -177829827 + MIR SINE MIR 35 168 -94 2115 128 0 0 chr6 11450422 11450719 -177828835 - AluSx SINE Alu -15 297 1 328 314 51 0 chr6 11450756 11450874 -177828680 - MIR3 SINE MIR -6 202 79 209 227 0 0 chr6 11451162 11451206 -177828348 + A-rich Low_complexity Low_complexity 1 44 0 2163 111 0 3 chr6 11451499 11451796 -177827758 - AluSx SINE Alu -16 296 1 4077 39 2 2 chr6 11451989 11452455 -177827099 + L1PA8 LINE L1 5703 6168 -4 228 278 74 97 chr6 11452539 11452755 -177826799 + MIR SINE MIR 34 244 -18 186 207 52 17 chr6 11453334 11453392 -177826162 - L2 LINE L2 -249 3064 3005 * 963 259 95 30 chr6 11453379 11453715 -177825839 - L2 LINE L2 -431 2883 2526 261 386 0 11 chr6 11454669 11454757 -177824797 + MIR SINE MIR 17 103 -105 * 373 336 0 42 chr6 11454754 11454897 -177824657 - L2 LINE L2 -2 3270 3134 392 268 109 45 chr6 11455625 11455923 -177823631 + L1MC4 LINE L1 5712 5990 -1971 2358 89 0 0 chr6 11455923 11456215 -177823339 + AluSg SINE Alu 2 293 -17 392 268 109 45 chr6 11456215 11457305 -177822249 + L1MC4 LINE L1 5990 7146 -815 2376 125 105 20 chr6 11457305 11457697 -177821857 - MSTB LTR MaLR -1 425 1 392 268 109 45 chr6 11457697 11457757 -177821797 + L1MC4 LINE L1 7146 7201 -760 * 700 234 101 102 chr6 11457748 11458499 -177821055 + L1MC5 LINE L1 7238 7911 -50 2092 76 0 0 chr6 11458577 11458828 -177820726 - AluSq SINE Alu -22 291 41 526 101 0 0 chr6 11458829 11458898 -177820656 - AluS SINE Alu -242 71 3 2004 94 8 4 chr6 11458908 11459174 -177820380 - AluY SINE Alu -10 301 35 240 234 0 16 chr6 11461041 11461105 -177818449 + MER112 DNA MER1_type 17 79 -181 2454 88 0 3 chr6 11461105 11461411 -177818143 - AluSq SINE Alu -8 305 1 738 174 0 0 chr6 11461412 11461527 -177818027 - FRAM SINE Alu -9 167 53 1808 142 0 62 chr6 11461588 11461913 -177817641 + AluSx SINE Alu 1 305 -7 805 176 0 0 chr6 11462565 11462684 -177816870 - FLAM_C SINE Alu -23 120 2 419 259 56 62 chr6 11462715 11462774 -177816780 + MER112 DNA MER1_type 99 157 -103 2357 65 0 0 chr6 11462774 11463088 -177816466 - AluSc SINE Alu 0 314 1 419 259 56 62 chr6 11463088 11463189 -177816365 + MER112 DNA MER1_type 157 259 -1 350 291 93 7 chr6 11464052 11464203 -177815351 - MIR SINE MIR -30 232 69 340 154 77 0 chr6 11464278 11464343 -177815211 - MIR SINE MIR -20 242 173 2149 95 50 0 chr6 11465943 11466226 -177813328 - AluSq SINE Alu -16 297 1 2297 104 3 0 chr6 11467009 11467308 -177812246 - AluSp SINE Alu -7 306 7 21638 31 4 4 chr6 11467977 11471236 -177808318 + L1PA3 LINE L1 2881 6154 -1 2222 120 0 0 chr6 11471281 11471581 -177807973 + AluSx SINE Alu 3 302 -10 21 57 0 0 chr6 11474287 11474322 -177805232 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr6 11474537 11474562 -177804992 + AT_rich Low_complexity Low_complexity 1 25 0 278 210 25 118 chr6 11476206 11476257 -177803297 + MER102b DNA MER1_type 233 268 -1160 1889 106 92 21 chr6 11476257 11476539 -177803015 - AluSx SINE Alu -10 302 1 278 210 25 118 chr6 11476539 11476606 -177802948 + MER102b DNA MER1_type 268 340 -1 2391 94 3 0 chr6 11476982 11477290 -177802264 + AluSx SINE Alu 1 309 -3 252 0 0 0 chr6 11477290 11477318 -177802236 + (TA)n Simple_repeat Simple_repeat 2 29 0 4496 112 26 9 chr6 11477822 11478477 -177801077 + L1PA16 LINE L1 5488 6153 -13 322 314 91 43 chr6 11479068 11479278 -177800276 + L2 LINE L2 3044 3263 -9 207 221 44 29 chr6 11479740 11479808 -177799746 + L2 LINE L2 2992 3060 -212 2170 102 3 7 chr6 11480211 11480506 -177799048 + AluSx SINE Alu 1 294 -18 2069 133 0 0 chr6 11480898 11481184 -177798370 + AluSg1 SINE Alu 1 286 -23 2108 114 7 0 chr6 11482062 11482342 -177797212 - AluSx SINE Alu -26 286 5 431 277 23 28 chr6 11482535 11482712 -177796842 + MLT1J LTR MaLR 3 178 -333 739 176 0 0 chr6 11482770 11482889 -177796665 + FLAM_C SINE Alu 2 120 -13 385 311 60 44 chr6 11482961 11483212 -177796342 + MLT1J LTR MaLR 243 497 -14 411 266 90 78 chr6 11483378 11483621 -177795933 + L1ME4a LINE L1 5663 5913 -208 1928 123 34 3 chr6 11483621 11483914 -177795640 + AluSq SINE Alu 1 302 -11 411 266 90 78 chr6 11483914 11484027 -177795527 + L1ME4a LINE L1 5913 6023 -98 2288 87 0 7 chr6 11484109 11484407 -177795147 - AluSc SINE Alu 0 309 14 556 294 165 41 chr6 11484659 11485071 -177794483 + L2 LINE L2 2052 2514 -800 548 321 143 35 chr6 11485160 11485644 -177793910 + L2 LINE L2 2756 3283 -30 271 283 165 40 chr6 11485696 11485933 -177793621 - L1ME4a LINE L1 -199 5922 5645 2544 46 0 13 chr6 11485933 11486238 -177793316 + AluY SINE Alu 1 301 -10 271 283 165 40 chr6 11486238 11486272 -177793282 - L1ME4a LINE L1 -476 5645 5617 827 305 185 36 chr6 11486817 11487785 -177791769 + L2 LINE L2 162 1273 -2041 526 259 110 80 chr6 11487907 11488100 -177791454 - L1ME4a LINE L1 -2179 3967 3781 378 0 0 0 chr6 11488100 11488142 -177791412 + (CA)n Simple_repeat Simple_repeat 2 43 0 526 259 110 80 chr6 11488142 11488558 -177790996 - L1ME4a LINE L1 -2365 3781 3340 615 289 77 37 chr6 11488624 11488949 -177790605 - L1ME4a LINE L1 -2736 3410 3073 189 174 0 65 chr6 11488982 11489028 -177790526 - MER5B DNA MER1_type -13 165 123 530 253 125 36 chr6 11489116 11489448 -177790106 - L1M4 LINE L1 -2069 4077 3718 2088 127 3 0 chr6 11489449 11489766 -177789788 - AluSq SINE Alu 0 318 1 308 323 102 61 chr6 11489788 11490101 -177789453 - L1M4 LINE L1 -2439 3707 3382 925 290 73 66 chr6 11490110 11490776 -177788778 + L2 LINE L2 2310 3048 -265 44 0 0 0 chr6 11490988 11491032 -177788522 + AT_rich Low_complexity Low_complexity 1 44 0 955 177 39 0 chr6 11491032 11491213 -177788341 + MER46A DNA MER2_type 49 236 0 203 329 14 43 chr6 11491213 11491283 -177788271 + L2 LINE L2 3244 3311 -2 2429 68 7 0 chr6 11491341 11491635 -177787919 + AluY SINE Alu 2 297 -14 1953 188 70 26 chr6 11492607 11493107 -177786447 + Charlie1b DNA MER1_type 1 522 -1 2262 100 0 7 chr6 11494502 11494803 -177784751 - AluSq SINE Alu -14 299 1 2568 71 3 0 chr6 11495699 11496009 -177783545 - AluSp SINE Alu -2 311 1 2312 148 19 10 chr6 11496014 11496427 -177783127 - L1MB4 LINE L1 0 6180 5764 2132 157 82 17 chr6 11497039 11497441 -177782113 + MSTA LTR MaLR 1 428 0 1833 164 0 17 chr6 11497780 11498067 -177781487 - AluJo SINE Alu -30 282 1 2174 112 60 65 chr6 11498427 11498468 -177781086 - L1MA9 LINE L1 -1 6311 6271 1784 191 0 7 chr6 11498468 11498771 -177780783 + AluJo SINE Alu 1 301 -11 2174 112 60 65 chr6 11498771 11498834 -177780720 - L1MA9 LINE L1 -41 6271 6209 873 125 0 23 chr6 11498834 11498962 -177780592 + FLAM_C SINE Alu 1 125 -8 2174 112 60 65 chr6 11498962 11499319 -177780235 - L1MA9 LINE L1 -103 6209 5851 398 264 236 0 chr6 11499769 11499951 -177779603 - MIR SINE MIR -20 242 18 996 254 166 15 chr6 11501567 11501965 -177777589 + L2 LINE L2 2856 3313 0 21 0 0 0 chr6 11502782 11502803 -177776751 + AT_rich Low_complexity Low_complexity 1 21 0 200 220 140 0 chr6 11503207 11503257 -177776297 - L3 LINE CR1 -92 1485 1429 1941 151 10 7 chr6 11504151 11504455 -177775099 - AluJb SINE Alu -7 305 1 252 246 18 0 chr6 11504484 11504541 -177775013 - L2 LINE L2 -1 3312 3255 1455 188 12 4 chr6 11504638 11504893 -177774661 + AluJb SINE Alu 1 257 -55 314 263 15 22 chr6 11505327 11505464 -177774090 + L1M4 LINE L1 2732 2867 -3279 258 214 131 96 chr6 11505733 11505962 -177773592 + L1M4 LINE L1 2155 2391 -3755 1153 264 105 87 chr6 11506087 11507219 -177772335 + L1M4 LINE L1 2732 3915 -2231 1623 165 32 21 chr6 11507219 11507557 -177771997 + L1MA9 LINE L1 5965 6308 -4 1153 264 105 87 chr6 11507557 11508366 -177771188 + L1M4 LINE L1 3915 4708 -1438 468 259 102 42 chr6 11508501 11509057 -177770497 + L1ME3A LINE L1 1370 1992 -4729 912 232 72 78 chr6 11509402 11509802 -177769752 + L1ME3A LINE L1 2452 2853 -3687 2386 104 3 0 chr6 11509802 11510109 -177769445 - AluSp SINE Alu -5 308 1 912 232 72 78 chr6 11510109 11510583 -177768971 + L1ME3A LINE L1 2853 3322 -3218 2403 88 3 7 chr6 11510583 11510891 -177768663 + AluSx SINE Alu 1 307 -5 912 232 72 78 chr6 11510891 11510983 -177768571 + L1ME3A LINE L1 3322 3413 -3127 1181 270 100 26 chr6 11510987 11511827 -177767727 + L1ME3A LINE L1 5441 6348 -216 337 327 81 54 chr6 11511859 11512082 -177767472 + L1ME3A LINE L1 6321 6549 -15 7221 29 7 0 chr6 11513293 11514581 -177764973 - L1PA4 LINE L1 -4 6151 4855 295 221 0 0 chr6 11514761 11514829 -177764725 - L1MA9 LINE L1 -64 7667 7600 12955 187 43 20 chr6 11514835 11516461 -177763093 - L1MA9 LINE L1 -234 7497 5910 2052 141 0 0 chr6 11516461 11516758 -177762796 - AluY SINE Alu -14 297 1 12955 187 43 20 chr6 11516758 11519085 -177760469 - L1MA9 LINE L1 -1821 5910 3462 2154 91 42 0 chr6 11519097 11519382 -177760172 - AluSx SINE Alu -15 297 1 202 179 18 18 chr6 11519522 11519578 -177759976 + (TAA)n Simple_repeat Simple_repeat 2 57 0 932 207 8 68 chr6 11519635 11519804 -177759750 + MER58A DNA MER1_type 2 155 -2265 1779 109 109 7 chr6 11519804 11520078 -177759476 + AluSg SINE Alu 3 304 -6 932 207 8 68 chr6 11520078 11520145 -177759409 + MER58A DNA MER1_type 155 224 0 2009 136 7 3 chr6 11520913 11521200 -177758354 - AluSx SINE Alu -24 288 1 774 222 62 0 chr6 11522013 11522189 -177757365 + MER5A DNA MER1_type 3 189 0 915 187 111 0 chr6 11522197 11522395 -177757159 + MER58A DNA MER1_type 1 220 -4 2273 110 0 0 chr6 11522543 11522835 -177756719 + AluSx SINE Alu 1 292 -20 2119 131 0 0 chr6 11523617 11523914 -177755640 - AluJb SINE Alu -15 297 1 1857 147 7 0 chr6 11524414 11524700 -177754854 - AluJb SINE Alu -18 294 7 2213 106 6 22 chr6 11525632 11525944 -177753610 - AluSx SINE Alu -5 307 1 23 0 0 0 chr6 11526060 11526083 -177753471 + AT_rich Low_complexity Low_complexity 1 23 0 1837 137 81 0 chr6 11526406 11526691 -177752863 + AluSq SINE Alu 1 308 -5 1290 208 4 0 chr6 11526763 11526994 -177752560 + AluJo SINE Alu 5 236 -76 21 0 0 0 chr6 11527013 11527034 -177752520 + AT_rich Low_complexity Low_complexity 1 21 0 7828 70 9 42 chr6 11527150 11528257 -177751297 + MER11C LTR ERVK 1 1071 0 2202 129 0 3 chr6 11528521 11528824 -177750730 + AluSx SINE Alu 6 307 -5 21 0 0 0 chr6 11529299 11529320 -177750234 + AT_rich Low_complexity Low_complexity 1 21 0 2701 71 37 0 chr6 11530248 11530599 -177748955 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr6 11531147 11531178 -177748376 + AT_rich Low_complexity Low_complexity 1 31 0 2501 67 0 3 chr6 11531613 11531925 -177747629 + AluY SINE Alu 1 311 0 2129 102 0 0 chr6 11531941 11532216 -177747338 + AluSg SINE Alu 29 303 -7 1092 147 0 138 chr6 11532505 11532831 -177746723 + MER33 DNA MER1_type 44 324 0 1406 66 0 0 chr6 11532964 11533131 -177746423 + AluY SINE Alu 133 299 -12 366 174 224 0 chr6 11533452 11533550 -177746004 + LTR36 LTR ERV1 3 122 -489 212 0 36 0 chr6 11533551 11533579 -177745975 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2514 51 3 3 chr6 11533592 11533886 -177745668 + AluY SINE Alu 1 294 -17 6071 65 39 0 chr6 11533887 11534675 -177744879 + L1PA11 LINE L1 5322 6140 -34 469 45 76 0 chr6 11534700 11534766 -177744788 + L1PA11 LINE L1 6104 6174 0 330 85 0 0 chr6 11534826 11534873 -177744681 + L1PA12 LINE L1 6107 6153 -15 551 99 77 0 chr6 11534888 11534979 -177744575 + L1PA12 LINE L1 6071 6168 0 885 226 123 57 chr6 11534987 11535080 -177744474 + LTR36 LTR ERV1 107 192 -419 2081 108 18 0 chr6 11535080 11535358 -177744196 + AluSx SINE Alu 1 283 -29 231 61 0 0 chr6 11535358 11535391 -177744163 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 885 226 123 57 chr6 11535391 11535628 -177743926 + LTR36 LTR ERV1 191 460 -151 15541 197 26 29 chr6 11535628 11536763 -177742791 + L1P5 LINE L1 691 1827 -5040 2474 80 3 0 chr6 11536763 11537063 -177742491 + AluSc SINE Alu 1 301 -8 15541 197 26 29 chr6 11537063 11537369 -177742185 + L1P5 LINE L1 1827 2132 -4735 967 122 0 0 chr6 11537369 11537508 -177742046 - AluY SINE Alu 0 311 173 15541 197 26 29 chr6 11537508 11538594 -177740960 + L1P5 LINE L1 2132 3219 -3648 2323 91 0 10 chr6 11538594 11538890 -177740664 - AluSx SINE Alu -19 293 1 15541 197 26 29 chr6 11538890 11540551 -177739003 + L1P5 LINE L1 3219 4882 -1985 2322 98 3 13 chr6 11540551 11540858 -177738696 + AluSx SINE Alu 1 304 -8 15541 197 26 29 chr6 11540858 11541468 -177738086 + L1P5 LINE L1 4882 5492 -1375 2131 123 0 3 chr6 11541468 11541761 -177737793 + AluSp SINE Alu 5 296 -17 15541 197 26 29 chr6 11541761 11542149 -177737405 + L1P5 LINE L1 5492 6149 -718 339 80 53 0 chr6 11542399 11542458 -177737096 - L1M2 LINE L1 -550 5630 5572 1039 88 0 0 chr6 11543565 11543702 -177735852 + AluY SINE Alu 170 306 -5 2394 80 3 13 chr6 11546169 11546480 -177733074 + AluSp SINE Alu 1 308 -5 334 260 68 73 chr6 11546643 11546835 -177732719 - MIR SINE MIR -70 192 2 2122 116 20 0 chr6 11547412 11547704 -177731850 + AluSq SINE Alu 4 301 -12 1767 161 10 43 chr6 11548230 11548535 -177731019 - AluSx SINE Alu -17 295 1 27 19 0 57 chr6 11548600 11548653 -177730901 + AT_rich Low_complexity Low_complexity 1 50 0 2359 71 7 3 chr6 11548698 11548995 -177730559 + AluSq SINE Alu 1 298 -15 2310 86 3 0 chr6 11550005 11550297 -177729257 + AluSp SINE Alu 1 293 -20 601 96 0 0 chr6 11550514 11550597 -177728957 + AluS SINE Alu 2 84 -229 3122 68 47 9 chr6 11550597 11551022 -177728532 + LTR10D LTR ERV1 1 441 -72 23 0 0 0 chr6 11551815 11551838 -177727716 + AT_rich Low_complexity Low_complexity 1 23 0 232 250 140 30 chr6 11551838 11551938 -177727616 + L2 LINE L2 3154 3264 -8 282 198 0 34 chr6 11552627 11552751 -177726803 + MER5A DNA MER1_type 6 189 0 2180 91 35 0 chr6 11553003 11553290 -177726264 + AluSp SINE Alu 1 297 -16 222 253 121 10 chr6 11553510 11553609 -177725945 - MIR SINE MIR -10 252 143 1867 155 14 0 chr6 11553705 11553995 -177725559 + AluJo SINE Alu 3 296 -16 461 224 65 77 chr6 11554083 11554329 -177725225 + L2 LINE L2 2883 3125 -188 204 378 63 0 chr6 11554479 11554590 -177724964 - L2 LINE L2 -788 2526 2409 522 70 0 0 chr6 11554616 11554687 -177724867 + (CA)n Simple_repeat Simple_repeat 2 72 0 180 0 0 0 chr6 11554862 11554882 -177724672 + (A)n Simple_repeat Simple_repeat 1 20 0 6157 134 41 10 chr6 11555179 11556381 -177723173 + L1MA5 LINE L1 4713 5972 -328 2191 119 3 0 chr6 11556381 11556684 -177722870 + AluSq SINE Alu 1 304 -9 6157 134 41 10 chr6 11556684 11557015 -177722539 + L1MA5 LINE L1 5972 6292 -8 2176 97 3 3 chr6 11557141 11557431 -177722123 + AluSg SINE Alu 1 290 -20 260 266 0 130 chr6 11557860 11557906 -177721648 + MIR SINE MIR 104 154 -108 2635 52 0 3 chr6 11557906 11558216 -177721338 + AluSc SINE Alu 1 309 0 260 266 0 130 chr6 11558216 11558338 -177721216 + MIR SINE MIR 154 250 -12 245 245 50 50 chr6 11558525 11558664 -177720890 + MER5B DNA MER1_type 10 148 -30 2337 75 3 3 chr6 11559587 11559879 -177719675 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr6 11560074 11560096 -177719458 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1923 122 30 16 chr6 11561642 11562041 -177717513 - AluJb SINE Alu 0 407 5 199 71 48 0 chr6 11562502 11562544 -177717010 + T-rich Low_complexity Low_complexity 3 46 0 2329 77 10 3 chr6 11562775 11563073 -177716481 + AluSc SINE Alu 1 300 -9 1978 103 47 23 chr6 11563680 11563980 -177715574 + AluSg SINE Alu 1 307 -3 489 34 0 0 chr6 11564643 11564702 -177714852 + (CA)n Simple_repeat Simple_repeat 1 59 0 2256 88 3 0 chr6 11564796 11565106 -177714448 + AluSp SINE Alu 1 311 0 230 186 10 157 chr6 11565508 11565610 -177713944 - MARNA DNA Mariner -224 362 276 2190 123 3 0 chr6 11565971 11566280 -177713274 - AluSp SINE Alu -3 310 1 454 212 12 0 chr6 11567541 11567626 -177711928 - MER58B DNA MER1_type -49 292 207 2216 112 0 7 chr6 11567636 11567932 -177711622 + AluSc SINE Alu 1 294 -15 721 219 133 34 chr6 11568460 11568693 -177710861 + MIR SINE MIR 5 260 -2 2287 109 3 0 chr6 11569161 11569472 -177710082 - AluSx SINE Alu 0 312 1 1170 47 0 0 chr6 11569474 11569603 -177709951 - AluSp SINE Alu -181 132 4 706 251 96 9 chr6 11570818 11571037 -177708517 - MIR SINE MIR -6 256 19 1454 183 29 18 chr6 11573208 11573518 -177706036 + AluJo SINE Alu 1 313 0 287 188 26 145 chr6 11573986 11574017 -177705537 - MIR SINE MIR 0 262 229 2060 128 0 46 chr6 11574017 11574344 -177705210 + AluJb SINE Alu 1 312 0 360 0 0 0 chr6 11574348 11574388 -177705166 + (TA)n Simple_repeat Simple_repeat 2 41 0 287 188 26 145 chr6 11574388 11574468 -177705086 - MIR SINE MIR -36 226 160 1821 134 144 0 chr6 11574889 11575188 -177704366 + Ricksha DNA DNA 9 350 -2896 666 267 61 58 chr6 11575256 11575323 -177704231 - L2 LINE L2 -508 2806 2741 2400 75 0 3 chr6 11575323 11575616 -177703938 - AluY SINE Alu -19 292 1 2272 91 14 3 chr6 11575616 11575913 -177703641 - AluSq SINE Alu -13 300 1 666 267 61 58 chr6 11575913 11576121 -177703433 - L2 LINE L2 -572 2742 2529 687 206 24 41 chr6 11576129 11576299 -177703255 + LTR9 LTR ERV1 446 612 0 722 157 64 0 chr6 11576324 11576470 -177703084 + HUERS-P3b LTR ERV1 3616 4588 -1242 * 1108 136 12 0 chr6 11576467 11576629 -177702925 + HUERS-P3b LTR ERV1 5894 6057 -1361 1094 147 28 0 chr6 11576628 11576796 -177702758 + HUERS-P3b LTR ERV1 3308 6617 -801 * 576 324 138 20 chr6 11576804 11577113 -177702441 - L2 LINE L2 -783 2531 2260 1127 184 29 19 chr6 11577113 11577183 -177702371 - MER3 DNA MER1_type 0 209 141 1586 161 97 7 chr6 11577183 11577462 -177702092 + AluSx SINE Alu 1 304 -8 1127 184 29 19 chr6 11577462 11577598 -177701956 - MER3 DNA MER1_type -68 141 1 576 324 138 20 chr6 11577598 11577942 -177701612 - L2 LINE L2 -1054 2260 1801 563 129 0 0 chr6 11578061 11578146 -177701408 + MER53 DNA DNA 1 85 -104 7481 136 26 11 chr6 11578149 11578435 -177701119 - Tigger3b DNA MER2_type -1797 1231 951 2330 117 0 0 chr6 11578435 11578744 -177700810 + AluSp SINE Alu 1 309 -4 7481 136 26 11 chr6 11578744 11578989 -177700565 - Tigger3b DNA MER2_type -2077 951 711 246 32 0 0 chr6 11578989 11579020 -177700534 + (TA)n Simple_repeat Simple_repeat 1 31 0 3864 68 4 19 chr6 11579021 11579537 -177700017 - L1PA8 LINE L1 -13 6159 5652 7481 136 26 11 chr6 11579537 11580212 -177699342 - Tigger3b DNA MER2_type -2316 712 4 358 161 138 0 chr6 11580215 11580302 -177699252 + MER53 DNA DNA 87 185 -4 21 0 0 0 chr6 11580428 11580449 -177699105 + AT_rich Low_complexity Low_complexity 1 21 0 706 207 18 18 chr6 11581531 11581695 -177697859 + FAM SINE Alu 1 164 -11 273 267 139 10 chr6 11582353 11582454 -177697100 - L2 LINE L2 -7 3306 3193 2381 93 0 10 chr6 11582468 11582778 -177696776 - AluSx SINE Alu -5 307 1 2218 97 24 0 chr6 11582787 11583077 -177696477 - AluY SINE Alu -14 297 1 21 36 0 0 chr6 11583403 11583431 -177696123 + AT_rich Low_complexity Low_complexity 1 28 0 4465 182 32 23 chr6 11583752 11583824 -177695730 + L1MC3 LINE L1 6806 6876 -909 2539 176 42 33 chr6 11583824 11583928 -177695626 - MER66B LTR ERV1 0 486 384 2123 111 10 0 chr6 11583928 11584217 -177695337 - AluSx SINE Alu -20 292 1 2539 176 42 33 chr6 11584217 11584594 -177694960 - MER66B LTR ERV1 -102 384 1 4465 182 32 23 chr6 11584594 11585383 -177694171 + L1MC3 LINE L1 6876 7679 -106 2457 129 67 5 chr6 11585383 11585786 -177693768 + MSTA LTR MaLR 1 428 0 4465 182 32 23 chr6 11585786 11585884 -177693670 + L1MC3 LINE L1 7679 7775 -10 2225 114 0 3 chr6 11585884 11586190 -177693364 + AluSq SINE Alu 1 305 -8 1542 159 3 28 chr6 11586199 11586489 -177693065 + L1MA3 LINE L1 5798 6080 -225 1354 207 45 25 chr6 11586489 11586802 -177692752 - MLT2C2 LTR ERVL -39 481 120 2199 101 13 16 chr6 11587524 11587832 -177691722 - AluSp SINE Alu -6 307 1 2359 104 0 0 chr6 11587848 11588155 -177691399 - AluSc SINE Alu -2 307 1 332 117 6 17 chr6 11588403 11588445 -177691109 - MLT2C1 LTR ERVL -5 657 616 438 20 0 0 chr6 11588445 11588496 -177691058 + (TG)n Simple_repeat Simple_repeat 2 52 0 332 117 6 17 chr6 11588496 11588524 -177691030 - MLT2C1 LTR ERVL -46 616 474 2140 164 25 3 chr6 11588609 11588961 -177690593 - MLT2C1 LTR ERVL -40 480 1 704 323 48 20 chr6 11588989 11589342 -177690212 + L2 LINE L2 2947 3309 -4 485 327 108 35 chr6 11589360 11589758 -177689796 - L3 LINE CR1 -156 1421 995 2089 122 20 10 chr6 11589759 11589926 -177689628 - AluSq SINE Alu -7 306 133 2267 81 42 0 chr6 11589926 11590211 -177689343 - AluSg1 SINE Alu -12 297 1 2089 122 20 10 chr6 11590211 11590346 -177689208 - AluSq SINE Alu -180 133 1 269 209 0 47 chr6 11590477 11590625 -177688929 + G-rich Low_complexity Low_complexity 3 143 0 1287 139 23 59 chr6 11590625 11590916 -177688638 - MER52C LTR ERV1 -772 506 91 710 221 27 72 chr6 11590916 11591138 -177688416 - L2 LINE L2 -895 2419 2208 4805 43 33 41 chr6 11591772 11592825 -177686729 - MER11A LTR ERVK 0 1266 1 1072 277 28 52 chr6 11592995 11593141 -177686413 + L1ME LINE L1 4 152 -5918 1837 114 103 4 chr6 11593141 11593412 -177686142 + AluSx SINE Alu 1 298 -14 1072 277 28 52 chr6 11593412 11593691 -177685863 + L1ME LINE L1 152 419 -5651 783 253 42 35 chr6 11593958 11594409 -177685145 + L1ME LINE L1 531 984 -5086 2315 84 0 29 chr6 11594409 11594717 -177684837 + AluSc SINE Alu 1 299 -10 24 32 0 0 chr6 11594812 11594843 -177684711 + AT_rich Low_complexity Low_complexity 1 31 0 2338 102 3 0 chr6 11595673 11595976 -177683578 + AluSp SINE Alu 1 304 -9 2667 130 28 35 chr6 11596115 11596212 -177683342 - L1MB1 LINE L1 -153 6036 5940 1959 143 0 3 chr6 11596212 11596499 -177683055 - AluJb SINE Alu -16 296 11 2667 130 28 35 chr6 11596499 11596833 -177682721 - L1MB1 LINE L1 -249 5940 5606 2364 87 0 19 chr6 11596833 11597145 -177682409 - AluSx SINE Alu -4 308 3 2667 130 28 35 chr6 11597145 11597173 -177682381 - L1MB1 LINE L1 -583 5606 5579 1453 143 4 39 chr6 11597175 11597454 -177682100 + L1MC3 LINE L1 7514 7782 -3 1931 108 73 14 chr6 11597675 11597962 -177681592 + AluSx SINE Alu 1 304 -8 2340 105 3 6 chr6 11597962 11598276 -177681278 + AluSq SINE Alu 1 313 0 215 268 24 37 chr6 11599011 11599093 -177680461 + L3 LINE CR1 1230 1310 -267 2516 83 0 0 chr6 11599108 11599410 -177680144 - AluSx SINE Alu -10 302 1 719 285 88 53 chr6 11599417 11599792 -177679762 - MLT1K LTR MaLR -16 572 185 2164 128 0 7 chr6 11599825 11600129 -177679425 + AluSx SINE Alu 1 302 -10 308 276 89 8 chr6 11600211 11600334 -177679220 + L3 LINE CR1 1336 1468 -109 249 257 22 44 chr6 11600413 11600549 -177679005 + L2 LINE L2 2553 2685 -629 788 281 106 13 chr6 11600564 11600866 -177678688 - L2 LINE L2 0 3313 2984 2564 137 15 36 chr6 11600938 11601019 -177678535 + L1MA8 LINE L1 5827 5908 -383 2087 136 0 19 chr6 11601019 11601327 -177678227 + AluSx SINE Alu 1 302 -10 2564 137 15 36 chr6 11601327 11601718 -177677836 + L1MA8 LINE L1 5908 6289 -2 213 167 0 0 chr6 11601721 11601775 -177677779 + T-rich Low_complexity Low_complexity 1 54 0 246 326 0 0 chr6 11601794 11601880 -177677674 - L1MC4 LINE L1 -1005 7037 6952 2198 123 0 19 chr6 11601996 11602304 -177677250 - AluSq SINE Alu -11 302 1 426 276 64 70 chr6 11602383 11602840 -177676714 + L1MEd LINE L1 1094 1579 -4658 2360 87 7 7 chr6 11602840 11603149 -177676405 + AluY SINE Alu 1 309 -2 426 276 64 70 chr6 11603149 11603269 -177676285 + L1MEd LINE L1 1579 1698 -4539 1113 257 89 9 chr6 11603483 11603821 -177675733 - L1MC4a LINE L1 -1017 6791 6427 2305 111 0 0 chr6 11603840 11604137 -177675417 + AluSx SINE Alu 1 297 -15 402 240 32 19 chr6 11604167 11604321 -177675233 - L1MEd LINE L1 -4974 1145 990 452 259 152 32 chr6 11604346 11604694 -177674860 - L1MEd LINE L1 -5168 951 562 233 176 0 39 chr6 11604996 11605047 -177674507 + CT-rich Low_complexity Low_complexity 2 50 0 2317 89 0 29 chr6 11605838 11606153 -177673401 - AluSp SINE Alu -7 306 1 2235 96 0 0 chr6 11606170 11606452 -177673102 - AluSx SINE Alu -26 286 5 2896 147 4 7 chr6 11606468 11606932 -177672622 - L1PB3 LINE L1 -4 6150 5688 2057 96 0 4 chr6 11610693 11610963 -177668591 + AluSx SINE Alu 1 269 -43 2169 175 110 13 chr6 11610963 11611427 -177668127 + LTR22 LTR ERVK 1 509 0 222 37 0 0 chr6 11611447 11611474 -177668080 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2036 137 0 0 chr6 11612613 11612931 -177666623 - AluSx SINE Alu 0 318 1 1178 156 5 10 chr6 11613255 11613454 -177666100 - Tigger1 DNA MER2_type -4 2414 2217 1232 158 0 0 chr6 11613455 11613639 -177665915 + AluSx SINE Alu 1 184 -128 3136 140 16 26 chr6 11613645 11613984 -177665570 - Tigger1 DNA MER2_type -187 2231 1897 1448 85 73 170 chr6 11613984 11614313 -177665241 + AluSx SINE Alu 1 297 -15 3136 140 16 26 chr6 11614313 11614474 -177665080 - Tigger1 DNA MER2_type -521 1897 1736 1809 152 21 0 chr6 11614494 11614784 -177664770 - AluJo SINE Alu -16 296 1 22 0 0 0 chr6 11615273 11615295 -177664259 + AT_rich Low_complexity Low_complexity 1 22 0 2318 81 3 0 chr6 11615791 11616074 -177663480 + AluSg SINE Alu 1 284 -26 348 83 0 0 chr6 11616090 11616138 -177663416 + (CA)n Simple_repeat Simple_repeat 1 48 0 2052 102 76 0 chr6 11616138 11616413 -177663141 + AluSx SINE Alu 1 296 -16 820 235 0 6 chr6 11616663 11616842 -177662712 - AluJb SINE Alu -6 306 129 1290 140 27 31 chr6 11617008 11617230 -177662324 - MLT1F LTR MaLR -8 534 314 1326 162 9 0 chr6 11617230 11617446 -177662108 - MLT1B LTR MaLR -4 386 169 1133 201 0 19 chr6 11617450 11617659 -177661895 - AluJo SINE Alu -21 291 87 991 173 6 0 chr6 11617659 11617827 -177661727 - MLT1B LTR MaLR -221 169 1 554 208 0 104 chr6 11617827 11617971 -177661583 - MLT1F LTR MaLR -222 320 192 1930 154 3 25 chr6 11618273 11618592 -177660962 + AluJb SINE Alu 1 312 0 2322 84 10 0 chr6 11619126 11619424 -177660130 - AluSp SINE Alu -12 301 1 270 179 36 0 chr6 11619491 11619547 -177660007 - MLT1J LTR MaLR -344 167 110 487 268 83 62 chr6 11620931 11621284 -177658270 - MLT1L LTR MaLR -83 532 95 2231 117 0 0 chr6 11622424 11622722 -177656832 + AluSx SINE Alu 1 298 -14 2338 101 0 0 chr6 11623785 11624082 -177655472 - AluSp SINE Alu -16 297 1 2605 53 0 0 chr6 11624085 11624388 -177655166 - AluY SINE Alu -8 303 1 1115 155 0 0 chr6 11624393 11624561 -177654993 - FAM SINE Alu -3 172 5 2178 125 0 0 chr6 11624678 11624975 -177654579 + AluSx SINE Alu 1 297 -15 2111 149 0 0 chr6 11625005 11625313 -177654241 + AluJb SINE Alu 1 308 -4 455 273 30 23 chr6 11625754 11625886 -177653668 - MIR SINE MIR -128 134 2 2483 63 0 10 chr6 11626120 11626423 -177653131 - AluY SINE Alu -11 300 1 2184 75 0 8 chr6 11626637 11626904 -177652650 - AluSg SINE Alu -45 265 1 2332 110 0 0 chr6 11627622 11627922 -177651632 - AluSx SINE Alu -12 300 1 216 0 0 0 chr6 11629100 11629124 -177650430 + (CA)n Simple_repeat Simple_repeat 2 25 0 193 184 0 0 chr6 11629183 11629221 -177650333 - L2 LINE L2 -10 3303 3266 1374 153 14 9 chr6 11629887 11630102 -177649452 + AluJb SINE Alu 5 220 -92 367 186 0 0 chr6 11630102 11630161 -177649393 + AluSp/q SINE Alu 155 213 -90 409 94 0 0 chr6 11630161 11630214 -177649340 - AluSq/x SINE Alu -172 141 89 * 567 152 0 0 chr6 11630209 11630301 -177649253 + AluSg/x SINE Alu 206 297 -15 330 26 0 0 chr6 11630302 11630341 -177649213 + (TA)n Simple_repeat Simple_repeat 2 40 0 460 213 147 37 chr6 11630356 11630492 -177649062 + MER33 DNA MER1_type 10 160 -164 809 138 0 9 chr6 11630494 11630610 -177648944 + AluJo/FLAM SINE Alu 3 117 -195 1882 147 0 27 chr6 11630613 11630913 -177648641 - AluJb SINE Alu -20 292 1 37 39 0 0 chr6 11630927 11630978 -177648576 + AT_rich Low_complexity Low_complexity 1 51 0 319 231 31 0 chr6 11630980 11631045 -177648509 - AluJ/FRAM SINE Alu -12 290 224 * 662 130 45 90 chr6 11631042 11631191 -177648363 + MER33 DNA MER1_type 154 295 -2290 2191 114 23 0 chr6 11631191 11631490 -177648064 - AluSg SINE Alu -4 306 1 662 130 45 90 chr6 11631490 11631517 -177648037 + MER33 DNA MER1_type 295 322 -2 2034 138 7 0 chr6 11631576 11631867 -177647687 - AluJb SINE Alu -19 293 1 2302 100 3 3 chr6 11631985 11632284 -177647270 + AluSq SINE Alu 1 299 -14 2437 83 0 19 chr6 11632804 11633117 -177646437 + AluSx SINE Alu 6 312 0 449 84 14 0 chr6 11633119 11633190 -177646364 + (TA)n Simple_repeat Simple_repeat 1 72 0 2084 104 0 17 chr6 11633198 11633487 -177646067 + AluSq SINE Alu 14 297 -16 1958 139 0 0 chr6 11634051 11634332 -177645222 - AluJb SINE Alu -27 285 5 2288 118 0 0 chr6 11634955 11635261 -177644293 + AluSx SINE Alu 1 306 -6 2099 114 40 3 chr6 11635615 11635914 -177643640 + AluSg SINE Alu 1 310 0 2448 100 0 0 chr6 11636126 11636436 -177643118 - AluSg SINE Alu 0 310 1 811 180 174 6 chr6 11636712 11636890 -177642664 + AluJb SINE Alu 86 293 -19 252 252 52 52 chr6 11636920 11637035 -177642519 + MIR SINE MIR 111 225 -37 210 71 0 0 chr6 11637634 11637662 -177641892 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 449 208 74 40 chr6 11637662 11637811 -177641743 - L2 LINE L2 -13 3300 3147 1384 234 116 48 chr6 11637812 11638172 -177641382 + L1ME3A LINE L1 5646 6049 -121 2293 87 0 13 chr6 11638172 11638472 -177641082 - AluSx SINE Alu -16 296 1 1384 234 116 48 chr6 11638472 11638595 -177640959 + L1ME3A LINE L1 6049 6162 -8 2279 99 10 0 chr6 11638614 11638917 -177640637 + AluSx SINE Alu 1 306 -6 269 177 81 0 chr6 11639185 11639247 -177640307 - L2 LINE L2 -707 2607 2541 1138 176 80 99 chr6 11639284 11639462 -177640092 - MSTB2 LTR MaLR 0 457 288 2217 81 34 14 chr6 11639462 11639597 -177639957 + AluSq SINE Alu 1 132 -181 2137 75 6 90 chr6 11639597 11639919 -177639635 + AluY SINE Alu 1 295 -16 2217 81 34 14 chr6 11639919 11640079 -177639475 + AluSq SINE Alu 132 302 -11 1138 176 80 99 chr6 11640079 11640252 -177639302 - MSTB2 LTR MaLR -169 288 113 648 204 55 11 chr6 11640256 11640433 -177639121 + MLT1C LTR MaLR 58 231 -159 358 127 0 0 chr6 11640438 11640501 -177639053 + L1MB8 LINE L1 6115 6177 -1 2776 172 37 57 chr6 11640516 11640661 -177638893 - MER6A DNA MER2_type -261 604 458 2086 102 53 3 chr6 11640661 11640946 -177638608 - AluSg SINE Alu -11 299 1 2776 172 37 57 chr6 11640946 11641393 -177638161 - MER6A DNA MER2_type -407 458 24 657 247 26 53 chr6 11641431 11641609 -177637945 - MER114 LTR ERV -427 221 49 2227 97 3 0 chr6 11641609 11641897 -177637657 + AluSq SINE Alu 1 289 -24 657 247 26 53 chr6 11641897 11641945 -177637609 - MER114 LTR ERV -599 49 1 2130 118 0 26 chr6 11642691 11642997 -177636557 - AluSx SINE Alu -14 298 1 2209 118 16 0 chr6 11643654 11643958 -177635596 + AluJb SINE Alu 4 312 0 618 201 158 18 chr6 11644444 11644608 -177634946 + MER105 DNA DNA 7 193 -11 2305 90 3 3 chr6 11645395 11645694 -177633860 - AluSp SINE Alu -14 299 1 21 36 0 0 chr6 11645904 11645932 -177633622 + AT_rich Low_complexity Low_complexity 1 28 0 1988 94 16 84 chr6 11645975 11646177 -177633377 - AluSq SINE Alu -15 298 124 2199 129 0 0 chr6 11646177 11646486 -177633068 - AluSx SINE Alu -3 309 1 1988 94 16 84 chr6 11646486 11646603 -177632951 - AluSq SINE Alu -189 124 1 742 191 0 15 chr6 11646649 11646780 -177632774 - FLAM_C SINE Alu -4 129 1 2004 114 22 4 chr6 11647135 11647452 -177632102 + AluSx SINE Alu 9 330 0 24 0 0 0 chr6 11647519 11647543 -177632011 + AT_rich Low_complexity Low_complexity 1 24 0 2455 84 10 0 chr6 11647839 11648137 -177631417 + AluSg SINE Alu 1 301 -9 995 265 0 5 chr6 11648705 11648920 -177630634 - MER20 DNA MER1_type -5 214 1 2130 137 0 0 chr6 11649428 11649728 -177629826 - AluSx SINE Alu -12 300 1 2227 116 0 3 chr6 11650487 11650789 -177628765 - AluSq SINE Alu -10 303 3 2231 100 34 0 chr6 11650791 11651082 -177628472 - AluSq SINE Alu -12 301 1 2237 103 3 0 chr6 11651227 11651541 -177628013 - AluSp SINE Alu 0 313 1 637 222 26 37 chr6 11651779 11651968 -177627586 + L2 LINE L2 3126 3312 -1 395 251 232 24 chr6 11652016 11652223 -177627331 - L3 LINE CR1 -157 1420 1171 281 280 130 10 chr6 11652765 11652965 -177626589 - L3 LINE CR1 -820 757 534 197 361 50 20 chr6 11653032 11653234 -177626320 - L3 LINE CR1 -1222 355 148 324 292 100 38 chr6 11653746 11653986 -177625568 - MLT1J LTR MaLR 0 511 257 237 214 71 0 chr6 11654045 11654101 -177625453 - MIR SINE MIR -114 148 89 2269 134 0 0 chr6 11654685 11654991 -177624563 + AluSx SINE Alu 1 306 -6 183 42 0 0 chr6 11655098 11655122 -177624432 + (TG)n Simple_repeat Simple_repeat 2 25 0 2100 170 115 3 chr6 11655128 11655511 -177624043 - MSTB LTR MaLR 0 426 1 339 225 295 25 chr6 11655996 11656196 -177623358 + Charlie2 DNA MER1_type 72 325 -2537 1609 122 106 47 chr6 11656220 11656295 -177623259 + MER44D DNA MER2_type 1 70 -2421 2189 99 14 3 chr6 11656295 11656587 -177622967 + AluSx SINE Alu 1 295 -17 1609 122 106 47 chr6 11656587 11656831 -177622723 + MER44D DNA MER2_type 70 609 0 192 77 0 0 chr6 11657070 11657096 -177622458 + (T)n Simple_repeat Simple_repeat 1 26 0 278 220 0 0 chr6 11657100 11657159 -177622395 + Charlie2a DNA MER1_type 72 130 -2652 729 183 89 0 chr6 11657185 11657354 -177622200 + Charlie2a DNA MER1_type 828 1011 -1851 429 194 37 19 chr6 11657359 11657467 -177622087 + Charlie2a DNA MER1_type 2753 2862 0 2241 114 0 13 chr6 11657493 11657801 -177621753 - AluSx SINE Alu -7 305 2 32 57 0 0 chr6 11657845 11657898 -177621656 + AT_rich Low_complexity Low_complexity 1 53 0 1585 169 83 4 chr6 11657970 11658236 -177621318 + AluJb SINE Alu 11 297 -15 2520 53 7 10 chr6 11658376 11658675 -177620879 - AluY SINE Alu -13 298 1 201 167 0 0 chr6 11658733 11658769 -177620785 + (TTA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr6 11659981 11660003 -177619551 + AT_rich Low_complexity Low_complexity 1 22 0 2260 99 3 0 chr6 11660005 11660289 -177619265 - AluSq SINE Alu -28 285 1 2236 82 4 0 chr6 11662201 11662513 -177617041 - AluY SINE Alu 0 313 1 634 316 118 24 chr6 11662514 11662980 -177616574 - L2 LINE L2 -597 2717 2208 2383 83 10 0 chr6 11663374 11663674 -177615880 + AluSx SINE Alu 1 303 -9 480 18 0 0 chr6 11663992 11664049 -177615505 + (TG)n Simple_repeat Simple_repeat 1 57 0 2143 90 14 4 chr6 11664049 11664326 -177615228 - AluSq SINE Alu -33 280 1 2366 106 0 0 chr6 11664528 11664830 -177614724 + AluSx SINE Alu 1 302 -10 2314 92 20 0 chr6 11665506 11665798 -177613756 + AluSc SINE Alu 2 299 -10 197 273 0 18 chr6 11666176 11666231 -177613323 - L2 LINE L2 -1 3271 3218 2323 83 6 19 chr6 11666264 11666576 -177612978 + AluSq SINE Alu 1 308 -5 2456 103 0 0 chr6 11667094 11667406 -177612148 - AluSx SINE Alu 0 312 1 581 317 104 38 chr6 11667566 11667713 -177611841 + L2 LINE L2 2816 2952 -320 961 32 113 0 chr6 11667713 11667837 -177611717 - MER85 DNA T2_type -1 138 1 581 317 104 38 chr6 11667837 11668112 -177611442 + L2 LINE L2 2952 3266 -6 2261 92 4 0 chr6 11668314 11668619 -177610935 + AluSp SINE Alu 1 306 0 2047 117 10 17 chr6 11668828 11669127 -177610427 - AluSx SINE Alu -15 297 1 1819 88 146 8 chr6 11669187 11669447 -177610107 - AluSg1 SINE Alu -13 296 1 2049 132 4 0 chr6 11670164 11670474 -177609080 + AluSx SINE Alu 1 311 0 258 106 136 30 chr6 11671056 11671122 -177608432 + MER66A LTR ERV1 302 374 -104 765 173 0 23 chr6 11671138 11671271 -177608283 + AluJb SINE Alu 5 134 -178 258 267 151 0 chr6 11671276 11671362 -177608192 + Charlie2 DNA MER1_type 44 142 -2720 2475 219 106 33 chr6 11671491 11672253 -177607301 + Charlie2 DNA MER1_type 1856 2700 -162 2192 107 0 29 chr6 11672253 11672561 -177606993 + AluSg SINE Alu 1 299 -11 2475 219 106 33 chr6 11672561 11672735 -177606819 + Charlie2 DNA MER1_type 2700 2860 -2 2360 93 0 10 chr6 11673609 11673921 -177605633 + AluSc SINE Alu 1 309 0 187 280 160 13 chr6 11674146 11674221 -177605333 + MIR SINE MIR 58 143 -119 186 103 0 0 chr6 11675477 11675506 -177604048 + (ATG)n Simple_repeat Simple_repeat 1 29 0 235 167 103 26 chr6 11675565 11675643 -177603911 - MIR SINE MIR -70 192 109 394 280 127 11 chr6 11675747 11675936 -177603618 + MIR SINE MIR 47 257 -5 565 265 116 5 chr6 11676331 11676546 -177603008 - MIR SINE MIR -1 261 23 1760 160 13 32 chr6 11677012 11677324 -177602230 - AluJo SINE Alu -6 306 1 2212 114 0 13 chr6 11677658 11677957 -177601597 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 11677959 11677980 -177601574 + AT_rich Low_complexity Low_complexity 1 21 0 2233 82 51 10 chr6 11678434 11678728 -177600826 - AluSc SINE Alu -3 306 1 293 253 32 21 chr6 11678882 11678977 -177600577 - MIR SINE MIR -33 229 134 2180 83 0 86 chr6 11680466 11680793 -177598761 + AluSq SINE Alu 1 299 -14 2303 102 0 10 chr6 11681120 11681423 -177598131 - AluSq SINE Alu -13 300 1 2187 102 3 20 chr6 11682368 11682672 -177596882 - AluSq SINE Alu -14 299 1 22 35 0 0 chr6 11682672 11682701 -177596853 + AT_rich Low_complexity Low_complexity 1 29 0 2126 130 0 7 chr6 11683605 11683906 -177595648 + AluSx SINE Alu 1 299 -13 2036 150 35 5 chr6 11683906 11684273 -177595281 - L1MC2 LINE L1 -30 6314 5934 1393 98 60 102 chr6 11684273 11684539 -177595015 + AluSx SINE Alu 58 312 0 1639 126 51 63 chr6 11684631 11684914 -177594640 + L1MC3 LINE L1 6686 6966 -819 2426 77 0 3 chr6 11684914 11685213 -177594341 + AluY SINE Alu 2 299 -12 1639 126 51 63 chr6 11685213 11685262 -177594292 + L1MC3 LINE L1 6966 7014 -771 186 71 0 0 chr6 11685263 11685291 -177594263 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 1886 118 4 0 chr6 11685300 11685554 -177594000 + AluSx SINE Alu 9 263 -49 1855 91 8 0 chr6 11685563 11685806 -177593748 + AluSp SINE Alu 63 307 -6 2256 138 11 17 chr6 11685836 11686198 -177593356 - LTR8 LTR ERV1 0 691 332 713 151 32 8 chr6 11686188 11686314 -177593240 + LTR19A LTR ERV1 358 486 0 * 1504 195 61 3 chr6 11686314 11686627 -177592927 + MER58B DNA MER1_type 9 339 -2 302 238 119 23 chr6 11686673 11686846 -177592708 + L1MC/D LINE L1 5530 5724 -545 478 139 0 0 chr6 11686846 11686918 -177592636 - AluS SINE Alu -241 72 1 2268 104 13 3 chr6 11687020 11687327 -177592227 + AluSq SINE Alu 1 310 -3 226 330 75 71 chr6 11687492 11687731 -177591823 + L2 LINE L2 3009 3248 -24 2400 91 0 0 chr6 11688228 11688525 -177591029 - AluSx SINE Alu -15 297 1 1439 175 35 14 chr6 11688783 11689068 -177590486 + AluJo SINE Alu 10 300 -12 2026 131 3 7 chr6 11690264 11690561 -177588993 - AluSx SINE Alu -16 296 1 460 311 84 41 chr6 11691474 11691985 -177587569 - L2 LINE L2 -27 3245 2717 633 165 0 0 chr6 11692008 11692105 -177587449 - AluSx SINE Alu -24 286 190 828 137 8 0 chr6 11692111 11692242 -177587312 - AluSx SINE Alu -181 132 1 419 314 268 18 chr6 11692244 11692915 -177586639 - L2 LINE L2 -601 2713 1875 2196 92 3 3 chr6 11692987 11693280 -177586274 - AluSp SINE Alu -20 293 1 668 101 7 130 chr6 11693307 11693445 -177586109 + 5S rRNA rRNA 1 121 0 1881 164 0 3 chr6 11693476 11693781 -177585773 + AluSx SINE Alu 1 304 -8 4796 34 0 4 chr6 11695388 11695948 -177583606 + LTR6B LTR ERV1 1 558 0 292 293 9 19 chr6 11696739 11696845 -177582709 - MIR SINE MIR -80 128 24 410 267 118 12 chr6 11697092 11697253 -177582301 + MIR SINE MIR 82 259 -3 1603 187 0 23 chr6 11697678 11697983 -177581571 + AluSx SINE Alu 1 298 -14 199 273 26 13 chr6 11699140 11699217 -177580337 + L2 LINE L2 2416 2493 -821 220 329 111 28 chr6 11699549 11699692 -177579862 - MIR SINE MIR -44 164 8 540 208 145 13 chr6 11700495 11700654 -177578900 - MIR SINE MIR -21 241 62 486 301 155 30 chr6 11700705 11701217 -177578337 + L2 LINE L2 2665 3313 0 2195 119 0 25 chr6 11701442 11701760 -177577794 + AluSx SINE Alu 1 310 -2 184 330 91 23 chr6 11701889 11701977 -177577577 + L2 LINE L2 3174 3267 -5 1604 170 43 7 chr6 11703051 11703327 -177576227 + AluJo SINE Alu 1 286 -26 1900 133 3 7 chr6 11703379 11703664 -177575890 - AluSg SINE Alu -26 284 1 1481 115 13 21 chr6 11703695 11703930 -177575624 - LTR12 LTR ERV1 0 714 482 3580 152 162 29 chr6 11703930 11704659 -177574895 - LTR12 LTR ERV1 0 826 1 2168 114 10 0 chr6 11704749 11705047 -177574507 - AluSq SINE Alu -12 301 1 1025 175 80 0 chr6 11705154 11705354 -177574200 + L1MDa LINE L1 16 231 -6309 1210 130 0 0 chr6 11705354 11705531 -177574023 + AluSg/x SINE Alu 123 299 -13 2202 91 50 0 chr6 11705554 11705851 -177573703 + AluSq SINE Alu 1 312 -1 617 242 89 111 chr6 11705888 11706302 -177573252 + L1MDa LINE L1 275 697 -5843 1797 130 26 0 chr6 11706302 11706571 -177572983 + AluSx SINE Alu 1 276 -36 2612 64 0 0 chr6 11706571 11706882 -177572672 - AluY SINE Alu 0 311 1 617 242 89 111 chr6 11706882 11706970 -177572584 + L1MDa LINE L1 695 1081 -5459 645 209 0 14 chr6 11706971 11707110 -177572444 + MER7A DNA MER2_type 2 136 -210 2236 106 0 0 chr6 11707110 11707420 -177572134 + AluSx SINE Alu 1 310 0 253 282 155 29 chr6 11707440 11707614 -177571940 - L2 LINE L2 -4 3309 3114 226 297 84 24 chr6 11707843 11708092 -177571462 - L1 LINE L1 -1797 4349 4086 2078 124 21 0 chr6 11708416 11708707 -177570847 + AluSx SINE Alu 2 298 -14 2206 107 0 0 chr6 11708709 11709013 -177570541 + AluSx SINE Alu 3 306 0 320 284 77 86 chr6 11709015 11709536 -177570018 + L1 LINE L1 4493 5006 -1140 * 472 176 123 65 chr6 11709512 11709682 -177569872 + L1MA7 LINE L1 6117 6287 -4 2062 131 3 3 chr6 11709745 11710035 -177569519 + AluSx SINE Alu 1 290 -22 956 112 15 0 chr6 11710043 11710177 -177569377 - LTR8 LTR ERV1 -544 147 12 2332 88 0 0 chr6 11710181 11710478 -177569076 + AluY SINE Alu 1 297 -14 275 234 66 66 chr6 11710547 11710774 -177568780 + L1 LINE L1 5164 5390 -756 1652 194 36 3 chr6 11710830 11711159 -177568395 + MER58B DNA MER1_type 1 340 -1 2272 87 10 7 chr6 11711366 11711664 -177567890 - AluSc SINE Alu -10 299 1 2438 88 0 0 chr6 11711666 11711972 -177567582 - AluSc SINE Alu -3 306 1 207 322 50 94 chr6 11712236 11712438 -177567116 + L2 LINE L2 3009 3201 -71 3171 126 50 116 chr6 11712440 11713176 -177566378 + LTR12 LTR ERV1 1 688 0 602 179 0 0 chr6 11713182 11713277 -177566277 + LTR12 LTR ERV1 620 714 0 2409 76 17 0 chr6 11714000 11714301 -177565253 - AluSx SINE Alu -6 306 1 270 179 36 0 chr6 11714368 11714424 -177565130 - MLT1J LTR MaLR -344 167 110 487 268 83 62 chr6 11715808 11716161 -177563393 - MLT1L LTR MaLR -83 532 95 2231 117 0 0 chr6 11717300 11717598 -177561956 + AluSx SINE Alu 1 298 -14 1015 136 26 26 chr6 11718205 11718396 -177561158 + L1MA9 LINE L1 6118 6308 -4 1405 301 72 22 chr6 11718412 11719216 -177560338 + L1M4 LINE L1 3876 4719 -1427 637 255 102 42 chr6 11719340 11719899 -177559655 + L1MEd LINE L1 1045 1670 -4726 903 254 88 64 chr6 11720133 11720640 -177558914 + L1MEd LINE L1 2037 2540 -3675 2377 105 3 0 chr6 11720640 11720945 -177558609 - AluSp SINE Alu -7 306 1 903 254 88 64 chr6 11720945 11721418 -177558136 + L1MEd LINE L1 2540 3000 -3215 2312 109 0 0 chr6 11721419 11721721 -177557833 + AluSx SINE Alu 1 302 -10 23 54 0 0 chr6 11723180 11723217 -177556337 + GC_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr6 11723739 11723760 -177555794 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 0 0 0 chr6 11723794 11723823 -177555731 + (TG)n Simple_repeat Simple_repeat 2 30 0 531 261 29 85 chr6 11724114 11724386 -177555168 + L2 LINE L2 3052 3308 -5 2044 141 0 10 chr6 11724894 11725200 -177554354 - AluSx SINE Alu -9 303 1 337 310 244 0 chr6 11726309 11726506 -177553048 + MIR SINE MIR 17 261 -1 1411 181 79 3 chr6 11726604 11726896 -177552658 - MER33 DNA MER1_type -4 320 7 1089 177 47 0 chr6 11727553 11727785 -177551769 + L1MA4 LINE L1 6054 6296 -4 333 308 84 11 chr6 11727927 11728088 -177551466 + MIR SINE MIR 20 192 -65 24 0 0 0 chr6 11728369 11728393 -177551161 + AT_rich Low_complexity Low_complexity 1 24 0 1038 110 0 0 chr6 11728711 11728882 -177550672 - AluSc SINE Alu 0 316 146 233 208 38 0 chr6 11729100 11729153 -177550401 - MIR SINE MIR -147 115 61 217 213 33 0 chr6 11729314 11729375 -177550179 + (TA)n Simple_repeat Simple_repeat 1 63 0 758 182 6 3 chr6 11729968 11730300 -177549254 + CT-rich Low_complexity Low_complexity 1 333 0 251 241 9 103 chr6 11731787 11731903 -177547651 + MER5A DNA MER1_type 40 144 -45 209 184 0 0 chr6 11732150 11732188 -177547366 + L2 LINE L2 3219 3256 -16 2188 94 0 4 chr6 11732188 11732499 -177547055 - AluSx SINE Alu 0 318 9 2192 108 0 7 chr6 11732518 11732826 -177546728 - AluSx SINE Alu 0 312 2 194 348 11 11 chr6 11734115 11734207 -177545347 - L2 LINE L2 -411 2902 2811 452 261 84 28 chr6 11734421 11734563 -177544991 + L2 LINE L2 3163 3312 -1 246 220 40 0 chr6 11734640 11734690 -177544864 + MER2 DNA MER2_type 294 345 0 304 296 38 8 chr6 11735300 11735432 -177544122 + L1ME3A LINE L1 4877 5012 -1134 532 275 127 31 chr6 11735594 11736227 -177543327 + L1ME3A LINE L1 5217 5950 -214 2306 60 3 7 chr6 11736435 11736717 -177542837 + AluY SINE Alu 1 305 -32 207 0 0 0 chr6 11736717 11736740 -177542814 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2306 60 3 7 chr6 11736740 11736773 -177542781 + AluY SINE Alu 305 337 0 1123 110 0 7 chr6 11736775 11736956 -177542598 + AluSg/x SINE Alu 129 308 0 22 35 0 0 chr6 11737338 11737367 -177542187 + AT_rich Low_complexity Low_complexity 1 29 0 748 178 0 74 chr6 11737368 11737531 -177542023 - FRAM SINE Alu -26 150 1 2364 99 0 0 chr6 11738078 11738380 -177541174 - AluSx SINE Alu -10 302 1 24 0 0 0 chr6 11738444 11738468 -177541086 + AT_rich Low_complexity Low_complexity 1 24 0 1395 171 96 56 chr6 11739159 11739639 -177539915 + L1MC5 LINE L1 7046 7544 -417 1499 136 0 0 chr6 11739681 11739894 -177539660 - AluSg/x SINE Alu -15 295 83 27 29 0 0 chr6 11792237 11792271 -177487283 + AT_rich Low_complexity Low_complexity 1 34 0 275 217 96 48 chr6 11793538 11793621 -177485933 - L1MEd LINE L1 -5450 669 583 2570 56 0 40 chr6 11793984 11794308 -177485246 + AluY SINE Alu 1 311 0 423 268 178 5 chr6 11794457 11794670 -177484884 - MIR SINE MIR 0 262 13 185 232 89 0 chr6 11795220 11795276 -177484278 - L2 LINE L2 -6 3307 3247 182 367 50 0 chr6 11795435 11795555 -177483999 - L2 LINE L2 -222 3050 2925 603 203 115 14 chr6 11795686 11795834 -177483720 + Charlie8 DNA MER1_type 9 171 -2246 2374 97 0 0 chr6 11797623 11797934 -177481620 - AluY SINE Alu 0 311 1 192 40 0 0 chr6 11797934 11797959 -177481595 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2263 95 3 0 chr6 11797959 11798243 -177481311 - AluSq SINE Alu -27 286 2 2163 119 17 3 chr6 11799801 11800096 -177479458 + AluSq SINE Alu 1 299 -14 1979 146 6 25 chr6 11800619 11800934 -177478620 - AluSx SINE Alu -3 309 1 2547 78 0 3 chr6 11800997 11801304 -177478250 - AluSc SINE Alu -3 306 1 1855 148 20 10 chr6 11801925 11802228 -177477326 - AluJb SINE Alu -6 306 1 193 338 14 0 chr6 11802327 11802398 -177477156 - MIR SINE MIR -115 147 76 391 236 62 81 chr6 11804131 11804292 -177475262 + MIR3 SINE MIR 3 160 -48 2391 98 0 0 chr6 11804712 11805009 -177474545 + AluSg SINE Alu 1 297 -13 252 172 0 0 chr6 11806384 11806442 -177473112 + CT-rich Low_complexity Low_complexity 1 58 0 201 132 0 0 chr6 11806670 11806708 -177472846 + (AAATG)n Simple_repeat Simple_repeat 1 38 0 292 228 216 9 chr6 11806719 11806827 -177472727 + MIR SINE MIR 40 167 -58 2529 61 3 0 chr6 11807041 11807335 -177472219 + AluY SINE Alu 1 295 -16 210 314 23 0 chr6 11807911 11807997 -177471557 - MIR SINE MIR 0 262 175 216 280 173 40 chr6 11808071 11808221 -177471333 - MIR3 SINE MIR -9 199 30 23 54 0 0 chr6 11808888 11808925 -177470629 + AT_rich Low_complexity Low_complexity 1 37 0 1255 207 81 25 chr6 11811174 11811580 -177467974 + L1ME1 LINE L1 4833 5261 -885 2645 222 30 27 chr6 11811686 11812385 -177467169 + L1ME1 LINE L1 5448 6148 -18 1438 243 49 19 chr6 11812387 11812819 -177466735 + L1ME1 LINE L1 2146 2590 -3556 2183 228 65 37 chr6 11812847 11813358 -177466196 + L1ME1 LINE L1 5517 6051 -115 777 252 39 24 chr6 11813358 11813564 -177465990 + MER3 DNA MER1_type 1 209 0 2183 228 65 37 chr6 11813564 11813679 -177465875 + L1ME1 LINE L1 6051 6161 -5 1505 203 122 3 chr6 11814401 11814755 -177464799 - MSTD LTR MaLR 0 396 1 240 232 0 43 chr6 11815060 11815129 -177464425 + GA-rich Low_complexity Low_complexity 3 68 0 268 236 90 83 chr6 11815303 11815374 -177464180 - MER103 DNA DNA -19 147 78 2491 96 0 0 chr6 11815374 11815686 -177463868 + AluSx SINE Alu 1 312 0 268 236 90 83 chr6 11815686 11815758 -177463796 - MER103 DNA DNA -88 78 3 338 277 103 33 chr6 11816467 11816651 -177462903 - MIR SINE MIR -3 259 63 2383 92 0 10 chr6 11817116 11817430 -177462124 + AluSx SINE Alu 1 311 -1 188 258 16 16 chr6 11817694 11817756 -177461798 + L2 LINE L2 2790 2851 -463 730 306 86 40 chr6 11817996 11818515 -177461039 - L2 LINE L2 0 3313 2820 306 0 0 0 chr6 11818515 11818549 -177461005 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2060 98 4 0 chr6 11818559 11818825 -177460729 - AluSg SINE Alu -43 267 1 1454 188 16 46 chr6 11818828 11819131 -177460423 - AluJo SINE Alu -18 294 1 730 306 86 40 chr6 11819131 11819465 -177460089 - L2 LINE L2 -502 2811 2400 2289 94 17 0 chr6 11819725 11820138 -177459416 + AluSg SINE Alu 1 418 0 287 183 0 17 chr6 11821638 11821698 -177457856 - AluSq SINE Alu -6 294 236 4071 128 69 40 chr6 11821701 11823064 -177456490 - pTR5 LTR ERV1 0 2438 743 1624 88 66 0 chr6 11823064 11823290 -177456264 - AluSq SINE Alu -72 241 1 2362 104 0 19 chr6 11824155 11824464 -177455090 - AluSx SINE Alu -9 303 1 1126 257 139 47 chr6 11825179 11825875 -177453679 + L1MC4 LINE L1 7283 8042 0 466 271 106 37 chr6 11825912 11826130 -177453424 + MIR SINE MIR 20 252 -10 2303 113 0 0 chr6 11827426 11827726 -177451828 - AluSx SINE Alu -12 300 1 2356 101 0 0 chr6 11827999 11828297 -177451257 - AluSx SINE Alu -14 298 1 358 322 28 7 chr6 11829266 11829409 -177450145 + L2 LINE L2 3164 3309 -4 2231 103 0 17 chr6 11830002 11830337 -177449217 - AluSx SINE Alu 0 312 1 728 139 9 0 chr6 11830358 11830466 -177449088 - FRAM SINE Alu -37 139 31 24 0 0 29 chr6 11830508 11830520 -177449034 + AT_rich Low_complexity Low_complexity 1 12 -22 2158 110 3 3 chr6 11830520 11830811 -177448743 - AluSq SINE Alu -22 291 1 24 0 0 29 chr6 11830811 11830833 -177448721 + AT_rich Low_complexity Low_complexity 12 34 0 1887 162 87 0 chr6 11830842 11831187 -177448367 - L1MB2 LINE L1 -51 6120 5746 287 329 83 24 chr6 11831510 11831762 -177447792 + L2 LINE L2 2412 2678 -636 233 229 31 52 chr6 11833192 11833288 -177446266 + A-rich Low_complexity Low_complexity 2 95 0 4763 180 73 22 chr6 11833347 11835139 -177444415 - L1MB8 LINE L1 -229 5949 4067 938 285 106 65 chr6 11835131 11836094 -177443460 - L1MC4 LINE L1 -881 6910 5956 * 1428 254 50 48 chr6 11836102 11836626 -177442928 - L1MB8 LINE L1 -2019 4127 3603 250 241 23 46 chr6 11836609 11836696 -177442858 - L1MEc LINE L1 -2260 3955 3871 * 265 249 133 65 chr6 11836846 11837199 -177442355 - L1MEc LINE L1 -4143 2253 1877 257 340 0 0 chr6 11837336 11837442 -177442112 - L1MEc LINE L1 -4580 1816 1711 252 294 0 0 chr6 11837466 11837534 -177442020 - L1ME1 LINE L1 -53 6113 6046 1287 284 38 42 chr6 11837536 11838255 -177441299 - L1MEc LINE L1 -4671 1725 1010 2132 93 0 93 chr6 11838338 11838672 -177440882 - AluSq SINE Alu -10 303 1 807 84 0 0 chr6 11839531 11839638 -177439916 + AluSg/x SINE Alu 191 297 -13 1206 279 94 29 chr6 11840202 11840714 -177438840 - L1MC4 LINE L1 -2009 5782 5238 1256 297 89 40 chr6 11840731 11841903 -177437651 - L1MC4 LINE L1 -913 5216 3984 216 0 0 0 chr6 11841903 11841927 -177437627 + (CA)n Simple_repeat Simple_repeat 1 24 0 1256 297 89 40 chr6 11841927 11841947 -177437607 - L1MC4 LINE L1 -2145 3984 3966 303 286 49 70 chr6 11841961 11842146 -177437408 - L1MC4 LINE L1 -5416 703 523 220 211 0 0 chr6 11843050 11843102 -177436452 + A-rich Low_complexity Low_complexity 5 56 0 2134 104 16 0 chr6 11843354 11843661 -177435893 + AluSx SINE Alu 1 312 0 439 317 91 55 chr6 11843883 11844321 -177435233 + L1MEd LINE L1 12 465 -5654 254 242 32 38 chr6 11844346 11844473 -177435081 + L1 LINE L1 4933 5057 -1089 1958 101 9 75 chr6 11844577 11844895 -177434659 + AluSq SINE Alu 2 298 -15 484 128 26 26 chr6 11845155 11845272 -177434282 + GA-rich Low_complexity Low_complexity 1 117 0 413 280 103 71 chr6 11845284 11845366 -177434188 - LTR67 LTR ERVL -5 552 474 1644 155 54 4 chr6 11845366 11845643 -177433911 + AluJb SINE Alu 1 291 -21 413 280 103 71 chr6 11845643 11845985 -177433569 - LTR67 LTR ERVL -83 474 114 1586 107 61 61 chr6 11845998 11846259 -177433295 - AluSg SINE Alu -6 304 44 1189 182 129 53 chr6 11846485 11846552 -177433002 - MLT1B LTR MaLR -1 389 328 2426 82 0 7 chr6 11846552 11846856 -177432698 + AluSp SINE Alu 1 302 -11 1189 182 129 53 chr6 11846856 11847145 -177432409 - MLT1B LTR MaLR -62 328 6 424 218 23 68 chr6 11847170 11847303 -177432251 - MER5A DNA MER1_type -30 159 33 2319 97 3 7 chr6 11848553 11848861 -177430693 + AluSx SINE Alu 1 307 -5 374 236 16 55 chr6 11849118 11849245 -177430309 - MER94 DNA DNA -12 122 1 638 179 32 8 chr6 11850311 11850434 -177429120 - MIR SINE MIR -30 232 107 287 375 180 0 chr6 11850505 11850705 -177428849 - L2 LINE L2 -747 2567 2332 2198 121 10 0 chr6 11850756 11851063 -177428491 + AluSx SINE Alu 1 310 -2 459 141 0 0 chr6 11851068 11851146 -177428408 + (GAA)n Simple_repeat Simple_repeat 2 79 0 295 228 166 0 chr6 11851247 11851362 -177428192 - MIR SINE MIR -63 145 38 314 350 94 0 chr6 11851465 11851625 -177427929 + L2 LINE L2 2455 2629 -685 1912 166 67 52 chr6 11851864 11851913 -177427641 - MSTB1 LTR MaLR -1 431 384 2487 81 0 0 chr6 11851913 11852222 -177427332 - AluSc SINE Alu 0 309 1 1912 166 67 52 chr6 11852222 11852593 -177426961 - MSTB1 LTR MaLR -48 384 5 1504 141 120 86 chr6 11852598 11852813 -177426741 - MSTD LTR MaLR -1 395 160 1967 74 0 0 chr6 11852813 11853055 -177426499 + AluSx SINE Alu 56 297 -15 1504 141 120 86 chr6 11853055 11853221 -177426333 - MSTD LTR MaLR -236 160 1 316 302 137 88 chr6 11853227 11854024 -177425530 + L2 LINE L2 2141 2976 -338 207 291 191 33 chr6 11854540 11854750 -177424804 + L2 LINE L2 943 1185 -2129 1622 175 93 8 chr6 11858043 11858409 -177421145 - HsTC2 DNA Tc2 0 1900 1328 * 3844 157 45 5 chr6 11858407 11859055 -177420499 - HsTC2 DNA Tc2 -1224 674 1 21 82 0 0 chr6 11859633 11859682 -177419872 + AT_rich Low_complexity Low_complexity 1 49 0 224 367 76 0 chr6 11859700 11859779 -177419775 - L2 LINE L2 -38 3234 3150 216 237 62 82 chr6 11860869 11860966 -177418588 + MIR SINE MIR 164 258 -4 4824 177 27 21 chr6 11861015 11862608 -177416946 - L1MB7 LINE L1 -19 6165 4562 21 0 0 0 chr6 11862617 11862638 -177416916 + AT_rich Low_complexity Low_complexity 1 21 0 235 254 0 0 chr6 11863606 11863661 -177415893 - LTR67 LTR ERVL -490 67 13 189 0 0 0 chr6 11863668 11863689 -177415865 + (TTG)n Simple_repeat Simple_repeat 2 22 0 842 158 51 6 chr6 11864173 11864350 -177415204 + L1MA4 LINE L1 4695 4879 -1267 2948 134 15 11 chr6 11864353 11864829 -177414725 + L1MA4 LINE L1 5584 6061 -239 * 17975 148 30 32 chr6 11864823 11866093 -177413461 + L1M1 LINE L1 13 1284 -6281 303 29 0 0 chr6 11866093 11866128 -177413426 + THE1A LTR MaLR 1 35 -320 17975 148 30 32 chr6 11866128 11866143 -177413411 + L1M1 LINE L1 1284 1298 -6267 2161 120 45 58 chr6 11866143 11866502 -177413052 + THE1A LTR MaLR 2 355 0 17975 148 30 32 chr6 11866502 11867609 -177411945 + L1M1 LINE L1 1298 2405 -5160 2344 101 0 0 chr6 11867609 11867916 -177411638 + AluSg SINE Alu 1 307 -3 17975 148 30 32 chr6 11867916 11868317 -177411237 + L1M1 LINE L1 2405 2805 -4760 207 0 0 0 chr6 11868317 11868340 -177411214 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2242 101 0 24 chr6 11868345 11868643 -177410911 - AluSx SINE Alu -21 291 1 2277 88 0 53 chr6 11868643 11868961 -177410593 - AluSx SINE Alu -11 301 1 17975 148 30 32 chr6 11868961 11869171 -177410383 + L1M1 LINE L1 2807 3055 -4510 5895 112 27 26 chr6 11869161 11870089 -177409465 + L1MA3 LINE L1 5377 6305 0 * 1122 122 37 0 chr6 11870094 11870283 -177409271 + L1MA5 LINE L1 6103 6298 -2 804 159 8 0 chr6 11870904 11871030 -177408524 - FLAM_C SINE Alu -16 127 1 355 216 72 79 chr6 11871692 11871831 -177407723 + MER5B DNA MER1_type 24 161 -17 200 286 82 20 chr6 11873141 11873239 -177406315 - MIR SINE MIR -95 167 64 2486 131 3 29 chr6 11873340 11873715 -177405839 + MLT1A1 LTR MaLR 1 365 0 191 255 16 136 chr6 11874188 11874288 -177405266 + L2 LINE L2 2147 2217 -1097 2396 68 0 0 chr6 11874288 11874584 -177404970 - AluY SINE Alu -15 296 1 191 255 16 136 chr6 11874584 11874667 -177404887 + L2 LINE L2 2217 2308 -1006 197 83 28 0 chr6 11874676 11874712 -177404842 + (GA)n Simple_repeat Simple_repeat 1 37 0 621 238 92 5 chr6 11874999 11875184 -177404370 + MIR SINE MIR 56 256 -6 189 345 36 64 chr6 11875390 11875500 -177404054 + L2 LINE L2 3183 3289 -24 327 271 76 0 chr6 11875675 11875793 -177403761 + L1ME1 LINE L1 2614 2740 -3406 979 110 0 0 chr6 11875794 11875921 -177403633 + AluSq/x SINE Alu 9 135 -178 1968 125 48 0 chr6 11875921 11876210 -177403344 + AluSx SINE Alu 1 303 -9 693 204 43 48 chr6 11876210 11876440 -177403114 + L1ME1 LINE L1 2718 2946 -3200 2379 54 9 47 chr6 11876482 11876799 -177402755 + AluYa5 SINE Alu 1 305 -6 1352 84 0 0 chr6 11876799 11876977 -177402577 + AluSc SINE Alu 132 309 0 1399 247 88 15 chr6 11876987 11877510 -177402044 + L1ME1 LINE L1 3013 3573 -2573 462 235 84 0 chr6 11877517 11877636 -177401918 + MLT1E1 LTR MaLR 1 129 -464 2166 126 7 3 chr6 11877638 11877948 -177401606 + AluSx SINE Alu 1 311 -1 2360 102 0 6 chr6 11877970 11878285 -177401269 + AluSp SINE Alu 1 313 0 1773 200 209 3 chr6 11878292 11878762 -177400792 + MLT1E1 LTR MaLR 103 654 0 1418 234 79 62 chr6 11878774 11879057 -177400497 + L1ME1 LINE L1 3589 3866 -2280 2312 118 0 3 chr6 11879057 11879370 -177400184 + AluSx SINE Alu 1 312 0 1418 234 79 62 chr6 11879370 11879694 -177399860 + L1ME1 LINE L1 3866 4206 -1940 2215 96 0 7 chr6 11879697 11879989 -177399565 + AluSx SINE Alu 21 310 -2 1672 188 143 70 chr6 11880011 11880080 -177399474 + L1ME1 LINE L1 5127 5190 -976 2165 129 0 3 chr6 11880080 11880382 -177399172 + AluSx SINE Alu 1 301 -11 1672 188 143 70 chr6 11880382 11880839 -177398715 + L1ME1 LINE L1 5190 5734 -432 2124 90 0 74 chr6 11880839 11881151 -177398403 + AluSx SINE Alu 14 302 -10 1672 188 143 70 chr6 11881151 11881400 -177398154 + L1ME1 LINE L1 5734 5963 -203 2114 126 7 3 chr6 11881404 11881698 -177397856 + AluSx SINE Alu 1 295 -17 3214 123 21 12 chr6 11881739 11882250 -177397304 + MER50 LTR ERV1 1 516 -218 9858 190 30 57 chr6 11882256 11886621 -177392933 + MER50-int LTR ERV1 15 3918 -3173 1153 305 81 66 chr6 11886632 11888152 -177391402 + MER50-int LTR ERV1 4526 6206 -885 260 308 135 19 chr6 11888313 11888469 -177391085 + MER50-int LTR ERV1 6158 6331 -1926 8085 118 3 2 chr6 11889342 11890506 -177389048 + MER50-int LTR ERV1 3880 7197 -8 4034 164 40 8 chr6 11890507 11891212 -177388342 + MER50 LTR ERV1 1 727 -7 842 210 51 5 chr6 11891204 11891492 -177388062 + MER93b LTR ERV1 40 373 0 * 2655 113 49 58 chr6 11891718 11891919 -177387635 + LTR26B LTR ERV1 1 202 -329 2072 104 7 3 chr6 11891919 11892217 -177387337 + AluSg SINE Alu 1 299 -11 2655 113 49 58 chr6 11892217 11892501 -177387053 + LTR26B LTR ERV1 202 482 -49 218 279 33 0 chr6 11892604 11892665 -177386889 - MIR SINE MIR -139 123 61 1299 261 94 39 chr6 11892715 11893429 -177386125 + HAL1 LINE L1 1045 1797 -710 2205 106 0 0 chr6 11893597 11893908 -177385646 + AluY SINE Alu 1 311 0 740 207 53 24 chr6 11894324 11894484 -177385070 - L2 LINE L2 0 3313 3146 2205 86 0 0 chr6 11894484 11894774 -177384780 + AluSc SINE Alu 1 290 -19 303 322 66 0 chr6 11894786 11894907 -177384647 - L2 LINE L2 -1034 2280 2152 388 327 89 60 chr6 11895121 11895224 -177384330 - L2 LINE L2 -1201 2113 2014 1973 135 3 3 chr6 11895224 11895528 -177384026 + AluSq SINE Alu 1 304 -9 388 327 89 60 chr6 11895528 11895739 -177383815 - L2 LINE L2 -1300 2014 1790 201 264 0 56 chr6 11895828 11895900 -177383654 + L2 LINE L2 3245 3312 -1 1522 140 92 54 chr6 11896187 11896272 -177383282 + MLT1B LTR MaLR 1 81 -309 1883 129 0 39 chr6 11896272 11896583 -177382971 - AluSq SINE Alu -14 299 1 1522 140 92 54 chr6 11896583 11896812 -177382742 + MLT1B LTR MaLR 81 327 -63 1050 84 7 7 chr6 11896818 11896961 -177382593 + AluSp SINE Alu 1 143 -170 2097 100 30 0 chr6 11896966 11897265 -177382289 + AluSp SINE Alu 1 308 -5 432 96 27 41 chr6 11897274 11897347 -177382207 + MLT1B LTR MaLR 317 388 -2 1624 138 28 16 chr6 11897574 11897828 -177381726 + MER1B DNA MER1_type 83 339 0 201 288 0 30 chr6 11898293 11898305 -177381249 + (CATA)n Simple_repeat Simple_repeat 4 15 -52 2041 104 0 36 chr6 11898305 11898614 -177380940 + AluSq SINE Alu 1 298 -15 201 288 0 30 chr6 11898614 11898667 -177380887 + (CATA)n Simple_repeat Simple_repeat 15 67 0 24 103 0 0 chr6 11899724 11899811 -177379743 + GC_rich Low_complexity Low_complexity 1 87 0 2253 91 10 0 chr6 11901336 11901645 -177377909 + AluSx SINE Alu 1 312 0 911 276 131 8 chr6 11901693 11902051 -177377503 - L2 LINE L2 -2 3311 2910 550 220 15 23 chr6 11902069 11902201 -177377353 + MER5B DNA MER1_type 1 131 -47 2020 117 24 0 chr6 11902241 11902532 -177377022 + AluSx SINE Alu 1 298 -14 1455 147 13 0 chr6 11902702 11902927 -177376627 - AluJb SINE Alu -79 233 6 217 321 71 65 chr6 11902927 11902992 -177376562 + MER5B DNA MER1_type 4 67 -111 2007 120 0 10 chr6 11902992 11903292 -177376262 + AluSx SINE Alu 1 297 -15 217 321 71 65 chr6 11903292 11903394 -177376160 + MER5B DNA MER1_type 67 172 -6 249 83 0 0 chr6 11903471 11903507 -177376047 + (TA)n Simple_repeat Simple_repeat 2 37 0 2080 159 14 44 chr6 11903514 11903720 -177375834 - MLT1A1 LTR MaLR -12 353 161 1845 157 3 6 chr6 11903720 11904032 -177375522 - AluJb SINE Alu -1 311 1 2080 159 14 44 chr6 11904032 11904189 -177375365 - MLT1A1 LTR MaLR -204 161 1 2604 48 0 0 chr6 11904336 11904647 -177374907 + AluY SINE Alu 1 311 0 3660 162 15 126 chr6 11905375 11906903 -177372651 - pTR5 LTR ERV1 0 2606 1524 424 269 100 19 chr6 11906903 11907063 -177372491 - MER112 DNA MER1_type -22 238 66 2135 107 0 3 chr6 11907196 11907494 -177372060 - AluSx SINE Alu -14 298 2 372 301 132 36 chr6 11907812 11907926 -177371628 + MIR SINE MIR 11 113 -149 2500 140 0 65 chr6 11907926 11908140 -177371414 + Tigger2a DNA MER2_type 1 170 -2538 2184 106 0 6 chr6 11908140 11908451 -177371103 - AluSg SINE Alu 0 310 2 2500 140 0 65 chr6 11908451 11908700 -177370854 + Tigger2a DNA MER2_type 170 434 0 372 301 132 36 chr6 11908700 11908804 -177370750 + MIR SINE MIR 113 250 -12 2001 119 14 3 chr6 11908834 11909127 -177370427 - AluSx SINE Alu -16 296 1 1059 316 17 44 chr6 11909193 11909598 -177369956 - MLT2F LTR ERVL -7 656 263 1826 183 83 39 chr6 11909598 11910029 -177369525 - MLT1C LTR MaLR 0 467 18 607 276 124 18 chr6 11910067 11910292 -177369262 - MLT2F LTR ERVL -414 249 1 2072 102 10 3 chr6 11910559 11910853 -177368701 + AluSq SINE Alu 1 296 -17 296 184 197 7 chr6 11911356 11911503 -177368051 - Charlie7 DNA MER1_type -41 2571 2397 658 118 0 36 chr6 11911566 11911676 -177367878 - MLT2D LTR ERVL -308 106 1 555 264 171 10 chr6 11912064 11912210 -177367344 + MER5C DNA MER1_type 1 187 -137 225 65 0 0 chr6 11912210 11912241 -177367313 + (CAT)n Simple_repeat Simple_repeat 2 32 0 555 264 171 10 chr6 11912241 11912287 -177367267 + MER5C DNA MER1_type 187 224 -100 804 295 28 8 chr6 11912556 11912810 -177366744 + MER46C DNA MER2_type 80 338 0 2278 95 0 0 chr6 11915504 11915808 -177363746 - AluSc SINE Alu -5 304 1 1820 151 0 22 chr6 11916382 11916694 -177362860 - AluJo SINE Alu -7 305 1 466 323 44 40 chr6 11917213 11917464 -177362090 + MIR SINE MIR 2 253 -9 973 212 102 29 chr6 11917789 11918063 -177361491 - MER58B DNA MER1_type -3 338 45 222 327 140 0 chr6 11918229 11918379 -177361175 - L2 LINE L2 0 3272 3102 318 281 39 98 chr6 11918848 11919051 -177360503 + MIR3 SINE MIR 3 193 -15 1543 263 60 21 chr6 11919639 11920170 -177359384 + L2 LINE L2 2718 3287 -26 274 224 22 30 chr6 11920276 11920410 -177359144 + (TAA)n Simple_repeat Simple_repeat 1 133 0 290 279 150 7 chr6 11920410 11920550 -177359004 - MIR SINE MIR 0 262 103 2112 111 16 3 chr6 11920560 11920866 -177358688 + AluSq SINE Alu 1 310 -3 209 267 0 0 chr6 11922385 11922430 -177357124 + GA-rich Low_complexity Low_complexity 6 50 0 789 229 78 0 chr6 11925106 11925272 -177354282 - MIR SINE MIR -73 189 11 228 86 0 0 chr6 11926754 11926789 -177352765 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2125 113 3 0 chr6 11927022 11927323 -177352231 - AluSx SINE Alu -10 302 1 533 261 135 37 chr6 11928030 11928245 -177351309 + MIR SINE MIR 21 256 -6 354 290 183 21 chr6 11928598 11928784 -177350770 + MIR SINE MIR 46 261 -1 22 0 0 0 chr6 11929749 11929771 -177349783 + AT_rich Low_complexity Low_complexity 1 22 0 2294 56 7 0 chr6 11929771 11930088 -177349466 + AluY SINE Alu 1 319 0 192 244 44 0 chr6 11932269 11932314 -177347240 - MIR SINE MIR -107 155 109 967 141 17 108 chr6 11932397 11932638 -177346916 - MER20 DNA MER1_type 0 219 1 239 189 151 0 chr6 11934025 11934078 -177345476 + MIR3 SINE MIR 134 194 -14 2166 112 3 3 chr6 11934159 11934471 -177345083 - AluSx SINE Alu 0 312 1 229 342 79 26 chr6 11936927 11937041 -177342513 - L2 LINE L2 0 3272 3153 259 305 140 50 chr6 11937403 11937724 -177341830 - L2 LINE L2 -1005 2309 1960 538 292 37 6 chr6 11937841 11938002 -177341552 + MIR3 SINE MIR 31 196 -12 196 253 13 67 chr6 11938841 11938916 -177340638 - MIR SINE MIR -73 135 77 330 196 152 54 chr6 11939083 11939195 -177340359 + MIR3 SINE MIR 54 176 -32 236 293 207 12 chr6 11943036 11943200 -177336354 - L2 LINE L2 0 3313 3118 356 160 27 0 chr6 11944779 11944854 -177334700 + CT-rich Low_complexity Low_complexity 4 80 0 422 292 16 52 chr6 11945249 11945441 -177334113 - MER5A DNA MER1_type -4 185 1 551 256 87 19 chr6 11945784 11945996 -177333558 + MIR SINE MIR 17 244 -18 259 258 0 15 chr6 11946261 11946327 -177333227 - ORSL DNA AcHobo 0 275 211 2062 137 0 0 chr6 11947377 11947676 -177331878 - AluSx SINE Alu -13 299 1 254 356 35 0 chr6 11947704 11947819 -177331735 + L2 LINE L2 2933 3051 -221 255 152 0 0 chr6 11948188 11948234 -177331320 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr6 11949086 11949108 -177330446 + AT_rich Low_complexity Low_complexity 1 22 0 2444 91 0 0 chr6 11949137 11949435 -177330119 - AluSq SINE Alu -15 298 1 2043 148 0 3 chr6 11949644 11949942 -177329612 + AluSq SINE Alu 1 297 -16 248 277 23 59 chr6 11950300 11950459 -177329095 - MIR SINE MIR -72 136 34 2361 113 0 0 chr6 11950822 11951132 -177328422 - AluSg SINE Alu 0 310 1 200 289 79 0 chr6 11951438 11951514 -177328040 + MIR3 SINE MIR 119 200 -8 1373 124 14 5 chr6 11951559 11951769 -177327785 + MLT2D LTR ERVL 106 317 -97 216 216 0 0 chr6 11951816 11951867 -177327687 + (CA)n Simple_repeat Simple_repeat 2 52 0 621 331 57 38 chr6 11952125 11952545 -177327009 + MLT1K LTR MaLR 157 584 -4 206 275 58 58 chr6 11952546 11952666 -177326888 + L2 LINE L2 3185 3304 -9 1039 163 9 14 chr6 11954989 11955204 -177324350 - L1MB7 LINE L1 -16 6168 5955 186 133 0 0 chr6 11955776 11955806 -177323748 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1059 201 5 0 chr6 11956589 11956783 -177322771 + MLT2D LTR ERVL 3 197 -217 1299 230 193 26 chr6 11956800 11957230 -177322324 - MLT1J LTR MaLR -9 502 1 23 0 0 0 chr6 11960394 11960417 -177319137 + AT_rich Low_complexity Low_complexity 1 23 0 710 133 11 116 chr6 11961542 11961673 -177317881 - MER53 DNA DNA -7 182 74 2152 123 27 0 chr6 11961673 11961966 -177317588 - AluSg SINE Alu -9 301 1 710 133 11 116 chr6 11961966 11962015 -177317539 - MER53 DNA DNA -115 74 21 786 120 8 0 chr6 11962041 11962158 -177317396 - L1PB1 LINE L1 -3 6148 6031 383 338 35 65 chr6 11963077 11963474 -177316080 - L2 LINE L2 -337 2977 2593 1692 127 113 11 chr6 11964044 11964319 -177315235 - AluJb SINE Alu -9 303 1 1229 199 0 0 chr6 11964707 11964918 -177314636 - MER20 DNA MER1_type 0 219 9 324 0 0 0 chr6 11965331 11965367 -177314187 + (TG)n Simple_repeat Simple_repeat 1 36 0 273 29 0 0 chr6 11967491 11967525 -177312029 + (CA)n Simple_repeat Simple_repeat 2 35 0 501 296 50 10 chr6 11967875 11968074 -177311480 + MIR SINE MIR 2 208 -54 306 169 0 0 chr6 11968412 11968477 -177311077 + (TG)n Simple_repeat Simple_repeat 2 66 0 214 290 86 74 chr6 11968774 11968936 -177310618 - MIR SINE MIR -50 212 49 430 307 16 0 chr6 11971484 11971611 -177307943 + MIR SINE MIR 41 169 -93 1625 224 88 100 chr6 11971944 11972421 -177307133 + HAL1b LINE L1 443 905 -443 829 158 0 8 chr6 11972421 11972554 -177307000 - FLAM_C SINE Alu -1 132 1 1625 224 88 100 chr6 11972554 11972963 -177306591 + HAL1b LINE L1 905 1318 -30 2535 173 10 10 chr6 11973272 11973751 -177305803 + L1PB4 LINE L1 5677 6155 -1 885 149 28 145 chr6 11973768 11974016 -177305538 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr6 11974153 11974175 -177305379 + AT_rich Low_complexity Low_complexity 1 22 0 1782 149 10 14 chr6 11975590 11975886 -177303668 - AluJb SINE Alu -17 295 1 2330 79 0 0 chr6 11976001 11976281 -177303273 + AluSq SINE Alu 1 280 -33 381 22 0 0 chr6 11976281 11976327 -177303227 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr6 11977367 11977396 -177302158 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2019 127 13 7 chr6 11977401 11977700 -177301854 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 11977923 11977945 -177301609 + AT_rich Low_complexity Low_complexity 1 22 0 234 278 106 40 chr6 11978334 11978485 -177301069 - L2 LINE L2 -143 3129 2969 1590 176 17 27 chr6 11978591 11978892 -177300662 - AluJo SINE Alu -14 298 1 4214 150 24 65 chr6 11982200 11983092 -177296462 + L1MA8 LINE L1 5431 6285 -6 228 182 0 0 chr6 11983092 11983136 -177296418 + (CATA)n Simple_repeat Simple_repeat 3 46 0 381 216 0 0 chr6 11983887 11983975 -177295579 + (TG)n Simple_repeat Simple_repeat 1 88 0 211 209 0 0 chr6 11983998 11984041 -177295513 + L2 LINE L2 3179 3221 -92 252 0 0 0 chr6 11984498 11984526 -177295028 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 330 344 53 21 chr6 11985448 11985637 -177293917 + LTR33 LTR ERVL 23 217 -304 338 303 298 0 chr6 11985855 11986033 -177293521 - MIR SINE MIR -19 243 13 333 233 126 0 chr6 11986231 11986334 -177293220 + MER5B DNA MER1_type 1 116 -62 966 209 24 0 chr6 11987555 11987766 -177291788 - MER20 DNA MER1_type 0 219 4 401 283 178 12 chr6 11988048 11988295 -177291259 + LTR33 LTR ERVL 5 292 -229 852 271 142 57 chr6 11988711 11989076 -177290478 + MLT1L LTR MaLR 1 334 -281 922 128 0 0 chr6 11989076 11989209 -177290345 - FLAM_C SINE Alu 0 133 1 852 271 142 57 chr6 11989209 11989293 -177290261 + MLT1L LTR MaLR 334 409 -206 1755 153 50 17 chr6 11989293 11989594 -177289960 - AluSx SINE Alu -1 311 1 852 271 142 57 chr6 11989594 11989686 -177289868 + MLT1L LTR MaLR 409 589 -26 1482 308 136 12 chr6 11989792 11990951 -177288603 + L2 LINE L2 1978 3282 -31 201 39 0 0 chr6 11990969 11990995 -177288559 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 211 235 0 44 chr6 11991092 11991160 -177288394 + L2 LINE L2 2152 2216 -1098 2280 80 0 52 chr6 11991823 11992149 -177287405 + AluY SINE Alu 1 309 -2 38 0 0 0 chr6 11992332 11992370 -177287184 + AT_rich Low_complexity Low_complexity 1 38 0 655 272 58 5 chr6 11992393 11992617 -177286937 - MIR SINE MIR -4 258 23 3765 211 43 35 chr6 11992854 11994514 -177285040 + L1ME1 LINE L1 4448 6121 -45 339 164 15 0 chr6 11994625 11994692 -177284862 + L1MA10 LINE L1 6266 6333 -1 1916 145 0 3 chr6 11994700 11995002 -177284552 + AluSx SINE Alu 1 301 0 234 0 0 0 chr6 11995080 11995106 -177284448 + (CA)n Simple_repeat Simple_repeat 1 26 0 2209 92 4 0 chr6 11996996 11997306 -177282248 - AluY SINE Alu 0 311 1 335 321 9 0 chr6 11998422 11998528 -177281026 + MLT1J1 LTR MaLR 66 172 -274 2658 49 0 0 chr6 11998823 11999129 -177280425 - AluY SINE Alu -5 306 1 439 269 39 51 chr6 12000461 12000617 -177278937 + MER5A DNA MER1_type 35 188 -1 431 310 105 35 chr6 12000689 12000918 -177278636 - MIR SINE MIR -6 256 12 5658 149 29 30 chr6 12001031 12001555 -177277999 - L1MA9 LINE L1 -6 6306 5783 309 89 0 0 chr6 12001555 12001600 -177277954 + (TG)n Simple_repeat Simple_repeat 2 46 0 5658 149 29 30 chr6 12001600 12001834 -177277720 - L1MA9 LINE L1 -529 5783 5550 2315 133 117 5 chr6 12001834 12002219 -177277335 + MSTA LTR MaLR 1 428 0 5658 149 29 30 chr6 12002219 12002360 -177277194 - L1MA9 LINE L1 -762 5550 5410 2734 101 0 3 chr6 12002360 12002725 -177276829 + THE1B LTR MaLR 1 364 0 5658 149 29 30 chr6 12002725 12002929 -177276625 - L1MA9 LINE L1 -902 5410 5203 790 272 81 0 chr6 12003130 12003402 -177276152 + LTR16A LTR ERVL 152 445 -5 2372 121 32 8 chr6 12003455 12003828 -177275726 + MLT1B LTR MaLR 1 382 -8 683 35 0 61 chr6 12004162 12004277 -177275277 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 2224 130 0 0 chr6 12004277 12004584 -177274970 - AluSx SINE Alu -5 307 1 212 171 0 0 chr6 12004679 12004720 -177274834 + T-rich Low_complexity Low_complexity 1 41 0 830 213 60 47 chr6 12005246 12005452 -177274102 - MIR SINE MIR -18 244 33 2165 142 0 0 chr6 12005452 12005763 -177273791 - AluSx SINE Alu -1 311 1 830 213 60 47 chr6 12005763 12005791 -177273763 - MIR SINE MIR -229 33 7 198 118 0 0 chr6 12005837 12005871 -177273683 + (TG)n Simple_repeat Simple_repeat 1 34 0 7400 91 17 10 chr6 12006427 12012519 -177267035 + L1PA6 LINE L1 11 6149 -5 262 350 105 8 chr6 12012789 12012951 -177266603 - MIR SINE MIR -55 207 32 265 307 114 9 chr6 12015268 12015382 -177264172 - L1ME2 LINE L1 -48 6116 5991 1602 300 96 21 chr6 12015397 12015917 -177263637 + MER115 DNA AcHobo 3 579 -114 2684 49 0 0 chr6 12015917 12016224 -177263330 - AluY SINE Alu -4 307 1 1602 300 96 21 chr6 12016224 12016330 -177263224 + MER115 DNA AcHobo 579 676 -17 939 264 24 10 chr6 12016657 12016945 -177262609 - L1ME2 LINE L1 -202 5968 5677 402 203 136 0 chr6 12017009 12017123 -177262431 - FLAM_A SINE Alu -26 107 3 370 270 112 4 chr6 12017124 12017263 -177262291 - L1ME2 LINE L1 -577 5585 5434 442 350 28 9 chr6 12017843 12018166 -177261388 + L2 LINE L2 980 1308 -2006 220 374 14 43 chr6 12018314 12018592 -177260962 + L2 LINE L2 1332 1601 -1713 1307 183 109 29 chr6 12018716 12019066 -177260488 + MLT1B LTR MaLR 7 384 -6 358 325 12 25 chr6 12019077 12019237 -177260317 + MIR SINE MIR 70 227 -35 364 106 0 0 chr6 12019237 12019281 -177260273 - MLT1B LTR MaLR 0 390 347 331 93 0 0 chr6 12019281 12019324 -177260230 + Alu SINE Alu 1 43 -260 247 368 110 16 chr6 12019981 12020163 -177259391 + L2 LINE L2 2550 2748 -566 414 198 267 32 chr6 12020171 12020234 -177259320 + L1MC5 LINE L1 7629 7676 -285 217 0 61 0 chr6 12020234 12020267 -177259287 + (TA)n Simple_repeat Simple_repeat 2 36 0 414 198 267 32 chr6 12020267 12020420 -177259134 + L1MC5 LINE L1 7676 7896 -65 225 350 10 20 chr6 12020476 12020576 -177258978 + L2 LINE L2 2736 2834 -480 765 171 17 0 chr6 12020652 12020827 -177258727 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 905 164 6 9 chr6 12020839 12021181 -177258373 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 295 331 93 0 chr6 12021181 12021332 -177258222 + MIR3 SINE MIR 7 171 -37 21 82 0 0 chr6 12021377 12021426 -177258128 + AT_rich Low_complexity Low_complexity 1 49 0 187 289 0 0 chr6 12021433 12021485 -177258069 + L3 LINE CR1 1524 1575 -2 22 0 0 0 chr6 12021554 12021576 -177257978 + AT_rich Low_complexity Low_complexity 1 22 0 234 200 18 55 chr6 12021816 12021871 -177257683 + L2 LINE L2 3214 3266 -6 289 295 164 16 chr6 12022300 12022422 -177257132 + MIR3 SINE MIR 16 155 -53 309 347 68 37 chr6 12024205 12024663 -177254891 - L2 LINE L2 -647 2667 2196 2046 103 59 7 chr6 12024706 12024996 -177254558 + AluSx SINE Alu 1 305 -7 302 282 149 11 chr6 12025106 12025280 -177254274 - L2 LINE L2 -1371 1943 1746 1755 229 31 74 chr6 12025331 12025873 -177253681 + MLT2B1 LTR ERVL 2 520 0 232 296 0 0 chr6 12025883 12025937 -177253617 + polypurine Low_complexity Low_complexity 1 54 0 482 233 2 15 chr6 12026883 12027339 -177252215 + (CA)n Simple_repeat Simple_repeat 1 450 0 183 229 0 0 chr6 12027387 12027448 -177252106 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr6 12027791 12027812 -177251742 + AT_rich Low_complexity Low_complexity 1 21 0 562 294 51 29 chr6 12028031 12028455 -177251099 + L1ME4a LINE L1 5575 6008 -113 692 190 10 0 chr6 12028602 12028800 -177250754 + GA-rich Low_complexity Low_complexity 1 200 0 3210 79 17 0 chr6 12029484 12029904 -177249650 + L1PA8 LINE L1 5745 6171 -1 283 303 38 30 chr6 12030296 12030428 -177249126 + MER5A DNA MER1_type 57 189 0 243 226 165 0 chr6 12030443 12030510 -177249044 + MIR SINE MIR 31 106 -102 958 217 33 19 chr6 12031016 12031228 -177248326 + MER20 DNA MER1_type 5 219 0 4556 179 58 48 chr6 12032012 12032629 -177246925 + MER45B DNA AcHobo 1 633 -948 2325 100 3 0 chr6 12032629 12032928 -177246626 + AluSx SINE Alu 1 300 -12 4556 179 58 48 chr6 12032928 12033313 -177246241 + MER45B DNA AcHobo 633 1013 -27 2250 115 0 6 chr6 12033418 12033730 -177245824 + AluSx SINE Alu 1 310 -2 356 320 0 0 chr6 12034561 12034664 -177244890 + MER94 DNA DNA 1 103 -31 215 270 108 0 chr6 12034716 12034790 -177244764 + MIR3 SINE MIR 96 177 -31 1063 158 0 50 chr6 12037258 12037460 -177242094 + MER20 DNA MER1_type 28 219 0 836 257 5 10 chr6 12037513 12037719 -177241835 + MER3 DNA MER1_type 3 207 -2 449 108 0 14 chr6 12040583 12040657 -177238897 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 257 203 70 112 chr6 12041740 12041927 -177237627 + L1ME4a LINE L1 5943 6121 0 9548 100 9 2 chr6 12042126 12043403 -177236151 + HSMAR1 DNA Mariner 1 1287 0 3302 143 22 13 chr6 12043790 12044341 -177235213 - Tigger3b DNA MER2_type -1 1230 675 2831 179 44 19 chr6 12044328 12044494 -177235060 - Tigger3b DNA MER2_type -2472 556 396 * 2232 113 3 0 chr6 12044494 12044795 -177234759 + AluSg SINE Alu 1 302 -8 2831 179 44 19 chr6 12044795 12045170 -177234384 - Tigger3b DNA MER2_type -2632 396 1 204 278 89 33 chr6 12045190 12045280 -177234274 + L2 LINE L2 3203 3297 -16 2596 150 37 22 chr6 12045580 12046039 -177233515 + MLT1C LTR MaLR 1 466 -1 2449 91 0 0 chr6 12046197 12046494 -177233060 + AluSc SINE Alu 1 297 -12 230 108 27 0 chr6 12046810 12046847 -177232707 - L1P4 LINE L1 -330 5833 5796 435 274 65 20 chr6 12047996 12048149 -177231405 - MIR SINE MIR -30 232 73 729 280 100 12 chr6 12048282 12048621 -177230933 + L2 LINE L2 2608 2976 -338 348 284 50 55 chr6 12048667 12048885 -177230669 + L1MEc LINE L1 204 420 -6143 761 197 28 0 chr6 12049136 12049278 -177230276 - MER3 DNA MER1_type -63 146 1 1711 283 73 41 chr6 12049280 12050326 -177229228 + L1MEc LINE L1 755 1833 -4551 867 262 110 14 chr6 12050295 12050658 -177228896 + L1ME2 LINE L1 5989 6386 -14 * 2236 108 0 3 chr6 12050703 12050998 -177228556 + AluSg SINE Alu 1 294 -16 591 236 187 9 chr6 12051000 12051225 -177228329 + L2 LINE L2 3030 3294 -19 234 105 0 0 chr6 12051229 12051267 -177228287 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 604 256 137 26 chr6 12053548 12053782 -177225772 + L2 LINE L2 3053 3312 -1 282 224 45 0 chr6 12054772 12054839 -177224715 + MIR SINE MIR 84 153 -109 10182 155 9 1 chr6 12054848 12057491 -177222063 + L1PA13 LINE L1 3501 6159 -4 247 288 81 9 chr6 12058138 12058249 -177221305 - L3 LINE CR1 -1 1576 1458 241 192 154 58 chr6 12058232 12058336 -177221218 - L2 LINE L2 -21 3251 3138 * 507 179 97 28 chr6 12058479 12058624 -177220930 - L1MA9 LINE L1 -9 6303 6149 836 262 73 66 chr6 12058984 12059462 -177220092 + MER39 LTR ERV1 67 707 0 356 309 78 11 chr6 12060109 12060300 -177219254 + MIR SINE MIR 2 205 -57 246 253 178 27 chr6 12060391 12060537 -177219017 + MIR SINE MIR 84 251 -11 1585 215 54 39 chr6 12060742 12061202 -177218352 + MLT1C LTR MaLR 1 467 0 675 303 131 25 chr6 12062161 12062481 -177217073 + MLT1K LTR MaLR 3 356 -232 231 154 0 0 chr6 12062584 12062623 -177216931 + MLT1K LTR MaLR 550 588 0 24 0 0 0 chr6 12062899 12062923 -177216631 + AT_rich Low_complexity Low_complexity 1 24 0 450 266 9 0 chr6 12063033 12063142 -177216412 - MER81 DNA DNA 0 114 5 2501 52 0 10 chr6 12063271 12063576 -177215978 - AluY SINE Alu -9 302 1 318 273 56 35 chr6 12063802 12063945 -177215609 - MER5B DNA MER1_type 0 178 33 580 168 104 0 chr6 12064065 12064190 -177215364 - MER5A DNA MER1_type -7 182 45 2422 53 16 10 chr6 12065525 12065829 -177213725 + AluSc SINE Alu 1 306 -3 2530 110 78 8 chr6 12067966 12068366 -177211188 + MSTA LTR MaLR 1 428 0 2008 126 126 48 chr6 12068816 12069213 -177210341 - MSTA LTR MaLR 0 428 1 1443 213 62 15 chr6 12069568 12069906 -177209648 + MLT1A1 LTR MaLR 1 354 -11 217 268 37 24 chr6 12071406 12071488 -177208066 - MIR SINE MIR -21 241 159 2904 161 72 0 chr6 12071491 12072007 -177207547 + MER68 LTR ERV1 4 556 -6 649 245 7 0 chr6 12072020 12072167 -177207387 - MIR SINE MIR -103 159 12 2056 119 7 10 chr6 12073263 12073557 -177205997 + AluSx SINE Alu 1 293 -19 1832 126 53 0 chr6 12073559 12073821 -177205733 + AluSg SINE Alu 1 276 -34 824 141 23 6 chr6 12073842 12074019 -177205535 + GA-rich Low_complexity Low_complexity 1 180 0 268 325 25 67 chr6 12074293 12074455 -177205099 + MIR SINE MIR 37 191 -61 609 221 62 112 chr6 12076422 12076680 -177202874 - MIR SINE MIR -5 257 13 253 278 56 16 chr6 12077320 12077446 -177202108 - L1MC/D LINE L1 -1954 5854 5724 251 318 106 18 chr6 12078260 12078647 -177200907 - L2 LINE L2 0 3313 2884 2612 177 13 0 chr6 12078656 12079124 -177200430 - L1MC1 LINE L1 -1 6332 5859 6599 92 11 19 chr6 12079407 12080363 -177199191 - L1MA2 LINE L1 -11 6293 5345 21 0 0 0 chr6 12080700 12080721 -177198833 + AT_rich Low_complexity Low_complexity 1 21 0 408 193 0 105 chr6 12081094 12081208 -177198346 + L2 LINE L2 3196 3297 -16 2066 166 26 45 chr6 12081247 12081600 -177197954 + MLT2D LTR ERVL 1 346 -68 207 0 0 0 chr6 12081600 12081623 -177197931 + (TC)n Simple_repeat Simple_repeat 2 24 0 2066 166 26 45 chr6 12081623 12081691 -177197863 + MLT2D LTR ERVL 346 414 0 1059 145 0 6 chr6 12132272 12132431 -177147123 - MSTA LTR MaLR -269 159 2 3341 261 36 24 chr6 12132431 12134632 -177144922 - L1MEc LINE L1 -2957 3258 991 1078 286 23 9 chr6 12134678 12135021 -177144533 - L1MEc LINE L1 -6013 383 36 420 238 90 8 chr6 12135106 12135228 -177144326 + L1MEd LINE L1 988 1119 -5000 435 333 32 9 chr6 12135279 12135562 -177143992 - L1MEc LINE L1 -4539 2001 1708 554 255 21 35 chr6 12135698 12135831 -177143723 + MER45 DNA AcHobo 1 109 -69 310 91 0 0 chr6 12135831 12135875 -177143679 - L1MB2 LINE L1 -2 6169 6126 2232 168 25 27 chr6 12135876 12136282 -177143272 - MSTB1 LTR MaLR -12 420 16 1827 155 36 3 chr6 12136300 12136635 -177142919 - L1MB2 LINE L1 -51 6120 5775 309 234 16 0 chr6 12136657 12136721 -177142833 + MER45 DNA AcHobo 1517 1581 0 1883 178 18 0 chr6 12137472 12137810 -177141744 + MER2 DNA MER2_type 1 344 0 327 177 247 19 chr6 12138316 12138474 -177141080 + Charlie5 DNA MER1_type 2371 2564 -48 326 138 43 128 chr6 12138566 12138660 -177140894 + Charlie5 DNA MER1_type 2500 2585 -27 1677 133 72 17 chr6 12138937 12139230 -177140324 - AluSq SINE Alu -4 309 1 27237 77 10 7 chr6 12139634 12145771 -177133783 + L1PA6 LINE L1 11 6149 -5 499 325 52 33 chr6 12146895 12147107 -177132447 + LTR16C LTR ERVL 66 281 -210 405 0 0 0 chr6 12147189 12147234 -177132320 + (ATG)n Simple_repeat Simple_repeat 2 46 0 887 186 124 10 chr6 12147250 12147443 -177132111 + LTR16C LTR ERVL 275 489 -2 644 184 9 25 chr6 12147450 12147771 -177131783 + (TCTA)n Simple_repeat Simple_repeat 1 315 0 608 291 23 17 chr6 12148340 12148515 -177131039 + MIR SINE MIR 36 211 -51 186 43 0 0 chr6 12148621 12148644 -177130910 + (CA)n Simple_repeat Simple_repeat 2 24 0 2363 77 7 3 chr6 12149944 12150242 -177129312 + AluY SINE Alu 1 299 -12 3130 137 17 2 chr6 12150862 12151337 -177128217 - L1MB2 LINE L1 -1 6170 5689 417 285 69 21 chr6 12151729 12151873 -177127681 - MIR SINE MIR -106 156 6 4208 38 16 14 chr6 12151950 12152448 -177127106 + L1PA3 LINE L1 5654 6152 -3 499 233 144 11 chr6 12152515 12152695 -177126859 + MIR SINE MIR 53 256 -6 2235 115 3 0 chr6 12152751 12153055 -177126499 + AluSc SINE Alu 1 305 -4 2271 89 0 7 chr6 12153737 12154029 -177125525 - AluSc SINE Alu -19 290 1 2223 109 0 13 chr6 12154657 12154969 -177124585 - AluSc SINE Alu -1 308 1 235 268 7 43 chr6 12155751 12155889 -177123665 + CT-rich Low_complexity Low_complexity 2 134 0 2134 123 7 7 chr6 12156311 12156621 -177122933 + AluSq SINE Alu 1 310 -3 908 189 18 0 chr6 12156755 12156924 -177122630 - MER5A DNA MER1_type 0 189 18 2335 177 33 17 chr6 12157016 12157435 -177122119 + MSTB LTR MaLR 1 426 0 22 56 0 0 chr6 12157438 12157474 -177122080 + AT_rich Low_complexity Low_complexity 1 36 0 2158 128 3 3 chr6 12158108 12158414 -177121140 - AluSq SINE Alu -7 306 1 2331 93 10 0 chr6 12158588 12158890 -177120664 - AluSg SINE Alu 0 310 6 1127 143 20 25 chr6 12160555 12160758 -177118796 + L1M3 LINE L1 5458 5659 -512 263 143 0 0 chr6 12160767 12160802 -177118752 + Alu SINE Alu 10 44 -257 322 228 97 69 chr6 12161758 12161903 -177117651 + MIR SINE MIR 56 204 -58 2481 301 120 28 chr6 12163737 12165281 -177114273 - L2 LINE L2 0 3313 1617 21 0 0 0 chr6 12165685 12165706 -177113848 + AT_rich Low_complexity Low_complexity 1 21 0 5684 100 23 0 chr6 12165942 12166734 -177112820 + L1PA14 LINE L1 5352 6161 0 249 283 172 0 chr6 12167096 12167195 -177112359 + MIR3 SINE MIR 87 202 -6 207 0 0 0 chr6 12167518 12167541 -177112013 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 641 278 58 11 chr6 12168031 12168302 -177111252 - MLT1G1 LTR MaLR 0 590 199 321 247 22 11 chr6 12168317 12168406 -177111148 + GA-rich Low_complexity Low_complexity 1 90 0 779 270 13 30 chr6 12168406 12168643 -177110911 - MLT1G1 LTR MaLR -360 235 3 1438 217 35 98 chr6 12169167 12169262 -177110292 + MLT1C LTR MaLR 2 101 -366 2203 110 0 19 chr6 12169262 12169570 -177109984 + AluSq SINE Alu 3 304 -9 1438 217 35 98 chr6 12169570 12169902 -177109652 + MLT1C LTR MaLR 101 397 -70 2056 101 14 3 chr6 12169902 12170189 -177109365 - AluSq SINE Alu -22 291 2 1438 217 35 98 chr6 12170189 12170249 -177109305 + MLT1C LTR MaLR 397 459 -8 852 313 58 24 chr6 12171083 12171499 -177108055 + LTR16B LTR ERVL 22 451 -13 580 271 69 32 chr6 12171502 12171690 -177107864 + MIR SINE MIR 51 245 -17 2279 92 3 0 chr6 12171978 12172272 -177107282 + AluSp SINE Alu 1 295 -18 337 330 87 6 chr6 12172371 12172544 -177107010 - L3 LINE CR1 -337 1240 1054 1878 174 80 3 chr6 12174382 12174733 -177104821 - MLT1B LTR MaLR -10 380 3 740 133 6 139 chr6 12174926 12175091 -177104463 + FRAM SINE Alu 1 142 -34 222 37 0 0 chr6 12175091 12175118 -177104436 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2271 100 10 0 chr6 12175846 12176147 -177103407 + AluSp SINE Alu 1 304 -9 252 0 0 0 chr6 12177264 12177292 -177102262 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 657 221 0 0 chr6 12177292 12177423 -177102131 - MER3 DNA MER1_type -78 131 1 1144 292 90 26 chr6 12177802 12178258 -177101296 - LTR16C LTR ERVL -4 487 3 2270 94 14 0 chr6 12179884 12180181 -177099373 - AluSx SINE Alu -11 301 1 1282 271 76 48 chr6 12182978 12183557 -177095997 - MLT1G1 LTR MaLR 0 595 1 268 171 0 0 chr6 12183663 12183704 -177095850 + LTR37B LTR ERV1 52 92 -376 925 217 5 51 chr6 12183728 12183945 -177095609 - MER20 DNA MER1_type -6 213 7 472 185 146 92 chr6 12183964 12184224 -177095330 + LTR37B LTR ERV1 137 410 -58 276 77 0 0 chr6 12184227 12184266 -177095288 + (CA)n Simple_repeat Simple_repeat 1 39 0 794 311 20 17 chr6 12184358 12184654 -177094900 + LTR16B LTR ERVL 37 333 -131 1938 319 52 15 chr6 12184657 12184733 -177094821 - HERV16 LTR ERVL -1907 3089 3017 2375 61 0 10 chr6 12184733 12185030 -177094524 - AluY SINE Alu -17 294 1 1938 319 52 15 chr6 12185030 12186481 -177093073 - HERV16 LTR ERVL -1979 3017 1453 423 246 82 8 chr6 12186511 12186633 -177092921 - HERV16 LTR ERVL -3758 1238 1108 517 283 14 0 chr6 12186636 12186781 -177092773 - LTR16B LTR ERVL -317 147 1 373 299 136 16 chr6 12186905 12187089 -177092465 - MIR SINE MIR -10 252 47 6035 245 57 58 chr6 12187106 12187872 -177091682 - L1MEc LINE L1 -1648 5293 4527 2313 105 0 0 chr6 12187872 12188167 -177091387 + AluSx SINE Alu 1 295 -17 6035 245 57 58 chr6 12188167 12188985 -177090569 - L1MEc LINE L1 -2414 4527 3709 2206 95 3 33 chr6 12188985 12189290 -177090264 - AluSx SINE Alu -16 296 1 6035 245 57 58 chr6 12189290 12189917 -177089637 - L1MEc LINE L1 -3232 3709 3082 885 226 0 0 chr6 12189917 12190081 -177089473 - U1 snRNA snRNA -1 164 1 6035 245 57 58 chr6 12190081 12190314 -177089240 - L1MEc LINE L1 -3859 3082 2850 2384 74 3 23 chr6 12190314 12190624 -177088930 + AluY SINE Alu 1 304 -7 6035 245 57 58 chr6 12190624 12191423 -177088131 - L1MEc LINE L1 -4091 2850 1980 341 249 97 54 chr6 12191403 12191588 -177087966 - L1MEc LINE L1 -6149 274 82 * 6445 102 17 1 chr6 12191620 12193442 -177086112 + L1PA15 LINE L1 4330 6165 0 478 207 27 164 chr6 12193460 12193759 -177085795 - L1MC4a LINE L1 -1210 6598 6359 231 231 90 0 chr6 12193756 12193834 -177085720 - L1ME2 LINE L1 -1 6163 6079 * 22 106 0 0 chr6 12193818 12193903 -177085651 + AT_rich Low_complexity Low_complexity 1 85 0 * 269 336 67 8 chr6 12194023 12194142 -177085412 + L2 LINE L2 3187 3312 -1 235 288 220 0 chr6 12194848 12194966 -177084588 + MIR SINE MIR 48 191 -71 195 69 0 0 chr6 12194974 12195003 -177084551 + (TAA)n Simple_repeat Simple_repeat 1 29 0 671 222 119 11 chr6 12195012 12195197 -177084357 - MIR SINE MIR -11 251 47 200 237 0 0 chr6 12195238 12195276 -177084278 + MIR SINE MIR 195 232 -30 258 367 108 25 chr6 12195301 12195587 -177083967 + L2 LINE L2 2151 2460 -854 811 141 4 150 chr6 12195860 12196087 -177083467 + MER3 DNA MER1_type 16 209 0 317 276 191 0 chr6 12196087 12196192 -177083362 + L2 LINE L2 3148 3272 0 3433 259 74 47 chr6 12196340 12197832 -177081722 + L1ME LINE L1 19 1470 -4610 2313 103 0 3 chr6 12197832 12198142 -177081412 - AluSc SINE Alu 0 309 1 3433 259 74 47 chr6 12198142 12199661 -177079893 + L1ME LINE L1 1470 3131 -2949 2156 132 0 0 chr6 12199661 12199972 -177079582 + AluSx SINE Alu 1 311 -1 3433 259 74 47 chr6 12199972 12200485 -177079069 + L1ME LINE L1 3131 3629 -2451 21 0 0 0 chr6 12203137 12203158 -177076396 + AT_rich Low_complexity Low_complexity 1 21 0 5190 120 6 8 chr6 12203406 12204209 -177075345 + L1PB4 LINE L1 5349 6150 -6 1150 254 191 9 chr6 12204226 12205006 -177074548 + L1ME LINE L1 3885 4880 -1200 311 289 26 58 chr6 12205185 12205341 -177074213 - L1ME4a LINE L1 -5 6116 5966 2189 101 0 3 chr6 12206281 12206567 -177072987 + AluSg SINE Alu 1 285 -25 25 0 0 0 chr6 12206781 12206806 -177072748 + AT_rich Low_complexity Low_complexity 1 25 0 5867 128 8 3 chr6 12206806 12207720 -177071834 - L1PA16 LINE L1 -9 6157 5238 2184 117 3 3 chr6 12207888 12208187 -177071367 - AluSx SINE Alu -13 299 1 182 338 108 43 chr6 12209064 12209295 -177070259 - L2 LINE L2 -210 3062 2817 2035 192 63 18 chr6 12210140 12210582 -177068972 + MLT1C LTR MaLR 6 467 0 320 231 164 0 chr6 12210582 12210686 -177068868 + MIR SINE MIR 128 248 -14 741 172 0 0 chr6 12210687 12210815 -177068739 + FLAM_A SINE Alu 1 128 -5 599 297 107 10 chr6 12211152 12211452 -177068102 + MARNA DNA Mariner 64 392 -194 355 199 72 14 chr6 12212640 12212792 -177066762 + (TA)n Simple_repeat Simple_repeat 1 143 -1706 6393 141 78 18 chr6 12212792 12213060 -177066494 + Tigger3b DNA MER2_type 2 252 -2776 2124 112 7 3 chr6 12213060 12213355 -177066199 + AluSx SINE Alu 1 296 -16 6393 141 78 18 chr6 12213355 12214245 -177065309 + Tigger3b DNA MER2_type 252 1230 -1 355 199 72 14 chr6 12214245 12214387 -177065167 + (TA)n Simple_repeat Simple_repeat 143 1849 0 5400 163 32 8 chr6 12214669 12216049 -177063505 + L1MA3 LINE L1 4611 6038 -267 2249 111 0 0 chr6 12216049 12216347 -177063207 + AluSq SINE Alu 1 298 -15 5400 163 32 8 chr6 12216347 12216622 -177062932 + L1MA3 LINE L1 6038 6305 0 40 27 0 41 chr6 12216623 12216696 -177062858 + AT_rich Low_complexity Low_complexity 1 70 0 2248 139 30 3 chr6 12217169 12217666 -177061888 - LTR24B LTR ERV1 -7 569 1 880 245 129 19 chr6 12217682 12218008 -177061546 - MLT1J1 LTR MaLR -93 357 1 420 274 127 0 chr6 12218133 12218290 -177061264 + MIR SINE MIR 80 256 -6 1562 197 181 29 chr6 12218441 12218888 -177060666 + MLT2B1 LTR ERVL 5 519 -1 21 0 0 0 chr6 12219351 12219372 -177060182 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 12219397 12219425 -177060129 + AT_rich Low_complexity Low_complexity 1 28 0 277 299 84 0 chr6 12219429 12219536 -177060018 - MIR SINE MIR 0 262 147 378 308 0 54 chr6 12219586 12219716 -177059838 - MIR SINE MIR -108 154 32 355 281 104 45 chr6 12220121 12220409 -177059145 + L1M4 LINE L1 2255 2559 -3587 556 167 0 0 chr6 12220705 12220825 -177058729 - MER96B DNA MER1_type? -238 179 60 521 202 28 90 chr6 12220718 12220896 -177058658 + MER96B DNA MER1_type? 250 416 -1 * 2305 68 0 0 chr6 12221002 12221297 -177058257 + THE1-int LTR MaLR 1286 1580 0 1083 110 27 82 chr6 12221311 12221530 -177058024 + THE1B LTR MaLR 157 363 -1 377 98 0 0 chr6 12221532 12221583 -177057971 + THE1B-int LTR MaLR 2 52 -1528 202 337 12 36 chr6 12221865 12221948 -177057606 - L3b LINE CR1 -124 1459 1379 256 151 132 0 chr6 12222287 12222340 -177057214 - L2 LINE L2 -4 3309 3250 252 312 101 9 chr6 12222656 12222765 -177056789 + MIR3 SINE MIR 85 203 -5 312 290 108 89 chr6 12223770 12224646 -177054908 - L1M2 LINE L1 -5442 1407 677 * 349 314 121 54 chr6 12224268 12224657 -177054897 + L1M2 LINE L1 541 955 -5894 14161 114 52 18 chr6 12226261 12228600 -177050954 - Tigger1 DNA MER2_type 0 2418 1 508 285 220 0 chr6 12229239 12229439 -177050115 - MIR SINE MIR -12 250 7 327 256 112 56 chr6 12229554 12229679 -177049875 + L2 LINE L2 3137 3268 -4 310 292 193 12 chr6 12229828 12229989 -177049565 - MIR SINE MIR -10 252 63 262 341 45 11 chr6 12230449 12230537 -177049017 - MIR SINE MIR -99 109 19 1277 146 78 0 chr6 12230595 12230814 -177048740 + MER46A DNA MER2_type 1 236 0 423 0 0 0 chr6 12231687 12231734 -177047820 + (TG)n Simple_repeat Simple_repeat 2 48 0 1573 184 100 10 chr6 12231762 12231847 -177047707 - MER44D DNA MER2_type -1883 608 532 6754 126 66 14 chr6 12231847 12232174 -177047380 + Tigger3b DNA MER2_type 1 310 -2718 2298 59 0 21 chr6 12232174 12232460 -177047094 + AluY SINE Alu 27 306 -5 6754 126 66 14 chr6 12232460 12233303 -177046251 + Tigger3b DNA MER2_type 310 1231 0 1573 184 100 10 chr6 12233303 12233527 -177046027 - MER44D DNA MER2_type -1959 532 1 7157 47 12 1 chr6 12234433 12235511 -177044043 + L1PA5 LINE L1 5066 6154 0 229 286 48 0 chr6 12235596 12235659 -177043895 - MIR SINE MIR -11 251 186 2554 53 0 0 chr6 12235806 12236108 -177043446 + AluY SINE Alu 1 302 -9 809 144 0 0 chr6 12236445 12236563 -177042991 - FLAM_C SINE Alu -25 118 1 2100 108 10 10 chr6 12236600 12236897 -177042657 - AluSx SINE Alu -15 297 1 601 255 13 13 chr6 12237026 12237175 -177042379 - MIR SINE MIR -2 260 112 1320 213 163 42 chr6 12237360 12237839 -177041715 - MLT1F LTR MaLR 0 542 6 216 352 77 0 chr6 12238022 12238113 -177041441 - L2 LINE L2 -17 3255 3158 300 321 66 7 chr6 12238425 12238562 -177040992 + MER5A DNA MER1_type 18 162 -27 21 0 0 0 chr6 12238593 12238614 -177040940 + AT_rich Low_complexity Low_complexity 1 21 0 3305 157 65 25 chr6 12238885 12239521 -177040033 - LTR51 LTR ERV1 0 671 11 966 196 105 24 chr6 12239524 12239733 -177039821 + MER8 DNA MER2_type 14 239 0 254 298 106 11 chr6 12239930 12240024 -177039530 + MIR SINE MIR 37 139 -69 1224 242 27 67 chr6 12241351 12242015 -177037539 - L1MCc LINE L1 -4553 2569 1735 3390 256 94 13 chr6 12242030 12243289 -177036265 - L1MCc LINE L1 -4858 1564 188 25 0 0 0 chr6 12243380 12243405 -177036149 + AT_rich Low_complexity Low_complexity 1 25 0 909 91 0 15 chr6 12243496 12243628 -177035926 + L1PA10 LINE L1 6035 6164 -4 221 288 72 24 chr6 12243808 12243933 -177035621 + L2 LINE L2 2411 2541 -773 1138 131 0 29 chr6 12244021 12244196 -177035358 - AluJo SINE Alu -22 290 121 756 184 0 84 chr6 12244527 12244706 -177034848 + MER5B DNA MER1_type 1 164 -14 1093 206 73 24 chr6 12245108 12245286 -177034268 - MER58B DNA MER1_type -2119 301 102 1651 181 40 13 chr6 12245286 12245590 -177033964 - AluJo SINE Alu 0 312 1 1093 206 73 24 chr6 12245590 12245698 -177033856 - MER58B DNA MER1_type -2318 102 1 28 0 0 0 chr6 12245934 12245962 -177033592 + AT_rich Low_complexity Low_complexity 1 28 0 209 194 0 0 chr6 12246194 12246230 -177033324 - MER5B DNA MER1_type -142 36 1 1959 90 7 25 chr6 12246261 12246538 -177033016 - AluY SINE Alu -2 309 38 809 179 0 8 chr6 12246568 12246702 -177032852 + FLAM_A SINE Alu 1 133 0 310 256 105 88 chr6 12246717 12246955 -177032599 - L1ME4a LINE L1 -12 6109 5868 24 32 0 0 chr6 12248372 12248403 -177031151 + AT_rich Low_complexity Low_complexity 1 31 0 1227 190 65 27 chr6 12248682 12249019 -177030535 - L1MD2 LINE L1 -1 6358 6009 23 33 0 0 chr6 12249099 12249129 -177030425 + AT_rich Low_complexity Low_complexity 1 30 0 1835 112 4 0 chr6 12249164 12249406 -177030148 + AluSp SINE Alu 1 243 -70 1077 198 49 64 chr6 12249459 12249787 -177029767 - MER21A LTR ERV1 -65 866 544 1819 171 0 16 chr6 12249792 12250096 -177029458 + AluJo SINE Alu 1 299 -13 2031 130 46 16 chr6 12250096 12250466 -177029088 - L1MB2 LINE L1 -257 5914 5534 282 177 63 13 chr6 12251620 12251699 -177027855 - MIR SINE MIR -13 249 167 3119 180 83 9 chr6 12252579 12253262 -177026292 - MER50 LTR ERV1 0 734 1 233 315 24 39 chr6 12253886 12254013 -177025541 - L2 LINE L2 -460 2854 2730 313 349 9 0 chr6 12254089 12254198 -177025356 + L2 LINE L2 3200 3309 -4 279 273 0 39 chr6 12254199 12254276 -177025278 + polypurine Low_complexity Low_complexity 2 75 0 402 246 26 7 chr6 12255087 12255305 -177024249 - L1ME LINE L1 -683 5481 5258 487 323 43 13 chr6 12255328 12255560 -177023994 - L1ME LINE L1 -912 5234 4996 742 214 78 29 chr6 12255567 12255773 -177023781 - MER58A DNA MER1_type 0 224 9 393 276 95 40 chr6 12255944 12256440 -177023114 - L1ME LINE L1 -1311 4835 4313 308 285 65 46 chr6 12256632 12256892 -177022662 + L1ME3A LINE L1 3414 3678 -2468 796 203 56 10 chr6 12256949 12257146 -177022408 - MER58 DNA MER1_type -2212 208 3 862 201 0 0 chr6 12257283 12257437 -177022117 - FRAM SINE Alu -3 173 20 843 267 74 65 chr6 12257802 12258470 -177021084 + L1ME3A LINE L1 5166 5842 -328 254 132 19 0 chr6 12258873 12258926 -177020628 + (CATA)n Simple_repeat Simple_repeat 3 56 0 383 305 134 25 chr6 12258948 12259187 -177020367 - L1MC4a LINE L1 -1903 5905 5641 446 238 47 35 chr6 12259294 12259466 -177020088 - L1MC4a LINE L1 -1070 5076 4903 583 271 173 0 chr6 12259515 12259729 -177019825 - MIR SINE MIR -2 260 10 522 289 80 20 chr6 12260165 12260366 -177019188 + MIR SINE MIR 28 240 -22 198 231 39 19 chr6 12260811 12260863 -177018691 + L3 LINE CR1 1514 1566 -11 36 53 0 0 chr6 12261087 12261144 -177018410 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr6 12264470 12264499 -177015055 + AT_rich Low_complexity Low_complexity 1 29 0 630 279 95 14 chr6 12265313 12265535 -177014019 + MIR SINE MIR 5 244 -18 2290 107 7 0 chr6 12266110 12266419 -177013135 - AluSp SINE Alu -2 311 1 23 54 0 0 chr6 12269067 12269104 -177010450 + AT_rich Low_complexity Low_complexity 1 37 0 1367 127 42 5 chr6 12269769 12269982 -177009572 + AluSg/x SINE Alu 83 303 -9 467 267 112 21 chr6 12270088 12270275 -177009279 - MIR SINE MIR -2 260 57 862 183 14 0 chr6 12270964 12271106 -177008448 - FRAM SINE Alu -32 144 1 642 211 8 15 chr6 12271296 12271429 -177008125 - FLAM_A SINE Alu -1 132 1 608 182 16 33 chr6 12272118 12272239 -177007315 - FLAM_A SINE Alu -11 131 13 300 327 40 0 chr6 12272343 12272444 -177007110 + MIR SINE MIR 39 143 -65 2085 116 0 7 chr6 12273126 12273418 -177006136 + AluSx SINE Alu 11 300 -12 4717 61 10 0 chr6 12273606 12274214 -177005340 - L1PA8A LINE L1 -4 6127 5514 205 247 79 34 chr6 12274272 12274361 -177005193 + MIR SINE MIR 47 139 -123 270 250 29 0 chr6 12274660 12274728 -177004826 - MIR SINE MIR -111 151 82 2428 85 0 0 chr6 12274816 12275111 -177004443 - AluSq SINE Alu -18 295 1 1873 156 17 43 chr6 12276884 12277161 -177002393 - MER1B DNA MER1_type -2373 337 69 2639 39 0 3 chr6 12277161 12277471 -177002083 - AluY SINE Alu -2 309 1 1873 156 17 43 chr6 12277471 12277539 -177002015 - MER1B DNA MER1_type -2641 69 1 2385 49 0 29 chr6 12277568 12277875 -177001679 - AluY SINE Alu -12 299 2 269 297 25 0 chr6 12277920 12278038 -177001516 - MER103 DNA DNA -10 156 36 1972 115 0 0 chr6 12278229 12278490 -177001064 - AluSx SINE Alu -51 261 1 438 253 99 12 chr6 12279248 12279410 -177000144 + MIR SINE MIR 13 188 -74 1774 152 3 7 chr6 12279636 12279925 -176999629 - AluJo SINE Alu -24 288 1 1096 206 42 36 chr6 12281520 12281826 -176997728 + L1MC4 LINE L1 7735 8042 0 28 48 0 0 chr6 12281881 12281923 -176997631 + AT_rich Low_complexity Low_complexity 1 42 0 270 81 0 0 chr6 12282436 12282473 -176997081 + (T)n Simple_repeat Simple_repeat 1 37 0 2362 74 3 3 chr6 12282488 12282785 -176996769 + AluY SINE Alu 2 298 -13 597 190 0 0 chr6 12282788 12282909 -176996645 - L1MA8 LINE L1 -3 6288 6168 364 161 99 0 chr6 12282909 12282990 -176996564 - Tigger3(Golem) DNA MER2_type -2 3027 2939 * 1262 216 87 0 chr6 12282988 12283298 -176996256 - Tigger3(Golem) DNA MER2_type -2692 337 1 3138 143 62 15 chr6 12283301 12283918 -176995636 - L1MA8 LINE L1 -127 6164 5519 31 0 0 0 chr6 12284335 12284366 -176995188 + AT_rich Low_complexity Low_complexity 1 31 0 1535 168 109 64 chr6 12284659 12285099 -176994455 - MER31B LTR ERV1 -6 460 1 940 185 69 14 chr6 12285205 12285540 -176994014 + MER31B LTR ERV1 1 466 0 2259 95 0 0 chr6 12285776 12286061 -176993493 + AluSg SINE Alu 1 285 -25 307 305 0 0 chr6 12286889 12286971 -176992583 + CT-rich Low_complexity Low_complexity 4 85 0 735 156 50 0 chr6 12287443 12287584 -176991970 - L1MA9 LINE L1 -5 6307 6160 2294 103 3 3 chr6 12287612 12287924 -176991630 - AluSx SINE Alu 0 312 1 490 183 11 48 chr6 12290914 12291100 -176988454 + GA-rich Low_complexity Low_complexity 2 180 0 345 281 83 0 chr6 12294259 12294380 -176985174 - L2 LINE L2 0 3313 3183 203 223 54 27 chr6 12294727 12294833 -176984721 + (TA)n Simple_repeat Simple_repeat 1 110 0 1496 207 74 0 chr6 12294833 12295157 -176984397 - MER7A DNA MER2_type 0 346 1 3687 196 70 78 chr6 12296654 12297262 -176982292 + MER45B DNA AcHobo 40 651 -930 2338 102 0 0 chr6 12297262 12297582 -176981972 + AluSx SINE Alu 1 320 0 3687 196 70 78 chr6 12297582 12297717 -176981837 + MER45B DNA AcHobo 651 786 -795 2024 122 0 20 chr6 12297717 12298046 -176981508 - AluSx SINE Alu 0 323 1 3687 196 70 78 chr6 12298046 12298289 -176981265 + MER45B DNA AcHobo 786 1024 -16 251 200 40 0 chr6 12298429 12298479 -176981075 - LTR16C LTR ERVL 0 491 440 2270 141 10 28 chr6 12298736 12299133 -176980421 + MLT1B LTR MaLR 1 390 0 507 283 21 16 chr6 12299246 12299433 -176980121 + MIR SINE MIR 26 213 -49 293 325 55 30 chr6 12299643 12299843 -176979711 - MIR SINE MIR -19 243 39 193 286 0 65 chr6 12299895 12299972 -176979582 - MIR SINE MIR -78 184 113 466 301 54 12 chr6 12300244 12300410 -176979144 + MIR3 SINE MIR 25 197 -11 357 293 184 0 chr6 12301435 12301582 -176977972 + MER5A DNA MER1_type 16 189 0 237 33 0 0 chr6 12301968 12301998 -176977556 + (CA)n Simple_repeat Simple_repeat 2 31 0 940 9 0 0 chr6 12302150 12302256 -176977298 + AluY SINE Alu 206 311 0 195 42 0 0 chr6 12302790 12302814 -176976740 + (TG)n Simple_repeat Simple_repeat 2 25 0 244 199 0 38 chr6 12302826 12302957 -176976597 + (TA)n Simple_repeat Simple_repeat 1 126 0 223 106 32 53 chr6 12303022 12303116 -176976438 + (TA)n Simple_repeat Simple_repeat 2 93 0 257 83 95 35 chr6 12303191 12303360 -176976194 + (TA)n Simple_repeat Simple_repeat 2 180 0 320 217 32 25 chr6 12303360 12303517 -176976037 + (TTATA)n Simple_repeat Simple_repeat 5 162 0 230 127 56 0 chr6 12303542 12303613 -176975941 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 335 169 8 49 chr6 12303616 12303866 -176975688 + (TA)n Simple_repeat Simple_repeat 1 239 0 237 234 39 0 chr6 12303878 12303955 -176975599 + (TA)n Simple_repeat Simple_repeat 1 80 0 2304 178 85 17 chr6 12304221 12304694 -176974860 - MLT1D LTR MaLR 0 505 1 2393 107 3 0 chr6 12305069 12305377 -176974177 + AluSq SINE Alu 1 309 -4 652 239 90 50 chr6 12306160 12306361 -176973193 - MER63A DNA MER1_type -1 209 1 240 346 8 0 chr6 12308055 12308188 -176971366 - L2 LINE L2 -785 2529 2396 261 257 50 30 chr6 12308558 12308659 -176970895 - L2 LINE L2 -1 3271 3169 1538 144 95 25 chr6 12308750 12309035 -176970519 - MLT1B LTR MaLR -85 305 1 7919 19 0 1 chr6 12309695 12311187 -176968367 - L1PA3 LINE L1 -3 6152 4660 631 267 224 0 chr6 12312037 12312318 -176967236 - LTR16A LTR ERVL -2 448 105 2023 161 45 29 chr6 12312320 12312741 -176966813 - MSTA LTR MaLR 0 428 1 327 313 92 54 chr6 12312919 12313333 -176966221 - MLT1L LTR MaLR -27 588 54 1669 107 0 0 chr6 12313610 12313825 -176965729 + AluSq SINE Alu 83 297 -16 292 336 21 7 chr6 12313825 12313965 -176965589 - L2 LINE L2 -954 2360 2219 1377 217 23 54 chr6 12314993 12315380 -176964174 + MLT1C LTR MaLR 53 427 -40 2325 114 0 0 chr6 12315415 12315721 -176963833 + AluSc SINE Alu 1 306 -3 208 224 59 94 chr6 12316088 12316173 -176963381 - MIR SINE MIR -71 191 110 469 162 0 178 chr6 12317381 12317572 -176961982 + MER69A DNA AcHobo 1 157 -20 219 148 33 16 chr6 12318166 12318227 -176961327 + CT-rich Low_complexity Low_complexity 2 63 0 250 282 14 0 chr6 12319145 12319216 -176960338 - L2 LINE L2 -2 3311 3240 238 289 116 8 chr6 12319694 12319815 -176959739 + MIR SINE MIR 118 251 -11 218 286 0 16 chr6 12320869 12320932 -176958622 - L2 LINE L2 -9 3304 3243 486 299 13 56 chr6 12321077 12321311 -176958243 - MARNA DNA Mariner -351 235 12 1605 118 12 16 chr6 12321700 12321945 -176957609 + AluJo SINE Alu 51 294 -18 418 28 0 56 chr6 12322054 12322126 -176957428 + SVA Other Other 1319 1386 0 24 67 0 0 chr6 12322135 12322180 -176957374 + AT_rich Low_complexity Low_complexity 1 45 0 309 323 21 0 chr6 12323045 12323138 -176956416 + MIR3 SINE MIR 86 180 -28 1160 127 0 0 chr6 12324019 12324176 -176955378 - AluSc SINE Alu -19 290 134 231 289 124 85 chr6 12324825 12325212 -176954342 + L2 LINE L2 2871 3272 0 215 133 22 0 chr6 12325474 12325519 -176954035 + (TG)n Simple_repeat Simple_repeat 1 46 0 496 175 108 0 chr6 12326904 12327024 -176952530 - MIR3 SINE MIR -5 203 71 2252 123 29 56 chr6 12327846 12328007 -176951547 + THE1B LTR MaLR 1 165 -199 2205 62 80 0 chr6 12328007 12328281 -176951273 - AluY SINE Alu -15 296 1 2252 123 29 56 chr6 12328281 12328493 -176951061 + THE1B LTR MaLR 165 364 0 202 250 0 33 chr6 12329576 12329636 -176949918 - MIR SINE MIR -66 142 85 1806 173 10 0 chr6 12330157 12330452 -176949102 + 7SLRNA srpRNA srpRNA 20 317 -3 2025 134 7 3 chr6 12330610 12330900 -176948654 + AluSc SINE Alu 1 291 -18 2328 105 0 0 chr6 12332002 12332297 -176947257 + AluSq SINE Alu 1 295 -18 336 297 48 41 chr6 12333567 12333738 -176945816 - MIR3 SINE MIR -15 193 20 705 233 0 11 chr6 12333785 12333961 -176945593 - L1MB8 LINE L1 0 6178 6005 226 231 0 19 chr6 12333963 12334015 -176945539 - L1MB8 LINE L1 -790 5384 5334 626 198 23 4 chr6 12334018 12334151 -176945403 - L1MB8 LINE L1 -170 5994 5857 1172 93 0 0 chr6 12334151 12334302 -176945252 - AluY SINE Alu -3 308 158 3219 170 35 29 chr6 12334302 12334749 -176944805 - L1MB8 LINE L1 -299 5879 5427 5219 109 30 8 chr6 12334749 12335512 -176944042 + LTR17 LTR ERV1 1 780 0 3219 170 35 29 chr6 12335512 12335795 -176943759 - L1MB8 LINE L1 -751 5427 5147 210 37 0 0 chr6 12337305 12337332 -176942222 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 327 304 88 48 chr6 12337505 12337778 -176941776 - MLT1L LTR MaLR -330 285 2 2085 109 0 0 chr6 12338174 12338448 -176941106 - AluSx SINE Alu -30 282 9 1158 68 0 0 chr6 12338459 12338592 -176940962 - AluSq/x SINE Alu -179 133 1 2369 79 10 10 chr6 12338602 12338907 -176940647 - AluSp SINE Alu -8 305 1 181 322 122 0 chr6 12339034 12339124 -176940430 - MIR SINE MIR -115 147 47 474 33 0 0 chr6 12339454 12339514 -176940040 + (TG)n Simple_repeat Simple_repeat 2 61 0 1479 168 50 21 chr6 12340135 12340415 -176939139 + AluJo SINE Alu 2 289 -23 310 303 25 8 chr6 12340588 12340707 -176938847 + MIR3 SINE MIR 65 185 -23 1149 50 21 0 chr6 12341618 12341759 -176937795 - AluY SINE Alu 0 311 168 225 94 0 0 chr6 12342538 12342570 -176936984 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 267 333 61 9 chr6 12342575 12342689 -176936865 - L2 LINE L2 -16 3256 3137 208 328 55 47 chr6 12342809 12343044 -176936510 - L2 LINE L2 -212 3060 2824 432 0 0 0 chr6 12343119 12343167 -176936387 + (CA)n Simple_repeat Simple_repeat 2 49 0 377 329 43 14 chr6 12343232 12343439 -176936115 - HERVL LTR ERVL -3685 1969 1757 302 299 60 15 chr6 12343947 12344148 -176935406 - HERVL LTR ERVL -4577 1187 978 660 304 50 5 chr6 12344675 12344876 -176934678 + LTR16C LTR ERVL 50 259 -232 2026 142 30 0 chr6 12344878 12345180 -176934374 - AluSx SINE Alu -1 311 1 227 339 157 0 chr6 12345698 12345813 -176933741 + MIR3 SINE MIR 63 195 -13 247 246 0 0 chr6 12345818 12345875 -176933679 + GA-rich Low_complexity Low_complexity 3 59 0 360 306 82 20 chr6 12345885 12346081 -176933473 - MIR SINE MIR -54 208 1 448 222 187 12 chr6 12346480 12346651 -176932903 + L1ME3A LINE L1 5782 5982 -188 244 273 82 87 chr6 12346654 12346885 -176932669 + L1ME3A LINE L1 5924 6153 -17 1378 254 49 5 chr6 12346932 12347361 -176932193 + L1MD2 LINE L1 3375 3822 -2324 327 131 0 47 chr6 12347361 12347379 -176932175 - AluS SINE Alu -242 57 40 1505 129 21 0 chr6 12347379 12347612 -176931942 - AluSg/x SINE Alu -2 308 71 327 131 0 47 chr6 12347612 12347671 -176931883 - AluS SINE Alu -259 40 1 5332 161 16 5 chr6 12347702 12347986 -176931568 - L1PA16 LINE L1 -56 6110 5831 2111 135 6 0 chr6 12347986 12348297 -176931257 - AluSp SINE Alu 0 313 1 5332 161 16 5 chr6 12348297 12349592 -176929962 - L1PA16 LINE L1 -335 5831 4517 1546 182 40 17 chr6 12349617 12349913 -176929641 - MER61A LTR ERV1 -40 303 1 1116 224 54 62 chr6 12349918 12350307 -176929247 - L1 LINE L1 -1636 4510 4125 1045 243 68 0 chr6 12350307 12350587 -176928967 + L1P LINE L1 3826 4124 -2022 1028 211 13 125 chr6 12350583 12350996 -176928558 + L1MD2 LINE L1 5774 6074 -168 * 545 221 18 37 chr6 12350997 12351160 -176928394 + L1MD3 LINE L1 7835 7994 -1 374 289 49 104 chr6 12351163 12351595 -176927959 - L2 LINE L2 -621 2693 2286 25 0 0 0 chr6 12351629 12351654 -176927900 + AT_rich Low_complexity Low_complexity 1 25 0 298 89 357 0 chr6 12351773 12351829 -176927725 - MADE1 DNA Mariner 0 80 5 442 340 149 0 chr6 12351830 12352092 -176927462 - L2 LINE L2 -1262 2052 1752 1156 135 6 0 chr6 12352824 12352994 -176926560 - AluSg/x SINE Alu -13 299 129 867 144 0 0 chr6 12353020 12353145 -176926409 + AluSg SINE Alu 1 125 -185 246 116 0 0 chr6 12353475 12353518 -176926036 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 250 261 0 27 chr6 12353542 12353616 -176925938 - L1MD3 LINE L1 -21 8021 7897 695 174 237 19 chr6 12353627 12353834 -176925720 - L1MC4a LINE L1 -159 7649 7398 309 233 56 44 chr6 12354488 12354578 -176924976 - L2 LINE L2 0 3272 3182 304 351 102 48 chr6 12354633 12354878 -176924676 - L2 LINE L2 -358 2956 2683 3052 63 68 36 chr6 12354878 12355322 -176924232 - LTR22A LTR ERVK 0 458 1 304 351 102 48 chr6 12355322 12355449 -176924105 - L2 LINE L2 -631 2683 2564 698 228 60 11 chr6 12355509 12355700 -176923854 + MIR SINE MIR 46 243 -19 241 240 67 0 chr6 12355823 12355898 -176923656 - LTR67 LTR ERVL 0 557 478 3498 269 53 53 chr6 12355923 12357595 -176921959 + L1MEc LINE L1 44 1716 -4680 2419 224 59 48 chr6 12357601 12358819 -176920735 + L1MEc LINE L1 1914 3114 -3101 421 227 0 36 chr6 12358831 12358941 -176920613 + L1M4 LINE L1 4762 4867 -1279 282 289 138 19 chr6 12358959 12359118 -176920436 - LTR67 LTR ERVL -269 288 111 195 309 181 11 chr6 12359224 12359318 -176920236 + MIR SINE MIR 103 212 -50 1959 141 64 6 chr6 12360015 12360341 -176919213 - MER7A DNA MER2_type 0 346 4 2673 192 9 24 chr6 12360402 12360949 -176918605 - L1MC3 LINE L1 0 7785 7247 2128 127 7 86 chr6 12361778 12362196 -176917358 - MLT1B LTR MaLR 0 390 6 3008 234 60 30 chr6 12362198 12363259 -176916295 - Charlie2a DNA MER1_type -7 2855 1763 652 325 50 14 chr6 12363270 12363550 -176916004 - LTR16C LTR ERVL 0 491 202 3177 225 119 49 chr6 12363753 12364031 -176915523 - Charlie2a DNA MER1_type -1176 1686 1429 1958 144 7 10 chr6 12364031 12364336 -176915218 + AluJb SINE Alu 1 304 -8 3177 225 119 49 chr6 12364336 12365430 -176914124 - Charlie2a DNA MER1_type -1433 1429 217 585 303 67 14 chr6 12365519 12365803 -176913751 - L1ME LINE L1 -554 5616 5318 739 287 113 4 chr6 12365956 12366186 -176913368 - MIR SINE MIR -2 260 6 250 333 118 0 chr6 12366314 12366416 -176913138 - L2 LINE L2 -23 3249 3136 3416 119 20 4 chr6 12366513 12367016 -176912538 - MER9 LTR ERVK 0 511 1 232 326 240 27 chr6 12367028 12367286 -176912268 - L3 LINE CR1 -612 965 653 1966 237 59 11 chr6 12368541 12369064 -176910490 + Cheshire DNA MER1_type 1 548 -1872 * 7446 198 47 15 chr6 12369060 12370705 -176908849 + Cheshire DNA MER1_type 723 2420 0 1166 316 67 48 chr6 12370782 12371622 -176907932 - ERVL LTR ERVL -4146 1618 763 203 138 0 0 chr6 12371925 12371954 -176907600 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 411 344 13 0 chr6 12372851 12373002 -176906552 + MIR3 SINE MIR 54 206 -2 399 41 0 0 chr6 12373222 12373271 -176906283 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 43 0 0 chr6 12373270 12373293 -176906261 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 193 75 50 25 chr6 12374064 12374104 -176905450 + CT-rich Low_complexity Low_complexity 2 42 0 758 220 143 67 chr6 12374521 12374652 -176904902 + LTR50 LTR ERVL 1 121 -674 2036 102 9 78 chr6 12374652 12374984 -176904570 - AluSx SINE Alu -3 309 1 758 220 143 67 chr6 12374984 12375166 -176904388 + LTR50 LTR ERVL 121 338 -457 203 138 0 0 chr6 12375517 12375546 -176904008 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1166 316 67 48 chr6 12375849 12376689 -176902865 + ERVL LTR ERVL 763 1618 -4146 7480 198 47 15 chr6 12376766 12378410 -176901144 - Cheshire DNA MER1_type 0 2420 723 1992 238 55 11 chr6 12378406 12378931 -176900623 - Cheshire DNA MER1_type -1872 548 1 * 232 326 240 27 chr6 12380186 12380444 -176899110 + L3 LINE CR1 653 965 -612 3386 119 20 6 chr6 12380456 12380960 -176898594 + MER9 LTR ERVK 1 511 0 250 333 118 0 chr6 12381057 12381159 -176898395 + L2 LINE L2 3136 3249 -23 752 283 113 4 chr6 12381287 12381517 -176898037 + MIR SINE MIR 6 260 -2 585 303 67 14 chr6 12381670 12381954 -176897600 + L1ME LINE L1 5318 5616 -554 3181 225 119 49 chr6 12382043 12383137 -176896417 + Charlie2a DNA MER1_type 217 1429 -1433 1958 144 7 10 chr6 12383137 12383442 -176896112 - AluJb SINE Alu -8 304 1 3181 225 119 49 chr6 12383442 12383720 -176895834 + Charlie2a DNA MER1_type 1429 1686 -1176 652 325 50 14 chr6 12383923 12384203 -176895351 + LTR16C LTR ERVL 202 491 0 2994 235 60 30 chr6 12384214 12385275 -176894279 + Charlie2a DNA MER1_type 1763 2855 -7 2128 127 7 86 chr6 12385277 12385695 -176893859 + MLT1B LTR MaLR 6 390 0 2673 192 9 24 chr6 12386524 12387071 -176892483 + L1MC3 LINE L1 7247 7785 0 1959 141 64 6 chr6 12387132 12387458 -176892096 + MER7A DNA MER2_type 4 346 0 195 309 181 11 chr6 12388155 12388249 -176891305 - MIR SINE MIR -50 212 103 282 289 138 19 chr6 12388355 12388514 -176891040 + LTR67 LTR ERVL 111 288 -269 431 225 83 0 chr6 12388532 12388652 -176890902 - L1M4 LINE L1 -1279 4936 4807 2422 229 73 49 chr6 12388654 12389872 -176889682 - L1MEc LINE L1 -3101 3114 1914 3512 269 53 53 chr6 12389878 12391550 -176888004 - L1MEc LINE L1 -4680 1716 44 241 240 67 0 chr6 12391575 12391650 -176887904 + LTR67 LTR ERVL 478 557 0 698 228 60 11 chr6 12391773 12391964 -176887590 - MIR SINE MIR -19 243 46 295 354 102 48 chr6 12392024 12392151 -176887403 + L2 LINE L2 2564 2683 -631 3052 63 68 36 chr6 12392151 12392595 -176886959 + LTR22A LTR ERVK 1 458 0 295 354 102 48 chr6 12392595 12392840 -176886714 + L2 LINE L2 2683 2956 -358 309 233 56 44 chr6 12392895 12392985 -176886569 + L2 LINE L2 3182 3272 0 695 174 237 19 chr6 12393639 12393846 -176885708 + L1MC4a LINE L1 7398 7649 -159 250 261 0 27 chr6 12393857 12393931 -176885623 + L1MD3 LINE L1 7897 8021 -21 246 116 0 0 chr6 12393955 12393998 -176885556 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 867 144 0 0 chr6 12394328 12394453 -176885101 - AluSg SINE Alu -185 125 1 1156 135 6 0 chr6 12394479 12394649 -176884905 + AluSg/x SINE Alu 127 297 -13 442 340 149 0 chr6 12395381 12395643 -176883911 + L2 LINE L2 1752 2052 -1262 298 89 357 0 chr6 12395644 12395700 -176883854 - MADE1 DNA Mariner -4 76 1 25 0 0 0 chr6 12395819 12395844 -176883710 + AT_rich Low_complexity Low_complexity 1 25 0 374 289 49 104 chr6 12395878 12396310 -176883244 + L2 LINE L2 2286 2693 -621 545 221 18 37 chr6 12396313 12396476 -176883078 - L1MD3 LINE L1 -1 7994 7835 1028 211 13 125 chr6 12396477 12396890 -176882664 - L1MD2 LINE L1 -168 6074 5774 * 1102 243 68 0 chr6 12396886 12397166 -176882388 - L1 LINE L1 -2022 4124 3826 1189 224 54 62 chr6 12397166 12397555 -176881999 + L1 LINE L1 4125 4510 -1636 1555 182 40 17 chr6 12397560 12397856 -176881698 + MER61A LTR ERV1 1 303 -40 5630 125 46 7 chr6 12397881 12399176 -176880378 + L1PA16 LINE L1 4517 5865 -301 2130 135 6 0 chr6 12399176 12399487 -176880067 + AluSp SINE Alu 1 313 0 5630 125 46 7 chr6 12399487 12399792 -176879762 + L1PA16 LINE L1 5865 6157 -9 317 87 0 11 chr6 12399802 12399859 -176879695 + Alu SINE Alu 1 40 -262 1523 129 21 0 chr6 12399861 12400094 -176879460 + AluSg/x SINE Alu 73 310 -2 1513 254 48 5 chr6 12400101 12400541 -176879013 - L1MD2 LINE L1 -2313 3833 3375 250 273 82 87 chr6 12400588 12400819 -176878735 - L1ME3A LINE L1 -17 6153 5924 466 222 187 12 chr6 12400822 12400993 -176878561 - L1ME3A LINE L1 -188 5982 5782 416 306 82 20 chr6 12401392 12401588 -176877966 + MIR SINE MIR 1 208 -54 247 246 0 0 chr6 12401598 12401655 -176877899 + CT-rich Low_complexity Low_complexity 3 59 0 259 339 157 0 chr6 12401660 12401775 -176877779 - MIR3 SINE MIR -13 195 63 2010 142 30 0 chr6 12402293 12402595 -176876959 + AluSx SINE Alu 1 311 -1 626 304 50 5 chr6 12402597 12402798 -176876756 - LTR16C LTR ERVL -232 259 50 288 304 60 15 chr6 12403325 12403526 -176876028 + ERVL LTR ERVL 978 1187 -4577 376 329 43 14 chr6 12404034 12404241 -176875313 + ERVL LTR ERVL 1757 1969 -3685 288 0 0 0 chr6 12404306 12404338 -176875216 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 302 47 120 chr6 12404413 12404880 -176874674 + L2 LINE L2 2824 3256 -16 225 94 0 0 chr6 12404885 12404917 -176874637 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1153 43 21 0 chr6 12405699 12405840 -176873714 + AluY SINE Alu 168 311 0 727 283 113 4 chr6 12406320 12406550 -176873004 - MIR SINE MIR -2 260 6 239 333 118 0 chr6 12406678 12406780 -176872774 - L2 LINE L2 -23 3249 3136 3644 119 20 6 chr6 12406877 12407381 -176872173 - MER9 LTR ERVK 0 511 1 218 326 240 27 chr6 12407393 12407651 -176871903 - L3 LINE CR1 -612 965 653 2052 238 57 2 chr6 12408936 12409431 -176870123 + Cheshire DNA MER1_type 27 548 -1872 * 7767 198 47 15 chr6 12409427 12411071 -176868483 + Cheshire DNA MER1_type 723 2420 0 1205 313 67 48 chr6 12411148 12411988 -176867566 - ERVL LTR ERVL -4146 1618 763 203 138 0 0 chr6 12412291 12412320 -176867234 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 773 208 167 67 chr6 12412673 12412853 -176866701 - LTR50 LTR ERVL -452 343 182 2056 102 9 78 chr6 12412853 12413185 -176866369 + AluSx SINE Alu 1 309 -3 773 208 167 67 chr6 12413185 12413316 -176866238 - LTR50 LTR ERVL -613 182 1 193 75 50 25 chr6 12413733 12413773 -176865781 + GA-rich Low_complexity Low_complexity 2 42 0 186 43 0 0 chr6 12414544 12414567 -176864987 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 399 41 0 0 chr6 12414566 12414615 -176864939 + (TG)n Simple_repeat Simple_repeat 2 50 0 398 344 13 0 chr6 12414835 12414986 -176864568 - MIR3 SINE MIR -2 206 54 5804 90 15 4 chr6 12415587 12416396 -176863158 + L1PA13 LINE L1 5346 6163 0 251 387 34 8 chr6 12416639 12416758 -176862796 + MIR3 SINE MIR 39 160 -48 1512 188 189 103 chr6 12416808 12417410 -176862144 + MLT1E1 LTR MaLR 1 654 0 674 211 0 0 chr6 12417410 12417553 -176862001 + FLAM_A SINE Alu 2 144 0 1727 152 157 11 chr6 12419551 12419914 -176859640 + MSTA LTR MaLR 1 416 -12 248 228 18 0 chr6 12420965 12421022 -176858532 + MIR SINE MIR 72 129 -133 357 341 32 0 chr6 12421313 12421439 -176858115 - L2 LINE L2 -4 3309 3180 1807 196 66 62 chr6 12421489 12422019 -176857535 + L1ME2 LINE L1 5631 6162 -2 426 237 21 57 chr6 12422018 12422212 -176857342 - L1M4 LINE L1 -1725 4421 4235 * 708 287 48 63 chr6 12422224 12422385 -176857169 - L1MEd LINE L1 -5014 1105 943 1790 180 20 3 chr6 12422385 12422690 -176856864 - AluSp SINE Alu -3 310 1 708 287 48 63 chr6 12422690 12423116 -176856438 - L1MEd LINE L1 -5176 943 527 1966 130 146 16 chr6 12423473 12423795 -176855759 + THE1B LTR MaLR 1 364 0 183 162 0 0 chr6 12424080 12424117 -176855437 + A-rich Low_complexity Low_complexity 1 37 0 749 207 0 0 chr6 12424255 12424376 -176855178 - FLAM_A SINE Alu -12 121 1 1714 251 83 21 chr6 12424474 12424957 -176854597 - MLT1F LTR MaLR -29 513 1 1789 267 33 100 chr6 12424957 12425631 -176853923 + L1MC4a LINE L1 5276 5903 -1905 1295 147 0 5 chr6 12425871 12426120 -176853434 + AluJo SINE Alu 87 334 0 227 344 0 0 chr6 12426460 12426521 -176853033 + L2 LINE L2 3250 3310 -3 306 0 0 0 chr6 12426885 12426919 -176852635 + (TA)n Simple_repeat Simple_repeat 2 35 0 2129 127 0 0 chr6 12427140 12427488 -176852066 + AluSx SINE Alu 1 312 0 246 316 101 48 chr6 12428104 12428332 -176851222 - MIR SINE MIR -13 249 10 953 205 5 30 chr6 12429189 12429389 -176850165 - MLT2D LTR ERVL 0 414 220 703 209 25 13 chr6 12429751 12429909 -176849645 + MER5B DNA MER1_type 10 169 -9 246 339 161 5 chr6 12430217 12430403 -176849151 + MIR SINE MIR 36 250 -12 1110 189 81 146 chr6 12430556 12430929 -176848625 + MLT1C LTR MaLR 53 449 -18 306 0 0 0 chr6 12430929 12430963 -176848591 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1938 103 0 48 chr6 12430963 12431255 -176848299 - AluSg SINE Alu -32 278 1 1110 189 81 146 chr6 12431255 12431324 -176848230 + MLT1C LTR MaLR 447 467 0 2276 97 3 3 chr6 12432200 12432500 -176847054 + AluSq SINE Alu 2 301 -12 388 263 63 74 chr6 12433162 12433352 -176846202 - MER112 DNA MER1_type -34 226 39 270 351 53 0 chr6 12433486 12433580 -176845974 - L2 LINE L2 -11 3261 3163 297 51 0 0 chr6 12433986 12434025 -176845529 + (CA)n Simple_repeat Simple_repeat 2 40 0 2055 153 0 0 chr6 12434202 12434503 -176845051 + AluSx SINE Alu 1 301 -11 2956 128 17 2 chr6 12435735 12436157 -176843397 - MSTA LTR MaLR 0 428 1 214 282 28 14 chr6 12436221 12436292 -176843262 - MIR SINE MIR -103 159 88 221 294 22 76 chr6 12436530 12436622 -176842932 - MIR SINE MIR -156 106 20 575 181 78 0 chr6 12436628 12436744 -176842810 + LTR64 LTR ERVK 1 125 -433 1567 160 111 0 chr6 12436745 12437033 -176842521 + LTR64 LTR ERVK 227 546 -12 291 209 0 128 chr6 12438735 12438780 -176840774 + MIR SINE MIR 76 107 -101 919 216 14 38 chr6 12438780 12438993 -176840561 - MER63A DNA MER1_type 0 210 3 291 209 0 128 chr6 12438993 12439033 -176840521 + MIR SINE MIR 107 150 -58 21 0 0 0 chr6 12440438 12440459 -176839095 + AT_rich Low_complexity Low_complexity 1 21 0 349 289 40 69 chr6 12440465 12440638 -176838916 + MIR3 SINE MIR 30 197 -11 1473 157 30 90 chr6 12442105 12442437 -176837117 - AluJo SINE Alu 0 312 1 2083 124 0 34 chr6 12443167 12443490 -176836064 - AluSx SINE Alu 0 312 1 194 277 21 0 chr6 12444450 12444497 -176835057 + MIR3 SINE MIR 123 170 -38 410 230 11 11 chr6 12445667 12445754 -176833800 + MER5A DNA MER1_type 20 106 -83 639 251 22 28 chr6 12445846 12446025 -176833529 - MER5B DNA MER1_type 0 178 1 485 338 27 5 chr6 12446356 12446575 -176832979 - MIR SINE MIR -25 237 14 190 315 20 98 chr6 12446796 12446940 -176832614 - MIR3 SINE MIR -19 189 64 1909 50 0 0 chr6 12446940 12447162 -176832392 - AluY SINE Alu -16 295 74 190 315 20 98 chr6 12447162 12447220 -176832334 - MIR3 SINE MIR -144 64 3 184 312 85 35 chr6 12447546 12447687 -176831867 - L2 LINE L2 -149 3123 2976 213 301 39 29 chr6 12447788 12447891 -176831663 - L2 LINE L2 -493 2821 2718 25 0 0 0 chr6 12447984 12448009 -176831545 + AT_rich Low_complexity Low_complexity 1 25 0 2141 108 0 3 chr6 12450241 12450556 -176828998 + AluSq SINE Alu 1 314 0 866 249 21 9 chr6 12451086 12451319 -176828235 + MIR SINE MIR 1 236 -26 235 175 0 0 chr6 12451411 12451451 -176828103 - MLT1I LTR MaLR 0 409 370 301 132 19 0 chr6 12451602 12451655 -176827899 + MER96 DNA MER1_type? 1 54 -121 4715 146 34 59 chr6 12451662 12452170 -176827384 + L1MB3 LINE L1 5165 5684 -499 1664 86 0 5 chr6 12452170 12452380 -176827174 + AluY SINE Alu 89 297 -14 4715 146 34 59 chr6 12452380 12452721 -176826833 + L1MB3 LINE L1 5684 5989 -194 2148 164 132 2 chr6 12452721 12453124 -176826430 + MSTB2 LTR MaLR 3 457 0 4715 146 34 59 chr6 12453124 12453312 -176826242 + L1MB3 LINE L1 5989 6180 -3 231 240 20 0 chr6 12453315 12453365 -176826189 + MER96 DNA MER1_type? 47 97 -78 2225 109 3 0 chr6 12453490 12453784 -176825770 - AluSg SINE Alu -15 295 1 510 173 0 0 chr6 12454369 12454473 -176825081 + GA-rich Low_complexity Low_complexity 1 104 0 402 305 78 95 chr6 12454824 12455234 -176824320 + L2 LINE L2 2867 3269 -3 413 308 8 8 chr6 12456136 12456253 -176823301 + MER5B DNA MER1_type 3 119 -59 247 257 112 107 chr6 12459415 12459602 -176819952 + MIR3 SINE MIR 16 203 -5 348 206 71 71 chr6 12459632 12459787 -176819767 + L2 LINE L2 2589 2743 -571 266 327 109 42 chr6 12459844 12460174 -176819380 + L2 LINE L2 2882 3233 -39 424 308 70 0 chr6 12460705 12460848 -176818706 - MER117 DNA MER1_type 0 197 45 1133 98 252 60 chr6 12462441 12462675 -176816879 - AluSg1 SINE Alu -30 279 1 240 231 0 0 chr6 12462685 12462763 -176816791 + (CA)n Simple_repeat Simple_repeat 2 79 0 494 321 0 22 chr6 12462802 12462986 -176816568 + (CA)n Simple_repeat Simple_repeat 1 180 0 439 217 39 39 chr6 12464432 12464561 -176814993 + MIR SINE MIR 86 214 -48 384 265 20 61 chr6 12467670 12467866 -176811688 + L1MC4 LINE L1 7854 8041 -1 2376 154 32 17 chr6 12470432 12470841 -176808713 + MSTB LTR MaLR 10 424 -2 243 0 0 0 chr6 12471635 12471662 -176807892 + (TC)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr6 12471661 12471688 -176807866 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 2330 105 3 0 chr6 12472249 12472554 -176807000 - AluSx SINE Alu -6 306 1 307 314 39 44 chr6 12472626 12472830 -176806724 - L2 LINE L2 -1000 2314 2112 1065 148 37 42 chr6 12472831 12473047 -176806507 - MER20 DNA MER1_type 0 219 5 987 298 127 53 chr6 12474892 12476212 -176803342 - L2 LINE L2 0 3313 1893 1703 182 10 3 chr6 12477317 12477613 -176801941 - AluJb SINE Alu -14 298 1 540 313 58 29 chr6 12478119 12478633 -176800921 - L1MEc LINE L1 -4614 1782 1254 236 247 65 65 chr6 12478633 12478787 -176800767 - L1MEc LINE L1 -5960 245 92 280 297 95 40 chr6 12479143 12479291 -176800263 - MLT2E LTR ERVL -425 203 48 245 406 0 0 chr6 12479485 12479586 -176799968 - MIR SINE MIR -78 130 30 1066 179 200 21 chr6 12482559 12482823 -176796731 + AluSx SINE Alu 1 307 0 677 98 59 0 chr6 12482950 12483052 -176796502 + L1MD1 LINE L1 6129 6236 -6 403 242 76 8 chr6 12483242 12483374 -176796180 + MIR3 SINE MIR 54 194 -14 1637 186 88 77 chr6 12483955 12484412 -176795142 + MLT1C LTR MaLR 6 467 0 2439 25 7 0 chr6 12484909 12485193 -176794361 + L1PA4 LINE L1 5867 6152 -3 22 0 0 0 chr6 12485193 12485215 -176794339 + AT_rich Low_complexity Low_complexity 1 22 0 2075 221 33 35 chr6 12486116 12486601 -176792953 + MLT1D LTR MaLR 7 490 -15 1186 260 54 59 chr6 12486716 12487313 -176792241 + L2 LINE L2 1860 2453 -861 711 326 120 13 chr6 12487392 12487904 -176791650 + L2 LINE L2 2747 3301 -12 367 272 33 82 chr6 12491158 12491342 -176788212 + MIR SINE MIR 46 220 -42 207 0 0 0 chr6 12491359 12491382 -176788172 + (A)n Simple_repeat Simple_repeat 1 23 0 1408 81 0 0 chr6 12491784 12491958 -176787596 - AluSp SINE Alu -5 308 135 1421 151 163 4 chr6 12493555 12493800 -176785754 + AluJb SINE Alu 2 285 -17 516 230 32 8 chr6 12495919 12496045 -176783509 + MER5A DNA MER1_type 25 153 -36 715 139 197 0 chr6 12496068 12496205 -176783349 + L1PA15 LINE L1 6001 6164 -1 278 156 172 115 chr6 12496369 12496491 -176783063 - MIR SINE MIR -11 251 123 668 176 0 29 chr6 12496662 12496798 -176782756 - MER5B DNA MER1_type -44 134 3 2189 114 69 32 chr6 12498099 12498475 -176781079 + MLT1B LTR MaLR 1 390 0 307 304 11 0 chr6 12498940 12499032 -176780522 - L3b LINE CR1 -84 1499 1407 192 269 19 0 chr6 12499545 12499597 -176779957 - L2 LINE L2 0 3272 3220 201 196 0 0 chr6 12499677 12499723 -176779831 + GA-rich Low_complexity Low_complexity 1 46 0 805 281 88 16 chr6 12499756 12500119 -176779435 - LTR16A LTR ERVL -3 447 59 363 256 141 16 chr6 12500178 12500299 -176779255 - MIR SINE MIR -125 137 2 2094 105 3 14 chr6 12500491 12500805 -176778749 + AluSg SINE Alu 1 311 0 433 328 29 0 chr6 12501777 12501948 -176777606 - MIR SINE MIR -39 223 48 189 0 0 0 chr6 12503711 12503732 -176775822 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 103 0 0 chr6 12503918 12503947 -176775607 + (TG)n Simple_repeat Simple_repeat 1 29 0 1947 185 14 11 chr6 12506433 12506795 -176772759 - MLT1A1 LTR MaLR -2 363 1 488 269 51 56 chr6 12506877 12507093 -176772461 - MIR SINE MIR 0 262 48 2195 158 42 37 chr6 12507093 12507636 -176771918 + MLT2A2 LTR ERVL 1 554 0 2686 20 0 7 chr6 12507726 12508022 -176771532 - AluY SINE Alu -17 294 1 25 31 0 0 chr6 12508359 12508391 -176771163 + AT_rich Low_complexity Low_complexity 1 32 0 36 91 0 0 chr6 12508436 12508535 -176771019 + AT_rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr6 12508640 12508668 -176770886 + AT_rich Low_complexity Low_complexity 1 28 0 358 283 116 47 chr6 12509129 12509405 -176770149 - L2 LINE L2 0 3313 3019 440 322 89 46 chr6 12509435 12510043 -176769511 + L2 LINE L2 2067 2700 -614 277 290 0 0 chr6 12510512 12510574 -176768980 + L2 LINE L2 3242 3303 -10 5590 131 26 46 chr6 12510576 12511442 -176768112 + L1MA8 LINE L1 5296 6139 -152 1797 176 17 0 chr6 12511442 12511737 -176767817 + AluJb SINE Alu 1 300 -12 5590 131 26 46 chr6 12511737 12511884 -176767670 + L1MA8 LINE L1 6139 6288 -3 218 296 91 23 chr6 12512032 12512120 -176767434 - L2 LINE L2 -64 3208 3115 235 231 176 33 chr6 12512990 12513081 -176766473 + LTR33 LTR ERVL 418 521 0 180 337 137 0 chr6 12513088 12513183 -176766371 + L2 LINE L2 3154 3261 -11 7253 152 17 0 chr6 12513189 12515349 -176764205 + LTR21B-int LTR ERV1 3071 5333 -1196 734 254 0 11 chr6 12515674 12515855 -176763699 + LTR21B-int LTR ERV1 4953 5131 -455 2076 304 32 36 chr6 12516670 12517733 -176761821 + LTR21B-int LTR ERV1 5471 6529 0 1901 164 8 106 chr6 12517733 12518215 -176761339 + LTR21B LTR ERV1 1 435 -3 4558 199 66 66 chr6 12518242 12518903 -176760651 - L1MDb LINE L1 -3873 2714 2054 2772 32 0 3 chr6 12518903 12519215 -176760339 + AluY SINE Alu 1 311 0 4558 199 66 66 chr6 12519215 12520516 -176759038 - L1MDb LINE L1 -4533 2054 750 521 191 12 0 chr6 12520516 12520600 -176758954 - MER20 DNA MER1_type -134 85 1 2250 113 0 0 chr6 12520987 12521296 -176758258 + AluSg SINE Alu 1 309 -1 1989 113 11 11 chr6 12522817 12523099 -176756455 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr6 12523103 12523135 -176756419 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 521 338 0 15 chr6 12523135 12523339 -176756215 + MIR SINE MIR 60 260 -2 27 62 0 0 chr6 12523814 12523862 -176755692 + AT_rich Low_complexity Low_complexity 1 48 0 450 330 29 38 chr6 12523879 12524118 -176755436 - MIR SINE MIR 0 262 26 302 224 0 0 chr6 12524122 12524189 -176755365 + L1MC2 LINE L1 6259 6325 -19 22 0 0 0 chr6 12524192 12524214 -176755340 + AT_rich Low_complexity Low_complexity 1 22 0 350 175 0 0 chr6 12524376 12524439 -176755115 + MIR SINE MIR 199 261 -1 225 154 0 0 chr6 12524439 12524478 -176755076 + (CACCAT)n Simple_repeat Simple_repeat 4 42 0 901 184 54 11 chr6 12525298 12525483 -176754071 + MER3 DNA MER1_type 1 193 -16 525 250 10 0 chr6 12525484 12525588 -176753966 + MER81 DNA DNA 10 114 0 2128 101 0 11 chr6 12525820 12526106 -176753448 + AluSq SINE Alu 2 284 -29 2666 206 41 52 chr6 12526107 12526214 -176753340 - L1ME1 LINE L1 -108 6058 5951 1426 169 0 114 chr6 12526214 12526564 -176752990 - AluJo SINE Alu -2 310 1 2666 206 41 52 chr6 12526564 12526841 -176752713 - L1ME1 LINE L1 -215 5951 5672 696 188 0 39 chr6 12526841 12526969 -176752585 - FLAM_A SINE Alu -10 123 1 2666 206 41 52 chr6 12526969 12527257 -176752297 - L1ME1 LINE L1 -494 5672 5391 1811 181 3 7 chr6 12527257 12527555 -176751999 + AluJb SINE Alu 1 297 -15 2666 206 41 52 chr6 12527555 12527617 -176751937 - L1ME1 LINE L1 -775 5391 5330 338 131 16 16 chr6 12527620 12527681 -176751873 - AluJ/FRAM SINE Alu -10 292 232 396 103 35 0 chr6 12527686 12527744 -176751810 - MER41D LTR ERV1 0 557 498 288 0 0 0 chr6 12527746 12527778 -176751776 + (CA)n Simple_repeat Simple_repeat 2 33 0 325 238 12 12 chr6 12527778 12527862 -176751692 - L1MC4 LINE L1 -1347 6695 6612 228 188 0 43 chr6 12527879 12527948 -176751606 - L1MC4 LINE L1 -1340 6702 6637 317 229 14 0 chr6 12528721 12528791 -176750763 - Charlie7 DNA MER1_type -17 2595 2525 373 199 12 149 chr6 12529236 12529306 -176750248 - MER5A DNA MER1_type -1 188 151 1627 172 12 53 chr6 12529306 12529625 -176749929 + AluJo SINE Alu 1 306 -6 373 199 12 149 chr6 12529625 12529715 -176749839 - MER5A DNA MER1_type -38 151 50 3194 108 69 54 chr6 12531210 12531801 -176747753 + MER4A LTR ERV1 1 600 0 446 274 8 8 chr6 12534165 12534289 -176745265 + MIR SINE MIR 29 152 -110 2317 154 65 0 chr6 12534414 12534816 -176744738 + MSTA LTR MaLR 1 428 0 4547 187 23 14 chr6 12534982 12535098 -176744456 + L1MB5 LINE L1 5169 5282 -892 2339 84 7 10 chr6 12535098 12535391 -176744163 + AluSc SINE Alu 1 294 -15 378 0 0 0 chr6 12535391 12535433 -176744121 + (CA)n Simple_repeat Simple_repeat 1 42 0 2339 84 7 10 chr6 12535433 12535449 -176744105 + AluSc SINE Alu 294 309 0 4547 187 23 14 chr6 12535449 12535462 -176744092 + L1MB5 LINE L1 5282 5293 -881 252 0 0 0 chr6 12535462 12535490 -176744064 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4547 187 23 14 chr6 12535490 12536351 -176743203 + L1MB5 LINE L1 5293 6165 -9 211 195 0 0 chr6 12538460 12538501 -176741053 - L2 LINE L2 -2 3311 3271 26 30 0 0 chr6 12538658 12538691 -176740863 + AT_rich Low_complexity Low_complexity 1 33 0 240 262 16 0 chr6 12540302 12540363 -176739191 - MER5A DNA MER1_type 0 189 128 232 269 201 13 chr6 12540464 12540613 -176738941 + MIR SINE MIR 36 212 -50 2486 65 0 10 chr6 12543196 12543503 -176736051 - AluSp SINE Alu -9 304 1 28 0 0 0 chr6 12543905 12543933 -176735621 + AT_rich Low_complexity Low_complexity 1 28 0 886 322 65 28 chr6 12545253 12545455 -176734099 - ERVL LTR ERVL -2422 3342 3149 1922 153 20 0 chr6 12545455 12545755 -176733799 - AluSx SINE Alu -4 308 3 886 322 65 28 chr6 12545755 12545984 -176733570 - ERVL LTR ERVL -2615 3149 2895 516 221 92 46 chr6 12546004 12546199 -176733355 + MLT1I LTR MaLR 206 409 0 404 270 51 15 chr6 12546508 12546645 -176732909 + MLT1L LTR MaLR 135 276 -339 22 0 0 0 chr6 12599983 12600005 -176679549 + AT_rich Low_complexity Low_complexity 1 22 0 388 311 17 0 chr6 12600174 12600293 -176679261 + LTR16B LTR ERVL 104 224 -240 * 971 153 18 20 chr6 12600272 12600545 -176679009 + MER2 DNA MER2_type 23 345 0 203 128 77 0 chr6 12600769 12600808 -176678746 + L2 LINE L2 2780 2821 -493 281 365 0 9 chr6 12601039 12601146 -176678408 + MIR SINE MIR 71 176 -86 245 302 198 0 chr6 12601148 12601244 -176678310 - L2 LINE L2 -2 3311 3197 291 276 16 87 chr6 12601437 12601622 -176677932 + L2 LINE L2 1745 1916 -1398 1073 138 147 22 chr6 12601626 12601816 -176677738 - MLT1B LTR MaLR 0 390 225 2098 98 4 0 chr6 12601816 12602092 -176677462 + AluSg SINE Alu 29 305 -5 1073 138 147 22 chr6 12602092 12602172 -176677382 - MLT1B LTR MaLR -165 225 1 180 387 86 39 chr6 12602194 12602450 -176677104 + L2 LINE L2 1941 2208 -1106 905 186 30 30 chr6 12603028 12603195 -176676359 + L1PB4 LINE L1 5990 6156 0 4106 131 20 30 chr6 12603669 12603917 -176675637 - L1MA4 LINE L1 -5 6295 6046 231 36 0 0 chr6 12603917 12603945 -176675609 + (TA)n Simple_repeat Simple_repeat 2 29 0 4106 131 20 30 chr6 12603945 12604303 -176675251 - L1MA4 LINE L1 -254 6046 5694 1502 155 7 81 chr6 12604303 12604613 -176674941 + AluJo SINE Alu 14 300 -12 4106 131 20 30 chr6 12604613 12604701 -176674853 - L1MA4 LINE L1 -606 5694 5607 1914 210 87 0 chr6 12604701 12605186 -176674368 - L1M2b LINE L1 -6681 528 2 866 174 0 0 chr6 12605340 12605472 -176674082 + FLAM_C SINE Alu 1 132 -1 189 0 0 0 chr6 12606826 12606847 -176672707 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 301 254 0 0 chr6 12607008 12607071 -176672483 - L2 LINE L2 -1 3271 3209 180 189 27 0 chr6 12607225 12607262 -176672292 - MIR SINE MIR -147 115 78 315 273 91 10 chr6 12607973 12608072 -176671482 - L2 LINE L2 -19 3253 3147 1020 119 150 10 chr6 12608636 12608829 -176670725 - MSTB1 LTR MaLR -23 409 190 3992 122 72 26 chr6 12608918 12609658 -176669896 - LTR1 LTR ERV1 0 785 12 206 292 0 0 chr6 12610191 12610239 -176669315 - L2 LINE L2 -11 3261 3214 2398 95 0 0 chr6 12610794 12611090 -176668464 - AluSc SINE Alu -13 296 1 2211 151 33 15 chr6 12611283 12611674 -176667880 - MSTB LTR MaLR -20 406 9 605 301 62 10 chr6 12613211 12613404 -176666150 + MIR3 SINE MIR 2 204 -4 302 321 36 27 chr6 12613942 12614054 -176665500 - MIR SINE MIR -77 131 19 186 71 0 0 chr6 12614067 12614095 -176665459 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1996 128 0 4 chr6 12614098 12614379 -176665175 - AluSx SINE Alu -32 280 1 32918 108 11 57 chr6 12614489 12620939 -176658615 + L1PA7 LINE L1 12 6154 0 346 297 27 0 chr6 12621084 12621195 -176658359 + L2 LINE L2 3198 3311 -2 2099 140 68 3 chr6 12622719 12623055 -176656499 - MER46B DNA MER2_type 0 236 4 2758 116 6 3 chr6 12624660 12625023 -176654531 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 12625171 12625192 -176654362 + AT_rich Low_complexity Low_complexity 1 21 0 506 312 48 48 chr6 12625727 12625916 -176653638 + MIR3 SINE MIR 20 208 0 410 362 99 18 chr6 12626533 12626867 -176652687 + L2 LINE L2 2397 2757 -557 234 307 80 0 chr6 12627484 12627572 -176651982 + L2 LINE L2 3214 3308 -5 180 404 10 0 chr6 12627917 12628016 -176651538 + L3 LINE CR1 363 462 -1115 709 319 181 33 chr6 12628070 12628789 -176650765 + L3 LINE CR1 557 1381 -196 1074 238 91 81 chr6 12628930 12629447 -176650107 + MLT1H LTR MaLR 13 534 -15 402 188 0 0 chr6 12631002 12631103 -176648451 + (TA)n Simple_repeat Simple_repeat 1 101 0 1064 164 123 0 chr6 12632051 12632246 -176647308 + MER20 DNA MER1_type 1 219 0 369 0 0 0 chr6 12632797 12632838 -176646716 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 238 155 0 chr6 12633252 12633336 -176646218 + MIR SINE MIR 85 181 -81 627 288 28 43 chr6 12633422 12633748 -176645806 + HAL1 LINE L1 1404 1724 -783 346 231 64 89 chr6 12633968 12634171 -176645383 + HAL1b LINE L1 714 911 -437 304 273 103 26 chr6 12634239 12634433 -176645121 + L1MC4a LINE L1 4123 4331 -1815 229 330 38 0 chr6 12634562 12634668 -176644886 + L1MC4a LINE L1 4501 4610 -1536 1282 283 105 46 chr6 12634678 12635931 -176643623 + L1MC4a LINE L1 4691 5445 -743 3436 151 20 10 chr6 12635982 12636571 -176642983 + L1MB4 LINE L1 5586 6180 0 473 288 142 26 chr6 12637225 12637458 -176642096 - L3 LINE CR1 -107 1470 1211 1582 229 73 46 chr6 12637684 12638224 -176641330 + MLT1F1 LTR MaLR 1 564 -3 1886 149 0 0 chr6 12638363 12638631 -176640923 + AluSx SINE Alu 29 296 -16 2317 104 0 13 chr6 12639354 12639670 -176639884 + AluSx SINE Alu 1 312 0 954 189 0 6 chr6 12640294 12640458 -176639096 + FRAM SINE Alu 2 164 -2 22 0 0 0 chr6 12640716 12640738 -176638816 + AT_rich Low_complexity Low_complexity 1 22 0 4973 166 30 9 chr6 12640896 12641856 -176637698 - L1MB2 LINE L1 -40 6131 5158 330 169 0 0 chr6 12641853 12641912 -176637642 + L1MB2 LINE L1 5088 5146 -1000 * 5642 40 0 9 chr6 12642136 12642781 -176636773 + L1PA5 LINE L1 5516 6154 0 609 175 53 0 chr6 12643225 12643339 -176636215 - Zaphod DNA AcHobo 0 4031 3912 1472 251 9 0 chr6 12643340 12643659 -176635895 - MER82 DNA MER2_type 0 653 332 * 3594 127 5 2 chr6 12643658 12644167 -176635387 + MER1A DNA MER1_type 17 529 0 1287 214 109 3 chr6 12644174 12644468 -176635086 - MER82 DNA MER2_type -328 325 1 1267 186 33 60 chr6 12644468 12644800 -176634754 - Zaphod DNA AcHobo -119 3912 3590 2503 224 64 58 chr6 12644795 12645356 -176634198 - Zaphod DNA AcHobo -3045 986 417 2175 117 0 0 chr6 12645356 12645646 -176633908 + AluSx SINE Alu 1 290 -22 2503 224 64 58 chr6 12645646 12645938 -176633616 - Zaphod DNA AcHobo -3614 417 128 601 223 205 5 chr6 12646483 12646698 -176632856 - MIR SINE MIR 0 262 5 2464 63 0 13 chr6 12646919 12647221 -176632333 - AluY SINE Alu -13 298 1 251 236 45 34 chr6 12647368 12647457 -176632097 - MIR SINE MIR -138 124 35 2443 111 22 33 chr6 12649066 12649434 -176630120 - THE1B LTR MaLR 0 364 1 570 128 0 0 chr6 12649488 12649582 -176629972 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 21 57 0 0 chr6 12649698 12649733 -176629821 + AT_rich Low_complexity Low_complexity 1 35 0 229 164 27 0 chr6 12650276 12650349 -176629205 + (TA)n Simple_repeat Simple_repeat 1 75 0 23 101 0 0 chr6 12650731 12650810 -176628744 + AT_rich Low_complexity Low_complexity 1 79 0 725 219 112 50 chr6 12651085 12651423 -176628131 - HAL1 LINE L1 -163 2344 1986 443 269 36 36 chr6 12651448 12651615 -176627939 - L2 LINE L2 -1 3312 3146 540 214 0 0 chr6 12651839 12651942 -176627612 + FLAM_C SINE Alu 40 142 -1 210 296 16 64 chr6 12651957 12652082 -176627472 - L2 LINE L2 -338 2976 2858 809 140 0 28 chr6 12653849 12654027 -176625527 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 930 248 36 0 chr6 12655371 12655649 -176623905 - L1ME3A LINE L1 -5 6165 5878 258 32 0 0 chr6 12656889 12656920 -176622634 + (TG)n Simple_repeat Simple_repeat 1 31 0 364 341 34 11 chr6 12657545 12657717 -176621837 - L2 LINE L2 -564 2750 2572 2381 101 22 27 chr6 12657717 12658083 -176621471 - THE1B LTR MaLR 0 364 1 607 168 0 132 chr6 12658139 12658329 -176621225 - MER3 DNA MER1_type -3 206 42 696 274 39 55 chr6 12658718 12659025 -176620529 - LTR16B LTR ERVL 0 464 163 1801 141 25 91 chr6 12659031 12659258 -176620296 + THE1C LTR MaLR 5 196 -179 12597 51 0 0 chr6 12659258 12661616 -176617938 + L1PA6 LINE L1 3793 6153 -1 1801 141 25 91 chr6 12661616 12661785 -176617769 + THE1C LTR MaLR 196 375 0 411 270 22 7 chr6 12661796 12661933 -176617621 - LTR16B LTR ERVL -323 141 3 28 91 0 0 chr6 12661978 12662055 -176617499 + AT_rich Low_complexity Low_complexity 1 77 0 9779 213 57 23 chr6 12662171 12665208 -176614346 + L1MDa LINE L1 14 3171 -3369 2454 220 20 2 chr6 12665208 12665718 -176613836 + LTR53 LTR ERVL 1 519 0 9779 213 57 23 chr6 12665718 12665878 -176613676 + L1MDa LINE L1 3171 3324 -3216 2380 100 0 0 chr6 12665996 12666305 -176613249 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 12666817 12666846 -176612708 + AT_rich Low_complexity Low_complexity 1 29 0 269 281 25 0 chr6 12667052 12667173 -176612381 + (TA)n Simple_repeat Simple_repeat 1 124 0 411 262 140 26 chr6 12667999 12668228 -176611326 + L1ME4a LINE L1 5852 6106 -15 480 283 68 11 chr6 12668657 12668837 -176610717 + MIR SINE MIR 7 189 -68 426 310 134 9 chr6 12668979 12669211 -176610343 - MLT1L LTR MaLR -6 609 349 2882 200 19 23 chr6 12669358 12670007 -176609547 - L1MB8 LINE L1 0 6178 5533 823 163 20 48 chr6 12670014 12670265 -176609289 - L1M4c LINE L1 -3425 3532 3182 370 197 40 0 chr6 12670266 12670342 -176609212 + Tigger5 DNA MER2_type 1 79 -2244 336 231 0 0 chr6 12670345 12670410 -176609144 - Tigger5 DNA MER2_type -7 2316 2252 400 169 0 0 chr6 12670414 12670479 -176609075 + Tigger5 DNA MER2_type 2259 2323 0 707 231 79 43 chr6 12670479 12671011 -176608543 - L1M4c LINE L1 -3775 3182 2631 3585 227 87 18 chr6 12671028 12672049 -176607505 - L1M4c LINE L1 -5187 1672 581 10328 200 48 27 chr6 12672052 12673017 -176606537 - L1MC1 LINE L1 -192 6421 5478 2418 50 7 10 chr6 12673017 12673320 -176606234 - AluY SINE Alu -9 302 1 10328 200 48 27 chr6 12673320 12676756 -176602798 - L1MC1 LINE L1 -1135 5478 2116 2098 80 11 7 chr6 12676756 12677032 -176602522 - AluSc SINE Alu -2 307 31 10328 200 48 27 chr6 12677032 12677160 -176602394 - L1MC1 LINE L1 -4497 2116 1992 373 147 0 0 chr6 12677160 12677228 -176602326 - L1PB4 LINE L1 -3 6153 6086 10328 200 48 27 chr6 12677228 12678959 -176600595 - L1MC1 LINE L1 -4621 1992 27 1197 295 45 65 chr6 12678971 12680348 -176599206 - L1MEc LINE L1 -4796 1600 251 462 305 40 11 chr6 12680368 12680542 -176599012 - MLT1J LTR MaLR -326 185 7 2777 7 0 0 chr6 12680812 12681112 -176598442 + AluYa5 SINE Alu 1 300 -11 1417 241 21 48 chr6 12681312 12681786 -176597768 + L1ME2 LINE L1 5676 6136 -28 332 311 66 20 chr6 12681844 12682040 -176597514 + L1MC4 LINE L1 7836 8040 -2 6261 94 5 0 chr6 12682357 12683313 -176596241 - L1PA14 LINE L1 0 6161 5213 878 190 22 0 chr6 12683313 12683492 -176596062 - L1PA14 LINE L1 -1516 4630 4448 5760 39 3 0 chr6 12684283 12684980 -176594574 - L1PA5 LINE L1 0 6154 5456 407 271 107 77 chr6 12686115 12686594 -176592960 + MLT1K LTR MaLR 66 558 -30 755 160 0 0 chr6 12686926 12687045 -176592509 - AluJb SINE Alu 0 312 194 436 320 23 6 chr6 12687142 12687317 -176592237 + MER5A DNA MER1_type 6 183 -6 339 330 125 0 chr6 12687594 12687706 -176591848 + MER5B DNA MER1_type 1 126 -52 2063 135 47 84 chr6 12688054 12688295 -176591259 - Tigger2a DNA MER2_type -2274 434 216 1746 156 30 0 chr6 12688295 12688564 -176590990 + AluSx SINE Alu 6 282 -30 2063 135 47 84 chr6 12688564 12688773 -176590781 - Tigger2a DNA MER2_type -2492 216 1 2083 159 17 0 chr6 12688779 12689138 -176590416 + MER47A DNA MER2_type 1 365 -1 369 243 122 56 chr6 12689747 12689961 -176589593 + L1ME LINE L1 5521 5748 -373 2039 121 47 9 chr6 12689984 12690306 -176589248 + MER1B DNA MER1_type 1 334 -5 251 200 57 0 chr6 12690526 12690596 -176588958 + HAL1b LINE L1 1257 1330 -18 1330 173 46 0 chr6 12691633 12691870 -176587684 + Tigger7 DNA MER2_type 9 256 -477 419 102 0 0 chr6 12691870 12691929 -176587625 - MER1B DNA MER1_type 0 333 275 * 1106 107 12 6 chr6 12691928 12692096 -176587458 - MER1B DNA MER1_type -126 171 3 479 184 11 0 chr6 12692115 12692202 -176587352 + Tigger7 DNA MER2_type 2392 2479 -8 28 48 0 0 chr6 12692324 12692366 -176587188 + AT_rich Low_complexity Low_complexity 1 42 0 297 276 72 46 chr6 12692453 12692605 -176586949 + L2 LINE L2 3152 3307 -6 2184 124 0 0 chr6 12693079 12693378 -176586176 - AluSg SINE Alu -11 299 1 356 171 219 38 chr6 12693537 12693642 -176585912 - L2 LINE L2 0 3313 3190 1924 142 6 31 chr6 12693840 12694157 -176585397 - AluJb SINE Alu -3 309 1 527 225 8 0 chr6 12694508 12694637 -176584917 - LTR16C LTR ERVL 0 491 362 568 292 120 25 chr6 12694793 12695034 -176584520 + MLT1H1 LTR MaLR 32 249 -306 2282 108 0 19 chr6 12695034 12695349 -176584205 + AluSp SINE Alu 1 309 -4 568 292 120 25 chr6 12695349 12695539 -176584015 + MLT1H1 LTR MaLR 249 504 -51 475 290 27 22 chr6 12695587 12695770 -176583784 - LTR16C LTR ERVL -266 225 42 309 51 0 0 chr6 12696039 12696078 -176583476 + (TG)n Simple_repeat Simple_repeat 2 40 0 1617 102 90 71 chr6 12696970 12697324 -176582230 + MER46B DNA MER2_type 1 236 0 347 316 0 0 chr6 12697662 12697760 -176581794 + MIR SINE MIR 81 178 -84 962 181 0 12 chr6 12697930 12698101 -176581453 - FRAM SINE Alu -8 168 1 195 253 274 68 chr6 12698921 12699067 -176580487 + MIR3 SINE MIR 33 208 0 285 156 0 0 chr6 12699111 12699156 -176580398 - MER69 DNA AcHobo -4 2522 2478 606 200 38 27 chr6 12699159 12699344 -176580210 - MER53 DNA DNA 0 189 3 293 216 11 0 chr6 12699362 12699450 -176580104 - MER69 DNA AcHobo -58 2468 2380 222 37 0 0 chr6 12700754 12700781 -176578773 + (TG)n Simple_repeat Simple_repeat 1 27 0 327 333 52 20 chr6 12701911 12702306 -176577248 + L1ME3A LINE L1 5524 5936 -234 2244 99 0 13 chr6 12702371 12702674 -176576880 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr6 12702682 12702703 -176576851 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 12702775 12702806 -176576748 + AT_rich Low_complexity Low_complexity 1 31 0 188 35 35 0 chr6 12702855 12702884 -176576670 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 610 291 93 39 chr6 12702884 12703248 -176576306 + Tigger8 DNA MER2_type 273 656 -10 2199 110 7 3 chr6 12703823 12704122 -176575432 + AluSx SINE Alu 3 302 -10 188 23 47 47 chr6 12704131 12704174 -176575380 + (GAGAA)n Simple_repeat Simple_repeat 3 45 0 819 124 31 0 chr6 12704183 12704312 -176575242 + AluSg/x SINE Alu 174 306 -4 678 159 23 23 chr6 12704332 12704508 -176575046 + GA-rich Low_complexity Low_complexity 3 178 0 481 75 0 0 chr6 12706168 12706235 -176573319 + AluY SINE Alu 193 259 -52 297 0 0 0 chr6 12706502 12706535 -176573019 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 1274 156 135 8 chr6 12706540 12706677 -176572877 - AluJo SINE Alu -33 279 161 204 40 0 0 chr6 12706677 12706702 -176572852 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1274 156 135 8 chr6 12706702 12706808 -176572746 - AluJo SINE Alu -151 161 5 261 57 0 0 chr6 12707028 12707063 -176572491 + (CA)n Simple_repeat Simple_repeat 2 36 0 285 75 0 0 chr6 12707063 12707103 -176572451 + (GA)n Simple_repeat Simple_repeat 1 40 0 2206 102 10 0 chr6 12707497 12707792 -176571762 + AluSx SINE Alu 1 298 -14 1502 147 25 159 chr6 12707963 12708359 -176571195 + Charlie1b DNA MER1_type 1 297 -2464 2104 115 24 0 chr6 12708359 12708646 -176570908 + AluSx SINE Alu 1 294 -18 1502 147 25 159 chr6 12708646 12708847 -176570707 + Charlie1b DNA MER1_type 297 523 0 335 250 50 71 chr6 12709260 12709400 -176570154 + MER5A DNA MER1_type 35 171 -18 719 78 78 37 chr6 12709832 12710051 -176569503 - L1MA1 LINE L1 0 6302 6019 7525 125 130 58 chr6 12710436 12712017 -176567537 + pTR5 LTR ERV1 743 2438 0 2224 125 0 0 chr6 12713290 12713595 -176565959 + AluSx SINE Alu 1 305 -7 23 78 0 0 chr6 12713664 12713715 -176565839 + AT_rich Low_complexity Low_complexity 1 51 0 678 167 0 0 chr6 12714265 12714397 -176565157 + (CCCTA)n Simple_repeat Simple_repeat 2 133 0 1900 102 0 0 chr6 12714421 12714666 -176564888 - AluSg SINE Alu -26 284 40 270 318 39 16 chr6 12715230 12715359 -176564195 + MIR SINE MIR 85 216 -46 246 32 0 0 chr6 12716552 12716583 -176562971 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr6 12716619 12716643 -176562911 + (A)n Simple_repeat Simple_repeat 1 24 0 465 83 0 0 chr6 12716678 12716738 -176562816 + Alu SINE Alu 2 61 -257 1539 87 10 0 chr6 12716738 12716934 -176562620 + AluSg/x SINE Alu 96 293 -17 589 312 49 40 chr6 12717427 12717754 -176561800 + MLT1I LTR MaLR 72 401 -8 767 309 23 9 chr6 12717852 12718072 -176561482 - MER58A DNA MER1_type 0 224 2 2174 109 0 3 chr6 12718106 12718399 -176561155 + AluSq SINE Alu 1 292 -21 298 180 66 16 chr6 12718425 12718486 -176561068 - MLT1C LTR MaLR -5 462 399 284 101 47 39 chr6 12718492 12718621 -176560933 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 1287 210 96 18 chr6 12718654 12718988 -176560566 - MLT1C LTR MaLR -63 404 45 1625 164 7 7 chr6 12719110 12719384 -176560170 - L1PB3 LINE L1 0 6154 5881 2206 101 10 3 chr6 12720478 12720774 -176558780 + AluSq SINE Alu 1 298 -15 358 280 23 30 chr6 12720790 12720922 -176558632 - MLT1I LTR MaLR -33 376 246 317 189 11 105 chr6 12720994 12721089 -176558465 - MLT1J LTR MaLR -325 186 101 21 57 0 0 chr6 12722155 12722190 -176557364 + AT_rich Low_complexity Low_complexity 1 35 0 365 314 70 32 chr6 12722292 12722532 -176557022 - L1ME4a LINE L1 -221 5900 5642 1953 142 3 31 chr6 12722532 12722849 -176556705 + AluJo SINE Alu 1 308 -4 365 314 70 32 chr6 12722849 12722952 -176556602 - L1ME4a LINE L1 -479 5642 5544 27 49 0 0 chr6 12723098 12723139 -176556415 + AT_rich Low_complexity Low_complexity 1 41 0 714 287 124 6 chr6 12723287 12723618 -176555936 - L1ME4a LINE L1 -193 5928 5559 32 26 0 0 chr6 12723699 12723738 -176555816 + AT_rich Low_complexity Low_complexity 1 39 0 375 262 119 57 chr6 12723906 12724150 -176555404 - HAL1b LINE L1 -684 664 406 877 259 50 61 chr6 12724157 12724566 -176554988 + MLT2B2 LTR ERVL 1 364 -50 336 24 0 0 chr6 12724568 12724609 -176554945 + (CA)n Simple_repeat Simple_repeat 2 42 0 1602 157 5 129 chr6 12725064 12725458 -176554096 + MER7A DNA MER2_type 4 346 0 3251 133 4 24 chr6 12725589 12726132 -176553422 + L1MA9 LINE L1 5781 6312 0 291 211 84 0 chr6 12726478 12726549 -176553005 - L2 LINE L2 -1 3312 3236 2081 179 19 16 chr6 12727225 12727589 -176551965 + MLT1A1 LTR MaLR 1 365 0 1533 225 17 28 chr6 12728486 12728846 -176550708 - MLT1A2 LTR MaLR 0 374 19 223 28 56 0 chr6 12729639 12729675 -176549879 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 2127 101 0 14 chr6 12730455 12730752 -176548802 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr6 12731673 12731703 -176547851 + AT_rich Low_complexity Low_complexity 1 30 0 228 368 0 0 chr6 12731750 12731818 -176547736 + MIR3 SINE MIR 104 171 -37 921 208 20 9 chr6 12731845 12732113 -176547441 + L1MC4a LINE L1 6422 6618 -1190 308 275 0 22 chr6 12732114 12732205 -176547349 + L1MC4 LINE L1 6615 6703 -1339 237 250 0 0 chr6 12732205 12732265 -176547289 + (TA)n Simple_repeat Simple_repeat 2 61 0 4231 239 73 14 chr6 12732281 12733410 -176546144 + L1MC4a LINE L1 6605 7800 -8 208 301 0 55 chr6 12733465 12733538 -176546016 - L2 LINE L2 -3 3310 3242 432 0 0 0 chr6 12733542 12733590 -176545964 + (CA)n Simple_repeat Simple_repeat 2 49 0 511 305 126 40 chr6 12733706 12734080 -176545474 + L1ME4a LINE L1 4547 4952 -1194 4649 133 10 10 chr6 12734240 12734942 -176544612 - L1PA16 LINE L1 0 6166 5465 474 271 173 29 chr6 12735168 12735742 -176543812 + L1ME4a LINE L1 5304 5973 -148 336 312 128 7 chr6 12736542 12736824 -176542730 + L2 LINE L2 2422 2737 -577 642 282 129 58 chr6 12736872 12737305 -176542249 + L2 LINE L2 2849 3312 -1 890 296 97 42 chr6 12737754 12738075 -176541479 + L2 LINE L2 2570 2872 -441 2659 174 48 26 chr6 12738075 12738622 -176540932 + MER89 LTR ERV1 1 559 0 890 296 97 42 chr6 12738622 12739000 -176540554 + L2 LINE L2 2872 3311 -2 1937 201 10 48 chr6 12739472 12739788 -176539766 - MLT2C1 LTR ERVL 0 397 99 2173 95 0 24 chr6 12739788 12740082 -176539472 + AluSq SINE Alu 1 287 -26 1937 201 10 48 chr6 12740082 12740178 -176539376 - MLT2C1 LTR ERVL -298 99 1 329 294 139 16 chr6 12740205 12740527 -176539027 + L2 LINE L2 2695 3044 -269 388 127 16 0 chr6 12740649 12740712 -176538842 + MER20 DNA MER1_type 3 66 -153 2559 169 7 18 chr6 12740743 12741198 -176538356 - L1MC1 LINE L1 -3 6330 5881 2860 169 88 2 chr6 12741198 12741392 -176538162 + MLT2B3 LTR ERVL 2 178 -376 219 36 0 0 chr6 12741392 12741420 -176538134 + (TC)n Simple_repeat Simple_repeat 1 28 0 2860 169 88 2 chr6 12741420 12741716 -176537838 + MLT2B3 LTR ERVL 178 534 -20 249 176 14 54 chr6 12741716 12741790 -176537764 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 584 84 11 73 chr6 12741792 12741970 -176537584 + (TCTA)n Simple_repeat Simple_repeat 3 169 0 1493 138 32 0 chr6 12742025 12742271 -176537283 - L1MC1 LINE L1 -447 5886 5633 780 147 66 0 chr6 12742271 12742407 -176537147 + MSTB LTR MaLR 1 145 -281 781 250 246 13 chr6 12742407 12742560 -176536994 - L2 LINE L2 -1283 2031 1915 1690 188 140 11 chr6 12742560 12742911 -176536643 - MSTD LTR MaLR 0 396 1 781 250 246 13 chr6 12742911 12743205 -176536349 - L2 LINE L2 -1399 1915 1480 1478 243 99 57 chr6 12743929 12744476 -176535078 + MLT1E3 LTR MaLR 3 572 -52 343 46 82 8 chr6 12744504 12744560 -176534994 - MLT2A2 LTR ERVL 0 453 402 342 214 98 45 chr6 12744602 12744714 -176534840 + MLT1E1 LTR MaLR 185 302 -352 204 0 0 77 chr6 12744728 12744767 -176534787 + (TA)n Simple_repeat Simple_repeat 2 37 0 1255 95 0 6 chr6 12744767 12744935 -176534619 - MLT2A1 LTR ERVL -58 386 220 2259 108 3 7 chr6 12745234 12745539 -176534015 - AluSq SINE Alu -9 304 1 340 307 64 36 chr6 12746211 12746351 -176533203 - MIR SINE MIR -72 190 47 249 373 0 0 chr6 12746629 12746696 -176532858 - L2 LINE L2 -21 3251 3185 2486 67 0 3 chr6 12747290 12747589 -176531965 + AluSp SINE Alu 5 302 -11 2156 114 0 0 chr6 12748169 12748449 -176531105 - AluSx SINE Alu -32 280 1 186 43 0 0 chr6 12748600 12748623 -176530931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 991 180 85 2 chr6 12748624 12748814 -176530740 - MER21B LTR ERV1 -355 576 311 1820 151 18 0 chr6 12749111 12749413 -176530141 - AluSx SINE Alu 0 307 1 1563 162 41 4 chr6 12749444 12749715 -176529839 - L1MB2 LINE L1 -3 6168 5888 779 291 13 4 chr6 12749830 12750057 -176529497 - MIR SINE MIR -32 230 2 230 257 50 86 chr6 12752582 12752722 -176526832 - L2 LINE L2 -832 2482 2348 2108 137 0 16 chr6 12752856 12753171 -176526383 + AluSx SINE Alu 1 310 -2 225 65 0 0 chr6 12753805 12753836 -176525718 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2224 132 0 3 chr6 12755114 12755417 -176524137 - AluSx SINE Alu -10 302 1 219 146 0 0 chr6 12755855 12755896 -176523658 + (TG)n Simple_repeat Simple_repeat 2 42 0 954 293 97 0 chr6 12756038 12756369 -176523185 + MER69 DNA AcHobo 26 388 -2138 403 186 8 108 chr6 12756406 12756535 -176523019 + MER69 DNA AcHobo 579 694 -532 2303 233 89 12 chr6 12756565 12757373 -176522181 + MER69 DNA AcHobo 1656 2525 -1 1546 202 50 3 chr6 12757443 12757740 -176521814 + AluJo SINE Alu 1 311 -1 472 317 130 25 chr6 12757741 12758173 -176521381 - L1 LINE L1 -1137 5009 4533 253 189 140 35 chr6 12758771 12758914 -176520640 - L1 LINE L1 -2400 3746 3589 2539 220 73 24 chr6 12759156 12760087 -176519467 - Charlie7 DNA MER1_type -32 2580 1604 1849 245 84 24 chr6 12760168 12761016 -176518538 - Charlie2a DNA MER1_type -46 2816 1918 381 269 39 32 chr6 12761568 12761724 -176517830 + L1ME3A LINE L1 6005 6161 -9 2896 227 92 70 chr6 12761727 12763233 -176516321 - Charlie2a DNA MER1_type -1106 1756 218 1356 105 0 0 chr6 12763691 12763872 -176515682 - AluSg/x SINE Alu -2 310 130 21 0 0 0 chr6 12763880 12763901 -176515653 + AT_rich Low_complexity Low_complexity 1 21 0 358 277 84 60 chr6 12764206 12764321 -176515233 - L1 LINE L1 -2794 3352 3241 2375 87 3 0 chr6 12764321 12764621 -176514933 - AluSc SINE Alu -8 301 1 358 277 84 60 chr6 12764621 12764790 -176514764 - L1 LINE L1 -2905 3241 3061 930 106 75 58 chr6 12764817 12765043 -176514511 - L1MA7 LINE L1 -9 6282 6053 1291 131 0 0 chr6 12765053 12765252 -176514302 - MER41A LTR ERV1 -88 466 268 358 148 0 0 chr6 12765252 12765313 -176514241 - L1MA9 LINE L1 -244 6068 6008 1268 221 74 14 chr6 12766921 12767288 -176512266 - L1MB7 LINE L1 0 6184 5796 189 0 0 0 chr6 12767570 12767591 -176511963 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2178 109 0 0 chr6 12767606 12767889 -176511665 - AluSq SINE Alu -30 283 1 313 304 52 0 chr6 12768002 12768117 -176511437 + MIR3 SINE MIR 75 195 -13 22 35 0 0 chr6 12768463 12768492 -176511062 + AT_rich Low_complexity Low_complexity 1 29 0 695 180 7 50 chr6 12768833 12768972 -176510582 - FLAM_A SINE Alu 0 133 1 1593 186 10 20 chr6 12769078 12769374 -176510180 + AluJo SINE Alu 1 293 -19 26 64 0 0 chr6 12769381 12769428 -176510126 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr6 12770146 12770188 -176509366 + AT_rich Low_complexity Low_complexity 1 42 0 2727 264 116 56 chr6 12770368 12771078 -176508476 + HAL1 LINE L1 10 676 -1831 2073 124 10 0 chr6 12771078 12771369 -176508185 - AluSx SINE Alu -18 294 1 2727 264 116 56 chr6 12771369 12771943 -176507611 + HAL1 LINE L1 676 1214 -1293 1459 106 0 49 chr6 12771943 12772169 -176507385 + AluY SINE Alu 40 254 -57 2727 264 116 56 chr6 12772169 12772731 -176506823 + HAL1 LINE L1 1214 1967 -540 4136 113 41 23 chr6 12772757 12773022 -176506532 - Tigger3(Golem) DNA MER2_type 0 3029 2770 2333 72 0 31 chr6 12773022 12773341 -176506213 - AluSg SINE Alu -1 309 1 4136 113 41 23 chr6 12773341 12773807 -176505747 - Tigger3(Golem) DNA MER2_type -259 2770 2285 578 204 0 0 chr6 12773807 12773915 -176505639 - Tigger3(Golem) DNA MER2_type -2921 108 1 688 292 71 55 chr6 12773915 12774408 -176505146 + HAL1 LINE L1 2007 2507 0 445 272 61 0 chr6 12774920 12775034 -176504520 + L2 LINE L2 3193 3313 0 231 287 52 59 chr6 12775324 12775460 -176504094 + MIR SINE MIR 32 166 -96 191 286 71 0 chr6 12775924 12775994 -176503560 - MIR3 SINE MIR -27 181 107 1982 131 34 7 chr6 12776312 12776610 -176502944 - AluJb SINE Alu -6 306 1 262 125 62 0 chr6 12777920 12777968 -176501586 - MIR SINE MIR -91 171 121 270 81 0 0 chr6 12779151 12779188 -176500366 + (CA)n Simple_repeat Simple_repeat 2 38 0 375 192 8 17 chr6 12780071 12780191 -176499363 + (TA)n Simple_repeat Simple_repeat 1 119 0 910 118 82 165 chr6 12780217 12780320 -176499234 - MER44D DNA MER2_type -1908 583 473 2174 96 48 0 chr6 12780320 12780611 -176498943 - AluSx SINE Alu -7 305 1 910 118 82 165 chr6 12780611 12780822 -176498732 - MER44D DNA MER2_type -2018 473 25 1161 179 26 15 chr6 12781225 12781498 -176498056 - L1MD3 LINE L1 0 7995 7720 742 299 61 0 chr6 12781617 12781831 -176497723 - MIR SINE MIR -28 234 8 1971 156 3 7 chr6 12782099 12782407 -176497147 - AluJb SINE Alu -4 308 2 198 167 0 0 chr6 12782441 12782477 -176497077 + CT-rich Low_complexity Low_complexity 1 36 0 225 311 131 16 chr6 12782643 12782765 -176496789 + MIR3 SINE MIR 15 150 -58 498 239 128 51 chr6 12782912 12783146 -176496408 - L2 LINE L2 -3 3310 3059 1192 177 39 84 chr6 12783483 12783817 -176495737 + MLT1B LTR MaLR 1 319 -71 380 314 238 0 chr6 12784375 12784547 -176495007 + MIR SINE MIR 48 260 -2 2349 65 3 0 chr6 12784848 12785138 -176494416 - AluY SINE Alu -20 291 1 206 210 43 43 chr6 12786762 12786900 -176492654 + (CCGGG)n Simple_repeat Simple_repeat 5 142 0 195 100 0 0 chr6 12788884 12788914 -176490640 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr6 12789096 12789124 -176490430 + GC_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr6 12789405 12789432 -176490122 + (TG)n Simple_repeat Simple_repeat 1 27 0 656 220 115 11 chr6 12790766 12790957 -176488597 - MIR SINE MIR -18 244 34 323 258 205 0 chr6 12791062 12791213 -176488341 + MIR SINE MIR 71 252 -10 556 268 131 46 chr6 12791495 12791824 -176487730 - MLT1I LTR MaLR -6 403 47 304 253 13 13 chr6 12792519 12792594 -176486960 + L2 LINE L2 3239 3313 0 225 246 72 0 chr6 12793702 12793771 -176485783 + L2 LINE L2 3240 3313 0 3361 122 98 56 chr6 12793963 12795169 -176484385 - pTR5 LTR ERV1 -143 2295 743 2237 94 26 10 chr6 12797606 12797913 -176481641 - AluSx SINE Alu 0 312 1 2216 102 3 0 chr6 12798399 12798692 -176480862 - AluSq SINE Alu -19 294 1 2255 102 0 3 chr6 12798904 12799197 -176480357 - AluSg SINE Alu -18 292 1 294 294 199 0 chr6 12799257 12799393 -176480161 + MIR SINE MIR 83 245 -17 24 32 0 0 chr6 12800976 12801007 -176478547 + AT_rich Low_complexity Low_complexity 1 31 0 343 173 77 77 chr6 12801573 12801677 -176477877 - MIR3 SINE MIR -7 201 98 679 217 51 0 chr6 12801725 12801882 -176477672 - MIR SINE MIR -34 228 64 2190 127 0 0 chr6 12802485 12802785 -176476769 + AluSq SINE Alu 1 300 -13 908 217 98 0 chr6 12803685 12803888 -176475666 + MER58A DNA MER1_type 2 224 0 1486 245 47 14 chr6 12805419 12805904 -176473650 - L1MB8 LINE L1 0 6178 5678 2065 230 93 30 chr6 12805945 12807740 -176471814 - L1M4 LINE L1 -3783 3174 1206 322 302 77 30 chr6 12808348 12808583 -176470971 - L1M4 LINE L1 -6296 559 314 2441 60 7 13 chr6 12808867 12809169 -176470385 - AluY SINE Alu -11 300 1 525 268 138 17 chr6 12809199 12809438 -176470116 + MIR SINE MIR 1 256 -6 245 130 0 43 chr6 12809748 12809794 -176469760 + Tigger5 DNA MER2_type 2 45 -2278 * 1535 124 35 4 chr6 12809792 12810050 -176469504 + Tigger5 DNA MER2_type 2054 2319 -4 243 0 0 0 chr6 12810050 12810077 -176469477 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 12810471 12810499 -176469055 + AT_rich Low_complexity Low_complexity 1 28 0 276 263 26 26 chr6 12812878 12812992 -176466562 + L1ME LINE L1 5637 5750 -371 2103 108 13 25 chr6 12813349 12813664 -176465890 + AluSx SINE Alu 1 311 -1 192 317 17 0 chr6 12813665 12813725 -176465829 - L2 LINE L2 -226 3046 2986 1340 202 19 54 chr6 12814425 12814742 -176464812 - AluJo SINE Alu -6 306 1 662 222 80 9 chr6 12814887 12815112 -176464442 + Charlie4a DNA MER1_type 264 504 -4 2189 86 0 4 chr6 12815123 12815486 -176464068 + AluSc SINE Alu 5 366 0 285 327 133 18 chr6 12815561 12815842 -176463712 + MIR SINE MIR 1 253 -9 2106 131 118 5 chr6 12817395 12817776 -176461778 - MSTA LTR MaLR 0 428 5 2515 55 0 10 chr6 12817865 12818172 -176461382 + AluY SINE Alu 1 304 -7 2001 132 14 0 chr6 12818390 12818686 -176460868 - AluY SINE Alu -11 300 1 2681 23 0 7 chr6 12818800 12819108 -176460446 - AluYb8 SINE Alu -12 306 1 682 93 0 10 chr6 12819110 12819207 -176460347 - AluJb SINE Alu -14 298 203 27 0 0 0 chr6 12819248 12819275 -176460279 + AT_rich Low_complexity Low_complexity 1 27 0 287 279 91 19 chr6 12819454 12819608 -176459946 + MER104 DNA Tc2 4 168 -12 241 289 50 16 chr6 12819631 12819752 -176459802 - L1P LINE L1 -1135 5011 4887 2330 103 0 16 chr6 12820083 12820394 -176459160 - AluSx SINE Alu -6 306 1 216 146 0 49 chr6 12822247 12822288 -176457266 - MER91B DNA MER1_type -127 63 25 362 275 76 57 chr6 12823009 12823220 -176456334 - MIR SINE MIR -1 261 47 2387 84 0 7 chr6 12823226 12823522 -176456032 + AluSc SINE Alu 1 294 -15 279 0 0 0 chr6 12823573 12823604 -176455950 + (TG)n Simple_repeat Simple_repeat 2 32 0 2222 92 0 0 chr6 12823604 12823886 -176455668 - AluSg SINE Alu -28 282 1 21 0 0 0 chr6 12825225 12825246 -176454308 + AT_rich Low_complexity Low_complexity 1 21 0 181 333 43 0 chr6 12826955 12827024 -176452530 + MIR SINE MIR 117 188 -74 2516 56 0 3 chr6 12827031 12827334 -176452220 + AluY SINE Alu 1 302 -9 341 242 0 11 chr6 12827604 12827695 -176451859 - L1MC4 LINE L1 -1238 6804 6715 303 28 0 0 chr6 12827729 12827765 -176451789 + (TA)n Simple_repeat Simple_repeat 2 37 0 320 338 81 25 chr6 12827997 12828195 -176451359 - L1MC4a LINE L1 -1536 6272 6064 27 29 0 0 chr6 12828315 12828349 -176451205 + AT_rich Low_complexity Low_complexity 1 34 0 358 363 93 10 chr6 12829239 12829443 -176450111 - MIR SINE MIR -1 261 41 22 0 0 0 chr6 12829915 12829937 -176449617 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr6 12829953 12829980 -176449574 + (TG)n Simple_repeat Simple_repeat 2 28 0 301 265 99 20 chr6 12831027 12831178 -176448376 - L1ME4a LINE L1 -24 6097 5935 385 251 60 27 chr6 12831210 12831393 -176448161 - L1ME4a LINE L1 -158 5963 5775 264 338 13 0 chr6 12831710 12831787 -176447767 - L2 LINE L2 -53 3219 3142 2245 88 3 0 chr6 12831929 12832214 -176447340 + AluSc SINE Alu 10 295 -14 309 250 83 33 chr6 12833052 12833172 -176446382 - L1MC4 LINE L1 -24 8018 7893 * 464 302 130 21 chr6 12833151 12833482 -176446072 - L1M4 LINE L1 -1757 4389 4023 1324 173 0 18 chr6 12833558 12833784 -176445770 - AluJb SINE Alu -6 306 85 23 0 0 0 chr6 12834506 12834529 -176445025 + AT_rich Low_complexity Low_complexity 1 23 0 204 339 0 0 chr6 12834617 12834676 -176444878 + MIR SINE MIR 204 262 0 210 174 0 0 chr6 12835553 12835599 -176443955 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1008 107 0 21 chr6 12835673 12835813 -176443741 - AluSp/q SINE Alu -10 303 167 1155 113 0 0 chr6 12835915 12836065 -176443489 - AluSq/x SINE Alu -162 150 1 192 286 48 32 chr6 12836546 12836609 -176442945 + L2 LINE L2 3200 3263 -9 214 274 41 14 chr6 12886861 12886934 -176392620 + L2 LINE L2 2985 3059 -213 2091 245 131 22 chr6 12889023 12889847 -176389707 + L2 LINE L2 2058 2971 -343 36484 80 8 11 chr6 12889863 12896026 -176383528 + L1PA6 LINE L1 11 6154 0 698 246 76 101 chr6 12896028 12896385 -176383169 + L2 LINE L2 2962 3309 -4 2285 107 0 0 chr6 12896655 12896945 -176382609 + AluSp SINE Alu 1 290 -23 198 348 43 0 chr6 12897192 12897261 -176382293 - L3b LINE CR1 -90 1493 1422 23 33 0 0 chr6 12901267 12901297 -176378257 + AT_rich Low_complexity Low_complexity 1 30 0 994 226 14 5 chr6 12902156 12902373 -176377181 - MER58A DNA MER1_type -5 219 1 2206 90 0 27 chr6 12902387 12902688 -176376866 + AluSx SINE Alu 20 312 0 23 0 0 0 chr6 12903526 12903549 -176376005 + AT_rich Low_complexity Low_complexity 1 23 0 205 291 0 18 chr6 12903801 12903856 -176375698 + MIR SINE MIR 32 85 -177 198 0 0 0 chr6 12904066 12904088 -176375466 + (A)n Simple_repeat Simple_repeat 1 22 0 1722 110 0 0 chr6 12904360 12904587 -176374967 + AluSq SINE Alu 1 227 -86 1025 245 84 41 chr6 12904601 12905070 -176374484 - L1MC4a LINE L1 -1202 6606 6126 1498 75 4 57 chr6 12905090 12905317 -176374237 + L1PA8 LINE L1 5948 6162 -10 2423 257 70 14 chr6 12905346 12905746 -176373808 - L1MCc LINE L1 -2848 4093 3717 5919 96 43 2 chr6 12905746 12907110 -176372444 - L1PA11 LINE L1 -1 6173 4768 2423 257 70 14 chr6 12907110 12908417 -176371137 - L1MCc LINE L1 -3224 3717 2306 1298 232 81 27 chr6 12908433 12909155 -176370399 - L1MCc LINE L1 -4851 1571 815 186 263 0 0 chr6 12909681 12909738 -176369816 + (TG)n Simple_repeat Simple_repeat 2 58 0 1212 171 82 31 chr6 12911136 12911429 -176368125 - LTR56 LTR ERV1 -137 308 1 25 75 0 0 chr6 12912679 12912732 -176366822 + AT_rich Low_complexity Low_complexity 1 53 0 200 86 29 0 chr6 12918021 12918056 -176361498 + (TA)n Simple_repeat Simple_repeat 2 37 0 411 152 54 0 chr6 12918067 12918179 -176361375 + (TA)n Simple_repeat Simple_repeat 1 118 0 305 181 121 24 chr6 12918179 12918262 -176361292 + L1MC4 LINE L1 6612 6702 -1340 349 253 31 0 chr6 12918278 12918440 -176361114 + (TA)n Simple_repeat Simple_repeat 1 167 0 310 258 34 11 chr6 12918441 12918530 -176361024 - L1MC4 LINE L1 -1340 6702 6612 308 241 23 11 chr6 12918455 12918542 -176361012 + L1MC4 LINE L1 6615 6702 -1340 * 258 186 35 12 chr6 12918559 12918645 -176360909 - L1MC4 LINE L1 -1341 6701 6614 359 179 0 63 chr6 12918676 12918771 -176360783 - L1MC4 LINE L1 -1339 6703 6615 317 242 0 53 chr6 12918793 12918888 -176360666 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr6 12918888 12918911 -176360643 + AT_rich Low_complexity Low_complexity 1 23 0 1636 158 50 136 chr6 12919008 12919381 -176360173 + MER47B DNA MER2_type 1 329 -1994 2095 131 10 0 chr6 12919381 12919679 -176359875 - AluSx SINE Alu -9 303 3 1636 158 50 136 chr6 12919679 12919762 -176359792 + MER47B DNA MER2_type 329 418 0 289 318 45 23 chr6 12920305 12920354 -176359200 - L2 LINE L2 -7 3306 3260 2135 94 0 4 chr6 12920354 12920631 -176358923 + AluY SINE Alu 22 297 -14 289 318 45 23 chr6 12920631 12920713 -176358841 - L2 LINE L2 -53 3260 3172 185 333 0 18 chr6 12920970 12921027 -176358527 - MIR SINE MIR -58 150 95 184 279 74 41 chr6 12921492 12921614 -176357940 + L3 LINE CR1 740 865 -712 874 157 7 0 chr6 12921706 12921846 -176357708 - FLAM_C SINE Alu -2 141 1 193 270 29 31 chr6 12923209 12923283 -176356271 - MIR SINE MIR -100 108 46 26 30 0 0 chr6 12924799 12924832 -176354722 + AT_rich Low_complexity Low_complexity 1 33 0 192 125 0 0 chr6 12925288 12925320 -176354234 + (TTG)n Simple_repeat Simple_repeat 2 33 0 449 282 67 0 chr6 12925807 12925956 -176353598 + MIR SINE MIR 96 254 -8 208 233 0 0 chr6 12926014 12926057 -176353497 - L2 LINE L2 -3 3310 3268 2207 111 7 0 chr6 12926728 12927026 -176352528 - AluSq SINE Alu -13 300 1 1027 116 40 0 chr6 12927174 12927372 -176352182 - L1P LINE L1 -837 5309 5104 3260 86 0 7 chr6 12927372 12927825 -176351729 + L1PA14 LINE L1 5710 6159 -2 632 309 39 17 chr6 12927850 12928080 -176351474 + MIR SINE MIR 10 244 -18 21 71 0 0 chr6 12928372 12928414 -176351140 + AT_rich Low_complexity Low_complexity 1 42 0 378 323 86 23 chr6 12928485 12928788 -176350766 + L1MC4a LINE L1 5009 5330 -816 803 164 0 0 chr6 12928803 12928925 -176350629 + FLAM_C SINE Alu 3 124 -19 442 338 84 23 chr6 12928943 12929503 -176350051 + L1MC4a LINE L1 5338 5924 -246 206 73 98 0 chr6 12930325 12930366 -176349188 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 445 275 106 0 chr6 12930564 12930706 -176348848 - MIR SINE MIR -19 243 87 2348 74 0 0 chr6 12931573 12931892 -176347662 + AluY SINE Alu 1 319 0 970 106 0 144 chr6 12931892 12932068 -176347486 - AluJo/FRAM SINE Alu -24 288 138 594 103 0 0 chr6 12934469 12934556 -176344998 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 22 0 0 0 chr6 12935361 12935383 -176344171 + AT_rich Low_complexity Low_complexity 1 22 0 247 329 56 33 chr6 12935588 12935892 -176343662 + L1MC4a LINE L1 107 417 -5979 1876 229 15 23 chr6 12936071 12936590 -176342964 + L1ME LINE L1 5283 5797 -369 836 231 61 60 chr6 12936602 12937041 -176342513 + L1ME1 LINE L1 5711 6112 -54 640 256 97 65 chr6 12937116 12937714 -176341840 + L1MC4a LINE L1 707 1323 -5073 2115 157 35 39 chr6 12937726 12938088 -176341466 + MSTB1 LTR MaLR 1 362 -70 2010 140 24 0 chr6 12938088 12938380 -176341174 - AluSx SINE Alu -13 299 1 2115 157 35 39 chr6 12938380 12938449 -176341105 + MSTB1 LTR MaLR 362 430 -2 329 354 36 10 chr6 12938613 12938805 -176340749 + L1MC4a LINE L1 3781 3977 -2238 487 317 53 43 chr6 12939088 12939410 -176340144 + L1MC4a LINE L1 4452 4776 -1439 29 28 0 0 chr6 12939681 12939717 -176339837 + AT_rich Low_complexity Low_complexity 1 36 0 768 294 75 35 chr6 12939933 12940461 -176339093 + L1MC4a LINE L1 5365 5921 -1956 204 40 0 0 chr6 12940461 12940486 -176339068 + (TTGTG)n Simple_repeat Simple_repeat 3 27 0 768 294 75 35 chr6 12940486 12940558 -176338996 + L1MC4a LINE L1 5921 5989 -1888 492 300 106 51 chr6 12940799 12941343 -176338211 + L2 LINE L2 2737 3313 0 1978 148 3 13 chr6 12941802 12942112 -176337442 + AluJo SINE Alu 1 307 -5 23 54 0 0 chr6 12942119 12942156 -176337398 + AT_rich Low_complexity Low_complexity 1 37 0 429 296 86 26 chr6 12942355 12942507 -176337047 - MIR3 SINE MIR -6 202 42 837 95 107 48 chr6 12942796 12942932 -176336622 - L1MA4A LINE L1 -6 6297 6148 2162 118 137 11 chr6 12942932 12943312 -176336242 + MSTA LTR MaLR 1 428 0 837 95 107 48 chr6 12943312 12943343 -176336211 - L1MA4A LINE L1 -155 6148 6120 515 185 120 0 chr6 12943453 12943561 -176335993 + MIR SINE MIR 66 186 -76 332 157 0 39 chr6 12943561 12943638 -176335916 - Alu SINE Alu -249 51 1 595 317 52 20 chr6 12943721 12944128 -176335426 - L1ME LINE L1 -331 5790 5371 911 186 61 8 chr6 12944499 12944762 -176334792 + MER33 DNA MER1_type 26 302 -22 207 0 0 0 chr6 12944856 12944879 -176334675 + (GA)n Simple_repeat Simple_repeat 2 24 0 2322 95 0 3 chr6 12945013 12945319 -176334235 + AluSx SINE Alu 1 305 -7 494 258 32 24 chr6 12945708 12945832 -176333722 + L2 LINE L2 3188 3312 -1 423 244 122 24 chr6 12945987 12946151 -176333403 - MIR SINE MIR -25 237 58 205 306 111 37 chr6 12946183 12946291 -176333263 + L3 LINE CR1 308 423 -1154 449 317 181 5 chr6 12946450 12946671 -176332883 + L3 LINE CR1 413 672 -905 274 304 34 47 chr6 12947372 12947520 -176332034 - L2 LINE L2 -2 3311 3166 2277 97 19 10 chr6 12947770 12948079 -176331475 + AluSx SINE Alu 1 312 0 452 310 111 74 chr6 12948091 12948803 -176330751 - L2 LINE L2 -448 2866 2129 183 80 0 0 chr6 12948956 12948981 -176330573 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 676 274 62 46 chr6 12949016 12949275 -176330279 - L2 LINE L2 -90 3223 2961 710 105 105 15 chr6 12949277 12949410 -176330144 - MLT2D LTR ERVL -269 145 1 510 287 14 7 chr6 12949410 12949553 -176330001 - L2 LINE L2 -654 2660 2517 353 83 0 0 chr6 12949775 12949823 -176329731 + MSTA LTR MaLR 378 425 -3 2125 110 7 0 chr6 12949855 12950145 -176329409 - AluSp SINE Alu -12 301 10 2365 162 58 9 chr6 12950570 12951033 -176328521 + MER66B LTR ERV1 1 486 0 1893 157 3 10 chr6 12951689 12952008 -176327546 + AluJb SINE Alu 1 312 0 1760 135 69 10 chr6 12952644 12952933 -176326621 - AluJb SINE Alu -6 306 1 2326 97 3 0 chr6 12954289 12954588 -176324966 + AluSq SINE Alu 1 300 -13 207 288 0 17 chr6 12954788 12954847 -176324707 + L2 LINE L2 3190 3247 -25 203 250 21 0 chr6 12954849 12954897 -176324657 + CT-rich Low_complexity Low_complexity 1 49 0 212 225 70 14 chr6 12954899 12954970 -176324584 - L2 LINE L2 -5 3267 3193 314 208 146 21 chr6 12955157 12955253 -176324301 - L2 LINE L2 0 3313 3206 713 279 83 0 chr6 12955430 12955683 -176323871 - L2 LINE L2 -317 2996 2728 2482 64 0 0 chr6 12955684 12955979 -176323575 + AluY SINE Alu 1 295 -16 488 305 121 0 chr6 12956008 12956198 -176323356 + MIR SINE MIR 1 213 -49 220 344 33 22 chr6 12956281 12956371 -176323183 - MIR SINE MIR -155 107 17 1730 183 83 74 chr6 12956447 12956618 -176322936 + MLT1C LTR MaLR 1 169 -298 2164 124 0 3 chr6 12956618 12956925 -176322629 - AluSx SINE Alu -2 310 5 1730 183 83 74 chr6 12956925 12957211 -176322343 + MLT1C LTR MaLR 169 462 -5 1421 170 90 7 chr6 12958116 12958237 -176321317 + AluJo SINE Alu 1 111 -201 216 0 0 0 chr6 12958237 12958261 -176321293 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1421 170 90 7 chr6 12958261 12958416 -176321138 + AluJo SINE Alu 111 300 -12 2048 184 23 10 chr6 12959010 12959395 -176320159 + MLT1B LTR MaLR 1 390 0 1066 281 97 60 chr6 12959446 12959705 -176319849 + L2 LINE L2 2840 3125 -188 1927 76 0 0 chr6 12959705 12959941 -176319613 + AluY SINE Alu 60 295 -16 1066 281 97 60 chr6 12959941 12960133 -176319421 + L2 LINE L2 3125 3308 -5 241 227 136 0 chr6 12960152 12960218 -176319336 - MIR SINE MIR -1 261 187 1009 132 92 0 chr6 12960463 12960615 -176318939 + AluSg/x SINE Alu 135 300 -12 2724 32 0 3 chr6 12961612 12961922 -176317632 + AluY SINE Alu 1 309 -2 186 43 0 0 chr6 12961959 12961982 -176317572 + (TA)n Simple_repeat Simple_repeat 1 23 0 241 217 24 48 chr6 12962014 12962097 -176317457 - L1MC4 LINE L1 -1341 6701 6621 350 247 13 52 chr6 12962120 12962274 -176317280 - HAL1b LINE L1 -7 1341 1194 526 318 50 0 chr6 12962486 12962687 -176316867 - Charlie8 DNA MER1_type -2152 265 55 1842 154 7 7 chr6 12962687 12962985 -176316569 + AluJo SINE Alu 9 306 -6 204 227 0 0 chr6 12963032 12963076 -176316478 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 582 187 87 124 chr6 12963176 12963268 -176316286 - HAL1b LINE L1 -191 1157 1063 2311 107 0 3 chr6 12963268 12963576 -176315978 + AluSc SINE Alu 1 307 -2 582 187 87 124 chr6 12963576 12963782 -176315772 - HAL1b LINE L1 -285 1063 870 1933 131 34 10 chr6 12964056 12964354 -176315200 + AluJo SINE Alu 1 305 -7 265 219 109 0 chr6 12964694 12964758 -176314796 - MIR3 SINE MIR -27 181 111 2080 110 73 51 chr6 12965061 12965417 -176314137 - THE1B LTR MaLR 0 364 1 2008 157 7 0 chr6 12965503 12965803 -176313751 - AluJb SINE Alu -10 302 1 24 53 0 0 chr6 12965909 12965947 -176313607 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr6 12966017 12966040 -176313514 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2241 64 0 18 chr6 12966172 12966452 -176313102 + AluY SINE Alu 28 302 -9 240 59 0 0 chr6 12966572 12966606 -176312948 + (TG)n Simple_repeat Simple_repeat 1 34 0 541 318 106 0 chr6 12966784 12967029 -176312525 + L2 LINE L2 687 957 -2357 585 262 54 47 chr6 12967283 12967581 -176311973 - L1ME3A LINE L1 -219 5951 5652 2657 259 132 68 chr6 12967657 12969258 -176310296 + L2 LINE L2 964 2666 -648 1352 230 104 211 chr6 12969314 12969387 -176310167 - L1ME3 LINE L1 -4 6158 6079 1743 156 20 89 chr6 12969387 12969457 -176310097 + MLT1A1 LTR MaLR 1 74 -291 2220 120 0 0 chr6 12969457 12969758 -176309796 - AluSx SINE Alu -11 301 1 1743 156 20 89 chr6 12969758 12970079 -176309475 + MLT1A1 LTR MaLR 74 365 0 1352 230 104 211 chr6 12970079 12970533 -176309021 - L1ME3 LINE L1 -83 6079 5578 832 165 0 8 chr6 12970533 12970666 -176308888 - FLAM_C SINE Alu -1 132 1 1352 230 104 211 chr6 12970666 12970724 -176308830 - L1ME3 LINE L1 -584 5578 5515 1507 144 20 111 chr6 12970724 12971065 -176308489 + AluYb8 SINE Alu 1 310 -8 1352 230 104 211 chr6 12971065 12971229 -176308325 - L1ME3 LINE L1 -647 5515 5438 747 296 103 40 chr6 12971299 12971724 -176307830 + L2 LINE L2 2848 3299 -14 269 241 12 24 chr6 12971798 12971881 -176307673 + CT-rich Low_complexity Low_complexity 4 85 0 1638 165 26 0 chr6 12972026 12972292 -176307262 + AluJb SINE Alu 4 276 -36 251 291 311 0 chr6 12975216 12975319 -176304235 + L2 LINE L2 3138 3272 0 1823 161 3 40 chr6 12976044 12976368 -176303186 - AluJo SINE Alu 0 312 1 773 124 23 16 chr6 12977014 12977143 -176302411 - L1MA7 LINE L1 -130 6161 6032 763 150 22 83 chr6 12977137 12977276 -176302278 + L1MA7 LINE L1 6123 6250 -41 * 2154 107 3 13 chr6 12977276 12977584 -176301970 - AluSg SINE Alu -5 305 1 763 150 22 83 chr6 12977584 12977624 -176301930 + L1MA7 LINE L1 6250 6291 0 2184 112 3 7 chr6 12978465 12978760 -176300794 - AluSx SINE Alu -18 294 1 284 336 29 36 chr6 12978779 12978919 -176300635 + L2 LINE L2 3134 3272 0 325 300 53 41 chr6 12978957 12979127 -176300427 - L2 LINE L2 -202 3070 2899 409 230 7 82 chr6 12979526 12979661 -176299893 - L2 LINE L2 -5 3267 3143 327 219 115 31 chr6 12979731 12979827 -176299727 - MIR SINE MIR -86 176 73 216 86 0 0 chr6 12979956 12979991 -176299563 + (CA)n Simple_repeat Simple_repeat 2 36 0 194 312 46 9 chr6 12980486 12980595 -176298959 - L3b LINE CR1 -350 1233 1121 3450 191 40 8 chr6 12980704 12981327 -176298227 + MER82 DNA MER2_type 11 653 0 25 31 0 0 chr6 12981570 12981602 -176297952 + AT_rich Low_complexity Low_complexity 1 32 0 40 0 0 0 chr6 12982581 12982621 -176296933 + AT_rich Low_complexity Low_complexity 1 40 0 365 137 29 29 chr6 12982621 12982760 -176296794 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 273 299 118 76 chr6 12983842 12983986 -176295568 - MIR3 SINE MIR -8 200 51 270 286 104 39 chr6 12984928 12985110 -176294444 - MIR SINE MIR -67 195 2 346 196 134 10 chr6 12985589 12985686 -176293868 + MIR3 SINE MIR 48 156 -52 998 168 100 0 chr6 12986181 12986371 -176293183 + MER3 DNA MER1_type 1 209 0 1727 132 88 7 chr6 12986782 12987054 -176292500 - AluSx SINE Alu -18 294 1 3743 47 2 11 chr6 12987318 12987769 -176291785 - L1PA5 LINE L1 0 6154 5708 2227 100 3 10 chr6 12988385 12988685 -176290869 + AluSx SINE Alu 4 301 -11 824 328 31 22 chr6 12989793 12990113 -176289441 + MLT1J LTR MaLR 10 332 -179 1787 161 55 0 chr6 12990121 12990412 -176289142 + AluJo SINE Alu 1 307 -5 785 281 136 13 chr6 12991284 12991594 -176287960 + MLT1J LTR MaLR 159 506 -5 2085 94 3 21 chr6 12991649 12991937 -176287617 - AluSx SINE Alu -1 311 29 682 244 19 6 chr6 12992879 12993039 -176286515 + MIR SINE MIR 20 181 -81 186 323 202 0 chr6 12993222 12993321 -176286233 + L2 LINE L2 2851 2969 -303 2552 132 62 7 chr6 12993460 12993782 -176285772 - Tigger2 DNA MER2_type 0 2718 2366 397 0 38 0 chr6 12993782 12993835 -176285719 + (GGA)n Simple_repeat Simple_repeat 2 56 0 2552 132 62 7 chr6 12993835 12993930 -176285624 - Tigger2 DNA MER2_type -352 2366 2278 404 179 15 0 chr6 12993926 12993993 -176285561 - Tigger2 DNA MER2_type -2650 68 1 * 589 200 48 61 chr6 12994503 12994733 -176284821 - Charlie1a DNA MER1_type 0 1455 1229 1940 197 44 19 chr6 12994734 12995166 -176284388 - Charlie1a DNA MER1_type -590 865 423 797 184 21 14 chr6 12995192 12995333 -176284221 - Charlie1a DNA MER1_type -1313 142 1 223 291 101 42 chr6 12995672 12995839 -176283715 - MIR SINE MIR -46 216 40 301 258 0 0 chr6 12997450 12997512 -176282042 + L2 LINE L2 3250 3311 -2 2191 126 7 0 chr6 12998023 12998333 -176281221 - AluSx SINE Alu 0 312 1 561 239 112 30 chr6 12998362 12998546 -176281008 + MLT1A2 LTR MaLR 3 190 -184 710 192 23 57 chr6 12998731 12998908 -176280646 + MLT1A2 LTR MaLR 204 374 0 370 250 214 0 chr6 12999558 12999702 -176279852 - MER5A DNA MER1_type -6 183 4 534 189 78 46 chr6 13002400 13002553 -176277001 + LTR45B LTR ERV1 332 489 0 204 125 0 0 chr6 13003385 13003417 -176276137 + (GAA)n Simple_repeat Simple_repeat 1 32 0 391 232 22 111 chr6 13003767 13003948 -176275606 - L2 LINE L2 -2 3311 3147 422 323 111 66 chr6 13004306 13005023 -176274531 + L2 LINE L2 2439 3185 -87 294 307 46 44 chr6 13005528 13005828 -176273726 + L1ME LINE L1 3566 3863 -2283 258 295 13 0 chr6 13006249 13006327 -176273227 - MER116 DNA Mariner -1 79 1 1779 149 9 35 chr6 13006559 13006875 -176272679 + AluJo SINE Alu 1 308 -4 1748 167 20 7 chr6 13008666 13008966 -176270588 + AluJb SINE Alu 1 304 -8 341 312 112 54 chr6 13009628 13010244 -176269310 + L1ME LINE L1 4089 4847 -1299 181 288 51 0 chr6 13010356 13010415 -176269139 + L2 LINE L2 3251 3312 -1 226 318 143 32 chr6 13010834 13011211 -176268343 - HAL1 LINE L1 -53 2454 2036 729 264 60 0 chr6 13011388 13011653 -176267901 + L1ME LINE L1 5501 5781 -340 194 340 55 74 chr6 13012109 13012365 -176267189 - L2 LINE L2 -2845 469 219 2277 123 0 0 chr6 13013084 13013386 -176266168 + AluSq SINE Alu 1 302 -11 205 283 85 38 chr6 13014725 13014831 -176264723 + MIR SINE MIR 14 124 -138 1555 96 50 0 chr6 13015012 13015231 -176264323 + MER30 DNA MER1_type 1 230 0 1728 183 15 66 chr6 13015782 13016193 -176263361 + MLT1B LTR MaLR 1 390 0 448 301 72 80 chr6 13016966 13017315 -176262239 - L2 LINE L2 -62 3210 2865 1581 122 8 0 chr6 13017557 13017811 -176261743 + Tigger1 DNA MER2_type 1 256 -2162 417 71 0 0 chr6 13017822 13017878 -176261676 + Tigger1 DNA MER2_type 1415 1470 -948 * 6167 106 18 1 chr6 13017877 13018817 -176260737 + Tigger1 DNA MER2_type 617 1572 -846 12264 177 30 11 chr6 13018822 13021484 -176258070 - L1 LINE L1 -1000 6565 3851 1765 264 48 19 chr6 13021487 13022467 -176257087 - L1 LINE L1 -3814 3751 2740 2119 124 0 29 chr6 13022947 13023261 -176256293 - AluSq SINE Alu -8 305 1 429 300 83 83 chr6 13023470 13023833 -176255721 - L2 LINE L2 -47 3225 2863 198 0 0 0 chr6 13024099 13024121 -176255433 + (T)n Simple_repeat Simple_repeat 1 22 0 399 210 121 57 chr6 13025017 13025141 -176254413 + L2 LINE L2 3182 3313 0 301 272 99 0 chr6 13025211 13025324 -176254230 - MIR SINE MIR -50 158 34 540 83 31 10 chr6 13025423 13025519 -176254035 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 28 86 0 0 chr6 13026033 13026103 -176253451 + AT_rich Low_complexity Low_complexity 1 70 0 243 0 0 0 chr6 13026297 13026324 -176253230 + (TG)n Simple_repeat Simple_repeat 1 27 0 2550 71 0 0 chr6 13026376 13026685 -176252869 + AluY SINE Alu 2 310 -1 264 355 45 0 chr6 13026878 13026988 -176252566 - L2 LINE L2 -20 3252 3138 245 307 139 7 chr6 13027131 13027268 -176252286 - L2 LINE L2 -219 3053 2899 207 302 125 0 chr6 13027724 13027820 -176251734 - L2 LINE L2 -785 2529 2422 866 243 19 10 chr6 13027826 13028032 -176251522 - MIR SINE MIR 0 262 55 289 329 47 47 chr6 13028012 13028246 -176251308 - L2 LINE L2 -1067 2247 2014 * 2291 93 10 16 chr6 13029104 13029417 -176250137 + AluSx SINE Alu 1 311 -1 219 311 16 33 chr6 13029603 13029725 -176249829 + L2 LINE L2 3126 3245 -68 22 0 0 0 chr6 13030924 13030946 -176248608 + AT_rich Low_complexity Low_complexity 1 22 0 1980 141 7 0 chr6 13031107 13031413 -176248141 + AluSx SINE Alu 1 308 0 204 206 82 55 chr6 13031964 13032037 -176247517 - MIR SINE MIR -96 166 92 261 180 0 0 chr6 13033068 13033118 -176246436 + CT-rich Low_complexity Low_complexity 3 52 0 744 138 69 0 chr6 13034884 13035000 -176244554 + AluJb SINE Alu 161 284 -28 480 35 0 0 chr6 13035000 13035058 -176244496 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 200 122 41 0 chr6 13035058 13035107 -176244447 + GA-rich Low_complexity Low_complexity 3 53 0 1136 75 0 32 chr6 13035107 13035293 -176244261 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 26 88 0 0 chr6 13035569 13035637 -176243917 + AT_rich Low_complexity Low_complexity 1 68 0 2070 107 42 0 chr6 13036065 13036354 -176243200 - AluSp SINE Alu -12 301 1 469 185 66 13 chr6 13036514 13036665 -176242889 - MER113 DNA MER1_type? -361 160 2 1921 142 0 25 chr6 13037326 13037642 -176241912 + AluJo SINE Alu 1 308 -4 402 31 47 0 chr6 13038143 13038207 -176241347 + (TC)n Simple_repeat Simple_repeat 2 68 0 378 0 0 0 chr6 13038207 13038249 -176241305 + (CA)n Simple_repeat Simple_repeat 1 42 0 180 77 0 0 chr6 13038568 13038594 -176240960 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 348 330 68 0 chr6 13043422 13043525 -176236029 - MIR SINE MIR -57 151 42 180 0 0 0 chr6 13045415 13045435 -176234119 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr6 13045977 13046006 -176233548 + AT_rich Low_complexity Low_complexity 1 29 0 221 268 42 56 chr6 13048759 13048830 -176230724 + MIR SINE MIR 83 152 -56 252 306 35 0 chr6 13049584 13049669 -176229885 - MIR SINE MIR -68 140 53 21 0 0 0 chr6 13049940 13049961 -176229593 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 3 0 chr6 13050019 13050328 -176229226 - AluSp SINE Alu -3 310 1 191 304 30 67 chr6 13050660 13050795 -176228759 - MIR SINE MIR -83 179 50 23 0 0 0 chr6 13051985 13052008 -176227546 + AT_rich Low_complexity Low_complexity 1 23 0 4018 119 2 5 chr6 13052011 13052622 -176226932 - L1PB3 LINE L1 -1 6153 5545 279 333 56 0 chr6 13052784 13052910 -176226644 + MER94 DNA DNA 2 134 0 217 347 0 14 chr6 13053052 13053124 -176226430 + L2 LINE L2 3202 3272 0 242 259 82 24 chr6 13053501 13053586 -176225968 - L2 LINE L2 -896 2418 2329 2595 128 6 60 chr6 13053598 13054023 -176225531 + MER65A LTR ERV1 1 400 -45 1750 176 14 3 chr6 13054023 13054312 -176225242 - AluJo SINE Alu -20 292 1 2595 128 6 60 chr6 13054312 13054356 -176225198 + MER65A LTR ERV1 400 445 0 494 235 16 43 chr6 13054365 13054552 -176225002 - L1MC5 LINE L1 -55 7906 7725 624 220 83 38 chr6 13054714 13054928 -176224626 - MIR SINE MIR -14 248 13 438 155 0 0 chr6 13055758 13055829 -176223725 - MER92C LTR ERV1 0 554 484 335 235 174 0 chr6 13055974 13056072 -176223482 - MER92B LTR ERV1 -521 115 1 357 196 22 33 chr6 13056917 13057009 -176222545 - LTR37A LTR ERV1 -326 100 10 2320 210 31 76 chr6 13057016 13058051 -176221503 - MER31-int LTR ERV1 -679 5492 3625 373 196 49 29 chr6 13058116 13058218 -176221336 - MER31-int LTR ERV1 -1662 3274 3171 1239 127 183 31 chr6 13058414 13058701 -176220853 - MSTA LTR MaLR 0 428 100 191 341 66 11 chr6 13058831 13058922 -176220632 - MER5B DNA MER1_type -82 96 1 2394 128 5 11 chr6 13059545 13059912 -176219642 + MLT1A1 LTR MaLR 1 365 0 2126 132 0 3 chr6 13060089 13060392 -176219162 - AluSx SINE Alu -10 302 1 378 275 20 40 chr6 13060569 13060769 -176218785 - MER31-int LTR ERV1 -3061 1875 1680 306 236 12 61 chr6 13060910 13061075 -176218479 - MER31-int LTR ERV1 -3493 1443 1287 502 288 4 49 chr6 13061163 13061406 -176218148 - MER31-int LTR ERV1 -3664 1272 1041 571 295 69 6 chr6 13061865 13062038 -176217516 + MIR SINE MIR 3 186 -76 1966 136 4 0 chr6 13062122 13062430 -176217124 - AluJb SINE Alu 0 309 1 362 331 42 14 chr6 13062477 13062619 -176216935 - MER5A DNA MER1_type -6 183 38 2199 93 7 0 chr6 13062669 13062949 -176216605 + AluSc SINE Alu 1 282 -27 510 169 16 33 chr6 13062965 13063148 -176216406 + (TA)n Simple_repeat Simple_repeat 1 180 0 317 309 259 10 chr6 13063268 13063469 -176216085 + L2 LINE L2 3020 3270 -2 327 115 19 0 chr6 13063594 13063646 -176215908 + L1M4 LINE L1 5203 5255 -891 535 229 104 26 chr6 13064185 13064377 -176215177 + L1ME3A LINE L1 5959 6165 -5 239 281 0 0 chr6 13064402 13064459 -176215095 + T-rich Low_complexity Low_complexity 1 57 0 3362 245 70 54 chr6 13065654 13067304 -176212250 - L1ME2 LINE L1 -11 6948 5243 2042 124 0 7 chr6 13067304 13067613 -176211941 + AluSg SINE Alu 2 308 0 3362 245 70 54 chr6 13067613 13068339 -176211215 - L1ME2 LINE L1 -1716 5243 4530 270 219 0 0 chr6 13068340 13068404 -176211150 + (TA)n Simple_repeat Simple_repeat 2 65 0 266 250 0 22 chr6 13068404 13068496 -176211058 - L1MC4 LINE L1 -1339 6703 6614 234 230 0 80 chr6 13068420 13068520 -176211034 + L1MC4 LINE L1 6614 6705 -1337 * 2095 132 6 3 chr6 13068548 13068875 -176210679 - MER46B DNA MER2_type -1 235 33 994 317 62 29 chr6 13068913 13069636 -176209918 - L1ME2 LINE L1 -5004 1419 817 1899 102 0 0 chr6 13070803 13071049 -176208505 - AluSq SINE Alu -16 297 52 270 239 35 115 chr6 13071553 13071666 -176207888 - L1ME2 LINE L1 -5980 443 340 1594 183 39 14 chr6 13071723 13072008 -176207546 + AluJb SINE Alu 4 295 -17 269 264 16 109 chr6 13072095 13072158 -176207396 - L1ME2 LINE L1 -6240 183 116 1616 177 0 31 chr6 13072158 13072473 -176207081 - AluJo SINE Alu 0 311 6 269 264 16 109 chr6 13072473 13072601 -176206953 - L1ME2 LINE L1 -6307 116 9 288 0 0 0 chr6 13072647 13072679 -176206875 + (CA)n Simple_repeat Simple_repeat 2 33 0 1069 231 9 5 chr6 13072748 13072964 -176206590 + MER20 DNA MER1_type 3 219 0 957 163 12 0 chr6 13073624 13073784 -176205770 + FRAM SINE Alu 6 167 -9 33 0 0 0 chr6 13074369 13074402 -176205152 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr6 13075007 13075033 -176204521 + (A)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr6 13076644 13076665 -176202889 + AT_rich Low_complexity Low_complexity 1 21 0 2006 109 31 3 chr6 13076928 13077221 -176202333 + AluSq SINE Alu 1 301 -12 210 207 35 17 chr6 13077520 13077578 -176201976 - MIR3 SINE MIR -7 201 143 497 274 57 33 chr6 13078501 13078800 -176200754 + L1MEd LINE L1 592 897 -5222 238 359 53 57 chr6 13079176 13079441 -176200113 + L2 LINE L2 2553 2816 -498 243 0 0 0 chr6 13129592 13129619 -176149935 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1542 170 60 7 chr6 13132806 13133089 -176146465 - AluJb SINE Alu -14 298 1 328 238 103 8 chr6 13133126 13133252 -176146302 - MIR SINE MIR -6 256 119 693 164 0 0 chr6 13133508 13133618 -176145936 + FLAM_C SINE Alu 2 111 -32 276 100 0 0 chr6 13133624 13133664 -176145890 + (TTA)n Simple_repeat Simple_repeat 2 41 0 515 217 19 0 chr6 13133923 13134029 -176145525 + MER5A DNA MER1_type 2 109 -80 2435 158 15 33 chr6 13134354 13134879 -176144675 + MER6A DNA MER2_type 43 605 0 2508 55 0 10 chr6 13134990 13135302 -176144252 - AluY SINE Alu -2 309 1 2162 117 17 0 chr6 13135468 13135758 -176143796 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr6 13135758 13135781 -176143773 + (GA)n Simple_repeat Simple_repeat 2 24 0 618 21 21 32 chr6 13135962 13136055 -176143499 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 1479 189 10 38 chr6 13136056 13136548 -176143006 - AluJo SINE Alu 0 483 1 341 261 135 79 chr6 13136601 13136816 -176142738 + L2 LINE L2 3045 3271 -1 236 376 20 7 chr6 13137533 13137682 -176141872 + CT-rich Low_complexity Low_complexity 2 152 0 5341 128 2 15 chr6 13138647 13138858 -176140696 - L1PA13 LINE L1 -7 6156 5944 2271 122 125 10 chr6 13138858 13139242 -176140312 - MSTA LTR MaLR 0 428 1 9636 172 18 10 chr6 13139242 13140881 -176138673 - MSTA-int LTR MaLR 0 1651 1 2230 118 121 23 chr6 13140881 13141271 -176138283 - MSTA LTR MaLR 0 428 1 5341 128 2 15 chr6 13141271 13141907 -176137647 - L1PA13 LINE L1 -216 5947 5318 1967 120 33 7 chr6 13141915 13142214 -176137340 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 13142595 13142617 -176136937 + AT_rich Low_complexity Low_complexity 1 22 0 181 233 17 50 chr6 13144786 13144846 -176134708 - L2 LINE L2 -55 3258 3201 403 184 22 0 chr6 13145134 13145220 -176134334 + L1ME3 LINE L1 6012 6100 -62 180 0 0 0 chr6 13145521 13145541 -176134013 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 463 240 13 52 chr6 13145676 13145830 -176133724 - MER5B DNA MER1_type -11 167 20 273 180 0 0 chr6 13146225 13146275 -176133279 - Alu SINE Alu -2 300 251 2058 146 3 3 chr6 13146309 13146617 -176132937 - AluSx SINE Alu -4 308 1 944 123 0 0 chr6 13146628 13146750 -176132804 - FLAM_C SINE Alu -21 122 1 1542 192 11 7 chr6 13148196 13148477 -176131077 - AluJo SINE Alu -30 282 1 245 229 48 24 chr6 13149122 13149205 -176130349 - L2 LINE L2 0 3313 3229 198 171 0 0 chr6 13149315 13149356 -176130198 + A-rich Low_complexity Low_complexity 1 41 0 1182 261 121 2 chr6 13149541 13149939 -176129615 - LTR16B LTR ERVL -2 462 18 234 257 98 87 chr6 13149941 13149991 -176129563 - MLT1L LTR MaLR -13 602 554 885 193 156 0 chr6 13149991 13150183 -176129371 - MER58A DNA MER1_type -1 223 2 234 257 98 87 chr6 13150183 13150315 -176129239 - MLT1L LTR MaLR -61 554 418 1036 250 79 53 chr6 13150419 13151124 -176128430 - L2 LINE L2 -15 3298 2555 1123 159 92 0 chr6 13151179 13151374 -176128180 - MER30 DNA MER1_type -17 213 1 591 311 45 8 chr6 13151374 13151641 -176127913 - L2 LINE L2 -820 2494 2218 234 242 0 76 chr6 13151643 13151709 -176127845 - MLT1J LTR MaLR -340 171 111 198 235 141 0 chr6 13151804 13151889 -176127665 + MIR SINE MIR 100 196 -66 2243 121 3 0 chr6 13151901 13152208 -176127346 + AluSq SINE Alu 1 308 -5 381 22 0 0 chr6 13153058 13153104 -176126450 + (TG)n Simple_repeat Simple_repeat 1 46 0 408 71 0 0 chr6 13153104 13153160 -176126394 + (GA)n Simple_repeat Simple_repeat 2 57 0 2467 130 19 3 chr6 13153160 13153538 -176126016 - MLT1B LTR MaLR -6 384 1 213 39 0 0 chr6 13153538 13153564 -176125990 + (TG)n Simple_repeat Simple_repeat 2 27 0 215 152 22 0 chr6 13153572 13153618 -176125936 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 215 233 23 23 chr6 13153652 13153738 -176125816 + (TA)n Simple_repeat Simple_repeat 1 86 0 342 0 0 0 chr6 13154494 13154532 -176125022 + (TG)n Simple_repeat Simple_repeat 2 39 0 1934 146 0 0 chr6 13154532 13154812 -176124742 - AluJb SINE Alu -27 285 6 262 229 16 0 chr6 13154888 13154949 -176124605 + MER5A DNA MER1_type 34 95 -94 549 299 6 0 chr6 13155231 13155408 -176124146 + MIR SINE MIR 80 257 -5 2435 325 121 37 chr6 13155783 13157733 -176121821 - L2 LINE L2 -49 3264 1147 25 0 0 0 chr6 13158213 13158238 -176121316 + AT_rich Low_complexity Low_complexity 1 25 0 752 211 48 6 chr6 13159217 13159383 -176120171 + MER5B DNA MER1_type 2 174 -4 535 229 153 0 chr6 13159395 13159552 -176120002 - MER5A DNA MER1_type 0 189 9 474 284 79 49 chr6 13159591 13159952 -176119602 + L2 LINE L2 2917 3311 -2 394 203 76 0 chr6 13160020 13160099 -176119455 - MER5B DNA MER1_type -30 148 64 226 271 45 75 chr6 13160706 13160839 -176118715 - MIR SINE MIR -75 187 59 302 247 11 21 chr6 13161705 13161798 -176117756 - L3 LINE CR1 -181 1396 1305 180 325 161 46 chr6 13161869 13162174 -176117380 - L3 LINE CR1 -291 1286 947 2131 227 23 24 chr6 13162706 13162740 -176116814 - L1 LINE L1 -1100 5046 5013 1760 178 20 0 chr6 13162740 13163032 -176116522 - AluJo SINE Alu -14 298 1 2131 227 23 24 chr6 13163032 13163573 -176115981 - L1 LINE L1 -1133 5013 4472 901 165 15 0 chr6 13163586 13163719 -176115835 - AluJo SINE Alu -177 135 1 394 164 39 0 chr6 13163720 13163824 -176115730 - L1 LINE L1 -1669 4477 4370 396 243 27 81 chr6 13163829 13163977 -176115577 - MIR SINE MIR -105 157 18 272 303 100 40 chr6 13164703 13164749 -176114805 + L2 LINE L2 2440 2482 -832 186 43 0 0 chr6 13164749 13164772 -176114782 + (TCCA)n Simple_repeat Simple_repeat 2 24 0 272 303 100 40 chr6 13164772 13164976 -176114578 + L2 LINE L2 2482 2705 -609 968 292 62 28 chr6 13165161 13165630 -176113924 - LTR33A LTR ERVL -24 499 15 226 306 42 14 chr6 13165632 13165704 -176113850 + L2 LINE L2 2987 3060 -212 489 278 122 10 chr6 13165874 13166162 -176113392 - L1MC/D LINE L1 -2234 5574 5255 2032 108 0 4 chr6 13166460 13166729 -176112825 - AluSq SINE Alu -18 295 28 636 264 119 42 chr6 13167419 13168182 -176111372 + L1MDa LINE L1 1640 2536 -4185 294 213 162 78 chr6 13168334 13168373 -176111181 + L1MDa LINE L1 2526 2560 -3980 1310 231 72 19 chr6 13168373 13168749 -176110805 - MSTD LTR MaLR 0 396 1 294 213 162 78 chr6 13168749 13168889 -176110665 + L1MDa LINE L1 2560 2687 -3853 1914 142 0 24 chr6 13168889 13169201 -176110353 + AluSx SINE Alu 1 305 0 294 213 162 78 chr6 13169201 13169353 -176110201 + L1MDa LINE L1 2687 2887 -3653 349 253 18 18 chr6 13169457 13169569 -176109985 + HERVL LTR ERVL 3074 3185 -2300 778 316 132 32 chr6 13169677 13170387 -176109167 + HERVL LTR ERVL 3377 4157 -1607 527 319 19 5 chr6 13170848 13171055 -176108499 + LTR33 LTR ERVL 5 214 -307 605 257 34 6 chr6 13171098 13171273 -176108281 + LTR33 LTR ERVL 306 485 -36 922 198 11 6 chr6 13174065 13174242 -176105312 + MLT1D LTR MaLR 1 178 -327 669 67 0 0 chr6 13174242 13174331 -176105223 + L1P5 LINE L1 5453 5541 -610 1974 159 3 0 chr6 13174606 13174915 -176104639 - AluJb SINE Alu -2 310 1 288 331 96 12 chr6 13174992 13175158 -176104396 - MIR SINE MIR -71 191 12 22 0 0 0 chr6 13175203 13175225 -176104329 + AT_rich Low_complexity Low_complexity 1 22 0 904 272 128 37 chr6 13176404 13177059 -176102495 + Charlie7 DNA MER1_type 28 742 -1870 22 70 0 0 chr6 13177208 13177251 -176102303 + AT_rich Low_complexity Low_complexity 1 43 0 1270 144 95 27 chr6 13177492 13177714 -176101840 + AluJb SINE Alu 1 237 -75 700 272 118 45 chr6 13177872 13178320 -176101234 + L2 LINE L2 2832 3312 -1 278 184 20 0 chr6 13178743 13178792 -176100762 + 5S rRNA rRNA 1 50 -71 22 0 0 0 chr6 13179628 13179650 -176099904 + AT_rich Low_complexity Low_complexity 1 22 0 191 234 198 54 chr6 13180397 13180508 -176099046 - L2 LINE L2 0 3272 3146 238 0 81 0 chr6 13183638 13183675 -176095879 + A-rich Low_complexity Low_complexity 3 42 0 240 191 0 0 chr6 13183979 13184026 -176095528 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 317 235 12 24 chr6 13184627 13184712 -176094842 + MIR3 SINE MIR 109 192 -16 319 236 55 67 chr6 13185004 13185169 -176094385 - MER112 DNA MER1_type -64 196 34 381 328 0 37 chr6 13185452 13185586 -176093968 + MIR SINE MIR 22 150 -112 265 105 0 0 chr6 13185588 13185626 -176093928 + Alu SINE Alu 1 38 -263 325 94 0 57 chr6 13185743 13185796 -176093758 + AluJb SINE Alu 240 289 -11 5404 150 40 8 chr6 13185847 13187060 -176092494 + L1MA6 LINE L1 5053 6300 0 407 268 27 0 chr6 13187094 13187206 -176092348 + MIR SINE MIR 147 261 -1 5654 144 33 14 chr6 13187699 13187762 -176091792 + L1PB1 LINE L1 4340 4400 -1769 261 57 0 0 chr6 13187762 13187797 -176091757 + (CA)n Simple_repeat Simple_repeat 2 36 0 5654 144 33 14 chr6 13187797 13189526 -176090028 + L1PB1 LINE L1 4400 6169 0 378 254 79 28 chr6 13189791 13189948 -176089606 - MIR SINE MIR -40 168 3 387 334 83 21 chr6 13190151 13190678 -176088876 + L1ME4a LINE L1 5562 6121 0 2423 73 0 16 chr6 13191177 13191491 -176088063 - AluY SINE Alu 0 311 3 505 212 73 60 chr6 13193622 13193773 -176085781 + MIR SINE MIR 90 242 -20 222 118 0 0 chr6 13194170 13194204 -176085350 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1879 184 77 5 chr6 13194306 13194709 -176084845 - MSTB1 LTR MaLR 0 432 1 252 59 0 0 chr6 13195078 13195112 -176084442 + (TC)n Simple_repeat Simple_repeat 1 34 0 611 157 38 143 chr6 13195197 13195407 -176084147 - 7SK RNA RNA -5 188 1 1916 87 4 4 chr6 13196948 13197200 -176082354 - AluSx SINE Alu -60 252 1 23 33 0 0 chr6 13197926 13197956 -176081598 + AT_rich Low_complexity Low_complexity 1 30 0 229 358 18 18 chr6 13198084 13198193 -176081361 + L3 LINE CR1 1446 1554 -23 28 0 0 0 chr6 13198233 13198261 -176081293 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 13198633 13198677 -176080877 + AT_rich Low_complexity Low_complexity 1 44 0 600 286 12 74 chr6 13200416 13200707 -176078847 + MIR SINE MIR 2 262 0 243 384 13 33 chr6 13200914 13201065 -176078489 + L2 LINE L2 2150 2297 -1017 929 193 16 21 chr6 13201160 13201347 -176078207 + MER5A DNA MER1_type 4 189 0 270 0 0 0 chr6 13201369 13201399 -176078155 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1953 115 4 11 chr6 13201405 13201684 -176077870 - AluSq SINE Alu -36 277 1 200 291 48 87 chr6 13202748 13202851 -176076703 - L2 LINE L2 -35 3237 3139 1780 167 35 0 chr6 13202901 13203188 -176076366 + AluJo SINE Alu 1 297 -15 1131 106 7 0 chr6 13203196 13203347 -176076207 + AluSp SINE Alu 1 152 -161 991 147 6 0 chr6 13203449 13203612 -176075942 + AluSp SINE Alu 144 307 -6 453 338 27 34 chr6 13203767 13204063 -176075491 + HAL1 LINE L1 826 1119 -1388 300 299 41 41 chr6 13204284 13204431 -176075123 + HAL1 LINE L1 2328 2474 -33 1876 172 61 50 chr6 13205794 13206254 -176073300 + MLT1C LTR MaLR 3 467 0 350 325 7 7 chr6 13206531 13206685 -176072869 - L1ME LINE L1 -420 5701 5548 911 168 22 16 chr6 13206737 13206922 -176072632 + L1MA9 LINE L1 6125 6310 -2 222 333 123 9 chr6 13207140 13207254 -176072300 + MIR SINE MIR 120 246 -16 389 251 35 88 chr6 13207507 13207653 -176071901 + MIR SINE MIR 51 188 -74 2058 231 63 19 chr6 13207653 13208194 -176071360 - MLT1F1 LTR MaLR -2 565 1 389 251 35 88 chr6 13208194 13208218 -176071336 + MIR SINE MIR 188 212 -50 354 309 66 49 chr6 13208918 13209345 -176070209 + L1M4 LINE L1 4668 5101 -1045 303 289 18 78 chr6 13209453 13209609 -176069945 - MIR SINE MIR -12 250 105 505 259 17 0 chr6 13209609 13209725 -176069829 + MER5B DNA MER1_type 2 119 -59 195 189 27 0 chr6 13209733 13209770 -176069784 - MIR SINE MIR -164 98 61 605 255 34 7 chr6 13210156 13210305 -176069249 + MIR SINE MIR 5 157 -105 1701 245 98 6 chr6 13210314 13210796 -176068758 - MLT1F LTR MaLR -16 526 1 1391 188 4 8 chr6 13210832 13211072 -176068482 - MER8 DNA MER2_type 0 239 1 325 247 21 62 chr6 13211178 13211275 -176068279 + MER5B DNA MER1_type 83 175 -3 803 202 11 22 chr6 13211331 13211509 -176068045 + MER5B DNA MER1_type 2 177 -1 192 77 0 0 chr6 13213916 13213942 -176065612 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 234 299 0 72 chr6 13214585 13214682 -176064872 - L2 LINE L2 0 3313 3224 203 255 0 20 chr6 13215676 13215727 -176063827 - MIR SINE MIR -114 148 99 253 220 0 0 chr6 13215893 13215943 -176063611 - MIR SINE MIR -74 188 139 615 206 171 0 chr6 13216597 13216743 -176062811 + MER5A DNA MER1_type 13 183 -6 2058 121 0 17 chr6 13217294 13217591 -176061963 - AluSx SINE Alu -20 292 1 243 213 12 38 chr6 13217890 13217970 -176061584 + (TG)n Simple_repeat Simple_repeat 2 79 0 216 0 0 0 chr6 13218085 13218109 -176061445 + (TG)n Simple_repeat Simple_repeat 1 24 0 267 211 21 63 chr6 13218177 13218272 -176061282 + (TG)n Simple_repeat Simple_repeat 2 92 0 1072 301 43 10 chr6 13218446 13218844 -176060710 + L2 LINE L2 2378 2788 -526 717 256 110 18 chr6 13219037 13219256 -176060298 + MIR SINE MIR 3 241 -21 471 258 113 25 chr6 13219634 13219793 -176059761 + MIR SINE MIR 40 212 -50 247 346 86 25 chr6 13220219 13220381 -176059173 + L2 LINE L2 3098 3269 -3 952 123 0 19 chr6 13221226 13221380 -176058174 + L1PA14 LINE L1 6009 6159 -2 4019 101 10 2 chr6 13221887 13222471 -176057083 + L1PA13 LINE L1 5575 6163 0 2719 253 53 19 chr6 13222484 13224257 -176055297 - L1MEc LINE L1 -3101 3114 1331 370 318 15 45 chr6 13224474 13224606 -176054948 - L2 LINE L2 -1 3271 3144 1628 190 31 34 chr6 13226574 13226959 -176052595 - MLT1B LTR MaLR 0 390 7 184 254 102 0 chr6 13227280 13227339 -176052215 + MIR SINE MIR 90 154 -108 220 376 24 0 chr6 13227792 13227877 -176051677 + MIR3 SINE MIR 111 197 -11 1295 171 15 11 chr6 13228667 13228930 -176050624 - L1MA6 LINE L1 0 6300 6037 303 364 21 30 chr6 13229153 13229389 -176050165 + L2 LINE L2 2629 2862 -452 1504 229 51 20 chr6 13230056 13230505 -176049049 + MLT1C LTR MaLR 1 463 -4 2339 90 0 23 chr6 13230757 13231067 -176048487 - AluSx SINE Alu -9 303 1 305 169 34 17 chr6 13232705 13232764 -176046790 + L3 LINE CR1 433 492 -1085 447 365 79 16 chr6 13232788 13233092 -176046462 + L3 LINE CR1 985 1307 -270 402 290 126 28 chr6 13233111 13233295 -176046259 + MIR SINE MIR 4 204 -58 220 279 150 50 chr6 13233314 13233380 -176046174 + L3 LINE CR1 1317 1375 -202 2162 93 21 0 chr6 13233380 13233671 -176045883 + AluY SINE Alu 1 297 -14 220 279 150 50 chr6 13233671 13233744 -176045810 + L3 LINE CR1 1375 1470 -107 21 0 0 0 chr6 13234341 13234362 -176045192 + AT_rich Low_complexity Low_complexity 1 21 0 327 104 0 0 chr6 13235135 13235183 -176044371 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 232 261 23 85 chr6 13235343 13235468 -176044086 - MIR SINE MIR -89 119 6 * 514 348 108 32 chr6 13235432 13235932 -176043622 + L2 LINE L2 2030 2567 -747 198 0 0 0 chr6 13236792 13236814 -176042740 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1473 120 0 10 chr6 13236820 13237029 -176042525 - AluSg/x SINE Alu -21 291 85 2190 119 3 0 chr6 13237145 13237439 -176042115 + AluSc SINE Alu 1 295 -14 263 167 0 21 chr6 13237800 13237848 -176041706 + MIR SINE MIR 65 111 -151 261 255 43 152 chr6 13237871 13238102 -176041452 - L2 LINE L2 -6 3307 3102 1027 229 188 48 chr6 13238149 13238590 -176040964 + MLT1D LTR MaLR 3 505 0 218 343 46 28 chr6 13239242 13239350 -176040204 + L2 LINE L2 3158 3267 -5 1138 284 131 81 chr6 13239535 13239978 -176039576 - L2 LINE L2 0 3313 2893 2175 99 6 43 chr6 13239978 13240300 -176039254 + AluSq SINE Alu 1 310 -3 1138 284 131 81 chr6 13240300 13240796 -176038758 - L2 LINE L2 -420 2893 2423 2136 107 40 0 chr6 13240796 13241096 -176038458 + AluSx SINE Alu 1 312 0 1138 284 131 81 chr6 13241096 13241198 -176038356 - L2 LINE L2 -890 2423 2327 1299 208 123 42 chr6 13241198 13241627 -176037927 - MLT1C LTR MaLR -2 465 2 1138 284 131 81 chr6 13241627 13241829 -176037725 - L2 LINE L2 -986 2327 1978 21 0 0 0 chr6 13241832 13241853 -176037701 + AT_rich Low_complexity Low_complexity 1 21 0 453 304 27 70 chr6 13241876 13242205 -176037349 - L2 LINE L2 -1673 1641 1327 3845 60 31 52 chr6 13242205 13243264 -176036290 - MER11A LTR ERVK 0 1266 1 695 42 11 0 chr6 13243392 13243487 -176036067 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 1497 173 82 57 chr6 13243501 13243854 -176035700 + MLT1A1 LTR MaLR 2 363 -2 524 95 12 0 chr6 13243858 13243942 -176035612 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 2267 90 7 3 chr6 13244819 13245118 -176034436 - AluSg SINE Alu -10 300 1 272 196 0 0 chr6 13245295 13245341 -176034213 - L2 LINE L2 -12 3301 3256 203 130 22 22 chr6 13245530 13245576 -176033978 + (TTA)n Simple_repeat Simple_repeat 2 47 0 264 185 0 0 chr6 13245738 13245792 -176033762 + CT-rich Low_complexity Low_complexity 2 55 0 234 0 0 0 chr6 13245803 13245829 -176033725 + (CA)n Simple_repeat Simple_repeat 1 26 0 235 412 50 8 chr6 13248357 13248476 -176031078 + L2 LINE L2 3123 3246 -26 5813 112 25 4 chr6 13249596 13250552 -176029002 - L1MA5A LINE L1 -5 6292 5318 442 289 49 49 chr6 13250750 13250954 -176028600 - MER58C DNA MER1_type -1 214 11 220 208 19 0 chr6 13250986 13251039 -176028515 + (TG)n Simple_repeat Simple_repeat 1 54 0 1008 76 0 8 chr6 13251185 13251316 -176028238 - AluSq/x SINE Alu -182 130 1 28 0 0 0 chr6 13251317 13251345 -176028209 + AT_rich Low_complexity Low_complexity 1 28 0 269 325 0 4 chr6 13252628 13252730 -176026824 - MIR SINE MIR -66 142 47 296 305 78 14 chr6 13252932 13253073 -176026481 - MIR SINE MIR -74 188 39 1711 269 92 36 chr6 13253136 13254102 -176025452 + L2 LINE L2 2291 3313 0 273 206 260 0 chr6 13254571 13254644 -176024910 - MER63 DNA MER1_type -273 787 696 199 293 217 9 chr6 13254983 13255089 -176024465 + MIR SINE MIR 124 251 -11 23 0 0 0 chr6 13255337 13255360 -176024194 + AT_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr6 13255381 13255409 -176024145 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2613 45 0 3 chr6 13255649 13255957 -176023597 + AluY SINE Alu 1 307 -4 4585 153 37 2 chr6 13257136 13258009 -176021545 - L1MA8 LINE L1 -4 6287 5385 1898 131 44 7 chr6 13258062 13258359 -176021195 + AluSq SINE Alu 1 308 -5 1038 229 95 16 chr6 13258427 13258742 -176020812 + MER2 DNA MER2_type 5 344 0 432 306 61 11 chr6 13259010 13259190 -176020364 + MIR SINE MIR 20 208 -54 831 274 98 24 chr6 13259331 13259791 -176019763 + L2 LINE L2 2820 3313 0 180 0 0 0 chr6 13259832 13259852 -176019702 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 22 0 0 0 chr6 13260781 13260803 -176018751 + AT_rich Low_complexity Low_complexity 1 22 0 2260 85 0 0 chr6 13261321 13261626 -176017928 - AluSx SINE Alu 0 305 1 1642 179 41 10 chr6 13262852 13263142 -176016412 + AluJo SINE Alu 1 299 -13 2088 100 29 4 chr6 13263337 13263617 -176015937 + AluSq SINE Alu 11 297 -16 2115 65 0 0 chr6 13263999 13264289 -176015265 + AluY SINE Alu 35 324 0 1468 207 48 46 chr6 13264428 13264509 -176015045 - LTR40b LTR ERVL 0 462 383 2034 160 56 47 chr6 13264509 13264935 -176014619 - MSTB1 LTR MaLR 0 432 3 1468 207 48 46 chr6 13264935 13265288 -176014266 - LTR40b LTR ERVL -79 383 27 223 102 17 51 chr6 13265472 13265531 -176014023 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 1039 285 8 0 chr6 13266449 13266691 -176012863 + MIR SINE MIR 19 262 0 2256 103 7 0 chr6 13266776 13267076 -176012478 + AluSx SINE Alu 1 302 -10 309 192 0 0 chr6 13267099 13267151 -176012403 + L2 LINE L2 3258 3309 -4 1900 134 66 27 chr6 13268307 13268694 -176010860 + MLT1B LTR MaLR 1 390 0 255 256 61 24 chr6 13268822 13268904 -176010650 + MIR SINE MIR 60 144 -118 387 0 0 0 chr6 13269788 13269831 -176009723 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 759 159 0 0 chr6 13269831 13269944 -176009610 - FRAM SINE Alu -32 144 32 262 382 73 33 chr6 13270583 13270884 -176008670 - L2 LINE L2 -529 2785 2473 185 331 34 54 chr6 13271467 13271615 -176007939 + MIR3 SINE MIR 1 145 -63 27 0 0 0 chr6 13272484 13272511 -176007043 + AT_rich Low_complexity Low_complexity 1 27 0 205 196 0 22 chr6 13275230 13275276 -176004278 + CT-rich Low_complexity Low_complexity 3 47 0 269 160 0 0 chr6 13276015 13276065 -176003489 - MLT1K LTR MaLR -16 572 523 436 326 103 21 chr6 13276177 13276410 -176003144 - MLT1K LTR MaLR -241 347 96 327 191 0 0 chr6 13277061 13277129 -176002425 + GA-rich Low_complexity Low_complexity 3 70 0 232 287 22 42 chr6 13277672 13277793 -176001761 - MIR SINE MIR -33 175 53 2170 107 0 0 chr6 13280435 13280757 -175998797 - AluY SINE Alu 0 311 1 512 276 74 24 chr6 13281090 13281264 -175998290 - L1ME4a LINE L1 -204 5917 5753 2116 103 0 0 chr6 13281264 13281537 -175998017 - AluSq SINE Alu 0 313 41 512 276 74 24 chr6 13281537 13281742 -175997812 - L1ME4a LINE L1 -368 5753 5519 15256 181 36 35 chr6 13282065 13283930 -175995624 + L1PA13 LINE L1 14 1876 -4938 2265 118 0 3 chr6 13283930 13284235 -175995319 + AluSx SINE Alu 1 304 -8 15256 181 36 35 chr6 13284235 13285406 -175994148 + L1PA13 LINE L1 1876 3044 -3770 619 134 179 0 chr6 13285406 13285518 -175994036 + AluY SINE Alu 1 132 -179 15256 181 36 35 chr6 13285518 13285535 -175994019 + L1PA13 LINE L1 3044 3059 -3755 207 0 0 0 chr6 13285535 13285558 -175993996 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 243 0 0 0 chr6 13285557 13285584 -175993970 + (GA)n Simple_repeat Simple_repeat 2 28 0 15256 181 36 35 chr6 13285558 13289179 -175990375 + L1PA13 LINE L1 3059 6814 0 24 53 0 0 chr6 13289201 13289239 -175990315 + AT_rich Low_complexity Low_complexity 1 38 0 4987 136 48 14 chr6 13289666 13291297 -175988257 + L1PA16 LINE L1 4518 6166 0 1111 279 11 63 chr6 13291318 13291763 -175987791 + L2 LINE L2 2892 3313 0 1960 119 0 11 chr6 13291938 13292253 -175987301 - AluSx SINE Alu 0 314 3 447 278 149 26 chr6 13292277 13292471 -175987083 + MIR SINE MIR 37 254 -8 386 324 7 7 chr6 13292812 13292951 -175986603 - MIR SINE MIR -110 152 14 312 133 0 33 chr6 13297040 13297100 -175982454 + THE1C LTR MaLR 1 58 -317 259 200 0 0 chr6 13297105 13297160 -175982394 + THE1C LTR MaLR 10 64 -311 2031 144 17 17 chr6 13297161 13297514 -175982040 + THE1C LTR MaLR 23 375 0 306 0 0 0 chr6 13297988 13298022 -175981532 + (TG)n Simple_repeat Simple_repeat 2 35 0 724 103 8 8 chr6 13298163 13298280 -175981274 - L1PA13 LINE L1 0 6163 6047 3231 81 31 2 chr6 13298398 13298878 -175980676 - L1PA13 LINE L1 -85 6078 5585 465 295 72 21 chr6 13298925 13299118 -175980436 + MIR SINE MIR 44 246 -16 4998 160 14 30 chr6 13299346 13300717 -175978837 + L1MA7 LINE L1 4762 6153 -138 2293 106 0 0 chr6 13300717 13301010 -175978544 + AluSc SINE Alu 1 293 -16 216 97 0 0 chr6 13301011 13301042 -175978512 + (CA)n Simple_repeat Simple_repeat 2 32 0 4998 160 14 30 chr6 13301042 13301217 -175978337 + L1MA7 LINE L1 6152 6291 0 549 44 0 0 chr6 13302513 13302581 -175976973 + (CA)n Simple_repeat Simple_repeat 1 68 0 1984 161 7 0 chr6 13303952 13304251 -175975303 + AluJb SINE Alu 3 303 -9 205 268 0 18 chr6 13304599 13304655 -175974899 + GA-rich Low_complexity Low_complexity 5 59 0 4981 94 16 9 chr6 13305816 13306578 -175972976 + L1MA1 LINE L1 5265 6031 -271 1733 75 31 4 chr6 13306678 13306932 -175972622 + L1MA1 LINE L1 6042 6302 0 23 0 0 0 chr6 13306932 13306955 -175972599 + AT_rich Low_complexity Low_complexity 1 23 0 1773 157 7 4 chr6 13307376 13307657 -175971897 + AluJo SINE Alu 1 282 -30 203 152 0 0 chr6 13307659 13307692 -175971862 + GA-rich Low_complexity Low_complexity 2 34 0 237 108 0 0 chr6 13307695 13307732 -175971822 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 184 266 127 13 chr6 13307952 13308031 -175971523 + L2 LINE L2 2442 2529 -785 29 60 0 0 chr6 13308343 13308393 -175971161 + AT_rich Low_complexity Low_complexity 1 50 0 420 303 118 56 chr6 13308460 13308817 -175970737 - L1MC4a LINE L1 -1719 6089 5711 722 167 8 0 chr6 13308827 13308947 -175970607 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr6 13308947 13308968 -175970586 + AT_rich Low_complexity Low_complexity 1 21 0 299 246 123 35 chr6 13308986 13309157 -175970397 - L1MC4a LINE L1 -458 5663 5478 2162 97 35 0 chr6 13310088 13310377 -175969177 - AluY SINE Alu -12 299 1 9447 175 11 10 chr6 13310461 13312752 -175966802 - L1PA15 LINE L1 0 6165 3873 192 40 0 0 chr6 13312752 13312777 -175966777 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9447 175 11 10 chr6 13312777 13313388 -175966166 - L1PA15 LINE L1 -2292 3873 3264 1025 232 9 0 chr6 13313456 13313667 -175965887 - MER45C DNA AcHobo -740 213 1 338 286 53 8 chr6 13313671 13313804 -175965750 + MIR SINE MIR 84 222 -40 235 328 148 8 chr6 13314029 13314157 -175965397 - MER5A DNA MER1_type -1 188 43 * 253 293 53 13 chr6 13314098 13314173 -175965381 + MER5A DNA MER1_type 101 178 -11 350 237 40 0 chr6 13314230 13314306 -175965248 - MER2 DNA MER2_type 0 345 267 1056 174 46 0 chr6 13314333 13314529 -175965025 - MER2 DNA MER2_type -137 208 4 2034 191 95 35 chr6 13314585 13315047 -175964507 + LTR2B LTR ERV1 1 490 0 287 259 12 12 chr6 13315055 13315140 -175964414 - L1MC4 LINE L1 -138 7904 7820 2298 101 3 0 chr6 13315152 13315450 -175964104 + AluSp SINE Alu 1 299 -14 3134 202 58 52 chr6 13315483 13316424 -175963130 - L1ME2 LINE L1 -9 6155 5222 198 0 0 0 chr6 13316424 13316446 -175963108 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2301 77 0 0 chr6 13316449 13316735 -175962819 - AluSx SINE Alu -26 286 1 3134 202 58 52 chr6 13316735 13316802 -175962752 - L1ME2 LINE L1 -943 5221 5136 733 240 18 18 chr6 13318107 13318278 -175961276 - MER5A DNA MER1_type 0 189 19 1623 170 19 4 chr6 13369585 13369856 -175909698 - AluJo SINE Alu -37 275 1 337 310 62 35 chr6 13369907 13370532 -175909022 + L1ME3A LINE L1 4272 4913 -1233 626 216 49 56 chr6 13370811 13371117 -175908437 + L1ME3A LINE L1 5264 5567 -603 1637 152 7 55 chr6 13371117 13371263 -175908291 + AluJb SINE Alu 1 126 -186 2571 49 3 0 chr6 13371263 13371568 -175907986 + AluY SINE Alu 1 306 -5 1637 152 7 55 chr6 13371568 13371730 -175907824 + AluJb SINE Alu 126 294 -18 245 320 12 12 chr6 13371743 13371915 -175907639 + L1ME3A LINE L1 5785 5956 -214 2489 57 3 7 chr6 13372117 13372417 -175907137 - AluY SINE Alu -12 299 1 853 124 0 0 chr6 13373496 13373625 -175905929 - L1MA1 LINE L1 0 6302 6174 3504 179 26 9 chr6 13373990 13374689 -175904865 - MER50 LTR ERV1 -23 711 1 259 189 19 0 chr6 13374689 13374742 -175904812 - MER94 DNA DNA -78 56 3 241 286 14 14 chr6 13377164 13377234 -175902320 - L2 LINE L2 -14 3258 3189 193 352 40 40 chr6 13377444 13377569 -175901985 + L2 LINE L2 1342 1466 -1848 301 300 121 63 chr6 13377823 13378170 -175901384 + L2 LINE L2 1828 2194 -1120 631 303 46 26 chr6 13378183 13378490 -175901064 + L2 LINE L2 2475 2787 -527 184 350 82 0 chr6 13379855 13379952 -175899602 + MIR SINE MIR 76 180 -82 1507 279 78 42 chr6 13380042 13380138 -175899416 - L2 LINE L2 0 3313 3222 1242 121 0 0 chr6 13380138 13380312 -175899242 + L1PA16 LINE L1 5979 6152 -14 1507 279 78 42 chr6 13380312 13381090 -175898464 - L2 LINE L2 -91 3222 2411 201 226 77 29 chr6 13381358 13381428 -175898126 - MIR SINE MIR -63 145 79 221 300 54 39 chr6 13382369 13382499 -175897055 + MIR3 SINE MIR 4 135 -73 330 26 0 0 chr6 13382912 13382951 -175896603 + (CA)n Simple_repeat Simple_repeat 2 40 0 570 270 115 40 chr6 13383139 13383339 -175896215 + MIR SINE MIR 48 262 0 180 209 47 0 chr6 13383850 13383893 -175895661 - L2 LINE L2 -15 3257 3213 26 0 0 0 chr6 13384396 13384422 -175895132 + AT_rich Low_complexity Low_complexity 1 26 0 290 217 19 28 chr6 13385007 13385113 -175894441 + T-rich Low_complexity Low_complexity 1 105 0 249 57 0 0 chr6 13387648 13387683 -175891871 + (CA)n Simple_repeat Simple_repeat 2 36 0 1495 168 58 45 chr6 13387868 13388160 -175891394 - AluJo SINE Alu -16 296 1 224 251 99 89 chr6 13389192 13389383 -175890171 + MIR SINE MIR 14 206 -56 2323 236 71 24 chr6 13390289 13390633 -175888921 + L1ME2 LINE L1 5069 5396 -768 2014 145 0 0 chr6 13390633 13390929 -175888625 - AluJb SINE Alu -16 296 1 2323 236 71 24 chr6 13390929 13391566 -175887988 + L1ME2 LINE L1 5396 6100 -64 936 300 53 34 chr6 13391580 13392106 -175887448 + L1ME LINE L1 7 542 -5528 974 259 44 33 chr6 13392110 13392729 -175886825 + L1ME LINE L1 589 1192 -4888 234 227 13 13 chr6 13392725 13392800 -175886754 + L1MC5 LINE L1 7843 7917 -44 * 2144 111 11 0 chr6 13394742 13395063 -175884491 + AluSx SINE Alu 1 324 0 590 322 74 41 chr6 13395302 13395842 -175883712 + HAL1 LINE L1 154 711 -1796 526 239 111 86 chr6 13395951 13396149 -175883405 - MLT1J1 LTR MaLR -135 311 105 2427 93 0 13 chr6 13396149 13396461 -175883093 - AluSx SINE Alu -4 308 1 526 239 111 86 chr6 13396461 13396496 -175883058 - MLT1J1 LTR MaLR -341 105 72 262 261 94 11 chr6 13396642 13396822 -175882732 + HAL1 LINE L1 1003 1197 -1310 932 264 64 55 chr6 13396845 13397059 -175882495 + HAL1 LINE L1 1506 1716 -791 2759 26 0 0 chr6 13397059 13397372 -175882182 + AluYb8 SINE Alu 1 313 -5 932 264 64 55 chr6 13397372 13397668 -175881886 + HAL1 LINE L1 1716 2026 -481 843 131 6 86 chr6 13397668 13397713 -175881841 + L1PB2 LINE L1 5991 6038 -113 2001 108 15 0 chr6 13397713 13397982 -175881572 + AluSg SINE Alu 22 294 -16 843 131 6 86 chr6 13397982 13398111 -175881443 + L1PB2 LINE L1 6038 6151 0 932 264 64 55 chr6 13398111 13398221 -175881333 + HAL1 LINE L1 2026 2133 -374 1127 286 94 24 chr6 13398251 13398719 -175880835 - MLT1E LTR MaLR -92 501 1 401 222 57 57 chr6 13398806 13398982 -175880572 + HAL1 LINE L1 2225 2400 -107 31 26 0 0 chr6 13399028 13399066 -175880488 + AT_rich Low_complexity Low_complexity 1 38 0 1024 149 0 24 chr6 13399125 13399293 -175880261 + AluSg/x SINE Alu 122 285 -27 311 233 113 75 chr6 13400218 13400351 -175879203 - MIR SINE MIR -55 153 16 25 0 0 0 chr6 13400403 13400428 -175879126 + AT_rich Low_complexity Low_complexity 1 25 0 2418 170 15 37 chr6 13400447 13400982 -175878572 + L1MB8 LINE L1 5654 6176 -2 858 110 26 0 chr6 13401360 13401501 -175878053 - THE1C LTR MaLR 0 375 243 723 22 11 0 chr6 13401502 13401593 -175877961 - L1PA4 LINE L1 -199 5955 5864 1666 34 24 0 chr6 13401593 13401789 -175877765 + L1PA4 LINE L1 5942 6154 -1 811 131 91 107 chr6 13401794 13402046 -175877508 - THE1C LTR MaLR -127 248 1 254 278 0 0 chr6 13402060 13402114 -175877440 - L2 LINE L2 -16 3256 3203 319 329 7 7 chr6 13403359 13403499 -175876055 + (TA)n Simple_repeat Simple_repeat 1 140 0 734 265 22 0 chr6 13403622 13403807 -175875747 + MIR SINE MIR 70 258 -4 212 178 44 0 chr6 13403868 13403913 -175875641 + (TG)n Simple_repeat Simple_repeat 2 48 0 * 219 204 20 0 chr6 13403884 13403933 -175875621 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 0 0 0 chr6 13404105 13404133 -175875421 + (TA)n Simple_repeat Simple_repeat 1 28 0 2707 120 24 54 chr6 13404147 13404609 -175874945 + L1MA9 LINE L1 5789 6263 -49 1680 185 21 0 chr6 13404609 13404949 -175874605 + L1MA6 LINE L1 5950 6296 -4 2707 120 24 54 chr6 13404949 13404976 -175874578 + L1MA9 LINE L1 6263 6263 -49 2287 109 3 0 chr6 13404976 13405279 -175874275 - AluSc SINE Alu -5 304 1 2707 120 24 54 chr6 13405279 13405328 -175874226 + L1MA9 LINE L1 6263 6312 0 4101 137 19 11 chr6 13405461 13406155 -175873399 + L1PA16 LINE L1 5468 6166 0 351 262 24 0 chr6 13407196 13407280 -175872274 + MIR SINE MIR 64 149 -113 684 67 0 0 chr6 13408525 13408615 -175870939 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 643 180 117 0 chr6 13408615 13408743 -175870811 - FAM SINE Alu -31 154 12 2304 105 0 3 chr6 13408942 13409248 -175870306 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr6 13409248 13409269 -175870285 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 13409871 13409906 -175869648 + AT_rich Low_complexity Low_complexity 1 35 0 2062 127 0 0 chr6 13410037 13410354 -175869200 + AluSg SINE Alu 1 317 0 2062 147 0 19 chr6 13411318 13411631 -175867923 - AluJo SINE Alu -5 307 1 308 235 0 12 chr6 13412595 13412676 -175866878 + MER116 DNA Mariner 1 80 0 225 0 0 0 chr6 13412881 13412906 -175866648 + (A)n Simple_repeat Simple_repeat 1 25 0 8898 102 6 3 chr6 13412906 13415384 -175864170 - L1PA8A LINE L1 -27 6104 3620 704 202 38 11 chr6 13415635 13415818 -175863736 + MER53 DNA DNA 2 189 0 250 273 61 10 chr6 13415823 13415922 -175863632 - MER117 DNA MER1_type -91 106 3 24 85 0 0 chr6 13417171 13417230 -175862324 + AT_rich Low_complexity Low_complexity 1 59 0 551 291 45 17 chr6 13417381 13417560 -175861994 - MIR SINE MIR -51 211 28 391 293 87 41 chr6 13417560 13417952 -175861602 - L1ME4a LINE L1 -206 5915 5506 887 238 0 0 chr6 13418987 13419159 -175860395 + AluJb SINE Alu 115 286 -26 1595 50 0 0 chr6 13419427 13419626 -175859928 + L1PA7 LINE L1 5950 6148 -6 321 276 105 20 chr6 13419777 13419929 -175859625 + L1ME4a LINE L1 5956 6120 -1 2462 233 55 25 chr6 13419942 13421201 -175858353 - L1ME2 LINE L1 -7 6157 4857 2168 105 7 17 chr6 13421212 13421508 -175858046 + AluSc SINE Alu 1 293 -16 5083 75 3 1 chr6 13421597 13422266 -175857288 - L1PA7 LINE L1 -3 6151 5482 405 293 66 98 chr6 13422346 13422608 -175856946 + L3 LINE CR1 1250 1501 -76 8802 74 5 0 chr6 13422608 13424573 -175854981 + L1PA7 LINE L1 4199 6164 0 405 293 66 98 chr6 13424573 13424644 -175854910 + L3 LINE CR1 1501 1573 -4 26 0 0 0 chr6 13425159 13425185 -175854369 + AT_rich Low_complexity Low_complexity 1 26 0 636 283 72 45 chr6 13425305 13425542 -175854012 + MLT1H LTR MaLR 9 259 -290 2131 153 80 10 chr6 13425542 13425942 -175853612 + MSTA LTR MaLR 1 428 0 636 283 72 45 chr6 13425942 13426036 -175853518 + MLT1H LTR MaLR 259 349 -200 202 299 47 0 chr6 13427283 13427410 -175852144 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 21 0 0 0 chr6 13427506 13427527 -175852027 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 6 56 chr6 13427605 13427929 -175851625 - AluJb SINE Alu 0 312 5 242 326 51 25 chr6 13429078 13429274 -175850280 + L1MC4a LINE L1 5743 5943 -1865 457 268 49 19 chr6 13429344 13429674 -175849880 - L1MEd LINE L1 -4865 1254 1010 206 183 17 17 chr6 13430137 13430197 -175849357 + A-rich Low_complexity Low_complexity 4 63 0 562 293 12 35 chr6 13430728 13430987 -175848567 + HAL1 LINE L1 115 367 -2140 * 3663 159 58 25 chr6 13430979 13431785 -175847769 + L1MB7 LINE L1 5352 6184 0 713 80 10 0 chr6 13431794 13431894 -175847660 + L1PA7 LINE L1 6051 6151 -3 1279 266 51 27 chr6 13431937 13432449 -175847105 + HAL1 LINE L1 1356 1879 -628 291 130 0 0 chr6 13432829 13432883 -175846671 - Alu SINE Alu -2 300 247 924 149 0 14 chr6 13432883 13433031 -175846523 - AluJo SINE Alu -166 146 1 1680 141 6 74 chr6 13433099 13433411 -175846143 + AluJb SINE Alu 1 291 -21 198 0 0 0 chr6 13433411 13433433 -175846121 + (GA)n Simple_repeat Simple_repeat 2 23 0 397 181 21 0 chr6 13434131 13434225 -175845329 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 898 112 22 17 chr6 13434237 13434416 -175845138 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1965 239 26 24 chr6 13434490 13435030 -175844524 + MER77 LTR ERV1 58 598 -7 836 305 31 42 chr6 13435286 13435831 -175843723 + HAL1b LINE L1 434 972 -376 611 249 40 12 chr6 13435883 13436056 -175843498 - MIR SINE MIR -26 236 59 366 263 88 5 chr6 13436113 13436318 -175843236 + HAL1b LINE L1 1074 1295 -53 31 0 0 0 chr6 13436349 13436380 -175843174 + AT_rich Low_complexity Low_complexity 1 31 0 343 329 93 23 chr6 13436420 13436730 -175842824 + L1ME4a LINE L1 5784 6115 -6 342 280 19 9 chr6 13437128 13437235 -175842319 + MER5A DNA MER1_type 9 116 -73 30 83 0 0 chr6 13437802 13437874 -175841680 + AT_rich Low_complexity Low_complexity 1 72 0 192 232 89 0 chr6 13438217 13438273 -175841281 - MIR SINE MIR -114 148 88 302 218 73 73 chr6 13438455 13438579 -175840975 + L1ME2 LINE L1 5950 6073 -91 226 186 113 41 chr6 13438584 13438681 -175840873 + L1MC4 LINE L1 7924 8027 -15 27 62 0 0 chr6 13438690 13438738 -175840816 + AT_rich Low_complexity Low_complexity 1 48 0 2385 84 3 3 chr6 13439179 13439489 -175840065 - AluSx SINE Alu 0 312 3 2195 117 10 0 chr6 13439777 13440084 -175839470 + AluSx SINE Alu 1 310 -2 2236 86 7 0 chr6 13440880 13441184 -175838370 - AluSx SINE Alu -6 306 1 21 0 0 0 chr6 13442171 13442192 -175837362 + AT_rich Low_complexity Low_complexity 1 21 0 535 299 90 80 chr6 13442264 13442535 -175837019 + L1M4 LINE L1 2141 2408 -3738 2331 100 0 0 chr6 13442535 13442834 -175836720 + AluSg SINE Alu 1 299 -11 535 299 90 80 chr6 13442834 13443272 -175836282 + L1M4 LINE L1 2408 2857 -3289 248 163 73 49 chr6 13443383 13443506 -175836048 + Charlie7 DNA MER1_type 2420 2545 -67 1375 221 22 56 chr6 13443571 13443925 -175835629 - MLT1C LTR MaLR 0 467 130 2860 3 0 0 chr6 13443925 13444234 -175835320 - AluYa5 SINE Alu -2 309 1 1375 221 22 56 chr6 13444234 13444328 -175835226 - MLT1C LTR MaLR -337 130 34 186 103 0 0 chr6 13445649 13445678 -175833876 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 171 49 0 chr6 13445682 13445723 -175833831 - L2 LINE L2 -38 3234 3192 345 348 15 7 chr6 13446234 13446369 -175833185 + HAL1b LINE L1 454 589 -759 29 0 0 0 chr6 13446805 13446834 -175832720 + AT_rich Low_complexity Low_complexity 1 29 0 258 317 49 54 chr6 13446917 13447122 -175832432 + LTR67 LTR ERVL 114 317 -240 2735 73 98 5 chr6 13447125 13447535 -175832019 + LTR7 LTR ERV1 1 448 -2 16198 99 30 12 chr6 13447537 13450717 -175828837 + HERVH LTR ERV1 1 2987 -4726 822 142 20 0 chr6 13450711 13450859 -175828695 + HERVH LTR ERV1 3140 3290 -4423 * 3266 95 4 4 chr6 13450858 13451352 -175828202 + HERVH LTR ERV1 3500 3993 -3720 4326 125 0 1 chr6 13451354 13452017 -175827537 + HERVH LTR ERV1 4488 5149 -2564 1371 116 19 0 chr6 13452018 13452234 -175827320 + HERVH LTR ERV1 5600 5819 -1894 2268 93 48 13 chr6 13452234 13452611 -175826943 + HERVH LTR ERV1 7324 7713 0 1885 102 8 8 chr6 13452611 13452970 -175826584 + LTR7 LTR ERV1 1 448 -2 356 341 62 0 chr6 13454158 13454287 -175825267 - L2 LINE L2 -2 3270 3134 2195 117 0 19 chr6 13454458 13454766 -175824788 + AluSg SINE Alu 1 302 -8 222 137 59 0 chr6 13454781 13454832 -175824722 + A-rich Low_complexity Low_complexity 2 55 0 238 302 220 17 chr6 13455434 13455907 -175823647 - L2 LINE L2 -1018 2296 1728 2385 113 5 35 chr6 13456651 13457024 -175822530 + THE1B LTR MaLR 3 364 0 606 122 0 0 chr6 13457090 13457188 -175822366 + (TCCC)n Simple_repeat Simple_repeat 1 98 0 1425 182 35 42 chr6 13457188 13457474 -175822080 - AluJo SINE Alu -28 284 1 2242 100 0 0 chr6 13458750 13459031 -175820523 + AluSx SINE Alu 5 288 -24 234 0 0 0 chr6 13459031 13459057 -175820497 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 637 130 0 37 chr6 13459359 13459467 -175820087 + FLAM_A SINE Alu 20 123 -19 847 209 13 0 chr6 13459864 13460049 -175819505 - AluJb SINE Alu 0 309 123 252 0 0 0 chr6 13460057 13460085 -175819469 + (TA)n Simple_repeat Simple_repeat 2 29 0 899 143 7 0 chr6 13460095 13460235 -175819319 - FLAM_C SINE Alu 0 143 3 359 276 176 19 chr6 13460500 13460761 -175818793 - L2 LINE L2 -731 2583 2282 318 132 0 0 chr6 13460764 13460817 -175818737 + (CA)n Simple_repeat Simple_repeat 2 54 0 268 200 44 33 chr6 13460824 13460914 -175818640 + L1MC4 LINE L1 6613 6703 -1339 226 156 0 0 chr6 13460894 13460939 -175818615 - L1MC4 LINE L1 -1339 6703 6659 * 369 357 31 16 chr6 13461007 13461262 -175818292 - L2 LINE L2 -1063 2251 1993 1916 154 3 0 chr6 13462079 13462364 -175817190 + AluSx SINE Alu 1 286 -26 393 338 49 63 chr6 13462618 13462902 -175816652 + HAL1b LINE L1 63 342 -1006 873 136 21 29 chr6 13463511 13463651 -175815903 - FRAM SINE Alu -18 158 20 598 175 9 0 chr6 13463678 13463792 -175815762 - MER20 DNA MER1_type -48 171 57 2435 83 62 10 chr6 13463792 13464176 -175815378 + MLT2A1 LTR ERVL 1 404 -40 372 150 0 0 chr6 13464176 13464256 -175815298 + (TA)n Simple_repeat Simple_repeat 2 81 0 211 234 11 11 chr6 13464378 13464472 -175815082 + (TA)n Simple_repeat Simple_repeat 1 94 0 2152 98 4 0 chr6 13464493 13464767 -175814787 + AluSx SINE Alu 16 290 -22 230 271 10 52 chr6 13464767 13464863 -175814691 + L1MC5 LINE L1 6647 6738 -1223 2191 116 10 7 chr6 13464866 13465176 -175814378 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr6 13465185 13465212 -175814342 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1740 181 3 26 chr6 13465217 13465526 -175814028 + AluJo SINE Alu 3 304 -8 1818 220 55 80 chr6 13465527 13466341 -175813213 + L1MC5 LINE L1 6735 7528 -433 250 241 65 9 chr6 13466497 13466605 -175812949 + L1ME3A LINE L1 6027 6140 -30 995 194 0 0 chr6 13466608 13466788 -175812766 - AluJo SINE Alu -6 306 127 316 326 170 0 chr6 13466912 13467136 -175812418 - L2 LINE L2 -1414 1900 1639 2302 231 111 56 chr6 13467138 13467832 -175811722 + L1MC4 LINE L1 6935 7708 -334 3667 122 2 24 chr6 13467832 13468420 -175811134 + L1PA14 LINE L1 5578 6152 -9 2302 231 111 56 chr6 13468420 13468775 -175810779 + L1MC4 LINE L1 7708 8042 0 192 351 33 26 chr6 13468781 13468932 -175810622 - L2 LINE L2 -1692 1622 1471 401 47 0 31 chr6 13471809 13471873 -175807681 - L1PA7 LINE L1 0 6154 6093 300 53 0 0 chr6 13471899 13471937 -175807617 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 220 286 54 0 chr6 13472931 13472987 -175806567 - L2 LINE L2 0 3272 3214 271 321 15 30 chr6 13475434 13475568 -175803986 - L2 LINE L2 -954 2360 2229 690 243 18 72 chr6 13475576 13475821 -175803733 - MIR SINE MIR 0 262 30 254 290 129 32 chr6 13476009 13476164 -175803390 + MIR SINE MIR 82 251 -11 1301 206 83 31 chr6 13476480 13476806 -175802748 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr6 13477259 13477298 -175802256 + AT_rich Low_complexity Low_complexity 1 39 0 3748 29 9 0 chr6 13477323 13477766 -175801788 - L1PA3 LINE L1 0 6155 5709 2281 135 10 20 chr6 13477814 13478255 -175801299 + Tigger2 DNA MER2_type 3 2718 0 2282 109 0 0 chr6 13478629 13478931 -175800623 - AluY SINE Alu -9 302 1 25 31 0 0 chr6 13479059 13479091 -175800463 + AT_rich Low_complexity Low_complexity 1 32 0 578 265 12 18 chr6 13479143 13479309 -175800245 + MER5B DNA MER1_type 14 178 0 1095 199 5 24 chr6 13479439 13479650 -175799904 + AluJo SINE Alu 82 288 -24 22 80 0 0 chr6 13479650 13479700 -175799854 + AT_rich Low_complexity Low_complexity 1 50 0 341 164 87 39 chr6 13479701 13479805 -175799749 - MER5A DNA MER1_type -77 112 4 202 259 129 118 chr6 13479836 13480006 -175799548 - MER5B DNA MER1_type -3 175 4 283 337 89 11 chr6 13480568 13480758 -175798796 + L2 LINE L2 2184 2388 -926 188 386 79 35 chr6 13480853 13481055 -175798499 + L2 LINE L2 2814 3024 -248 246 226 0 0 chr6 13482553 13482606 -175796948 - MER116 DNA Mariner -27 53 1 23 0 0 0 chr6 13482861 13482884 -175796670 + AT_rich Low_complexity Low_complexity 1 23 0 4220 202 27 14 chr6 13483753 13484803 -175794751 + L1MB3 LINE L1 4125 5187 -959 1111 158 14 38 chr6 13484803 13485012 -175794542 + AluJb SINE Alu 108 311 -1 690 123 29 14 chr6 13485013 13485151 -175794403 + GA-rich Low_complexity Low_complexity 4 143 0 5030 120 52 8 chr6 13485157 13486107 -175793447 + L1PA16 LINE L1 5180 6165 -1 423 241 25 49 chr6 13486151 13486198 -175793356 - L1MA10 LINE L1 -7 6327 6281 2870 214 63 18 chr6 13486198 13487113 -175792441 - L1ME1 LINE L1 -44 6122 5173 1317 181 16 0 chr6 13487234 13487482 -175792072 + L1MB3 LINE L1 5447 5698 -473 488 184 10 0 chr6 13487482 13487566 -175791988 + L1MB3 LINE L1 6076 6179 -4 203 373 119 16 chr6 13487731 13487857 -175791697 + MIR3 SINE MIR 41 179 -29 302 285 93 14 chr6 13488095 13488235 -175791319 + MIR SINE MIR 71 220 -42 395 263 188 25 chr6 13488289 13488449 -175791105 - MER5A DNA MER1_type 0 189 4 190 329 13 13 chr6 13488619 13488695 -175790859 - MIR3 SINE MIR -52 156 81 254 287 102 9 chr6 13490505 13490613 -175788941 + L2 LINE L2 3191 3308 -5 860 153 0 45 chr6 13490714 13490871 -175788683 - AluJb SINE Alu -26 286 137 357 274 0 0 chr6 13491172 13491256 -175788298 - MIR SINE MIR -1 261 178 183 255 43 0 chr6 13491517 13491564 -175787990 - MIR SINE MIR -109 153 105 329 107 0 18 chr6 13492428 13492484 -175787070 + (GA)n Simple_repeat Simple_repeat 2 56 0 669 159 9 0 chr6 13493523 13493630 -175785924 + FLAM_C SINE Alu 11 118 -25 24 0 0 0 chr6 13494480 13494504 -175785050 + AT_rich Low_complexity Low_complexity 1 24 0 2245 126 3 3 chr6 13494954 13495264 -175784290 - AluSx SINE Alu -2 310 1 186 43 0 0 chr6 13495523 13495546 -175784008 + (TC)n Simple_repeat Simple_repeat 1 23 0 247 271 14 14 chr6 13500670 13500740 -175778814 + MER5A DNA MER1_type 85 154 -35 451 234 27 0 chr6 13500877 13500988 -175778566 + MIR SINE MIR 128 241 -21 2190 100 14 0 chr6 13501059 13501348 -175778206 + AluSx SINE Alu 1 293 -19 240 292 25 67 chr6 13503085 13503205 -175776349 + MER5A DNA MER1_type 73 187 -2 546 200 200 52 chr6 13503231 13503386 -175776168 + MER5A DNA MER1_type 9 186 -3 1585 159 32 28 chr6 13503439 13503722 -175775832 - AluJo SINE Alu -8 304 21 532 245 28 14 chr6 13503724 13503867 -175775687 + MER5B DNA MER1_type 34 178 0 2250 106 3 16 chr6 13504006 13504317 -175775237 + AluSx SINE Alu 6 312 0 343 369 58 15 chr6 13504320 13504526 -175775028 - MIR SINE MIR -28 234 20 180 209 0 75 chr6 13505336 13505403 -175774151 + L2 LINE L2 3003 3064 -208 406 358 31 0 chr6 13505466 13505628 -175773926 + MIR SINE MIR 58 224 -38 33 43 0 0 chr6 13505819 13505866 -175773688 + AT_rich Low_complexity Low_complexity 1 47 0 239 374 108 36 chr6 13505911 13506272 -175773282 + L3b LINE CR1 1148 1534 -49 222 122 41 20 chr6 13506969 13507018 -175772536 + T-rich Low_complexity Low_complexity 2 51 0 204 280 0 0 chr6 13507458 13507508 -175772046 + GA-rich Low_complexity Low_complexity 1 50 0 1782 171 7 23 chr6 13507985 13508295 -175771259 + AluJo SINE Alu 1 305 -7 26 0 0 0 chr6 13508370 13508396 -175771158 + AT_rich Low_complexity Low_complexity 1 26 0 608 285 21 21 chr6 13508437 13508623 -175770931 + MIR SINE MIR 6 191 -71 323 255 9 9 chr6 13508821 13508927 -175770627 - MER113 DNA MER1_type? -413 108 3 352 359 93 40 chr6 13509498 13510078 -175769476 - L2 LINE L2 -452 2862 2252 2609 84 24 16 chr6 13510561 13510942 -175768612 - L1PA13 LINE L1 -11 6152 5769 423 0 0 0 chr6 13510942 13510989 -175768565 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2275 86 0 0 chr6 13510989 13511269 -175768285 - AluSg SINE Alu -30 280 1 382 309 48 17 chr6 13511534 13511715 -175767839 - MIR SINE MIR -37 225 41 2632 77 0 0 chr6 13512308 13512645 -175766909 - L1PA8A LINE L1 -3 6128 5792 303 261 136 11 chr6 13513160 13513248 -175766306 - MIR3 SINE MIR -1 207 109 406 313 129 5 chr6 13513259 13513460 -175766094 - MIR SINE MIR -6 256 31 187 307 59 59 chr6 13513485 13513586 -175765968 - MIR SINE MIR -91 117 17 439 270 61 61 chr6 13514066 13514296 -175765258 - MIR SINE MIR -6 256 27 370 358 150 9 chr6 13514316 13514542 -175765012 - MIR SINE MIR -4 258 1 2235 212 79 8 chr6 13514905 13515409 -175764145 - MLT1F LTR MaLR -2 540 1 27 49 0 0 chr6 13516654 13516695 -175762859 + AT_rich Low_complexity Low_complexity 1 41 0 273 83 0 0 chr6 13516755 13516791 -175762763 + U2 snRNA snRNA 1 36 -152 240 111 0 0 chr6 13516943 13516979 -175762575 + (TA)n Simple_repeat Simple_repeat 1 36 0 1757 170 68 0 chr6 13517000 13517323 -175762231 - MER7A DNA MER2_type 0 346 4 234 91 0 0 chr6 13517354 13517387 -175762167 + (CA)n Simple_repeat Simple_repeat 2 34 0 1500 254 96 83 chr6 13517466 13517538 -175762016 - L1MC4 LINE L1 -121 7921 7851 1819 166 36 10 chr6 13517538 13517840 -175761714 - AluJo SINE Alu -2 310 1 1500 254 96 83 chr6 13517840 13518536 -175761018 - L1MC4 LINE L1 -191 7851 7135 2195 110 0 7 chr6 13518536 13518845 -175760709 + AluSq SINE Alu 1 307 -6 1500 254 96 83 chr6 13518845 13519068 -175760486 - L1MC4 LINE L1 -907 7135 6916 22 0 0 0 chr6 13519478 13519500 -175760054 + AT_rich Low_complexity Low_complexity 1 22 0 1488 178 14 21 chr6 13519500 13519786 -175759768 - AluJo SINE Alu -17 295 12 1507 244 135 34 chr6 13519800 13520673 -175758881 - L1ME2 LINE L1 0 6164 5176 203 278 12 118 chr6 13522118 13522287 -175757267 + MIR3 SINE MIR 37 187 -21 3541 106 32 4 chr6 13522326 13522863 -175756691 + MER41A LTR ERV1 3 554 0 221 328 74 70 chr6 13522975 13523122 -175756432 - MIR SINE MIR 0 262 112 2458 70 0 7 chr6 13523122 13523423 -175756131 - AluSx SINE Alu -13 299 1 221 328 74 70 chr6 13523423 13523519 -175756035 - MIR SINE MIR -150 112 18 650 216 0 0 chr6 13523929 13524045 -175755509 + FLAM_A SINE Alu 1 116 -17 629 258 121 31 chr6 13524067 13524578 -175754976 + L1M4 LINE L1 2961 3517 -2629 567 299 13 47 chr6 13524602 13525068 -175754486 + L1M4 LINE L1 3572 4160 -1986 720 144 18 0 chr6 13525133 13525244 -175754310 - FRAM SINE Alu -27 149 37 2183 107 3 0 chr6 13575262 13575551 -175704003 - AluSx SINE Alu -22 290 1 1242 128 0 0 chr6 13575613 13575793 -175703761 - AluSg SINE Alu -12 300 121 693 109 42 34 chr6 13575846 13575965 -175703589 - AluSg SINE Alu -181 129 10 478 141 0 0 chr6 13575967 13576045 -175703509 - AluS SINE Alu -4 307 230 1564 102 0 0 chr6 13576045 13576242 -175703312 - AluSc SINE Alu -112 197 1 1919 174 0 0 chr6 13576253 13576547 -175703007 - AluJb SINE Alu -18 294 1 708 209 20 70 chr6 13577187 13577388 -175702166 - MLT1J LTR MaLR -82 429 239 184 224 35 17 chr6 13577665 13577723 -175701831 - MIR SINE MIR -66 142 84 1872 222 23 13 chr6 13578155 13578655 -175700899 + L1ME1 LINE L1 5672 6334 0 315 213 133 100 chr6 13578877 13579027 -175700527 + MIR SINE MIR 59 213 -49 2017 136 3 0 chr6 13579079 13579374 -175700180 - AluSx SINE Alu -16 296 1 673 220 52 47 chr6 13579473 13579705 -175699849 + L2 LINE L2 3008 3240 -73 841 73 28 0 chr6 13579727 13579836 -175699718 + AluSp/q SINE Alu 184 295 -18 25 0 0 0 chr6 13580866 13580891 -175698663 + AT_rich Low_complexity Low_complexity 1 25 0 210 71 0 0 chr6 13581536 13581564 -175697990 + (CA)n Simple_repeat Simple_repeat 2 29 0 2335 114 0 0 chr6 13581649 13581955 -175697599 + AluSx SINE Alu 1 306 -6 517 212 163 22 chr6 13582059 13582243 -175697311 - MIR SINE MIR 0 262 53 2347 121 0 0 chr6 13582333 13582639 -175696915 - AluSx SINE Alu -6 306 1 1570 220 34 63 chr6 13582771 13583248 -175696306 + MLT1C LTR MaLR 5 467 0 21 0 0 0 chr6 13583823 13583844 -175695710 + AT_rich Low_complexity Low_complexity 1 21 0 1977 143 0 23 chr6 13583950 13584258 -175695296 + AluSx SINE Alu 1 301 -11 455 312 23 6 chr6 13584314 13584487 -175695067 + MIR SINE MIR 41 216 -46 934 202 22 0 chr6 13585067 13585250 -175694304 - MER5A DNA MER1_type -2 187 1 535 337 93 11 chr6 13585744 13586014 -175693540 + MLT1J LTR MaLR 43 334 -177 235 48 0 0 chr6 13586169 13586211 -175693343 - AluSx SINE Alu 0 303 262 1691 95 0 5 chr6 13586213 13586424 -175693130 - AluSx SINE Alu -102 210 1 1560 195 3 10 chr6 13586849 13587147 -175692407 + AluJo SINE Alu 1 296 -16 25 0 0 0 chr6 13587206 13587231 -175692323 + AT_rich Low_complexity Low_complexity 1 25 0 845 260 40 37 chr6 13587795 13588091 -175691463 - LTR16A1 LTR ERVL -2 455 159 465 179 0 11 chr6 13588165 13588260 -175691294 - MER5B DNA MER1_type 0 178 85 345 140 0 0 chr6 13588546 13588603 -175690951 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 586 301 98 5 chr6 13589543 13589746 -175689808 + MIR SINE MIR 11 232 -30 354 243 29 18 chr6 13589946 13590091 -175689463 - MER91A DNA MER1_type -2 188 3 205 317 168 18 chr6 13590150 13590317 -175689237 - L2 LINE L2 -213 3059 2868 2459 80 0 3 chr6 13592398 13592699 -175686855 - AluY SINE Alu -10 301 2 192 216 0 0 chr6 13592948 13592999 -175686555 + (TA)n Simple_repeat Simple_repeat 2 52 0 339 353 7 20 chr6 13594919 13595069 -175684485 - MIR3 SINE MIR -38 170 23 222 174 0 0 chr6 13595326 13595372 -175684182 + CT-rich Low_complexity Low_complexity 1 46 0 692 177 23 6 chr6 13595385 13595560 -175683994 + CT-rich Low_complexity Low_complexity 1 178 0 1113 94 6 11 chr6 13595562 13595742 -175683812 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 197 317 69 0 chr6 13595773 13595874 -175683680 + L2 LINE L2 3189 3296 -17 186 256 122 49 chr6 13595921 13596003 -175683551 + MIR SINE MIR 7 94 -168 520 270 132 0 chr6 13596005 13596157 -175683397 - MER96 DNA MER1_type -3 172 1 209 311 112 54 chr6 13597077 13597318 -175682236 - MIR SINE MIR 0 262 8 2382 100 0 0 chr6 13597752 13598052 -175681502 + AluSg SINE Alu 1 300 -10 839 111 0 0 chr6 13598073 13598181 -175681373 + AluJb SINE Alu 9 116 -196 21 0 0 0 chr6 13598193 13598214 -175681340 + AT_rich Low_complexity Low_complexity 1 21 0 1503 189 18 18 chr6 13599442 13599722 -175679832 - AluJo SINE Alu -32 280 1 368 325 128 47 chr6 13600571 13600869 -175678685 - L2 LINE L2 0 3272 2951 325 164 44 214 chr6 13601044 13601203 -175678351 - L1MC2 LINE L1 -8 6336 6205 594 221 138 28 chr6 13601506 13601657 -175677897 + LTR41 LTR ERVL 1 177 -596 2197 131 0 3 chr6 13601657 13601969 -175677585 - AluSx SINE Alu -1 311 1 594 221 138 28 chr6 13601969 13601998 -175677556 + LTR41 LTR ERVL 177 201 -572 288 165 78 58 chr6 13602405 13602508 -175677046 + LTR41 LTR ERVL 654 758 -15 327 334 150 3 chr6 13602520 13602873 -175676681 - L2 LINE L2 -875 2439 2035 1937 105 9 93 chr6 13602899 13603233 -175676321 + AluSx SINE Alu 5 310 -2 1964 156 0 7 chr6 13604220 13604522 -175675032 - AluJb SINE Alu -12 300 1 2259 95 0 7 chr6 13604893 13605212 -175674342 + AluSx SINE Alu 1 317 0 255 149 0 43 chr6 13606397 13606444 -175673110 + MIR SINE MIR 102 146 -116 226 316 21 11 chr6 13608558 13608653 -175670901 + L2 LINE L2 2985 3080 -192 605 305 26 4 chr6 13608906 13609139 -175670415 + L3 LINE CR1 1195 1432 -145 281 300 111 67 chr6 13610218 13610398 -175669156 + MLT1K LTR MaLR 61 248 -340 320 231 132 50 chr6 13610476 13610597 -175668957 + MLT1K LTR MaLR 361 491 -97 280 296 88 32 chr6 13611637 13611762 -175667792 + L2 LINE L2 3137 3268 -4 532 249 55 12 chr6 13611981 13612146 -175667408 + MER5B DNA MER1_type 4 175 -3 181 294 0 0 chr6 13612313 13612364 -175667190 - MIR SINE MIR -109 153 103 2078 95 56 7 chr6 13612642 13612927 -175666627 - AluSq SINE Alu -14 299 1 711 271 67 4 chr6 13613890 13614130 -175665424 - MIR SINE MIR 0 262 8 1947 159 0 0 chr6 13614757 13615052 -175664502 - AluSx SINE Alu -17 295 1 944 148 35 79 chr6 13615057 13615286 -175664268 - MER20 DNA MER1_type 0 219 1 2347 96 0 3 chr6 13615397 13615700 -175663854 + AluSx SINE Alu 1 302 -10 289 282 14 0 chr6 13615727 13615798 -175663756 + CT-rich Low_complexity Low_complexity 4 75 0 1571 155 0 20 chr6 13616491 13616743 -175662811 - AluJb SINE Alu -26 286 40 340 318 124 65 chr6 13617919 13619139 -175660415 - L2 LINE L2 -11 3261 1889 2582 87 0 3 chr6 13619139 13619494 -175660060 + L1PA7 LINE L1 5817 6170 0 340 318 124 65 chr6 13619494 13619870 -175659684 - L2 LINE L2 -1383 1889 1537 492 290 80 0 chr6 13621297 13621459 -175658095 + MER5B DNA MER1_type 1 175 -3 2433 93 0 3 chr6 13621710 13622022 -175657532 + AluSq SINE Alu 1 311 -2 449 198 21 21 chr6 13622137 13622233 -175657321 - L2 LINE L2 0 3272 3177 2096 130 0 0 chr6 13622570 13622870 -175656684 - AluSx SINE Alu -12 300 1 245 323 219 10 chr6 13623901 13624093 -175655461 + MIR SINE MIR 17 248 -14 505 262 76 17 chr6 13625221 13625393 -175654161 - MIR SINE MIR -51 211 30 1048 280 46 52 chr6 13626186 13626873 -175652681 - L2 LINE L2 -6 3307 2629 2420 120 3 15 chr6 13626873 13627214 -175652340 - MER1B DNA MER1_type 0 337 1 1048 280 46 52 chr6 13627214 13627282 -175652272 - L2 LINE L2 -684 2629 2562 442 136 0 23 chr6 13627379 13627467 -175652087 + (GAA)n Simple_repeat Simple_repeat 2 87 0 1576 171 20 13 chr6 13627904 13628202 -175651352 - AluJo SINE Alu -12 300 1 392 273 154 26 chr6 13628205 13628492 -175651062 + MLT1I LTR MaLR 80 448 -2 21 36 0 0 chr6 13628654 13628682 -175650872 + AT_rich Low_complexity Low_complexity 1 28 0 1157 198 70 113 chr6 13628747 13629097 -175650457 - MSTD LTR MaLR 0 396 65 2220 113 3 16 chr6 13629097 13629406 -175650148 - AluSx SINE Alu -7 305 1 1157 198 70 113 chr6 13629406 13629469 -175650085 - MSTD LTR MaLR -331 65 1 372 230 70 10 chr6 13629470 13629570 -175649984 + L2 LINE L2 3199 3304 -9 284 127 18 0 chr6 13630134 13630189 -175649365 + GA-rich Low_complexity Low_complexity 3 58 0 367 274 34 33 chr6 13630566 13630757 -175648797 + MIR SINE MIR 26 214 -48 2113 114 3 19 chr6 13631062 13631378 -175648176 - AluSx SINE Alu -1 311 1 267 93 0 0 chr6 13632343 13632386 -175647168 + (TG)n Simple_repeat Simple_repeat 2 44 0 204 40 0 0 chr6 13632421 13632446 -175647108 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2307 91 0 3 chr6 13632490 13632788 -175646766 + AluY SINE Alu 1 297 -14 339 239 0 0 chr6 13633017 13633088 -175646466 + (TATG)n Simple_repeat Simple_repeat 1 71 0 541 223 0 22 chr6 13633092 13633276 -175646278 + (TG)n Simple_repeat Simple_repeat 1 180 0 1951 148 0 7 chr6 13633676 13633981 -175645573 + AluSx SINE Alu 1 303 -9 193 242 0 76 chr6 13634360 13634426 -175645128 - MIR SINE MIR -46 216 156 207 328 137 27 chr6 13635121 13635383 -175644171 + L2 LINE L2 1918 2208 -1106 389 256 364 0 chr6 13635461 13635711 -175643843 - L2 LINE L2 -31 3282 2942 366 273 133 0 chr6 13636073 13636201 -175643353 - MIR SINE MIR -4 258 114 553 293 100 60 chr6 13636602 13636637 -175642917 + MIR SINE MIR 1 33 -229 1593 159 12 93 chr6 13636637 13636971 -175642583 + AluJb SINE Alu 1 307 -5 553 293 100 60 chr6 13636971 13637184 -175642370 + MIR SINE MIR 33 259 -3 303 292 230 19 chr6 13637380 13637541 -175642013 + MIR SINE MIR 23 217 -45 245 346 52 22 chr6 13638664 13638800 -175640754 + MIR3 SINE MIR 22 161 -47 198 337 35 23 chr6 13639026 13639112 -175640442 - L2 LINE L2 0 3272 3186 2098 203 74 34 chr6 13639997 13640495 -175639059 + MLT2B1 LTR ERVL 3 520 0 569 239 4 148 chr6 13640720 13640950 -175638604 + MIR SINE MIR 56 252 -10 413 226 235 0 chr6 13640984 13641086 -175638468 + MER91A DNA MER1_type 70 195 -1 187 265 121 36 chr6 13641693 13641776 -175637778 + MIR SINE MIR 34 123 -139 210 71 0 0 chr6 13642133 13642161 -175637393 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 358 252 226 0 chr6 13643021 13643136 -175636418 + MER5A DNA MER1_type 46 186 -3 806 243 15 10 chr6 13643154 13643356 -175636198 - MER58A DNA MER1_type -3 221 19 276 274 153 16 chr6 13643704 13643828 -175635726 + L2 LINE L2 3162 3302 -11 1720 168 10 26 chr6 13643876 13644185 -175635369 + AluJo SINE Alu 1 304 -8 542 139 0 10 chr6 13644185 13644286 -175635268 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 183 100 0 0 chr6 13644728 13644758 -175634796 + (TG)n Simple_repeat Simple_repeat 1 30 0 358 288 71 38 chr6 13644780 13645020 -175634534 - L1MC5 LINE L1 -36 7925 7678 358 239 18 37 chr6 13645002 13645111 -175634443 + L1MD3 LINE L1 6642 6748 -1247 189 74 0 0 chr6 13645135 13645162 -175634392 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 801 261 36 101 chr6 13645197 13645863 -175633691 + L1MC5 LINE L1 7000 7622 -339 205 175 123 18 chr6 13647126 13647183 -175632371 - L2 LINE L2 -1 3271 3209 231 303 15 0 chr6 13647235 13647301 -175632253 + L2 LINE L2 3190 3256 -16 2301 106 3 0 chr6 13648914 13649215 -175630339 - AluSc SINE Alu -7 302 1 314 301 49 21 chr6 13649647 13649790 -175629764 + MIR SINE MIR 90 236 -26 249 83 0 0 chr6 13651699 13651735 -175627819 + (CA)n Simple_repeat Simple_repeat 2 37 0 437 274 9 9 chr6 13652021 13652134 -175627420 + MER81 DNA DNA 1 113 -1 2455 84 0 0 chr6 13652483 13652794 -175626760 - AluY SINE Alu 0 311 1 807 189 18 18 chr6 13652842 13653006 -175626548 + MER5A DNA MER1_type 26 189 0 1483 198 103 21 chr6 13653691 13654030 -175625524 + MLT1A2 LTR MaLR 4 370 -4 295 248 105 0 chr6 13654160 13654265 -175625289 - MIR SINE MIR -116 146 31 200 289 44 0 chr6 13655215 13655305 -175624249 + (CATA)n Simple_repeat Simple_repeat 2 95 0 * 246 304 0 0 chr6 13655254 13655333 -175624221 + (TA)n Simple_repeat Simple_repeat 1 79 0 6690 57 12 7 chr6 13656374 13657184 -175622370 + L1PA7 LINE L1 5333 6146 -8 183 42 0 0 chr6 13657186 13657210 -175622344 + (ATG)n Simple_repeat Simple_repeat 1 24 0 350 42 21 0 chr6 13658347 13658395 -175621159 + (TG)n Simple_repeat Simple_repeat 2 50 0 1468 164 4 16 chr6 13658428 13658678 -175620876 - AluJo SINE Alu -61 251 5 392 336 69 0 chr6 13659120 13659251 -175620303 + L2 LINE L2 3132 3271 -1 180 346 26 13 chr6 13659247 13659325 -175620229 - MIR SINE MIR -100 108 30 * 192 77 0 0 chr6 13659471 13659497 -175620057 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2032 119 25 0 chr6 13659576 13659862 -175619692 - AluSc SINE Alu -15 294 2 2329 92 0 13 chr6 13660637 13660952 -175618602 + AluY SINE Alu 1 311 0 2050 160 8 22 chr6 13661376 13661733 -175617821 - L1PA16 LINE L1 -1 6165 5814 872 203 0 0 chr6 13661741 13661889 -175617665 - AluJo/FRAM SINE Alu -30 282 135 507 191 0 0 chr6 13661889 13661973 -175617581 - AluJ/FLAM SINE Alu -227 85 2 3528 129 18 9 chr6 13661980 13662633 -175616921 - L1PA16 LINE L1 -347 5819 5161 2437 112 44 19 chr6 13663308 13663674 -175615880 + THE1C LTR MaLR 1 375 0 415 280 137 17 chr6 13663793 13663968 -175615586 + MER117 DNA MER1_type 1 196 -1 345 312 89 25 chr6 13664619 13664776 -175614778 - MIR3 SINE MIR -31 177 11 2203 136 0 0 chr6 13665058 13665366 -175614188 + AluSx SINE Alu 1 308 -4 1563 208 89 51 chr6 13666186 13666634 -175612920 + MLT1C LTR MaLR 2 466 -1 378 321 19 12 chr6 13666753 13666915 -175612639 + MER117 DNA MER1_type 2 164 -33 21 0 0 0 chr6 13667318 13667339 -175612215 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 13669352 13669375 -175610179 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr6 13669881 13669908 -175609646 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1743 145 9 41 chr6 13670077 13670394 -175609160 + AluJb SINE Alu 2 308 -4 181 289 0 39 chr6 13670955 13671007 -175608547 - L2 LINE L2 -12 3260 3211 288 0 0 0 chr6 13671095 13671127 -175608427 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 253 359 11 0 chr6 13672593 13672685 -175606869 + L2 LINE L2 3188 3280 -33 1625 202 0 31 chr6 13672760 13673082 -175606472 - AluJo SINE Alu 0 312 1 273 313 72 15 chr6 13673182 13673281 -175606273 - MIR SINE MIR -102 106 16 189 147 0 0 chr6 13673688 13673722 -175605832 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 1728 163 13 35 chr6 13674350 13674663 -175604891 + AluJo SINE Alu 1 306 -6 29 0 0 0 chr6 13675085 13675114 -175604440 + AT_rich Low_complexity Low_complexity 1 29 0 399 292 140 39 chr6 13675952 13676130 -175603424 + MIR SINE MIR 66 261 -1 565 289 147 10 chr6 13678025 13678229 -175601325 + MIR SINE MIR 29 260 -2 180 77 0 0 chr6 13678241 13678267 -175601287 + (CAG)n Simple_repeat Simple_repeat 3 28 0 501 308 0 0 chr6 13678897 13679043 -175600511 + MLT1E LTR MaLR 10 155 -438 1314 190 123 3 chr6 13679102 13679386 -175600168 + MLT1E LTR MaLR 276 593 0 297 274 122 12 chr6 13679390 13679554 -175600000 - MIR SINE MIR -25 237 56 3968 134 13 2 chr6 13680032 13680628 -175598926 - LTR26 LTR ERV1 0 603 1 28 48 0 0 chr6 13681208 13681250 -175598304 + AT_rich Low_complexity Low_complexity 1 42 0 243 292 54 46 chr6 13681353 13681483 -175598071 + MIR SINE MIR 47 177 -85 384 328 109 30 chr6 13682950 13683352 -175596202 - L2 LINE L2 -6 3307 2874 2386 95 0 0 chr6 13683636 13683940 -175595614 + AluSx SINE Alu 1 304 -8 224 353 12 0 chr6 13684078 13684163 -175595391 - MIR SINE MIR -65 143 58 842 211 6 18 chr6 13685080 13685251 -175594303 - AluJo SINE Alu -23 289 121 199 193 18 53 chr6 13685252 13685309 -175594245 + MIR3 SINE MIR 125 179 -29 181 286 0 0 chr6 13685997 13686039 -175593515 - L2 LINE L2 -10 3303 3262 597 150 0 0 chr6 13686169 13686269 -175593285 + L1PB4 LINE L1 6047 6146 -10 27 51 0 17 chr6 13686270 13686299 -175593255 + AT_rich Low_complexity Low_complexity 1 29 -29 2255 81 3 24 chr6 13686299 13686596 -175592958 + AluSq SINE Alu 1 291 -22 27 51 0 17 chr6 13686596 13686625 -175592929 + AT_rich Low_complexity Low_complexity 29 58 0 995 109 0 27 chr6 13687036 13687219 -175592335 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1980 116 7 10 chr6 13687229 13687522 -175592032 - AluSx SINE Alu -20 292 1 1698 130 68 0 chr6 13688090 13688397 -175591157 - L1MA5 LINE L1 0 6300 5973 344 259 70 7 chr6 13688477 13688620 -175590934 - L1ME4a LINE L1 -2 6119 5968 261 0 0 0 chr6 13691264 13691293 -175588261 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 544 235 143 71 chr6 13691808 13691863 -175587691 - MIR SINE MIR 0 262 212 1714 171 0 23 chr6 13691863 13692049 -175587505 - AluJo SINE Alu -15 297 119 255 31 0 0 chr6 13692049 13692081 -175587473 + (TG)n Simple_repeat Simple_repeat 1 32 0 1714 171 0 23 chr6 13692081 13692198 -175587356 - AluJo SINE Alu -193 119 1 544 235 143 71 chr6 13692198 13692380 -175587174 - MIR SINE MIR -50 212 8 3561 143 2 0 chr6 13692714 13693240 -175586314 - MER1A DNA MER1_type 0 527 1 602 272 28 22 chr6 13693890 13694070 -175585484 - MIR SINE MIR -17 245 65 239 302 148 13 chr6 13695341 13695490 -175584064 + MIR SINE MIR 76 244 -18 189 0 0 0 chr6 13695690 13695711 -175583843 + (TC)n Simple_repeat Simple_repeat 2 22 0 2213 132 0 3 chr6 13695711 13696015 -175583539 - AluSx SINE Alu -9 303 1 216 200 0 36 chr6 13696589 13696644 -175582910 + GA-rich Low_complexity Low_complexity 5 57 0 2110 132 3 7 chr6 13696715 13697025 -175582529 + AluSc SINE Alu 1 309 0 306 312 23 25 chr6 13697555 13697715 -175581839 - MIR SINE MIR -65 143 34 722 246 200 43 chr6 13698618 13699042 -175580512 + MLT1H LTR MaLR 17 549 0 2435 74 0 0 chr6 13699072 13699370 -175580184 + AluY SINE Alu 1 298 -13 624 280 81 5 chr6 13699561 13699772 -175579782 - MIR SINE MIR 0 262 36 295 306 64 46 chr6 13702547 13702720 -175576834 - MIR3 SINE MIR -13 195 20 191 211 0 0 chr6 13702761 13702799 -175576755 - L2 LINE L2 -12 3301 3264 * 223 322 246 10 chr6 13702766 13702965 -175576589 - MIR SINE MIR -11 251 6 567 195 169 13 chr6 13703219 13703373 -175576181 - MER5A DNA MER1_type -3 186 9 21 36 0 0 chr6 13704096 13704124 -175575430 + AT_rich Low_complexity Low_complexity 1 28 0 356 353 83 29 chr6 13704598 13704839 -175574715 + MIR SINE MIR 1 254 -8 1963 160 22 3 chr6 13704842 13705205 -175574349 + L1MB5 LINE L1 5805 6174 0 351 204 23 68 chr6 13705614 13705746 -175573808 - L1ME3 LINE L1 0 6162 6037 281 47 23 0 chr6 13706841 13706884 -175572670 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 469 258 32 7 chr6 13707679 13707834 -175571720 + MER117 DNA MER1_type 2 160 -37 1603 159 0 54 chr6 13708007 13708303 -175571251 + AluJb SINE Alu 1 280 -32 591 208 0 0 chr6 13708321 13708451 -175571103 + GA-rich Low_complexity Low_complexity 3 132 0 23 0 0 0 chr6 13709843 13709866 -175569688 + AT_rich Low_complexity Low_complexity 1 23 0 182 364 0 0 chr6 13709947 13710002 -175569552 - L2 LINE L2 -3 3310 3256 658 164 17 0 chr6 13710580 13710696 -175568858 + FLAM_A SINE Alu 1 118 -15 2116 141 3 0 chr6 13711294 13711630 -175567924 + AluSx SINE Alu 1 337 0 1599 148 110 0 chr6 13712385 13712649 -175566905 - AluJb SINE Alu -19 293 1 22 0 0 0 chr6 13712651 13712673 -175566881 + AT_rich Low_complexity Low_complexity 1 22 0 981 171 15 29 chr6 13713315 13713520 -175566034 + MER20 DNA MER1_type 17 218 -1 539 191 33 82 chr6 13714459 13714642 -175564912 + MER104 DNA MER2_type 4 177 -3 201 167 17 33 chr6 13715053 13715113 -175564441 + (TTATA)n Simple_repeat Simple_repeat 5 63 0 248 208 0 0 chr6 13715512 13715560 -175563994 + MIR3 SINE MIR 155 202 -6 1774 165 3 13 chr6 13716282 13716591 -175562963 - AluJb SINE Alu -6 306 1 210 98 59 20 chr6 13718956 13719007 -175560547 + CT-rich Low_complexity Low_complexity 1 53 0 1053 273 78 80 chr6 13719008 13719125 -175560429 - L2 LINE L2 -2 3311 3195 270 0 0 0 chr6 13719125 13719155 -175560399 + (TG)n Simple_repeat Simple_repeat 2 31 0 1053 273 78 80 chr6 13719155 13719499 -175560055 - L2 LINE L2 -118 3195 2851 297 0 0 0 chr6 13720153 13720186 -175559368 + (CA)n Simple_repeat Simple_repeat 1 33 0 487 281 0 16 chr6 13720191 13720319 -175559235 + MIR SINE MIR 29 154 -108 583 196 140 22 chr6 13722027 13722186 -175557368 + MER5A DNA MER1_type 4 183 -6 1328 201 49 49 chr6 13722399 13722723 -175556831 + MER33 DNA MER1_type 1 324 0 360 324 0 10 chr6 13723091 13723193 -175556361 - MIR SINE MIR -140 122 22 205 363 0 0 chr6 13723199 13723279 -175556275 + L2 LINE L2 3188 3267 -5 2582 68 3 0 chr6 13724701 13725012 -175554542 - AluSp SINE Alu -1 312 1 242 239 0 68 chr6 13725056 13725144 -175554410 - L1MC4 LINE L1 -1350 6692 6611 582 331 97 21 chr6 13725144 13725434 -175554120 + L2 LINE L2 3001 3312 -1 221 331 94 31 chr6 13725425 13725585 -175553969 - MIR SINE MIR -3 259 90 * 225 296 111 0 chr6 13726093 13726174 -175553380 + L2 LINE L2 3177 3266 -6 236 309 10 10 chr6 13726456 13726553 -175553001 + LTR67 LTR ERVL 429 525 -32 2719 275 109 37 chr6 13726554 13727262 -175552292 - L2 LINE L2 -1 3312 2656 1371 45 0 0 chr6 13727262 13727416 -175552138 + L1PA3 LINE L1 5999 6152 -3 2719 275 109 37 chr6 13727416 13728114 -175551440 - L2 LINE L2 -657 2656 1809 2044 122 0 10 chr6 13729017 13729320 -175550234 - AluSx SINE Alu -12 300 1 191 267 22 0 chr6 13730049 13730094 -175549460 + MIR3 SINE MIR 152 197 -11 311 284 0 32 chr6 13732079 13732174 -175547380 + L1MC4 LINE L1 6612 6703 -1339 2146 85 22 0 chr6 13732186 13732457 -175547097 + AluSp SINE Alu 1 277 -36 194 0 0 37 chr6 13732459 13732486 -175547068 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 273 211 15 30 chr6 13732488 13732621 -175546933 + (TA)n Simple_repeat Simple_repeat 2 132 0 * 593 191 29 6 chr6 13732610 13732783 -175546771 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 581 153 0 53 chr6 13732836 13733025 -175546529 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 484 162 11 50 chr6 13733050 13733229 -175546325 + (TATATG)n Simple_repeat Simple_repeat 2 173 0 351 0 0 0 chr6 13736906 13736945 -175542609 + (CA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr6 13737640 13737667 -175541887 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2415 78 3 0 chr6 13737847 13738141 -175541413 - AluSp SINE Alu -18 295 1 772 236 39 6 chr6 13738172 13738354 -175541200 + MER91A DNA MER1_type 9 196 0 2692 113 25 27 chr6 13739235 13739263 -175540291 + L1PA15 LINE L1 5754 5781 -384 2403 106 0 0 chr6 13739263 13739575 -175539979 + AluSx SINE Alu 1 312 0 2692 113 25 27 chr6 13739575 13739952 -175539602 + L1PA15 LINE L1 5781 6158 -7 189 0 0 0 chr6 13739952 13739973 -175539581 + (TA)n Simple_repeat Simple_repeat 2 22 0 313 391 0 0 chr6 13741176 13741291 -175538263 + L2 LINE L2 3153 3267 -5 27 29 0 0 chr6 13741292 13741326 -175538228 + AT_rich Low_complexity Low_complexity 1 34 0 35 54 0 0 chr6 13741845 13741901 -175537653 + AT_rich Low_complexity Low_complexity 1 56 0 1979 119 0 27 chr6 13742495 13742814 -175536740 + AluSq SINE Alu 1 311 0 226 314 39 45 chr6 13745028 13745184 -175534370 + L2 LINE L2 1699 1853 -1461 308 336 79 55 chr6 13746669 13746961 -175532593 + L2 LINE L2 2963 3261 -11 632 227 59 49 chr6 13747530 13747733 -175531821 - MIR SINE MIR -10 252 48 2841 145 66 32 chr6 13747840 13748332 -175531222 - L1MA6 LINE L1 -4 6296 5783 477 0 0 0 chr6 13748332 13748385 -175531169 + (TG)n Simple_repeat Simple_repeat 2 54 0 2841 145 66 32 chr6 13748385 13748424 -175531130 - L1MA6 LINE L1 -517 5783 5747 296 128 0 0 chr6 13748547 13748594 -175530960 - L1M2 LINE L1 -507 5793 5747 * 1077 155 58 0 chr6 13748592 13748798 -175530756 + L1M2 LINE L1 5562 5779 -512 2565 53 0 0 chr6 13748949 13749253 -175530301 + AluY SINE Alu 1 304 -7 839 225 115 16 chr6 13750695 13750886 -175528668 + MER63A DNA MER1_type 1 210 0 247 311 0 0 chr6 13750967 13751041 -175528513 + MIR3 SINE MIR 111 184 -24 388 324 0 0 chr6 13751902 13752013 -175527541 - L2 LINE L2 0 3272 3162 37 23 0 0 chr6 13753422 13753466 -175526088 + AT_rich Low_complexity Low_complexity 1 44 0 2181 100 7 0 chr6 13754099 13754431 -175525123 - AluSp SINE Alu 0 334 1 192 40 0 0 chr6 13755138 13755163 -175524391 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2170 120 0 0 chr6 13756413 13756712 -175522842 - AluSq SINE Alu -14 299 1 213 325 38 0 chr6 13756779 13756859 -175522695 + CT-rich Low_complexity Low_complexity 2 84 0 1202 247 0 0 chr6 13757289 13757524 -175522030 - MIR SINE MIR -21 241 7 853 213 133 8 chr6 13757570 13757810 -175521744 + ORSL DNA AcHobo 1 270 -5 300 228 73 103 chr6 13757974 13758206 -175521348 - MER112 DNA MER1_type -7 253 29 2225 120 3 3 chr6 13758214 13758522 -175521032 - AluSx SINE Alu -4 308 1 473 321 16 26 chr6 13758662 13758852 -175520702 + MIR SINE MIR 18 205 -57 * 1566 269 125 31 chr6 13758842 13758876 -175520678 + L2 LINE L2 2221 2250 -1063 1938 111 3 74 chr6 13758876 13759200 -175520354 - AluSg SINE Alu -9 301 1 1566 269 125 31 chr6 13759200 13759236 -175520318 + L2 LINE L2 2250 2281 -1032 2029 135 3 3 chr6 13759236 13759533 -175520021 - AluSx SINE Alu -15 297 1 1566 269 125 31 chr6 13759533 13760427 -175519127 + L2 LINE L2 2281 3261 -52 21 57 0 0 chr6 13761734 13761769 -175517785 + AT_rich Low_complexity Low_complexity 1 35 0 347 287 125 15 chr6 13761958 13762094 -175517460 - MIR3 SINE MIR -21 187 37 2082 149 46 0 chr6 13762358 13762687 -175516867 + MER2 DNA MER2_type 1 344 0 2205 90 0 37 chr6 13763092 13763391 -175516163 + AluY SINE Alu 3 290 -21 252 0 0 0 chr6 13763391 13763419 -175516135 + (TA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr6 13766338 13766386 -175513168 + (CA)n Simple_repeat Simple_repeat 2 50 0 551 185 19 12 chr6 13766778 13766940 -175512614 + CT-rich Low_complexity Low_complexity 2 164 0 24 0 0 0 chr6 13767535 13767559 -175511995 + GC_rich Low_complexity Low_complexity 1 24 0 262 226 10 10 chr6 13767722 13767824 -175511730 + G-rich Low_complexity Low_complexity 6 107 0 295 308 13 0 chr6 13767953 13768031 -175511523 + GA-rich Low_complexity Low_complexity 2 80 0 1336 211 0 12 chr6 13769817 13770076 -175509478 - AluJo SINE Alu -55 257 9 206 264 0 19 chr6 13770091 13770144 -175509410 + GA-rich Low_complexity Low_complexity 3 54 0 279 292 29 40 chr6 13770144 13770248 -175509306 - MIR SINE MIR -93 115 11 1654 194 0 14 chr6 13770913 13771207 -175508347 - AluJb SINE Alu -22 290 1 225 263 8 42 chr6 13771212 13771330 -175508224 + T-rich Low_complexity Low_complexity 5 118 0 338 350 15 30 chr6 13771495 13771692 -175507862 + MIR3 SINE MIR 1 194 -14 406 274 14 41 chr6 13772349 13772495 -175507059 + MER5A DNA MER1_type 9 150 -39 502 232 7 21 chr6 13772500 13772642 -175506912 + L1MB2 LINE L1 4090 4229 -1917 3945 165 24 11 chr6 13873862 13874601 -175404953 + L1MB2 LINE L1 5422 6170 -1 207 100 0 0 chr6 13875516 13875546 -175404008 + (T)n Simple_repeat Simple_repeat 1 30 0 586 287 22 22 chr6 13877467 13877739 -175401815 + AluSg1 SINE Alu 36 307 -2 1612 70 0 0 chr6 13878549 13878735 -175400819 - AluSg/x SINE Alu -20 290 105 258 146 0 0 chr6 13878735 13878776 -175400778 - Alu SINE Alu -260 41 1 196 337 122 20 chr6 13878804 13878902 -175400652 - MER5A DNA MER1_type -75 114 7 1587 137 3 51 chr6 13879020 13879312 -175400242 + AluSq SINE Alu 35 312 -1 2254 99 20 0 chr6 13880825 13881117 -175398437 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 13881710 13881847 -175397707 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 13881951 13882136 -175397418 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 13882554 13882671 -175396883 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 13883333 13883786 -175395768 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 13884745 13885348 -175394206 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 13885377 13885440 -175394114 + (CA)n Simple_repeat Simple_repeat 2 64 0 210 71 0 0 chr6 13885932 13885960 -175393594 + (G)n Simple_repeat Simple_repeat 1 28 0 2137 125 0 7 chr6 13886397 13886693 -175392861 - AluSc SINE Alu -15 294 1 297 274 35 53 chr6 13886694 13886807 -175392747 - MIR SINE MIR -98 164 54 309 285 65 32 chr6 13887633 13887756 -175391798 - MER5B DNA MER1_type -50 128 2 2134 110 4 0 chr6 13888171 13888481 -175391073 + AluSx SINE Alu 1 311 0 184 307 114 43 chr6 13888839 13888979 -175390575 - L2 LINE L2 -6 3266 3117 286 334 208 25 chr6 13889193 13889717 -175389837 - L2 LINE L2 -411 2903 2284 338 262 107 0 chr6 13890128 13890250 -175389304 - MIR SINE MIR -64 198 64 2116 114 10 7 chr6 13890453 13890743 -175388811 - AluSg SINE Alu -18 292 2 435 339 18 0 chr6 13890750 13890918 -175388636 - MER5A DNA MER1_type -6 183 13 212 282 101 34 chr6 13891009 13891095 -175388459 + MIR SINE MIR 71 150 -112 1301 108 33 75 chr6 13891095 13891335 -175388219 - MER30 DNA MER1_type 0 230 1 212 282 101 34 chr6 13891335 13891397 -175388157 + MIR SINE MIR 150 229 -33 192 250 0 0 chr6 13891705 13891741 -175387813 + L2 LINE L2 3266 3301 -12 400 238 19 0 chr6 13891821 13891926 -175387628 + MER5A DNA MER1_type 10 116 -73 1177 34 0 27 chr6 13892163 13892312 -175387242 + L1PA5 LINE L1 6010 6154 0 331 314 45 0 chr6 13892314 13892473 -175387081 + MIR SINE MIR 35 198 -58 317 216 137 93 chr6 13892495 13892634 -175386920 + MER91A DNA MER1_type 52 196 0 2287 117 0 0 chr6 13893136 13893443 -175386111 + AluSg SINE Alu 1 307 -3 2259 106 3 3 chr6 13894074 13894377 -175385177 - AluSx SINE Alu -9 303 1 1056 141 38 0 chr6 13895060 13895244 -175384310 - L1MA7 LINE L1 -6 6285 6095 2325 85 0 20 chr6 13895440 13895735 -175383819 - AluSc SINE Alu -20 289 1 1577 196 3 7 chr6 13896170 13896455 -175383099 + AluJo SINE Alu 1 284 -28 252 0 0 0 chr6 13896472 13896500 -175383054 + (TA)n Simple_repeat Simple_repeat 1 28 0 272 214 0 0 chr6 13897052 13897108 -175382446 - L2 LINE L2 -60 3253 3198 188 295 253 0 chr6 13897189 13897284 -175382270 - L3 LINE CR1 -1027 550 432 205 337 64 41 chr6 13897441 13897613 -175381941 + L2 LINE L2 2884 3059 -213 1599 228 66 24 chr6 13898063 13898515 -175381039 + MER74B LTR ERVL 69 539 -83 1414 204 34 67 chr6 13899359 13899523 -175380031 + MLT1A2 LTR MaLR 1 169 -205 2067 112 3 42 chr6 13899523 13899836 -175379718 + AluSx SINE Alu 1 301 -11 1414 204 34 67 chr6 13899836 13900058 -175379496 + MLT1A2 LTR MaLR 169 374 0 2104 133 0 3 chr6 13900160 13900461 -175379093 + AluJb SINE Alu 1 300 -12 367 329 43 6 chr6 13900497 13900661 -175378893 + MIR SINE MIR 13 182 -80 201 314 59 52 chr6 13902181 13902334 -175377220 + L2 LINE L2 2633 2786 -528 3596 116 17 17 chr6 13902624 13903151 -175376403 + MER1A DNA MER1_type 1 527 0 316 267 100 0 chr6 13903265 13903385 -175376169 + L1ME LINE L1 5558 5689 -432 213 243 14 40 chr6 13905250 13905324 -175374230 + GA-rich Low_complexity Low_complexity 6 77 0 22 35 0 0 chr6 13906893 13906922 -175372632 + AT_rich Low_complexity Low_complexity 1 29 0 2447 69 3 0 chr6 13907638 13907927 -175371627 - AluSp SINE Alu -23 290 1 32 26 0 0 chr6 13907937 13907976 -175371578 + AT_rich Low_complexity Low_complexity 1 39 0 587 104 21 0 chr6 13910133 13910229 -175369325 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr6 13910402 13910425 -175369129 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr6 13910436 13910476 -175369078 + (CA)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr6 13910618 13910641 -175368913 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1881 143 0 7 chr6 13910643 13910930 -175368624 - AluJb SINE Alu -27 285 1 863 206 10 36 chr6 13911270 13911464 -175368090 - MER5A DNA MER1_type 0 189 1 333 273 0 0 chr6 13912417 13912505 -175367049 - L1MC4 LINE L1 -1340 6702 6615 222 143 0 0 chr6 13912505 13912554 -175367000 + (GA)n Simple_repeat Simple_repeat 1 49 0 1406 150 105 20 chr6 13912565 13912812 -175366742 - AluJo SINE Alu -34 278 11 23 0 0 0 chr6 13913197 13913220 -175366334 + AT_rich Low_complexity Low_complexity 1 23 0 192 360 10 10 chr6 13914460 13914560 -175364994 + MIR3 SINE MIR 97 196 -12 24 0 0 0 chr6 13914757 13914781 -175364773 + AT_rich Low_complexity Low_complexity 1 24 0 264 316 132 6 chr6 13914959 13915133 -175364421 - MIR SINE MIR -6 256 61 234 91 0 0 chr6 13915145 13915178 -175364376 + (GA)n Simple_repeat Simple_repeat 2 34 0 1953 92 4 11 chr6 13915909 13916171 -175363383 + AluSc SINE Alu 19 278 -31 437 135 40 0 chr6 13916637 13916711 -175362843 + MADE1 DNA Mariner 1 77 -3 2274 92 3 3 chr6 13917835 13918128 -175361426 + AluSq SINE Alu 1 293 -20 773 272 19 5 chr6 13918199 13918405 -175361149 - MER3 DNA MER1_type 0 209 1 486 250 250 19 chr6 13919667 13919927 -175359627 + MLT1L LTR MaLR 215 534 -81 196 289 33 0 chr6 13919931 13920021 -175359533 - L2 LINE L2 0 3313 3221 659 321 79 43 chr6 13920203 13920941 -175358613 + L2 LINE L2 1932 2695 -619 421 334 49 37 chr6 13921102 13921452 -175358102 + L2 LINE L2 2919 3272 0 22 0 0 0 chr6 13921965 13921987 -175357567 + AT_rich Low_complexity Low_complexity 1 22 0 194 308 33 67 chr6 13922786 13922906 -175356648 + MIR3 SINE MIR 72 187 -21 1012 229 112 0 chr6 13922945 13923159 -175356395 - MER8 DNA MER2_type 0 239 2 817 273 61 60 chr6 13923410 13924003 -175355551 - L2 LINE L2 0 3313 2708 653 322 41 25 chr6 13924173 13924487 -175355067 + L2 LINE L2 2995 3313 0 539 286 182 16 chr6 13926052 13926244 -175353310 - MIR SINE MIR -38 224 1 302 292 163 22 chr6 13926381 13926559 -175352995 - L2 LINE L2 -3 3310 3108 2199 108 7 0 chr6 13926647 13926942 -175352612 - AluSx SINE Alu -15 297 1 215 319 78 26 chr6 13926948 13927064 -175352490 - L2 LINE L2 -18 3254 3133 247 250 25 12 chr6 13927398 13927478 -175352076 + L3b LINE CR1 1296 1376 -207 1939 116 25 0 chr6 13927479 13927603 -175351951 + AluSx SINE Alu 1 120 -192 282 29 0 0 chr6 13927603 13927638 -175351916 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1939 116 25 0 chr6 13927638 13927818 -175351736 + AluSx SINE Alu 120 312 0 181 157 0 39 chr6 13928553 13928604 -175350950 + GA-rich Low_complexity Low_complexity 2 50 0 800 137 7 43 chr6 13928638 13928777 -175350777 + AluJo SINE Alu 2 135 -177 5679 124 70 18 chr6 13929104 13930031 -175349523 - Tigger1 DNA MER2_type -1443 975 1 2411 240 69 13 chr6 13930877 13931503 -175348051 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13931503 13931582 -175347972 - MER31B LTR ERV1 -384 82 1 657 215 60 52 chr6 13933346 13933579 -175345975 - MER39 LTR ERV1 0 707 473 447 276 25 80 chr6 13934202 13934322 -175345232 - MER5A DNA MER1_type -21 168 58 2142 167 74 26 chr6 13934322 13934700 -175344854 - MSTD LTR MaLR 0 396 1 447 276 25 80 chr6 13934700 13934742 -175344812 - MER5A DNA MER1_type -131 58 15 800 236 20 92 chr6 13936882 13937075 -175342479 - L1MD3 LINE L1 -8 7987 7829 2170 131 0 3 chr6 13937075 13937381 -175342173 + AluSx SINE Alu 1 305 -7 800 236 20 92 chr6 13937381 13937535 -175342019 - L1MD3 LINE L1 -166 7829 7665 1558 187 15 4 chr6 13938379 13938652 -175340902 + AluJo SINE Alu 7 282 -30 603 209 79 70 chr6 13938788 13939003 -175340551 - MER21B LTR ERV1 -149 714 498 2928 106 30 2 chr6 13939025 13939458 -175340096 - LTR56 LTR ERV1 0 445 1 996 169 18 114 chr6 13939467 13939739 -175339815 - L1MEc LINE L1 -1899 4316 4071 1284 181 4 9 chr6 13939739 13939966 -175339588 - AluJo SINE Alu -1 311 86 4350 231 48 67 chr6 13939966 13940410 -175339144 - L1MEc LINE L1 -2143 4072 3621 1653 178 25 4 chr6 13940410 13940685 -175338869 - AluJo SINE Alu -31 281 1 4350 231 48 67 chr6 13940685 13943107 -175336447 - L1MEc LINE L1 -2594 3621 1059 309 26 0 0 chr6 13943107 13943145 -175336409 + (TG)n Simple_repeat Simple_repeat 2 39 0 4350 231 48 67 chr6 13943145 13944155 -175335399 - L1MEc LINE L1 -5156 1059 32 233 241 0 0 chr6 13944182 13944236 -175335318 + T-rich Low_complexity Low_complexity 1 54 0 361 242 148 53 chr6 13944239 13944682 -175334872 - L1MC/D LINE L1 -305 5816 5357 360 283 204 27 chr6 13944684 13945091 -175334463 - HAL1 LINE L1 0 2507 2029 6411 85 26 13 chr6 13945152 13946366 -175333188 - L1PA13 LINE L1 -3 6160 4935 815 151 0 0 chr6 13946373 13946492 -175333062 + FRAM SINE Alu 46 164 -12 399 319 68 16 chr6 13946492 13946740 -175332814 + L1 LINE L1 3384 3644 -2502 362 273 69 49 chr6 13946748 13947106 -175332448 + L1 LINE L1 3854 4213 -1933 957 207 4 80 chr6 13947869 13948106 -175331448 + MER20 DNA MER1_type 1 219 0 460 264 185 35 chr6 13948138 13948365 -175331189 - MIR SINE MIR 0 262 2 199 188 0 0 chr6 13948380 13948412 -175331142 - MIR SINE MIR -55 153 122 237 65 0 0 chr6 13948651 13948682 -175330872 + (TC)n Simple_repeat Simple_repeat 1 31 0 448 247 112 34 chr6 13948766 13948944 -175330610 - LTR16C LTR ERVL 0 491 300 202 204 23 0 chr6 13949696 13949740 -175329814 - MIR SINE MIR 0 262 218 340 268 62 67 chr6 13949779 13949988 -175329566 + L1ME3A LINE L1 5961 6168 -2 591 235 47 20 chr6 13950050 13950199 -175329355 - MIR SINE MIR -46 216 64 2339 109 3 0 chr6 13951745 13952049 -175327505 - AluSg SINE Alu -5 305 1 483 282 119 13 chr6 13952070 13952297 -175327257 + MIR SINE MIR 2 252 -10 188 171 29 29 chr6 13953479 13953549 -175326005 + CT-rich Low_complexity Low_complexity 3 72 0 752 218 26 13 chr6 13954541 13954697 -175324857 + MIR SINE MIR 13 170 -92 203 404 35 0 chr6 13954844 13955015 -175324539 - L2 LINE L2 -503 2811 2635 226 259 0 0 chr6 13955213 13955267 -175324287 + (TA)n Simple_repeat Simple_repeat 1 54 0 1041 219 5 9 chr6 13957897 13958112 -175321442 - MLT1A2 LTR MaLR -11 363 150 359 217 155 87 chr6 13958263 13958470 -175321084 + L1PBa LINE L1 740 960 -2263 26 50 0 0 chr6 13958836 13958876 -175320678 + AT_rich Low_complexity Low_complexity 1 40 0 1984 150 0 7 chr6 13958925 13959219 -175320335 + AluJb SINE Alu 3 294 -18 24 53 0 0 chr6 13959306 13959344 -175320210 + AT_rich Low_complexity Low_complexity 1 38 0 623 316 67 10 chr6 13959923 13960116 -175319438 - MIR SINE MIR -44 218 15 3127 147 32 26 chr6 13960142 13960561 -175318993 - MER34 LTR ERV1 -1 541 117 1891 142 10 10 chr6 13960561 13960863 -175318691 + AluJo SINE Alu 1 302 -10 3127 147 32 26 chr6 13960863 13960981 -175318573 - MER34 LTR ERV1 -425 117 1 1964 90 181 12 chr6 13961116 13961437 -175318117 - THE1C LTR MaLR 0 375 1 8677 202 23 17 chr6 13961458 13964402 -175315152 + L1PBa LINE L1 1648 4673 -2189 276 100 0 0 chr6 13964405 13964445 -175315109 + (TA)n Simple_repeat Simple_repeat 2 41 0 504 86 0 0 chr6 13964455 13964525 -175315029 + (CA)n Simple_repeat Simple_repeat 2 71 0 2338 133 3 16 chr6 13964525 13964888 -175314666 + L1PB1 LINE L1 5794 6151 0 710 233 57 5 chr6 13965843 13966036 -175313518 - Tigger1 DNA MER2_type -7 2411 2209 213 385 0 0 chr6 13966210 13966376 -175313178 + G-rich Low_complexity Low_complexity 1 166 0 879 161 310 41 chr6 13966972 13967214 -175312340 - AluJo SINE Alu 0 312 6 1800 153 4 4 chr6 13967224 13967498 -175312056 - AluJo SINE Alu 0 312 39 23 0 0 0 chr6 13967503 13967526 -175312028 + AT_rich Low_complexity Low_complexity 1 23 0 1905 158 0 16 chr6 13969139 13969442 -175310112 + AluSx SINE Alu 1 298 -14 475 36 0 0 chr6 13971203 13971259 -175308295 + AluY SINE Alu 2 57 -256 2084 138 0 10 chr6 13971737 13972048 -175307506 + AluSx SINE Alu 1 308 -4 473 217 148 57 chr6 13973383 13973627 -175305927 + L1MC5 LINE L1 7664 7929 -32 181 211 73 128 chr6 13973698 13973807 -175305747 + MIR SINE MIR 37 139 -69 2249 96 3 7 chr6 13974695 13974997 -175304557 + AluSx SINE Alu 2 302 -10 23 0 0 0 chr6 13975010 13975033 -175304521 + AT_rich Low_complexity Low_complexity 1 23 0 1697 152 58 32 chr6 13975200 13975509 -175304045 - MER2 DNA MER2_type -27 318 2 540 251 61 39 chr6 13975550 13975781 -175303773 + L1ME LINE L1 5371 5606 -560 527 296 17 11 chr6 13975981 13976157 -175303397 - MER5B DNA MER1_type -1 177 1 1940 76 64 0 chr6 13976258 13976522 -175303032 + AluY SINE Alu 26 306 -5 752 218 26 13 chr6 13976934 13977090 -175302464 + MIR SINE MIR 13 170 -92 203 404 35 0 chr6 13977237 13977408 -175302146 - L2 LINE L2 -503 2811 2635 226 259 0 0 chr6 13977606 13977660 -175301894 + (TA)n Simple_repeat Simple_repeat 1 54 0 1041 219 5 9 chr6 13980287 13980502 -175299052 - MLT1A2 LTR MaLR -11 363 150 359 217 155 87 chr6 13980653 13980860 -175298694 + HAL1 LINE L1 24 244 -2263 26 50 0 0 chr6 13981226 13981266 -175298288 + AT_rich Low_complexity Low_complexity 1 40 0 1984 150 0 7 chr6 13981315 13981609 -175297945 + AluJb SINE Alu 3 294 -18 24 53 0 0 chr6 13981696 13981734 -175297820 + AT_rich Low_complexity Low_complexity 1 38 0 623 316 67 10 chr6 13982313 13982506 -175297048 - MIR SINE MIR -44 218 15 3127 147 32 26 chr6 13982532 13982951 -175296603 - MER34 LTR ERV1 -1 541 117 1895 142 10 10 chr6 13982951 13983253 -175296301 + AluJo SINE Alu 1 302 -10 3127 147 32 26 chr6 13983253 13983371 -175296183 - MER34 LTR ERV1 -425 117 1 1964 90 181 12 chr6 13983506 13983827 -175295727 - THE1C LTR MaLR 0 375 1 191 253 22 66 chr6 13987288 13987379 -175292175 + L2 LINE L2 3186 3272 0 964 127 19 13 chr6 13987630 13987787 -175291767 + L1PBa LINE L1 1 158 -6705 12810 163 37 15 chr6 13987802 13991665 -175287889 + L1PBa LINE L1 725 4672 -2190 234 254 0 0 chr6 13991668 13991735 -175287819 + L1MC4 LINE L1 6637 6703 -1339 226 235 0 0 chr6 13991693 13991744 -175287810 - L1MC4 LINE L1 -1339 6703 6653 * 204 40 0 0 chr6 13991744 13991769 -175287785 + (CA)n Simple_repeat Simple_repeat 1 25 0 2784 91 3 3 chr6 13991769 13992130 -175287424 + L1PB1 LINE L1 5791 6151 0 3671 144 28 15 chr6 13993068 13993666 -175285888 - Tigger1 DNA MER2_type -7 2411 1806 382 105 53 0 chr6 13993664 13993721 -175285833 - Tigger1 DNA MER2_type -1393 1025 966 * 413 108 0 14 chr6 13993724 13993798 -175285756 + (CCCCCT)n Simple_repeat Simple_repeat 3 75 0 9708 55 7 111 chr6 13994027 13995573 -175283981 + SVA Other Other 2 1386 0 321 343 114 6 chr6 13995582 13995748 -175283806 - MIR SINE MIR -77 185 2 213 180 40 20 chr6 13996401 13996451 -175283103 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr6 13996467 13996489 -175283065 + AT_rich Low_complexity Low_complexity 1 22 0 778 150 7 54 chr6 13996499 13996646 -175282908 + FLAM_C SINE Alu 2 141 -2 5690 124 70 18 chr6 13996963 13997891 -175281663 - Tigger1 DNA MER2_type -1442 976 1 2411 240 69 13 chr6 13998736 13999362 -175280192 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13999362 13999441 -175280113 - MER31B LTR ERV1 -384 82 1 1062 239 52 0 chr6 13999972 14000185 -175279369 + MER58A DNA MER1_type 1 224 0 4180 157 28 15 chr6 14000840 14001579 -175277975 + L1MB2 LINE L1 5422 6170 -1 216 97 0 0 chr6 14002480 14002511 -175277043 + (T)n Simple_repeat Simple_repeat 1 31 0 1613 110 0 5 chr6 14002953 14003171 -175276383 - AluSx SINE Alu -95 217 1 1908 214 13 5 chr6 14003206 14003604 -175275950 - L1M4 LINE L1 -1028 5118 4718 477 276 20 30 chr6 14003580 14003783 -175275771 + L1M4 LINE L1 3419 3619 -2527 * 2740 112 14 12 chr6 14003785 14004204 -175275350 + L1MA2 LINE L1 5885 6304 0 353 155 272 10 chr6 14004230 14004333 -175275221 - MER5A DNA MER1_type -6 183 54 1986 258 35 18 chr6 14004439 14005383 -175274171 + L1M4 LINE L1 3599 4655 -1491 1160 136 0 28 chr6 14005383 14005559 -175273995 + AluJb SINE Alu 132 302 -10 414 346 64 4 chr6 14005562 14005842 -175273712 + L1M4 LINE L1 4650 4946 -1200 1368 217 67 59 chr6 14006270 14006657 -175272897 + MLT1B LTR MaLR 1 390 0 365 288 203 28 chr6 14006840 14007017 -175272537 + MIR SINE MIR 34 241 -21 525 239 33 77 chr6 14008553 14008806 -175270748 - L1ME3A LINE L1 -2 6168 5928 443 181 59 34 chr6 14008814 14008960 -175270594 - L1ME3A LINE L1 -196 5968 5814 319 272 164 28 chr6 14008942 14009229 -175270325 - L1MC5 LINE L1 -25 7936 7611 * 427 256 91 0 chr6 14010023 14010144 -175269410 + MER103 DNA DNA 34 165 -1 1686 98 31 9 chr6 14010467 14010692 -175268862 - MER30 DNA MER1_type 0 230 1 1739 164 18 0 chr6 14010814 14011115 -175268439 + AluJb SINE Alu 1 306 0 474 333 24 0 chr6 14012184 14012394 -175267160 + L1ME3A LINE L1 5611 5825 -345 2159 115 0 3 chr6 14012800 14013096 -175266458 + AluSx SINE Alu 1 295 -17 2539 204 62 6 chr6 14013442 14013970 -175265584 - MER74A LTR ERVL 0 558 1 536 203 16 24 chr6 14014723 14014846 -175264708 - L1MB7 LINE L1 -9 6175 6054 1968 123 29 4 chr6 14014904 14015207 -175264347 - AluSx SINE Alu 0 310 1 26 0 0 0 chr6 14015294 14015320 -175264234 + AT_rich Low_complexity Low_complexity 1 26 0 2383 175 73 2 chr6 14015821 14016243 -175263311 + LTR47A LTR ERVL 1 452 0 2248 99 0 0 chr6 14016357 14016649 -175262905 + AluSg SINE Alu 1 292 -18 372 268 102 0 chr6 14016847 14016974 -175262580 + MIR SINE MIR 59 198 -64 426 310 172 65 chr6 14017385 14018263 -175261291 + L2 LINE L2 2284 3266 -6 2111 110 4 0 chr6 14018621 14018931 -175260623 - AluSx SINE Alu 0 311 1 346 268 65 32 chr6 14019346 14019469 -175260085 + MER5B DNA MER1_type 2 128 -50 210 255 0 153 chr6 14019469 14019567 -175259987 - MIR SINE MIR -90 118 36 330 274 35 53 chr6 14020295 14020408 -175259146 + MIR SINE MIR 54 164 -98 2139 125 0 3 chr6 14020409 14020704 -175258850 + AluSc SINE Alu 1 294 -15 186 43 0 0 chr6 14021445 14021468 -175258086 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1994 130 7 0 chr6 14021742 14022027 -175257527 - AluJb SINE Alu -25 287 1 181 157 0 39 chr6 14022060 14022111 -175257443 + CT-rich Low_complexity Low_complexity 2 50 0 1938 116 25 0 chr6 14022841 14023021 -175256533 - AluSx SINE Alu 0 312 120 282 29 0 0 chr6 14023021 14023056 -175256498 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1938 116 25 0 chr6 14023056 14023180 -175256374 - AluSx SINE Alu -192 120 1 247 250 25 12 chr6 14023181 14023261 -175256293 - L3b LINE CR1 -207 1376 1296 215 319 78 26 chr6 14023595 14023711 -175255843 + L2 LINE L2 3133 3254 -18 2199 108 7 0 chr6 14023717 14024012 -175255542 + AluSx SINE Alu 1 297 -15 302 292 163 22 chr6 14024100 14024278 -175255276 + L2 LINE L2 3108 3310 -3 539 286 182 16 chr6 14024415 14024607 -175254947 + MIR SINE MIR 1 224 -38 592 321 42 23 chr6 14026172 14026480 -175253074 - L2 LINE L2 0 3313 3000 681 273 65 59 chr6 14026652 14027223 -175252331 + L2 LINE L2 2708 3294 -19 1012 229 112 0 chr6 14027494 14027708 -175251846 + MER8 DNA MER2_type 2 239 0 22 0 0 0 chr6 14028666 14028688 -175250866 + AT_rich Low_complexity Low_complexity 1 22 0 455 339 49 32 chr6 14029201 14029549 -175250005 - L2 LINE L2 0 3272 2919 659 321 79 43 chr6 14029710 14030448 -175249106 - L2 LINE L2 -619 2695 1932 196 289 33 0 chr6 14030630 14030720 -175248834 + L2 LINE L2 3221 3313 0 486 250 250 19 chr6 14030724 14030984 -175248570 - MLT1L LTR MaLR -81 534 215 773 272 19 5 chr6 14032246 14032452 -175247102 + MER3 DNA MER1_type 1 209 0 2274 92 3 3 chr6 14032523 14032816 -175246738 - AluSq SINE Alu -20 293 1 437 135 40 0 chr6 14033936 14034010 -175245544 - MADE1 DNA Mariner -3 77 1 1953 92 4 11 chr6 14034476 14034738 -175244816 - AluSc SINE Alu -31 278 19 234 91 0 0 chr6 14035466 14035499 -175244055 + (TC)n Simple_repeat Simple_repeat 2 34 0 264 316 132 6 chr6 14035511 14035685 -175243869 + MIR SINE MIR 61 256 -6 24 0 0 0 chr6 14035863 14035887 -175243667 + AT_rich Low_complexity Low_complexity 1 24 0 192 360 10 10 chr6 14036084 14036184 -175243370 - MIR3 SINE MIR -12 196 97 23 0 0 0 chr6 14037408 14037431 -175242123 + AT_rich Low_complexity Low_complexity 1 23 0 1392 162 97 12 chr6 14037815 14038062 -175241492 + AluJo SINE Alu 11 278 -34 222 143 0 0 chr6 14038073 14038122 -175241432 + (TC)n Simple_repeat Simple_repeat 1 49 0 333 273 0 0 chr6 14038122 14038210 -175241344 + L1MC4 LINE L1 6615 6702 -1340 863 206 10 36 chr6 14039163 14039357 -175240197 + MER5A DNA MER1_type 1 189 0 1937 147 0 0 chr6 14039696 14040006 -175239548 + AluJb SINE Alu 1 310 0 360 0 0 0 chr6 14040148 14040188 -175239366 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr6 14040199 14040222 -175239332 + AT_rich Low_complexity Low_complexity 1 23 0 623 100 20 0 chr6 14040395 14040495 -175239059 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 32 26 0 0 chr6 14042645 14042684 -175236870 + AT_rich Low_complexity Low_complexity 1 39 0 2447 69 3 0 chr6 14042694 14042983 -175236571 + AluSp SINE Alu 1 290 -23 22 35 0 0 chr6 14043699 14043728 -175235826 + AT_rich Low_complexity Low_complexity 1 29 0 236 230 14 40 chr6 14045294 14045368 -175234186 + CT-rich Low_complexity Low_complexity 6 77 0 250 272 61 18 chr6 14047013 14047127 -175232427 - L1ME4a LINE L1 -197 5924 5806 316 267 100 0 chr6 14047217 14047337 -175232217 - L1ME4a LINE L1 -432 5689 5558 3596 116 17 17 chr6 14047451 14047978 -175231576 - MER1A DNA MER1_type 0 527 1 201 314 59 52 chr6 14048268 14048421 -175231133 - L2 LINE L2 -528 2786 2633 367 329 43 6 chr6 14049941 14050105 -175229449 - MIR SINE MIR -80 182 13 2104 133 0 3 chr6 14050141 14050442 -175229112 - AluJb SINE Alu -12 300 1 1425 204 34 67 chr6 14050544 14050766 -175228788 - MLT1A2 LTR MaLR 0 374 169 2171 103 6 39 chr6 14050766 14051077 -175228477 - AluSx SINE Alu -11 301 1 1425 204 34 67 chr6 14051077 14051241 -175228313 - MLT1A2 LTR MaLR -205 169 1 1599 228 66 24 chr6 14052085 14052537 -175227017 - MER74B LTR ERVL -83 539 69 205 337 64 41 chr6 14052987 14053159 -175226395 - L2 LINE L2 -213 3059 2884 188 295 253 0 chr6 14053316 14053411 -175226143 + L3 LINE CR1 432 550 -1027 272 214 0 0 chr6 14053492 14053548 -175226006 + L2 LINE L2 3198 3253 -60 252 0 0 0 chr6 14054100 14054128 -175225426 + (TA)n Simple_repeat Simple_repeat 1 28 0 1635 189 3 7 chr6 14054145 14054430 -175225124 - AluJo SINE Alu -28 284 1 2580 81 0 0 chr6 14054865 14055174 -175224380 + AluSc SINE Alu 1 309 0 1056 141 38 0 chr6 14055350 14055534 -175224020 + L1MA7 LINE L1 6095 6285 -6 2289 108 0 3 chr6 14056217 14056523 -175223031 + AluSx SINE Alu 1 305 -7 2287 117 0 0 chr6 14057154 14057461 -175222093 - AluSg SINE Alu -3 307 1 317 216 137 93 chr6 14057963 14058102 -175221452 - MER91A DNA MER1_type 0 196 52 331 314 45 0 chr6 14058124 14058283 -175221271 - MIR SINE MIR -58 150 35 1177 34 0 27 chr6 14058285 14058434 -175221120 - L1PA5 LINE L1 0 6154 6010 400 238 19 0 chr6 14058671 14058776 -175220778 - MER5A DNA MER1_type -73 116 10 192 250 0 0 chr6 14058856 14058892 -175220662 - L2 LINE L2 -12 3301 3266 242 293 102 20 chr6 14059200 14059262 -175220292 - MIR SINE MIR -33 229 173 1354 101 38 71 chr6 14059262 14059500 -175220054 + MER30 DNA MER1_type 1 230 0 242 293 102 20 chr6 14059500 14059584 -175219970 - MIR SINE MIR -89 173 71 435 339 18 0 chr6 14059674 14059842 -175219712 + MER5A DNA MER1_type 13 183 -6 2381 95 10 3 chr6 14059849 14060155 -175219399 + AluSg SINE Alu 2 309 -1 1612 70 0 0 chr6 14060961 14061147 -175218407 - AluSg/x SINE Alu -20 292 107 275 122 0 0 chr6 14061147 14061188 -175218366 - Alu SINE Alu -259 41 1 219 316 122 20 chr6 14061216 14061314 -175218240 - MER5A DNA MER1_type -75 114 7 1977 93 3 41 chr6 14061428 14061718 -175217836 + AluSq SINE Alu 35 313 0 2254 99 20 0 chr6 14063224 14063516 -175216038 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 14064108 14064245 -175215309 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 14064349 14064534 -175215020 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 14064952 14065069 -175214485 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 14065731 14066184 -175213370 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 14067143 14067746 -175211808 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 14067775 14067838 -175211716 + (CA)n Simple_repeat Simple_repeat 2 64 0 195 42 0 0 chr6 14068328 14068352 -175211202 + (TG)n Simple_repeat Simple_repeat 2 25 0 586 177 234 34 chr6 14069039 14069248 -175210306 + MER5C DNA MER1_type 73 323 -1 396 274 201 38 chr6 14070383 14070671 -175208883 - L3 LINE CR1 -24 1553 1219 1711 182 0 23 chr6 14070744 14071051 -175208503 - AluJb SINE Alu -6 306 7 527 323 14 31 chr6 14071269 14071492 -175208062 + MIR SINE MIR 20 238 -24 213 39 0 0 chr6 14071650 14071676 -175207878 + (T)n Simple_repeat Simple_repeat 1 26 0 1586 55 5 0 chr6 14071868 14072067 -175207487 - L1PB2 LINE L1 -2 6149 5950 914 278 50 20 chr6 14072309 14072627 -175206927 + L2 LINE L2 2393 2727 -587 2161 150 13 20 chr6 14072627 14073020 -175206534 - MLT1B LTR MaLR 0 390 1 914 278 50 20 chr6 14073020 14073101 -175206453 + L2 LINE L2 2727 2804 -510 878 271 61 52 chr6 14073371 14073828 -175205726 + L2 LINE L2 2818 3278 -35 279 0 0 0 chr6 14073831 14073862 -175205692 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 1344 217 47 47 chr6 14074280 14074640 -175204914 + MLT1A1 LTR MaLR 1 360 -5 1414 43 0 0 chr6 14074798 14074962 -175204592 + U1 snRNA snRNA 1 164 -1 293 305 29 9 chr6 14075892 14075997 -175203557 - L2 LINE L2 -8 3305 3199 266 327 18 45 chr6 14076805 14076915 -175202639 + L3 LINE CR1 1470 1576 -1 215 273 0 0 chr6 14077047 14077091 -175202463 + MIR3 SINE MIR 151 194 -14 1168 139 134 19 chr6 14079303 14079512 -175200042 + AluJo SINE Alu 1 233 -79 625 106 32 8 chr6 14079538 14079661 -175199893 + GA-rich Low_complexity Low_complexity 3 128 0 229 280 110 60 chr6 14080653 14080835 -175198719 + MIR SINE MIR 20 210 -52 260 360 28 78 chr6 14081648 14082043 -175197511 - L2 LINE L2 -91 3181 2807 393 270 124 22 chr6 14082248 14082426 -175197128 + MIR SINE MIR 7 202 -60 2305 105 0 0 chr6 14082498 14082793 -175196761 + AluSg1 SINE Alu 1 295 -14 1084 193 22 40 chr6 14083403 14083626 -175195928 + MER20 DNA MER1_type 1 219 0 386 248 144 32 chr6 14084015 14084140 -175195414 - MER58B DNA MER1_type 0 341 203 186 254 42 42 chr6 14084150 14084221 -175195333 - L3 LINE CR1 -487 1090 1020 382 281 43 22 chr6 14084399 14084538 -175195016 + MIR SINE MIR 49 190 -72 343 347 57 10 chr6 14084626 14084819 -175194735 - L3 LINE CR1 -884 693 492 317 276 0 83 chr6 14084836 14084992 -175194562 - L2 LINE L2 -11 3302 3160 2454 85 0 0 chr6 14087482 14087777 -175191777 - AluSc SINE Alu -13 296 2 734 120 17 0 chr6 14088152 14088269 -175191285 - L1MB3 LINE L1 0 6183 6065 397 301 23 45 chr6 14088862 14089038 -175190516 + MIR3 SINE MIR 16 187 -21 434 293 86 17 chr6 14089396 14089628 -175189926 - MIR SINE MIR -3 259 12 1171 172 9 32 chr6 14089899 14090120 -175189434 - MER20 DNA MER1_type -3 216 1 2317 98 20 0 chr6 14091012 14091309 -175188245 + AluSx SINE Alu 1 303 -9 1583 195 4 0 chr6 14091477 14091749 -175187805 + AluJb SINE Alu 1 273 -39 243 143 0 0 chr6 14091749 14091784 -175187770 + (GA)n Simple_repeat Simple_repeat 1 35 0 811 142 24 24 chr6 14091784 14092237 -175187317 + GA-rich Low_complexity Low_complexity 1 453 0 466 264 42 6 chr6 14092504 14092671 -175186883 - MIR SINE MIR -10 252 80 202 200 0 0 chr6 14092692 14092732 -175186822 - MIR SINE MIR -18 244 205 455 282 206 0 chr6 14092748 14092918 -175186636 + MIR SINE MIR 41 245 -17 464 255 138 0 chr6 14093243 14093474 -175186080 - L3 LINE CR1 -111 1466 1204 2023 119 67 25 chr6 14094148 14094508 -175185046 - THE1C LTR MaLR 0 375 1 285 224 0 40 chr6 14095634 14095710 -175183844 + Charlie7 DNA MER1_type 31 103 -2509 2543 181 13 11 chr6 14097087 14097552 -175182002 - MLT1C LTR MaLR 0 467 2 298 308 109 14 chr6 14097630 14097825 -175181729 - Charlie8 DNA MER1_type -1024 1393 95 1813 149 14 17 chr6 14097842 14098130 -175181424 + AluJo SINE Alu 6 292 -20 1858 145 71 0 chr6 14098403 14098727 -175180827 - MER7A DNA MER2_type 0 346 2 207 152 0 0 chr6 14099736 14099782 -175179772 + (CAT)n Simple_repeat Simple_repeat 1 46 0 1897 156 0 7 chr6 14101161 14101489 -175178065 - AluSx SINE Alu 0 326 1 223 266 13 38 chr6 14101621 14101700 -175177854 - MIR SINE MIR -70 192 116 925 168 47 58 chr6 14102043 14102234 -175177320 + MER5A DNA MER1_type 1 189 0 258 239 306 15 chr6 14102249 14102383 -175177171 + MIR SINE MIR 21 193 -69 2113 119 0 39 chr6 14102488 14102798 -175176756 + AluSx SINE Alu 5 302 -10 365 286 20 0 chr6 14102805 14102903 -175176651 - MLT1J2 LTR MaLR -13 437 338 282 256 151 0 chr6 14102975 14103061 -175176493 - MLT1J2 LTR MaLR -285 165 67 5781 121 38 18 chr6 14104346 14104756 -175174798 - L1PA15 LINE L1 -23 6142 5742 9047 37 6 9 chr6 14104756 14105829 -175173725 - MER11C LTR ERVK -2 1069 1 5781 121 38 18 chr6 14105829 14106628 -175172926 - L1PA15 LINE L1 -423 5742 4917 249 319 83 12 chr6 14106676 14106845 -175172709 - MIR3 SINE MIR -3 205 25 351 0 0 0 chr6 14108069 14108108 -175171446 + (TG)n Simple_repeat Simple_repeat 1 39 0 2252 93 0 0 chr6 14108108 14108388 -175171166 - AluSq SINE Alu -33 280 1 1033 172 0 0 chr6 14108462 14108625 -175170929 + FAM SINE Alu 13 175 -10 1746 142 74 40 chr6 14109856 14110181 -175169373 + MER1B DNA MER1_type 2 337 0 2487 73 7 0 chr6 14110259 14110561 -175168993 + AluSq SINE Alu 1 304 -9 1102 232 5 0 chr6 14110709 14110916 -175168638 + MER58A DNA MER1_type 2 209 -15 23 0 0 0 chr6 14112525 14112548 -175167006 + AT_rich Low_complexity Low_complexity 1 23 0 1806 153 4 4 chr6 14112553 14112827 -175166727 + AluJo SINE Alu 39 312 0 991 155 227 64 chr6 14112836 14113100 -175166454 + AluJo SINE Alu 6 312 0 2255 119 0 19 chr6 14114688 14115006 -175164548 + AluSx SINE Alu 1 312 0 282 306 12 12 chr6 14115190 14115275 -175164279 + 7SK RNA RNA 12 96 -97 417 194 19 39 chr6 14115345 14115448 -175164106 - LTR33 LTR ERVL -3 518 418 * 430 175 12 0 chr6 14115441 14115521 -175164033 - MER117 DNA MER1_type -106 91 11 2644 141 26 5 chr6 14115718 14116137 -175163417 - MSTA LTR MaLR 0 428 1 9434 158 43 2 chr6 14116137 14117724 -175161830 - MSTA-int LTR MaLR 0 1651 1 2841 106 29 2 chr6 14117724 14118141 -175161413 - MSTA LTR MaLR 0 428 1 205 214 0 18 chr6 14118237 14118293 -175161261 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 631 208 79 28 chr6 14118562 14118740 -175160814 - MER5A DNA MER1_type -2 187 1 334 277 68 96 chr6 14118751 14118818 -175160736 - MER5B DNA MER1_type -6 172 105 2324 94 10 0 chr6 14118818 14119117 -175160437 + AluSx SINE Alu 1 302 -10 334 277 68 96 chr6 14119117 14119226 -175160328 - MER5B DNA MER1_type -73 105 1 318 368 25 50 chr6 14120811 14121050 -175158504 - L2 LINE L2 0 3272 3040 192 227 151 50 chr6 14121329 14121448 -175158106 - MIR3 SINE MIR -73 135 5 285 295 107 35 chr6 14121540 14121650 -175157904 - L2 LINE L2 -1333 1981 1880 1020 206 59 0 chr6 14121650 14121854 -175157700 - MER20 DNA MER1_type 0 219 4 285 295 107 35 chr6 14121854 14122004 -175157550 - L2 LINE L2 -1434 1880 1702 250 276 66 0 chr6 14122122 14122198 -175157356 - L2 LINE L2 0 3272 3192 353 228 19 152 chr6 14122198 14122356 -175157198 - MER45A DNA AcHobo -41 137 1 421 279 236 30 chr6 14122587 14123244 -175156310 - L2 LINE L2 -358 2956 2165 269 309 9 55 chr6 14123283 14123393 -175156161 - L2 LINE L2 -25 3288 3184 207 0 0 0 chr6 14123981 14124004 -175155550 + (T)n Simple_repeat Simple_repeat 1 23 0 393 294 80 84 chr6 14124857 14125179 -175154375 + L2 LINE L2 1395 1717 -1597 2281 93 3 3 chr6 14125179 14125470 -175154084 + AluSx SINE Alu 1 291 -21 393 294 80 84 chr6 14125470 14125483 -175154071 + L2 LINE L2 1717 1729 -1585 1667 191 3 3 chr6 14125483 14125765 -175153789 + AluJo SINE Alu 1 282 -30 212 77 26 0 chr6 14125768 14125807 -175153747 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 393 294 80 84 chr6 14125807 14126040 -175153514 + L2 LINE L2 1731 1966 -1348 969 289 111 65 chr6 14126468 14127230 -175152324 + L2 LINE L2 2004 2808 -506 2523 137 44 2 chr6 14127230 14127640 -175151914 - MSTA LTR MaLR 0 428 2 969 289 111 65 chr6 14127640 14127696 -175151858 + L2 LINE L2 2808 2860 -454 455 289 33 110 chr6 14127707 14128008 -175151546 + L2 LINE L2 2995 3272 0 306 0 0 0 chr6 14128581 14128615 -175150939 + (A)n Simple_repeat Simple_repeat 1 34 0 2200 104 0 0 chr6 14128727 14129024 -175150530 + AluSx SINE Alu 1 297 -15 552 222 22 37 chr6 14129118 14129253 -175150301 + MLT1D LTR MaLR 1 133 -372 213 324 14 14 chr6 14129253 14129327 -175150227 + MIR SINE MIR 187 260 -2 283 345 34 34 chr6 14129342 14129461 -175150093 - MIR SINE MIR -68 140 21 2226 212 80 47 chr6 14130280 14130291 -175149263 - MER21B LTR ERV1 -11 852 843 2166 98 0 10 chr6 14130291 14130596 -175148958 + AluSq SINE Alu 1 302 -11 2226 212 80 47 chr6 14130596 14131360 -175148194 - MER21B LTR ERV1 -20 843 1 2178 148 71 34 chr6 14131498 14131746 -175147808 - MSTA LTR MaLR 0 428 158 1592 78 10 0 chr6 14131746 14131952 -175147602 - AluSg/x SINE Alu -5 307 100 2178 148 71 34 chr6 14131952 14132114 -175147440 - MSTA LTR MaLR -270 158 3 1053 174 31 2 chr6 14132251 14132518 -175147036 + MER2 DNA MER2_type 21 345 0 188 35 35 0 chr6 14134639 14134668 -175144886 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 14135728 14135750 -175143804 + AT_rich Low_complexity Low_complexity 1 22 0 296 287 78 17 chr6 14136396 14136511 -175143043 + MIR3 SINE MIR 84 205 -3 2404 76 0 10 chr6 14137232 14137546 -175142008 + AluSx SINE Alu 1 311 -1 195 314 88 66 chr6 14137837 14137974 -175141580 - MIR3 SINE MIR -67 141 2 1716 161 7 7 chr6 14138414 14138706 -175140848 + AluJo SINE Alu 7 298 -14 1806 156 0 17 chr6 14139418 14139720 -175139834 + AluSx SINE Alu 1 297 -15 459 36 0 0 chr6 14141480 14141536 -175138018 + AluY SINE Alu 2 57 -253 2005 135 0 10 chr6 14142014 14142325 -175137229 + AluSx SINE Alu 1 308 -4 420 224 146 57 chr6 14143666 14143912 -175135642 + L1MC5 LINE L1 7664 7931 -30 187 211 73 128 chr6 14143983 14144092 -175135462 + MIR SINE MIR 37 139 -69 2193 111 3 0 chr6 14144979 14145286 -175134268 + AluSq SINE Alu 2 309 -4 381 75 0 0 chr6 14145286 14145339 -175134215 + (TA)n Simple_repeat Simple_repeat 1 53 0 240 333 0 0 chr6 14147407 14147476 -175132078 - MIR SINE MIR -131 131 63 327 49 0 0 chr6 14148856 14148897 -175130657 + (T)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr6 14149550 14149572 -175129982 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr6 14151198 14151227 -175128327 + (A)n Simple_repeat Simple_repeat 1 29 0 2173 89 7 0 chr6 14151467 14151758 -175127796 - AluSc SINE Alu -16 293 1 1533 106 0 74 chr6 14151825 14152081 -175127473 - AluSx SINE Alu -75 237 1 554 227 169 7 chr6 14152282 14152436 -175127118 - MER5A DNA MER1_type -2 187 9 2112 105 3 0 chr6 14152728 14153024 -175126530 - AluSg SINE Alu -13 297 1 294 299 11 11 chr6 14153258 14153345 -175126209 + MIR3 SINE MIR 113 199 -9 1899 122 3 41 chr6 14153929 14154214 -175125340 + L1PB2 LINE L1 5842 6115 -36 2204 97 0 3 chr6 14154214 14154514 -175125040 + AluSq SINE Alu 1 299 -14 1899 122 3 41 chr6 14154514 14154548 -175125006 + L1PB2 LINE L1 6115 6149 -2 464 287 168 10 chr6 14155160 14155369 -175124185 - MIR SINE MIR -19 243 2 198 0 0 0 chr6 14156139 14156161 -175123393 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1737 133 28 28 chr6 14157969 14158255 -175121299 + AluJo SINE Alu 5 290 -22 255 202 220 64 chr6 14158441 14158550 -175121004 - MIR3 SINE MIR -46 162 37 624 273 103 86 chr6 14158651 14159138 -175120416 - MLT1J LTR MaLR -1 510 16 540 173 173 13 chr6 14159458 14159614 -175119940 + MER5A DNA MER1_type 9 189 0 301 302 43 65 chr6 14159772 14159911 -175119643 - MIR SINE MIR -1 261 126 296 280 168 28 chr6 14160064 14160207 -175119347 + MIR3 SINE MIR 30 192 -16 248 234 103 75 chr6 14161276 14161383 -175118171 - L2 LINE L2 -8 3305 3196 1088 198 53 20 chr6 14161422 14161669 -175117885 + MLT1A1 LTR MaLR 6 260 -105 271 275 67 54 chr6 14161981 14162130 -175117424 - MIR SINE MIR -46 216 66 279 271 158 38 chr6 14162326 14162459 -175117095 + L2 LINE L2 3123 3271 -1 230 224 45 0 chr6 14164037 14164104 -175115450 + MER21A LTR ERV1 124 193 -738 24 0 0 0 chr6 14164811 14164835 -175114719 + AT_rich Low_complexity Low_complexity 1 24 0 697 268 35 18 chr6 14166093 14166321 -175113233 + MIR SINE MIR 28 259 -3 478 191 11 22 chr6 14168677 14168766 -175110788 + MER81 DNA DNA 27 114 0 433 329 78 88 chr6 14169467 14169762 -175109792 - L2 LINE L2 -8 3264 2973 539 273 14 28 chr6 14170062 14170205 -175109349 + L2 LINE L2 3173 3313 0 314 286 129 0 chr6 14170394 14170565 -175108989 - L1ME4a LINE L1 -104 6017 5825 1465 252 57 21 chr6 14170633 14171070 -175108484 + L1MC4a LINE L1 5352 5804 -2004 2494 77 0 0 chr6 14171097 14171409 -175108145 + AluSx SINE Alu 1 312 0 482 281 31 6 chr6 14171452 14171612 -175107942 + L1MC4a LINE L1 5796 5959 -1849 203 216 0 39 chr6 14172450 14172501 -175107053 - MIR SINE MIR -62 146 98 428 266 43 29 chr6 14172501 14172708 -175106846 + L1ME LINE L1 4635 4844 -1302 231 190 0 0 chr6 14172709 14172767 -175106787 + (TA)n Simple_repeat Simple_repeat 2 59 0 428 167 60 12 chr6 14172846 14172930 -175106624 + MIR SINE MIR 64 151 -111 2188 95 0 16 chr6 14173179 14173485 -175106069 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr6 14173498 14173521 -175106033 + AT_rich Low_complexity Low_complexity 1 23 0 1657 152 58 32 chr6 14173688 14173997 -175105557 - MER2 DNA MER2_type -27 318 2 518 251 61 39 chr6 14174038 14174269 -175105285 + L1ME LINE L1 5371 5606 -560 473 296 17 11 chr6 14174469 14174645 -175104909 - MER5B DNA MER1_type -1 177 1 1889 68 64 0 chr6 14174746 14175010 -175104544 + AluY SINE Alu 26 306 -5 346 319 53 68 chr6 14175757 14175927 -175103627 + MLT1J LTR MaLR 1 172 -339 2345 149 13 62 chr6 14175927 14176210 -175103344 + Tigger2a DNA MER2_type 2 256 -2452 1967 136 0 13 chr6 14176210 14176520 -175103034 + AluSx SINE Alu 1 306 -6 2345 149 13 62 chr6 14176520 14176691 -175102863 + Tigger2a DNA MER2_type 256 434 0 346 319 53 68 chr6 14176691 14176931 -175102623 + MLT1J LTR MaLR 172 405 -106 680 231 0 14 chr6 14177089 14177232 -175102322 + MER58B DNA MER1_type 195 335 -6 2487 153 56 19 chr6 14178649 14179062 -175100492 + MSTC LTR MaLR 1 428 0 1732 189 175 21 chr6 14179521 14179958 -175099596 + L1MD3 LINE L1 6972 7340 -655 2191 112 0 0 chr6 14179958 14180270 -175099284 + AluSp SINE Alu 1 312 -1 1732 189 175 21 chr6 14180270 14180560 -175098994 + L1MD3 LINE L1 7340 7995 0 * 2988 193 21 121 chr6 14180558 14181498 -175098056 + L1MC4 LINE L1 7209 7995 0 200 331 25 50 chr6 14181502 14181623 -175097931 - L2 LINE L2 -482 2832 2715 263 280 30 10 chr6 14182199 14182299 -175097255 - MLT1E2 LTR MaLR -277 349 248 1575 155 24 76 chr6 14182733 14183062 -175096492 + AluJb SINE Alu 1 312 0 886 262 34 17 chr6 14183110 14183347 -175096207 + MIR SINE MIR 20 260 -2 2137 93 10 10 chr6 14183849 14184160 -175095394 + AluSx SINE Alu 1 311 -1 599 275 58 5 chr6 14184631 14184820 -175094734 + MIR SINE MIR 49 247 -15 2142 90 0 10 chr6 14184893 14185205 -175094349 - AluSc SINE Alu 0 309 1 421 294 118 6 chr6 14185490 14185660 -175093894 - MIR3 SINE MIR 0 208 20 1910 150 7 0 chr6 14186158 14186464 -175093090 + AluSx SINE Alu 1 308 -4 424 308 92 0 chr6 14186545 14186675 -175092879 - MIR SINE MIR -71 191 50 2125 126 0 0 chr6 14186958 14187260 -175092294 + AluSx SINE Alu 1 302 -10 303 234 9 47 chr6 14188143 14188250 -175091304 + L1ME4a LINE L1 5989 6091 -30 258 105 0 0 chr6 14189279 14189317 -175090237 + (CCG)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr6 14189338 14189363 -175090191 + GC_rich Low_complexity Low_complexity 1 25 0 663 177 34 14 chr6 14189740 14189887 -175089667 - MER89 LTR ERV1 -409 150 1 409 233 110 43 chr6 14189888 14190051 -175089503 - MER5C DNA MER1_type -81 243 70 568 227 22 70 chr6 14190512 14190678 -175088876 - L2 LINE L2 -25 3288 3130 2076 98 11 0 chr6 14190678 14190964 -175088590 + AluSq SINE Alu 1 289 -24 568 227 22 70 chr6 14190964 14190982 -175088572 - L2 LINE L2 -183 3130 3113 216 267 33 0 chr6 14191010 14191070 -175088484 + MIR SINE MIR 174 235 -27 1686 219 66 20 chr6 14191096 14191535 -175088019 - MER65C LTR ERV1 0 461 3 1003 251 83 74 chr6 14191652 14192031 -175087523 + L2 LINE L2 2665 3125 -188 2277 77 7 3 chr6 14192031 14192331 -175087223 - AluSq SINE Alu -12 301 1 1003 251 83 74 chr6 14192331 14192521 -175087033 + L2 LINE L2 3125 3312 -1 249 146 83 0 chr6 14192808 14192856 -175086698 - L3 LINE CR1 -1 1576 1525 541 279 0 7 chr6 14194096 14194243 -175085311 + L1ME LINE L1 47 192 -5878 777 240 8 60 chr6 14194441 14194645 -175084909 - L1M4 LINE L1 -2525 3621 3433 2195 108 0 3 chr6 14194645 14194951 -175084603 + AluSq SINE Alu 1 305 -8 777 240 8 60 chr6 14194951 14195013 -175084541 - L1M4 LINE L1 -2713 3433 3369 1986 124 57 14 chr6 14195020 14195385 -175084169 - L1MA8 LINE L1 -174 6117 5743 889 175 12 0 chr6 14195461 14195621 -175083933 - L1MA8 LINE L1 -529 5771 5610 2581 33 0 0 chr6 14196227 14196527 -175083027 + AluY SINE Alu 2 301 -10 1468 147 55 29 chr6 14196586 14196858 -175082696 + AluJo SINE Alu 3 281 -31 23 68 0 0 chr6 14196859 14196903 -175082651 + AT_rich Low_complexity Low_complexity 1 44 0 2416 133 0 0 chr6 14197017 14197378 -175082176 + MER46B DNA MER2_type 1 236 0 2105 111 3 3 chr6 14197706 14198012 -175081542 + AluSx SINE Alu 1 306 -6 190 302 94 31 chr6 14198025 14198121 -175081433 - MIR SINE MIR -33 229 128 2252 107 0 0 chr6 14198325 14198635 -175080919 - AluSx SINE Alu -2 310 1 745 204 158 0 chr6 14198693 14198889 -175080665 + MER5C DNA MER1_type 1 227 -97 1901 143 3 3 chr6 14199433 14199727 -175079827 + AluJb SINE Alu 5 298 -14 189 156 156 0 chr6 14200238 14200283 -175079271 - L2 LINE L2 0 3272 3221 455 291 28 7 chr6 14200819 14200960 -175078594 + MIR SINE MIR 70 213 -49 370 242 36 85 chr6 14201307 14201472 -175078082 - L2 LINE L2 -1 3312 3156 1309 286 156 22 chr6 14201541 14202119 -175077435 - L2 LINE L2 -393 2921 2267 1464 258 103 58 chr6 14202119 14202855 -175076699 + LTR41 LTR ERVL 5 793 -2 1590 261 150 14 chr6 14202855 14203502 -175076052 - L2 LINE L2 -1037 2277 1543 527 289 68 43 chr6 14203768 14203841 -175075713 + MIR SINE MIR 22 92 -170 183 42 0 0 chr6 14203841 14203865 -175075689 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 527 289 68 43 chr6 14203865 14204026 -175075528 + MIR SINE MIR 92 262 0 2276 99 0 3 chr6 14204072 14204385 -175075169 - AluSx SINE Alu 0 312 1 2265 115 33 16 chr6 14204589 14204953 -175074601 + MSTA LTR MaLR 1 370 -58 570 319 114 19 chr6 14204948 14205308 -175074246 + MLT1J LTR MaLR 110 503 -8 * 2042 97 4 4 chr6 14205671 14205969 -175073585 - AluSc SINE Alu 0 298 1 255 329 0 13 chr6 14206810 14206889 -175072665 + MIR SINE MIR 49 126 -136 192 40 0 0 chr6 14208237 14208262 -175071292 + (T)n Simple_repeat Simple_repeat 1 25 0 2113 107 3 0 chr6 14208433 14208732 -175070822 + AluSx SINE Alu 1 300 -12 345 275 47 129 chr6 14209122 14209315 -175070239 - MIR3 SINE MIR -27 181 5 1961 120 0 0 chr6 14209443 14209750 -175069804 - AluSq SINE Alu 0 307 1 628 208 132 19 chr6 14209753 14209912 -175069642 + MER5B DNA MER1_type 2 178 0 871 134 0 15 chr6 14209929 14210063 -175069491 - FLAM_C SINE Alu -1 132 1 2770 84 3 3 chr6 14210085 14210440 -175069114 - MER1A DNA MER1_type 0 529 175 230 158 0 0 chr6 14210438 14210476 -175069078 - MER1A DNA MER1_type -489 38 1 * 594 182 182 14 chr6 14210530 14210678 -175068876 - MER5A DNA MER1_type -16 173 1 320 62 0 0 chr6 14212629 14212677 -175066877 - L1MB3 LINE L1 0 6183 6136 1788 151 3 22 chr6 14212680 14212991 -175066563 - AluSx SINE Alu -7 305 1 25 0 0 0 chr6 14212997 14213022 -175066532 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 14213097 14213132 -175066422 + AT_rich Low_complexity Low_complexity 1 35 0 185 247 0 26 chr6 14213132 14213209 -175066345 + (CATA)n Simple_repeat Simple_repeat 2 76 0 241 163 0 0 chr6 14213219 14213268 -175066286 - L1MC4 LINE L1 -1342 6700 6652 330 118 0 0 chr6 14213281 14213332 -175066222 + MLT2A1 LTR ERVL 394 444 0 951 165 19 0 chr6 14213351 14213509 -175066045 + MSTD LTR MaLR 234 394 -2 1429 186 0 8 chr6 14213616 14213864 -175065690 - AluJo SINE Alu -25 287 42 579 280 37 0 chr6 14213864 14214107 -175065447 - Charlie4a DNA MER1_type -72 436 185 922 189 52 24 chr6 14214107 14214319 -175065235 + AluJo SINE Alu 87 304 -8 868 178 61 11 chr6 14214323 14214503 -175065051 - Charlie4a DNA MER1_type -319 189 1 279 0 0 0 chr6 14215033 14215064 -175064490 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1852 139 0 23 chr6 14217883 14218186 -175061368 + AluJb SINE Alu 2 297 -15 237 307 129 0 chr6 14218359 14218460 -175061094 + MIR3 SINE MIR 88 201 -7 2291 84 3 0 chr6 14220503 14220800 -175058754 + AluSg SINE Alu 1 298 -12 283 227 53 40 chr6 14220851 14220926 -175058628 + MIR SINE MIR 55 130 -78 286 233 47 47 chr6 14220947 14221033 -175058521 + MIR SINE MIR 20 105 -103 476 300 32 25 chr6 14221721 14221919 -175057635 + MIR SINE MIR 20 218 -44 21 0 0 0 chr6 14222943 14222964 -175056590 + AT_rich Low_complexity Low_complexity 1 21 0 2106 123 0 0 chr6 14223019 14223327 -175056227 + AluY SINE Alu 1 308 -3 339 113 0 0 chr6 14224049 14224102 -175055452 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 0 0 0 chr6 14224601 14224625 -175054929 + (T)n Simple_repeat Simple_repeat 1 24 0 1437 130 63 76 chr6 14226799 14226915 -175052639 + AluJo SINE Alu 1 117 -195 405 0 0 0 chr6 14226915 14226960 -175052594 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1437 130 63 76 chr6 14226960 14227158 -175052396 + AluJo SINE Alu 117 311 -1 1189 155 22 104 chr6 14227210 14227382 -175052172 - AluJo SINE Alu -3 309 173 2177 94 0 0 chr6 14227382 14227670 -175051884 - AluSg SINE Alu -22 288 1 1189 155 22 104 chr6 14227670 14227814 -175051740 - AluJo SINE Alu -139 173 19 23 0 0 0 chr6 14227960 14227983 -175051571 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr6 14228132 14228184 -175051370 + AT_rich Low_complexity Low_complexity 1 52 0 32 43 0 0 chr6 14229727 14229773 -175049781 + AT_rich Low_complexity Low_complexity 1 46 0 380 92 10 194 chr6 14229993 14230091 -175049463 - MADE1 DNA Mariner 0 80 1 181 325 32 81 chr6 14230107 14230230 -175049324 + L2 LINE L2 3145 3261 -11 773 241 162 50 chr6 14230330 14230437 -175049117 + L1ME4a LINE L1 5634 5728 -393 1419 174 94 4 chr6 14230437 14230713 -175048841 + AluJo SINE Alu 1 301 -11 773 241 162 50 chr6 14230713 14231044 -175048510 + L1ME4a LINE L1 5728 6121 0 357 109 0 0 chr6 14231721 14231776 -175047778 + (TG)n Simple_repeat Simple_repeat 2 56 0 340 303 105 70 chr6 14234118 14234346 -175045208 - L2 LINE L2 -49 3223 2988 324 0 0 0 chr6 14234775 14234811 -175044743 + (CA)n Simple_repeat Simple_repeat 2 37 0 701 231 89 62 chr6 14235054 14235279 -175044275 - MIR SINE MIR -3 259 29 390 21 0 0 chr6 14235305 14235352 -175044202 + (TG)n Simple_repeat Simple_repeat 2 48 0 1945 135 3 10 chr6 14235352 14235648 -175043906 - AluSx SINE Alu -18 294 1 1525 103 7 73 chr6 14235657 14235771 -175043783 - L1MA5A LINE L1 -3 6294 6174 2054 112 3 26 chr6 14235771 14236075 -175043479 - AluSp SINE Alu -12 301 5 1525 103 7 73 chr6 14236075 14236233 -175043321 - L1MA5A LINE L1 -123 6174 6040 418 274 51 57 chr6 14238068 14238243 -175041311 + Charlie8 DNA MER1_type 92 265 -2152 1804 189 177 16 chr6 14238265 14238688 -175040866 - MLT1E2 LTR MaLR 0 626 136 294 268 100 22 chr6 14239142 14239284 -175040270 - MIR SINE MIR -38 170 21 438 295 89 67 chr6 14240247 14240772 -175038782 + LTR67 LTR ERVL 2 538 -19 182 405 9 9 chr6 14240885 14240996 -175038558 + MIR3 SINE MIR 6 116 -92 * 303 257 177 0 chr6 14240979 14241092 -175038462 + MIR SINE MIR 119 251 -11 188 304 72 43 chr6 14241193 14241262 -175038292 + MIR SINE MIR 8 78 -184 181 128 128 0 chr6 14242379 14242418 -175037136 - MIR SINE MIR -117 145 102 408 88 0 0 chr6 14242934 14242991 -175036563 + (CA)n Simple_repeat Simple_repeat 2 58 0 2624 103 5 14 chr6 14243311 14243678 -175035876 + THE1B LTR MaLR 1 364 0 4173 55 2 0 chr6 14243735 14244241 -175035313 - L1PA10 LINE L1 -11 6157 5651 1393 249 40 17 chr6 14244346 14244683 -175034871 + MER119 DNA MER1_type 1 345 -238 1053 138 12 0 chr6 14244683 14244843 -175034711 + MER93b LTR ERV1 1 162 -211 649 208 8 0 chr6 14244854 14244974 -175034580 + MER93a LTR ERV1 282 402 0 782 201 41 55 chr6 14244989 14245017 -175034537 + MER119 DNA MER1_type 367 394 -189 2036 105 3 3 chr6 14245017 14245295 -175034259 + AluSx SINE Alu 7 287 -25 243 61 0 0 chr6 14245295 14245328 -175034226 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 782 201 41 55 chr6 14245335 14245525 -175034029 + MER119 DNA MER1_type 394 582 -1 906 115 0 0 chr6 14247129 14247259 -175032295 - AluSp/q SINE Alu -12 301 172 13564 61 2 1 chr6 14248348 14250843 -175028711 + L1PA6 LINE L1 3652 6153 -1 180 0 0 0 chr6 14251344 14251364 -175028190 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1012 90 0 0 chr6 14251377 14251510 -175028044 + AluJo/FLAM SINE Alu 1 133 -179 1548 184 20 3 chr6 14251512 14251811 -175027743 + AluJo SINE Alu 1 304 -8 435 173 0 0 chr6 14251814 14251895 -175027659 + GA-rich Low_complexity Low_complexity 4 84 0 535 243 18 0 chr6 14251895 14252006 -175027548 + MIR SINE MIR 144 256 -6 374 329 7 7 chr6 14252149 14252289 -175027265 + L3b LINE CR1 1209 1348 -235 1773 94 0 0 chr6 14252361 14252596 -175026958 + AluSg/x SINE Alu 76 310 0 564 284 135 18 chr6 14252710 14252932 -175026622 + MIR SINE MIR 2 249 -13 1479 172 79 7 chr6 14253151 14253442 -175026112 + AluJo SINE Alu 1 312 0 21 36 0 0 chr6 14253519 14253547 -175026007 + AT_rich Low_complexity Low_complexity 1 28 0 1745 171 0 20 chr6 14253842 14254141 -175025413 + AluJo SINE Alu 1 293 -19 2107 126 0 16 chr6 14254142 14254459 -175025095 + AluSx SINE Alu 1 312 0 2406 62 7 0 chr6 14254837 14255145 -175024409 - AluY SINE Alu -1 310 1 229 237 230 22 chr6 14255285 14255420 -175024134 + L1MC4a LINE L1 5815 5977 -1831 1775 150 0 55 chr6 14255535 14255710 -175023844 - AluJo SINE Alu -4 308 158 2204 89 7 0 chr6 14255710 14256001 -175023553 - AluSx SINE Alu -19 293 1 1775 150 0 55 chr6 14256001 14256151 -175023403 - AluJo SINE Alu -154 158 1 241 170 0 21 chr6 14256158 14256205 -175023349 - AluJ/FLAM SINE Alu -1 132 87 22 56 0 0 chr6 14256255 14256291 -175023263 + AT_rich Low_complexity Low_complexity 1 36 0 395 246 156 8 chr6 14256604 14256726 -175022828 + MIR SINE MIR 69 208 -54 381 279 211 20 chr6 14257238 14257442 -175022112 - MIR SINE MIR 0 262 20 1830 201 113 14 chr6 14257578 14258010 -175021544 + MLT1D LTR MaLR 31 505 0 623 137 0 0 chr6 14258211 14258306 -175021248 - AluJ/FLAM SINE Alu -216 96 2 465 216 0 17 chr6 14258308 14258424 -175021130 + L1ME2 LINE L1 5579 5692 -474 459 218 36 9 chr6 14259197 14259307 -175020247 + MIR SINE MIR 92 204 -58 512 180 78 5 chr6 14259454 14259584 -175019970 + L1ME2 LINE L1 6039 6334 0 2249 217 48 25 chr6 14260062 14260081 -175019473 + L1ME1 LINE L1 5560 5577 -589 1327 184 63 57 chr6 14260081 14260380 -175019174 - AluJb SINE Alu 0 302 2 2249 217 48 25 chr6 14260380 14260778 -175018776 + L1ME1 LINE L1 5577 5996 -170 186 103 0 0 chr6 14260778 14260807 -175018747 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 2249 217 48 25 chr6 14260807 14260978 -175018576 + L1ME1 LINE L1 5996 6162 -4 305 325 29 53 chr6 14262261 14262467 -175017087 + L1MC5 LINE L1 7478 7678 -283 208 222 0 0 chr6 14262467 14262503 -175017051 + polypurine Low_complexity Low_complexity 4 39 0 4411 197 25 14 chr6 14262608 14264037 -175015517 + L1MB7 LINE L1 4345 5793 -391 1496 135 66 143 chr6 14264037 14264178 -175015376 - MER7A DNA MER2_type -2692 346 196 2307 82 3 13 chr6 14264178 14264493 -175015061 - AluSx SINE Alu 0 312 1 1496 135 66 143 chr6 14264493 14264728 -175014826 - MER7A DNA MER2_type -2842 196 1 4411 197 25 14 chr6 14264728 14265040 -175014514 + L1MB7 LINE L1 5793 6100 -84 254 233 41 55 chr6 14265363 14265436 -175014118 - MIR3 SINE MIR -46 162 91 249 339 161 0 chr6 14265537 14265667 -175013887 + MIR SINE MIR 49 199 -63 23 0 0 0 chr6 14265985 14266008 -175013546 + AT_rich Low_complexity Low_complexity 1 23 0 1160 177 139 4 chr6 14266348 14266614 -175012940 - MER33 DNA MER1_type -22 302 1 837 203 31 6 chr6 14267958 14268121 -175011433 + MLT1J LTR MaLR 30 196 -315 263 255 64 11 chr6 14268166 14268260 -175011294 + MLT1J LTR MaLR 291 389 -122 1854 124 4 4 chr6 14269877 14270151 -175009403 + AluSx SINE Alu 7 280 -32 1034 97 23 6 chr6 14270157 14270332 -175009222 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 542 167 9 0 chr6 14270355 14270463 -175009091 + GA-rich Low_complexity Low_complexity 4 112 0 306 272 115 16 chr6 14270464 14270707 -175008847 - HAL1b LINE L1 -28 1320 1054 2199 105 0 6 chr6 14270708 14271021 -175008533 + AluY SINE Alu 1 311 0 180 0 0 0 chr6 14271074 14271094 -175008460 + (T)n Simple_repeat Simple_repeat 1 20 0 1614 142 12 0 chr6 14271391 14271645 -175007909 + AluSp SINE Alu 38 294 -19 399 128 35 0 chr6 14271646 14271732 -175007822 + GA-rich Low_complexity Low_complexity 1 89 0 2205 103 0 0 chr6 14272360 14272660 -175006894 - AluSx SINE Alu -12 300 1 763 280 58 0 chr6 14272942 14273167 -175006387 + MIR SINE MIR 21 258 -4 2279 130 60 0 chr6 14273199 14273567 -175005987 + MLT1B LTR MaLR 1 390 0 549 264 191 14 chr6 14275565 14275785 -175003769 + MIR SINE MIR 3 261 -1 522 323 97 56 chr6 14276904 14277022 -175002532 - L2 LINE L2 0 3313 3201 1694 136 74 52 chr6 14277022 14277389 -175002165 + THE1C LTR MaLR 1 375 0 522 323 97 56 chr6 14277389 14278004 -175001550 - L2 LINE L2 -112 3201 2494 2148 51 0 0 chr6 14278243 14278500 -175001054 - AluY SINE Alu -34 277 21 267 347 59 41 chr6 14279744 14279914 -174999640 - MIR3 SINE MIR -6 202 30 676 315 85 32 chr6 14280436 14281179 -174998375 + L2 LINE L2 2505 3295 -18 384 323 103 27 chr6 14281856 14282079 -174997475 + L1ME4a LINE L1 5518 5757 -364 304 257 29 0 chr6 14282081 14282151 -174997403 + MIR SINE MIR 187 258 -4 1808 149 0 32 chr6 14282273 14282589 -174996965 + AluJo SINE Alu 1 306 -6 194 161 0 18 chr6 14283153 14283209 -174996345 + (CA)n Simple_repeat Simple_repeat 1 55 0 235 236 0 18 chr6 14284272 14284327 -174995227 + Tigger5 DNA MER2_type 2 55 -2268 397 200 33 11 chr6 14284332 14284422 -174995132 + Tigger5 DNA MER2_type 2231 2322 -1 206 381 81 40 chr6 14284844 14284913 -174994641 - L3 LINE CR1 -33 1544 1479 2090 128 3 0 chr6 14284913 14285225 -174994329 - AluSp SINE Alu 0 313 1 206 381 81 40 chr6 14285225 14285378 -174994176 - L3 LINE CR1 -98 1479 1313 213 39 0 0 chr6 14285410 14285436 -174994118 + (ATG)n Simple_repeat Simple_repeat 3 28 0 540 246 175 52 chr6 14285576 14285844 -174993710 + L1ME4a LINE L1 5787 6087 -34 1017 234 4 58 chr6 14285950 14286021 -174993533 - MIR SINE MIR -8 254 181 1787 173 0 3 chr6 14286021 14286327 -174993227 - AluJo SINE Alu -7 305 1 1017 234 4 58 chr6 14286327 14286512 -174993042 - MIR SINE MIR -81 181 12 1134 68 115 133 chr6 14286839 14287073 -174992481 + MER30 DNA MER1_type 1 230 0 552 267 68 0 chr6 14287920 14288081 -174991473 + MIR SINE MIR 12 183 -79 1697 160 32 0 chr6 14288440 14288722 -174990832 + AluJb SINE Alu 1 291 -21 397 219 103 32 chr6 14290718 14290873 -174988681 - MER112 DNA MER1_type -23 237 72 217 227 53 13 chr6 14290878 14290953 -174988601 + (CATA)n Simple_repeat Simple_repeat 3 80 0 663 271 31 75 chr6 14290961 14291216 -174988338 + MLT1G1 LTR MaLR 1 178 -352 2042 124 0 0 chr6 14291216 14291541 -174988013 + AluSx SINE Alu 1 312 0 663 271 31 75 chr6 14291541 14291581 -174987973 + MLT1G1 LTR MaLR 178 218 -312 415 299 21 42 chr6 14292031 14292175 -174987379 - MIR SINE MIR -119 143 3 463 234 128 14 chr6 14292304 14292458 -174987096 - MIR SINE MIR -63 145 7 1478 155 89 24 chr6 14293277 14293568 -174985986 - AluJo SINE Alu -2 310 1 1104 161 40 67 chr6 14294135 14294180 -174985374 - MER20 DNA MER1_type -1 218 173 2100 113 7 3 chr6 14294180 14294480 -174985074 - AluSq SINE Alu -12 301 1 1104 161 40 67 chr6 14294480 14294658 -174984896 - MER20 DNA MER1_type -46 173 1 215 133 0 44 chr6 14296356 14296401 -174983153 + L2 LINE L2 2934 2976 -337 531 280 31 16 chr6 14297485 14297728 -174981826 - L1MC4a LINE L1 -193 5928 5679 1172 190 0 0 chr6 14298452 14298652 -174980902 + MER3 DNA MER1_type 10 209 0 217 206 250 0 chr6 14298910 14298978 -174980576 - L2 LINE L2 0 3272 3188 25 0 0 0 chr6 14299621 14299646 -174979908 + AT_rich Low_complexity Low_complexity 1 25 0 192 289 58 0 chr6 14299750 14299802 -174979752 - MIR SINE MIR -65 143 89 401 213 25 0 chr6 14300570 14300650 -174978904 + FLAM_A SINE Alu 2 83 -59 452 248 32 0 chr6 14300674 14300799 -174978755 - MIR SINE MIR -12 250 122 587 283 28 39 chr6 14300834 14301014 -174978540 - MER5B DNA MER1_type 0 178 1 256 277 76 50 chr6 14301014 14301103 -174978451 - MIR SINE MIR -169 93 2 2162 108 3 7 chr6 14301247 14301552 -174978002 - AluSq SINE Alu -9 304 1 226 169 39 39 chr6 14302546 14302623 -174976931 + L1MA8 LINE L1 6090 6166 -125 3254 138 16 67 chr6 14302628 14303236 -174976318 - MER6A DNA MER2_type -1 604 28 412 89 0 0 chr6 14303239 14303295 -174976259 + L1MA8 LINE L1 6168 6223 -68 1166 189 13 21 chr6 14303295 14303533 -174976021 + Tigger1 DNA MER2_type 1 236 -2182 * 8756 97 38 8 chr6 14303511 14304595 -174974959 + Tigger1 DNA MER2_type 960 2087 -331 2266 102 0 0 chr6 14304595 14304900 -174974654 + AluSq SINE Alu 1 305 -8 8756 97 38 8 chr6 14304900 14305048 -174974506 + Tigger1 DNA MER2_type 2087 2229 -189 3473 116 6 6 chr6 14305050 14305558 -174973996 + L1PA14 LINE L1 5620 6127 -34 21 0 0 0 chr6 14305686 14305707 -174973847 + AT_rich Low_complexity Low_complexity 1 21 0 954 161 102 0 chr6 14305736 14305922 -174973632 + Tigger1 DNA MER2_type 2213 2417 -1 235 178 0 27 chr6 14305922 14305995 -174973559 + L1MA7 LINE L1 6221 6291 0 232 125 25 25 chr6 14306692 14306732 -174972822 + L1MCa LINE L1 482 521 -5905 1511 192 84 9 chr6 14308148 14308481 -174971073 - MLT1C LTR MaLR -2 465 108 2199 108 0 13 chr6 14308516 14308832 -174970722 + AluSx SINE Alu 1 312 0 1750 142 0 14 chr6 14310086 14310368 -174969186 + AluJo SINE Alu 21 298 -14 2215 133 36 30 chr6 14310580 14310942 -174968612 + THE1B LTR MaLR 1 364 0 2571 197 24 37 chr6 14311436 14311983 -174967571 - MER68 LTR ERV1 0 562 23 259 226 161 21 chr6 14312178 14312271 -174967283 - MIR3 SINE MIR -10 198 93 239 111 44 22 chr6 14312722 14312767 -174966787 - L1PA15-16 LINE L1 -6103 746 701 512 280 65 23 chr6 14313229 14313443 -174966111 + L1MC4 LINE L1 7635 7857 -185 983 185 6 17 chr6 14313457 14313635 -174965919 - MLT1A1 LTR MaLR -8 357 182 259 149 0 0 chr6 14313829 14313876 -174965678 + L1MC4 LINE L1 7581 7627 -415 189 307 53 13 chr6 14313883 14313958 -174965596 + MIR SINE MIR 65 142 -66 377 248 43 8 chr6 14314061 14314178 -174965376 - MER46C DNA MER2_type -159 179 59 1405 192 84 9 chr6 14366052 14366385 -174913169 - MLT1C LTR MaLR -2 465 108 2357 108 0 13 chr6 14366420 14366736 -174912818 + AluSx SINE Alu 1 312 0 1888 142 0 14 chr6 14367991 14368273 -174911281 + AluJo SINE Alu 21 298 -14 2241 133 36 30 chr6 14368486 14368848 -174910706 + THE1B LTR MaLR 1 364 0 2409 197 24 37 chr6 14369342 14369889 -174909665 - MER68 LTR ERV1 0 562 23 265 226 161 21 chr6 14370084 14370177 -174909377 - MIR3 SINE MIR -10 198 93 484 280 65 23 chr6 14371135 14371349 -174908205 + L1MC4 LINE L1 7635 7857 -185 935 185 6 17 chr6 14371363 14371541 -174908013 - MLT1A1 LTR MaLR -8 357 182 245 149 0 0 chr6 14371735 14371782 -174907772 + L1MC4 LINE L1 7581 7627 -415 210 293 53 13 chr6 14371789 14371864 -174907690 + MIR SINE MIR 65 142 -66 366 241 76 35 chr6 14371967 14372112 -174907442 - MER46C DNA MER2_type -159 179 29 322 381 42 24 chr6 14372225 14372393 -174907161 + L2 LINE L2 3102 3272 0 459 270 175 0 chr6 14372622 14372822 -174906732 - MIR SINE MIR -6 256 22 2521 158 42 7 chr6 14372869 14373318 -174906236 + MLT1C LTR MaLR 3 467 0 237 83 0 0 chr6 14374074 14374110 -174905444 + (CA)n Simple_repeat Simple_repeat 2 37 0 2084 131 0 35 chr6 14375129 14375441 -174904113 - AluJb SINE Alu -11 301 1 185 297 149 0 chr6 14376237 14376311 -174903243 + L2 LINE L2 3174 3258 -14 2023 128 0 3 chr6 14377072 14377383 -174902171 - AluSg SINE Alu 0 310 1 530 232 49 21 chr6 14377486 14377628 -174901926 + MIR SINE MIR 35 180 -82 297 0 0 0 chr6 14377724 14377757 -174901797 + (A)n Simple_repeat Simple_repeat 1 33 0 1154 230 52 68 chr6 14377947 14378090 -174901464 + MSTD LTR MaLR 1 145 -251 6273 82 16 40 chr6 14378090 14378825 -174900729 + L1PA10 LINE L1 4759 5452 -716 2332 111 0 0 chr6 14378825 14379122 -174900432 + AluSx SINE Alu 4 300 -12 6273 82 16 40 chr6 14379122 14379812 -174899742 + L1PA10 LINE L1 5452 6157 -11 1154 230 52 68 chr6 14379812 14380068 -174899486 + MSTD LTR MaLR 145 394 -2 353 255 226 13 chr6 14380946 14381100 -174898454 + MIR SINE MIR 4 192 -60 779 210 13 0 chr6 14382327 14382484 -174897070 - MER3 DNA MER1_type -50 159 1 327 177 78 106 chr6 14382551 14382692 -174896862 - MER112 DNA MER1_type -34 226 90 1567 201 29 27 chr6 14383495 14383832 -174895722 + MLT2D LTR ERVL 1 357 -40 270 0 0 0 chr6 14383832 14383862 -174895692 + (TG)n Simple_repeat Simple_repeat 2 31 0 1567 201 29 27 chr6 14383862 14383890 -174895664 + MLT2D LTR ERVL 357 383 -14 207 292 10 31 chr6 14383913 14384009 -174895545 + L2 LINE L2 2996 3089 -183 1457 72 106 0 chr6 14384089 14384297 -174895257 + MER30 DNA MER1_type 1 230 0 667 198 153 0 chr6 14384326 14384483 -174895071 + MER5A DNA MER1_type 9 189 0 661 234 0 0 chr6 14384507 14384648 -174894906 - MER5B DNA MER1_type -37 141 1 274 270 52 26 chr6 14384651 14384766 -174894788 - MIR SINE MIR -56 152 35 285 209 0 0 chr6 14385863 14385930 -174893624 + (CA)n Simple_repeat Simple_repeat 1 67 0 412 312 27 24 chr6 14386203 14386367 -174893187 - MIR3 SINE MIR -6 202 36 22 56 0 0 chr6 14387015 14387051 -174892503 + AT_rich Low_complexity Low_complexity 1 36 0 575 264 76 71 chr6 14387052 14387472 -174892082 - L1ME4a LINE L1 -66 6055 5634 228 291 68 29 chr6 14387544 14387647 -174891907 + MIR SINE MIR 24 131 -77 317 294 59 39 chr6 14388726 14388879 -174890675 + MIR SINE MIR 101 256 -6 1130 156 28 47 chr6 14390733 14390861 -174888693 + MER3 DNA MER1_type 2 126 -83 2827 71 3 0 chr6 14390861 14391215 -174888339 - THE1A LTR MaLR 0 355 1 1130 156 28 47 chr6 14391215 14391298 -174888256 + MER3 DNA MER1_type 126 209 0 206 261 0 0 chr6 14391306 14391352 -174888202 + L2 LINE L2 3222 3267 -5 481 206 46 15 chr6 14391448 14391579 -174887975 - MIR SINE MIR -85 177 43 2334 113 3 0 chr6 14393055 14393366 -174886188 + AluSp SINE Alu 2 313 0 3814 209 0 13 chr6 14394017 14394248 -174885306 + L1ME1 LINE L1 5270 5504 -680 2140 120 7 14 chr6 14394248 14394384 -174885170 + AluSx SINE Alu 1 136 -176 2158 94 0 40 chr6 14394384 14394719 -174884835 + AluSg SINE Alu 1 310 0 2140 120 7 14 chr6 14394719 14394874 -174884680 + AluSx SINE Alu 136 290 -22 3814 209 0 13 chr6 14394874 14395562 -174883992 + L1ME1 LINE L1 5504 6184 0 1026 115 120 11 chr6 14396119 14396159 -174883395 - MLT2D LTR ERVL 0 414 380 396 0 0 0 chr6 14396159 14396203 -174883351 + (TG)n Simple_repeat Simple_repeat 2 45 0 1026 115 120 11 chr6 14396203 14396270 -174883284 - MLT2D LTR ERVL -34 380 322 222 37 0 0 chr6 14396270 14396297 -174883257 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 1026 115 120 11 chr6 14396297 14396371 -174883183 - MLT2D LTR ERVL -92 322 212 24 0 0 0 chr6 14396579 14396603 -174882951 + AT_rich Low_complexity Low_complexity 1 24 0 2093 148 7 0 chr6 14396726 14397036 -174882518 + AluSx SINE Alu 1 312 0 2201 110 7 10 chr6 14397071 14397379 -174882175 - AluSq SINE Alu -6 307 1 24 32 0 0 chr6 14398004 14398035 -174881519 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr6 14398130 14398156 -174881398 + AT_rich Low_complexity Low_complexity 1 26 0 315 232 89 27 chr6 14398252 14398364 -174881190 - MIR SINE MIR -70 192 74 276 285 200 0 chr6 14399394 14399459 -174880095 + MER5A DNA MER1_type 33 84 -105 1576 167 104 0 chr6 14399459 14399728 -174879826 - AluJo SINE Alu -15 297 1 276 285 200 0 chr6 14399728 14399792 -174879762 + MER5A DNA MER1_type 84 188 -1 759 308 64 31 chr6 14399895 14400044 -174879510 - L2 LINE L2 0 3313 3170 192 40 0 0 chr6 14400044 14400069 -174879485 + (CAAG)n Simple_repeat Simple_repeat 3 27 0 759 308 64 31 chr6 14400069 14400500 -174879054 - L2 LINE L2 -143 3170 2704 234 0 0 0 chr6 14400500 14400526 -174879028 + (CA)n Simple_repeat Simple_repeat 2 27 0 759 308 64 31 chr6 14400526 14400611 -174878943 - L2 LINE L2 -609 2704 2623 736 228 74 89 chr6 14400724 14401118 -174878436 + L1ME4a LINE L1 5574 5961 -160 74 79 0 0 chr6 14401131 14401296 -174878258 + AT_rich Low_complexity Low_complexity 1 165 0 235 253 27 13 chr6 14401296 14401371 -174878183 + L1MC/D LINE L1 5853 5928 -1880 2175 115 0 3 chr6 14401392 14401678 -174877876 + AluSx SINE Alu 1 285 -27 228 86 0 0 chr6 14401678 14401713 -174877841 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 14401744 14401767 -174877787 + AT_rich Low_complexity Low_complexity 1 23 0 259 168 53 0 chr6 14401811 14401906 -174877648 + (TA)n Simple_repeat Simple_repeat 2 101 0 442 288 126 11 chr6 14402710 14402901 -174876653 + MIR SINE MIR 35 247 -15 21 36 0 0 chr6 14406196 14406224 -174873330 + GC_rich Low_complexity Low_complexity 1 28 0 191 59 0 29 chr6 14406621 14406655 -174872899 + (CCG)n Simple_repeat Simple_repeat 2 34 0 22 94 0 0 chr6 14406672 14406736 -174872818 + GC_rich Low_complexity Low_complexity 1 64 0 459 278 105 10 chr6 14406961 14407170 -174872384 - MIR SINE MIR -20 242 14 402 219 0 67 chr6 14407603 14407708 -174871846 + L2 LINE L2 3216 3313 0 743 233 90 9 chr6 14408259 14408482 -174871072 + MIR SINE MIR 12 252 -10 1448 183 30 34 chr6 14408647 14408942 -174870612 + AluJo SINE Alu 1 294 -18 975 277 132 19 chr6 14409057 14409625 -174869929 + L2 LINE L2 2332 3039 -274 186 43 0 0 chr6 14409625 14409648 -174869906 + (CA)n Simple_repeat Simple_repeat 2 24 0 975 277 132 19 chr6 14409648 14409955 -174869599 + L2 LINE L2 3039 3310 -3 2360 82 0 7 chr6 14410862 14411184 -174868370 - AluY SINE Alu 0 311 1 1071 157 41 20 chr6 14411378 14411575 -174867979 + AluJo SINE Alu 85 285 -27 24 67 0 0 chr6 14411577 14411622 -174867932 + AT_rich Low_complexity Low_complexity 1 45 0 889 145 0 0 chr6 14412219 14412350 -174867204 - FLAM_C SINE Alu -2 131 1 232 246 229 39 chr6 14412365 14412544 -174867010 - MIR SINE MIR -48 214 2 552 292 114 40 chr6 14412764 14413430 -174866124 + L2 LINE L2 2589 3313 0 2158 63 81 18 chr6 14413451 14413736 -174865818 - AluSx SINE Alu -9 303 1 258 151 66 142 chr6 14413854 14413960 -174865594 - L1MB3 LINE L1 -1 6179 6082 22 35 0 0 chr6 14414690 14414719 -174864835 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 14415630 14415651 -174863903 + (CA)n Simple_repeat Simple_repeat 2 22 0 1050 285 99 40 chr6 14415803 14416777 -174862777 + L1ME3 LINE L1 2639 3555 -2591 2343 57 7 0 chr6 14416777 14417081 -174862473 + AluY SINE Alu 1 306 0 1050 285 99 40 chr6 14417081 14417541 -174862013 + L1ME3 LINE L1 3555 3987 -2159 1693 112 123 11 chr6 14417541 14417810 -174861744 - AluSg1 SINE Alu -10 299 1 1050 285 99 40 chr6 14417810 14418092 -174861462 + L1ME3 LINE L1 3987 4507 -1639 426 218 122 131 chr6 14418183 14418528 -174861026 - MLT1H LTR MaLR 0 549 167 2197 104 0 10 chr6 14418528 14418827 -174860727 - AluSx SINE Alu -16 296 1 426 218 122 131 chr6 14418827 14418956 -174860598 - MLT1H LTR MaLR -382 167 38 352 264 56 34 chr6 14419028 14419206 -174860348 + L1ME3 LINE L1 4747 4928 -1218 1527 186 139 65 chr6 14419240 14419555 -174859999 + MLT1F LTR MaLR 27 392 -150 1756 172 69 31 chr6 14419555 14419595 -174859959 - MLT1A2 LTR MaLR 0 374 337 2359 74 0 17 chr6 14419595 14419915 -174859639 + AluSq SINE Alu 1 315 0 1756 172 69 31 chr6 14419915 14420231 -174859323 - MLT1A2 LTR MaLR -37 337 1 1527 186 139 65 chr6 14420231 14420395 -174859159 + MLT1F LTR MaLR 392 542 0 1019 299 92 30 chr6 14420549 14421121 -174858433 + L1ME3 LINE L1 5175 5790 -372 2126 129 0 16 chr6 14421121 14421431 -174858123 + AluSx SINE Alu 1 305 -7 1019 299 92 30 chr6 14421431 14421533 -174858021 + L1ME3 LINE L1 5790 5884 -278 183 80 0 0 chr6 14421600 14421625 -174857929 + (TG)n Simple_repeat Simple_repeat 2 26 0 44140 29 21 1 chr6 14421768 14427800 -174851754 + L1HS LINE L1 1 6155 0 922 241 86 79 chr6 14427815 14428221 -174851333 + MLT2B1 LTR ERVL 28 436 -84 305 190 69 9 chr6 14428224 14428340 -174851214 + (TA)n Simple_repeat Simple_repeat 1 123 0 369 289 118 20 chr6 14428351 14428555 -174850999 + L1MC/D LINE L1 5256 5479 -2329 276 257 40 20 chr6 14428641 14428793 -174850761 + (TA)n Simple_repeat Simple_repeat 2 156 0 915 120 16 0 chr6 14429289 14429414 -174850140 + AluJb SINE Alu 1 127 -185 31 0 0 0 chr6 14429414 14429445 -174850109 + AT_rich Low_complexity Low_complexity 1 31 0 601 239 35 82 chr6 14429453 14429771 -174849783 - L1ME4a LINE L1 -281 5840 5538 23 33 0 0 chr6 14429940 14429970 -174849584 + AT_rich Low_complexity Low_complexity 1 30 0 2518 84 20 0 chr6 14430762 14431108 -174848446 + L1PA13 LINE L1 5811 6163 0 212 0 36 0 chr6 14431205 14431233 -174848321 + (TA)n Simple_repeat Simple_repeat 2 30 0 828 178 6 31 chr6 14431237 14431400 -174848154 - AluJo SINE Alu -37 275 117 825 153 0 0 chr6 14431436 14431560 -174847994 - AluJo SINE Alu -188 124 1 249 281 0 0 chr6 14431587 14431651 -174847903 - L2 LINE L2 -4 3309 3246 254 284 27 0 chr6 14431821 14431895 -174847659 + MIR3 SINE MIR 117 192 -16 2392 97 0 0 chr6 14432047 14432345 -174847209 + AluSq SINE Alu 1 298 -15 189 0 0 0 chr6 14432345 14432366 -174847188 + (TA)n Simple_repeat Simple_repeat 2 22 0 234 0 0 0 chr6 14432566 14432592 -174846962 + (T)n Simple_repeat Simple_repeat 1 26 0 2110 251 35 21 chr6 14433354 14433924 -174845630 - L1ME3A LINE L1 -36 6134 5557 893 222 168 32 chr6 14434814 14435129 -174844425 + L1ME3A LINE L1 5781 6138 -32 424 179 26 0 chr6 14435143 14435221 -174844333 - AluSg/x SINE Alu -27 282 203 3293 161 137 59 chr6 14435222 14435984 -174843570 - LTR12 LTR ERV1 -1 825 5 2455 182 25 24 chr6 14436000 14436593 -174842961 - pTR5 LTR ERV1 -1094 1344 751 278 139 0 12 chr6 14436593 14436640 -174842914 - AluSq SINE Alu -95 208 171 1040 118 0 0 chr6 14436640 14436776 -174842778 - AluSq SINE Alu -175 138 3 188 360 73 20 chr6 14436952 14437102 -174842452 - MIR SINE MIR -28 234 77 263 159 0 0 chr6 14437336 14437380 -174842174 - AluS SINE Alu -28 274 231 755 216 45 54 chr6 14437380 14437602 -174841952 + pTR5 LTR ERV1 745 964 -1474 2383 191 91 117 chr6 14437793 14438638 -174840916 + LTR12 LTR ERV1 3 825 -1 885 223 48 0 chr6 14438667 14438855 -174840699 - AluSx SINE Alu -107 205 9 1513 209 71 9 chr6 14439701 14440040 -174839514 - MLT1A2 LTR MaLR 0 374 15 254 277 15 0 chr6 14440040 14440105 -174839449 + MIR SINE MIR 171 236 -26 438 312 0 7 chr6 14440269 14440407 -174839147 - MIR SINE MIR -111 151 15 665 188 199 0 chr6 14440579 14440760 -174838794 - MER20 DNA MER1_type 0 219 3 218 370 51 61 chr6 14441637 14441932 -174837622 - L2 LINE L2 -2 3270 2979 22 35 0 0 chr6 14442638 14442667 -174836887 + AT_rich Low_complexity Low_complexity 1 29 0 2276 113 10 0 chr6 14442864 14443174 -174836380 - AluSp SINE Alu 0 313 1 1841 136 24 3 chr6 14443219 14443506 -174836048 + AluJo SINE Alu 5 297 -15 2380 85 0 0 chr6 14443509 14443803 -174835751 + AluY SINE Alu 1 294 -17 1608 239 42 52 chr6 14443893 14444508 -174835046 + L1MC5 LINE L1 6646 7252 -728 1186 246 58 81 chr6 14444642 14444860 -174834694 + L1MC5 LINE L1 7290 7511 -450 1859 168 58 34 chr6 14444860 14445241 -174834313 - MLT1B LTR MaLR 0 390 1 1186 246 58 81 chr6 14445241 14445337 -174834217 + L1MC5 LINE L1 7511 7608 -353 1610 197 3 16 chr6 14445337 14445642 -174833912 - AluJo SINE Alu -11 301 1 1186 246 58 81 chr6 14445642 14445896 -174833658 + L1MC5 LINE L1 7608 7846 -115 1836 127 0 72 chr6 14445896 14446042 -174833512 + AluJb SINE Alu 1 156 -161 2943 12 0 3 chr6 14446042 14446361 -174833193 + AluYb8 SINE Alu 1 318 0 1836 127 0 72 chr6 14446361 14446553 -174833001 + AluJb SINE Alu 156 317 0 347 195 0 35 chr6 14447471 14447558 -174831996 + L1MC5 LINE L1 7842 7925 -36 420 285 66 48 chr6 14447594 14447863 -174831691 + L1MC5 LINE L1 7514 7793 -168 360 0 0 0 chr6 14447863 14447903 -174831651 + (CA)n Simple_repeat Simple_repeat 2 41 0 420 285 66 48 chr6 14447903 14448012 -174831542 + L1MC5 LINE L1 7793 7899 -62 2304 100 0 28 chr6 14448415 14448735 -174830819 + AluSq SINE Alu 1 311 -2 274 0 73 0 chr6 14448735 14448776 -174830778 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 32 26 0 0 chr6 14448889 14448928 -174830626 + AT_rich Low_complexity Low_complexity 1 39 0 1766 208 46 11 chr6 14450213 14450579 -174828975 + MER57A LTR ERV1 11 389 -14 1322 94 0 0 chr6 14450579 14450749 -174828805 - AluSg/x SINE Alu -10 302 133 690 141 0 0 chr6 14450749 14450848 -174828706 + AluSq/x SINE Alu 9 107 -205 1941 129 57 0 chr6 14451258 14451537 -174828017 + AluSx SINE Alu 1 295 -17 290 301 44 15 chr6 14451568 14451704 -174827850 - MIR SINE MIR -72 190 51 688 230 16 27 chr6 14451748 14451935 -174827619 - MIR SINE MIR 0 262 78 642 207 68 81 chr6 14452191 14452637 -174826917 - LTR33 LTR ERVL -1 520 32 2211 91 35 0 chr6 14452765 14453050 -174826504 + AluSp SINE Alu 1 295 -18 1115 200 5 9 chr6 14453195 14453433 -174826121 + L1MA9 LINE L1 5555 5791 -500 254 247 0 22 chr6 14453451 14453540 -174826014 - L1MC4 LINE L1 -1339 6703 6617 * 274 253 0 40 chr6 14453479 14453578 -174825976 + L1MC4 LINE L1 6614 6708 -1334 * 2302 168 71 14 chr6 14453553 14454047 -174825507 + L1MA9 LINE L1 5783 6304 -8 253 228 79 71 chr6 14455096 14455223 -174824331 + L2 LINE L2 2379 2506 -808 2345 99 0 0 chr6 14455256 14455550 -174824004 + AluSx SINE Alu 1 294 -18 204 294 28 63 chr6 14455550 14455602 -174823952 - L2 LINE L2 -20 3293 3241 2339 97 0 3 chr6 14455602 14455900 -174823654 + AluSx SINE Alu 1 297 -15 204 294 28 63 chr6 14455900 14455990 -174823564 - L2 LINE L2 -72 3241 3156 599 303 139 9 chr6 14456160 14456490 -174823064 - MLT1L LTR MaLR -234 381 9 180 339 22 84 chr6 14456553 14456780 -174822774 + L2 LINE L2 2575 2787 -527 317 328 35 35 chr6 14456793 14456941 -174822613 - MIR SINE MIR -17 245 95 1997 161 92 65 chr6 14456941 14457008 -174822546 - MLT1D LTR MaLR 0 505 441 2111 124 3 0 chr6 14457008 14457321 -174822233 - AluSx SINE Alu 0 314 1 1997 161 92 65 chr6 14457321 14457743 -174821811 - MLT1D LTR MaLR -64 441 2 317 328 35 35 chr6 14457743 14457792 -174821762 - MIR SINE MIR -166 96 48 277 208 32 104 chr6 14457860 14457985 -174821569 + L2 LINE L2 2944 3059 -213 468 86 0 0 chr6 14458131 14458201 -174821353 + (TTGG)n Simple_repeat Simple_repeat 1 70 0 233 214 0 0 chr6 14458643 14458685 -174820869 + (CA)n Simple_repeat Simple_repeat 2 43 0 288 303 37 9 chr6 14458685 14458794 -174820760 - MIR SINE MIR -138 124 13 801 204 76 19 chr6 14458871 14459082 -174820472 - L1PA16 LINE L1 -4 6162 5940 2058 104 43 0 chr6 14459365 14459644 -174819910 + AluSq SINE Alu 1 291 -22 324 159 32 159 chr6 14460811 14460937 -174818617 + MER5B DNA MER1_type 50 159 -19 187 256 0 0 chr6 14461047 14461086 -174818468 - MER5B DNA MER1_type -76 102 64 1782 150 0 4 chr6 14461097 14461364 -174818190 - AluJb SINE Alu 0 312 47 252 205 64 39 chr6 14461950 14462028 -174817526 - MIR SINE MIR -93 115 36 417 237 122 35 chr6 14462075 14462324 -174817230 - MER46C DNA MER2_type -1 337 1 546 304 54 22 chr6 14462347 14462531 -174817023 - MIR SINE MIR -1 261 72 197 235 39 0 chr6 14463884 14463935 -174815619 + MIR SINE MIR 60 112 -96 358 351 18 0 chr6 14463939 14464050 -174815504 - L2 LINE L2 0 3272 3160 1049 176 5 5 chr6 14464059 14464247 -174815307 - MER5A DNA MER1_type -1 188 1 4224 191 41 22 chr6 14464505 14465428 -174814126 + L1MB8 LINE L1 4756 5703 -475 2308 96 3 0 chr6 14465428 14465720 -174813834 + AluSq SINE Alu 1 293 -20 4224 191 41 22 chr6 14465720 14466206 -174813348 + L1MB8 LINE L1 5703 6178 0 197 0 0 0 chr6 14466469 14466493 -174813061 + MER5A DNA MER1_type 1 24 -165 1320 176 52 0 chr6 14466494 14466727 -174812827 + L1MA9 LINE L1 5545 5789 -502 4492 160 36 31 chr6 14466737 14468095 -174811459 + pTR5 LTR ERV1 741 2430 -8 1820 188 51 44 chr6 14468105 14468352 -174811202 + L1MA9 LINE L1 5798 6051 -261 1853 174 0 0 chr6 14468352 14468645 -174810909 + AluSx SINE Alu 1 293 -19 1820 188 51 44 chr6 14468645 14468871 -174810683 + L1MA9 LINE L1 6051 6274 -38 28 29 0 0 chr6 14468871 14468906 -174810648 + AT_rich Low_complexity Low_complexity 1 35 0 901 164 42 0 chr6 14468911 14469076 -174810478 + MER5A DNA MER1_type 17 188 -1 444 333 35 22 chr6 14469181 14469409 -174810145 - L2 LINE L2 -575 2739 2509 1701 154 70 9 chr6 14469444 14469774 -174809780 - L1MB4 LINE L1 -1 6179 5830 2525 132 8 5 chr6 14469775 14470433 -174809121 + MER50 LTR ERV1 1 711 -23 295 148 0 19 chr6 14470439 14470493 -174809061 - L1MB4 LINE L1 -346 5828 5776 225 132 75 0 chr6 14470493 14470546 -174809008 + (TA)n Simple_repeat Simple_repeat 2 58 0 2570 178 39 29 chr6 14470550 14471187 -174808367 - L1MB4 LINE L1 -376 5804 5173 218 317 12 0 chr6 14471223 14471305 -174808249 - L2 LINE L2 -4 3309 3227 324 312 0 0 chr6 14471580 14471657 -174807897 - MER69 DNA AcHobo -2449 77 1 3545 103 9 59 chr6 14471887 14472531 -174807023 + MER4B LTR ERV1 1 779 0 1122 175 63 114 chr6 14472800 14472917 -174806637 + MER69 DNA AcHobo 2150 2271 -255 1067 93 0 182 chr6 14472917 14473153 -174806401 + 7SK RNA RNA 1 193 0 1122 175 63 114 chr6 14473153 14473303 -174806251 + MER69 DNA AcHobo 2271 2393 -133 2576 68 0 0 chr6 14473303 14473612 -174805942 - AluY SINE Alu -2 309 1 1122 175 63 114 chr6 14473612 14473738 -174805816 + MER69 DNA AcHobo 2393 2524 -2 648 233 0 0 chr6 14474082 14474211 -174805343 + FLAM_A SINE Alu 10 138 -4 2158 108 69 83 chr6 14474211 14474644 -174804910 + MSTA LTR MaLR 2 428 0 2259 107 0 10 chr6 14475250 14475558 -174803996 - AluSg SINE Alu -5 305 1 440 253 11 81 chr6 14475811 14475997 -174803557 + MER5B DNA MER1_type 3 175 -3 1430 243 60 72 chr6 14476025 14476724 -174802830 - HAL1 LINE L1 -748 1759 1069 1537 264 85 51 chr6 14476727 14477632 -174801922 + L1MC4a LINE L1 4582 5454 -692 782 55 0 18 chr6 14477632 14477741 -174801813 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1496 104 5 14 chr6 14477743 14477955 -174801599 - AluSg/x SINE Alu -23 287 78 1537 264 85 51 chr6 14477955 14478371 -174801183 + L1MC4a LINE L1 5454 5362 -784 1697 168 30 40 chr6 14478371 14478674 -174800880 + AluSx SINE Alu 1 300 -12 1537 264 85 51 chr6 14478674 14478719 -174800835 + L1MC4a LINE L1 5361 5403 -743 362 304 182 12 chr6 14478840 14479093 -174800461 - MLT1J LTR MaLR -1 510 215 401 268 64 75 chr6 14479199 14479479 -174800075 - HAL1 LINE L1 -1613 894 618 249 189 0 0 chr6 14479624 14479661 -174799893 + MER20 DNA MER1_type 1 37 -182 485 146 212 66 chr6 14479664 14479815 -174799739 - MER53 DNA DNA -1 188 16 * 1026 204 32 0 chr6 14479810 14479996 -174799558 + MER20 DNA MER1_type 25 216 -3 2542 53 0 13 chr6 14481538 14481838 -174797716 + AluSc SINE Alu 1 296 -13 1393 148 27 46 chr6 14481923 14482186 -174797368 - AluJo SINE Alu -25 287 30 206 286 188 9 chr6 14482192 14482304 -174797250 - MIR SINE MIR -71 191 60 467 230 50 93 chr6 14482306 14482584 -174796970 - L1ME4a LINE L1 -229 5892 5627 658 272 17 35 chr6 14483240 14483413 -174796141 - L3b LINE CR1 -157 1426 1257 181 273 0 0 chr6 14483420 14483464 -174796090 + L2 LINE L2 3265 3308 -5 183 317 99 49 chr6 14483468 14483540 -174796014 - L3b LINE CR1 -324 1259 1192 1999 120 57 0 chr6 14483540 14483823 -174795731 - AluSx SINE Alu -13 299 1 183 317 99 49 chr6 14483823 14483892 -174795662 - L3b LINE CR1 -391 1192 1111 186 316 35 0 chr6 14485079 14485136 -174794418 - MIR SINE MIR -24 238 180 2363 181 45 11 chr6 14485149 14485612 -174793942 + LTR45B LTR ERV1 3 481 -8 479 296 0 52 chr6 14485616 14485751 -174793803 - MIR SINE MIR -104 158 31 754 64 0 37 chr6 14535754 14535863 -174743691 - AluY SINE Alu -163 148 44 2024 146 7 3 chr6 14536042 14536351 -174743203 + AluSg SINE Alu 1 310 0 361 338 6 6 chr6 14536958 14537115 -174742439 + L1MEd LINE L1 596 752 -5367 2030 222 33 22 chr6 14537144 14537266 -174742288 + L1ME2 LINE L1 4569 4688 -1458 2429 88 3 0 chr6 14537266 14537572 -174741982 - AluSp SINE Alu -6 307 1 2030 222 33 22 chr6 14537572 14538049 -174741505 + L1ME2 LINE L1 4688 5175 -971 2464 215 44 72 chr6 14538076 14538686 -174740868 + L1ME2 LINE L1 5254 5834 -330 2197 113 0 0 chr6 14538686 14538994 -174740560 - AluSx SINE Alu 0 308 1 2464 215 44 72 chr6 14538994 14539274 -174740280 + L1ME2 LINE L1 5834 6120 -44 27 0 0 0 chr6 14539354 14539381 -174740173 + AT_rich Low_complexity Low_complexity 1 27 0 368 288 75 7 chr6 14539435 14539581 -174739973 + MIR3 SINE MIR 3 158 -50 2042 105 51 3 chr6 14539725 14540020 -174739534 + AluSx SINE Alu 1 309 -3 2351 79 0 3 chr6 14540286 14540589 -174738965 - AluSx SINE Alu -10 302 1 210 206 0 0 chr6 14540602 14540665 -174738889 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 486 290 37 25 chr6 14540695 14540857 -174738697 - MIR3 SINE MIR -28 180 17 912 182 13 0 chr6 14540956 14541115 -174738439 - AluJb SINE Alu -18 294 134 2053 118 38 0 chr6 14541115 14541402 -174738152 - AluSx SINE Alu -14 298 1 3423 169 107 39 chr6 14542172 14543474 -174736080 - pTR5 LTR ERV1 0 2438 743 1758 104 0 90 chr6 14543474 14543763 -174735791 + AluSq SINE Alu 31 293 -20 270 256 64 64 chr6 14543892 14544017 -174735537 + MIR SINE MIR 6 130 -132 1824 140 7 7 chr6 14544142 14544413 -174735141 + AluSx SINE Alu 13 283 -29 2496 166 31 9 chr6 14544621 14545074 -174734480 + MLT1C LTR MaLR 1 463 -4 1154 150 6 0 chr6 14545155 14545328 -174734226 - AluSg/x SINE Alu -8 302 129 27 0 0 0 chr6 14545361 14545388 -174734166 + AT_rich Low_complexity Low_complexity 1 27 0 1033 69 0 0 chr6 14545388 14545519 -174734035 - AluSc SINE Alu -178 131 1 1645 151 12 47 chr6 14545791 14546110 -174733444 - AluJo SINE Alu 0 312 5 1515 110 5 41 chr6 14546120 14546338 -174733216 - AluSq SINE Alu -10 303 94 3408 205 36 10 chr6 14546613 14547165 -174732389 + L1MC3 LINE L1 6897 7480 -305 2224 123 0 0 chr6 14547165 14547465 -174732089 + AluSq SINE Alu 1 300 -13 3408 205 36 10 chr6 14547465 14547779 -174731775 + L1MC3 LINE L1 7480 7785 0 24 0 0 0 chr6 14548061 14548085 -174731469 + AT_rich Low_complexity Low_complexity 1 24 0 2216 113 13 3 chr6 14548241 14548543 -174731011 + AluSx SINE Alu 1 305 -7 3085 241 108 91 chr6 14549737 14550989 -174728565 + HAL1 LINE L1 376 1605 -902 270 150 0 0 chr6 14550989 14551029 -174728525 - 5S rRNA rRNA -81 40 1 3085 241 108 91 chr6 14551029 14551565 -174727989 + HAL1 LINE L1 1605 2246 -261 288 0 0 0 chr6 14551565 14551597 -174727957 + (TG)n Simple_repeat Simple_repeat 2 33 0 3085 241 108 91 chr6 14551597 14551864 -174727690 + HAL1 LINE L1 2246 2507 0 181 303 40 10 chr6 14551960 14552059 -174727495 - L2 LINE L2 -2520 794 693 206 259 52 0 chr6 14552722 14552780 -174726774 + MIR3 SINE MIR 137 197 -11 254 217 36 36 chr6 14553280 14553363 -174726191 + MER103 DNA DNA 3 85 -81 2347 141 25 30 chr6 14553718 14554152 -174725402 - MSTB1 LTR MaLR 0 432 1 2242 117 0 0 chr6 14554453 14554760 -174724794 + AluSc SINE Alu 1 307 -2 438 291 114 76 chr6 14556258 14556742 -174722812 + L1MC4 LINE L1 7192 7693 -349 263 209 67 57 chr6 14556901 14557006 -174722548 + L1MC4 LINE L1 7920 8025 -17 185 311 63 49 chr6 14557067 14557275 -174722279 + L2 LINE L2 1979 2194 -1120 4360 99 48 24 chr6 14557275 14558021 -174721533 + L1MA5A LINE L1 5530 6293 -4 185 311 63 49 chr6 14558021 14558098 -174721456 + L2 LINE L2 2194 2268 -1046 397 0 38 0 chr6 14559539 14559592 -174719962 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 407 141 43 11 chr6 14565834 14565926 -174713628 + L1ME3A LINE L1 5860 5954 -216 2028 116 41 41 chr6 14566003 14566365 -174713189 - THE1B LTR MaLR -2 362 1 10995 81 23 62 chr6 14566365 14567472 -174712082 - THE1B-int LTR MaLR 0 1580 556 2239 92 7 23 chr6 14567472 14567775 -174711779 - AluY SINE Alu -13 298 1 10995 81 23 62 chr6 14567775 14568311 -174711243 - THE1B-int LTR MaLR -1024 556 1 1900 139 50 36 chr6 14568311 14568670 -174710884 - THE1B LTR MaLR 0 364 1 227 87 65 43 chr6 14568846 14568892 -174710662 + GA-rich Low_complexity Low_complexity 3 49 0 2399 152 73 9 chr6 14569082 14569767 -174709787 + L1MA4A LINE L1 5532 6279 -12 367 261 94 112 chr6 14570211 14570659 -174708895 + MLT1K LTR MaLR 2 438 -150 261 0 0 0 chr6 14570659 14570688 -174708866 + (CAA)n Simple_repeat Simple_repeat 2 30 0 367 261 94 112 chr6 14570688 14570837 -174708717 + MLT1K LTR MaLR 438 588 0 22 0 0 0 chr6 14570907 14570929 -174708625 + AT_rich Low_complexity Low_complexity 1 22 0 235 306 0 0 chr6 14570971 14571033 -174708521 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1030 298 143 48 chr6 14571152 14571934 -174707620 - L1M4 LINE L1 -2408 3738 3032 592 146 89 57 chr6 14571934 14572057 -174707497 + FLAM_C SINE Alu 1 127 -6 1030 298 143 48 chr6 14572057 14572655 -174706899 - L1M4 LINE L1 -3114 3032 2226 1742 144 0 8 chr6 14572666 14572929 -174706625 + AluJb SINE Alu 12 272 -40 288 77 0 0 chr6 14572940 14572979 -174706575 + (CA)n Simple_repeat Simple_repeat 2 40 0 1922 156 0 0 chr6 14573031 14573313 -174706241 - AluSx SINE Alu -30 282 1 2169 178 52 11 chr6 14573671 14574114 -174705440 + LOR1b LTR ERV1 1 461 0 382 270 104 56 chr6 14574140 14574514 -174705040 - HAL1 LINE L1 -975 1532 1141 21 36 0 0 chr6 14575696 14575724 -174703830 + AT_rich Low_complexity Low_complexity 1 28 0 1030 232 109 71 chr6 14575890 14576411 -174703143 + MLT1H LTR MaLR 1 541 -8 207 255 91 14 chr6 14578339 14578435 -174701119 + MIR SINE MIR 37 190 -72 342 67 0 0 chr6 14579092 14579137 -174700417 + (CA)n Simple_repeat Simple_repeat 1 45 0 839 173 0 0 chr6 14579301 14579434 -174700120 - FLAM_C SINE Alu 0 133 1 331 323 42 0 chr6 14579497 14579593 -174699961 - L2 LINE L2 0 3272 3173 1651 335 111 21 chr6 14579607 14580552 -174699002 + L2 LINE L2 1912 2941 -373 1589 164 40 20 chr6 14580596 14580971 -174698583 - MSTB1 LTR MaLR 0 432 1 248 361 114 11 chr6 14580974 14581237 -174698317 + L2 LINE L2 3020 3309 -4 1971 86 0 0 chr6 14581387 14581650 -174697904 - AluSc SINE Alu 0 301 39 265 200 0 0 chr6 14582707 14582752 -174696802 - MER41B LTR ERV1 -590 45 1 2184 131 0 3 chr6 14583169 14583481 -174696073 + AluSx SINE Alu 1 311 -1 1294 120 25 10 chr6 14583569 14583806 -174695748 + L1MA5 LINE L1 5717 5956 -335 819 142 0 17 chr6 14583905 14584025 -174695529 - FLAM_C SINE Alu -25 118 1 399 218 35 105 chr6 14584244 14584473 -174695081 + L1MC5 LINE L1 6926 7138 -823 585 253 160 10 chr6 14584522 14584716 -174694838 + MER58A DNA MER1_type 1 223 -1 1654 222 52 46 chr6 14584913 14585115 -174694439 + L1MC5 LINE L1 7292 7491 -470 1083 163 17 54 chr6 14585115 14585354 -174694200 + MER30 DNA MER1_type 1 230 0 1654 222 52 46 chr6 14585354 14585781 -174693773 + L1MC5 LINE L1 7491 7925 -36 249 308 234 9 chr6 14585876 14585983 -174693571 - L2 LINE L2 0 3272 3142 2058 197 13 111 chr6 14586526 14587140 -174692414 + MER41C LTR ERV1 1 554 0 5093 165 13 32 chr6 14587147 14588196 -174691358 + MER41C-int LTR ERV1 7 1126 -4820 3421 151 26 16 chr6 14588188 14588697 -174690857 + MER41C-int LTR ERV1 2349 2851 -3095 * 2146 136 0 0 chr6 14588697 14588991 -174690563 + AluSx SINE Alu 1 294 -18 2072 139 10 0 chr6 14589000 14589295 -174690259 + AluSx SINE Alu 4 301 -11 3421 151 26 16 chr6 14589295 14589994 -174689560 + MER41C-int LTR ERV1 2858 3645 -2301 12144 123 36 47 chr6 14590708 14593071 -174686483 + MER41C-int LTR ERV1 3609 5945 -1 2524 170 27 83 chr6 14593072 14593329 -174686225 + MER41C LTR ERV1 1 271 -283 2021 138 7 0 chr6 14593329 14593653 -174685901 + AluSx SINE Alu 1 326 0 2524 170 27 83 chr6 14593653 14593981 -174685573 + MER41C LTR ERV1 271 554 0 406 297 41 28 chr6 14594534 14594679 -174684875 + MIR3 SINE MIR 61 207 -1 531 331 39 11 chr6 14594943 14595121 -174684433 + MIR SINE MIR 32 214 -48 550 92 0 0 chr6 14595252 14595340 -174684214 + MER31B LTR ERV1 1 75 -391 * 1404 203 90 35 chr6 14595336 14595808 -174683746 + MER67B LTR ERV1 5 406 -255 292 225 0 34 chr6 14595808 14595897 -174683657 + MER67C LTR ERV1 318 403 -307 259 229 36 0 chr6 14595990 14596076 -174683478 + MER31B LTR ERV1 385 527 -16 328 399 69 17 chr6 14596090 14596263 -174683291 - L2 LINE L2 -2 3270 3089 844 181 0 0 chr6 14596373 14596511 -174683043 + FLAM_C SINE Alu 1 138 -5 22 35 0 0 chr6 14596584 14596613 -174682941 + AT_rich Low_complexity Low_complexity 1 29 0 400 191 11 11 chr6 14596803 14596897 -174682657 + L1MB8 LINE L1 6075 6168 -10 724 281 107 35 chr6 14596933 14597152 -174682402 + L1MEc LINE L1 1103 1305 -5091 1816 186 0 0 chr6 14597152 14597442 -174682112 + AluSx SINE Alu 1 290 -22 724 281 107 35 chr6 14597442 14597885 -174681669 + L1MEc LINE L1 1305 1813 -4583 1517 272 91 19 chr6 14598047 14599337 -174680217 + L1MEc LINE L1 2032 3376 -2839 3414 245 67 38 chr6 14599353 14599953 -174679601 + L1MEc LINE L1 3771 4352 -1887 2427 87 0 0 chr6 14599953 14600262 -174679292 + AluY SINE Alu 3 311 0 3414 245 67 38 chr6 14600262 14600691 -174678863 + L1MEc LINE L1 4352 4767 -1472 2116 105 0 0 chr6 14600691 14600968 -174678586 - AluSq SINE Alu -11 302 26 3414 245 67 38 chr6 14600968 14601477 -174678077 + L1MEc LINE L1 4767 5260 -979 2072 74 32 58 chr6 14601477 14601789 -174677765 + AluY SINE Alu 1 304 -7 3414 245 67 38 chr6 14601789 14602630 -174676924 + L1MEc LINE L1 5260 6233 -6 270 309 64 77 chr6 14602708 14603222 -174676332 + L2 LINE L2 2665 3225 -47 2393 118 83 8 chr6 14603540 14603938 -174675616 + MSTA LTR MaLR 1 428 0 272 282 0 0 chr6 14604480 14604558 -174674996 - L2 LINE L2 -78 3235 3158 682 277 84 64 chr6 14604582 14604966 -174674588 + L2 LINE L2 2594 3033 -280 224 391 0 0 chr6 14605063 14605150 -174674404 - L2 LINE L2 -2001 1313 1227 881 211 5 0 chr6 14605562 14605745 -174673809 + Charlie5 DNA MER1_type 1 187 -2437 2204 128 0 6 chr6 14605745 14606058 -174673496 - AluSx SINE Alu -1 311 1 731 198 5 5 chr6 14606067 14606253 -174673301 + Charlie5 DNA MER1_type 2348 2536 -88 * 1417 156 93 42 chr6 14606253 14606542 -174673012 - AluJo SINE Alu -8 304 1 731 198 5 5 chr6 14606542 14606557 -174672997 + Charlie5 DNA MER1_type 2535 2549 -75 743 243 22 33 chr6 14607566 14607648 -174671906 - MIR SINE MIR -49 213 132 2236 164 0 3 chr6 14607648 14608014 -174671540 - MLT1A1 LTR MaLR 0 365 1 743 243 22 33 chr6 14608014 14608112 -174671442 - MIR SINE MIR -130 132 35 288 344 0 0 chr6 14608978 14609071 -174670483 + MIR SINE MIR 168 260 -2 1208 144 5 5 chr6 14609432 14609633 -174669921 + MER2 DNA MER2_type 2 202 -143 648 177 31 8 chr6 14610099 14610229 -174669325 + MIR SINE MIR 120 252 -10 192 40 0 0 chr6 14613001 14613026 -174666528 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr6 14614602 14614633 -174664921 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 14614720 14614741 -174664813 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr6 14614846 14614888 -174664666 + GC_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr6 14614900 14614949 -174664605 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr6 14615065 14615086 -174664468 + GC_rich Low_complexity Low_complexity 1 21 0 201 174 0 22 chr6 14615301 14615347 -174664207 + (CCA)n Simple_repeat Simple_repeat 3 47 0 189 107 0 0 chr6 14615501 14615529 -174664025 + (TCC)n Simple_repeat Simple_repeat 2 29 0 686 238 50 5 chr6 14616341 14616597 -174662957 + L1P5 LINE L1 5575 5842 -309 946 163 153 28 chr6 14617367 14617655 -174661899 + MER33 DNA MER1_type 1 324 0 696 273 43 0 chr6 14617865 14618026 -174661528 + MIR SINE MIR 23 190 -72 2484 74 0 0 chr6 14618099 14618395 -174661159 - AluY SINE Alu -15 296 1 23 54 0 0 chr6 14618641 14618678 -174660876 + AT_rich Low_complexity Low_complexity 1 37 0 227 200 0 0 chr6 14618885 14618920 -174660634 - MIR SINE MIR -110 98 64 184 167 0 0 chr6 14620676 14620706 -174658848 + MIR SINE MIR 123 152 -56 570 119 0 28 chr6 14621220 14621329 -174658225 - MER53 DNA DNA -83 106 1 488 335 36 33 chr6 14621723 14621998 -174657556 - L2 LINE L2 -599 2715 2440 206 132 0 26 chr6 14622168 14622181 -174657373 + (GA)n Simple_repeat Simple_repeat 2 14 -24 2032 106 0 0 chr6 14622181 14622445 -174657109 + AluSq SINE Alu 41 304 -9 206 132 0 26 chr6 14622445 14622469 -174657085 + (GA)n Simple_repeat Simple_repeat 14 38 0 823 293 60 48 chr6 14622511 14622924 -174656630 + L2 LINE L2 2887 3304 -9 197 329 71 41 chr6 14623522 14623692 -174655862 - L2 LINE L2 -294 2978 2804 200 335 107 39 chr6 14624368 14624601 -174654953 + L2 LINE L2 2510 2758 -556 231 357 0 18 chr6 14624721 14624833 -174654721 + L2 LINE L2 2946 3055 -217 766 271 124 38 chr6 14625724 14626177 -174653377 - MLT1L LTR MaLR -2 613 122 270 0 0 0 chr6 14626193 14626223 -174653331 + (A)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr6 14626417 14626439 -174653115 + (CAT)n Simple_repeat Simple_repeat 2 23 0 2292 103 3 0 chr6 14627280 14627582 -174651972 + AluSx SINE Alu 1 303 -9 211 209 66 77 chr6 14628188 14628279 -174651275 + MIR3 SINE MIR 118 207 -1 * 760 260 44 52 chr6 14628262 14628512 -174651042 + MIR SINE MIR 2 249 -13 4014 152 54 16 chr6 14628535 14629348 -174650206 - L1MB8 LINE L1 0 6178 5337 2133 81 17 3 chr6 14629478 14629773 -174649781 - L1PA10 LINE L1 -2 6166 5868 363 346 86 0 chr6 14630158 14630320 -174649234 + MIR SINE MIR 76 251 -11 866 115 0 7 chr6 14631899 14632047 -174647507 + (GGAA)n Simple_repeat Simple_repeat 4 150 0 265 296 49 0 chr6 14632314 14632395 -174647159 + L2 LINE L2 3225 3309 -4 411 266 117 56 chr6 14633008 14633358 -174646196 + L1MC4a LINE L1 5669 6038 -83 2257 104 3 0 chr6 14633361 14633659 -174645895 - AluSx SINE Alu -13 299 1 40 49 0 0 chr6 14633730 14633791 -174645763 + AT_rich Low_complexity Low_complexity 1 61 0 309 333 217 19 chr6 14633816 14634125 -174645429 + L1MC4a LINE L1 5544 5913 -1895 375 308 88 39 chr6 14634174 14634356 -174645198 + L1MC4a LINE L1 5765 5955 -1853 188 299 39 52 chr6 14635131 14635164 -174644390 - MIR3 SINE MIR -127 81 49 1094 162 133 41 chr6 14635164 14635437 -174644117 + AluJb SINE Alu 1 296 -6 188 299 39 52 chr6 14635437 14635478 -174644076 - MIR3 SINE MIR -159 49 6 356 287 16 39 chr6 14635491 14635620 -174643934 - MIR3 SINE MIR -68 140 15 369 217 22 22 chr6 14636007 14636099 -174643455 - MLT1I LTR MaLR -9 400 309 358 169 14 14 chr6 14636220 14636291 -174643263 - MLT1J2 LTR MaLR -306 144 74 240 35 0 0 chr6 14636549 14636578 -174642976 + (CA)n Simple_repeat Simple_repeat 2 30 0 1856 161 13 3 chr6 14637122 14637427 -174642127 - AluJb SINE Alu 0 312 5 2542 54 0 3 chr6 14637442 14637738 -174641816 - AluY SINE Alu -16 295 1 231 114 0 0 chr6 14637817 14637852 -174641702 + (TTC)n Simple_repeat Simple_repeat 1 35 0 2722 42 0 0 chr6 14638652 14638962 -174640592 + AluY SINE Alu 1 310 -1 663 258 38 113 chr6 14638980 14639271 -174640283 + MLT1L LTR MaLR 236 608 -7 2084 115 26 26 chr6 14639393 14639705 -174639849 + AluSx SINE Alu 1 312 0 877 148 7 14 chr6 14639804 14639946 -174639608 - FLAM_C SINE Alu -2 141 1 2325 101 0 0 chr6 14640274 14640580 -174638974 + AluSx SINE Alu 1 306 -6 697 283 52 35 chr6 14641201 14641601 -174637953 - L1ME4a LINE L1 -9 6112 5706 273 154 103 39 chr6 14642238 14642316 -174637238 + MLT1L LTR MaLR 529 611 -4 715 293 19 0 chr6 14642513 14642718 -174636836 + MIR SINE MIR 52 260 -2 268 319 38 11 chr6 14642732 14642917 -174636637 + L3 LINE CR1 1189 1378 -199 1541 98 13 17 chr6 14642932 14642961 -174636593 + L1MA5A LINE L1 6058 6086 -211 2592 88 59 0 chr6 14642961 14643315 -174636239 + THE1C LTR MaLR 1 375 0 1541 98 13 17 chr6 14643315 14643521 -174636033 + L1MA5A LINE L1 6086 6292 -5 24 53 0 0 chr6 14643521 14643559 -174635995 + AT_rich Low_complexity Low_complexity 1 38 0 1523 161 57 143 chr6 14643917 14644315 -174635239 + MLT1C LTR MaLR 48 402 -65 1868 147 25 0 chr6 14644315 14644594 -174634960 - AluSx SINE Alu -26 286 1 1523 161 57 143 chr6 14644594 14644655 -174634899 + MLT1C LTR MaLR 402 467 0 1687 157 66 11 chr6 14644678 14644952 -174634602 - AluJb SINE Alu -23 289 1 222 255 21 43 chr6 14645083 14645177 -174634377 + L2 LINE L2 2219 2310 -1004 566 286 80 10 chr6 14645385 14645696 -174633858 + L1ME3A LINE L1 4395 4727 -1419 1624 172 29 16 chr6 14645845 14646153 -174633401 - MLT1B LTR MaLR 0 390 79 493 258 52 0 chr6 14646273 14646428 -174633126 + L1ME3A LINE L1 5727 5889 -281 2147 128 0 3 chr6 14646502 14646807 -174632747 + AluSx SINE Alu 1 304 -8 264 185 46 40 chr6 14646849 14647022 -174632532 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 * 311 241 49 0 chr6 14646911 14647073 -174632481 + (TA)n Simple_repeat Simple_repeat 2 171 0 38 0 0 0 chr6 14647321 14647359 -174632195 + AT_rich Low_complexity Low_complexity 1 38 0 1437 216 30 24 chr6 14647818 14648156 -174631398 + MER58B DNA MER1_type 1 340 -1 438 246 80 85 chr6 14649345 14649569 -174629985 - LTR16A LTR ERVL -12 438 216 915 96 86 91 chr6 14649569 14649756 -174629798 + MLT1B LTR MaLR 1 186 -204 593 133 0 11 chr6 14649781 14649871 -174629683 - THE1B LTR MaLR 0 364 276 2278 93 14 0 chr6 14649871 14650161 -174629393 + AluSx SINE Alu 1 294 -18 255 297 0 0 chr6 14650167 14650258 -174629296 - L1MC4 LINE L1 -1339 6703 6613 1593 121 71 36 chr6 14650275 14650556 -174628998 - THE1B LTR MaLR -73 291 1 1103 182 10 0 chr6 14650563 14650761 -174628793 + MLT1B LTR MaLR 191 390 0 273 265 249 20 chr6 14651019 14651222 -174628332 - L2 LINE L2 -181 3091 2936 2109 119 3 3 chr6 14651222 14651517 -174628037 + AluSx SINE Alu 1 295 -17 273 265 249 20 chr6 14651517 14651648 -174627906 - L2 LINE L2 -336 2936 2684 233 233 63 74 chr6 14652110 14652221 -174627333 + MIR SINE MIR 19 134 -93 186 43 0 0 chr6 14652222 14652245 -174627309 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1615 142 104 21 chr6 14652249 14652537 -174627017 - AluJo SINE Alu 0 312 1 257 289 67 0 chr6 14652538 14652642 -174626912 + MIR SINE MIR 97 207 -55 590 269 157 49 chr6 14652659 14652876 -174626678 - L2 LINE L2 0 3313 3121 1932 111 56 0 chr6 14652876 14653146 -174626408 + AluSx SINE Alu 19 303 -9 590 269 157 49 chr6 14653146 14653278 -174626276 - L2 LINE L2 -192 3121 2926 225 255 142 28 chr6 14653453 14653559 -174625995 - MER5B DNA MER1_type -60 118 1 1497 142 3 133 chr6 14653601 14653931 -174625623 + AluJo SINE Alu 1 287 -15 2050 124 28 0 chr6 14654419 14654702 -174624852 + AluSx SINE Alu 1 291 -21 209 238 12 0 chr6 14655342 14655422 -174624132 + (CA)n Simple_repeat Simple_repeat 1 81 0 286 213 8 148 chr6 14655979 14656101 -174623453 - L2 LINE L2 -92 3221 3117 204 149 0 21 chr6 14656148 14656195 -174623359 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 2431 104 0 6 chr6 14656197 14656525 -174623029 - LTR17 LTR ERV1 -454 326 1 2373 52 3 3 chr6 14656529 14656816 -174622738 - HERV17 LTR ERV1 -5 8621 8335 306 51 0 0 chr6 14656806 14656845 -174622709 - HERV17 LTR ERV1 -1078 7548 7510 * 10981 54 5 8 chr6 14656838 14658768 -174620786 - HERV17 LTR ERV1 -2607 6019 2430 * 14444 75 24 30 chr6 14658760 14659073 -174620481 - HERV17 LTR ERV1 -6619 2007 1693 2432 77 3 0 chr6 14659073 14659373 -174620181 - AluY SINE Alu -10 301 1 14444 75 24 30 chr6 14659373 14661058 -174618496 - HERV17 LTR ERV1 -6933 1693 22 3536 111 46 4 chr6 14661082 14661586 -174617968 - LTR17 LTR ERV1 0 780 256 298 215 0 35 chr6 14661635 14661720 -174617834 - L1MDa LINE L1 -4645 1737 1573 254 223 152 0 chr6 14662025 14662137 -174617417 - L1MDa LINE L1 -3888 2654 2526 2209 126 34 28 chr6 14662352 14662633 -174616921 + MER7C DNA MER2_type 10 295 -2733 2541 153 36 2 chr6 14662633 14663045 -174616509 + MSTB LTR MaLR 1 426 0 2209 126 34 28 chr6 14663045 14663121 -174616433 + MER7C DNA MER2_type 295 369 -233 1703 141 35 0 chr6 14663124 14663380 -174616174 - AluSx SINE Alu -12 300 36 487 276 58 12 chr6 14663394 14663648 -174615906 - L1MDa LINE L1 -4538 2002 1776 261 213 117 0 chr6 14663743 14663837 -174615717 - L1M4 LINE L1 -2924 3222 3118 599 285 92 14 chr6 14663857 14664282 -174615272 - L1M4 LINE L1 -3131 3015 2558 2022 130 0 17 chr6 14664322 14664623 -174614931 - AluSg SINE Alu -14 296 1 2268 156 22 34 chr6 14664631 14664939 -174614615 + MSTB LTR MaLR 22 325 -101 1547 113 41 0 chr6 14664939 14665160 -174614394 + MER30 DNA MER1_type 1 230 0 2268 156 22 34 chr6 14665160 14665261 -174614293 + MSTB LTR MaLR 325 426 0 404 228 94 34 chr6 14665284 14665433 -174614121 - L1M4 LINE L1 -3618 2528 2371 204 40 0 0 chr6 14666535 14666560 -174612994 + (CA)n Simple_repeat Simple_repeat 1 25 0 1826 177 44 36 chr6 14666621 14667006 -174612548 - MLT1B LTR MaLR 0 390 3 6933 123 123 117 chr6 14667434 14669121 -174610433 + pTR5 LTR ERV1 742 2438 0 3555 156 23 58 chr6 14669626 14670352 -174609202 + L1MB3 LINE L1 5450 6150 -33 21 0 0 0 chr6 14670378 14670399 -174609155 + AT_rich Low_complexity Low_complexity 1 21 0 857 165 44 118 chr6 14670665 14670789 -174608765 + L1MA9 LINE L1 6024 6119 -193 198 0 0 0 chr6 14670789 14670811 -174608743 + (CA)n Simple_repeat Simple_repeat 1 22 0 857 165 44 118 chr6 14670811 14670958 -174608596 + L1MA9 LINE L1 6119 6275 -37 338 295 127 52 chr6 14671594 14671963 -174607591 + LTR16C LTR ERVL 90 486 -5 2190 120 0 3 chr6 14672071 14672371 -174607183 + AluSx SINE Alu 1 299 -13 275 0 29 0 chr6 14672443 14672478 -174607076 + (TG)n Simple_repeat Simple_repeat 2 37 0 194 0 39 0 chr6 14672618 14672644 -174606910 + (TG)n Simple_repeat Simple_repeat 2 28 0 338 304 88 23 chr6 14672749 14672920 -174606634 - MIR3 SINE MIR -7 201 20 726 270 93 9 chr6 14672997 14673223 -174606331 - MIR SINE MIR 0 262 18 2829 69 0 0 chr6 14674877 14675238 -174604316 + L1PA8 LINE L1 5805 6165 -7 2618 205 22 16 chr6 14675741 14676296 -174603258 + MER74A LTR ERVL 1 558 0 2026 130 7 20 chr6 14676702 14677003 -174602551 + AluSx SINE Alu 1 297 -15 369 264 163 20 chr6 14677811 14678057 -174601497 + L1M4 LINE L1 4789 5069 -1077 1262 213 39 18 chr6 14678077 14678359 -174601195 - AluJo SINE Alu -20 292 5 4839 173 64 61 chr6 14678419 14680111 -174599443 - pTR5 LTR ERV1 0 2438 741 24 32 0 0 chr6 14680672 14680703 -174598851 + AT_rich Low_complexity Low_complexity 1 31 0 218 232 36 0 chr6 14680726 14680782 -174598772 + L2 LINE L2 1726 1783 -1531 2172 118 0 10 chr6 14682405 14682711 -174596843 + AluSx SINE Alu 1 303 -9 569 175 60 96 chr6 14682748 14682822 -174596732 + MER5A DNA MER1_type 1 76 -113 2206 115 3 0 chr6 14682822 14683117 -174596437 + AluSg SINE Alu 1 296 -14 569 175 60 96 chr6 14683117 14683208 -174596346 + MER5A DNA MER1_type 76 160 -29 601 292 55 18 chr6 14683890 14684164 -174595390 + Charlie7 DNA MER1_type 91 374 -2238 2201 152 26 5 chr6 14684220 14684602 -174594952 + MLT1B LTR MaLR 1 390 0 5477 162 34 27 chr6 14684643 14686156 -174593398 + pTR5 LTR ERV1 743 2438 0 321 210 190 0 chr6 14686161 14686261 -174593293 + Charlie7 DNA MER1_type 450 568 -2044 1441 183 84 7 chr6 14686551 14686825 -174592729 + AluJo SINE Alu 1 295 -17 261 222 58 159 chr6 14687100 14687307 -174592247 + HERVL LTR ERVL 1194 1379 -4275 428 136 0 86 chr6 14687457 14687538 -174592016 - MLT1A1 LTR MaLR 0 365 292 1799 185 3 3 chr6 14687539 14687842 -174591712 + AluJo SINE Alu 3 305 -7 354 174 41 10 chr6 14687867 14687965 -174591589 + GA-rich Low_complexity Low_complexity 4 104 0 1446 137 144 4 chr6 14687983 14688252 -174591302 - MLT1A1 LTR MaLR -55 341 2 1696 235 76 12 chr6 14688270 14688772 -174590782 - MER74B LTR ERVL -4 618 85 1435 148 169 57 chr6 14688806 14689046 -174590508 - MSTA LTR MaLR 0 428 216 2109 117 4 0 chr6 14689046 14689356 -174590198 + AluSx SINE Alu 1 311 0 1435 148 169 57 chr6 14689356 14689499 -174590055 - MSTA LTR MaLR -212 216 1 2922 162 31 23 chr6 14689860 14689919 -174589635 + MER89 LTR ERV1 1 58 -501 2133 107 0 0 chr6 14689919 14690231 -174589323 + AluSx SINE Alu 3 314 0 2496 87 0 3 chr6 14690233 14690544 -174589010 + AluSq SINE Alu 1 310 -3 2922 162 31 23 chr6 14690544 14691035 -174588519 + MER89 LTR ERV1 58 559 0 1378 170 78 40 chr6 14691430 14691853 -174587701 + L1MC5 LINE L1 7487 7925 -36 928 230 108 65 chr6 14691911 14692392 -174587162 - LTR8A LTR ERV1 0 727 116 407 178 78 93 chr6 14692498 14692673 -174586881 - LTR8 LTR ERV1 -396 145 1 * 1062 190 86 23 chr6 14692673 14693098 -174586456 + MER74A LTR ERVL 50 556 -2 1541 155 4 30 chr6 14693107 14693378 -174586176 - AluJb SINE Alu -13 299 36 2048 75 21 108 chr6 14693405 14693739 -174585815 + AluYb8 SINE Alu 1 305 -13 2041 138 0 13 chr6 14693750 14694055 -174585499 + AluSx SINE Alu 2 302 -10 607 226 0 16 chr6 14694067 14694191 -174585363 + FLAM_A SINE Alu 1 122 -11 1441 69 0 21 chr6 14694368 14694557 -174584997 + AluSq SINE Alu 128 312 -1 2516 63 0 13 chr6 14694848 14695163 -174584391 - AluY SINE Alu 0 311 1 204 40 0 0 chr6 14695353 14695378 -174584176 + (A)n Simple_repeat Simple_repeat 1 25 0 1892 173 33 92 chr6 14695671 14695938 -174583616 - MLT1C LTR MaLR 0 467 186 1857 187 152 0 chr6 14695938 14696360 -174583194 - MER66B LTR ERV1 0 486 1 1892 173 33 92 chr6 14696360 14696466 -174583088 - MLT1C LTR MaLR -281 186 127 2100 106 3 14 chr6 14696466 14696759 -174582795 - AluSx SINE Alu -17 295 6 1892 173 33 92 chr6 14696759 14696875 -174582679 - MLT1C LTR MaLR -340 127 6 281 229 86 0 chr6 14697168 14697238 -174582316 - L2 LINE L2 -46 3267 3192 2958 189 20 16 chr6 14697312 14697872 -174581682 - MER68 LTR ERV1 0 562 1 2564 51 0 0 chr6 14698615 14698911 -174580643 + AluY SINE Alu 1 296 -15 339 25 0 0 chr6 14699201 14699241 -174580313 + (TG)n Simple_repeat Simple_repeat 2 41 0 1848 169 0 7 chr6 14699432 14699734 -174579820 + AluJb SINE Alu 1 300 -12 375 277 57 21 chr6 14700309 14700450 -174579104 + MIR SINE MIR 1 146 -116 264 242 0 45 chr6 14700688 14700754 -174578800 + LTR67 LTR ERVL 3 65 -492 337 246 113 49 chr6 14700785 14700927 -174578627 + LTR67 LTR ERVL 140 290 -267 311 272 92 82 chr6 14701014 14701220 -174578334 + LTR67 LTR ERVL 329 536 -21 227 311 23 45 chr6 14701336 14701468 -174578086 + L2 LINE L2 2821 2949 -323 1967 122 31 88 chr6 14701507 14701652 -174577902 - MER65A LTR ERV1 -1 444 292 2056 125 7 0 chr6 14701652 14701940 -174577614 - AluSx SINE Alu -22 290 1 1967 122 31 88 chr6 14701940 14701971 -174577583 - MER65A LTR ERV1 -153 292 261 2410 77 0 32 chr6 14701971 14702283 -174577271 + AluY SINE Alu 1 302 -9 1967 122 31 88 chr6 14702283 14702490 -174577064 - MER65A LTR ERV1 -184 261 82 1280 126 5 0 chr6 14702490 14702680 -174576874 - AluSg/x SINE Alu 0 310 120 547 86 0 25 chr6 14702680 14702761 -174576793 - MER65A LTR ERV1 -366 79 1 * 700 218 51 13 chr6 14702761 14702916 -174576638 + MLT1J LTR MaLR 105 265 -246 353 238 50 10 chr6 14703112 14703213 -174576341 - LTR67 LTR ERVL -52 505 401 356 272 152 58 chr6 14703289 14703480 -174576074 - LTR67 LTR ERVL -263 294 86 400 218 69 10 chr6 14703486 14703587 -174575967 - MER91C DNA MER1_type -1 139 33 472 295 58 12 chr6 14703588 14703761 -174575793 - MLT1J2 LTR MaLR 0 450 270 210 238 0 0 chr6 14704276 14704318 -174575236 + CT-rich Low_complexity Low_complexity 1 42 0 2945 49 3 0 chr6 14704318 14704684 -174574870 - L1PA8 LINE L1 -1 6171 5805 3595 55 4 0 chr6 14705354 14705806 -174573748 - L1PA8 LINE L1 0 6172 5719 219 324 0 0 chr6 14706645 14706716 -174572838 + MER91B DNA MER1_type 1 71 -69 208 250 0 0 chr6 14706783 14706835 -174572719 + MER91B DNA MER1_type 79 130 -60 21 82 0 0 chr6 14707199 14707248 -174572306 + AT_rich Low_complexity Low_complexity 1 49 0 2223 94 24 0 chr6 14707339 14707627 -174571927 + AluSp SINE Alu 1 295 -18 1198 236 217 12 chr6 14707881 14708296 -174571258 - MLT1F LTR MaLR -42 500 1 2064 130 10 0 chr6 14708465 14708772 -174570782 + AluSq SINE Alu 1 310 -3 356 141 0 14 chr6 14708772 14708843 -174570711 + (GGGGA)n Simple_repeat Simple_repeat 3 72 0 419 362 74 29 chr6 14708912 14709763 -174569791 + L2 LINE L2 2202 3093 -179 6620 58 134 64 chr6 14710022 14711114 -174568440 + MER11A LTR ERVK 2 1266 0 749 254 84 50 chr6 14711265 14711683 -174567871 + MLT1L LTR MaLR 109 607 -8 215 190 68 181 chr6 14711751 14711834 -174567720 - MIR SINE MIR -2 260 169 2263 102 0 0 chr6 14711834 14712144 -174567410 - AluY SINE Alu 0 310 1 215 190 68 181 chr6 14712144 14712280 -174567274 - MIR SINE MIR -93 169 65 2145 111 7 3 chr6 14712897 14713186 -174566368 + AluSx SINE Alu 1 290 -22 996 175 52 65 chr6 14713468 14713585 -174565969 - MER33 DNA MER1_type -2261 324 207 1957 178 89 0 chr6 14713585 14713945 -174565609 + MSTD LTR MaLR 3 394 -2 996 175 52 65 chr6 14713945 14714118 -174565436 - MER33 DNA MER1_type -2378 207 38 396 196 164 32 chr6 14714290 14714479 -174565075 - L1ME4a LINE L1 -34 6087 5874 186 185 56 56 chr6 14714726 14714780 -174564774 + L2 LINE L2 2596 2649 -665 2413 92 0 3 chr6 14715079 14715383 -174564171 + AluSg SINE Alu 1 303 -7 2470 225 99 46 chr6 14715911 14716652 -174562902 + Zaphod DNA AcHobo 19 720 -3311 2127 115 10 7 chr6 14716652 14716957 -174562597 - AluSq SINE Alu -5 308 3 2470 225 99 46 chr6 14716957 14716987 -174562567 + Zaphod DNA AcHobo 720 747 -3284 1446 173 79 22 chr6 14716987 14717264 -174562290 + AluJo SINE Alu 1 293 -19 2470 225 99 46 chr6 14717264 14717383 -174562171 + Zaphod DNA AcHobo 747 957 -3074 1962 107 43 11 chr6 14717407 14717688 -174561866 - AluSc SINE Alu -19 290 1 2436 89 0 10 chr6 14717731 14718045 -174561509 + AluY SINE Alu 1 311 0 1866 199 22 10 chr6 14718050 14718462 -174561092 + Zaphod DNA AcHobo 3607 4023 -8 832 247 44 68 chr6 14718587 14718929 -174560625 + L1MC4 LINE L1 7331 7672 -323 677 192 0 8 chr6 14719027 14719152 -174560402 + FLAM_C SINE Alu 1 124 -19 420 65 97 0 chr6 14719152 14719276 -174560278 + (TA)n Simple_repeat Simple_repeat 1 136 0 458 207 7 64 chr6 14719835 14719975 -174559579 - L1ME LINE L1 -3997 2724 2593 360 250 35 5 chr6 14719975 14720118 -174559436 + MER58 DNA MER1_type 1 2420 0 561 195 29 17 chr6 14720118 14720292 -174559262 - L1ME LINE L1 -3980 2560 2385 1384 172 0 52 chr6 14720297 14720547 -174559007 - AluJo SINE Alu -75 237 1 1584 246 38 12 chr6 14720547 14721047 -174558507 - L1ME LINE L1 -4160 2380 1868 316 305 28 22 chr6 14721119 14721260 -174558294 - L1ME LINE L1 -5937 593 21 489 290 122 42 chr6 14721884 14722145 -174557409 - MLT1K LTR MaLR -33 555 316 2234 121 0 3 chr6 14722145 14722450 -174557104 + AluSx SINE Alu 1 304 -8 489 290 122 42 chr6 14722450 14722465 -174557089 - MLT1K LTR MaLR -272 316 304 2179 92 35 0 chr6 14722465 14722748 -174556806 - AluSp SINE Alu -20 293 1 489 290 122 42 chr6 14722748 14722914 -174556640 - MLT1K LTR MaLR -284 304 5 290 254 0 0 chr6 14722954 14723017 -174556537 - MIR SINE MIR -6 256 194 2668 199 73 50 chr6 14723026 14723606 -174555948 + L1ME2 LINE L1 5362 5966 -198 2391 87 0 0 chr6 14723606 14723904 -174555650 + AluSg SINE Alu 1 298 -12 2668 199 73 50 chr6 14723904 14724108 -174555446 + L1ME2 LINE L1 5966 6164 0 270 215 31 0 chr6 14724226 14724291 -174555263 + MER116 DNA Mariner 13 79 -1 656 63 0 0 chr6 14724438 14724517 -174555037 + MADE1 DNA Mariner 1 79 -1 30 69 0 0 chr6 14725305 14725363 -174554191 + GC_rich Low_complexity Low_complexity 1 58 0 27 49 0 0 chr6 14725637 14725678 -174553876 + GC_rich Low_complexity Low_complexity 1 41 0 267 269 54 130 chr6 14726360 14726655 -174552899 - L2 LINE L2 -27 3286 3015 1614 182 55 3 chr6 14726655 14726984 -174552570 - MER7A DNA MER2_type -1 345 2 267 269 54 130 chr6 14726984 14727004 -174552550 - L2 LINE L2 -298 3015 2995 214 291 18 0 chr6 14728588 14728643 -174550911 - L2 LINE L2 -30 3242 3187 2301 96 0 0 chr6 14729707 14729998 -174549556 - AluSg SINE Alu -19 291 1 1833 158 0 33 chr6 14730006 14730309 -174549245 - AluJo SINE Alu -19 293 1 550 187 0 0 chr6 14730509 14730616 -174548938 + L1MB8 LINE L1 3673 3779 -2367 4136 159 64 93 chr6 14730658 14730889 -174548665 + L1MB8 LINE L1 4494 4730 -1448 564 154 0 39 chr6 14730889 14730993 -174548561 + FRAM SINE Alu 74 173 -3 4136 159 64 93 chr6 14730993 14731601 -174547953 + L1MB8 LINE L1 4730 5355 -823 1611 188 98 22 chr6 14731601 14731968 -174547586 - MSTD LTR MaLR 0 396 2 4136 159 64 93 chr6 14731968 14732775 -174546779 + L1MB8 LINE L1 5355 6177 -1 1050 160 12 0 chr6 14733124 14733293 -174546261 - AluJb SINE Alu -22 290 120 2451 84 7 0 chr6 14733639 14733947 -174545607 - AluSg SINE Alu 0 310 1 898 118 0 15 chr6 14734629 14734764 -174544790 + FLAM_C SINE Alu 1 133 0 2523 50 0 50 chr6 14735106 14735428 -174544126 - AluY SINE Alu -5 306 1 2238 128 0 6 chr6 14735568 14735880 -174543674 - AluSx SINE Alu 0 312 3 35 24 0 0 chr6 14735913 14735955 -174543599 + AT_rich Low_complexity Low_complexity 1 42 0 738 148 26 0 chr6 14735955 14736070 -174543484 - FLAM_C SINE Alu -15 118 1 2361 85 3 0 chr6 14736560 14736855 -174542699 + AluSp SINE Alu 1 296 -17 322 291 10 10 chr6 14737232 14737335 -174542219 - L1ME4a LINE L1 -211 5910 5808 1899 151 0 31 chr6 14738034 14738353 -174541201 - AluJb SINE Alu -3 309 1 590 270 94 4 chr6 14738678 14738911 -174540643 - L1ME3 LINE L1 -7 6155 5902 2428 91 10 0 chr6 14739790 14740098 -174539456 + AluSq SINE Alu 1 311 -2 2152 122 3 0 chr6 14740438 14740733 -174538821 + AluSg SINE Alu 1 296 -14 29 47 0 0 chr6 14741452 14741495 -174538059 + AT_rich Low_complexity Low_complexity 1 43 0 2269 92 0 13 chr6 14741521 14741824 -174537730 + AluSq SINE Alu 1 299 -14 2134 135 3 0 chr6 14741868 14742179 -174537375 - AluSx SINE Alu 0 312 1 2544 62 0 0 chr6 14742189 14742494 -174537060 - AluY SINE Alu -6 305 1 21 0 0 0 chr6 14743144 14743165 -174536389 + AT_rich Low_complexity Low_complexity 1 21 0 2370 104 7 0 chr6 14743336 14743643 -174535911 + AluSx SINE Alu 2 310 -2 1481 92 23 5 chr6 14744028 14744246 -174535308 - L1PB1 LINE L1 -2 6149 5928 264 154 0 0 chr6 14744745 14744797 -174534757 + T-rich Low_complexity Low_complexity 1 52 0 820 130 0 22 chr6 14745144 14745282 -174534272 + AluSc SINE Alu 173 307 -2 821 181 0 0 chr6 14745674 14745807 -174533747 + FLAM_C SINE Alu 7 139 -4 2727 152 61 8 chr6 14746141 14746667 -174532887 - L1MB3 LINE L1 -1 6182 5629 857 128 149 0 chr6 14746767 14746915 -174532639 - AluSg/x SINE Alu -2 307 138 314 238 30 50 chr6 14747715 14747816 -174531738 - MIR SINE MIR -67 141 43 651 209 40 40 chr6 14748115 14748292 -174531262 + MER104 DNA MER2_type 1 177 -3 1013 171 46 37 chr6 14748673 14748889 -174530665 + AluJo SINE Alu 87 304 -8 2213 83 38 3 chr6 14749168 14749456 -174530098 + AluSx SINE Alu 1 298 -14 2277 92 3 0 chr6 14750507 14750800 -174528754 - AluSg SINE Alu -16 294 1 21 0 0 0 chr6 14751370 14751391 -174528163 + AT_rich Low_complexity Low_complexity 1 21 0 1905 118 0 67 chr6 14751739 14752053 -174527501 + AluSx SINE Alu 2 294 -18 1782 144 13 39 chr6 14753488 14753800 -174525754 - AluJb SINE Alu -8 304 1 2081 135 0 0 chr6 14753828 14754125 -174525429 + AluJb SINE Alu 1 297 -15 252 225 28 70 chr6 14754143 14754214 -174525340 - MLT1K LTR MaLR -35 553 486 797 144 0 0 chr6 14754624 14754742 -174524812 + FLAM_C SINE Alu 3 120 -13 2360 93 10 0 chr6 14755048 14755350 -174524204 - AluSq SINE Alu 0 313 9 2517 74 0 7 chr6 14755362 14755672 -174523882 - AluSx SINE Alu -4 308 1 233 29 29 0 chr6 14756044 14756078 -174523476 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2155 114 0 10 chr6 14756476 14756773 -174522781 + AluSg SINE Alu 1 294 -16 565 260 57 111 chr6 14756914 14757286 -174522268 - MLT1L LTR MaLR -45 508 207 2031 101 73 0 chr6 14757685 14757971 -174521583 + AluSx SINE Alu 1 307 -5 2262 126 0 0 chr6 14757979 14758288 -174521266 + AluJb SINE Alu 1 309 -3 1630 108 24 12 chr6 14758332 14758557 -174520997 - HSMAR2 DNA Mariner 0 1302 1072 1715 175 19 7 chr6 14758557 14758865 -174520689 - AluJb SINE Alu 0 312 1 1630 108 24 12 chr6 14758865 14758888 -174520666 - HSMAR2 DNA Mariner -230 1072 1051 705 164 0 9 chr6 14758917 14759033 -174520521 - FLAM_C SINE Alu -27 116 2 1094 151 0 6 chr6 14759038 14759210 -174520344 - AluJb SINE Alu -8 304 134 2422 92 0 7 chr6 14759210 14759513 -174520041 - AluSg SINE Alu -8 302 2 1016 132 18 12 chr6 14759520 14759687 -174519867 - HSMAR2 DNA Mariner -1134 168 1 3397 171 75 58 chr6 14759751 14759840 -174519714 + LTR39 LTR ERV1 1 87 -696 2336 102 0 0 chr6 14759840 14760145 -174519409 + AluSx SINE Alu 1 305 -7 3397 171 75 58 chr6 14760145 14760263 -174519291 + LTR39 LTR ERV1 87 202 -581 2247 113 7 0 chr6 14760263 14760564 -174518990 + AluSx SINE Alu 1 303 -9 3397 171 75 58 chr6 14760564 14761037 -174518517 + LTR39 LTR ERV1 202 699 -84 1761 113 0 4 chr6 14761037 14761284 -174518270 + AluSx SINE Alu 57 302 -10 3397 171 75 58 chr6 14761284 14761371 -174518183 + LTR39 LTR ERV1 699 783 0 1030 187 128 0 chr6 14761880 14762083 -174517471 - LTR39 LTR ERV1 0 783 555 1476 94 0 49 chr6 14762120 14762344 -174517210 + AluY SINE Alu 87 299 -12 826 167 0 0 chr6 14762367 14762505 -174517049 + FRAM SINE Alu 39 176 0 2580 86 0 0 chr6 14762517 14762830 -174516724 + AluSq SINE Alu 1 313 0 203 296 120 19 chr6 14763041 14763149 -174516405 + MIR3 SINE MIR 3 121 -87 1580 159 60 63 chr6 14763151 14763377 -174516177 - MLT1A1 LTR MaLR -1 364 138 2679 30 0 0 chr6 14763377 14763675 -174515879 - AluY SINE Alu -13 298 1 1580 159 60 63 chr6 14763675 14763813 -174515741 - MLT1A1 LTR MaLR -227 138 1 1750 167 16 13 chr6 14763901 14764207 -174515347 - AluJb SINE Alu -5 307 1 183 42 0 0 chr6 14764217 14764241 -174515313 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1900 108 7 58 chr6 14764245 14764540 -174515014 - AluSg SINE Alu -30 280 1 472 178 5 226 chr6 14764567 14764659 -174514895 - MIR SINE MIR -70 192 81 775 164 0 50 chr6 14764659 14764799 -174514755 + FLAM_C SINE Alu 1 133 0 472 178 5 226 chr6 14764799 14764822 -174514732 - MIR SINE MIR -181 81 139 2331 129 0 0 chr6 14764822 14765132 -174514422 + AluSx SINE Alu 1 310 -2 472 178 5 226 chr6 14765132 14765223 -174514331 - MIR SINE MIR -122 140 31 2045 128 3 7 chr6 14765309 14765606 -174513948 + AluSg SINE Alu 1 296 -14 1261 188 40 12 chr6 14766048 14766298 -174513256 - AluJb SINE Alu -25 287 31 4400 147 58 86 chr6 14766309 14767606 -174511948 - pTR5 LTR ERV1 -142 2296 743 2276 93 10 0 chr6 14767686 14767987 -174511567 - AluSq SINE Alu -9 304 1 2258 104 10 0 chr6 14768354 14768653 -174510901 - AluSx SINE Alu -10 302 1 1188 170 24 32 chr6 14768687 14768934 -174510620 + L1MB8 LINE L1 5934 6178 0 225 222 42 42 chr6 14768988 14769060 -174510494 - MIR3 SINE MIR -26 182 111 2267 113 0 6 chr6 14769226 14769537 -174510017 + AluSq SINE Alu 1 309 -4 1127 163 13 53 chr6 14769655 14769882 -174509672 + AluJo SINE Alu 87 304 -8 632 130 123 43 chr6 14770669 14770807 -174508747 + AluJb SINE Alu 143 291 -21 543 101 0 0 chr6 14770808 14770887 -174508667 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 23 0 0 0 chr6 14770910 14770933 -174508621 + AT_rich Low_complexity Low_complexity 1 23 0 1724 141 39 33 chr6 14770974 14771280 -174508274 - AluJo SINE Alu -4 308 1 618 241 121 0 chr6 14771422 14771588 -174507966 + MIR SINE MIR 15 200 -62 2227 122 3 0 chr6 14771588 14771899 -174507655 + AluSx SINE Alu 1 312 0 2214 117 0 3 chr6 14772934 14773233 -174506321 + AluSx SINE Alu 1 298 -14 586 270 128 18 chr6 14773304 14773530 -174506024 - MLT1L LTR MaLR 0 615 365 237 190 0 69 chr6 14773610 14773630 -174505924 - MLT1L LTR MaLR -414 201 181 3156 110 131 8 chr6 14773630 14774158 -174505396 + LTR59 LTR ERV1 1 593 -4 237 190 0 69 chr6 14774158 14774195 -174505359 - MLT1L LTR MaLR -434 181 148 624 184 97 92 chr6 14774199 14774285 -174505269 - MER5A DNA MER1_type -2 187 103 2210 87 0 63 chr6 14774285 14774617 -174504937 - AluY SINE Alu 0 311 1 624 184 97 92 chr6 14774617 14774715 -174504839 - MER5A DNA MER1_type -86 103 2 2463 86 0 10 chr6 14774830 14775143 -174504411 + AluSx SINE Alu 1 310 -2 2090 110 65 0 chr6 14775145 14775436 -174504118 + AluSg SINE Alu 1 310 0 1054 255 63 94 chr6 14775458 14776011 -174503543 - MLT1F LTR MaLR 0 542 7 354 23 0 0 chr6 14776696 14776739 -174502815 + (TG)n Simple_repeat Simple_repeat 2 44 0 2256 81 3 3 chr6 14777518 14777929 -174501625 + AluSq SINE Alu 1 411 0 279 323 22 9 chr6 14779341 14779484 -174500070 - MIR SINE MIR -62 146 34 966 297 58 20 chr6 14779921 14780315 -174499239 - L2 LINE L2 -22 3291 2883 1113 244 22 35 chr6 14780328 14780644 -174498910 - LTR16A LTR ERVL -20 430 119 1275 279 55 4 chr6 14780714 14781187 -174498367 - L2 LINE L2 -426 2888 2392 602 195 2 0 chr6 14781187 14781301 -174498253 - MLT1D LTR MaLR 0 505 312 1247 139 143 58 chr6 14781304 14781563 -174497991 + AluSx SINE Alu 3 283 -29 183 80 0 0 chr6 14781630 14781655 -174497899 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 91 3 10 chr6 14781829 14782125 -174497429 - AluSg SINE Alu -16 294 1 850 207 50 18 chr6 14782220 14782442 -174497112 - MIR SINE MIR -26 236 8 209 350 97 58 chr6 14784643 14784954 -174494600 - L2 LINE L2 0 3272 2950 213 298 38 92 chr6 14784966 14785097 -174494457 + MIR SINE MIR 20 143 -119 21 57 0 0 chr6 14785447 14785482 -174494072 + AT_rich Low_complexity Low_complexity 1 35 0 310 183 0 87 chr6 14786967 14787071 -174492483 - MIR SINE MIR -62 146 99 765 164 0 15 chr6 14787340 14787474 -174492080 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chr6 14787728 14787751 -174491803 + AT_rich Low_complexity Low_complexity 1 23 0 2155 86 0 17 chr6 14787978 14788269 -174491285 - AluSg SINE Alu -24 286 1 2764 134 125 15 chr6 14789124 14789669 -174489885 + L1MB3 LINE L1 5572 6176 -7 191 425 78 26 chr6 14790477 14790630 -174488924 - L2 LINE L2 -4 3268 3108 26 50 0 0 chr6 14790954 14790994 -174488560 + AT_rich Low_complexity Low_complexity 1 40 0 40 49 0 0 chr6 14791153 14791214 -174488340 + AT_rich Low_complexity Low_complexity 1 61 0 481 285 73 19 chr6 14794340 14794516 -174485038 - MIR SINE MIR -66 142 7 236 247 0 17 chr6 14794859 14794918 -174484636 - MIR3 SINE MIR -51 157 99 2126 122 3 0 chr6 14794919 14795230 -174484324 + AluSq SINE Alu 1 312 -1 314 358 44 0 chr6 14795788 14795925 -174483629 + L1MC/D LINE L1 5455 5597 -2211 492 243 77 12 chr6 14796049 14796218 -174483336 - MER104 DNA Tc2 0 180 1 1305 154 49 45 chr6 14796712 14796933 -174482621 - L1MB8 LINE L1 -65 6113 5889 2208 88 34 3 chr6 14796933 14797227 -174482327 - AluSc SINE Alu -4 305 3 1305 154 49 45 chr6 14797227 14797272 -174482282 - L1MB8 LINE L1 -289 5889 5846 288 119 0 0 chr6 14797633 14797675 -174481879 - L1MB8 LINE L1 -65 6113 6072 180 0 0 0 chr6 14798253 14798273 -174481281 + (A)n Simple_repeat Simple_repeat 1 20 0 678 248 95 0 chr6 14798501 14798723 -174480831 + L2 LINE L2 1710 1952 -1362 180 206 0 0 chr6 14798724 14798758 -174480796 + L2 LINE L2 2490 2523 -791 24 0 0 0 chr6 14798869 14798893 -174480661 + AT_rich Low_complexity Low_complexity 1 24 0 534 217 0 0 chr6 14798950 14799056 -174480498 - FLAM_C SINE Alu -1 142 37 473 194 71 10 chr6 14799236 14799334 -174480220 + HsTC2 DNA Tc2 43 146 -1752 281 241 71 27 chr6 14799412 14799555 -174479999 + HsTC2 DNA Tc2 1261 1591 -307 1220 150 0 5 chr6 14799555 14799748 -174479806 + AluJb SINE Alu 84 275 -37 967 221 80 23 chr6 14799751 14800050 -174479504 + HsTC2 DNA Tc2 1577 1892 -6 762 252 66 84 chr6 14800083 14800181 -174479373 + L2 LINE L2 2588 2686 -627 2395 65 0 19 chr6 14800181 14800491 -174479063 - AluY SINE Alu -7 304 1 762 252 66 84 chr6 14800491 14801131 -174478423 + L2 LINE L2 2686 3311 -2 325 288 40 71 chr6 14801597 14801795 -174477759 + MARNA DNA Mariner 27 218 -368 433 252 50 19 chr6 14802012 14802171 -174477383 + MARNA DNA Mariner 327 490 -96 255 291 101 50 chr6 14802265 14802444 -174477110 + MIR3 SINE MIR 20 207 -1 21 36 0 0 chr6 14802503 14802531 -174477023 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr6 14802766 14802825 -174476729 + AT_rich Low_complexity Low_complexity 1 59 0 679 226 113 15 chr6 14803389 14803593 -174475961 - MER58A DNA MER1_type 0 224 1 475 231 153 26 chr6 14803671 14803900 -174475654 - MIR SINE MIR -1 261 4 1909 143 16 7 chr6 14803981 14804288 -174475266 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr6 14804374 14804395 -174475159 + AT_rich Low_complexity Low_complexity 1 21 0 2092 124 0 3 chr6 14807118 14807424 -174472130 + AluSx SINE Alu 1 305 -7 456 19 0 0 chr6 14808034 14808087 -174471467 + (CA)n Simple_repeat Simple_repeat 1 53 0 432 311 92 13 chr6 14808481 14808796 -174470758 + L1 LINE L1 3919 4258 -1888 1358 206 7 22 chr6 14809023 14809299 -174470255 + AluJb SINE Alu 6 277 -35 471 314 88 18 chr6 14810547 14810935 -174468619 + HAL1 LINE L1 1370 1784 -723 368 250 92 32 chr6 14810979 14811231 -174468323 + L1ME2 LINE L1 1330 1722 -5225 1660 188 52 20 chr6 14811235 14811581 -174467973 + MLT1A1 LTR MaLR 1 357 -8 1020 236 141 25 chr6 14811581 14812215 -174467339 + L1ME2 LINE L1 1717 2410 -4547 349 273 79 24 chr6 14812220 14812385 -174467169 + L1ME2 LINE L1 2583 2756 -4382 2191 269 94 7 chr6 14812468 14813297 -174466257 + L1ME2 LINE L1 4569 5469 -1488 1140 199 61 0 chr6 14813293 14813555 -174465999 + L1MA4 LINE L1 6018 6295 -5 * 3043 246 47 20 chr6 14813570 14814920 -174464634 + L1ME2 LINE L1 5454 6964 -11 1116 157 106 75 chr6 14815277 14815570 -174463984 + AluJb SINE Alu 1 302 0 1470 143 30 158 chr6 14816271 14816664 -174462890 + Tigger3(Golem) DNA MER2_type 1 3023 -6 6748 200 75 37 chr6 14816691 14818378 -174461176 + L1MB7 LINE L1 3836 5456 -1539 1478 174 20 33 chr6 14818378 14818683 -174460871 - AluJb SINE Alu -9 303 3 6748 200 75 37 chr6 14818683 14818799 -174460755 + L1MB7 LINE L1 5456 5566 -1429 1793 178 0 10 chr6 14818799 14819097 -174460457 + AluSx SINE Alu 1 295 -17 6748 200 75 37 chr6 14819097 14819306 -174460248 + L1MB7 LINE L1 5566 5765 -1230 2378 81 0 13 chr6 14819306 14819613 -174459941 + AluY SINE Alu 1 303 -8 6748 200 75 37 chr6 14819613 14820596 -174458958 + L1MB7 LINE L1 5765 6995 0 2697 242 174 61 chr6 14820587 14822598 -174456956 + L1MCa LINE L1 2 2395 -4031 * 1839 154 20 3 chr6 14822598 14822890 -174456664 + AluJb SINE Alu 1 297 -15 2697 242 174 61 chr6 14822890 14823267 -174456287 + L1MCa LINE L1 2395 2728 -3698 3259 109 4 30 chr6 14823272 14823765 -174455789 + LTR3b LTR ERVK 21 500 0 2627 245 85 30 chr6 14823768 14824431 -174455123 + L1MCa LINE L1 2726 3465 -2961 216 0 0 0 chr6 14824431 14824455 -174455099 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2627 245 85 30 chr6 14824455 14824808 -174454746 + L1MCa LINE L1 3465 3797 -2629 272 220 17 0 chr6 14824857 14824916 -174454638 + L1MC4a LINE L1 6624 6683 -1125 3616 215 28 62 chr6 14825107 14826199 -174453355 + L1MCa LINE L1 3779 4833 -1593 1798 181 3 3 chr6 14826627 14826926 -174452628 + AluJb SINE Alu 1 299 -13 1428 229 66 13 chr6 14827207 14827587 -174451967 + MER74B LTR ERVL 139 538 -84 296 161 36 18 chr6 14827537 14827593 -174451961 - MER88 LTR ERVL -310 154 98 * 25 0 0 0 chr6 14828398 14828423 -174451131 + AT_rich Low_complexity Low_complexity 1 25 0 314 210 16 0 chr6 14828871 14828933 -174450621 + U7 snRNA snRNA 1 63 0 307 293 218 30 chr6 14828936 14829247 -174450307 + HAL1b LINE L1 98 349 -999 1709 164 0 55 chr6 14829247 14829576 -174449978 + AluJb SINE Alu 1 311 -1 307 293 218 30 chr6 14829576 14829869 -174449685 + HAL1b LINE L1 349 816 -532 1045 196 107 38 chr6 14829882 14830199 -174449355 + L1ME1 LINE L1 5811 6149 -17 309 187 27 27 chr6 14830539 14830614 -174448940 + L1MC4a LINE L1 5957 6031 -1777 2102 114 7 10 chr6 14830652 14830951 -174448603 - AluSx SINE Alu -12 300 3 234 257 147 64 chr6 14830957 14831175 -174448379 + L1MC4a LINE L1 6108 6343 -1465 24 0 0 0 chr6 14831181 14831205 -174448349 + AT_rich Low_complexity Low_complexity 1 24 0 1768 110 8 11 chr6 14831248 14831512 -174448042 - AluSq SINE Alu -19 294 32 265 295 60 20 chr6 14831659 14831808 -174447746 + L1MC4 LINE L1 7872 8026 -16 337 200 47 118 chr6 14832390 14832560 -174446994 + L1ME4a LINE L1 5964 6121 0 385 284 26 17 chr6 14832923 14833039 -174446515 - L2 LINE L2 -4 3309 3193 226 359 148 0 chr6 14833428 14833556 -174445998 - L2 LINE L2 -10 3262 3116 557 228 56 41 chr6 14833848 14834048 -174445506 + L1ME LINE L1 5543 5662 -459 872 162 6 62 chr6 14834195 14834374 -174445180 + AluJo SINE Alu 114 282 -30 2255 88 0 10 chr6 14834439 14834735 -174444819 + AluSc SINE Alu 1 293 -16 22 0 0 0 chr6 14834892 14834914 -174444640 + GC_rich Low_complexity Low_complexity 1 22 0 1648 170 18 0 chr6 14834914 14835071 -174444483 - AluJo SINE Alu -30 282 116 2152 112 7 3 chr6 14835071 14835376 -174444178 - AluSx SINE Alu -6 306 1 1648 170 18 0 chr6 14835376 14835495 -174444059 - AluJo SINE Alu -196 116 1 267 318 100 6 chr6 14835864 14836034 -174443520 + L2 LINE L2 2090 2275 -1039 1040 124 6 19 chr6 14836133 14836294 -174443260 + FRAM SINE Alu 1 159 -17 266 71 0 24 chr6 14836750 14836792 -174442762 + (CAG)n Simple_repeat Simple_repeat 1 41 0 332 248 223 25 chr6 14836850 14837007 -174442547 - MIR SINE MIR -18 244 57 287 321 12 111 chr6 14837277 14837439 -174442115 + L2 LINE L2 3107 3252 -20 1447 177 23 35 chr6 14837664 14837974 -174441580 + AluJo SINE Alu 3 308 -4 1989 152 3 10 chr6 14838056 14838365 -174441189 - AluSx SINE Alu -5 307 1 688 203 31 0 chr6 14838778 14838906 -174440648 + Tigger3(Golem) DNA MER2_type 2896 3027 -2 2099 127 13 7 chr6 14839675 14839974 -174439580 + AluSx SINE Alu 1 301 -11 29 0 0 0 chr6 14840019 14840048 -174439506 + AT_rich Low_complexity Low_complexity 1 29 0 1855 123 22 7 chr6 14840437 14840750 -174438804 - AluSg SINE Alu 0 318 2 2212 96 30 0 chr6 14841045 14841346 -174438208 + AluSq SINE Alu 1 310 -3 2226 118 0 3 chr6 14841361 14841665 -174437889 + AluSx SINE Alu 1 303 -9 696 151 66 20 chr6 14842098 14842250 -174437304 + L1ME1 LINE L1 5392 5550 -616 1059 117 0 7 chr6 14842256 14842410 -174437144 + AluSq SINE Alu 1 153 -160 2334 112 0 0 chr6 14842552 14842864 -174436690 + AluSx SINE Alu 1 312 0 1927 222 75 10 chr6 14842870 14843352 -174436202 + L1ME1 LINE L1 5543 6055 -111 1429 179 18 47 chr6 14843354 14843628 -174435926 + Tigger7 DNA MER2_type 2 267 -466 655 149 0 0 chr6 14843629 14843723 -174435831 + Tigger7 DNA MER2_type 2390 2483 -4 401 224 35 26 chr6 14843724 14843840 -174435714 + L1ME1 LINE L1 6050 6166 0 216 0 0 0 chr6 14844193 14844217 -174435337 + (T)n Simple_repeat Simple_repeat 1 24 0 300 299 142 8 chr6 14844227 14844361 -174435193 - L2 LINE L2 -962 2352 2201 230 314 6 63 chr6 14844858 14845017 -174434537 + MER5B DNA MER1_type 4 153 -25 21 0 0 0 chr6 14847189 14847210 -174432344 + AT_rich Low_complexity Low_complexity 1 21 0 654 207 73 69 chr6 14847431 14847677 -174431877 - MIR SINE MIR 0 262 16 21 0 0 0 chr6 14848129 14848150 -174431404 + AT_rich Low_complexity Low_complexity 1 21 0 989 158 163 5 chr6 14848224 14848372 -174431182 - MER46A DNA MER2_type -2495 236 46 2166 120 10 0 chr6 14848372 14848671 -174430883 + AluSx SINE Alu 1 302 -10 989 158 163 5 chr6 14848671 14848725 -174430829 - MER46A DNA MER2_type -2685 46 2 2118 123 10 3 chr6 14850282 14850590 -174428964 + AluSx SINE Alu 1 310 -2 1655 109 0 0 chr6 14850952 14851163 -174428391 + AluSq SINE Alu 1 211 -102 462 297 63 18 chr6 14851514 14851800 -174427754 + L2 LINE L2 1698 1996 -1318 736 233 7 7 chr6 14851819 14851965 -174427589 - AluJb SINE Alu -27 285 140 283 321 79 21 chr6 14852030 14852220 -174427334 + L2 LINE L2 2100 2300 -1014 338 398 25 8 chr6 14852891 14853130 -174426424 + L2 LINE L2 2563 2805 -509 1868 164 0 10 chr6 14853137 14853441 -174426113 + AluJb SINE Alu 1 301 -11 2217 127 0 10 chr6 14853913 14854227 -174425327 + AluSx SINE Alu 1 311 -1 2332 71 0 26 chr6 14854371 14854682 -174424872 + AluY SINE Alu 1 303 -8 2192 82 0 3 chr6 14854869 14855151 -174424403 + AluY SINE Alu 17 297 -14 2354 84 0 10 chr6 14855204 14855501 -174424053 + AluSc SINE Alu 1 294 -15 2145 109 13 26 chr6 14855511 14855815 -174423739 + AluSx SINE Alu 1 300 -12 1669 135 90 11 chr6 14855839 14856106 -174423448 - AluJo SINE Alu -20 292 5 1450 208 3 18 chr6 14856931 14857215 -174422339 + AluJb SINE Alu 1 280 -32 252 0 0 0 chr6 14857611 14857639 -174421915 + (CA)n Simple_repeat Simple_repeat 1 28 0 282 292 0 10 chr6 14858010 14858106 -174421448 - MIR3 SINE MIR 0 208 114 22 0 0 0 chr6 14858215 14858237 -174421317 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr6 14859953 14860009 -174419545 + GC_rich Low_complexity Low_complexity 1 56 0 262 89 18 18 chr6 14860028 14860084 -174419470 + (CGG)n Simple_repeat Simple_repeat 2 57 0 213 39 0 0 chr6 14860225 14860242 -174419312 + (CTG)n Simple_repeat Simple_repeat 1 43 0 213 39 0 0 chr6 14860242 14860268 -174419286 + (CTG)n Simple_repeat Simple_repeat 3 28 0 211 239 9 53 chr6 14860469 14860582 -174418972 + G-rich Low_complexity Low_complexity 6 113 0 254 167 37 74 chr6 14860633 14860741 -174418813 + (CGGGG)n Simple_repeat Simple_repeat 5 108 0 186 43 0 0 chr6 14861891 14861914 -174417640 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2056 99 8 0 chr6 14861915 14862178 -174417376 - AluSx SINE Alu -47 265 1 245 257 52 81 chr6 14862565 14862701 -174416853 + L1ME LINE L1 5494 5625 -496 516 289 0 7 chr6 14863387 14863522 -174416032 - LTR67 LTR ERVL 0 557 424 2247 219 81 20 chr6 14864093 14864636 -174414918 - MLT1E LTR MaLR 0 593 18 1157 217 14 0 chr6 14864725 14864946 -174414608 - MER58A DNA MER1_type 0 224 1 4729 166 63 39 chr6 14865369 14866883 -174412671 + pTR5 LTR ERV1 742 2438 0 2106 162 22 11 chr6 14866884 14867248 -174412306 + THE1C LTR MaLR 8 375 0 934 186 71 89 chr6 14867266 14867616 -174411938 + MER2 DNA MER2_type 1 344 0 295 269 0 0 chr6 14867671 14867738 -174411816 - MER5A DNA MER1_type -105 84 18 1478 170 22 11 chr6 14867768 14868039 -174411515 - AluJo SINE Alu -38 274 1 1852 150 3 17 chr6 14868561 14868861 -174410693 - AluJo SINE Alu -16 296 1 855 134 0 0 chr6 14868915 14869034 -174410520 + FLAM_C SINE Alu 1 119 -24 207 0 0 0 chr6 14869035 14869058 -174410496 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2272 93 28 0 chr6 14869069 14869360 -174410194 + AluSg SINE Alu 1 299 -11 238 278 0 14 chr6 14869560 14869632 -174409922 + A-rich Low_complexity Low_complexity 5 75 0 197 289 99 92 chr6 14869749 14869891 -174409663 - L2 LINE L2 -1 3271 3129 2071 118 35 0 chr6 14869950 14870239 -174409315 - AluSq SINE Alu -14 299 1 2432 88 0 0 chr6 14870670 14870976 -174408578 + AluSg SINE Alu 1 306 -4 2086 117 0 7 chr6 14871479 14871778 -174407776 + AluSx SINE Alu 1 297 -15 1504 198 118 32 chr6 14871924 14872389 -174407165 + MLT1D LTR MaLR 1 505 0 1098 271 89 26 chr6 14872927 14873352 -174406202 - LTR16A1 LTR ERVL 0 457 6 2143 127 3 0 chr6 14873359 14873658 -174405896 - AluSx SINE Alu -12 300 1 359 292 0 10 chr6 14874195 14874291 -174405263 - MER102b DNA MER1_type 0 341 247 2602 59 0 0 chr6 14874786 14875092 -174404462 + AluY SINE Alu 1 306 -5 3579 143 28 69 chr6 14875129 14875409 -174404145 + L1MB8 LINE L1 5482 5772 -406 1853 136 32 4 chr6 14875409 14875688 -174403866 + AluJb SINE Alu 1 287 -25 3579 143 28 69 chr6 14875688 14876129 -174403425 + L1MB8 LINE L1 5772 6173 -5 271 114 0 0 chr6 14876229 14876273 -174403281 + L2 LINE L2 3267 3310 -3 183 256 0 0 chr6 14876387 14876426 -174403128 + L2 LINE L2 3215 3253 -19 292 131 107 6 chr6 14876633 14876717 -174402837 - MER5A DNA MER1_type 0 189 47 25 0 0 0 chr6 14876735 14876760 -174402794 + AT_rich Low_complexity Low_complexity 1 25 0 2456 207 79 2 chr6 14876810 14877784 -174401770 - L1MC4 LINE L1 -143 7899 6691 2254 222 78 28 chr6 14877786 14878148 -174401406 - MLT1E LTR MaLR 0 593 251 1984 138 7 10 chr6 14878148 14878439 -174401115 + AluJb SINE Alu 1 290 -22 2280 121 0 0 chr6 14878444 14878750 -174400804 + AluSx SINE Alu 1 306 -6 2254 222 78 28 chr6 14878750 14878934 -174400620 - MLT1E LTR MaLR -345 248 15 654 221 43 0 chr6 14879020 14879183 -174400371 - L1MC4 LINE L1 -1372 6670 6501 513 205 0 0 chr6 14879184 14879296 -174400258 + (TA)n Simple_repeat Simple_repeat 1 112 0 1591 131 5 0 chr6 14879296 14879518 -174400036 - AluSg/x SINE Alu -13 297 75 2018 138 24 0 chr6 14880344 14880640 -174398914 - AluSq SINE Alu -10 303 1 2370 93 0 0 chr6 14881446 14881737 -174397817 + AluSx SINE Alu 1 291 -21 288 77 0 0 chr6 14882327 14882366 -174397188 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr6 14882520 14882544 -174397010 + (T)n Simple_repeat Simple_repeat 1 24 0 265 252 126 50 chr6 14882930 14883049 -174396505 + MIR SINE MIR 20 147 -61 1423 162 41 48 chr6 14883313 14883566 -174395988 + L1MB4 LINE L1 5887 6139 -41 1790 185 0 7 chr6 14883566 14883863 -174395691 + AluJb SINE Alu 1 295 -17 1423 162 41 48 chr6 14883863 14883899 -174395655 + L1MB4 LINE L1 6139 6174 -6 497 271 20 13 chr6 14883934 14884085 -174395469 + L1MC4a LINE L1 5771 5922 -1886 713 224 0 12 chr6 14884093 14884254 -174395300 - MIR SINE MIR -43 219 61 2274 109 0 6 chr6 14884257 14884569 -174394985 - AluSg SINE Alu 0 310 1 468 239 168 7 chr6 14884600 14884755 -174394799 + MER5A DNA MER1_type 4 183 -6 2492 67 0 13 chr6 14885061 14885376 -174394178 - AluY SINE Alu 0 311 1 267 189 0 0 chr6 14885846 14885899 -174393655 + MIR SINE MIR 100 152 -110 316 87 0 0 chr6 14885935 14885981 -174393573 + MER91B DNA MER1_type 18 63 -127 290 282 0 0 chr6 14886014 14886099 -174393455 + MIR SINE MIR 168 252 -10 1133 75 0 0 chr6 14886362 14886496 -174393058 + AluSq/x SINE Alu 1 134 -179 522 294 51 21 chr6 14886522 14886757 -174392797 + MIR SINE MIR 12 253 -9 2372 105 0 0 chr6 14887155 14887461 -174392093 - AluSx SINE Alu -6 306 1 2322 96 7 0 chr6 14887472 14887775 -174391779 - AluSp SINE Alu -7 306 2 26 0 0 0 chr6 14888188 14888214 -174391340 + AT_rich Low_complexity Low_complexity 1 26 0 334 289 10 0 chr6 14888214 14888311 -174391243 - L1MC4 LINE L1 -1339 6703 6606 31 96 0 0 chr6 14888361 14888455 -174391099 + AT_rich Low_complexity Low_complexity 1 94 0 2072 119 10 0 chr6 14888511 14888804 -174390750 - AluSx SINE Alu -16 296 1 2310 100 3 29 chr6 14888872 14889182 -174390372 + AluSq SINE Alu 2 303 -10 1617 151 12 47 chr6 14889192 14889511 -174390043 + AluJo SINE Alu 5 312 0 30 0 0 0 chr6 14889551 14889581 -174389973 + AT_rich Low_complexity Low_complexity 1 30 0 1915 107 3 57 chr6 14889783 14889928 -174389626 + AluSc SINE Alu 1 121 -188 261 57 0 0 chr6 14889928 14889963 -174389591 + (TA)n Simple_repeat Simple_repeat 1 35 0 1915 107 3 57 chr6 14889963 14890135 -174389419 + AluSc SINE Alu 121 301 -8 2554 170 31 7 chr6 14890215 14890667 -174388887 - MLT1C LTR MaLR -4 463 1 1711 140 7 7 chr6 14890875 14891146 -174388408 - AluSx SINE Alu -29 283 13 284 256 64 64 chr6 14891271 14891396 -174388158 - MIR SINE MIR -132 130 6 1668 104 0 90 chr6 14891525 14891814 -174387740 - AluSq SINE Alu -20 293 31 3968 167 107 39 chr6 14891814 14893117 -174386437 + pTR5 LTR ERV1 743 2438 0 1958 115 38 0 chr6 14893889 14894176 -174385378 + AluSx SINE Alu 1 298 -14 858 182 13 0 chr6 14894176 14894335 -174385219 + AluJb SINE Alu 134 294 -18 482 287 40 29 chr6 14894434 14894608 -174384946 + MIR3 SINE MIR 17 192 -16 210 206 0 0 chr6 14894626 14894689 -174384865 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2184 92 0 3 chr6 14894702 14894995 -174384559 + AluSq SINE Alu 1 292 -21 2084 102 0 3 chr6 14895246 14895530 -174384024 - AluSc SINE Alu -20 289 7 467 284 22 40 chr6 14895585 14895807 -174383747 - L1MC/D LINE L1 -2287 5521 5304 434 204 35 56 chr6 14895975 14896117 -174383437 + MER58C DNA MER1_type 67 205 -10 2109 39 0 4 chr6 14896282 14896539 -174383015 + AluY SINE Alu 46 301 -10 1969 102 51 3 chr6 14896805 14897100 -174382454 - AluSx SINE Alu -3 309 1 377 288 75 7 chr6 14897244 14897390 -174382164 - MIR3 SINE MIR -50 158 3 27 0 0 0 chr6 14897444 14897471 -174382083 + AT_rich Low_complexity Low_complexity 1 27 0 2752 221 44 59 chr6 14897551 14897831 -174381723 - L1ME2 LINE L1 -44 6120 5837 2095 113 0 0 chr6 14897831 14898151 -174381403 + AluSx SINE Alu 1 320 0 2752 221 44 59 chr6 14898151 14898749 -174380805 - L1ME2 LINE L1 -327 5837 5254 2235 220 33 22 chr6 14898776 14899253 -174380301 - L1ME2 LINE L1 -971 5175 4688 2332 88 3 0 chr6 14899253 14899560 -174379994 + AluSp SINE Alu 1 308 -5 2235 220 33 22 chr6 14899560 14899682 -174379872 - L1ME2 LINE L1 -1458 4688 4569 385 319 19 19 chr6 14899711 14899868 -174379686 - L1MEd LINE L1 -5367 752 596 2125 120 0 13 chr6 14900475 14900791 -174378763 - AluSx SINE Alu 0 312 1 215 280 200 32 chr6 14900859 14900984 -174378570 + MER5A DNA MER1_type 21 166 -23 * 516 242 174 8 chr6 14900877 14901009 -174378545 - MER5A DNA MER1_type -26 163 10 442 88 0 0 chr6 14901034 14901091 -174378463 + AluSp/q SINE Alu 156 212 -101 1755 111 8 11 chr6 14901092 14901345 -174378209 + AluSx SINE Alu 32 285 -27 210 71 0 0 chr6 14901345 14901373 -174378181 + (TAAAG)n Simple_repeat Simple_repeat 2 29 0 2168 106 0 3 chr6 14901454 14901755 -174377799 - AluSg SINE Alu -10 300 1 1991 91 10 49 chr6 14902596 14902904 -174376650 - AluSx SINE Alu -16 296 1 594 249 158 39 chr6 14902915 14903200 -174376354 - L2 LINE L2 -5 3308 2990 22 0 0 0 chr6 14903369 14903391 -174376163 + AT_rich Low_complexity Low_complexity 1 22 0 329 217 57 74 chr6 14903471 14903619 -174375935 - L2 LINE L2 -207 3065 2923 1600 260 114 41 chr6 14904556 14904685 -174374869 + L2 LINE L2 1710 1828 -1486 2064 119 0 3 chr6 14904685 14904841 -174374713 - AluSx SINE Alu -20 292 136 2357 72 0 0 chr6 14904841 14905134 -174374420 - AluSc SINE Alu -16 293 1 2064 119 0 3 chr6 14905134 14905270 -174374284 - AluSx SINE Alu -176 136 1 1600 260 114 41 chr6 14905270 14905597 -174373957 + L2 LINE L2 1828 2130 -1184 1633 149 31 76 chr6 14905597 14905684 -174373870 + MER44D DNA MER2_type 1 90 -2401 1948 106 27 20 chr6 14905684 14905812 -174373742 + AluSx SINE Alu 1 127 -185 2063 132 0 3 chr6 14905812 14906122 -174373432 + AluSg1 SINE Alu 1 309 0 1948 106 27 20 chr6 14906122 14906285 -174373269 + AluSx SINE Alu 127 294 -18 1633 149 31 76 chr6 14906285 14906552 -174373002 + MER44D DNA MER2_type 90 609 0 1600 260 114 41 chr6 14906552 14906733 -174372821 + L2 LINE L2 2130 2395 -919 2717 158 32 29 chr6 14906735 14907108 -174372446 + MLT1D LTR MaLR 12 390 -115 1251 138 142 58 chr6 14907108 14907408 -174372146 - AluSx SINE Alu 0 324 3 2717 158 32 29 chr6 14907408 14907525 -174372029 + MLT1D LTR MaLR 390 505 0 1471 279 55 4 chr6 14907525 14907998 -174371556 + L2 LINE L2 2392 2888 -426 1108 251 47 33 chr6 14908025 14908384 -174371170 + LTR16A LTR ERVL 67 430 -20 1110 297 58 20 chr6 14908397 14908791 -174370763 + L2 LINE L2 2883 3291 -22 323 323 22 9 chr6 14909228 14909371 -174370183 + MIR SINE MIR 34 179 -62 2129 81 3 3 chr6 14910783 14911203 -174368351 - AluSq SINE Alu 0 420 1 354 23 0 0 chr6 14911982 14912025 -174367529 + (CA)n Simple_repeat Simple_repeat 2 44 0 1043 251 65 96 chr6 14912710 14913263 -174366291 + MLT1F LTR MaLR 7 542 0 1976 110 65 0 chr6 14913285 14913576 -174365978 - AluSg SINE Alu 0 310 1 2103 87 66 0 chr6 14913578 14913867 -174365687 - AluSg SINE Alu -2 308 1 2334 86 0 10 chr6 14913869 14914182 -174365372 - AluSx SINE Alu -2 310 1 628 184 97 92 chr6 14914297 14914395 -174365159 + MER5A DNA MER1_type 2 103 -86 2079 87 0 63 chr6 14914395 14914727 -174364827 + AluY SINE Alu 1 311 0 628 184 97 92 chr6 14914727 14914813 -174364741 + MER5A DNA MER1_type 103 187 -2 240 190 0 69 chr6 14914817 14914854 -174364700 + MLT1L LTR MaLR 148 181 -434 3154 110 131 8 chr6 14914854 14915382 -174364172 - LTR59 LTR ERV1 -4 593 1 240 190 0 69 chr6 14915382 14915402 -174364152 + MLT1L LTR MaLR 181 201 -414 600 270 128 18 chr6 14915482 14915708 -174363846 + MLT1L LTR MaLR 365 615 0 2088 117 0 3 chr6 14915779 14916078 -174363476 - AluSx SINE Alu -14 298 1 2107 122 3 0 chr6 14917113 14917424 -174362130 - AluSx SINE Alu 0 312 1 696 241 121 0 chr6 14917424 14917590 -174361964 - MIR SINE MIR -62 200 15 1571 147 39 33 chr6 14917732 14918038 -174361516 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr6 14918079 14918102 -174361452 + AT_rich Low_complexity Low_complexity 1 23 0 411 163 0 0 chr6 14918124 14918204 -174361350 + CT-rich Low_complexity Low_complexity 1 80 0 506 141 156 44 chr6 14918205 14918340 -174361214 - AluSc SINE Alu -19 290 141 222 349 47 47 chr6 14919263 14919435 -174360119 - L2 LINE L2 -407 2907 2736 2258 99 0 3 chr6 14919442 14919754 -174359800 - AluSq SINE Alu -2 311 1 2061 200 51 16 chr6 14921143 14921593 -174357961 + MLT1C LTR MaLR 2 467 0 231 377 75 0 chr6 14921614 14921720 -174357834 - MLT1K LTR MaLR -145 443 330 355 167 0 17 chr6 14921727 14921787 -174357767 - MER46A DNA MER2_type 0 236 178 273 105 105 53 chr6 14921748 14921805 -174357749 + MER46A DNA MER2_type 87 146 -90 * 379 294 105 24 chr6 14922329 14922545 -174357009 - MIR SINE MIR -26 236 6 354 325 70 41 chr6 14922663 14922906 -174356648 - MIR SINE MIR -10 252 3 2125 118 0 3 chr6 14923340 14923645 -174355909 - AluSx SINE Alu -8 304 1 279 0 0 0 chr6 14926189 14926220 -174353334 + (TG)n Simple_repeat Simple_repeat 2 32 0 1629 153 3 29 chr6 14926798 14927106 -174352448 + AluJo SINE Alu 1 300 -12 290 245 296 13 chr6 14928532 14928691 -174350863 + L2 LINE L2 3104 3307 -6 640 271 70 35 chr6 14928810 14929039 -174350515 + MIR SINE MIR 18 254 -8 239 191 0 21 chr6 14929714 14929761 -174349793 + MIR SINE MIR 103 148 -114 407 194 54 43 chr6 14931010 14931103 -174348451 - L2 LINE L2 -25 3247 3154 214 258 103 31 chr6 14932422 14932519 -174347035 + MIR SINE MIR 49 152 -56 960 103 7 0 chr6 14933075 14933220 -174346334 + L1PA13 LINE L1 6018 6163 0 2350 65 0 0 chr6 14933625 14933919 -174345635 + AluY SINE Alu 1 294 -17 617 315 60 13 chr6 14934037 14934272 -174345282 + MIR SINE MIR 9 254 -8 2159 99 3 0 chr6 14934571 14934864 -174344690 + AluSg SINE Alu 1 294 -16 225 0 0 0 chr6 14934880 14934905 -174344649 + (GA)n Simple_repeat Simple_repeat 2 26 0 2396 33 7 23 chr6 14936580 14936882 -174342672 + AluY SINE Alu 3 299 -12 226 307 67 13 chr6 14938255 14938330 -174341224 - MIR SINE MIR -51 211 133 368 234 94 23 chr6 14938648 14938776 -174340778 + MER117 DNA MER1_type 5 141 -56 1847 197 95 12 chr6 14938787 14939218 -174340336 + MLT1C LTR MaLR 1 467 0 325 198 105 23 chr6 14939845 14939931 -174339623 + MIR SINE MIR 115 207 -55 180 0 0 0 chr6 14940221 14940241 -174339313 + (CAG)n Simple_repeat Simple_repeat 3 22 0 1881 113 0 82 chr6 14940508 14940826 -174338728 + AluJb SINE Alu 1 292 -20 346 287 37 24 chr6 14942262 14942408 -174337146 - MIR SINE MIR -62 146 11 261 163 0 0 chr6 14943350 14943399 -174336155 + (TG)n Simple_repeat Simple_repeat 2 50 0 1319 189 69 71 chr6 14943479 14943871 -174335683 + MER96B DNA MER1_type? 25 415 -2 425 316 105 46 chr6 14945019 14945456 -174334098 - HAL1 LINE L1 -1855 652 190 591 15 0 0 chr6 14947847 14947915 -174331639 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2253 98 14 7 chr6 14947915 14948200 -174331354 - AluSp SINE Alu -23 290 1 633 156 7 14 chr6 14948359 14948500 -174331054 + CT-rich Low_complexity Low_complexity 2 141 0 768 286 86 26 chr6 14948604 14948943 -174330611 - L3 LINE CR1 -695 882 524 449 330 44 76 chr6 14949851 14950560 -174328994 + L2 LINE L2 2217 2902 -412 21 0 0 0 chr6 14951109 14951130 -174328424 + AT_rich Low_complexity Low_complexity 1 21 0 390 151 0 0 chr6 14951253 14951326 -174328228 + CT-rich Low_complexity Low_complexity 2 74 0 463 211 37 9 chr6 14951573 14951682 -174327872 + MLT1F1 LTR MaLR 6 117 -450 1460 251 99 12 chr6 14951772 14952259 -174327295 - L1MC4a LINE L1 -1963 5845 5317 484 264 112 48 chr6 14952516 14952811 -174326743 - L1MC4a LINE L1 -1095 5051 4738 317 137 20 0 chr6 14952818 14952869 -174326685 + U7 snRNA snRNA 2 53 -10 1423 187 87 22 chr6 14952904 14953225 -174326329 - MER2 DNA MER2_type -2 342 1 963 26 0 0 chr6 14953399 14953513 -174326041 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1622 188 35 0 chr6 14953536 14953823 -174325731 - AluJo SINE Alu -15 297 1 488 258 0 39 chr6 14954149 14954277 -174325277 - L2 LINE L2 0 3313 3191 361 125 33 33 chr6 14954303 14954423 -174325131 + (TA)n Simple_repeat Simple_repeat 2 121 0 413 323 30 36 chr6 14954669 14954836 -174324718 + MLT1K LTR MaLR 252 417 -171 1461 135 107 21 chr6 14954880 14955161 -174324393 + MSTA LTR MaLR 1 305 -123 4867 150 18 32 chr6 14955165 14956161 -174323393 - MER11C LTR ERVK 0 1071 1 746 154 88 0 chr6 14956161 14956278 -174323276 + MSTA LTR MaLR 300 428 0 237 222 48 32 chr6 14956282 14956345 -174323209 + MLT1K LTR MaLR 465 528 -60 373 220 48 30 chr6 14957113 14957280 -174322274 + MER20B DNA MER1_type 1 172 -47 206 32 32 0 chr6 14957799 14957830 -174321724 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1677 111 7 117 chr6 14957834 14958141 -174321413 - AluSg SINE Alu -37 273 1 2254 84 42 0 chr6 14959813 14960099 -174319455 - AluSc SINE Alu -11 298 1 249 33 0 0 chr6 14960192 14960222 -174319332 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1932 164 50 24 chr6 14960767 14961146 -174318408 + MLT1B LTR MaLR 1 389 -1 2427 69 30 3 chr6 14962670 14962973 -174316581 + AluY SINE Alu 1 311 0 236 239 87 11 chr6 14963811 14963903 -174315651 - MER5C DNA MER1_type -8 316 218 319 262 56 19 chr6 14963932 14964039 -174315515 - MER5C DNA MER1_type -212 112 2 221 313 162 0 chr6 14964411 14964510 -174315044 - L2 LINE L2 0 3313 3199 541 205 0 31 chr6 14965462 14965589 -174313965 + L2 LINE L2 3190 3312 -1 1908 211 54 18 chr6 14966547 14967118 -174312436 + L1MB7 LINE L1 1431 2115 -4269 * 2345 200 97 35 chr6 14967117 14967796 -174311758 + L1MB7 LINE L1 3635 4355 -2027 3736 154 71 43 chr6 14967815 14968307 -174311247 + L1MB7 LINE L1 4849 5326 -1094 2220 109 20 0 chr6 14968307 14968611 -174310943 + AluSx SINE Alu 3 312 0 3736 154 71 43 chr6 14968611 14969565 -174309989 + L1MB7 LINE L1 5326 6323 -97 962 159 12 18 chr6 14969571 14969741 -174309813 + AluJo SINE Alu 121 289 -23 290 197 14 0 chr6 14969748 14969819 -174309735 + L1MB3 LINE L1 6111 6182 -1 512 214 162 12 chr6 14969920 14970093 -174309461 - ORSL DNA AcHobo -76 199 1 21 0 0 0 chr6 14970605 14970626 -174308928 + AT_rich Low_complexity Low_complexity 1 21 0 462 193 73 27 chr6 14971715 14971865 -174307689 + MIR3 SINE MIR 22 178 -30 1910 199 146 7 chr6 14971945 14972383 -174307171 + MLT1D LTR MaLR 7 505 0 362 311 25 12 chr6 14974902 14975063 -174304491 + MIR SINE MIR 65 227 -35 1626 123 119 12 chr6 14975182 14975466 -174304088 + AluSg SINE Alu 1 311 0 491 270 15 115 chr6 14976574 14976714 -174302840 - MIR SINE MIR 0 262 160 2118 132 3 0 chr6 14976714 14977009 -174302545 - AluSx SINE Alu -16 296 1 491 270 15 115 chr6 14977009 14977138 -174302416 - MIR SINE MIR -102 160 20 203 159 45 0 chr6 14977315 14977359 -174302195 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2316 111 0 0 chr6 14978559 14978865 -174300689 - AluSx SINE Alu -6 306 1 291 104 0 0 chr6 14979414 14979462 -174300092 + (TG)n Simple_repeat Simple_repeat 1 48 0 247 228 0 18 chr6 14980674 14980731 -174298823 - L2 LINE L2 0 3272 3217 1840 169 7 3 chr6 14981343 14981644 -174297910 - AluJo SINE Alu -10 302 1 1401 197 76 80 chr6 14981758 14982220 -174297334 + MLT1C LTR MaLR 8 467 0 369 300 22 39 chr6 14982222 14982402 -174297152 - MIR SINE MIR -76 186 10 1817 110 57 47 chr6 14983057 14983358 -174296196 - AluSx SINE Alu -8 304 1 420 181 12 0 chr6 14983370 14983453 -174296101 - MER5A DNA MER1_type -84 105 22 571 250 6 121 chr6 14983494 14983850 -174295704 - L1ME4a LINE L1 -225 6314 6000 761 181 0 0 chr6 14984458 14984585 -174294969 - FLAM_A SINE Alu -6 127 1 529 212 10 0 chr6 14985431 14985530 -174294024 - MER117 DNA MER1_type -97 100 1 182 170 213 0 chr6 14987599 14987646 -174291908 + L2 LINE L2 3235 3291 -22 388 244 119 28 chr6 14987703 14987879 -174291675 + MIR SINE MIR 68 259 -3 221 136 0 23 chr6 14988525 14988569 -174290985 + (TTC)n Simple_repeat Simple_repeat 2 44 0 2100 110 13 3 chr6 14991832 14992133 -174287421 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 14992289 14992313 -174287241 + AT_rich Low_complexity Low_complexity 1 24 0 3070 148 139 129 chr6 14992595 14992909 -174286645 - L1MC3 LINE L1 0 7785 7475 2097 123 0 0 chr6 14992909 14993209 -174286345 - AluSq SINE Alu -13 300 1 3070 148 139 129 chr6 14993209 14993479 -174286075 - L1MC3 LINE L1 -310 7475 7209 231 250 29 29 chr6 14993479 14993583 -174285971 - MLT1F1 LTR MaLR -450 117 14 3070 148 139 129 chr6 14993583 14993853 -174285701 - L1MC3 LINE L1 -576 7209 6818 1165 207 27 51 chr6 14993877 14994210 -174285344 - L1ME4a LINE L1 -780 5784 5460 402 173 0 0 chr6 14994216 14994291 -174285263 + CT-rich Low_complexity Low_complexity 1 75 0 566 276 91 5 chr6 14994291 14994512 -174285042 - L1ME4a LINE L1 -1086 5478 5239 2688 222 19 8 chr6 14994576 14995219 -174284335 - L1ME4a LINE L1 -2078 4486 3837 359 238 0 0 chr6 14995221 14995305 -174284249 - L1ME4a LINE L1 -5101 944 861 25 51 0 0 chr6 14995306 14995345 -174284209 + AT_rich Low_complexity Low_complexity 1 39 0 488 265 59 15 chr6 14995515 14995651 -174283903 - MIR SINE MIR -84 178 37 313 341 92 13 chr6 14995785 14996014 -174283540 - MLT1L LTR MaLR -23 592 346 2221 110 0 0 chr6 14996014 14996323 -174283231 + AluSc SINE Alu 1 309 0 299 114 0 0 chr6 14996595 14996639 -174282915 - MSTC LTR MaLR -12 416 373 2062 88 21 0 chr6 14996653 14996937 -174282617 - L1PA8 LINE L1 -2 6170 5881 2661 114 16 10 chr6 14996937 14997323 -174282231 - MSTC LTR MaLR -40 388 1 1991 130 0 7 chr6 14997802 14998103 -174281451 - AluSg SINE Alu -11 299 1 373 333 125 21 chr6 14998691 14998883 -174280671 - MIR SINE MIR -31 231 20 512 165 39 29 chr6 14998902 14999005 -174280549 + MER5B DNA MER1_type 1 104 -74 2298 146 59 7 chr6 14999033 14999437 -174280117 - MSTB1 LTR MaLR -3 429 5 243 223 253 33 chr6 14999689 14999847 -174279707 - L1ME3A LINE L1 -230 5940 5764 1554 170 43 0 chr6 14999885 15000162 -174279392 + AluJb SINE Alu 1 289 -23 379 290 61 20 chr6 15000173 15000664 -174278890 - L1ME3A LINE L1 -644 5526 4987 933 248 76 51 chr6 15000672 15001067 -174278487 - MLT1I LTR MaLR 0 409 5 706 158 83 0 chr6 15001346 15001466 -174278088 + FLAM_A SINE Alu 2 131 -2 302 262 36 12 chr6 15002745 15002829 -174276725 + L3 LINE CR1 1384 1469 -108 4478 145 58 48 chr6 15002836 15004222 -174275332 + pTR5 LTR ERV1 743 2438 0 357 24 0 0 chr6 15004233 15004275 -174275279 + (TA)n Simple_repeat Simple_repeat 2 43 0 946 245 77 44 chr6 15004341 15004763 -174274791 - MLT1C LTR MaLR -5 462 1 347 303 42 14 chr6 15005493 15005635 -174273919 + L1ME4a LINE L1 5962 6107 -14 2303 94 0 3 chr6 15006650 15006958 -174272596 - AluSc SINE Alu -2 307 1 256 276 0 13 chr6 15007612 15007688 -174271866 + C-rich Low_complexity Low_complexity 4 78 0 1809 179 0 3 chr6 15007749 15008061 -174271493 - AluJo SINE Alu -1 311 1 2064 120 17 0 chr6 15008138 15008437 -174271117 + AluSx SINE Alu 1 304 -8 308 312 58 1 chr6 15008900 15009049 -174270505 + MIR SINE MIR 20 177 -64 282 247 136 0 chr6 15011446 15011527 -174268027 + MLT1J1 LTR MaLR 1 92 -354 310 218 13 13 chr6 15011528 15011606 -174267948 + MLT1J1 LTR MaLR 369 446 0 1343 163 66 42 chr6 15011653 15011941 -174267613 - AluJb SINE Alu -12 300 6 2650 205 5 51 chr6 15012149 15012183 -174267371 - MLT2B3 LTR ERVL -6 548 514 405 0 0 0 chr6 15012183 15012228 -174267326 + (CA)n Simple_repeat Simple_repeat 2 46 0 2650 205 5 51 chr6 15012228 15012398 -174267156 - MLT2B3 LTR ERVL -40 514 338 2153 135 27 43 chr6 15012398 15012768 -174266786 - THE1B LTR MaLR 0 364 1 2650 205 5 51 chr6 15012768 15013132 -174266422 - MLT2B3 LTR ERVL -216 338 5 333 47 0 0 chr6 15013986 15014029 -174265525 + (TG)n Simple_repeat Simple_repeat 1 43 0 2212 106 0 0 chr6 15014637 15014940 -174264614 - AluSq SINE Alu -10 303 1 294 298 87 0 chr6 15015318 15015422 -174264132 - MIR SINE MIR -61 201 89 1620 199 89 35 chr6 15015638 15016010 -174263544 - MSTD LTR MaLR 0 396 5 207 235 29 29 chr6 15016187 15016255 -174263299 + CT-rich Low_complexity Low_complexity 5 72 0 557 229 135 86 chr6 15016417 15016662 -174262892 - LTR41 LTR ERVL -7 766 510 459 226 185 0 chr6 15016939 15017085 -174262469 - LTR41 LTR ERVL -581 192 20 292 277 53 11 chr6 15017408 15017502 -174262052 + L2 LINE L2 3172 3269 -44 366 241 46 0 chr6 15018334 15018421 -174261133 + L2 LINE L2 3223 3313 0 4307 144 60 94 chr6 15018426 15019717 -174259837 + pTR5 LTR ERV1 7 557 -157 1239 243 53 27 chr6 15019733 15020070 -174259484 - MLT1A1 LTR MaLR -15 350 5 485 301 15 36 chr6 15020074 15020270 -174259284 - MLT1K LTR MaLR -40 548 357 690 235 67 10 chr6 15020301 15020506 -174259048 - MER20B DNA MER1_type 0 219 3 1629 202 76 72 chr6 15020699 15021223 -174258331 - MLT1F LTR MaLR -13 529 4 414 149 11 21 chr6 15022269 15022363 -174257191 + CT-rich Low_complexity Low_complexity 2 94 0 1601 164 0 25 chr6 15022365 15022645 -174256909 - AluJo SINE Alu -39 273 1 497 229 107 16 chr6 15023373 15023495 -174256059 + MIR SINE MIR 21 153 -109 1877 148 62 28 chr6 15023495 15023852 -174255702 + THE1C LTR MaLR 1 369 -6 2177 114 0 0 chr6 15024027 15024325 -174255229 - AluSx SINE Alu -13 299 2 350 356 62 21 chr6 15026113 15026402 -174253152 + L2 LINE L2 2808 3108 -164 324 204 7 40 chr6 15027823 15027975 -174251579 + T-rich Low_complexity Low_complexity 4 150 0 220 254 36 0 chr6 15028553 15028608 -174250946 + CT-rich Low_complexity Low_complexity 1 57 0 273 367 0 11 chr6 15030051 15030141 -174249413 + MIR SINE MIR 36 124 -84 1469 161 32 57 chr6 15030194 15030510 -174249044 + AluJb SINE Alu 1 308 -4 1429 209 85 49 chr6 15031114 15031217 -174248337 + MLT1C LTR MaLR 6 104 -363 2207 110 0 3 chr6 15031217 15031526 -174248028 + AluSg SINE Alu 1 308 -2 1429 209 85 49 chr6 15031526 15031868 -174247686 + MLT1C LTR MaLR 104 467 0 489 17 0 0 chr6 15031889 15031947 -174247607 + (CA)n Simple_repeat Simple_repeat 2 59 0 591 208 47 0 chr6 15034487 15034593 -174244961 + FLAM_A SINE Alu 2 112 -30 233 324 164 27 chr6 15035032 15035545 -174244009 - L2 LINE L2 -338 2976 2394 1088 257 170 13 chr6 15036069 15036458 -174243096 + MLT1J2 LTR MaLR 1 450 0 1852 167 0 7 chr6 15037216 15037510 -174242044 - AluSx SINE Alu -20 292 1 336 191 0 0 chr6 15037695 15037779 -174241775 + CT-rich Low_complexity Low_complexity 2 85 0 847 211 0 0 chr6 15038915 15039062 -174240492 - FRAM SINE Alu -26 150 4 2059 128 0 0 chr6 15040952 15041248 -174238306 - AluSx SINE Alu -16 296 1 6309 48 10 15 chr6 15041492 15042297 -174237257 - L1PA8 LINE L1 0 6172 5372 1174 150 0 0 chr6 15042543 15042716 -174236838 - AluSg/x SINE Alu -2 308 136 304 242 63 0 chr6 15042801 15042896 -174236658 + MIR3 SINE MIR 101 201 -7 227 325 187 0 chr6 15043154 15043320 -174236234 - MIR SINE MIR -21 241 45 450 336 76 4 chr6 15043441 15043679 -174235875 + L2 LINE L2 3059 3313 0 198 0 0 0 chr6 15043948 15043970 -174235584 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2544 62 0 3 chr6 15044520 15044826 -174234728 - AluY SINE Alu -6 305 1 2166 116 7 3 chr6 15045680 15045981 -174233573 - AluSx SINE Alu -10 302 1 2274 88 3 0 chr6 15046378 15046689 -174232865 - AluSp SINE Alu 0 312 1 33 25 0 0 chr6 15046689 15046729 -174232825 + AT_rich Low_complexity Low_complexity 1 40 0 691 215 53 38 chr6 15047410 15047463 -174232091 + L2 LINE L2 3102 3153 -160 1870 144 77 12 chr6 15047463 15047803 -174231751 - MER47A DNA MER2_type -4 362 1 691 215 53 38 chr6 15047803 15047958 -174231596 + L2 LINE L2 3153 3313 0 373 200 104 17 chr6 15048137 15048252 -174231302 + L3 LINE CR1 1247 1371 -206 297 299 10 21 chr6 15048325 15048422 -174231132 + MER5A DNA MER1_type 72 167 -22 195 321 27 36 chr6 15048339 15048451 -174231103 - MER5A DNA MER1_type -75 114 4 * 2173 125 0 3 chr6 15048534 15048831 -174230723 + AluSq SINE Alu 7 302 -11 1023 121 83 0 chr6 15049201 15049358 -174230196 + THE1C LTR MaLR 1 170 -205 2088 153 31 0 chr6 15050353 15050674 -174228880 - MER7A DNA MER2_type 0 346 18 228 35 0 0 chr6 15051819 15051848 -174227706 + (CA)n Simple_repeat Simple_repeat 2 30 0 194 310 70 0 chr6 15053107 15053178 -174226376 - L2 LINE L2 -42 3230 3155 349 246 68 8 chr6 15053463 15053581 -174225973 - L2 LINE L2 -4 3309 3185 3176 175 109 71 chr6 15054143 15055052 -174224502 + MER63D DNA MER1_type 2 955 -106 2208 111 0 3 chr6 15055052 15055350 -174224204 - AluSg SINE Alu -9 301 5 3176 175 109 71 chr6 15055350 15055462 -174224092 + MER63D DNA MER1_type 955 1061 0 2310 95 0 0 chr6 15055547 15055860 -174223694 + AluSg SINE Alu 1 313 0 2014 132 10 7 chr6 15056603 15056931 -174222623 - AluJb SINE Alu 0 329 1 833 185 20 0 chr6 15057214 15057365 -174222189 - FRAM SINE Alu -25 151 1 270 81 0 0 chr6 15057692 15057729 -174221825 + (A)n Simple_repeat Simple_repeat 1 37 0 2355 92 0 7 chr6 15057731 15058067 -174221487 + AluSg SINE Alu 1 310 0 216 0 0 0 chr6 15058342 15058366 -174221188 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 192 250 20 60 chr6 15058682 15058782 -174220772 + L2 LINE L2 2566 2661 -653 265 232 0 0 chr6 15058829 15058898 -174220656 + MER5A DNA MER1_type 15 83 -106 1021 245 65 23 chr6 15058939 15059311 -174220243 + L1ME1 LINE L1 5752 6119 -45 2113 244 51 16 chr6 15059334 15059583 -174219971 + L1MC4 LINE L1 6990 7229 -813 734 205 58 18 chr6 15059583 15059754 -174219800 + MER45A DNA AcHobo 1 178 0 2113 244 51 16 chr6 15059754 15060194 -174219360 + L1MC4 LINE L1 7229 7893 -149 1052 231 86 10 chr6 15060292 15060708 -174218846 - L2 LINE L2 -261 3052 2608 1151 171 139 81 chr6 15062101 15062446 -174217108 + MLT1A1 LTR MaLR 1 365 0 2158 142 40 18 chr6 15062729 15063109 -174216445 + MLT1B LTR MaLR 3 390 0 2009 169 98 0 chr6 15063113 15063563 -174215991 + MLT1B-int LTR MaLR 5 600 -771 287 186 68 0 chr6 15063567 15063626 -174215928 + MLT1B LTR MaLR 95 157 -233 1635 153 11 30 chr6 15063908 15064176 -174215378 + AluJo SINE Alu 1 263 -49 216 0 0 0 chr6 15064849 15064873 -174214681 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2175 128 3 0 chr6 15064882 15065187 -174214367 + AluSx SINE Alu 1 306 -6 471 220 0 0 chr6 15066024 15066192 -174213362 + (TG)n Simple_repeat Simple_repeat 1 168 0 629 114 0 57 chr6 15066298 15066403 -174213151 + AluJo SINE Alu 37 135 -177 307 243 68 10 chr6 15066472 15066575 -174212979 - MIR SINE MIR -30 232 124 2309 108 0 0 chr6 15066610 15066916 -174212638 + AluSx SINE Alu 1 306 -6 360 0 0 0 chr6 15067210 15067250 -174212304 + (TG)n Simple_repeat Simple_repeat 1 40 0 279 71 0 0 chr6 15067250 15067292 -174212262 + (GA)n Simple_repeat Simple_repeat 2 43 0 195 167 0 0 chr6 15067894 15067930 -174211624 - MIR SINE MIR -61 147 112 2384 95 0 3 chr6 15067940 15068246 -174211308 - AluSx SINE Alu -7 305 1 543 179 77 8 chr6 15068737 15068854 -174210700 - Charlie4 DNA MER1_type -5 1956 1832 830 188 55 143 chr6 15068899 15069016 -174210538 - MLT1A2 LTR MaLR 0 467 341 5883 66 33 3 chr6 15069016 15069773 -174209781 + LTR17 LTR ERV1 1 780 0 830 188 55 143 chr6 15069773 15070083 -174209471 - MLT1A2 LTR MaLR -126 341 2 * 1034 218 25 8 chr6 15070083 15070309 -174209245 - Charlie4 DNA MER1_type -1692 269 40 382 94 0 0 chr6 15070313 15070366 -174209188 + MLT2A1 LTR ERVL 1 53 -391 2195 82 147 0 chr6 15070444 15070763 -174208791 + MLT2A1 LTR ERVL 39 404 -40 282 233 47 0 chr6 15070767 15070853 -174208701 + L1MC4 LINE L1 6614 6703 -1339 316 62 62 0 chr6 15070856 15070904 -174208650 + MLT2A1 LTR ERVL 390 440 -4 1851 154 7 10 chr6 15072087 15072392 -174207162 + AluJb SINE Alu 6 309 -3 2222 94 0 11 chr6 15072401 15072688 -174206866 + AluSx SINE Alu 21 304 -8 2142 136 3 0 chr6 15072984 15073286 -174206268 + AluSx SINE Alu 1 303 -9 254 316 106 52 chr6 15073511 15073916 -174205638 - L1ME LINE L1 -335 5786 5360 27 0 0 0 chr6 15074059 15074086 -174205468 + AT_rich Low_complexity Low_complexity 1 27 0 315 108 31 108 chr6 15074139 15074180 -174205374 - MER41D LTR ERV1 0 557 521 2040 122 140 34 chr6 15074180 15074397 -174205157 - MSTA LTR MaLR 0 428 235 1904 162 0 3 chr6 15074397 15074693 -174204861 - AluSx SINE Alu -17 295 1 2040 122 140 34 chr6 15074693 15074861 -174204693 - MSTA LTR MaLR -193 235 2 315 108 31 108 chr6 15074861 15074884 -174204670 - MER41D LTR ERV1 -36 521 498 193 191 24 0 chr6 15074890 15074932 -174204622 - MER5B DNA MER1_type -134 44 2 369 0 0 0 chr6 15074956 15074997 -174204557 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 330 28 18 chr6 15075627 15075736 -174203818 - MIR SINE MIR 0 262 153 324 243 200 37 chr6 15076114 15076439 -174203115 + L1MC4a LINE L1 5852 6229 -1579 724 130 32 24 chr6 15076865 15076988 -174202566 + FLAM_C SINE Alu 15 138 -5 1718 230 20 81 chr6 15077006 15077215 -174202339 + L1MC5 LINE L1 6657 6877 -1084 1936 120 0 0 chr6 15077215 15077473 -174202081 + AluSx SINE Alu 39 296 -16 1718 230 20 81 chr6 15077473 15077872 -174201682 + L1MC5 LINE L1 6877 7228 -733 4045 130 13 8 chr6 15077913 15078545 -174201009 + MER41B LTR ERV1 1 635 0 421 195 0 0 chr6 15078617 15078694 -174200860 - MLT1C LTR MaLR -184 283 207 536 177 83 44 chr6 15078730 15078911 -174200643 + L1MC5 LINE L1 7309 7496 -465 1932 183 93 45 chr6 15078914 15079310 -174200244 + MLT1C LTR MaLR 1 377 -90 2116 116 10 3 chr6 15079310 15079613 -174199941 - AluSx SINE Alu -7 305 1 1932 183 93 45 chr6 15079613 15079642 -174199912 + MLT1C LTR MaLR 377 403 -64 4860 83 40 16 chr6 15079642 15080317 -174199237 + LTR8 LTR ERV1 1 691 0 1932 183 93 45 chr6 15080317 15080332 -174199222 + MLT1C LTR MaLR 403 463 -4 917 203 146 22 chr6 15080338 15080659 -174198895 + L1MC5 LINE L1 7495 7855 -106 326 240 96 68 chr6 15080712 15080858 -174198696 + MER63 DNA MER1_type 687 1062 0 2204 105 0 22 chr6 15080942 15081119 -174198435 - AluSp SINE Alu -7 306 138 2486 92 0 0 chr6 15081119 15081423 -174198131 - AluSc SINE Alu -5 304 1 2204 105 0 22 chr6 15081423 15081558 -174197996 - AluSp SINE Alu -175 138 1 1371 190 129 92 chr6 15081618 15082117 -174197437 - LTR48 LTR ERV1 0 644 161 1877 141 0 17 chr6 15082117 15082408 -174197146 + AluJo SINE Alu 1 286 -26 1371 190 129 92 chr6 15082408 15082576 -174196978 - LTR48 LTR ERV1 -483 161 1 590 221 66 0 chr6 15082594 15082730 -174196824 + MIR SINE MIR 56 200 -62 27 0 0 0 chr6 15083353 15083380 -174196174 + AT_rich Low_complexity Low_complexity 1 27 0 396 285 13 20 chr6 15084013 15084164 -174195390 + MIR SINE MIR 80 229 -33 21 0 0 0 chr6 15084247 15084268 -174195286 + AT_rich Low_complexity Low_complexity 1 21 0 309 26 0 0 chr6 15084775 15084813 -174194741 + (TC)n Simple_repeat Simple_repeat 2 39 0 341 153 14 0 chr6 15084813 15084885 -174194669 + (TA)n Simple_repeat Simple_repeat 1 73 0 2210 105 3 0 chr6 15084885 15085170 -174194384 - AluSp SINE Alu -24 289 4 293 281 95 71 chr6 15085319 15085397 -174194157 + L2 LINE L2 2344 2419 -895 2631 181 50 6 chr6 15085397 15085894 -174193660 - LTR53 LTR ERVL 0 519 1 293 281 95 71 chr6 15085894 15086153 -174193401 + L2 LINE L2 2419 2689 -625 * 400 254 44 0 chr6 15086135 15086249 -174193305 - MER91A DNA MER1_type -76 120 2 254 332 113 43 chr6 15086378 15086776 -174192778 + L2 LINE L2 2828 3253 -19 222 37 0 0 chr6 15086868 15086895 -174192659 + (GA)n Simple_repeat Simple_repeat 2 28 0 480 111 0 0 chr6 15086907 15086979 -174192575 + (TA)n Simple_repeat Simple_repeat 2 73 0 256 289 44 0 chr6 15087514 15087604 -174191950 - MIR3 SINE MIR -8 200 107 2304 99 10 0 chr6 15087995 15088297 -174191257 - AluSp SINE Alu -6 307 3 248 306 0 0 chr6 15089448 15089510 -174190044 - MLT1I LTR MaLR -123 286 225 * 319 286 28 62 chr6 15089499 15089677 -174189877 - MLT1H LTR MaLR -281 268 97 2600 50 0 0 chr6 15090081 15090380 -174189174 - AluY SINE Alu -12 299 1 1851 158 66 34 chr6 15091163 15091512 -174188042 - MLT1A1 LTR MaLR -5 360 1 314 299 10 0 chr6 15092443 15092540 -174187014 + L1ME4a LINE L1 5955 6052 -69 734 267 98 7 chr6 15092541 15092826 -174186728 + MARNA DNA Mariner 261 571 -15 395 289 59 70 chr6 15093949 15094371 -174185183 - MLT1H LTR MaLR -2 565 46 190 259 0 17 chr6 15094813 15094871 -174184683 + MIR3 SINE MIR 142 198 -10 1112 105 0 20 chr6 15095146 15095299 -174184255 + AluSq/x SINE Alu 1 150 -162 282 56 0 0 chr6 15095299 15095335 -174184219 + (CA)n Simple_repeat Simple_repeat 1 36 0 191 285 8 98 chr6 15095654 15095777 -174183777 + L2 LINE L2 3202 3313 0 898 299 97 24 chr6 15097505 15098013 -174181541 - MLT1K LTR MaLR -18 570 26 243 274 0 24 chr6 15098029 15098106 -174181448 - L1MC4a LINE L1 -1631 6177 6101 2274 108 3 0 chr6 15098106 15098402 -174181152 + AluSq SINE Alu 1 297 -16 531 160 0 0 chr6 15098408 15098502 -174181052 + GA-rich Low_complexity Low_complexity 3 96 0 2003 44 0 48 chr6 15098644 15098895 -174180659 + AluY SINE Alu 54 292 -19 2452 254 51 37 chr6 15098903 15099452 -174180102 - L1MC4a LINE L1 -748 5398 5366 2272 108 0 13 chr6 15099452 15099768 -174179786 - AluSx SINE Alu 0 312 1 2452 254 51 37 chr6 15099768 15100403 -174179151 - L1MC4a LINE L1 -780 5366 4742 1778 149 22 0 chr6 15100445 15100713 -174178841 - AluJb SINE Alu -18 294 21 874 261 327 10 chr6 15100722 15101591 -174177963 - L2 LINE L2 -1592 1722 579 2207 105 7 26 chr6 15102500 15102806 -174176748 - AluSq SINE Alu -13 300 1 209 289 53 13 chr6 15104356 15104432 -174175122 + MIR SINE MIR 112 190 -72 529 254 133 38 chr6 15105537 15105777 -174173777 + Charlie8 DNA MER1_type 2 264 -2153 336 238 31 85 chr6 15106162 15106359 -174173195 - MLT1H LTR MaLR -200 349 131 4182 124 17 71 chr6 15106359 15106597 -174172957 + LTR62 LTR ERVK 1 250 -469 2359 109 0 0 chr6 15106597 15106909 -174172645 - AluSq SINE Alu -1 312 1 4182 124 17 71 chr6 15106909 15107430 -174172124 + LTR62 LTR ERVK 250 719 0 336 238 31 85 chr6 15107430 15107456 -174172098 - MLT1H LTR MaLR -418 131 105 1831 270 58 13 chr6 15107524 15108046 -174171508 + MER77 LTR ERV1 54 598 -7 726 280 109 25 chr6 15108190 15108558 -174170996 - L2 LINE L2 0 3313 2915 21 0 0 0 chr6 15108590 15108611 -174170943 + AT_rich Low_complexity Low_complexity 1 21 0 2080 139 30 0 chr6 15108614 15108916 -174170638 + AluSx SINE Alu 1 311 -1 210 71 0 0 chr6 15108916 15108944 -174170610 + (GAGAA)n Simple_repeat Simple_repeat 1 28 0 880 93 0 0 chr6 15110141 15110249 -174169305 + FLAM_C SINE Alu 1 108 -35 1413 281 101 65 chr6 15111201 15111835 -174167719 + L1ME4a LINE L1 59 746 -5373 1870 111 92 0 chr6 15111835 15112106 -174167448 + AluSq SINE Alu 3 298 -15 1413 281 101 65 chr6 15112106 15112515 -174167039 + L1ME4a LINE L1 746 1139 -4980 2414 81 3 13 chr6 15112612 15112922 -174166632 + AluSx SINE Alu 1 307 -5 403 301 135 17 chr6 15112939 15113228 -174166326 + HAL1 LINE L1 1433 1755 -752 2032 121 45 0 chr6 15113509 15113681 -174165873 - AluSx SINE Alu -7 305 113 198 0 0 0 chr6 15113681 15113703 -174165851 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2032 121 45 0 chr6 15113703 15113820 -174165734 - AluSx SINE Alu -199 113 3 368 255 216 33 chr6 15113909 15114145 -174165409 + L1ME4a LINE L1 2093 2284 -3845 2409 83 10 0 chr6 15114145 15114446 -174165108 + AluSg SINE Alu 1 304 -6 368 255 216 33 chr6 15114446 15114875 -174164679 + L1ME4a LINE L1 2284 2880 -3249 1299 277 88 34 chr6 15114930 15115262 -174164292 + L1ME4a LINE L1 4312 4625 -1504 1900 128 3 54 chr6 15115262 15115575 -174163979 - AluJb SINE Alu -15 297 1 1299 277 88 34 chr6 15115575 15116148 -174163406 + L1ME4a LINE L1 4625 5266 -863 898 134 8 0 chr6 15116289 15116416 -174163138 + FLAM_C SINE Alu 1 128 -5 1798 35 22 35 chr6 15116631 15116861 -174162693 + AluY SINE Alu 80 306 -5 252 193 137 13 chr6 15116972 15117067 -174162487 + L1M1 LINE L1 5476 5584 -561 649 241 145 68 chr6 15117081 15117508 -174162046 + L1ME4a LINE L1 5421 5880 -224 21 36 0 0 chr6 15117584 15117612 -174161942 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 15118109 15118130 -174161424 + GC_rich Low_complexity Low_complexity 1 21 0 340 147 11 32 chr6 15118130 15118225 -174161329 + G-rich Low_complexity Low_complexity 6 98 0 682 277 21 25 chr6 15119980 15120215 -174159339 - MIR SINE MIR -10 252 19 1789 164 0 24 chr6 15121759 15122046 -174157508 - AluJb SINE Alu -20 292 13 804 136 7 57 chr6 15122073 15122213 -174157341 + FLAM_C SINE Alu 1 133 0 2254 98 14 0 chr6 15122892 15123179 -174156375 - AluSp SINE Alu -22 291 1 266 149 0 21 chr6 15123337 15123384 -174156170 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 724 183 13 9 chr6 15123384 15123609 -174155945 + CT-rich Low_complexity Low_complexity 1 226 0 768 286 86 26 chr6 15123679 15124018 -174155536 - L3 LINE CR1 -695 882 524 449 330 44 76 chr6 15124926 15125635 -174153919 + L2 LINE L2 2217 2902 -412 21 0 0 0 chr6 15126184 15126205 -174153349 + AT_rich Low_complexity Low_complexity 1 21 0 390 151 0 0 chr6 15126328 15126401 -174153153 + CT-rich Low_complexity Low_complexity 2 74 0 463 211 37 9 chr6 15126648 15126757 -174152797 + MLT1F1 LTR MaLR 6 117 -450 1460 251 99 12 chr6 15126847 15127334 -174152220 - L1MC4a LINE L1 -1963 5845 5317 484 264 112 48 chr6 15127591 15127886 -174151668 - L1MC4a LINE L1 -1095 5051 4738 317 137 20 0 chr6 15127893 15127944 -174151610 + U7 snRNA snRNA 2 53 -10 1423 187 87 22 chr6 15127979 15128300 -174151254 - MER2 DNA MER2_type -2 342 1 963 26 0 0 chr6 15128474 15128588 -174150966 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1622 188 35 0 chr6 15128611 15128898 -174150656 - AluJo SINE Alu -15 297 1 488 258 0 39 chr6 15129224 15129352 -174150202 - L2 LINE L2 0 3313 3191 361 125 33 33 chr6 15129378 15129498 -174150056 + (TA)n Simple_repeat Simple_repeat 2 121 0 413 323 30 36 chr6 15129744 15129911 -174149643 + MLT1K LTR MaLR 252 417 -171 1461 135 107 21 chr6 15129955 15130236 -174149318 + MSTA LTR MaLR 1 305 -123 4890 149 18 32 chr6 15130240 15131236 -174148318 - MER11C LTR ERVK 0 1071 1 746 154 88 0 chr6 15131236 15131353 -174148201 + MSTA LTR MaLR 300 428 0 237 222 48 32 chr6 15131357 15131420 -174148134 + MLT1K LTR MaLR 465 528 -60 373 220 48 30 chr6 15132188 15132355 -174147199 + MER20B DNA MER1_type 1 172 -47 206 32 32 0 chr6 15132874 15132905 -174146649 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1677 111 7 117 chr6 15132909 15133216 -174146338 - AluSg SINE Alu -37 273 1 2222 84 42 0 chr6 15134888 15135172 -174144382 - AluSc SINE Alu -13 296 1 249 33 0 0 chr6 15135265 15135295 -174144259 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1932 164 50 24 chr6 15135840 15136219 -174143335 + MLT1B LTR MaLR 1 389 -1 2443 66 30 3 chr6 15137743 15138046 -174141508 + AluY SINE Alu 1 311 0 268 217 87 11 chr6 15138886 15138978 -174140576 - MER5C DNA MER1_type -8 316 218 305 260 58 19 chr6 15139007 15139111 -174140443 - MER5C DNA MER1_type -212 112 5 218 313 162 0 chr6 15139486 15139585 -174139969 - L2 LINE L2 0 3313 3199 541 205 0 31 chr6 15140537 15140664 -174138890 + L2 LINE L2 3190 3312 -1 1908 214 52 15 chr6 15141622 15142193 -174137361 + L1MB7 LINE L1 1431 2115 -4269 * 2345 200 97 35 chr6 15142192 15142871 -174136683 + L1MB7 LINE L1 3635 4355 -2027 3705 156 71 43 chr6 15142890 15143382 -174136172 + L1MB7 LINE L1 4849 5326 -1094 2277 105 16 0 chr6 15143382 15143687 -174135867 + AluSx SINE Alu 3 312 0 3705 156 71 43 chr6 15143687 15144641 -174134913 + L1MB7 LINE L1 5326 6323 -97 962 159 12 18 chr6 15144647 15144817 -174134737 + AluJo SINE Alu 121 289 -23 290 197 14 0 chr6 15144824 15144895 -174134659 + L1MB3 LINE L1 6111 6182 -1 530 208 162 12 chr6 15144996 15145169 -174134385 - ORSL DNA AcHobo -76 199 1 21 0 0 0 chr6 15145681 15145702 -174133852 + AT_rich Low_complexity Low_complexity 1 21 0 462 193 73 27 chr6 15146791 15146941 -174132613 + MIR3 SINE MIR 22 178 -30 1910 199 146 7 chr6 15147021 15147459 -174132095 + MLT1D LTR MaLR 7 505 0 377 304 25 12 chr6 15149979 15150140 -174129414 + MIR SINE MIR 65 227 -35 1626 123 119 12 chr6 15150259 15150549 -174129005 + AluSg SINE Alu 1 317 0 491 270 15 115 chr6 15151657 15151797 -174127757 - MIR SINE MIR 0 262 160 2101 136 3 0 chr6 15151797 15152092 -174127462 - AluSx SINE Alu -16 296 1 491 270 15 115 chr6 15152092 15152221 -174127333 - MIR SINE MIR -102 160 20 203 159 45 0 chr6 15152398 15152442 -174127112 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2273 118 0 0 chr6 15153642 15153948 -174125606 - AluSx SINE Alu -6 306 1 309 100 0 0 chr6 15154499 15154549 -174125005 + (TG)n Simple_repeat Simple_repeat 1 50 0 247 228 0 18 chr6 15155761 15155818 -174123736 - L2 LINE L2 0 3272 3217 1840 169 7 3 chr6 15156430 15156731 -174122823 - AluJo SINE Alu -10 302 1 1401 197 76 80 chr6 15156845 15157307 -174122247 + MLT1C LTR MaLR 8 467 0 369 300 22 39 chr6 15157309 15157489 -174122065 - MIR SINE MIR -76 186 10 1817 110 57 47 chr6 15158144 15158445 -174121109 - AluSx SINE Alu -8 304 1 420 181 12 0 chr6 15158457 15158540 -174121014 - MER5A DNA MER1_type -84 105 22 571 250 6 121 chr6 15158581 15158937 -174120617 - L1ME4a LINE L1 -225 5896 5582 761 181 0 0 chr6 15159545 15159672 -174119882 - FLAM_A SINE Alu -6 127 1 529 212 10 0 chr6 15160518 15160617 -174118937 - MER117 DNA MER1_type -97 100 1 182 170 213 0 chr6 15162686 15162733 -174116821 + L2 LINE L2 3235 3291 -22 388 244 119 28 chr6 15162790 15162966 -174116588 + MIR SINE MIR 68 259 -3 221 136 0 23 chr6 15163612 15163656 -174115898 + (TTC)n Simple_repeat Simple_repeat 2 44 0 279 231 215 92 chr6 15166619 15166814 -174112740 + MIR SINE MIR 12 230 -32 343 267 20 0 chr6 15167077 15167178 -174112376 - MIR SINE MIR -10 252 150 3984 153 24 13 chr6 15167179 15167877 -174111677 + MER50 LTR ERV1 1 706 -28 405 262 16 48 chr6 15167886 15168012 -174111542 - MIR SINE MIR -111 151 30 211 234 0 0 chr6 15168018 15168065 -174111489 + T-rich Low_complexity Low_complexity 1 47 0 200 306 47 35 chr6 15168109 15168194 -174111360 + L2 LINE L2 3222 3307 -6 242 291 26 58 chr6 15168512 15168669 -174110885 + MIR SINE MIR 16 165 -59 251 329 71 35 chr6 15168746 15168916 -174110638 - MLT1J2 LTR MaLR -13 437 262 341 206 28 65 chr6 15168966 15169073 -174110481 - MLT1J2 LTR MaLR -321 129 27 554 281 139 8 chr6 15170083 15170321 -174109233 + L2 LINE L2 3042 3310 -3 928 249 190 57 chr6 15171024 15171502 -174108052 + MLT1F LTR MaLR 1 542 0 2081 178 5 22 chr6 15171587 15171638 -174107916 - MLT1A1 LTR MaLR 0 365 315 2291 130 92 27 chr6 15171638 15172039 -174107515 + MSTA LTR MaLR 2 428 0 2081 178 5 22 chr6 15172039 15172357 -174107197 - MLT1A1 LTR MaLR -50 315 2 466 302 58 9 chr6 15172597 15172822 -174106732 - MLT1K LTR MaLR -15 573 338 306 264 25 33 chr6 15173090 15173211 -174106343 - MIR3 SINE MIR -80 128 9 261 281 53 26 chr6 15173250 15173364 -174106190 - MIR SINE MIR -19 243 127 582 229 0 0 chr6 15173675 15173917 -174105637 + (CA)n Simple_repeat Simple_repeat 1 242 0 257 274 129 23 chr6 15174711 15174884 -174104670 + MIR SINE MIR 12 206 -56 232 319 17 50 chr6 15176179 15176298 -174103256 - MIR3 SINE MIR -87 121 7 1896 112 81 0 chr6 15176624 15176909 -174102645 - AluSx SINE Alu -4 308 1 583 250 104 5 chr6 15177959 15178151 -174101403 + MIR SINE MIR 2 212 -50 227 318 24 24 chr6 15178201 15178286 -174101268 - MIR3 SINE MIR -45 163 79 287 146 0 0 chr6 15180249 15180297 -174099257 - MIR3 SINE MIR -48 160 113 232 172 78 16 chr6 15180694 15180758 -174098796 + L2 LINE L2 3236 3303 -10 2131 118 7 0 chr6 15180937 15181226 -174098328 + AluSq SINE Alu 1 291 -22 234 278 44 56 chr6 15181519 15181609 -174097945 + L3b LINE CR1 1407 1495 -88 221 128 21 0 chr6 15181739 15181786 -174097768 + GA-rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr6 15182603 15182645 -174096909 + GC_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr6 15182998 15183019 -174096535 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1611 184 29 0 chr6 15184491 15184768 -174094786 + MLT1A1 LTR MaLR 1 285 -80 482 239 18 0 chr6 15185112 15185221 -174094333 - MIR SINE MIR -106 156 46 795 272 76 23 chr6 15185437 15185779 -174093775 - MARNA DNA Mariner -166 420 61 1830 136 4 7 chr6 15185897 15186177 -174093377 - AluJb SINE Alu 0 312 34 280 206 118 0 chr6 15186898 15186966 -174092588 + MLT1L LTR MaLR 23 98 -517 916 225 37 0 chr6 15186999 15187190 -174092364 + MER58A DNA MER1_type 27 224 0 667 276 69 20 chr6 15187190 15187575 -174091979 + MLT1L LTR MaLR 148 597 -18 469 315 80 14 chr6 15187703 15187916 -174091638 - MIR SINE MIR -34 228 2 217 303 169 0 chr6 15187934 15188023 -174091531 + MIR SINE MIR 48 151 -111 2062 201 50 10 chr6 15190542 15190941 -174088613 - MLT1F LTR MaLR -4 538 124 648 269 85 15 chr6 15191255 15191456 -174088098 - MIR SINE MIR -21 241 27 326 231 15 0 chr6 15191640 15191705 -174087849 + LTR33 LTR ERVL 306 371 -150 662 144 152 8 chr6 15191708 15191838 -174087716 + MLT1D LTR MaLR 1 149 -356 1020 226 46 95 chr6 15191838 15192020 -174087534 - MER39 LTR ERV1 0 707 518 1842 134 48 3 chr6 15192020 15192312 -174087242 - AluSg SINE Alu -5 305 1 1020 226 46 95 chr6 15192312 15192659 -174086895 - MER39 LTR ERV1 -189 518 5 916 214 83 76 chr6 15192675 15192875 -174086679 + MLT1D LTR MaLR 166 370 -135 2279 110 0 3 chr6 15192875 15193184 -174086370 - AluSq SINE Alu -4 309 2 916 214 83 76 chr6 15193184 15193272 -174086282 + MLT1D LTR MaLR 370 456 -49 501 295 4 100 chr6 15195385 15195656 -174083898 + MIR SINE MIR 18 262 0 365 353 14 45 chr6 15196864 15197156 -174082398 - L2 LINE L2 -342 2972 2690 1135 270 42 15 chr6 15197661 15197994 -174081560 - MLT1I LTR MaLR -2 407 66 812 298 113 22 chr6 15198616 15199266 -174080288 + L2 LINE L2 2573 3311 -2 2142 106 0 13 chr6 15199711 15200012 -174079542 + AluSq SINE Alu 1 297 -16 220 306 0 0 chr6 15201009 15201071 -174078483 + MIR SINE MIR 190 251 -11 * 311 361 38 0 chr6 15201038 15201171 -174078383 - MIR SINE MIR -33 229 92 603 278 16 14 chr6 15201171 15201406 -174078148 - LTR33 LTR ERVL -2 519 278 283 221 0 29 chr6 15201717 15201821 -174077733 + CT-rich Low_complexity Low_complexity 4 104 0 317 293 54 54 chr6 15203232 15203379 -174076175 + MIR SINE MIR 36 147 -61 269 302 10 10 chr6 15203554 15203650 -174075904 - L2 LINE L2 -188 3084 2989 2533 84 0 0 chr6 15203909 15204220 -174075334 + AluSq SINE Alu 1 311 -2 1420 241 103 21 chr6 15204299 15204767 -174074787 + LTR33 LTR ERVL 7 512 -9 277 325 181 16 chr6 15204834 15205286 -174074268 - L2 LINE L2 -747 2567 2041 1017 178 70 37 chr6 15205914 15206171 -174073383 - L1MB2 LINE L1 0 6171 5907 513 221 0 0 chr6 15206175 15206279 -174073275 + Tigger7 DNA MER2_type 3 106 -599 730 127 0 51 chr6 15206290 15206408 -174073146 + FLAM_C SINE Alu 13 124 -19 562 269 0 0 chr6 15206411 15206530 -174073024 + Tigger7 DNA MER2_type 101 219 -486 563 140 35 53 chr6 15206531 15206563 -174072991 + Tigger7 DNA MER2_type 2476 2507 -80 2527 116 5 18 chr6 15206563 15206943 -174072611 + THE1C LTR MaLR 1 375 0 563 140 35 53 chr6 15206943 15207024 -174072530 + Tigger7 DNA MER2_type 2507 2587 0 508 200 42 58 chr6 15207024 15207144 -174072410 - L1MB3 LINE L1 -277 5906 5789 633 255 42 23 chr6 15208986 15209202 -174070352 + MIR SINE MIR 32 251 -11 413 284 148 6 chr6 15209273 15209442 -174070112 + MIR SINE MIR 51 243 -19 270 0 0 0 chr6 15209449 15209479 -174070075 + (TTA)n Simple_repeat Simple_repeat 3 32 0 207 0 0 0 chr6 15209604 15209627 -174069927 + (T)n Simple_repeat Simple_repeat 1 23 0 449 272 133 19 chr6 15210604 15210997 -174068557 + L1MC4a LINE L1 5176 5614 -507 307 284 99 67 chr6 15211010 15211323 -174068231 + L1MC4a LINE L1 5642 5964 -1844 351 60 0 0 chr6 15211426 15211476 -174068078 + (TG)n Simple_repeat Simple_repeat 1 50 0 1243 186 109 0 chr6 15212074 15212348 -174067206 + MER33 DNA MER1_type 1 304 -20 333 0 0 0 chr6 15213767 15213804 -174065750 + (CA)n Simple_repeat Simple_repeat 1 37 0 720 119 18 0 chr6 15214280 15214389 -174065165 - L1PA14 LINE L1 -522 5639 5529 3868 78 6 4 chr6 15214389 15214898 -174064656 + L1PA14 LINE L1 5642 6158 -3 348 288 51 0 chr6 15214941 15215059 -174064495 - MIR SINE MIR -29 233 110 262 180 82 16 chr6 15215069 15215130 -174064424 - MLT1I LTR MaLR -9 400 336 248 211 44 56 chr6 15215764 15215854 -174063700 - MIR SINE MIR -170 92 4 793 177 78 16 chr6 15216111 15216303 -174063251 - MER3 DNA MER1_type -4 205 2 2205 99 0 3 chr6 15216403 15216721 -174062833 + AluSg SINE Alu 1 317 0 391 161 49 37 chr6 15217479 15217560 -174061994 + MER103 DNA DNA 77 158 -8 4279 214 74 35 chr6 15218608 15219227 -174060327 + L1ME2 LINE L1 3915 4508 -1656 1835 159 0 7 chr6 15219227 15219510 -174060044 + AluJo SINE Alu 1 281 -31 4279 214 74 35 chr6 15219510 15221053 -174058501 + L1ME2 LINE L1 4508 6163 -1 372 285 64 29 chr6 15221321 15221493 -174058061 + MIR SINE MIR 14 191 -71 239 283 201 0 chr6 15222486 15222645 -174056909 + MIR SINE MIR 64 254 -8 2214 121 84 53 chr6 15222912 15223327 -174056227 - MSTA LTR MaLR 0 428 1 542 92 0 11 chr6 15223329 15223416 -174056138 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 2168 111 10 3 chr6 15225410 15225707 -174053847 - AluSx SINE Alu -13 299 1 2373 142 21 8 chr6 15225974 15226354 -174053200 - MER57A LTR ERV1 -18 385 1 2285 107 3 0 chr6 15226574 15226874 -174052680 + AluSx SINE Alu 1 301 -11 519 200 20 0 chr6 15226892 15226992 -174052562 + MIR3 SINE MIR 53 154 -54 4714 153 63 39 chr6 15227943 15228835 -174050719 - MER21A LTR ERV1 0 931 19 357 297 100 75 chr6 15228897 15228964 -174050590 - L3 LINE CR1 -1 1576 1512 601 174 92 76 chr6 15228964 15229028 -174050526 + MER5A DNA MER1_type 1 62 -127 2318 94 0 3 chr6 15229028 15229325 -174050229 + AluSg SINE Alu 15 310 0 601 174 92 76 chr6 15229325 15229444 -174050110 + MER5A DNA MER1_type 62 187 -2 357 297 100 75 chr6 15229444 15229615 -174049939 - L3 LINE CR1 -65 1512 1332 312 91 0 0 chr6 15230302 15230346 -174049208 + (GGA)n Simple_repeat Simple_repeat 1 44 0 216 254 232 43 chr6 15231723 15231861 -174047693 + MIR SINE MIR 20 183 -79 26 0 0 0 chr6 15231941 15231967 -174047587 + AT_rich Low_complexity Low_complexity 1 26 0 456 295 73 33 chr6 15232498 15232827 -174046727 + L1MCa LINE L1 1252 1593 -4833 * 586 286 79 10 chr6 15232824 15233114 -174046440 + L1MCa LINE L1 2801 3110 -3316 3014 279 76 48 chr6 15233262 15235703 -174043851 + L1MCa LINE L1 3408 5919 -531 975 207 38 114 chr6 15235856 15236110 -174043444 - MER39 LTR ERV1 -83 624 409 2527 93 0 0 chr6 15236110 15236423 -174043131 + AluSp SINE Alu 1 313 0 975 207 38 114 chr6 15236423 15236564 -174042990 - MER39 LTR ERV1 -298 409 259 852 260 73 74 chr6 15237067 15237544 -174042010 - MLT1L LTR MaLR 0 615 73 2091 110 32 0 chr6 15239017 15239299 -174040255 + AluSq SINE Alu 1 291 -22 466 138 11 23 chr6 15239322 15239409 -174040145 - L1MB8 LINE L1 0 6178 6093 551 218 21 21 chr6 15239421 15239563 -174039991 - L1MB4 LINE L1 -1 6179 6038 733 165 33 0 chr6 15239659 15239780 -174039774 + FLAM_C SINE Alu 2 126 -7 252 250 56 0 chr6 15239791 15239863 -174039691 - MER91A DNA MER1_type -92 104 29 1359 229 75 48 chr6 15240250 15240705 -174038849 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr6 15241472 15241501 -174038053 + AT_rich Low_complexity Low_complexity 1 29 0 549 228 85 76 chr6 15242116 15242327 -174037227 - MIR SINE MIR -3 259 47 180 0 0 0 chr6 15242829 15242849 -174036705 + (T)n Simple_repeat Simple_repeat 1 20 0 2314 159 62 154 chr6 15243319 15244116 -174035438 + LTR8A LTR ERV1 1 723 -4 205 314 71 0 chr6 15244414 15244484 -174035070 + L2 LINE L2 3146 3220 -52 198 333 109 29 chr6 15245332 15245506 -174034048 + L2 LINE L2 2397 2584 -730 1331 191 91 64 chr6 15245560 15245980 -174033574 - MER31B LTR ERV1 -29 437 7 283 219 27 55 chr6 15246207 15246280 -174033274 - L2 LINE L2 0 3313 3243 1120 265 98 14 chr6 15247345 15247783 -174031771 - LTR16C LTR ERVL 0 491 17 707 169 7 0 chr6 15248309 15248457 -174031097 + CT-rich Low_complexity Low_complexity 2 150 0 1023 256 157 34 chr6 15248863 15249551 -174030003 + L2 LINE L2 2542 3309 -4 186 265 0 0 chr6 15249912 15249980 -174029574 + GA-rich Low_complexity Low_complexity 4 71 0 212 141 28 70 chr6 15250594 15250607 -174028947 + A-rich Low_complexity Low_complexity 3 15 -55 1966 121 6 16 chr6 15250607 15250922 -174028632 + AluSx SINE Alu 1 312 0 212 141 28 70 chr6 15250922 15250979 -174028575 + A-rich Low_complexity Low_complexity 15 70 0 1664 168 43 45 chr6 15251523 15251898 -174027656 - MLT1A2 LTR MaLR 0 374 1 320 306 153 0 chr6 15253045 15253156 -174026398 + MIR3 SINE MIR 54 181 -27 189 0 0 0 chr6 15254727 15254748 -174024806 + (CA)n Simple_repeat Simple_repeat 2 22 0 405 0 0 0 chr6 15255048 15255093 -174024461 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 302 211 28 14 chr6 15255639 15255710 -174023844 + GA-rich Low_complexity Low_complexity 3 74 0 258 32 0 0 chr6 15255776 15255807 -174023747 + (TG)n Simple_repeat Simple_repeat 2 32 0 327 327 18 0 chr6 15255869 15255979 -174023575 + MER91A DNA MER1_type 60 171 -25 836 188 59 18 chr6 15256155 15256325 -174023229 + AluJo SINE Alu 120 296 -16 188 193 37 128 chr6 15257676 15257785 -174021769 - L2 LINE L2 -890 2424 2326 1170 213 67 59 chr6 15258319 15258690 -174020864 - MER21B LTR ERV1 -109 754 381 565 315 18 22 chr6 15258887 15259109 -174020445 - MER21B LTR ERV1 -483 380 160 * 713 274 28 29 chr6 15259092 15259400 -174020154 - MER21B LTR ERV1 -400 205 4 724 245 147 64 chr6 15259456 15259892 -174019662 + MLT1H LTR MaLR 78 549 0 330 277 118 73 chr6 15260306 15260620 -174018934 - MLT1J1 LTR MaLR -26 420 93 3027 61 3 13 chr6 15260731 15261122 -174018432 + L1PA6 LINE L1 5767 6153 -1 267 217 17 0 chr6 15262179 15262239 -174017315 + GA-rich Low_complexity Low_complexity 3 63 0 21 0 0 0 chr6 15262805 15262826 -174016728 + AT_rich Low_complexity Low_complexity 1 21 0 583 235 122 20 chr6 15263495 15263691 -174015863 + LTR33 LTR ERVL 1 216 -305 298 276 51 32 chr6 15263698 15263854 -174015700 + LTR33 LTR ERVL 363 521 0 2150 88 7 7 chr6 15263890 15264185 -174015369 - AluSg SINE Alu -15 295 1 449 264 66 8 chr6 15264186 15264307 -174015247 - MIR SINE MIR -19 243 116 180 254 32 32 chr6 15264305 15264368 -174015186 - MIR SINE MIR -37 225 163 * 276 77 0 0 chr6 15265300 15265339 -174014215 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 303 85 0 0 chr6 15265346 15265393 -174014161 + (CA)n Simple_repeat Simple_repeat 1 47 0 242 381 0 0 chr6 15265425 15265509 -174014045 + L2 LINE L2 3186 3269 -3 1881 145 16 3 chr6 15266089 15266393 -174013161 - L1M1 LINE L1 -6168 1397 1090 234 128 0 0 chr6 15267520 15267559 -174011995 + (CA)n Simple_repeat Simple_repeat 2 40 0 2106 116 0 0 chr6 15267944 15268238 -174011316 - AluSg SINE Alu -16 294 1 907 147 0 14 chr6 15268239 15268382 -174011172 - L1MC1 LINE L1 -9 6324 6184 3681 51 0 2 chr6 15268384 15268833 -174010721 - LTR7 LTR ERV1 -2 448 1 2612 74 45 13 chr6 15268833 15269213 -174010341 - HERVH LTR ERV1 0 7713 7322 1428 115 23 9 chr6 15269211 15269428 -174010126 - HERVH LTR ERV1 -1894 5819 5600 * 4504 136 1 1 chr6 15269429 15270091 -174009463 - HERVH LTR ERV1 -2564 5149 4488 3400 116 6 6 chr6 15270093 15270595 -174008959 - HERVH LTR ERV1 -3720 3993 3492 * 21095 80 61 43 chr6 15270585 15273818 -174005736 - HERVH LTR ERV1 -4423 3290 1 3724 40 7 2 chr6 15273818 15274266 -174005288 - LTR7 LTR ERV1 0 450 1 5829 156 21 4 chr6 15274266 15275452 -174004102 - L1MC1 LINE L1 -145 6188 4976 326 194 47 70 chr6 15275436 15275565 -174003989 - L1MC5 LINE L1 -30 7931 7806 * 290 315 139 9 chr6 15276069 15276177 -174003377 - MIR3 SINE MIR -6 202 81 2747 132 29 0 chr6 15279308 15279724 -173999830 + MSTA LTR MaLR 1 428 0 236 301 23 92 chr6 15279842 15280015 -173999539 - MER5B DNA MER1_type 0 178 18 236 254 0 56 chr6 15280232 15280303 -173999251 + L2 LINE L2 3243 3309 -4 277 333 82 22 chr6 15280399 15280582 -173998972 + MIR3 SINE MIR 5 198 -10 411 292 0 8 chr6 15282000 15282120 -173997434 + L2 LINE L2 3193 3311 -2 504 212 62 62 chr6 15283356 15283549 -173996005 - MLT1K LTR MaLR 0 588 396 431 327 22 63 chr6 15283624 15283893 -173995661 - MLT1K LTR MaLR -329 259 2 256 330 62 40 chr6 15285140 15285316 -173994238 - MIR SINE MIR -54 208 29 396 267 69 9 chr6 15285351 15285412 -173994142 - L2 LINE L2 0 3313 3257 441 0 0 0 chr6 15285412 15285461 -173994093 + (TA)n Simple_repeat Simple_repeat 2 50 0 396 267 69 9 chr6 15285461 15285515 -173994039 - L2 LINE L2 -56 3257 3191 249 247 104 26 chr6 15335892 15335969 -173943585 - MIR SINE MIR -94 114 32 2345 184 37 0 chr6 15336732 15337135 -173942419 - MER47B DNA MER2_type 0 418 1 229 355 0 0 chr6 15337805 15337881 -173941673 + L2 LINE L2 3186 3261 -11 190 308 62 77 chr6 15339095 15339225 -173940329 - L2 LINE L2 -10 3303 3176 2294 97 0 55 chr6 15339683 15340013 -173939541 - AluSx SINE Alu 0 312 1 303 259 155 17 chr6 15341099 15341215 -173938339 - L2 LINE L2 -3 3269 3138 2466 183 67 30 chr6 15341460 15341996 -173937558 + MER74A LTR ERVL 3 558 0 380 300 142 2 chr6 15343472 15343634 -173935920 - MIR SINE MIR -51 211 32 329 309 144 27 chr6 15343776 15344074 -173935480 + L1MC2 LINE L1 5265 5597 -567 1929 115 0 87 chr6 15344078 15344399 -173935155 - AluSx SINE Alu -19 293 1 424 287 39 17 chr6 15344721 15344902 -173934652 + LTR16A LTR ERVL 164 348 -102 332 239 45 60 chr6 15344968 15345102 -173934452 + Charlie7 DNA MER1_type 2478 2609 -3 2111 165 105 37 chr6 15345107 15345544 -173934010 + MLT1C LTR MaLR 1 467 0 262 290 110 25 chr6 15345563 15345763 -173933791 + L1MC2 LINE L1 5679 5895 -1913 2154 131 0 0 chr6 15345976 15346273 -173933281 + AluSg SINE Alu 1 297 -13 38 0 0 0 chr6 15346319 15346357 -173933197 + AT_rich Low_complexity Low_complexity 1 38 0 378 157 14 0 chr6 15346375 15346445 -173933109 + L1MC3 LINE L1 7524 7594 -191 976 161 75 5 chr6 15346445 15346631 -173932923 + L1MC2 LINE L1 6137 6335 -9 365 285 0 31 chr6 15346639 15346763 -173932791 - MER5A DNA MER1_type -32 146 30 279 307 117 0 chr6 15347403 15347517 -173932037 - L2 LINE L2 0 3272 3149 233 263 0 18 chr6 15348653 15348710 -173930844 - MER91A DNA MER1_type 0 196 141 225 262 59 45 chr6 15349269 15349423 -173930131 - MIR SINE MIR -80 182 27 302 325 107 37 chr6 15349696 15349939 -173929615 - MIR SINE MIR 0 262 3 377 261 115 32 chr6 15350055 15350212 -173929342 - MER112 DNA MER1_type -90 170 1 1493 223 14 28 chr6 15351023 15351435 -173928119 - MLT1A2 LTR MaLR -4 370 1 908 203 51 99 chr6 15353329 15353669 -173925885 - MLT1C LTR MaLR -1 466 168 1890 195 22 6 chr6 15353777 15354136 -173925418 - MLT1A1 LTR MaLR 0 365 1 434 253 18 15 chr6 15354429 15354569 -173924985 + MIR SINE MIR 17 143 -65 458 324 45 33 chr6 15355465 15355709 -173923845 - MIR SINE MIR -11 251 5 220 272 62 12 chr6 15355816 15355897 -173923657 - L2 LINE L2 -4 3268 3184 261 324 158 0 chr6 15356098 15356237 -173923317 + MIR3 SINE MIR 35 195 -13 204 40 0 0 chr6 15356741 15356766 -173922788 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 283 317 60 33 chr6 15356833 15357016 -173922538 - MIR SINE MIR -43 219 32 358 311 85 34 chr6 15357160 15357337 -173922217 - MER91A DNA MER1_type -3 193 8 7378 48 7 0 chr6 15357949 15359319 -173920235 - L1PA6 LINE L1 0 6154 4780 334 309 112 0 chr6 15359382 15359534 -173920020 - MIR SINE MIR -60 202 34 3158 164 6 8 chr6 15359643 15360167 -173919387 - LTR26B LTR ERV1 -8 523 1 201 224 0 0 chr6 15360921 15360979 -173918575 + CT-rich Low_complexity Low_complexity 1 58 0 1055 148 40 139 chr6 15361190 15361493 -173918061 + MER34B LTR ERV1 1 273 -292 1780 163 24 84 chr6 15361497 15361866 -173917688 + Tigger3(Golem) DNA MER2_type 2 3028 -1 1627 135 28 11 chr6 15361866 15362148 -173917406 + MER34B LTR ERV1 275 561 -4 224 321 155 0 chr6 15363408 15363595 -173915959 + MIR SINE MIR 47 262 0 250 316 171 0 chr6 15363639 15363756 -173915798 + L2 LINE L2 3136 3272 0 3160 149 25 39 chr6 15364733 15365150 -173914404 - MER34C LTR ERV1 -3 582 174 1625 171 12 50 chr6 15365150 15365471 -173914083 - AluJo SINE Alu -3 309 1 3160 149 25 39 chr6 15365471 15365643 -173913911 - MER34C LTR ERV1 -411 174 1 285 252 142 13 chr6 15365999 15366154 -173913400 + MIR SINE MIR 23 197 -65 1603 189 71 54 chr6 15366305 15366857 -173912697 + MER39 LTR ERV1 1 707 0 278 333 26 8 chr6 15366984 15367101 -173912453 + LTR67 LTR ERVL 432 550 -7 1394 201 61 75 chr6 15367109 15367632 -173911922 - MER39 LTR ERV1 -3 704 1 1721 153 134 0 chr6 15367786 15368093 -173911461 - MER7A DNA MER2_type 0 346 1 638 251 34 22 chr6 15368573 15368687 -173910867 + MER5A DNA MER1_type 9 127 -62 906 122 0 0 chr6 15368687 15368818 -173910736 + FLAM_C SINE Alu 2 132 -1 638 251 34 22 chr6 15368818 15368882 -173910672 + MER5A DNA MER1_type 127 189 0 4362 165 45 3 chr6 15370715 15371455 -173908099 - LTR39 LTR ERV1 -12 771 1 2418 169 61 33 chr6 15371839 15372361 -173907193 - MER34C LTR ERV1 -2 583 47 1918 107 0 30 chr6 15372432 15372695 -173906859 + AluSx SINE Alu 1 255 -57 422 176 44 14 chr6 15372715 15372881 -173906673 + LTR29 LTR ERV1 1 198 -424 1434 132 128 15 chr6 15372924 15373189 -173906365 + LTR29 LTR ERV1 305 599 -23 284 357 102 39 chr6 15373589 15373894 -173905660 - L2 LINE L2 -4 3268 2945 450 305 6 58 chr6 15374289 15374463 -173905091 - L2 LINE L2 -607 2707 2543 238 293 70 32 chr6 15374551 15374696 -173904858 + MIR3 SINE MIR 15 164 -62 282 301 78 10 chr6 15375093 15375196 -173904358 + MIR3 SINE MIR 71 180 -28 593 251 70 91 chr6 15375870 15376157 -173903397 + LTR16B LTR ERVL 24 304 -160 481 250 17 0 chr6 15376159 15376279 -173903275 + MLT2C1 LTR ERVL 1 122 -275 4411 158 4 4 chr6 15376280 15376989 -173902565 - MER50 LTR ERV1 -23 711 3 1497 177 45 4 chr6 15376993 15377259 -173902295 + MLT2C1 LTR ERVL 121 397 0 2110 107 3 27 chr6 15377263 15377563 -173901991 - AluSp SINE Alu -13 300 8 530 248 7 14 chr6 15377572 15377713 -173901841 + LTR16B LTR ERVL 302 441 -23 223 314 32 48 chr6 15378552 15378676 -173900878 - L2 LINE L2 0 3313 3192 1051 238 42 34 chr6 15379121 15379162 -173900392 - MLT2D LTR ERVL 0 414 375 414 0 0 0 chr6 15379162 15379208 -173900346 + (TG)n Simple_repeat Simple_repeat 1 46 0 252 0 0 0 chr6 15379207 15379235 -173900319 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1051 238 42 34 chr6 15379208 15379458 -173900096 - MLT2D LTR ERVL -39 375 148 1786 181 89 66 chr6 15379475 15379990 -173899564 + MER34C LTR ERV1 51 577 -8 873 84 28 21 chr6 15379996 15380139 -173899415 - MLT2C2 LTR ERVL -314 150 7 1553 168 178 50 chr6 15380415 15380892 -173898662 - MER34C LTR ERV1 -2 583 46 750 292 14 52 chr6 15380920 15381286 -173898268 - L1ME4a LINE L1 -226 5895 5544 24 0 0 0 chr6 15381482 15381506 -173898048 + AT_rich Low_complexity Low_complexity 1 24 0 2119 117 70 6 chr6 15381867 15382209 -173897345 - MER34C LTR ERV1 -185 400 37 207 143 0 0 chr6 15384717 15384752 -173894802 + MIR SINE MIR 195 229 -33 981 56 14 7 chr6 15385117 15385259 -173894295 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 3305 152 18 132 chr6 15385537 15386421 -173893133 - LTR39 LTR ERV1 0 783 1 476 214 141 81 chr6 15387848 15388096 -173891458 - LTR48B LTR ERV1 0 644 382 1174 66 0 7 chr6 15388114 15388265 -173891289 + AluY SINE Alu 158 307 -4 1012 169 159 53 chr6 15388316 15388636 -173890918 - MLT1A1 LTR MaLR -9 356 3 541 245 25 19 chr6 15388649 15388878 -173890676 - MER34 LTR ERV1 -371 273 1 1815 142 73 109 chr6 15389296 15389357 -173890197 - MER31B LTR ERV1 0 466 404 3694 81 28 14 chr6 15389357 15389863 -173889691 - LTR10D LTR ERV1 0 513 1 1815 142 73 109 chr6 15389863 15390280 -173889274 - MER31B LTR ERV1 -62 404 5 2295 89 7 0 chr6 15390280 15390572 -173888982 + AluY SINE Alu 1 294 -17 283 297 31 83 chr6 15390682 15390785 -173888769 - MIR3 SINE MIR -9 199 92 3738 184 49 36 chr6 15390785 15391557 -173887997 + LTR39 LTR ERV1 2 783 0 283 297 31 83 chr6 15391557 15391571 -173887983 - MIR3 SINE MIR -116 92 79 2836 180 12 108 chr6 15391571 15391739 -173887815 - LTR8 LTR ERV1 0 691 508 2301 111 0 6 chr6 15391739 15392054 -173887500 - AluSq SINE Alu 0 313 1 2836 180 12 108 chr6 15392054 15392650 -173886904 - LTR8 LTR ERV1 -183 508 1 283 297 31 83 chr6 15392650 15392723 -173886831 - MIR3 SINE MIR -129 79 18 243 256 128 53 chr6 15393967 15394100 -173885454 + MIR3 SINE MIR 11 153 -55 435 280 48 8 chr6 15394483 15394608 -173884946 + MIR SINE MIR 20 149 -113 1913 180 0 0 chr6 15394668 15394974 -173884580 - AluJo SINE Alu -4 308 3 200 313 83 0 chr6 15395396 15395492 -173884062 + MIR SINE MIR 146 249 -13 242 146 36 36 chr6 15395635 15395690 -173883864 + GA-rich Low_complexity Low_complexity 3 57 0 2249 170 113 18 chr6 15395931 15396196 -173883358 - MER101B LTR ERV1 -33 537 298 303 28 0 0 chr6 15396196 15396232 -173883322 + (TG)n Simple_repeat Simple_repeat 2 37 0 2249 170 113 18 chr6 15396232 15396455 -173883099 - MER101B LTR ERV1 -272 298 3 3060 151 80 16 chr6 15396667 15397435 -173882119 + MER21A LTR ERV1 1 931 0 358 316 79 19 chr6 15398155 15398370 -173881184 - L3b LINE CR1 -225 1358 1131 328 251 16 13 chr6 15398752 15398863 -173880691 + MIR3 SINE MIR 48 160 -48 1128 263 72 12 chr6 15400674 15400993 -173878561 - MER58B DNA MER1_type -3 338 1 247 238 90 82 chr6 15401041 15401163 -173878391 + L2 LINE L2 3150 3272 0 395 350 0 7 chr6 15401819 15401956 -173877598 - L2 LINE L2 0 3272 3137 320 325 58 0 chr6 15402836 15402956 -173876598 + MIR SINE MIR 81 207 -55 207 0 0 0 chr6 15404502 15404525 -173875029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 239 310 39 54 chr6 15404693 15404740 -173874814 - MIR SINE MIR -99 163 117 234 0 0 0 chr6 15404740 15404766 -173874788 + (TTG)n Simple_repeat Simple_repeat 3 28 0 2309 72 0 0 chr6 15404766 15405045 -173874509 - AluY SINE Alu -32 279 1 239 310 39 54 chr6 15405045 15405125 -173874429 - MIR SINE MIR -143 119 37 1857 201 74 22 chr6 15405376 15405820 -173873734 - MLT1C LTR MaLR 0 467 1 247 239 0 0 chr6 15406075 15406121 -173873433 + L2 LINE L2 3141 3186 -86 207 0 0 0 chr6 15406323 15406346 -173873208 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 317 71 0 0 chr6 15406490 15406532 -173873022 - 5S rRNA rRNA -79 42 1 1620 174 46 3 chr6 15406671 15406953 -173872601 - AluJo SINE Alu -14 298 5 274 194 0 82 chr6 15407077 15407175 -173872379 + L1MC4 LINE L1 6614 6703 -1339 199 307 29 66 chr6 15407375 15407512 -173872042 - MER5B DNA MER1_type -29 149 18 269 249 260 28 chr6 15408050 15408231 -173871323 - L2 LINE L2 -72 3241 3019 455 267 110 20 chr6 15408281 15408413 -173871141 - MIR3 SINE MIR -28 180 32 1854 100 97 7 chr6 15408413 15408682 -173870872 + AluSg SINE Alu 1 293 -17 455 267 110 20 chr6 15408682 15408695 -173870859 - MIR3 SINE MIR -176 32 22 200 64 0 106 chr6 15409046 15409093 -173870461 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 208 287 11 32 chr6 15409215 15409309 -173870245 + CT-rich Low_complexity Low_complexity 5 96 0 25 0 0 0 chr6 15410336 15410361 -173869193 + AT_rich Low_complexity Low_complexity 1 25 0 863 135 26 26 chr6 15411336 15411447 -173868107 + MER3 DNA MER1_type 9 119 -43 315 0 0 0 chr6 15411447 15411482 -173868072 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr6 15411481 15411504 -173868050 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 863 135 26 26 chr6 15411482 15411504 -173868050 + MER3 DNA MER1_type 119 140 -22 2524 81 3 0 chr6 15411504 15411814 -173867740 - AluSx SINE Alu -1 311 1 863 135 26 26 chr6 15411814 15411857 -173867697 + MER3 DNA MER1_type 139 164 -45 274 305 19 57 chr6 15412246 15412351 -173867203 + MER5A DNA MER1_type 62 167 -16 231 287 157 0 chr6 15412819 15412927 -173866627 - MIR SINE MIR -73 189 65 2383 231 33 29 chr6 15413194 15413887 -173865667 + L1MC4 LINE L1 7344 8039 -3 644 267 93 13 chr6 15413923 15414159 -173865395 - MIR SINE MIR 0 262 8 348 336 43 36 chr6 15414332 15414472 -173865082 + L2 LINE L2 3132 3272 0 407 290 186 16 chr6 15414482 15414734 -173864820 - L3 LINE CR1 -301 1276 982 2350 243 77 49 chr6 15414778 15415568 -173863986 + HAL1 LINE L1 1 812 -1695 1800 171 96 0 chr6 15415584 15415953 -173863601 - L1MB4 LINE L1 0 6180 5776 207 0 0 0 chr6 15416156 15416179 -173863375 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1678 148 25 14 chr6 15416182 15416460 -173863094 - AluSx SINE Alu -31 281 1 1013 156 6 17 chr6 15416491 15416664 -173862890 + FRAM SINE Alu 1 171 -5 305 263 79 0 chr6 15417072 15417148 -173862406 - L2 LINE L2 -1 3271 3190 1923 143 65 25 chr6 15417854 15418210 -173861344 + THE1C LTR MaLR 6 375 0 273 318 64 18 chr6 15419001 15419111 -173860443 + L2 LINE L2 3158 3272 0 224 276 41 51 chr6 15419634 15419732 -173859822 + L2 LINE L2 3189 3285 -28 1692 179 7 0 chr6 15419754 15420033 -173859521 - AluJb SINE Alu -31 281 1 1020 215 106 7 chr6 15420064 15420348 -173859206 - L1M4 LINE L1 -1413 4733 4422 830 219 24 0 chr6 15420392 15420561 -173858993 + MSTD LTR MaLR 1 173 -223 380 310 42 38 chr6 15420569 15420782 -173858772 - L1M4 LINE L1 -1873 4273 4060 544 200 82 0 chr6 15420790 15420925 -173858629 - L1M4 LINE L1 -2157 3989 3844 970 188 0 0 chr6 15420926 15421086 -173858468 - AluSg/x SINE Alu -14 298 139 2985 251 21 20 chr6 15421092 15421324 -173858230 - L1M4 LINE L1 -2303 3843 3613 2119 103 0 7 chr6 15421324 15421649 -173857905 + AluSg SINE Alu 1 323 0 2985 251 21 20 chr6 15421649 15422352 -173857202 - L1M4 LINE L1 -2533 3613 2905 886 229 22 6 chr6 15422671 15422850 -173856704 - MER5A DNA MER1_type -6 183 2 778 194 8 0 chr6 15423416 15423545 -173856009 + FLAM_A SINE Alu 3 132 -1 2208 94 23 10 chr6 15424735 15425043 -173854511 + AluSx SINE Alu 1 312 0 24 0 0 0 chr6 15426113 15426137 -173853417 + AT_rich Low_complexity Low_complexity 1 24 0 3521 157 5 11 chr6 15426138 15426712 -173852842 - L1PB4 LINE L1 -2 6154 5584 360 43 0 0 chr6 15426973 15427019 -173852535 + (CA)n Simple_repeat Simple_repeat 2 47 0 192 125 0 0 chr6 15427744 15427776 -173851778 + (T)n Simple_repeat Simple_repeat 1 32 0 2128 137 0 0 chr6 15427851 15428158 -173851396 + AluSx SINE Alu 1 307 -5 1450 209 43 55 chr6 15429448 15429793 -173849761 + MER58B DNA MER1_type 1 341 0 23 86 0 0 chr6 15429929 15429987 -173849567 + AT_rich Low_complexity Low_complexity 1 58 0 823 74 56 0 chr6 15430043 15430151 -173849403 + AluSc SINE Alu 1 114 -195 2069 260 87 33 chr6 15430154 15430727 -173848827 - HERV16 LTR ERVL -2669 2327 1706 2634 132 3 6 chr6 15430727 15431092 -173848462 + THE1B LTR MaLR 1 364 0 2069 260 87 33 chr6 15431092 15431240 -173848314 - HERV16 LTR ERVL -3290 1706 1567 3404 306 43 28 chr6 15431302 15432658 -173846896 - HERV16 LTR ERVL -3581 1415 39 1746 211 64 10 chr6 15432677 15433084 -173846470 - L1MB2 LINE L1 -2 6169 5741 268 331 92 11 chr6 15433171 15433455 -173846099 - LTR16A LTR ERVL -84 366 60 5263 87 10 9 chr6 15433586 15434267 -173845287 - L1PA11 LINE L1 -1 6173 5492 236 299 0 124 chr6 15435768 15435905 -173843649 - L3 LINE CR1 -65 1512 1393 2246 103 3 3 chr6 15436131 15436432 -173843122 - AluSg SINE Alu -9 301 1 446 257 47 29 chr6 15437207 15437387 -173842167 + L1ME LINE L1 5579 5750 -371 1502 81 0 0 chr6 15437432 15437618 -173841936 + L1PA8 LINE L1 5979 6164 -8 365 183 0 0 chr6 15437909 15437969 -173841585 - MIR3 SINE MIR -42 166 107 303 326 133 0 chr6 15439795 15439976 -173839578 - MIR SINE MIR -13 249 45 491 287 41 83 chr6 15440660 15440971 -173838583 + Charlie8 DNA MER1_type 38 323 -2094 2122 131 3 0 chr6 15440971 15441268 -173838286 + AluSx SINE Alu 1 298 -14 491 287 41 83 chr6 15441268 15441440 -173838114 + Charlie8 DNA MER1_type 323 501 -1916 242 140 140 0 chr6 15441591 15441648 -173837906 - MER5A DNA MER1_type -115 74 10 1097 221 0 35 chr6 15441649 15441880 -173837674 - MER58A DNA MER1_type 0 224 2 3591 111 38 30 chr6 15441886 15442411 -173837143 + MER1A DNA MER1_type 1 529 0 350 279 116 52 chr6 15442460 15442693 -173836861 - LTR16C LTR ERVL 0 491 244 352 259 80 9 chr6 15443204 15443316 -173836238 - MIR SINE MIR -59 203 84 1802 168 0 19 chr6 15443320 15443630 -173835924 - AluJb SINE Alu -8 304 1 363 44 0 0 chr6 15443771 15443816 -173835738 + (TTCTCC)n Simple_repeat Simple_repeat 5 49 0 2086 120 7 0 chr6 15443817 15444100 -173835454 - AluSp SINE Alu -28 285 1 369 240 0 0 chr6 15445120 15445195 -173834359 + MIR SINE MIR 63 137 -71 381 247 10 21 chr6 15445196 15445293 -173834261 + Charlie7 DNA MER1_type 1 96 -2516 * 403 237 53 24 chr6 15445279 15445448 -173834106 + Charlie7 DNA MER1_type 2439 2612 0 281 372 36 29 chr6 15446565 15446702 -173832852 + L2 LINE L2 3134 3271 -1 339 276 74 36 chr6 15446846 15447121 -173832433 + L1MC/D LINE L1 5247 5533 -631 909 200 24 6 chr6 15447216 15447386 -173832168 + MER105 DNA DNA 1 173 -31 528 213 0 0 chr6 15447384 15447478 -173832076 - Tigger7 DNA MER2_type -611 94 1 * 43 92 0 0 chr6 15447478 15447598 -173831956 + AT_rich Low_complexity Low_complexity 1 120 0 500 281 133 3 chr6 15448050 15448261 -173831293 + L1MC/D LINE L1 5572 5815 -345 * 676 252 72 43 chr6 15448245 15448468 -173831086 + MIR SINE MIR 8 236 -26 1565 109 41 5 chr6 15448593 15448814 -173830740 + MER30 DNA MER1_type 2 230 0 279 287 64 75 chr6 15449035 15449223 -173830331 + MIR SINE MIR 18 203 -59 * 782 216 52 39 chr6 15449222 15449300 -173830254 - MIR SINE MIR -26 236 160 1868 224 42 11 chr6 15449300 15449750 -173829804 + MLT1C LTR MaLR 4 467 0 782 216 52 39 chr6 15449750 15449902 -173829652 - MIR SINE MIR -102 160 3 270 0 0 0 chr6 15450494 15450524 -173829030 + (TC)n Simple_repeat Simple_repeat 1 30 0 525 281 36 10 chr6 15451253 15451445 -173828109 - MIR SINE MIR -13 249 53 1222 204 0 9 chr6 15451772 15451993 -173827561 + MER20 DNA MER1_type 1 219 0 336 313 38 0 chr6 15452458 15452589 -173826965 + MIR SINE MIR 106 241 -21 212 349 45 15 chr6 15452827 15452959 -173826595 + MIR SINE MIR 56 191 -71 189 147 0 0 chr6 15452959 15452993 -173826561 + (ATG)n Simple_repeat Simple_repeat 2 35 0 238 206 55 27 chr6 15454262 15454335 -173825219 + L2 LINE L2 3197 3271 -1 2247 129 7 45 chr6 15455693 15456096 -173823458 - MLT1B LTR MaLR -2 388 1 536 170 104 22 chr6 15457615 15457750 -173821804 - MLT1H LTR MaLR -8 541 396 562 237 175 65 chr6 15458813 15459214 -173820340 - MLT1H LTR MaLR -9 540 96 1468 207 70 6 chr6 15459732 15460075 -173819479 + MLT1A1 LTR MaLR 1 365 0 1009 196 28 0 chr6 15460195 15460374 -173819180 - MER20 DNA MER1_type 0 219 36 775 312 87 25 chr6 15461110 15461626 -173817928 + L1MC4a LINE L1 5386 5933 -1875 270 0 0 0 chr6 15461781 15461811 -173817743 + (T)n Simple_repeat Simple_repeat 1 30 0 2048 104 0 4 chr6 15463638 15463907 -173815647 - AluSx SINE Alu -10 302 35 567 219 116 30 chr6 15464013 15464177 -173815377 + MER45A DNA AcHobo 1 178 0 180 0 0 0 chr6 15464233 15464253 -173815301 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1868 144 4 7 chr6 15464255 15464532 -173815022 - AluJb SINE Alu -20 292 17 28 0 0 0 chr6 15464567 15464595 -173814959 + AT_rich Low_complexity Low_complexity 1 28 0 2157 102 3 3 chr6 15465292 15465575 -173813979 + AluSq SINE Alu 14 296 -17 1253 244 44 60 chr6 15465600 15466121 -173813433 - HAL1 LINE L1 0 2507 1995 1389 214 126 10 chr6 15466157 15466563 -173812991 - HAL1 LINE L1 -589 1918 1466 603 273 34 61 chr6 15466565 15466697 -173812857 - L1MDa LINE L1 -2605 3935 3801 2364 74 20 3 chr6 15466697 15466995 -173812559 - AluSg SINE Alu -7 303 1 603 273 34 61 chr6 15466995 15467159 -173812395 - L1MDa LINE L1 -2739 3801 3647 770 81 9 0 chr6 15467161 15467180 -173812374 + (TTCCC)n Simple_repeat Simple_repeat 1 131 0 770 81 9 0 chr6 15467180 15467291 -173812263 + (TTCCC)n Simple_repeat Simple_repeat 5 116 0 2088 144 0 7 chr6 15467350 15467656 -173811898 - AluSx SINE Alu -8 304 1 4079 207 55 7 chr6 15467663 15468761 -173810793 - L1MDa LINE L1 -2848 3692 2543 2096 270 69 4 chr6 15468756 15469305 -173810249 - L1MDa LINE L1 -5901 639 55 * 390 265 90 41 chr6 15469320 15469565 -173809989 - L2 LINE L2 -854 2460 2204 255 257 157 81 chr6 15469591 15469852 -173809702 - HAL1 LINE L1 -2219 288 8 1064 142 7 0 chr6 15470137 15470292 -173809262 + FRAM SINE Alu 1 154 -22 1583 147 29 111 chr6 15470302 15470682 -173808872 + MLT1B LTR MaLR 33 381 -9 2896 13 0 0 chr6 15471676 15471985 -173807569 + AluYb8 SINE Alu 1 309 -9 2332 193 80 12 chr6 15472449 15472894 -173806660 + MLT2B1 LTR ERVL 1 483 -37 222 37 0 0 chr6 15472894 15472921 -173806633 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2332 193 80 12 chr6 15472921 15472962 -173806592 + MLT2B1 LTR ERVL 483 520 0 1989 105 7 17 chr6 15473553 15473849 -173805705 - AluSc SINE Alu 0 309 17 1170 180 86 23 chr6 15473870 15474126 -173805428 - MLT1B LTR MaLR -117 273 2 226 365 47 7 chr6 15474518 15474666 -173804888 - MIR SINE MIR -108 154 1 1279 203 8 23 chr6 15474708 15474974 -173804580 + MLT2B1 LTR ERVL 1 262 -258 314 133 0 0 chr6 15474978 15475023 -173804531 + MLT2B1 LTR ERVL 415 459 -61 2625 181 22 52 chr6 15475244 15475561 -173803993 + MER44D DNA MER2_type 14 363 -2124 1746 161 11 7 chr6 15475561 15475846 -173803708 + AluJo SINE Alu 1 286 -26 2625 181 22 52 chr6 15475846 15476082 -173803472 + MER44D DNA MER2_type 363 605 0 2640 44 0 0 chr6 15476143 15476440 -173803114 + AluY SINE Alu 1 297 -14 311 237 103 0 chr6 15480471 15480568 -173798986 - MIR SINE MIR -40 222 116 683 106 0 29 chr6 15480823 15480927 -173798627 + AluSg SINE Alu 2 102 -208 180 0 0 0 chr6 15482110 15482130 -173797424 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 218 102 20 chr6 15482333 15482834 -173796720 + MLT1F LTR MaLR 1 542 0 1705 167 12 86 chr6 15486667 15487086 -173792468 - MLT1B LTR MaLR 0 390 3 1359 194 37 23 chr6 15487810 15488109 -173791445 - AluJo SINE Alu -3 309 7 296 250 170 0 chr6 15488370 15488470 -173791084 - L2 LINE L2 0 3313 3197 267 324 113 11 chr6 15488581 15488766 -173790788 - L2 LINE L2 -559 2755 2552 1080 187 35 5 chr6 15489127 15489330 -173790224 - MER3 DNA MER1_type 0 209 1 670 177 8 0 chr6 15490463 15490587 -173788967 + MIR SINE MIR 32 156 -106 3851 111 4 93 chr6 15490666 15490802 -173788752 - MER39B LTR ERV1 -28 625 478 2326 75 0 7 chr6 15490802 15491096 -173788458 - AluSc SINE Alu -17 292 1 3851 111 4 93 chr6 15491096 15491578 -173787976 - MER39B LTR ERV1 -175 478 71 2100 113 31 0 chr6 15491578 15491870 -173787684 - AluSx SINE Alu -11 301 1 3851 111 4 93 chr6 15491870 15491936 -173787618 - MER39B LTR ERV1 -582 71 1 581 260 80 92 chr6 15492000 15492250 -173787304 + MIR SINE MIR 1 247 -15 240 35 0 0 chr6 15492262 15492291 -173787263 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1959 176 39 53 chr6 15492796 15493263 -173786291 + MER88 LTR ERVL 5 464 0 1931 131 3 33 chr6 15495058 15495363 -173784191 - AluSx SINE Alu -16 296 1 418 215 43 0 chr6 15496157 15496250 -173783304 + MIR SINE MIR 45 141 -67 1982 143 0 22 chr6 15496291 15496606 -173782948 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr6 15496990 15497011 -173782543 + AT_rich Low_complexity Low_complexity 1 21 0 801 31 0 0 chr6 15497049 15497145 -173782409 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 2012 97 15 4 chr6 15497179 15497447 -173782107 - AluY SINE Alu -19 292 22 277 290 93 9 chr6 15497741 15497848 -173781706 + MIR SINE MIR 32 147 -115 216 0 0 0 chr6 15497853 15497877 -173781677 + (A)n Simple_repeat Simple_repeat 1 24 0 3534 242 150 22 chr6 15498212 15499535 -173780019 + L1MEc LINE L1 12 1503 -4893 1923 145 0 7 chr6 15499562 15499852 -173779702 + AluSx SINE Alu 18 305 -7 3868 263 103 28 chr6 15499853 15501483 -173778071 + L1M4 LINE L1 2965 4742 -1404 2206 116 7 0 chr6 15501483 15501793 -173777761 + AluSx SINE Alu 1 312 0 3868 263 103 28 chr6 15501793 15501947 -173777607 + L1M4 LINE L1 4742 4883 -1263 319 260 0 0 chr6 15501962 15502039 -173777515 + L1ME3A LINE L1 6027 6103 -67 637 286 15 10 chr6 15502509 15502708 -173776846 - MIR SINE MIR -3 259 60 3721 146 29 0 chr6 15502735 15503319 -173776235 - LTR26 LTR ERV1 -2 601 1 477 0 0 0 chr6 15503680 15503733 -173775821 + (CA)n Simple_repeat Simple_repeat 2 54 0 253 238 150 20 chr6 15504170 15504317 -173775237 - L1ME4a LINE L1 -12 6109 5944 3848 160 54 28 chr6 15504562 15504594 -173774960 - L1MB4 LINE L1 -16 6164 6134 2090 149 7 0 chr6 15504594 15504903 -173774651 - AluJb SINE Alu -1 311 1 3848 160 54 28 chr6 15504903 15505584 -173773970 - L1MB4 LINE L1 -46 6134 5143 553 308 27 48 chr6 15505584 15505918 -173773636 - L1ME4a LINE L1 -227 5894 5381 909 165 74 0 chr6 15506621 15506797 -173772757 - MER5A DNA MER1_type 0 189 1 7115 184 39 98 chr6 15506943 15508809 -173770745 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr6 15509560 15509584 -173769970 + AT_rich Low_complexity Low_complexity 1 24 0 45294 33 1 3 chr6 15509584 15515731 -173763823 - L1PA3 LINE L1 0 6155 22 295 231 85 50 chr6 15515853 15515992 -173763562 + LTR45 LTR ERV1 390 783 0 324 201 103 121 chr6 15516045 15516219 -173763335 + MLT1H LTR MaLR 130 300 -249 245 360 44 0 chr6 15517667 15517781 -173761773 - L2 LINE L2 -5 3308 3190 272 294 42 0 chr6 15517864 15517983 -173761571 + MIR SINE MIR 41 164 -98 1148 173 28 14 chr6 15519208 15519422 -173760132 - MER58A DNA MER1_type -2 222 6 303 335 32 32 chr6 15519791 15519949 -173759605 - HAL1 LINE L1 -1241 1266 1109 613 228 0 0 chr6 15519999 15520134 -173759420 - FLAM_A SINE Alu 0 137 3 602 228 117 6 chr6 15520170 15520332 -173759222 + MIR SINE MIR 13 192 -70 2388 95 0 0 chr6 15521397 15521691 -173757863 + AluSg SINE Alu 1 294 -16 312 171 134 12 chr6 15521760 15521842 -173757712 - L1ME3A LINE L1 0 6170 6079 217 281 122 0 chr6 15521935 15522017 -173757537 - L3 LINE CR1 -200 1377 1286 606 189 117 0 chr6 15522058 15522169 -173757385 + FLAM_A SINE Alu 1 124 -9 207 0 0 0 chr6 15522171 15522194 -173757360 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 213 200 0 0 chr6 15523095 15523129 -173756425 + CT-rich Low_complexity Low_complexity 1 35 0 2506 124 8 3 chr6 15523129 15523491 -173756063 - THE1B LTR MaLR 0 364 1 2451 181 24 33 chr6 15523920 15524411 -173755143 - MER110 LTR ERV1 -4 487 1 2833 165 16 42 chr6 15524988 15525504 -173754050 - MER89 LTR ERV1 0 559 58 2298 117 3 0 chr6 15525504 15525802 -173753752 - AluSp SINE Alu -14 299 1 2833 165 16 42 chr6 15525802 15525855 -173753699 - MER89 LTR ERV1 -501 58 5 5516 167 12 3 chr6 15526207 15527100 -173752454 + MER54A LTR ERVL 1 901 0 309 242 30 20 chr6 15528127 15528226 -173751328 + GA-rich Low_complexity Low_complexity 6 105 0 194 209 0 0 chr6 15528297 15528340 -173751214 + L2 LINE L2 3270 3312 -1 2776 124 29 9 chr6 15528622 15529042 -173750512 + MSTA LTR MaLR 1 428 0 534 346 75 16 chr6 15529179 15529563 -173749991 + L2 LINE L2 2552 2958 -356 578 279 5 30 chr6 15529748 15529945 -173749609 - LTR33 LTR ERVL -3 518 327 421 283 27 59 chr6 15530000 15530151 -173749403 - LTR33 LTR ERVL -319 202 57 1472 214 65 89 chr6 15530151 15530703 -173748851 - MER34 LTR ERV1 0 542 4 421 283 27 59 chr6 15530703 15530738 -173748816 - LTR33 LTR ERVL -464 57 22 328 326 20 0 chr6 15530970 15531068 -173748486 - MIR3 SINE MIR -18 190 91 255 125 0 0 chr6 15531609 15531649 -173747905 + (CTG)n Simple_repeat Simple_repeat 1 40 0 204 376 83 0 chr6 15531745 15531854 -173747700 + L2 LINE L2 3111 3228 -44 213 65 0 0 chr6 15531876 15531907 -173747647 + (A)n Simple_repeat Simple_repeat 1 31 0 2561 68 0 3 chr6 15531952 15532261 -173747293 - AluY SINE Alu -3 308 1 362 287 33 16 chr6 15532433 15532555 -173746999 + MIR3 SINE MIR 70 193 -15 207 100 0 0 chr6 15532762 15532792 -173746762 + (A)n Simple_repeat Simple_repeat 1 30 0 472 317 12 30 chr6 15533393 15533557 -173745997 - MLT1J2 LTR MaLR 0 450 290 1184 182 47 130 chr6 15533557 15533942 -173745612 + MLT1A1 LTR MaLR 1 353 -12 234 216 20 0 chr6 15533949 15534000 -173745554 - MLT1J2 LTR MaLR -154 296 245 362 306 28 28 chr6 15534753 15534897 -173744657 - MIR3 SINE MIR -55 153 10 2058 145 134 8 chr6 15535110 15535490 -173744064 - MSTA LTR MaLR 0 428 1 2878 252 98 24 chr6 15535546 15536149 -173743405 + L1ME3A LINE L1 4385 4942 -1228 1033 201 121 0 chr6 15536149 15536348 -173743206 - MER58A DNA MER1_type -1 223 1 2878 252 98 24 chr6 15536348 15537422 -173742132 + L1ME3A LINE L1 4942 6165 -5 269 348 28 7 chr6 15538288 15538429 -173741125 + MIR SINE MIR 20 163 -99 225 94 0 0 chr6 15538446 15538478 -173741076 + (GGA)n Simple_repeat Simple_repeat 2 33 0 821 275 4 26 chr6 15538493 15538726 -173740828 - MIR SINE MIR -21 241 14 232 139 0 0 chr6 15540903 15540939 -173738615 - LTR16A1 LTR ERVL 0 457 422 1533 187 35 74 chr6 15541373 15541779 -173737775 + MLT1B LTR MaLR 1 390 0 1765 161 10 24 chr6 15543513 15543804 -173735750 + AluJo SINE Alu 1 287 -25 188 215 112 65 chr6 15544563 15544670 -173734884 + MIR SINE MIR 35 146 -62 1470 168 80 8 chr6 15546334 15546596 -173732958 + AluJb SINE Alu 7 287 -25 309 26 0 0 chr6 15546597 15546635 -173732919 + (CA)n Simple_repeat Simple_repeat 2 39 0 474 18 0 0 chr6 15546635 15546690 -173732864 + (TA)n Simple_repeat Simple_repeat 1 55 0 191 330 33 11 chr6 15546729 15546820 -173732734 - L2 LINE L2 0 3272 3180 651 152 0 0 chr6 15546835 15546947 -173732607 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 848 215 130 93 chr6 15547059 15547598 -173731956 - MER34B LTR ERV1 -4 561 3 764 217 0 12 chr6 15547915 15548081 -173731473 + MLT2C2 LTR ERVL 1 164 -300 1978 202 33 3 chr6 15548082 15548449 -173731105 + MLT1C-int LTR MaLR 966 1343 -28 2128 161 75 47 chr6 15548464 15548657 -173730897 + MLT1C LTR MaLR 1 187 -280 2154 138 0 6 chr6 15548657 15548968 -173730586 + AluSx SINE Alu 1 309 -3 2128 161 75 47 chr6 15548968 15549226 -173730328 + MLT1C LTR MaLR 187 465 -2 358 319 23 24 chr6 15549787 15549929 -173729625 + MIR SINE MIR 34 175 -60 502 292 12 6 chr6 15550131 15550299 -173729255 - MER69A DNA AcHobo 0 177 9 1228 218 80 33 chr6 15550700 15551159 -173728395 + MER39 LTR ERV1 1 701 -6 1251 176 110 33 chr6 15551295 15551596 -173727958 - MER46C DNA MER2_type -1 337 14 279 187 67 27 chr6 15552237 15552312 -173727242 - LTR48 LTR ERV1 -37 750 673 1507 160 100 21 chr6 15552361 15552692 -173726862 - MER46B DNA MER2_type 0 236 5 312 190 20 10 chr6 15552958 15553058 -173726496 + (TA)n Simple_repeat Simple_repeat 1 101 0 180 0 0 0 chr6 15554851 15554871 -173724683 + (A)n Simple_repeat Simple_repeat 1 20 0 1754 153 69 53 chr6 15555654 15556033 -173723521 + MLT1B LTR MaLR 6 390 0 2290 187 118 14 chr6 15556056 15556563 -173722991 + MER90 LTR ERV1 3 562 -13 30947 169 34 9 chr6 15557012 15561164 -173718390 - ERVL LTR ERVL -338 5426 1382 2434 164 31 2 chr6 15561164 15561580 -173717974 - MSTB1 LTR MaLR -4 428 1 30947 169 34 9 chr6 15561580 15562685 -173716869 - ERVL LTR ERVL -4382 1382 31 1754 173 0 37 chr6 15562685 15563009 -173716545 - AluJb SINE Alu 0 312 1 30947 169 34 9 chr6 15563009 15563029 -173716525 - ERVL LTR ERVL -5733 31 13 483 162 67 0 chr6 15563049 15563154 -173716400 + L1MB4 LINE L1 6069 6180 0 222 37 0 0 chr6 15564501 15564528 -173715026 + (GA)n Simple_repeat Simple_repeat 1 27 0 1955 111 0 25 chr6 15564528 15564671 -173714883 - AluSx SINE Alu -39 273 139 2069 113 20 10 chr6 15564671 15564971 -173714583 - AluSx SINE Alu -9 303 1 1955 111 0 25 chr6 15564971 15565107 -173714447 - AluSx SINE Alu -173 139 1 2380 189 43 15 chr6 15565223 15565756 -173713798 - L1MB5 LINE L1 0 6174 5627 853 287 42 48 chr6 15566093 15566427 -173713127 + LTR16C LTR ERVL 58 389 -102 2243 141 17 0 chr6 15566497 15566859 -173712695 + MLT1B LTR MaLR 23 390 0 437 132 15 0 chr6 15566859 15566927 -173712627 + LTR16C LTR ERVL 421 489 -2 248 188 188 0 chr6 15566946 15567031 -173712523 - L1M4 LINE L1 -3097 3049 2949 309 258 67 8 chr6 15567158 15567278 -173712276 - MLT1I LTR MaLR -227 182 56 543 289 77 38 chr6 15567290 15567577 -173711977 - L1ME LINE L1 -462 5700 5403 1734 103 25 0 chr6 15567589 15567831 -173711723 - AluSc SINE Alu -3 306 59 388 237 53 24 chr6 15667906 15668075 -173611479 - Charlie7 DNA MER1_type 0 2612 2439 379 247 10 21 chr6 15668061 15668158 -173611396 - Charlie7 DNA MER1_type -2516 96 1 * 343 240 0 0 chr6 15668159 15668234 -173611320 - MIR SINE MIR -71 137 63 2104 120 7 0 chr6 15669254 15669537 -173610017 + AluSp SINE Alu 1 285 -28 363 44 0 0 chr6 15669538 15669583 -173609971 + (GGAGAA)n Simple_repeat Simple_repeat 5 49 0 1822 168 0 19 chr6 15669724 15670034 -173609520 + AluJb SINE Alu 1 304 -8 322 259 80 9 chr6 15670038 15670150 -173609404 + MIR SINE MIR 84 203 -59 355 279 116 52 chr6 15670661 15670894 -173608660 + LTR16C LTR ERVL 244 491 0 3594 112 38 30 chr6 15670943 15671468 -173608086 - MER1A DNA MER1_type 0 529 1 1035 221 0 35 chr6 15671474 15671705 -173607849 + MER58A DNA MER1_type 2 224 0 222 140 140 0 chr6 15671706 15671763 -173607791 + MER5A DNA MER1_type 10 74 -115 483 287 41 83 chr6 15671914 15672086 -173607468 - Charlie8 DNA MER1_type -1916 501 323 2137 131 3 0 chr6 15672086 15672383 -173607171 - AluSx SINE Alu -14 298 1 483 287 41 83 chr6 15672383 15672694 -173606860 - Charlie8 DNA MER1_type -2094 323 38 246 316 79 0 chr6 15673378 15673530 -173606024 + MIR SINE MIR 45 208 -54 343 183 0 0 chr6 15675385 15675445 -173604109 + MIR3 SINE MIR 107 166 -42 1434 81 0 0 chr6 15675736 15675922 -173603632 - L1PA8 LINE L1 -8 6164 5979 434 257 47 29 chr6 15675967 15676147 -173603407 - L1MC/D LINE L1 -371 5750 5579 2278 100 3 3 chr6 15676922 15677223 -173602331 + AluSg SINE Alu 1 301 -9 200 299 0 124 chr6 15677449 15677586 -173601968 + L3 LINE CR1 1393 1512 -65 5018 87 10 9 chr6 15679087 15679768 -173599786 + L1PA11 LINE L1 5492 6173 -1 284 331 92 11 chr6 15679899 15680183 -173599371 + LTR16A LTR ERVL 60 366 -84 1723 211 64 10 chr6 15680270 15680677 -173598877 + L1MB2 LINE L1 5741 6169 -2 3397 307 43 28 chr6 15680696 15682052 -173597502 + HERV16 LTR ERVL 39 1415 -3581 2504 132 3 6 chr6 15682262 15682627 -173596927 - THE1B LTR MaLR 0 364 1 1611 270 69 15 chr6 15682739 15683262 -173596292 + HERV16 LTR ERVL 1841 2391 -2605 367 329 10 13 chr6 15683396 15683689 -173595865 + MERVL LTR ERVL 4731 5097 -667 436 328 90 4 chr6 15683902 15684170 -173595384 + LTR16A LTR ERVL 148 438 -12 824 176 0 0 chr6 15684328 15684453 -173595101 + FLAM_C SINE Alu 1 125 -18 2271 109 0 16 chr6 15685017 15685329 -173594225 + AluSc SINE Alu 1 307 -2 180 0 0 0 chr6 15685923 15685943 -173593611 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 343 262 113 21 chr6 15685967 15686108 -173593446 - MER5B DNA MER1_type -7 171 18 771 307 96 54 chr6 15686374 15686947 -173592607 + L3 LINE CR1 185 781 -796 603 351 62 27 chr6 15686947 15687429 -173592125 + L3 LINE CR1 1076 1574 -3 2400 204 24 22 chr6 15688483 15689022 -173590532 + MER74A LTR ERVL 1 540 -18 2384 86 3 3 chr6 15689029 15689342 -173590212 + AluSp SINE Alu 1 313 0 765 278 86 42 chr6 15689349 15689988 -173589566 + L2 LINE L2 2637 3313 0 748 234 97 21 chr6 15691153 15691391 -173588163 - MIR SINE MIR -1 261 3 484 270 68 14 chr6 15691761 15691909 -173587645 - MER63A DNA MER1_type 0 210 55 204 158 0 0 chr6 15691909 15691947 -173587607 + (TG)n Simple_repeat Simple_repeat 1 38 0 369 241 191 6 chr6 15692323 15692485 -173587069 + MIR SINE MIR 37 228 -34 206 369 67 13 chr6 15692599 15692748 -173586806 + L2 LINE L2 2904 3060 -212 357 234 109 8 chr6 15692978 15693106 -173586448 - MIR3 SINE MIR -7 201 61 4626 95 0 3 chr6 15693539 15694160 -173585394 + L1PA11 LINE L1 5546 6164 -10 180 0 0 0 chr6 15694165 15694185 -173585369 + (TAA)n Simple_repeat Simple_repeat 2 21 0 261 251 185 71 chr6 15694211 15694422 -173585132 + L2 LINE L2 3078 3312 -1 704 274 102 45 chr6 15694458 15694968 -173584586 - L1MEc LINE L1 -3009 3206 2668 31 0 0 0 chr6 15694983 15695014 -173584540 + AT_rich Low_complexity Low_complexity 1 31 0 483 331 56 43 chr6 15695239 15695707 -173583847 - L1MEc LINE L1 -4619 1777 1304 315 0 0 0 chr6 15695708 15695743 -173583811 + (TTC)n Simple_repeat Simple_repeat 2 36 0 238 229 0 49 chr6 15695797 15695858 -173583696 + MER3 DNA MER1_type 41 98 -111 198 103 0 0 chr6 15696053 15696082 -173583472 + (TA)n Simple_repeat Simple_repeat 1 29 0 441 54 0 0 chr6 15696111 15696167 -173583387 + (CA)n Simple_repeat Simple_repeat 2 57 0 315 297 0 85 chr6 15696196 15696361 -173583193 - L1MEc LINE L1 -5538 667 517 1087 192 65 39 chr6 15696655 15696915 -173582639 + L1MD3 LINE L1 7582 7848 -147 1075 128 0 0 chr6 15696927 15697083 -173582471 - AluSg/x SINE Alu -3 309 154 645 139 93 0 chr6 15697092 15697221 -173582333 + L1MD3 LINE L1 7855 7995 0 527 90 0 8 chr6 15697284 15697506 -173582048 + AluY SINE Alu 1 301 -11 2386 186 21 21 chr6 15697877 15697987 -173581567 + MLT1C LTR MaLR 1 110 -357 2494 149 84 0 chr6 15697987 15698404 -173581150 + LTR47A LTR ERVL 1 452 0 2386 186 21 21 chr6 15698404 15698760 -173580794 + MLT1C LTR MaLR 109 467 0 1038 214 54 44 chr6 15699952 15700269 -173579285 - MER33 DNA MER1_type 0 324 5 34 0 0 0 chr6 15701110 15701144 -173578410 + AT_rich Low_complexity Low_complexity 1 34 0 528 145 0 0 chr6 15701144 15701220 -173578334 - FAM SINE Alu -22 163 88 922 219 48 88 chr6 15701252 15701503 -173578051 - MLT1F LTR MaLR -294 248 8 2070 86 8 9 chr6 15702439 15702713 -173576841 + AluSg SINE Alu 1 280 -30 283 56 0 0 chr6 15702713 15702749 -173576805 + (TAAA)n Simple_repeat Simple_repeat 3 164 0 359 282 53 62 chr6 15704110 15704319 -173575235 + HAL1 LINE L1 31 237 -2270 207 0 0 0 chr6 15704452 15704475 -173575079 + (CAA)n Simple_repeat Simple_repeat 2 24 0 894 241 55 43 chr6 15704475 15704820 -173574734 + HAL1 LINE L1 1745 2093 -414 2030 183 66 29 chr6 15704897 15704937 -173574617 - MSTB LTR MaLR 0 426 389 2275 89 14 0 chr6 15704937 15705230 -173574324 + AluSq SINE Alu 1 297 -16 2030 183 66 29 chr6 15705230 15705600 -173573954 - MSTB LTR MaLR -37 389 1 2586 170 74 2 chr6 15705600 15706071 -173573483 - MSTB-int LTR MaLR 0 1651 1147 306 0 0 0 chr6 15708733 15708767 -173570787 + (CA)n Simple_repeat Simple_repeat 2 35 0 713 272 0 0 chr6 15708788 15708961 -173570593 + MIR SINE MIR 4 176 -86 2135 75 0 8 chr6 15709101 15709367 -173570187 + AluY SINE Alu 1 264 -47 2022 234 66 55 chr6 15709719 15710267 -173569287 + MLT2B3 LTR ERVL 1 554 0 219 315 0 14 chr6 15710379 15710452 -173569102 - MIR SINE MIR -189 73 2 180 333 0 0 chr6 15712256 15712313 -173567241 + L2 LINE L2 3256 3312 -1 2494 262 12 4 chr6 15713926 15714488 -173565066 + MLT1F1 LTR MaLR 1 567 0 220 279 44 0 chr6 15715047 15715115 -173564439 - MIR SINE MIR -69 193 123 1605 311 85 14 chr6 15716377 15717233 -173562321 + L2 LINE L2 1978 2894 -420 1825 154 175 21 chr6 15717969 15718391 -173561163 + LTR10A LTR ERV1 15 548 -61 252 304 133 13 chr6 15720213 15720371 -173559183 + MIR SINE MIR 48 224 -38 2321 117 122 8 chr6 15720698 15721082 -173558472 + MSTA LTR MaLR 1 428 0 2054 145 3 0 chr6 15721563 15721867 -173557687 + AluSq SINE Alu 1 305 -8 384 238 0 24 chr6 15723125 15723209 -173556345 + MLT1K LTR MaLR 433 514 -74 932 63 87 0 chr6 15723639 15723766 -173555788 + MER85 DNA T2_type 1 138 -1 1480 257 158 19 chr6 15723865 15724383 -173555171 - MLT1F1 LTR MaLR 0 567 4 198 0 0 0 chr6 15724629 15724651 -173554903 + (CA)n Simple_repeat Simple_repeat 2 23 0 4632 171 32 22 chr6 15724734 15725725 -173553829 - Charlie1a DNA MER1_type -6 1449 449 888 201 0 13 chr6 15725741 15725900 -173553654 + FRAM SINE Alu 1 157 -19 243 0 0 0 chr6 15725907 15725934 -173553620 + (CA)n Simple_repeat Simple_repeat 2 28 0 1281 192 31 102 chr6 15725948 15726381 -173553173 - Charlie1a DNA MER1_type -1035 420 29 1846 128 29 42 chr6 15726732 15727045 -173552509 + AluJo SINE Alu 1 309 -3 225 0 0 0 chr6 15727630 15727655 -173551899 + (CA)n Simple_repeat Simple_repeat 2 26 0 2025 148 3 0 chr6 15728115 15728413 -173551141 + AluSx SINE Alu 1 299 -13 2167 267 89 9 chr6 15728490 15729296 -173550258 + L1ME3A LINE L1 5295 6165 -5 237 280 27 0 chr6 15729562 15729637 -173549917 - L2 LINE L2 -25 3247 3171 180 179 0 0 chr6 15730463 15730502 -173549052 + GA-rich Low_complexity Low_complexity 2 40 0 524 261 137 0 chr6 15731675 15731828 -173547726 + MER5A DNA MER1_type 9 182 -7 491 324 55 21 chr6 15731987 15732225 -173547329 + MLT1K LTR MaLR 334 579 -9 1794 224 75 27 chr6 15733621 15734103 -173545451 - MLT1D LTR MaLR 0 505 1 261 300 133 0 chr6 15736088 15736178 -173543376 - MIR SINE MIR -126 136 35 225 139 0 0 chr6 15736363 15736406 -173543148 + (TC)n Simple_repeat Simple_repeat 1 43 0 263 330 0 0 chr6 15736526 15736614 -173542940 - MIR SINE MIR -55 207 120 977 212 33 24 chr6 15737493 15737705 -173541849 - MER58C DNA MER1_type 0 215 2 197 222 62 49 chr6 15737965 15738046 -173541508 + MIR SINE MIR 73 154 -108 472 238 86 13 chr6 15738535 15738686 -173540868 + MIR3 SINE MIR 33 194 -14 882 169 54 33 chr6 15740484 15740668 -173538886 + MER5A DNA MER1_type 2 189 0 236 290 70 47 chr6 15741455 15741669 -173537885 + L2 LINE L2 3067 3285 -28 194 235 12 74 chr6 15742180 15742261 -173537293 - MIR SINE MIR -46 216 141 2216 112 0 7 chr6 15742482 15742785 -173536769 - AluSg SINE Alu -9 301 1 270 203 14 43 chr6 15743507 15743576 -173535978 + G-rich Low_complexity Low_complexity 4 70 0 411 56 0 0 chr6 15744008 15744062 -173535492 + (TG)n Simple_repeat Simple_repeat 1 54 0 1717 202 62 29 chr6 15744112 15744562 -173534992 - MLT1C LTR MaLR -2 465 1 180 426 0 0 chr6 15744836 15744937 -173534617 - MIR SINE MIR -3 259 159 389 285 207 6 chr6 15744956 15745135 -173534419 - MIR SINE MIR -21 241 27 956 200 28 5 chr6 15746025 15746240 -173533314 - L1MB2 LINE L1 -12 6159 5940 258 281 130 65 chr6 15748916 15749101 -173530453 - MIR SINE MIR -19 243 47 1130 163 76 58 chr6 15749509 15749677 -173529877 + L1MB4 LINE L1 5892 6068 -112 441 54 0 0 chr6 15749677 15749733 -173529821 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1130 163 76 58 chr6 15749733 15749841 -173529713 + L1MB4 LINE L1 6068 6173 -7 2022 162 3 21 chr6 15749841 15750217 -173529337 + L1MB3 LINE L1 5813 6181 -2 292 330 9 0 chr6 15752262 15752374 -173527180 - MIR SINE MIR 0 262 150 2145 138 40 0 chr6 15752379 15752727 -173526827 + MLT2D LTR ERVL 5 366 -48 241 169 15 31 chr6 15752746 15752811 -173526743 + T-rich Low_complexity Low_complexity 5 68 0 244 167 0 0 chr6 15752835 15752877 -173526677 + MLT2D LTR ERVL 348 389 -8 * 253 56 111 0 chr6 15752845 15752881 -173526673 + MLT2B2 LTR ERVL 476 515 0 372 316 0 0 chr6 15752881 15752995 -173526559 - MIR SINE MIR -117 145 32 233 243 126 19 chr6 15753215 15753318 -173526236 + MIR SINE MIR 84 197 -65 540 311 36 13 chr6 15754045 15754270 -173525284 - MIR SINE MIR -29 233 4 192 280 224 14 chr6 15754320 15754463 -173525091 + MIR3 SINE MIR 33 205 -3 187 261 15 15 chr6 15755500 15755565 -173523989 + L2 LINE L2 3004 3068 -204 231 264 186 0 chr6 15757671 15757800 -173521754 - MIR3 SINE MIR -23 185 33 469 165 146 0 chr6 15758070 15758173 -173521381 + MER96 DNA MER1_type? 50 167 -8 273 57 0 0 chr6 15759191 15759226 -173520328 + (TG)n Simple_repeat Simple_repeat 2 36 0 246 81 0 0 chr6 15760041 15760078 -173519476 + (CA)n Simple_repeat Simple_repeat 1 37 0 314 331 25 16 chr6 15761405 15761526 -173518028 - MIR SINE MIR -71 137 16 241 255 49 49 chr6 15762350 15762452 -173517102 + L2 LINE L2 2988 3089 -183 279 133 0 0 chr6 15762631 15762676 -173516878 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2090 108 0 14 chr6 15763779 15764065 -173515489 + AluSx SINE Alu 17 298 -14 647 154 29 0 chr6 15764165 15764269 -173515285 + U6 snRNA snRNA 1 107 0 2279 111 0 0 chr6 15764732 15765038 -173514516 + AluY SINE Alu 1 306 -5 2296 112 0 0 chr6 15765397 15765701 -173513853 - AluSc SINE Alu -5 304 1 1375 228 132 41 chr6 15766203 15766664 -173512890 - MLT1D LTR MaLR 0 505 3 320 193 0 0 chr6 15768577 15768634 -173510920 - L2 LINE L2 -12 3260 3204 347 313 60 43 chr6 15769117 15769350 -173510204 - L3 LINE CR1 -33 1544 1308 1269 228 154 27 chr6 15769810 15770258 -173509296 + MLT1D LTR MaLR 1 626 0 1217 261 14 14 chr6 15771333 15771616 -173507938 + Tigger8 DNA MER2_type 4 286 -380 599 236 72 29 chr6 15771672 15771880 -173507674 + Tigger8 DNA MER2_type 421 637 -29 691 220 167 16 chr6 15772088 15772274 -173507280 + MER20 DNA MER1_type 1 214 -5 2444 133 25 46 chr6 15772379 15772814 -173506740 - MSTB LTR MaLR 0 426 1 634 279 88 0 chr6 15772885 15773100 -173506454 - MIR SINE MIR 0 262 29 233 268 98 0 chr6 15774178 15774290 -173505264 - MIR SINE MIR -8 254 132 1212 233 41 80 chr6 15774291 15774751 -173504803 - L1ME3A LINE L1 -9 6161 5720 314 285 89 24 chr6 15774762 15774885 -173504669 - MIR SINE MIR -131 131 1 1807 163 17 98 chr6 15776092 15776502 -173503052 - MLT1B LTR MaLR -9 381 5 207 0 0 0 chr6 15776938 15776961 -173502593 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 233 188 21 0 chr6 15778044 15778092 -173501462 - L2 LINE L2 0 3313 3265 209 371 61 35 chr6 15778806 15779148 -173500406 - L2 LINE L2 -80 3192 2842 747 165 0 45 chr6 15779509 15779671 -173499883 + FRAM SINE Alu 20 175 0 240 356 127 28 chr6 15780345 15780699 -173498855 - L2 LINE L2 -1149 2165 1777 1889 159 35 35 chr6 15780702 15780945 -173498609 - MER7A DNA MER2_type -2693 345 102 2169 127 0 13 chr6 15780945 15781261 -173498293 + AluSx SINE Alu 1 312 0 1889 159 35 35 chr6 15781261 15781363 -173498191 - MER7A DNA MER2_type -2935 103 2 293 220 285 19 chr6 15781494 15781708 -173497846 + L1ME4a LINE L1 5813 6083 -38 2221 68 24 31 chr6 15783191 15783483 -173496071 + AluSp SINE Alu 1 290 -23 4438 156 103 14 chr6 15783487 15784302 -173495252 - MER54A LTR ERVL -13 888 1 3355 189 50 106 chr6 15784313 15785039 -173494515 - L1MC5 LINE L1 -75 7886 7262 772 168 158 16 chr6 15785039 15785229 -173494325 + MER20 DNA MER1_type 1 217 -2 3355 189 50 106 chr6 15785229 15785784 -173493770 - L1MC5 LINE L1 -699 7262 6677 1719 82 0 0 chr6 15786255 15786463 -173493091 + AluSc SINE Alu 1 208 -101 266 216 0 0 chr6 15786463 15786514 -173493040 + AluSc SINE Alu 249 299 0 189 0 0 0 chr6 15787119 15787140 -173492414 + (T)n Simple_repeat Simple_repeat 1 21 0 590 221 108 28 chr6 15789307 15789520 -173490034 + MLT1J2 LTR MaLR 17 246 -204 622 205 13 128 chr6 15789620 15789842 -173489712 + MLT1J2 LTR MaLR 259 409 0 205 222 44 0 chr6 15789917 15789962 -173489592 + L2 LINE L2 3205 3251 -21 1659 191 36 28 chr6 15790161 15790523 -173489031 + MLT1A1 LTR MaLR 1 365 0 534 253 62 7 chr6 15790797 15790943 -173488611 + MER97b DNA MER1_type? 8 161 -892 342 171 13 13 chr6 15791465 15791541 -173488013 - L1MB8 LINE L1 -104 6074 5999 2287 138 30 54 chr6 15791674 15792101 -173487453 + MSTC LTR MaLR 1 417 -11 328 316 34 0 chr6 15792521 15792638 -173486916 - MIR SINE MIR -79 183 63 250 243 40 27 chr6 15792883 15792957 -173486597 - MLT1L LTR MaLR -318 297 223 236 263 20 71 chr6 15794079 15794178 -173485376 + MIR3 SINE MIR 110 203 -5 199 268 102 24 chr6 15794258 15794385 -173485169 - MIR SINE MIR -10 252 116 562 228 101 153 chr6 15794398 15795437 -173484117 + L2 LINE L2 2295 3296 -17 22 35 0 0 chr6 15796186 15796215 -173483339 + AT_rich Low_complexity Low_complexity 1 29 0 2909 48 0 16 chr6 15796224 15796598 -173482956 - L1PA8 LINE L1 -1 6171 5804 242 149 64 0 chr6 15796769 15796816 -173482738 + MER54A LTR ERVL 337 386 -515 2158 113 0 10 chr6 15796881 15797183 -173482371 - AluSq SINE Alu -12 301 3 2001 203 19 7 chr6 15797294 15797727 -173481827 + MER114 LTR ERV 1 438 -210 366 223 11 11 chr6 15797780 15797874 -173481680 + MER114 LTR ERV 555 648 0 2203 110 3 0 chr6 15798906 15799206 -173480348 - AluSg SINE Alu -9 301 1 180 0 0 0 chr6 15799218 15799238 -173480316 + (T)n Simple_repeat Simple_repeat 1 20 0 314 231 0 0 chr6 15799678 15799743 -173479811 + MIR SINE MIR 83 147 -115 1141 157 13 55 chr6 15799744 15799980 -173479574 + L1MB5 LINE L1 5799 6024 -150 1529 187 43 82 chr6 15799980 15800419 -173479135 + MLT1C LTR MaLR 1 422 -45 700 189 0 7 chr6 15800431 15800574 -173478980 + L1MB5 LINE L1 6025 6166 -8 343 230 35 0 chr6 15800624 15800711 -173478843 + MIR SINE MIR 173 262 0 2861 103 37 18 chr6 15800841 15800882 -173478672 - MLT2A1 LTR ERVL 0 444 405 387 0 0 0 chr6 15800882 15800925 -173478629 + (CA)n Simple_repeat Simple_repeat 2 44 0 2861 103 37 18 chr6 15800925 15801319 -173478235 - MLT2A1 LTR ERVL -39 405 1 531 298 88 17 chr6 15802673 15802911 -173476643 - MIR SINE MIR 0 262 8 216 0 0 0 chr6 15803131 15803155 -173476399 + (A)n Simple_repeat Simple_repeat 1 24 0 222 253 0 27 chr6 15803277 15803352 -173476202 + A-rich Low_complexity Low_complexity 3 75 0 3408 129 17 17 chr6 15803923 15804450 -173475104 - MER1A DNA MER1_type 0 527 1 296 290 0 0 chr6 15804596 15804665 -173474889 + L1ME LINE L1 5525 5593 -528 1876 126 0 0 chr6 15805061 15805316 -173474238 - AluSx SINE Alu -5 307 53 2034 115 7 7 chr6 15805353 15805632 -173473922 - AluSx SINE Alu -19 293 15 500 274 142 5 chr6 15805702 15805892 -173473662 + MIR SINE MIR 47 262 0 1058 214 106 65 chr6 15806011 15806333 -173473221 + MER2 DNA MER2_type 3 337 -8 180 306 42 14 chr6 15806652 15806724 -173472830 - MIR SINE MIR -88 120 47 486 239 61 61 chr6 15807278 15807491 -173472063 + MIR SINE MIR 20 232 -30 2264 89 3 0 chr6 15807556 15807838 -173471716 + AluSp SINE Alu 1 283 -30 2097 99 23 30 chr6 15808616 15808918 -173470636 - AluSq SINE Alu -13 300 1 331 343 50 14 chr6 15809468 15809608 -173469946 + MIR SINE MIR 43 187 -75 501 230 24 8 chr6 15809969 15810095 -173469459 - MER94 DNA DNA 0 134 7 314 189 47 9 chr6 15810351 15810457 -173469097 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 535 44 108 0 chr6 15810457 15810615 -173468939 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 0 0 0 chr6 15810679 15810706 -173468848 + AT_rich Low_complexity Low_complexity 1 27 0 402 243 62 35 chr6 15811460 15811604 -173467950 + MLT1L LTR MaLR 466 613 -2 468 289 44 72 chr6 15812066 15812315 -173467239 + MIR SINE MIR 21 262 0 2282 92 0 0 chr6 15812820 15813126 -173466428 - AluSx SINE Alu 0 306 1 724 280 88 79 chr6 15814245 15814553 -173465001 + Charlie7 DNA MER1_type 89 404 -2208 2418 90 0 19 chr6 15814553 15814864 -173464690 + AluSq SINE Alu 1 305 -8 724 280 88 79 chr6 15814864 15814987 -173464567 + Charlie7 DNA MER1_type 404 524 -2088 1092 142 7 0 chr6 15815080 15815270 -173464284 + AluSg/x SINE Alu 130 320 0 949 213 36 0 chr6 15815272 15815497 -173464057 + Charlie7 DNA MER1_type 599 831 -1781 24 53 0 0 chr6 15815524 15815562 -173463992 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr6 15815591 15815618 -173463936 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 15815618 15815639 -173463915 + AT_rich Low_complexity Low_complexity 1 21 0 2273 109 0 3 chr6 15815779 15816083 -173463471 + AluSx SINE Alu 1 303 -9 626 259 132 9 chr6 15816161 15816389 -173463165 + MIR SINE MIR 7 262 0 222 118 0 0 chr6 15816391 15816425 -173463129 + (TTA)n Simple_repeat Simple_repeat 2 35 0 294 29 0 0 chr6 15816557 15816592 -173462962 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1747 164 4 7 chr6 15816592 15816873 -173462681 - AluJb SINE Alu -32 280 1 1629 145 4 0 chr6 15816879 15817113 -173462441 - AluSx SINE Alu -77 235 1 243 327 77 0 chr6 15817589 15817693 -173461861 + MIR3 SINE MIR 66 177 -31 2802 152 12 0 chr6 15817741 15818162 -173461392 + MSTB LTR MaLR 1 426 0 848 95 16 0 chr6 15818450 15818576 -173460978 + L1MA8 LINE L1 6154 6281 -10 332 328 120 20 chr6 15818597 15818940 -173460614 - LTR33A LTR ERVL -106 415 54 2202 114 0 0 chr6 15819033 15819322 -173460232 - AluSx SINE Alu -15 297 9 270 95 0 0 chr6 15820456 15820498 -173459056 + (GA)n Simple_repeat Simple_repeat 2 43 0 219 284 60 0 chr6 15820590 15820657 -173458897 + MIR SINE MIR 98 168 -94 1942 134 33 0 chr6 15820761 15821036 -173458518 - AluSg SINE Alu -26 284 1 247 279 174 0 chr6 15824635 15824721 -173454833 - MIR SINE MIR -75 187 87 2344 93 3 3 chr6 15826468 15826770 -173452784 + AluSg SINE Alu 1 302 -8 1126 264 40 46 chr6 15827853 15828402 -173451152 - L2 LINE L2 -4 3309 2767 989 236 176 0 chr6 15828407 15828998 -173450556 - LTR50 LTR ERVL -3 792 2 758 221 172 50 chr6 15828999 15829326 -173450228 - L2 LINE L2 -545 2769 2483 2056 125 11 0 chr6 15829326 15829606 -173449948 + AluSx SINE Alu 20 302 -10 758 221 172 50 chr6 15829606 15829731 -173449823 - L2 LINE L2 -831 2483 2183 228 363 124 17 chr6 15829756 15829990 -173449564 + MIR SINE MIR 3 261 -1 24 0 0 0 chr6 15830209 15830233 -173449321 + AT_rich Low_complexity Low_complexity 1 24 0 544 138 184 0 chr6 15830233 15830342 -173449212 - FLAM_C SINE Alu 0 133 5 563 265 86 6 chr6 15831351 15831513 -173448041 + MER5B DNA MER1_type 1 175 -3 724 129 8 8 chr6 15831622 15831640 -173447914 + (TTCC)n Simple_repeat Simple_repeat 1 18 -114 2479 158 10 2 chr6 15831640 15832039 -173447515 - MER57A LTR ERV1 0 403 2 724 129 8 8 chr6 15832039 15832152 -173447402 + (TTCC)n Simple_repeat Simple_repeat 17 132 0 22 35 0 0 chr6 15832419 15832448 -173447106 + AT_rich Low_complexity Low_complexity 1 29 0 1704 171 54 7 chr6 15833809 15834179 -173445375 + AluJo SINE Alu 1 384 0 2087 119 32 3 chr6 15835374 15835719 -173443835 + L1MA4 LINE L1 5941 6295 -5 2492 70 7 0 chr6 15835909 15836209 -173443345 + AluY SINE Alu 1 302 -9 2032 135 10 0 chr6 15836245 15836534 -173443020 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 15837604 15837626 -173441928 + AT_rich Low_complexity Low_complexity 1 22 0 275 304 0 0 chr6 15839062 15839141 -173440413 + MIR SINE MIR 48 126 -136 1854 169 0 7 chr6 15889467 15889763 -173389791 + AluJo SINE Alu 1 294 -18 626 263 142 12 chr6 15890243 15890483 -173389071 - MLT1J LTR MaLR 0 511 241 736 240 58 0 chr6 15890903 15891074 -173388480 + MLT1J LTR MaLR 28 208 -303 225 0 0 0 chr6 15891082 15891107 -173388447 + (CA)n Simple_repeat Simple_repeat 2 26 0 1558 182 19 4 chr6 15891109 15891378 -173388176 + AluJo SINE Alu 1 273 -39 616 141 16 8 chr6 15891385 15891506 -173388048 + GA-rich Low_complexity Low_complexity 3 124 0 716 258 20 63 chr6 15891506 15891758 -173387796 + MLT1J LTR MaLR 271 511 0 208 305 63 11 chr6 15892620 15892715 -173386839 + MIR SINE MIR 46 145 -63 2087 125 3 23 chr6 15892730 15893035 -173386519 + AluSx SINE Alu 1 299 -13 1662 170 6 50 chr6 15893970 15894293 -173385261 + AluJo SINE Alu 1 309 -3 3475 169 19 2 chr6 15894511 15895126 -173384428 + L1MB3 LINE L1 5551 6176 -7 586 175 70 0 chr6 15895406 15895520 -173384034 + L1ME3A LINE L1 6034 6155 -15 1651 145 34 0 chr6 15898935 15899204 -173380350 - MLT1B LTR MaLR 0 390 113 292 217 241 0 chr6 15899269 15899352 -173380202 - MIR3 SINE MIR -49 159 57 755 235 31 10 chr6 15899585 15899781 -173379773 - MLT1C LTR MaLR 0 467 268 1170 100 6 6 chr6 15899799 15899969 -173379585 + MER4A LTR ERV1 1 170 -494 2119 105 7 17 chr6 15899978 15900274 -173379280 + MER4A LTR ERV1 372 664 0 1412 166 25 17 chr6 15900274 15900515 -173379039 - MLT1C LTR MaLR -224 243 1 583 134 34 59 chr6 15901480 15901599 -173377955 + MLT1B LTR MaLR 5 120 -270 2477 170 70 19 chr6 15901794 15902324 -173377230 + MER89 LTR ERV1 3 559 0 393 22 0 0 chr6 15903502 15903548 -173376006 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 266 38 0 chr6 15904397 15904476 -173375078 + GA-rich Low_complexity Low_complexity 4 85 0 711 286 95 36 chr6 15905003 15905419 -173374135 - LTR16A LTR ERVL -8 449 1 553 228 102 45 chr6 15905730 15905976 -173373578 - L1ME4a LINE L1 -21 6100 5841 192 238 0 0 chr6 15906437 15906479 -173373075 + L3 LINE CR1 1530 1571 -6 454 168 32 80 chr6 15907799 15907861 -173371693 - LTR33 LTR ERVL 0 521 466 1878 128 40 17 chr6 15907861 15908158 -173371396 - AluSx SINE Alu -3 309 6 454 168 32 80 chr6 15908158 15908220 -173371334 - LTR33 LTR ERVL -55 466 403 478 262 87 17 chr6 15908293 15908465 -173371089 - LTR33 LTR ERVL -236 285 102 1127 203 266 18 chr6 15908970 15909364 -173370190 + MLT1C LTR MaLR 14 467 0 217 250 28 42 chr6 15910918 15910990 -173368564 + MIR SINE MIR 186 256 -6 214 159 68 0 chr6 15911559 15911603 -173367951 + GA-rich Low_complexity Low_complexity 4 50 0 2307 112 0 0 chr6 15912254 15912566 -173366988 + AluSx SINE Alu 1 312 0 827 180 7 0 chr6 15912568 15912707 -173366847 + AluJb SINE Alu 134 273 -39 1682 176 59 115 chr6 15913631 15914170 -173365384 + L1MD1 LINE L1 5722 6230 -12 220 281 0 0 chr6 15914172 15914229 -173365325 + GA-rich Low_complexity Low_complexity 2 58 0 1701 166 35 0 chr6 15915228 15915511 -173364043 - AluJb SINE Alu -19 293 1 27 0 0 0 chr6 15916419 15916446 -173363108 + AT_rich Low_complexity Low_complexity 1 27 0 710 158 105 18 chr6 15918340 15918511 -173361043 + MER53 DNA DNA 1 186 -3 2432 84 0 10 chr6 15918847 15919158 -173360396 + AluY SINE Alu 2 309 -2 2109 124 41 0 chr6 15920608 15920899 -173358655 - AluSq SINE Alu -10 303 1 280 220 0 10 chr6 15920910 15921010 -173358544 - L2 LINE L2 -1 3271 3177 2873 122 19 36 chr6 15921154 15921678 -173357876 - L1MA8 LINE L1 -3 6288 5774 1364 201 0 0 chr6 15921727 15921966 -173357588 - L1MA8 LINE L1 -498 5793 5555 1626 157 3 67 chr6 15922108 15922408 -173357146 - AluJo SINE Alu -31 281 1 233 278 127 24 chr6 15922413 15922539 -173357015 - MER113 DNA MER1_type? -378 143 5 304 169 121 48 chr6 15923059 15923142 -173356412 - MLT1C LTR MaLR -378 89 1 593 245 69 65 chr6 15923142 15923242 -173356312 - L2 LINE L2 -522 2792 2694 2364 52 24 10 chr6 15923242 15923533 -173356021 + AluY SINE Alu 1 295 -16 593 245 69 65 chr6 15923533 15923648 -173355906 - L2 LINE L2 -620 2694 2576 564 274 128 54 chr6 15924270 15924414 -173355140 - L2 LINE L2 0 3313 3181 2149 132 3 0 chr6 15924414 15924717 -173354837 + AluSq SINE Alu 1 304 -9 564 274 128 54 chr6 15924717 15924977 -173354577 - L2 LINE L2 -132 3181 2879 262 242 0 15 chr6 15925012 15925078 -173354476 - MER20B DNA MER1_type -623 160 96 725 269 63 16 chr6 15925197 15925247 -173354307 - L2 LINE L2 -474 2840 2794 1806 177 107 19 chr6 15925247 15925676 -173353878 - MLT1C LTR MaLR 0 467 1 725 269 63 16 chr6 15925676 15925878 -173353676 - L2 LINE L2 -520 2794 2576 207 0 0 0 chr6 15926484 15926507 -173353047 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1293 220 23 71 chr6 15926975 15927329 -173352225 + MER58B DNA MER1_type 4 340 -1 2346 113 0 3 chr6 15927395 15927706 -173351848 - AluSx SINE Alu -2 310 1 357 282 57 8 chr6 15927748 15927872 -173351682 - L2 LINE L2 -1 3271 3142 514 220 88 90 chr6 15928240 15928499 -173351055 + L1ME3A LINE L1 5682 5940 -249 733 199 50 50 chr6 15928685 15928866 -173350688 + AluJo SINE Alu 125 305 -7 643 116 0 0 chr6 15928876 15928971 -173350583 + L1MA3 LINE L1 6211 6305 0 377 243 32 54 chr6 15929026 15929211 -173350343 - L2 LINE L2 -580 2734 2554 1784 70 0 17 chr6 15929323 15929564 -173349990 + L1PA14 LINE L1 5925 6161 0 411 244 76 0 chr6 15931187 15931306 -173348248 - MIR3 SINE MIR -23 185 58 1284 132 57 44 chr6 15931597 15931824 -173347730 + Tigger2a DNA MER2_type 1 230 -204 1931 132 0 0 chr6 15931882 15932140 -173347414 - AluSx SINE Alu -54 258 1 1152 178 82 0 chr6 15932142 15932361 -173347193 + Tigger2a DNA MER2_type 198 434 0 1736 174 0 3 chr6 15932559 15932852 -173346702 + AluJo SINE Alu 1 292 -20 202 258 258 0 chr6 15932861 15932950 -173346604 + MER5A DNA MER1_type 69 180 -9 2198 126 0 0 chr6 15933094 15933388 -173346166 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr6 15934148 15934168 -173345386 + (A)n Simple_repeat Simple_repeat 1 20 0 249 108 0 0 chr6 15934385 15934422 -173345132 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr6 15934613 15934633 -173344921 + (A)n Simple_repeat Simple_repeat 1 20 0 2125 133 0 13 chr6 15935835 15936144 -173343410 - AluSx SINE Alu -7 305 1 33 56 0 0 chr6 15936615 15936669 -173342885 + AT_rich Low_complexity Low_complexity 1 54 0 2051 121 3 0 chr6 15936687 15936969 -173342585 + AluSx SINE Alu 15 297 -15 23 54 0 0 chr6 15937001 15937038 -173342516 + AT_rich Low_complexity Low_complexity 1 37 0 1706 181 15 75 chr6 15937312 15937458 -173342096 + MLT1A2 LTR MaLR 1 154 -220 2029 188 25 0 chr6 15937458 15937814 -173341740 + MLT1A1 LTR MaLR 1 365 0 1706 181 15 75 chr6 15937814 15938065 -173341489 + MLT1A2 LTR MaLR 154 374 0 195 42 0 0 chr6 15938184 15938208 -173341346 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 15938994 15939020 -173340534 + (A)n Simple_repeat Simple_repeat 1 26 0 192 97 0 0 chr6 15939181 15939212 -173340342 + (A)n Simple_repeat Simple_repeat 1 31 0 2502 56 7 3 chr6 15939478 15939780 -173339774 + AluSp SINE Alu 1 303 -10 796 277 101 71 chr6 15940572 15941759 -173337795 - L1ME LINE L1 -260 5904 4660 2490 66 0 3 chr6 15941759 15942060 -173337494 + AluSp SINE Alu 3 302 -11 796 277 101 71 chr6 15942060 15942341 -173337213 - L1ME LINE L1 -1504 4660 4389 2350 87 3 6 chr6 15942579 15942890 -173336664 + AluSp SINE Alu 1 310 -3 1365 237 55 23 chr6 15943688 15944072 -173335482 - MSTD LTR MaLR 0 396 1 2488 77 7 0 chr6 15944842 15945152 -173334402 + AluSp SINE Alu 1 312 -1 791 136 0 0 chr6 15947712 15947822 -173331732 + MSTC LTR MaLR 1 110 -318 741 151 8 0 chr6 15947812 15947931 -173331623 + MSTC LTR MaLR 309 428 0 * 22 0 0 0 chr6 15947951 15947973 -173331581 + AT_rich Low_complexity Low_complexity 1 22 0 316 208 57 28 chr6 15948547 15948653 -173330901 + L1 LINE L1 5172 5280 -866 233 318 12 12 chr6 15948662 15948747 -173330807 + L1MC/D LINE L1 5545 5629 -2179 221 290 93 93 chr6 15949479 15949803 -173329751 - L2 LINE L2 -12 3260 2937 712 168 34 0 chr6 15950332 15950451 -173329103 + AluY SINE Alu 2 124 -187 4323 131 96 48 chr6 15950453 15951847 -173327707 - pTR5 LTR ERV1 0 2438 744 1430 70 0 30 chr6 15951847 15952046 -173327508 + AluY SINE Alu 119 311 0 739 184 63 23 chr6 15952096 15952270 -173327284 - MER5A DNA MER1_type -7 182 2 196 292 15 15 chr6 15952270 15952333 -173327221 - MIR SINE MIR -63 145 83 1507 170 49 35 chr6 15953725 15954013 -173325541 - AluJo SINE Alu -20 292 1 257 288 0 0 chr6 15955317 15955376 -173324178 + MIR SINE MIR 87 145 -63 561 172 123 0 chr6 15956091 15956213 -173323341 - MER103 DNA DNA -3 163 27 1891 166 3 10 chr6 15956228 15956542 -173323012 + AluJb SINE Alu 1 312 0 244 319 138 12 chr6 15956901 15957061 -173322493 - MIR3 SINE MIR -5 203 24 404 258 166 6 chr6 15957273 15957436 -173322118 + MIR3 SINE MIR 20 208 0 1404 204 15 55 chr6 15961260 15961624 -173317930 - MLT1A1 LTR MaLR -3 425 20 2518 161 0 45 chr6 15961629 15962004 -173317550 + Tigger2a DNA MER2_type 3 356 -2352 1682 166 6 54 chr6 15962004 15962317 -173317237 + AluJb SINE Alu 1 298 -14 2518 161 0 45 chr6 15962317 15962388 -173317166 + Tigger2a DNA MER2_type 356 429 -5 425 255 31 31 chr6 15962557 15962718 -173316836 + MIR3 SINE MIR 34 194 -14 1244 143 0 11 chr6 15962865 15963054 -173316500 + AluJo SINE Alu 1 187 -125 249 27 0 0 chr6 15963055 15963092 -173316462 + Alu SINE Alu 130 166 0 207 222 25 74 chr6 15964100 15964181 -173315373 - MIR SINE MIR -78 184 108 198 297 0 27 chr6 15965685 15965759 -173313795 + L2 LINE L2 3230 3301 -12 429 218 7 14 chr6 15965810 15965952 -173313602 + GA-rich Low_complexity Low_complexity 4 144 0 264 59 0 0 chr6 15966866 15966900 -173312654 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 599 135 0 9 chr6 15966990 15967101 -173312453 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 576 291 14 19 chr6 15967106 15967316 -173312238 - MIR SINE MIR -14 248 40 830 233 48 31 chr6 15967706 15967934 -173311620 + MLT1J LTR MaLR 28 259 -252 2146 160 3 8 chr6 15968277 15968645 -173310909 + MER47A DNA MER2_type 1 366 0 2151 147 0 0 chr6 15969510 15969822 -173309732 - AluSx SINE Alu 0 312 1 1910 124 40 40 chr6 15970895 15971194 -173308360 - AluSg SINE Alu -11 299 1 2089 98 4 7 chr6 15973064 15973338 -173306216 + AluSc SINE Alu 1 273 -36 28 29 0 0 chr6 15973338 15973373 -173306181 + AT_rich Low_complexity Low_complexity 1 35 0 223 298 96 10 chr6 15973847 15973951 -173305603 - L2 LINE L2 -6 3266 3154 294 354 53 0 chr6 15973993 15974106 -173305448 + L2 LINE L2 3150 3268 -4 248 0 0 30 chr6 15974956 15974989 -173304565 + (CA)n Simple_repeat Simple_repeat 2 33 0 2179 190 70 0 chr6 15975745 15976176 -173303378 - LOR1b LTR ERV1 0 461 1 2975 239 17 2 chr6 15976454 15977095 -173302459 + MER82 DNA MER2_type 2 652 -1 281 102 8 76 chr6 15977251 15977369 -173302185 + (TA)n Simple_repeat Simple_repeat 1 110 0 1426 138 0 5 chr6 15977372 15977582 -173301972 - AluJb SINE Alu -6 306 98 22 35 0 0 chr6 15977737 15977766 -173301788 + AT_rich Low_complexity Low_complexity 1 29 0 673 158 72 13 chr6 15978228 15978380 -173301174 - MER58 DNA MER1_type -1 2419 2259 1801 169 3 13 chr6 15978382 15978683 -173300871 + AluSq SINE Alu 1 298 -15 353 213 11 75 chr6 15978686 15978780 -173300774 - MER58 DNA MER1_type -250 91 4 723 203 172 0 chr6 15978795 15978958 -173300596 + MER3 DNA MER1_type 1 191 -18 724 210 40 158 chr6 15979172 15979236 -173300318 + MER119 DNA MER1_type 8 78 -505 1705 176 30 10 chr6 15979236 15979531 -173300023 - AluJb SINE Alu -9 303 3 724 210 40 158 chr6 15979531 15979794 -173299760 + MER119 DNA MER1_type 78 296 -287 1813 103 64 29 chr6 15980073 15980379 -173299175 - AluJo SINE Alu 0 312 2 240 111 0 0 chr6 15980964 15981000 -173298554 + (T)n Simple_repeat Simple_repeat 1 36 0 241 336 56 8 chr6 15981356 15981481 -173298073 - L2 LINE L2 -26 3246 3116 428 368 36 10 chr6 15981874 15982067 -173297487 + L2 LINE L2 2983 3180 -92 802 140 6 28 chr6 15982081 15982260 -173297294 + GA-rich Low_complexity Low_complexity 2 176 0 1824 197 117 5 chr6 15982483 15982895 -173296659 - Charlie4a DNA MER1_type -13 495 38 305 309 69 37 chr6 15982933 15983121 -173296433 - L2 LINE L2 -1407 1907 1714 1403 157 92 0 chr6 15985665 15985927 -173293627 + MER7A DNA MER2_type 1 284 -62 852 159 0 132 chr6 15985998 15986187 -173293367 + Tigger3(Golem) DNA MER2_type 2865 3028 -1 2358 108 0 0 chr6 15988003 15988308 -173291246 - AluSq SINE Alu -6 307 3 2226 136 0 0 chr6 15988756 15989066 -173290488 + AluSx SINE Alu 1 310 -2 974 181 0 12 chr6 15989188 15989354 -173290200 + AluJb SINE Alu 136 299 -13 550 249 170 61 chr6 15989586 15990081 -173289473 + MLT1H LTR MaLR 1 549 0 326 301 0 0 chr6 15990495 15990598 -173288956 - MIR SINE MIR 0 262 160 893 283 215 8 chr6 15990604 15991093 -173288461 - L2 LINE L2 0 3313 2927 2025 134 3 13 chr6 15991093 15991406 -173288148 + AluJb SINE Alu 1 310 -2 893 283 215 8 chr6 15991406 15991604 -173287950 - L2 LINE L2 -386 2927 2471 322 309 79 14 chr6 15991623 15991762 -173287792 - MIR SINE MIR -113 149 2 237 180 40 0 chr6 15992559 15992609 -173286945 + CT-rich Low_complexity Low_complexity 1 52 0 668 201 5 79 chr6 15993176 15993365 -173286189 + MIR SINE MIR 61 235 -27 1672 159 43 40 chr6 15993370 15993671 -173285883 - AluJo SINE Alu -10 302 1 21 57 0 0 chr6 15993671 15993706 -173285848 + AT_rich Low_complexity Low_complexity 1 35 0 1278 207 0 7 chr6 15993961 15994231 -173285323 + AluSc SINE Alu 12 279 -30 2109 125 57 20 chr6 15995451 15995802 -173283752 - THE1B LTR MaLR 0 364 1 192 152 0 0 chr6 15996887 15996920 -173282634 + T-rich Low_complexity Low_complexity 1 33 0 2141 120 0 0 chr6 15997035 15997339 -173282215 + AluSx SINE Alu 1 304 0 753 195 32 37 chr6 15998425 15998615 -173280939 - MER53 DNA DNA 0 189 1 249 259 47 12 chr6 15998830 15998915 -173280639 + GA-rich Low_complexity Low_complexity 1 88 0 219 69 0 0 chr6 16000978 16001007 -173278547 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 16001214 16001235 -173278319 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 69 63 chr6 16001598 16001773 -173277781 - MIR SINE MIR -67 195 20 975 169 0 0 chr6 16003137 16003325 -173276229 - AluJo/FRAM SINE Alu 0 321 134 2179 101 35 0 chr6 16003325 16003611 -173275943 - AluSx SINE Alu -6 306 11 845 339 97 21 chr6 16004175 16005134 -173274420 - L2 LINE L2 -576 2738 1707 235 281 88 9 chr6 16005309 16005423 -173274131 - MIR3 SINE MIR -13 195 73 25 0 0 0 chr6 16006195 16006220 -173273334 + AT_rich Low_complexity Low_complexity 1 25 0 566 211 109 0 chr6 16008023 16008086 -173271468 - MER5A DNA MER1_type 0 189 134 2600 38 3 25 chr6 16008086 16008400 -173271154 + AluY SINE Alu 1 307 -4 566 211 109 0 chr6 16008400 16008483 -173271071 - MER5A DNA MER1_type -55 134 27 245 29 29 0 chr6 16008604 16008638 -173270916 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 449 248 15 14 chr6 16009023 16009162 -173270392 - L1ME3 LINE L1 0 6170 6031 1492 109 0 35 chr6 16009166 16009396 -173270158 - AluSq SINE Alu -9 304 83 1932 128 0 7 chr6 16009396 16009678 -173269876 - AluSx SINE Alu -28 284 5 461 283 54 67 chr6 16009693 16010098 -173269456 - L1MB8 LINE L1 -220 5944 5542 448 282 32 32 chr6 16010213 16010337 -173269217 - L2 LINE L2 0 3313 3190 1653 162 23 10 chr6 16010451 16010576 -173268978 + AluJb SINE Alu 5 127 -185 2208 97 3 3 chr6 16010576 16010875 -173268679 + AluSq SINE Alu 1 299 -14 1653 162 23 10 chr6 16010875 16011052 -173268502 + AluJb SINE Alu 127 311 -1 2453 43 7 3 chr6 16011612 16011913 -173267641 + AluY SINE Alu 1 302 -9 4157 179 13 55 chr6 16012565 16012784 -173266770 - Charlie1a DNA MER1_type -1306 1455 1228 2077 99 0 0 chr6 16012784 16013093 -173266461 + AluSx SINE Alu 1 309 0 4157 179 13 55 chr6 16013093 16013867 -173265687 - Charlie1a DNA MER1_type -1533 1228 503 1170 206 56 103 chr6 16013906 16014373 -173265181 + MLT1C LTR MaLR 23 467 0 * 2057 228 16 46 chr6 16014373 16014587 -173264967 - Charlie1a DNA MER1_type -2259 502 283 2291 69 16 0 chr6 16014587 16014890 -173264664 + AluSp SINE Alu 1 308 -5 2057 228 16 46 chr6 16014890 16015191 -173264363 - Charlie1a DNA MER1_type -2478 283 3 241 342 71 26 chr6 16015528 16015683 -173263871 + L2 LINE L2 2902 3063 -209 2108 127 0 0 chr6 16016155 16016463 -173263091 + AluSx SINE Alu 1 308 -4 397 301 62 20 chr6 16016711 16016857 -173262697 + L2 LINE L2 3117 3268 -4 474 92 46 58 chr6 16017707 16017794 -173261760 - MER53 DNA DNA -2 187 102 513 0 0 0 chr6 16018038 16018095 -173261459 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 1915 111 30 0 chr6 16018097 16018368 -173261186 - AluSg SINE Alu -31 279 1 339 366 73 52 chr6 16018946 16019274 -173260280 + L1ME LINE L1 5460 5794 -376 2395 54 0 0 chr6 16019285 16019581 -173259973 + AluY SINE Alu 1 296 -15 2045 128 0 0 chr6 16019651 16019947 -173259607 + AluSx SINE Alu 1 296 -16 629 283 61 67 chr6 16019951 16020356 -173259198 - MLT1I LTR MaLR 0 409 5 2037 104 3 10 chr6 16020397 16020704 -173258850 + AluSc SINE Alu 1 305 -4 304 243 37 19 chr6 16020809 16020916 -173258638 + L1ME4a LINE L1 6012 6120 -1 195 129 0 0 chr6 16021857 16021888 -173257666 + (A)n Simple_repeat Simple_repeat 1 31 0 2052 114 0 20 chr6 16021890 16022196 -173257358 + AluSg SINE Alu 1 300 -10 2204 98 3 0 chr6 16023478 16023784 -173255770 - AluSp SINE Alu -5 308 2 2035 156 15 38 chr6 16023923 16024225 -173255329 - MLT1B LTR MaLR 0 390 98 1747 135 43 0 chr6 16024225 16024507 -173255047 + AluSx SINE Alu 14 307 -5 2035 156 15 38 chr6 16024507 16024602 -173254952 - MLT1B LTR MaLR -292 98 2 2025 90 31 3 chr6 16025981 16026271 -173253283 + AluSg SINE Alu 1 298 -12 204 67 0 0 chr6 16026271 16026301 -173253253 + (TA)n Simple_repeat Simple_repeat 2 31 0 863 284 43 16 chr6 16026695 16026949 -173252605 + MIR SINE MIR 2 262 0 240 270 32 0 chr6 16026991 16027054 -173252500 - MIR SINE MIR -2 260 196 31 0 0 0 chr6 16027063 16027094 -173252460 + AT_rich Low_complexity Low_complexity 1 31 0 445 250 224 7 chr6 16027599 16027751 -173251803 - MIR SINE MIR -71 191 7 843 200 6 6 chr6 16027892 16028067 -173251487 + FAM SINE Alu 1 49 0 1446 263 77 29 chr6 16028082 16028808 -173250746 - L1MC4a LINE L1 -334 5787 5390 2028 109 27 3 chr6 16029509 16029802 -173249752 + AluSq SINE Alu 1 300 -13 337 302 78 15 chr6 16029925 16030115 -173249439 - L1ME LINE L1 -312 5809 5632 183 80 0 0 chr6 16030115 16030140 -173249414 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1661 156 14 18 chr6 16030144 16030426 -173249128 - AluJo SINE Alu -31 281 1 371 291 127 8 chr6 16030464 16030598 -173248956 - L2 LINE L2 0 3313 3164 500 292 131 63 chr6 16030755 16031161 -173248393 - L2 LINE L2 -338 2976 2599 2042 112 3 0 chr6 16031161 16031457 -173248097 - AluSq SINE Alu -15 298 2 500 292 131 63 chr6 16031457 16031759 -173247795 - L2 LINE L2 -715 2599 2220 273 206 32 16 chr6 16033048 16033111 -173246443 - L1ME4a LINE L1 -90 6031 5968 2253 103 7 0 chr6 16034024 16034334 -173245220 + AluSx SINE Alu 1 312 0 303 250 15 0 chr6 16034452 16034520 -173245034 - MER5B DNA MER1_type 0 178 110 203 149 43 21 chr6 16034531 16034578 -173244976 + (CACCC)n Simple_repeat Simple_repeat 4 51 0 23 0 0 0 chr6 16034905 16034928 -173244626 + AT_rich Low_complexity Low_complexity 1 23 0 2168 106 3 0 chr6 16035992 16036293 -173243261 + AluSp SINE Alu 1 302 -11 369 342 176 5 chr6 16036621 16037036 -173242518 + L2 LINE L2 2013 2498 -816 458 305 43 53 chr6 16037359 16037753 -173241801 + L2 LINE L2 2579 2968 -346 2456 125 188 10 chr6 16037936 16038416 -173241138 + MER34B LTR ERV1 1 565 0 1530 201 43 59 chr6 16039949 16040478 -173239076 - MER39 LTR ERV1 -2 705 1 1095 103 75 61 chr6 16041096 16041310 -173238244 - MER34B LTR ERV1 0 565 349 1325 210 28 10 chr6 16041311 16041602 -173237952 - AluJo SINE Alu -13 299 4 758 176 0 0 chr6 16041607 16041732 -173237822 - FLAM_C SINE Alu -12 131 7 2082 167 14 3 chr6 16041740 16042087 -173237467 - MER34B LTR ERV1 -214 351 1 1547 179 42 0 chr6 16042761 16043046 -173236508 - AluJb SINE Alu -15 297 1 189 0 0 0 chr6 16044354 16044375 -173235179 + (TC)n Simple_repeat Simple_repeat 2 22 0 904 131 7 0 chr6 16044379 16044516 -173235038 - FLAM_C SINE Alu -5 138 1 254 132 19 0 chr6 16044516 16044569 -173234985 + CT-rich Low_complexity Low_complexity 1 54 0 364 200 124 65 chr6 16045888 16046073 -173233481 - MER34C LTR ERV1 -5 580 385 2202 94 33 0 chr6 16046912 16047211 -173232343 + AluSx SINE Alu 1 309 -3 950 165 33 0 chr6 16047502 16047684 -173231870 - MER53 DNA DNA -1 188 1 208 399 74 31 chr6 16050611 16050774 -173228780 + L2 LINE L2 3102 3271 -1 2123 102 7 0 chr6 16051262 16051565 -173227989 + AluSq SINE Alu 2 306 -7 2144 116 10 0 chr6 16052807 16053117 -173226437 + AluSq SINE Alu 1 313 0 1574 98 45 29 chr6 16054229 16054473 -173225081 - AluSx SINE Alu -17 295 48 488 219 10 0 chr6 16054715 16054811 -173224743 + MER5A DNA MER1_type 10 106 -83 478 326 32 11 chr6 16054961 16055151 -173224403 - MIR SINE MIR -55 207 14 805 161 0 29 chr6 16055538 16055675 -173223879 - FLAM_C SINE Alu 0 133 1 181 288 207 27 chr6 16056036 16056147 -173223407 + L3 LINE CR1 340 470 -1107 2431 203 42 71 chr6 16056714 16056916 -173222638 + MER63C DNA MER1_type 2 208 -854 705 118 55 0 chr6 16056916 16057026 -173222528 - FLAM_C SINE Alu -16 117 2 2431 203 42 71 chr6 16057026 16057359 -173222195 + MER63C DNA MER1_type 208 549 -513 908 228 27 14 chr6 16057359 16057578 -173221976 - MER58A DNA MER1_type -1 223 2 2431 203 42 71 chr6 16057578 16057742 -173221812 + MER63C DNA MER1_type 549 716 -346 2600 159 19 21 chr6 16057742 16058207 -173221347 - MLT1C LTR MaLR -1 466 3 2431 203 42 71 chr6 16058207 16058267 -173221287 + MER63C DNA MER1_type 716 776 -286 1918 57 4 12 chr6 16058267 16058514 -173221040 + AluY SINE Alu 39 306 0 208 0 0 0 chr6 16058514 16058537 -173221017 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2114 123 3 0 chr6 16058547 16058855 -173220699 + AluSg SINE Alu 1 309 -1 2431 203 42 71 chr6 16058855 16058952 -173220602 + MER63C DNA MER1_type 785 842 -90 1684 161 0 57 chr6 16058993 16059309 -173220245 - AluSx SINE Alu -12 300 3 455 212 121 0 chr6 16059311 16059410 -173220144 + MER63C DNA MER1_type 820 930 0 2929 68 3 0 chr6 16059459 16059813 -173219741 + THE1A LTR MaLR 1 355 0 680 285 28 64 chr6 16060631 16061044 -173218510 - MLT1J1 LTR MaLR 0 446 71 2168 202 29 2 chr6 16061412 16061827 -173217727 - MSTB LTR MaLR 0 426 1 2156 105 3 7 chr6 16062249 16062553 -173217001 + AluSq SINE Alu 1 303 -10 2206 80 3 7 chr6 16063109 16063408 -173216146 + AluY SINE Alu 1 298 -13 280 242 117 40 chr6 16064225 16064525 -173215029 + MLT1G1 LTR MaLR 3 351 -204 289 262 74 8 chr6 16064525 16064647 -173214907 + MLT1G1 LTR MaLR 462 591 -4 208 339 57 24 chr6 16064676 16064800 -173214754 + MIR SINE MIR 17 144 -118 189 107 0 0 chr6 16064927 16064955 -173214599 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr6 16064978 16065000 -173214554 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2165 97 3 0 chr6 16065003 16065291 -173214263 - AluSp SINE Alu -24 289 1 370 235 137 78 chr6 16065378 16065582 -173213972 + MLT1K LTR MaLR 369 584 -4 211 263 18 0 chr6 16066123 16066180 -173213374 + MIR SINE MIR 95 152 -56 2145 113 0 3 chr6 16066180 16066482 -173213072 + AluSq SINE Alu 1 301 -12 2212 170 22 3 chr6 16066556 16066914 -173212640 + MLT1A1 LTR MaLR 1 365 0 207 246 185 0 chr6 16067075 16067140 -173212414 - MIR SINE MIR -12 250 174 8461 125 72 69 chr6 16067180 16068467 -173211087 + L1PA10 LINE L1 4026 5329 -839 2071 104 3 10 chr6 16068467 16068766 -173210788 + AluSx SINE Alu 1 297 -15 8461 125 72 69 chr6 16068766 16069603 -173209951 + L1PA10 LINE L1 5329 6163 -5 619 264 81 30 chr6 16069824 16070222 -173209332 + L1ME3A LINE L1 5727 6169 -1 2282 66 0 53 chr6 16070485 16070803 -173208751 - AluY SINE Alu -10 301 1 660 217 142 9 chr6 16071032 16071244 -173208310 + MIR SINE MIR 5 244 -18 435 324 35 12 chr6 16071508 16071678 -173207876 - MIR SINE MIR -88 174 1 620 215 30 0 chr6 16072075 16072210 -173207344 - MER77 LTR ERV1 0 605 467 2126 92 7 26 chr6 16072214 16072517 -173207037 + AluSq SINE Alu 1 297 -16 267 217 0 0 chr6 16072517 16072577 -173206977 + GA-rich Low_complexity Low_complexity 1 60 0 1011 180 14 104 chr6 16072577 16072855 -173206699 - LTR37B LTR ERV1 -159 309 57 1397 169 33 113 chr6 16072879 16073276 -173206278 + MLT1A1 LTR MaLR 1 365 0 233 252 98 70 chr6 16074035 16074178 -173205376 - MER5A DNA MER1_type -24 165 19 860 225 107 0 chr6 16074448 16074626 -173204928 + MER58A DNA MER1_type 2 198 -26 1487 256 43 34 chr6 16074693 16074855 -173204699 + L1ME1 LINE L1 5259 5418 -748 2124 116 3 28 chr6 16074855 16075175 -173204379 + AluSx SINE Alu 1 312 0 1487 256 43 34 chr6 16075175 16075306 -173204248 + L1ME1 LINE L1 5418 5546 -620 2171 109 0 0 chr6 16075306 16075609 -173203945 - AluSx SINE Alu -9 303 1 1487 256 43 34 chr6 16075609 16075760 -173203794 + L1ME1 LINE L1 5546 5708 -458 929 112 0 8 chr6 16075781 16075915 -173203639 - FLAM_C SINE Alu -6 137 5 1692 187 111 28 chr6 16075920 16076212 -173203342 + L1ME1 LINE L1 5702 6041 -125 2086 126 7 0 chr6 16076212 16076513 -173203041 + AluSx SINE Alu 1 303 -9 1692 187 111 28 chr6 16076513 16076643 -173202911 + L1ME1 LINE L1 6041 6159 -7 1246 213 22 0 chr6 16076655 16076932 -173202622 + L1MC4 LINE L1 6935 7217 -825 1090 184 25 72 chr6 16076937 16077215 -173202339 + AluJo SINE Alu 1 265 -47 964 216 51 0 chr6 16077229 16077469 -173202085 + L1MC4a LINE L1 7127 7554 -441 1989 125 0 0 chr6 16077482 16077763 -173201791 + AluSx SINE Alu 1 281 -31 2406 97 132 5 chr6 16078863 16079243 -173200311 + MSTA LTR MaLR 1 428 0 3221 198 80 39 chr6 16081478 16082607 -173196947 + L1M3 LINE L1 4366 5555 -613 1144 157 44 39 chr6 16082607 16082667 -173196887 + AluJb SINE Alu 83 141 -171 2260 99 0 0 chr6 16082667 16082970 -173196584 + AluSq SINE Alu 1 303 -10 1144 157 44 39 chr6 16082970 16083138 -173196416 + AluJb SINE Alu 141 312 0 3735 149 135 34 chr6 16083479 16084825 -173194729 + pTR5 LTR ERV1 741 2606 0 2115 100 3 7 chr6 16085691 16085991 -173193563 + AluSq SINE Alu 1 299 -14 737 176 0 23 chr6 16086871 16087002 -173192552 - FLAM_C SINE Alu -3 130 3 2090 71 41 20 chr6 16087233 16087528 -173192026 + AluY SINE Alu 1 301 -10 2161 106 0 3 chr6 16087549 16087850 -173191704 + AluSx SINE Alu 1 300 -12 2052 121 3 0 chr6 16088406 16088703 -173190851 + AluSx SINE Alu 1 298 -14 519 274 92 24 chr6 16089795 16089959 -173189595 - MER69A DNA AcHobo -2 175 1 321 356 75 6 chr6 16090443 16090617 -173188937 + MIR3 SINE MIR 7 192 -16 304 219 12 37 chr6 16091631 16091713 -173187841 + MER116 DNA Mariner 1 80 0 1144 161 18 40 chr6 16091845 16092069 -173187485 + MER20 DNA MER1_type 1 219 0 231 200 0 0 chr6 16093957 16093997 -173185557 - MIR SINE MIR -101 161 122 2148 104 7 0 chr6 16094124 16094433 -173185121 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr6 16094538 16094566 -173184988 + (TG)n Simple_repeat Simple_repeat 1 28 0 2107 103 33 0 chr6 16094668 16094970 -173184584 + AluSx SINE Alu 1 312 0 2215 72 20 0 chr6 16095345 16095638 -173183916 + AluY SINE Alu 1 299 -12 2268 87 0 3 chr6 16095976 16096276 -173183278 + AluSq SINE Alu 1 299 -14 1681 135 7 4 chr6 16096386 16096684 -173182870 + AluJo SINE Alu 11 309 0 801 214 96 123 chr6 16096820 16097260 -173182294 + MER113 DNA MER1_type? 20 447 -74 2310 82 0 0 chr6 16097511 16097815 -173181739 - AluY SINE Alu -7 304 1 2211 113 0 0 chr6 16098567 16098876 -173180678 - AluSx SINE Alu -1 311 3 498 201 73 62 chr6 16098986 16099165 -173180389 - MER34B LTR ERV1 0 565 385 2212 105 0 0 chr6 16099176 16099472 -173180082 + AluSx SINE Alu 1 296 -16 759 203 0 0 chr6 16099735 16099863 -173179691 + FLAM_C SINE Alu 1 128 -5 911 127 0 15 chr6 16099927 16100061 -173179493 - FLAM_C SINE Alu -1 132 1 236 200 109 0 chr6 16100087 16100142 -173179412 - MER34C LTR ERV1 -485 100 40 255 61 0 0 chr6 16100460 16100493 -173179061 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1880 129 4 0 chr6 16101291 16101594 -173177960 - AluSx SINE Alu 0 304 1 22 35 0 0 chr6 16101741 16101770 -173177784 + AT_rich Low_complexity Low_complexity 1 29 0 1212 249 90 21 chr6 16102451 16102885 -173176669 + MER110A LTR ERV1 1 464 -4 998 99 0 0 chr6 16103011 16103142 -173176412 + AluSq/x SINE Alu 1 131 -182 1981 128 10 0 chr6 16103149 16103275 -173176279 + AluSx SINE Alu 1 124 -188 279 0 0 0 chr6 16103275 16103306 -173176248 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1981 128 10 0 chr6 16103306 16103475 -173176079 + AluSx SINE Alu 124 299 -13 236 193 0 18 chr6 16103684 16103741 -173175813 - L1MA5 LINE L1 -2 6298 6243 * 922 140 9 9 chr6 16103718 16103889 -173175665 - L1MA5 LINE L1 -10 6302 6128 1448 184 44 0 chr6 16103891 16104163 -173175391 + AluJo SINE Alu 11 294 -18 5392 152 17 32 chr6 16104174 16105209 -173174345 - L1MA5 LINE L1 -152 6148 5146 2273 83 7 0 chr6 16105209 16105510 -173174044 - AluSc SINE Alu -6 303 1 5392 152 17 32 chr6 16105510 16105644 -173173910 - L1MA5 LINE L1 -1154 5146 5012 981 152 21 11 chr6 16105644 16105835 -173173719 - L1MC2 LINE L1 -15 6329 6137 2644 149 97 166 chr6 16105835 16105914 -173173640 - L1MC3 LINE L1 -191 7594 7511 381 43 0 0 chr6 16105914 16105961 -173173593 + (CA)n Simple_repeat Simple_repeat 2 48 0 1869 142 0 29 chr6 16105970 16106280 -173173274 - AluJb SINE Alu -10 302 2 2644 149 97 166 chr6 16106280 16106629 -173172925 - L1MC3 LINE L1 -282 7503 7131 267 267 0 13 chr6 16106629 16106704 -173172850 - MLT1F1 LTR MaLR -453 114 41 2644 149 97 166 chr6 16106704 16107088 -173172466 - L1MC3 LINE L1 -654 7131 6759 2034 102 7 0 chr6 16107294 16107579 -173171975 - AluSp SINE Alu -15 298 12 28 29 0 0 chr6 16107834 16107869 -173171685 + AT_rich Low_complexity Low_complexity 1 35 0 1562 159 43 40 chr6 16107869 16108170 -173171384 + AluJo SINE Alu 1 302 -10 970 219 4 62 chr6 16108175 16108417 -173171137 - MIR SINE MIR -27 235 8 2409 44 14 3 chr6 16108543 16108840 -173170714 - AluY SINE Alu -11 300 1 1665 162 10 0 chr6 16109297 16109593 -173169961 + AluSx SINE Alu 1 299 -13 1827 140 3 3 chr6 16110292 16110578 -173168976 + AluJb SINE Alu 1 286 -26 2097 93 17 0 chr6 16110583 16110873 -173168681 - AluSg SINE Alu -15 295 1 200 152 0 0 chr6 16111316 16111349 -173168205 - MIR SINE MIR -63 145 113 465 193 111 117 chr6 16111619 16111790 -173167764 - MER5A DNA MER1_type -14 175 6 2172 147 18 33 chr6 16111879 16112275 -173167279 + MLT1B LTR MaLR 1 390 0 238 253 207 23 chr6 16112319 16112406 -173167148 + MIR SINE MIR 33 135 -73 2159 108 0 0 chr6 16112515 16112811 -173166743 + AluSx SINE Alu 1 296 -16 390 347 103 35 chr6 16112849 16113189 -173166365 + L1ME LINE L1 61 423 -5647 2568 100 34 78 chr6 16113298 16113395 -173166159 + MSTC LTR MaLR 1 101 -327 1901 151 0 3 chr6 16113395 16113694 -173165860 + AluSx SINE Alu 1 298 -14 2568 100 34 78 chr6 16113694 16114044 -173165510 + MSTC LTR MaLR 101 428 0 1707 205 81 10 chr6 16114214 16114623 -173164931 + Charlie4a DNA MER1_type 17 454 -54 2035 120 17 0 chr6 16114625 16114926 -173164628 - AluSx SINE Alu -6 306 1 4888 83 8 67 chr6 16115431 16115616 -173163938 + LTR8 LTR ERV1 1 195 -496 1872 132 0 0 chr6 16115616 16115888 -173163666 + AluSx SINE Alu 28 299 -13 4888 83 8 67 chr6 16115888 16116436 -173163118 + LTR8 LTR ERV1 195 691 0 237 74 37 19 chr6 16116631 16116685 -173162869 + (TTATA)n Simple_repeat Simple_repeat 1 55 0 197 298 39 96 chr6 16116761 16116865 -173162689 + MIR3 SINE MIR 96 193 -15 1591 137 0 12 chr6 16116959 16117250 -173162304 - AluSx SINE Alu 0 331 44 1542 93 9 9 chr6 16117268 16117493 -173162061 - AluSc SINE Alu -2 307 83 1876 132 4 4 chr6 16118134 16118415 -173161139 - AluSp SINE Alu -32 281 1 801 121 7 54 chr6 16118777 16118926 -173160628 + FLAM_C SINE Alu 2 143 0 971 149 54 6 chr6 16119389 16119557 -173159997 - AluSg/x SINE Alu -3 307 132 2294 92 3 0 chr6 16119557 16119861 -173159693 - AluSp SINE Alu -7 306 2 183 156 0 0 chr6 16120164 16120196 -173159358 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1106 153 6 0 chr6 16120198 16120375 -173159179 - AluJo SINE Alu -30 282 105 244 154 39 58 chr6 16120378 16120430 -173159124 + HSMAR1 DNA Mariner 1 51 -1236 672 147 0 0 chr6 16120436 16120538 -173159016 - AluJo SINE Alu -210 102 1 2322 169 4 50 chr6 16120605 16120963 -173158591 + L1M3 LINE L1 5369 5703 -480 2111 107 7 0 chr6 16120963 16121263 -173158291 + AluSq SINE Alu 1 302 -11 2322 169 4 50 chr6 16121263 16121361 -173158193 + L1M3 LINE L1 5703 5804 -379 2051 102 6 22 chr6 16121376 16121691 -173157863 + AluY SINE Alu 1 310 -1 488 241 106 0 chr6 16121933 16122074 -173157480 + MER3 DNA MER1_type 5 160 -49 1004 144 11 17 chr6 16122074 16122255 -173157299 - AluSg/x SINE Alu -3 307 128 276 171 0 0 chr6 16122657 16122698 -173156856 - FRAM/FAM SINE Alu -111 64 24 2079 104 3 3 chr6 16122709 16122998 -173156556 - AluSx SINE Alu -23 289 1 610 39 0 0 chr6 16123160 16123237 -173156317 - AluS SINE Alu -234 78 2 1690 120 34 8 chr6 16123737 16124003 -173155551 - AluSx SINE Alu 0 312 40 2120 97 3 3 chr6 16124013 16124312 -173155242 - AluY SINE Alu -12 299 1 1619 115 11 65 chr6 16124518 16124796 -173154758 + LTR48B LTR ERV1 1 263 -381 249 25 0 0 chr6 16124785 16124825 -173154729 + Alu SINE Alu 261 300 0 * 907 120 8 0 chr6 16124863 16124988 -173154566 - FLAM_C SINE Alu -3 130 5 2552 49 0 0 chr6 16125141 16125446 -173154108 + AluY SINE Alu 1 305 -6 2035 62 12 4 chr6 16125446 16125704 -173153850 + AluY SINE Alu 38 297 -14 227 224 0 0 chr6 16126002 16126051 -173153503 + L2 LINE L2 3224 3272 0 413 278 77 35 chr6 16127523 16127692 -173151862 + MER5A DNA MER1_type 7 182 -7 717 136 0 0 chr6 16127699 16127802 -173151752 + AluJo SINE Alu 2 104 -208 581 155 25 1 chr6 16127802 16127918 -173151636 + MER41A LTR ERV1 3 127 -427 23 0 0 0 chr6 16127999 16128022 -173151532 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr6 16128038 16128077 -173151477 + AT_rich Low_complexity Low_complexity 1 39 0 2967 149 2 4 chr6 16128080 16128562 -173150992 + MER41B LTR ERV1 148 628 -7 812 212 20 10 chr6 16128562 16128765 -173150789 + AluJo SINE Alu 93 297 -15 265 222 111 71 chr6 16128930 16129029 -173150525 - MER5A DNA MER1_type -78 111 9 309 280 25 42 chr6 16129443 16129561 -173149993 - L2 LINE L2 -15 3257 3142 2316 87 7 0 chr6 16129920 16130229 -173149325 + AluSq SINE Alu 1 311 -2 24 0 0 0 chr6 16130264 16130288 -173149266 + AT_rich Low_complexity Low_complexity 1 24 0 1374 229 41 85 chr6 16130298 16130865 -173148689 - MER34 LTR ERV1 0 542 1 2166 227 66 43 chr6 16131217 16131790 -173147764 + Zaphod DNA AcHobo 185 779 -3252 2053 114 13 0 chr6 16131790 16132097 -173147457 - AluSx SINE Alu -1 311 1 2166 227 66 43 chr6 16132097 16132238 -173147316 + Zaphod DNA AcHobo 779 915 -3116 1538 150 24 0 chr6 16132238 16132484 -173147070 - Tigger2 DNA MER2_type 0 2718 2467 1476 74 0 15 chr6 16132543 16132746 -173146808 - AluY SINE Alu -109 202 3 280 237 26 0 chr6 16132855 16132931 -173146623 + GA-rich Low_complexity Low_complexity 1 78 0 1065 82 0 0 chr6 16133133 16133267 -173146287 + AluSq/x SINE Alu 1 134 -179 2009 99 10 7 chr6 16133269 16133563 -173145991 + AluSx SINE Alu 1 295 -17 289 293 196 0 chr6 16133951 16134084 -173145470 + MIR3 SINE MIR 41 199 -9 294 209 38 67 chr6 16134131 16134236 -173145318 + LTR48B LTR ERV1 1 102 -542 811 205 97 62 chr6 16134236 16134495 -173145059 + MER39 LTR ERV1 325 592 -115 828 138 0 22 chr6 16134495 16134633 -173144921 - FLAM_C SINE Alu -6 137 3 364 202 57 57 chr6 16134634 16134758 -173144796 + MER39 LTR ERV1 417 705 -2 2215 116 0 0 chr6 16135447 16135758 -173143796 + AluSq SINE Alu 1 311 -2 1919 113 55 0 chr6 16135983 16136276 -173143278 + AluSx SINE Alu 1 309 -3 1846 131 44 0 chr6 16136951 16137413 -173142141 + AluSx SINE Alu 1 475 0 2259 103 0 0 chr6 16138135 16138445 -173141109 + AluSx SINE Alu 3 312 0 227 143 71 36 chr6 16138659 16138715 -173140839 - MER20B DNA MER1_type -712 71 14 2286 89 0 3 chr6 16138798 16139101 -173140453 + AluSc SINE Alu 1 302 -7 1975 133 20 0 chr6 16139433 16139727 -173139827 - AluSx SINE Alu -12 300 1 803 57 0 9 chr6 16139802 16139907 -173139647 + AluSq/x SINE Alu 2 105 -207 967 165 21 0 chr6 16140106 16140294 -173139260 + AluSc SINE Alu 96 287 -22 1095 114 6 6 chr6 16140382 16140549 -173139005 + AluSc SINE Alu 128 294 -15 2014 122 0 41 chr6 16140616 16140751 -173138803 + AluSg SINE Alu 1 140 -170 2342 84 3 0 chr6 16140751 16141061 -173138493 + AluSp SINE Alu 1 311 -2 2014 122 0 41 chr6 16141061 16141245 -173138309 + AluSg SINE Alu 140 307 -3 1033 164 27 170 chr6 16141285 16141615 -173137939 - MLT1A1 LTR MaLR 0 365 83 3242 110 26 46 chr6 16141616 16141685 -173137869 + L1MB2 LINE L1 5631 5700 -471 1986 141 20 0 chr6 16141685 16141991 -173137563 - AluSx SINE Alu 0 312 1 3242 110 26 46 chr6 16141991 16142420 -173137134 + L1MB2 LINE L1 5700 6120 -51 2196 84 6 26 chr6 16142420 16142731 -173136823 + AluSx SINE Alu 1 305 -7 3242 110 26 46 chr6 16142731 16142776 -173136778 + L1MB2 LINE L1 6120 6164 -7 189 372 13 0 chr6 16142810 16142888 -173136666 - L2 LINE L2 -214 3058 2980 346 262 111 23 chr6 16143279 16143451 -173136103 + MER2 DNA MER2_type 159 345 0 189 0 0 0 chr6 16143772 16143793 -173135761 + (A)n Simple_repeat Simple_repeat 1 21 0 2234 145 60 0 chr6 16144018 16144398 -173135156 + MER57A LTR ERV1 1 403 0 1278 128 0 5 chr6 16144569 16144765 -173134789 - AluSg SINE Alu -2 308 114 2078 179 74 31 chr6 16144765 16145223 -173134331 - LTR2B LTR ERV1 0 490 13 576 97 269 0 chr6 16145228 16145321 -173134233 - AluSg SINE Alu -190 120 3 546 199 226 22 chr6 16145441 16145622 -173133932 - MIR SINE MIR -3 259 42 1553 224 23 11 chr6 16145622 16145970 -173133584 - MLT1C LTR MaLR 0 467 116 2138 101 13 0 chr6 16145970 16146276 -173133278 - AluSp SINE Alu -3 310 1 1350 195 3 69 chr6 16146294 16146628 -173132926 - AluJo SINE Alu 0 312 1 3477 182 15 24 chr6 16146638 16146931 -173132623 - L1MB4 LINE L1 -1 6179 5885 1967 99 49 0 chr6 16146931 16147215 -173132339 - AluSq SINE Alu -12 301 4 3477 182 15 24 chr6 16147215 16147635 -173131919 - L1MB4 LINE L1 -295 5885 5472 726 183 7 29 chr6 16147635 16147772 -173131782 - FLAM_C SINE Alu -8 135 2 1557 155 9 51 chr6 16147806 16148122 -173131432 + AluJo SINE Alu 1 303 -9 279 96 0 159 chr6 16148139 16148200 -173131354 - MLT1C LTR MaLR -265 125 80 1855 76 13 83 chr6 16148200 16148502 -173131052 - AluSp SINE Alu -32 281 1 279 96 0 159 chr6 16148502 16148517 -173131037 - MLT1C LTR MaLR -310 80 64 2291 104 0 0 chr6 16148738 16149047 -173130507 - AluSg SINE Alu -1 309 1 2052 109 27 0 chr6 16149864 16150158 -173129396 - AluSx SINE Alu -8 304 3 2063 75 0 0 chr6 16150247 16150513 -173129041 - AluSc SINE Alu -12 297 32 1641 135 49 118 chr6 16150557 16150988 -173128566 + MER57A LTR ERV1 3 403 0 813 198 169 21 chr6 16151171 16151255 -173128299 + AluJo SINE Alu 11 81 -231 2053 103 7 3 chr6 16151255 16151545 -173128009 - AluSp SINE Alu -22 291 1 813 198 169 21 chr6 16151545 16151564 -173127990 + AluJo SINE Alu 81 96 -216 216 0 0 0 chr6 16151564 16151588 -173127966 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 813 198 169 21 chr6 16151588 16151726 -173127828 + AluJo SINE Alu 96 289 -23 2070 132 0 13 chr6 16151881 16152191 -173127363 + AluJo SINE Alu 3 308 -4 313 270 131 7 chr6 16153200 16153338 -173126216 - MIR SINE MIR -80 128 18 2604 153 2 42 chr6 16154579 16154622 -173124932 - MER50 LTR ERV1 -25 709 666 2045 116 3 0 chr6 16154622 16154924 -173124630 - AluSx SINE Alu -9 303 1 2604 153 2 42 chr6 16154924 16155331 -173124223 - MER50 LTR ERV1 -68 666 277 1762 95 28 60 chr6 16155387 16155545 -173124009 - MER50 LTR ERV1 -459 275 127 1729 136 33 7 chr6 16155545 16155848 -173123706 - AluSc SINE Alu 0 310 1 1762 95 28 60 chr6 16155848 16155972 -173123582 - MER50 LTR ERV1 -607 127 1 294 194 0 0 chr6 16156805 16156877 -173122677 + (TG)n Simple_repeat Simple_repeat 2 73 0 1712 152 11 105 chr6 16156879 16157261 -173122293 - MER7A DNA MER2_type -1 345 2 398 313 65 13 chr6 16157277 16157507 -173122047 - L1MC4 LINE L1 -112 7930 7689 2266 98 7 0 chr6 16157660 16157965 -173121589 + AluSq SINE Alu 1 307 -6 194 281 0 94 chr6 16158230 16158295 -173121259 + L2 LINE L2 3227 3282 -31 2239 98 7 0 chr6 16158295 16158601 -173120953 + AluSx SINE Alu 3 310 -2 194 281 0 94 chr6 16158601 16158631 -173120923 + L2 LINE L2 3282 3313 0 315 0 0 0 chr6 16158732 16158767 -173120787 + (TA)n Simple_repeat Simple_repeat 1 35 0 1840 114 96 0 chr6 16159509 16159789 -173119765 - AluSg SINE Alu -3 307 1 23 33 0 0 chr6 16159848 16159878 -173119676 + AT_rich Low_complexity Low_complexity 1 30 0 780 200 7 7 chr6 16159878 16160023 -173119531 - FRAM SINE Alu -31 145 1 337 353 43 0 chr6 16161076 16161215 -173118339 + MIR SINE MIR 88 232 -30 415 156 0 0 chr6 16161241 16161305 -173118249 - MSTA LTR MaLR 0 428 365 580 167 0 0 chr6 16161305 16161395 -173118159 + AluJb SINE Alu 210 299 -13 581 250 0 9 chr6 16161407 16161567 -173117987 + FLAM_A SINE Alu 2 160 0 2703 138 40 26 chr6 16161587 16162046 -173117508 + L1MB2 LINE L1 5657 6125 -46 2106 105 7 0 chr6 16162046 16162342 -173117212 - AluSp SINE Alu -15 298 1 2703 138 40 26 chr6 16162342 16162376 -173117178 + L1MB2 LINE L1 6125 6157 -14 2153 105 0 13 chr6 16162512 16162818 -173116736 + AluSx SINE Alu 2 303 -9 24 103 0 0 chr6 16162864 16162951 -173116603 + AT_rich Low_complexity Low_complexity 1 87 0 1630 190 0 3 chr6 16163129 16163429 -173116125 - AluJb SINE Alu -13 299 1 209 256 227 64 chr6 16164664 16164836 -173114718 - L2 LINE L2 -13 3300 3101 745 145 0 0 chr6 16164942 16165059 -173114495 + FLAM_C SINE Alu 27 143 0 2028 123 3 0 chr6 16165072 16165365 -173114189 + AluSx SINE Alu 1 294 -18 820 206 50 0 chr6 16165378 16165558 -173113996 + AluSg/x SINE Alu 121 309 -1 795 271 48 0 chr6 16165578 16165829 -173113725 - MLT1J LTR MaLR -248 263 1 275 300 29 73 chr6 16166276 16166435 -173113119 + MIR SINE MIR 33 183 -77 1227 184 37 108 chr6 16166455 16166524 -173113030 - MLT1E3 LTR MaLR 0 624 552 2354 63 0 3 chr6 16166524 16166823 -173112731 + AluY SINE Alu 1 298 -13 1227 184 37 108 chr6 16166823 16166837 -173112717 - MLT1E3 LTR MaLR -72 552 539 1840 129 3 49 chr6 16166837 16167025 -173112529 - AluJb SINE Alu -1 311 143 2398 67 0 13 chr6 16167025 16167340 -173112214 - AluY SINE Alu 0 311 1 1840 129 3 49 chr6 16167340 16167477 -173112077 - AluJb SINE Alu -169 143 1 1227 184 37 108 chr6 16167477 16167745 -173111809 - MLT1E3 LTR MaLR -85 539 297 711 121 0 0 chr6 16167845 16167944 -173111610 + AluJ/FLAM SINE Alu 2 100 -212 393 253 149 32 chr6 16168006 16168160 -173111394 + MIR SINE MIR 20 191 -71 192 217 0 0 chr6 16168261 16168307 -173111247 + CT-rich Low_complexity Low_complexity 4 49 0 2635 94 0 121 chr6 16168356 16168440 -173111114 - Tigger2 DNA MER2_type -1 2717 2624 1714 170 0 3 chr6 16168440 16168734 -173110820 - AluJb SINE Alu -19 293 1 2635 94 0 121 chr6 16168734 16168746 -173110808 - Tigger2 DNA MER2_type -94 2624 2612 2066 105 3 3 chr6 16168746 16169042 -173110512 - AluSg SINE Alu -14 296 1 2635 94 0 121 chr6 16169042 16169341 -173110213 - Tigger2 DNA MER2_type -106 2612 2386 2288 76 0 10 chr6 16169341 16169655 -173109899 - AluY SINE Alu 0 311 1 2635 94 0 121 chr6 16169655 16169735 -173109819 - Tigger2 DNA MER2_type -332 2386 2298 490 100 0 14 chr6 16169741 16169811 -173109743 - Tigger2 DNA MER2_type -2649 69 1 1595 152 44 34 chr6 16170965 16171262 -173108292 - AluJo SINE Alu -11 301 2 667 229 0 0 chr6 16171345 16171463 -173108091 + FLAM_A SINE Alu 5 122 -11 2196 90 3 0 chr6 16171466 16171767 -173107787 - AluSq SINE Alu -11 302 1 27 0 0 0 chr6 16171767 16171794 -173107760 + AT_rich Low_complexity Low_complexity 1 27 0 340 247 60 73 chr6 16171957 16172107 -173107447 - MLT1J LTR MaLR 0 511 303 * 445 275 140 17 chr6 16172104 16172282 -173107272 - MLT1J LTR MaLR -311 200 1 412 329 71 6 chr6 16172400 16172570 -173106984 + MIR3 SINE MIR 18 198 -10 680 108 0 0 chr6 16172861 16172954 -173106600 - MER46B DNA MER2_type 0 236 144 349 126 78 6 chr6 16172954 16173121 -173106433 + (TA)n Simple_repeat Simple_repeat 1 179 0 1601 109 90 0 chr6 16173123 16173379 -173106175 - MER46B DNA MER2_type -82 154 1 378 100 0 33 chr6 16173331 16173391 -173106163 + MER46A DNA MER2_type 97 154 -82 * 1679 168 3 23 chr6 16173511 16173820 -173105734 - AluJo SINE Alu -9 303 1 283 86 0 0 chr6 16174130 16174165 -173105389 + U2 snRNA snRNA 1 35 -153 186 246 29 29 chr6 16174304 16174373 -173105181 - MIR SINE MIR -19 243 175 934 251 81 79 chr6 16174406 16174496 -173105058 + MLT1J LTR MaLR 17 105 -406 2127 90 0 14 chr6 16174496 16174819 -173104735 - AluSq SINE Alu 0 319 1 934 251 81 79 chr6 16174819 16175221 -173104333 + MLT1J LTR MaLR 105 511 0 1711 149 0 43 chr6 16175253 16175554 -173104000 + AluJo SINE Alu 1 288 -24 317 205 181 0 chr6 16175570 16175653 -173103901 - MIR SINE MIR -124 138 41 1952 132 3 7 chr6 16176631 16176926 -173102628 - AluSx SINE Alu -18 294 1 805 306 113 21 chr6 16176963 16177398 -173102156 + LTR33 LTR ERVL 40 514 -7 1837 107 28 77 chr6 16177569 16177707 -173101847 + AluSx SINE Alu 1 144 -168 1860 115 30 27 chr6 16177707 16178003 -173101551 + AluSx SINE Alu 3 299 -13 1837 107 28 77 chr6 16178003 16178191 -173101363 + AluSx SINE Alu 144 311 -1 2338 156 98 48 chr6 16179037 16179115 -173100439 + L1MB2 LINE L1 5587 5660 -511 2377 63 0 7 chr6 16179115 16179414 -173100140 + AluY SINE Alu 1 297 -14 2325 87 0 3 chr6 16179422 16179731 -173099823 + AluSg SINE Alu 1 308 -2 2338 156 98 48 chr6 16179731 16180052 -173099502 + L1MB2 LINE L1 5666 6029 -142 2151 125 30 25 chr6 16180052 16180419 -173099135 + L1PA14 LINE L1 5792 6160 -1 2338 156 98 48 chr6 16180419 16180527 -173099027 + L1MB2 LINE L1 6029 6130 -41 2197 109 0 10 chr6 16180533 16180845 -173098709 + AluSx SINE Alu 4 312 0 259 130 87 0 chr6 16180846 16180892 -173098662 + L1MB2 LINE L1 6115 6164 -7 249 269 192 0 chr6 16180902 16180980 -173098574 + MIR SINE MIR 159 251 -11 1256 194 51 75 chr6 16181154 16181526 -173098028 + MLT1A1 LTR MaLR 3 365 0 278 352 0 0 chr6 16181728 16181819 -173097735 - L2 LINE L2 0 3313 3223 2189 87 0 20 chr6 16181819 16182119 -173097435 + AluSq SINE Alu 1 294 -19 2141 103 0 10 chr6 16182442 16182742 -173096812 - AluSg SINE Alu -13 297 1 2156 94 3 3 chr6 16183282 16183580 -173095974 + AluSx SINE Alu 1 298 -14 367 95 108 27 chr6 16183994 16184068 -173095486 - MADE1 DNA Mariner 0 80 1 * 1054 171 87 66 chr6 16184066 16184088 -173095466 - MER33 DNA MER1_type -2278 307 287 1867 124 52 0 chr6 16184088 16184379 -173095175 - AluSq SINE Alu -7 306 1 1054 171 87 66 chr6 16184379 16184642 -173094912 - MER33 DNA MER1_type -2298 287 16 294 284 108 34 chr6 16184646 16184794 -173094760 + MIR3 SINE MIR 49 207 -1 333 208 104 66 chr6 16184871 16184977 -173094577 - L1ME4a LINE L1 -3 6118 6009 793 173 0 0 chr6 16184999 16185126 -173094428 + FLAM_A SINE Alu 1 127 -6 415 207 102 15 chr6 16186682 16186697 -173092857 - MLT1A2 LTR MaLR -232 158 146 2125 69 35 0 chr6 16186697 16186986 -173092568 + AluSx SINE Alu 1 299 -13 415 207 102 15 chr6 16186986 16187097 -173092457 - MLT1A2 LTR MaLR -244 146 42 246 279 36 36 chr6 16187097 16187208 -173092346 + MER34B LTR ERV1 5 115 -450 216 97 0 0 chr6 16187538 16187569 -173091985 + (TA)n Simple_repeat Simple_repeat 1 31 0 363 148 102 45 chr6 16187573 16187661 -173091893 + MER34 LTR ERV1 450 542 0 476 129 165 0 chr6 16188033 16188118 -173091436 + MER41C LTR ERV1 1 99 -455 2118 79 18 0 chr6 16188118 16188395 -173091159 - AluSq SINE Alu -2 311 30 1447 101 5 19 chr6 16188395 16188602 -173090952 - AluSx SINE Alu -108 204 1 3722 120 0 11 chr6 16188608 16189156 -173090398 + MER41B LTR ERV1 94 635 0 2008 115 10 22 chr6 16189481 16189795 -173089759 + AluSq SINE Alu 1 310 -3 356 0 23 0 chr6 16189852 16189896 -173089658 + (CA)n Simple_repeat Simple_repeat 1 45 0 242 222 0 19 chr6 16190602 16190656 -173088898 + CT-rich Low_complexity Low_complexity 5 57 0 836 178 24 24 chr6 16190959 16191128 -173088426 + MER20B DNA MER1_type 17 185 -34 2433 77 0 0 chr6 16191131 16191443 -173088111 + AluSx SINE Alu 1 312 0 2412 71 3 0 chr6 16191566 16191877 -173087677 + AluSq SINE Alu 2 313 0 230 248 173 45 chr6 16191954 16192087 -173087467 - MIR SINE MIR -82 180 31 2015 120 0 0 chr6 16192242 16192555 -173086999 + AluSc SINE Alu 1 309 0 2373 71 0 0 chr6 16192659 16192967 -173086587 + AluY SINE Alu 1 308 -3 1030 57 0 0 chr6 16192980 16193103 -173086451 + AluSq/x SINE Alu 1 123 -189 635 111 0 11 chr6 16193110 16193200 -173086354 + L1MD1 LINE L1 5504 5592 -767 1959 93 30 0 chr6 16193204 16193472 -173086082 + AluSg SINE Alu 1 276 -34 192 40 0 0 chr6 16193474 16193499 -173086055 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1198 174 0 43 chr6 16193525 16193760 -173085794 - AluJo SINE Alu -32 280 56 1955 188 38 46 chr6 16193763 16193800 -173085754 + L1MD1 LINE L1 5576 5612 -630 2028 119 0 13 chr6 16193800 16194102 -173085452 + AluSg SINE Alu 1 298 -12 1955 188 38 46 chr6 16194102 16194538 -173085016 + L1MD1 LINE L1 5612 6045 -197 1197 90 0 0 chr6 16194543 16194699 -173084855 + AluSg SINE Alu 49 204 -106 1039 187 36 0 chr6 16194700 16194919 -173084635 + L1MD1 LINE L1 6009 6235 -7 194 0 39 0 chr6 16194919 16194945 -173084609 + (TA)n Simple_repeat Simple_repeat 2 28 0 200 151 0 38 chr6 16194945 16194968 -173084586 + (TAGA)n Simple_repeat Simple_repeat 1 23 -28 2119 128 3 0 chr6 16194968 16195273 -173084281 + AluJo SINE Alu 1 306 -6 200 151 0 38 chr6 16195273 16195302 -173084252 + (TAGA)n Simple_repeat Simple_repeat 23 51 0 240 345 73 0 chr6 16196030 16196140 -173083414 - L2 LINE L2 -10 3262 3145 793 306 78 0 chr6 16196175 16196394 -173083160 + MIR SINE MIR 15 250 -12 881 217 116 98 chr6 16196481 16196838 -173082716 - MER4C LTR ERV1 0 695 156 1234 160 14 0 chr6 16196838 16197057 -173082497 + AluJb SINE Alu 84 305 -7 1220 148 3 172 chr6 16197062 16197446 -173082108 - MER4A LTR ERV1 -345 319 1 2403 52 0 16 chr6 16198205 16198513 -173081041 + AluY SINE Alu 1 303 -8 1780 173 0 6 chr6 16198744 16199056 -173080498 + AluJb SINE Alu 2 311 -1 5111 81 25 23 chr6 16199085 16199623 -173079931 - LTR8 LTR ERV1 0 691 150 2062 119 3 3 chr6 16199623 16199933 -173079621 + AluSx SINE Alu 1 310 -2 5111 81 25 23 chr6 16199933 16200084 -173079470 - LTR8 LTR ERV1 -541 150 1 297 241 35 11 chr6 16200451 16200538 -173079016 + GA-rich Low_complexity Low_complexity 5 93 0 820 218 33 90 chr6 16201435 16201604 -173077950 - MLT1B LTR MaLR -4 361 187 1200 181 52 38 chr6 16201604 16201892 -173077662 - AluJo SINE Alu -16 296 5 820 218 33 90 chr6 16201892 16202059 -173077495 - MLT1B LTR MaLR -178 187 12 1559 130 16 4 chr6 16202064 16202311 -173077243 - AluSq SINE Alu -63 250 1 3494 141 65 14 chr6 16202322 16202904 -173076650 - LTR9 LTR ERV1 0 612 1 693 161 0 9 chr6 16202918 16203030 -173076524 + AluJo/FLAM SINE Alu 9 119 -193 2102 123 0 0 chr6 16203032 16203325 -173076229 - AluSx SINE Alu -19 293 1 261 180 0 0 chr6 16203638 16203688 -173075866 + T-rich Low_complexity Low_complexity 1 50 0 196 255 0 0 chr6 16203790 16203841 -173075713 + L2 LINE L2 3263 3313 0 195 161 0 0 chr6 16204185 16204216 -173075338 - L2 LINE L2 -11 3261 3231 246 344 75 11 chr6 16204217 16204310 -173075244 - L2 LINE L2 -6 3307 3209 1621 183 0 22 chr6 16204493 16204805 -173074749 + AluJo SINE Alu 2 306 -6 2201 75 3 0 chr6 16204833 16205139 -173074415 + AluSp SINE Alu 1 307 0 659 188 0 0 chr6 16205139 16205256 -173074298 + AluSg/x SINE Alu 186 302 -10 302 239 14 0 chr6 16205878 16205949 -173073605 + MER116 DNA Mariner 5 76 -4 1049 156 0 0 chr6 16205997 16206164 -173073390 - FRAM SINE Alu -10 166 1 463 257 223 0 chr6 16206164 16206339 -173073215 - MIR SINE MIR -37 225 12 1714 152 14 3 chr6 16206603 16206893 -173072661 - AluJb SINE Alu -8 304 12 262 254 123 57 chr6 16207078 16207200 -173072354 - MIR SINE MIR -82 180 51 1889 139 20 3 chr6 16207954 16208249 -173071305 - AluJo SINE Alu -10 302 3 2063 116 3 19 chr6 16208386 16208704 -173070850 + AluSq SINE Alu 1 313 0 1711 147 0 0 chr6 16208989 16209254 -173070300 - AluSx SINE Alu -47 265 1 189 0 0 0 chr6 16209262 16209283 -173070271 + (T)n Simple_repeat Simple_repeat 1 21 0 718 172 16 0 chr6 16209295 16209417 -173070137 - FLAM_A SINE Alu -9 124 1 2137 104 10 0 chr6 16209497 16209795 -173069759 + AluSg SINE Alu 1 301 -9 1928 125 0 0 chr6 16209796 16210075 -173069479 - AluSx SINE Alu -31 281 3 435 261 72 31 chr6 16210090 16210285 -173069269 - MER113 DNA MER1_type? -209 312 110 278 290 139 16 chr6 16210287 16210532 -173069022 - L1MC5 LINE L1 -72 7889 7615 253 144 45 126 chr6 16210552 16210663 -173068891 - MER113 DNA MER1_type? -388 133 32 1315 86 0 0 chr6 16210720 16210894 -173068660 + AluSq SINE Alu 138 311 -2 2043 137 0 3 chr6 16210987 16211294 -173068260 + AluSx SINE Alu 1 306 -6 301 209 0 15 chr6 16211503 16211570 -173067984 - Tigger5 DNA MER2_type -16 2307 2242 * 435 200 0 0 chr6 16211560 16211635 -173067919 + Tigger5 DNA MER2_type 2242 2316 -7 369 157 129 0 chr6 16211638 16211708 -173067846 - Tigger5 DNA MER2_type -2244 79 1 518 305 14 7 chr6 16211791 16211932 -173067622 + MIR SINE MIR 26 167 -95 2136 113 0 3 chr6 16212247 16212547 -173067007 + AluSq SINE Alu 1 299 -14 326 224 0 0 chr6 16212742 16212809 -173066745 + MIR SINE MIR 196 262 0 251 169 15 46 chr6 16213119 16213184 -173066370 + LTR29 LTR ERV1 137 199 -423 * 1505 238 88 33 chr6 16213171 16213662 -173065892 + LTR48B LTR ERV1 91 608 -36 199 176 20 59 chr6 16214169 16214220 -173065334 - MIR3 SINE MIR 0 208 160 432 241 44 79 chr6 16214275 16214393 -173065161 + L1ME4a LINE L1 5576 5684 -437 2098 98 14 14 chr6 16214393 16214689 -173064865 - AluSx SINE Alu -16 296 1 432 241 44 79 chr6 16214689 16214798 -173064756 + L1ME4a LINE L1 5684 5795 -326 2036 117 0 0 chr6 16214842 16215124 -173064430 + AluSx SINE Alu 1 282 -30 227 236 75 38 chr6 16215315 16215421 -173064133 + L1ME4a LINE L1 6012 6121 0 1266 258 79 12 chr6 16215636 16216054 -173063500 + MLT1C LTR MaLR 22 467 0 888 158 48 0 chr6 16216179 16216325 -173063229 + AluJb SINE Alu 141 293 -19 2282 83 0 6 chr6 16216345 16216658 -173062896 + AluY SINE Alu 1 311 0 2133 65 8 0 chr6 16217466 16217728 -173061826 + HERVL LTR ERVL 4375 4638 -1016 2038 107 6 38 chr6 16218281 16218600 -173060954 - AluSx SINE Alu -3 309 1 234 0 0 0 chr6 16218600 16218626 -173060928 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 889 139 6 44 chr6 16218626 16218784 -173060770 - FRAM SINE Alu -29 147 1 2203 104 0 7 chr6 16219177 16219484 -173060070 + AluSx SINE Alu 1 305 -7 2039 127 0 0 chr6 16220645 16220944 -173058610 + AluSq SINE Alu 2 300 -13 494 76 25 0 chr6 16220946 16221025 -173058529 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 262 359 28 9 chr6 16221069 16221175 -173058379 + MIR SINE MIR 20 127 -81 8429 112 49 42 chr6 16221468 16222044 -173057510 - Tigger1 DNA MER2_type 0 2418 1848 2174 92 3 3 chr6 16222044 16222338 -173057216 + AluSg SINE Alu 1 294 -16 2152 122 3 0 chr6 16222348 16222659 -173056895 + AluSx SINE Alu 1 312 0 8429 112 49 42 chr6 16222659 16222767 -173056787 - Tigger1 DNA MER2_type -578 1840 1734 1721 139 51 14 chr6 16222767 16223061 -173056493 - AluSq SINE Alu -8 305 1 8429 112 49 42 chr6 16223061 16223771 -173055783 - Tigger1 DNA MER2_type -684 1734 1002 22 0 0 0 chr6 16223771 16223793 -173055761 + AT_rich Low_complexity Low_complexity 1 22 0 2155 128 0 0 chr6 16223835 16224184 -173055370 - AluSx SINE Alu 0 349 1 2148 98 0 25 chr6 16224203 16224521 -173055033 - AluSg SINE Alu 0 310 1 369 0 0 0 chr6 16224521 16224562 -173054992 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 236 224 0 0 chr6 16224605 16224654 -173054900 - Tigger1 DNA MER2_type -1407 1011 963 735 84 0 0 chr6 16224655 16224750 -173054804 + AluSp SINE Alu 2 96 -216 2073 87 35 0 chr6 16224750 16225039 -173054515 + AluSp SINE Alu 1 299 -14 1479 128 4 0 chr6 16225039 16225265 -173054289 + AluSp SINE Alu 82 309 -4 5674 128 15 81 chr6 16225268 16226046 -173053508 - Tigger1 DNA MER2_type -1448 970 143 1758 156 7 3 chr6 16226046 16226335 -173053219 + AluJb SINE Alu 1 290 -22 1993 106 3 11 chr6 16226342 16226624 -173052930 + AluSx SINE Alu 1 280 -32 222 23 45 45 chr6 16226625 16226669 -173052885 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5674 128 15 81 chr6 16226669 16226861 -173052693 - Tigger1 DNA MER2_type -2281 137 59 180 0 0 0 chr6 16226861 16226881 -173052673 + (GA)n Simple_repeat Simple_repeat 2 21 0 5674 128 15 81 chr6 16226881 16226937 -173052617 - Tigger1 DNA MER2_type -2359 59 1 902 193 17 80 chr6 16227354 16227593 -173051961 - MLT1A2 LTR MaLR 0 374 151 655 169 14 68 chr6 16227599 16227747 -173051807 - L1PA16 LINE L1 -22 6144 6005 722 181 12 50 chr6 16227752 16227773 -173051781 - MLT1A2 LTR MaLR -211 154 134 1867 181 48 14 chr6 16227773 16228126 -173051428 - MLT1A1 LTR MaLR 0 365 1 722 181 12 50 chr6 16228126 16228264 -173051290 - MLT1A2 LTR MaLR -231 134 1 211 256 336 40 chr6 16228264 16228389 -173051165 - MIR SINE MIR -99 163 2 2015 138 0 3 chr6 16228442 16228754 -173050800 + AluSx SINE Alu 1 311 -1 2191 86 0 13 chr6 16228790 16229091 -173050463 + AluSq SINE Alu 1 297 -16 953 211 54 5 chr6 16229125 16229329 -173050225 - MLT1C LTR MaLR -61 406 193 2243 119 0 0 chr6 16229369 16229681 -173049873 - AluSx SINE Alu 0 312 1 535 292 149 14 chr6 16229844 16230132 -173049422 - L2 LINE L2 -3 3269 2943 2166 108 3 0 chr6 16230191 16230498 -173049056 - AluSx SINE Alu -4 308 1 1606 158 70 0 chr6 16230501 16230786 -173048768 - AluJb SINE Alu -7 305 1 583 289 62 9 chr6 16231281 16231506 -173048048 + MER46C DNA MER2_type 3 239 -99 1621 183 0 3 chr6 16231902 16232186 -173047368 + AluJb SINE Alu 2 284 -28 787 174 54 27 chr6 16232218 16232367 -173047187 - FRAM SINE Alu -23 153 1 183 317 92 49 chr6 16232376 16232540 -173047014 + MIR SINE MIR 28 198 -64 1779 149 13 19 chr6 16232696 16233004 -173046550 - AluSx SINE Alu -6 306 1 26 0 0 0 chr6 16233009 16233035 -173046519 + AT_rich Low_complexity Low_complexity 1 26 0 816 115 0 31 chr6 16233035 16233165 -173046389 - FLAM_C SINE Alu -17 126 1 2396 53 0 13 chr6 16233283 16233587 -173045967 + AluY SINE Alu 1 300 -11 898 92 59 59 chr6 16233738 16233890 -173045664 - THE1C LTR MaLR -223 152 1 184 300 17 33 chr6 16234166 16234226 -173045328 + MER5A DNA MER1_type 84 142 -47 838 283 25 18 chr6 16234869 16235134 -173044420 + L2 LINE L2 3031 3300 -13 222 118 0 0 chr6 16235134 16235168 -173044386 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 838 283 25 18 chr6 16235168 16235181 -173044373 + L2 LINE L2 3300 3311 -2 284 272 136 22 chr6 16235892 16236076 -173043478 + MLT1K LTR MaLR 316 520 -68 231 36 0 0 chr6 16236079 16236107 -173043447 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1950 109 3 20 chr6 16236109 16236266 -173043288 - AluY SINE Alu -22 289 138 2440 57 0 13 chr6 16236266 16236581 -173042973 - AluY SINE Alu 0 311 1 1950 109 3 20 chr6 16236581 16236717 -173042837 - AluY SINE Alu -173 138 1 1834 140 18 0 chr6 16236723 16237009 -173042545 - AluSx SINE Alu -18 294 4 243 0 0 0 chr6 16237694 16237721 -173041833 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1979 132 6 28 chr6 16237725 16238043 -173041511 - AluSx SINE Alu -1 311 1 648 161 0 24 chr6 16238104 16238228 -173041326 - L1M1 LINE L1 -7431 134 14 2289 100 125 31 chr6 16238702 16239093 -173040461 + MSTA LTR MaLR 1 428 0 1029 275 123 37 chr6 16239093 16239639 -173039915 + MLT1L LTR MaLR 18 610 -5 331 184 103 11 chr6 16239654 16239741 -173039813 + MIR SINE MIR 158 252 -10 276 130 0 0 chr6 16240492 16240538 -173039016 + (CA)n Simple_repeat Simple_repeat 1 46 0 191 175 0 0 chr6 16241329 16241369 -173038185 + MIR SINE MIR 167 206 -56 348 153 0 111 chr6 16241465 16241537 -173038017 - AluJ/FLAM SINE Alu -238 64 1 2062 134 0 0 chr6 16241632 16241937 -173037617 - AluSx SINE Alu -7 305 1 1704 194 35 65 chr6 16243012 16243151 -173036403 - MLT1C LTR MaLR -6 461 319 3423 123 39 10 chr6 16243151 16243663 -173035891 - MER1A DNA MER1_type 0 527 1 1704 194 35 65 chr6 16243663 16243954 -173035600 - MLT1C LTR MaLR -148 319 43 1454 167 137 44 chr6 16243954 16244145 -173035409 - MLT1A2 LTR MaLR 0 374 202 2156 110 0 0 chr6 16244145 16244445 -173035109 + AluSx SINE Alu 1 300 -12 1454 167 137 44 chr6 16244445 16244595 -173034959 - MLT1A2 LTR MaLR -172 202 1 1704 194 35 65 chr6 16244595 16244621 -173034933 - MLT1C LTR MaLR -424 43 18 192 254 18 0 chr6 16245338 16245393 -173034161 - MIR SINE MIR -45 217 162 462 143 61 31 chr6 16245496 16245594 -173033960 + FLAM_A SINE Alu 27 127 -15 919 253 88 34 chr6 16245774 16246162 -173033392 + MLT1I LTR MaLR 1 409 0 1768 137 39 3 chr6 16246189 16246473 -173033081 - AluSx SINE Alu -18 294 1 286 267 19 38 chr6 16246829 16246934 -173032620 + MLT1K LTR MaLR 463 565 -23 1950 133 0 0 chr6 16246939 16247233 -173032321 - AluJb SINE Alu -5 307 14 2008 100 0 0 chr6 16247262 16247541 -173032013 + AluSx SINE Alu 34 312 0 1242 100 0 0 chr6 16247541 16247721 -173031833 + AluSg/x SINE Alu 131 310 -2 369 292 10 0 chr6 16247884 16247980 -173031574 - MIR3 SINE MIR -16 192 96 2399 72 3 0 chr6 16248704 16249009 -173030545 + AluSp SINE Alu 5 310 -3 2006 113 31 3 chr6 16249223 16249516 -173030038 + AluSx SINE Alu 1 301 -11 1863 157 0 3 chr6 16249781 16250087 -173029467 - AluJo SINE Alu -7 305 1 193 213 43 149 chr6 16250237 16250331 -173029223 + MIR SINE MIR 124 207 -55 198 0 0 0 chr6 16250502 16250524 -173029030 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 245 255 0 0 chr6 16250524 16250575 -173028979 - FLAM SINE Alu -17 116 66 2454 53 0 0 chr6 16250575 16250874 -173028680 + AluY SINE Alu 1 299 -12 1327 183 0 27 chr6 16250885 16251142 -173028412 - AluJo SINE Alu -62 250 1 2254 96 3 6 chr6 16251620 16251934 -173027620 - AluSp SINE Alu 0 313 1 2048 133 0 0 chr6 16251940 16252249 -173027305 - AluSx SINE Alu -3 309 1 1465 112 70 0 chr6 16252362 16252576 -173026978 + MER30 DNA MER1_type 1 229 -1 764 204 46 20 chr6 16252619 16252771 -173026783 + FRAM SINE Alu 1 156 -10 1591 101 86 34 chr6 16252803 16253250 -173026304 + AluSx SINE Alu 1 461 0 546 216 19 91 chr6 16253332 16253540 -173026014 + L1MD1 LINE L1 6035 6227 -15 1427 171 80 0 chr6 16253545 16253819 -173025735 + AluJb SINE Alu 1 296 -16 212 128 0 85 chr6 16253942 16253989 -173025565 + L2 LINE L2 3271 3313 0 2167 121 0 0 chr6 16254032 16254338 -173025216 + AluSc SINE Alu 1 306 -3 2071 131 0 0 chr6 16254343 16254648 -173024906 + AluSq SINE Alu 1 305 -8 746 223 146 5 chr6 16254650 16254870 -173024684 + MIR SINE MIR 12 262 0 1687 266 93 26 chr6 16255010 16255481 -173024073 - MLT1G1 LTR MaLR 0 595 84 1925 142 0 7 chr6 16255481 16255784 -173023770 - AluSx SINE Alu -11 301 1 1687 266 93 26 chr6 16255784 16255839 -173023715 - MLT1G1 LTR MaLR -511 84 34 796 139 9 0 chr6 16255839 16255954 -173023600 + MER74A LTR ERVL 1 116 -442 446 315 61 6 chr6 16256307 16256472 -173023082 - MIR3 SINE MIR -16 192 19 1915 138 40 0 chr6 16256680 16256978 -173022576 - AluSx SINE Alu 0 312 3 2148 109 6 6 chr6 16256992 16257304 -173022250 - AluSq SINE Alu -1 312 1 244 150 25 25 chr6 16257680 16257760 -173021794 + GA-rich Low_complexity Low_complexity 2 81 0 1182 128 0 0 chr6 16259470 16259649 -173019905 - AluSq SINE Alu 0 313 135 1747 166 0 10 chr6 16259689 16259996 -173019558 + AluJo SINE Alu 1 304 -8 322 299 111 14 chr6 16260001 16260145 -173019409 - MIR SINE MIR -14 248 91 2058 109 0 54 chr6 16260172 16260485 -173019069 - AluSx SINE Alu -16 296 1 2285 79 3 0 chr6 16260528 16260818 -173018736 - AluSp SINE Alu -18 295 5 230 261 114 23 chr6 16261191 16261279 -173018275 + LTR48B LTR ERV1 1 96 -548 * 1028 220 40 40 chr6 16261271 16261571 -173017983 + MER39 LTR ERV1 312 611 -96 1277 199 17 51 chr6 16261573 16261710 -173017844 + AluJo SINE Alu 1 141 -171 198 0 0 0 chr6 16261710 16261732 -173017822 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1277 199 17 51 chr6 16261732 16261886 -173017668 + AluJo SINE Alu 141 282 -30 2281 98 0 0 chr6 16261888 16262185 -173017369 - AluSx SINE Alu -13 299 3 28 0 0 0 chr6 16262197 16262225 -173017329 + AT_rich Low_complexity Low_complexity 1 28 0 2215 80 0 7 chr6 16262225 16262525 -173017029 + AluY SINE Alu 2 299 -12 2338 92 0 6 chr6 16262837 16263152 -173016402 + AluSq SINE Alu 1 313 0 312 206 205 12 chr6 16263155 16263270 -173016284 + MIR SINE MIR 46 181 -65 231 352 167 19 chr6 16263606 16263768 -173015786 - MIR SINE MIR -56 206 21 2227 60 0 7 chr6 16263842 16264155 -173015399 - AluY SINE Alu 0 311 1 2135 112 0 3 chr6 16264861 16265165 -173014389 + AluSx SINE Alu 1 303 -9 2061 78 60 0 chr6 16265172 16265453 -173014101 + AluSg SINE Alu 1 298 -12 497 228 0 88 chr6 16266031 16266086 -173013468 + MIR SINE MIR 96 154 -108 2162 113 0 0 chr6 16266086 16266388 -173013166 + AluSx SINE Alu 1 302 -10 497 228 0 88 chr6 16266388 16266468 -173013086 + MIR SINE MIR 154 219 -43 1801 113 22 7 chr6 16266599 16266874 -173012680 + AluSx SINE Alu 11 289 -23 27 62 0 0 chr6 16266874 16266922 -173012632 + AT_rich Low_complexity Low_complexity 1 48 0 1748 164 10 0 chr6 16267136 16267428 -173012126 + AluJo SINE Alu 1 295 -17 2211 68 0 42 chr6 16267605 16267912 -173011642 - AluY SINE Alu -17 294 1 257 236 0 90 chr6 16268026 16268073 -173011481 + L1ME4a LINE L1 5583 5620 -501 2267 89 0 7 chr6 16268073 16268377 -173011177 - AluSg SINE Alu -8 302 1 257 236 0 90 chr6 16268377 16268418 -173011136 + L1ME4a LINE L1 5620 5663 -458 277 236 97 42 chr6 16268497 16268641 -173010913 + L1ME4a LINE L1 5778 5929 -192 25 31 0 0 chr6 16268641 16268673 -173010881 + AT_rich Low_complexity Low_complexity 1 32 0 985 70 8 0 chr6 16268680 16268808 -173010746 - AluY SINE Alu -181 130 2 337 228 149 53 chr6 16268834 16268919 -173010635 + L1ME4a LINE L1 5959 6059 -62 2266 99 3 0 chr6 16268919 16269221 -173010333 - AluSx SINE Alu -9 303 1 337 228 149 53 chr6 16269221 16269249 -173010305 + L1ME4a LINE L1 6059 6083 -38 1908 214 85 26 chr6 16269251 16269891 -173009663 - L1ME2 LINE L1 -8 6162 5452 1197 162 0 50 chr6 16269905 16270127 -173009427 - AluJb SINE Alu -15 297 87 1800 98 44 63 chr6 16270166 16270481 -173009073 - AluSx SINE Alu -3 309 1 712 123 0 15 chr6 16270483 16270613 -173008941 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 2052 134 0 0 chr6 16270618 16270924 -173008630 + AluSx SINE Alu 3 308 -4 1243 168 34 71 chr6 16270963 16271116 -173008438 - AluJo SINE Alu -18 294 156 2110 111 0 3 chr6 16271116 16271404 -173008150 - AluSg SINE Alu -19 291 5 1243 168 34 71 chr6 16271404 16271547 -173008007 - AluJo SINE Alu -156 156 9 1721 146 56 0 chr6 16271645 16271818 -173007736 - AluSg SINE Alu -7 303 106 234 0 0 0 chr6 16271818 16271844 -173007710 + (TA)n Simple_repeat Simple_repeat 2 27 0 1721 146 56 0 chr6 16271844 16271957 -173007597 - AluSg SINE Alu -204 106 1 267 235 0 0 chr6 16272787 16272855 -173006699 - L1ME2 LINE L1 -767 5395 5328 2076 181 57 75 chr6 16273219 16273783 -173005771 - MLT2B3 LTR ERVL 0 554 1 2019 113 0 45 chr6 16273866 16274176 -173005378 - AluSg SINE Alu -14 296 1 630 323 16 16 chr6 16274238 16274430 -173005124 - L2 LINE L2 0 3272 3081 27 49 0 0 chr6 16274494 16274535 -173005019 + AT_rich Low_complexity Low_complexity 1 41 0 2085 125 3 0 chr6 16274654 16274950 -173004604 - AluSx SINE Alu -15 297 1 540 100 0 0 chr6 16276951 16277031 -173002523 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 238 200 150 0 chr6 16278308 16278388 -173001166 - L1MC4 LINE L1 -1337 6705 6614 333 258 21 43 chr6 16278428 16278521 -173001033 + L1MC4 LINE L1 6614 6704 -1338 187 155 0 69 chr6 16278522 16278580 -173000974 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 235 150 0 0 chr6 16278582 16278622 -173000932 - L1MC4 LINE L1 -1341 6701 6662 1917 120 0 11 chr6 16278749 16279058 -173000496 - AluY SINE Alu 0 306 1 2065 122 3 0 chr6 16279058 16279353 -173000201 - AluSq SINE Alu -16 297 2 385 230 14 74 chr6 16279754 16279902 -172999652 + Charlie7 DNA MER1_type 1 139 -2473 1384 200 48 3 chr6 16280070 16280365 -172999189 + AluJb SINE Alu 5 312 0 213 65 0 0 chr6 16280365 16280396 -172999158 + (GA)n Simple_repeat Simple_repeat 1 31 0 567 0 0 0 chr6 16280396 16280459 -172999095 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 776 173 8 8 chr6 16280478 16280611 -172998943 + FLAM_C SINE Alu 1 133 0 1472 101 0 18 chr6 16280828 16281046 -172998508 - AluSx SINE Alu -96 216 3 669 143 9 194 chr6 16281082 16281134 -172998420 - MER33 DNA MER1_type -2298 326 266 1953 118 0 67 chr6 16281134 16281448 -172998106 + AluSx SINE Alu 3 295 -17 669 143 9 194 chr6 16281448 16281566 -172997988 - MER33 DNA MER1_type -2358 266 128 1576 139 95 7 chr6 16281566 16281839 -172997715 + 7SLRNA srpRNA srpRNA 15 311 -9 669 143 9 194 chr6 16281839 16281859 -172997695 - MER33 DNA MER1_type -2496 128 106 1810 156 0 0 chr6 16281859 16282141 -172997413 + AluJo SINE Alu 1 282 -30 324 0 0 0 chr6 16282141 16282177 -172997377 + (TA)n Simple_repeat Simple_repeat 2 37 0 669 143 9 194 chr6 16282177 16282333 -172997221 - MER33 DNA MER1_type -2516 108 3 1721 156 7 20 chr6 16282570 16282872 -172996682 + AluJb SINE Alu 1 298 -14 498 197 27 122 chr6 16282902 16283020 -172996534 - MIR SINE MIR -87 175 79 1875 117 7 4 chr6 16283020 16283330 -172996224 + AluSx SINE Alu 8 318 0 498 197 27 122 chr6 16283330 16283398 -172996156 - MIR SINE MIR -183 79 6 2585 154 66 59 chr6 16283490 16283553 -172996001 + LTR26B LTR ERV1 1 62 -469 2073 114 0 3 chr6 16283553 16283850 -172995704 + AluSx SINE Alu 1 296 -16 2585 154 66 59 chr6 16283850 16284313 -172995241 + LTR26B LTR ERV1 62 531 0 2154 106 0 0 chr6 16284871 16285163 -172994391 - AluSq SINE Alu -21 292 1 22 0 0 0 chr6 16285321 16285343 -172994211 + AT_rich Low_complexity Low_complexity 1 22 0 1346 162 13 87 chr6 16286100 16286241 -172993313 + AluJo SINE Alu 1 109 -203 1603 195 0 0 chr6 16286241 16286545 -172993009 + AluJb SINE Alu 1 304 0 1346 162 13 87 chr6 16286545 16286711 -172992843 + AluJo SINE Alu 109 286 -26 25 0 0 0 chr6 16287437 16287462 -172992092 + AT_rich Low_complexity Low_complexity 1 25 0 1399 12 6 6 chr6 16287464 16287629 -172991925 - L1PA3 LINE L1 0 6155 5991 804 128 21 57 chr6 16287651 16287792 -172991762 - FLAM_C SINE Alu -6 137 2 2165 100 0 0 chr6 16288144 16288434 -172991120 - AluSq SINE Alu -23 290 1 23 78 0 0 chr6 16288657 16288708 -172990846 + AT_rich Low_complexity Low_complexity 1 51 0 187 295 175 12 chr6 16288809 16288962 -172990592 + MIR SINE MIR 20 208 -54 624 198 48 0 chr6 16288999 16289125 -172990429 + AluJo SINE Alu 39 170 -142 2289 88 3 3 chr6 16289179 16289487 -172990067 + AluSp SINE Alu 3 310 -3 724 164 0 36 chr6 16290206 16290346 -172989208 - FRAM SINE Alu 0 40 1 829 215 0 36 chr6 16290521 16290716 -172988838 - AluSg/x SINE Alu -7 305 118 786 304 11 8 chr6 16290721 16290984 -172988570 - L1ME4a LINE L1 -247 5874 5611 2256 100 49 31 chr6 16291005 16291154 -172988400 + THE1A LTR MaLR 1 146 -209 2026 118 3 0 chr6 16291154 16291458 -172988096 - AluSq SINE Alu -8 305 1 2256 100 49 31 chr6 16291458 16291657 -172987897 + THE1A LTR MaLR 146 355 0 432 103 0 0 chr6 16291953 16292021 -172987533 - L1PB3 LINE L1 0 6154 6087 2103 106 10 0 chr6 16292044 16292336 -172987218 - AluSq SINE Alu -18 295 1 966 108 36 209 chr6 16292552 16292631 -172986923 + MER30 DNA MER1_type 1 92 -138 1836 153 3 0 chr6 16292631 16292918 -172986636 + AluSx SINE Alu 1 288 -24 1931 115 11 0 chr6 16292928 16293215 -172986339 + AluSq SINE Alu 1 290 -23 966 108 36 209 chr6 16293215 16293402 -172986152 + MER30 DNA MER1_type 102 230 0 1393 165 76 3 chr6 16293441 16293732 -172985822 + AluJo SINE Alu 1 312 0 494 69 0 14 chr6 16293732 16293804 -172985750 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1127 71 0 33 chr6 16293804 16293988 -172985566 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2432 58 3 7 chr6 16294321 16294631 -172984923 - AluSc SINE Alu 0 309 1 1555 192 3 42 chr6 16294642 16294950 -172984604 - AluJo SINE Alu -2 300 5 1888 53 0 16 chr6 16294969 16295212 -172984342 + AluY SINE Alu 57 295 -16 1064 99 6 17 chr6 16295216 16295397 -172984157 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 240 111 0 0 chr6 16295397 16295433 -172984121 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2179 99 7 3 chr6 16295433 16295737 -172983817 - AluSx SINE Alu -3 309 5 1864 140 7 3 chr6 16295767 16296059 -172983495 + AluSq SINE Alu 1 293 -20 1837 135 0 43 chr6 16296144 16296282 -172983272 + AluJb SINE Alu 1 143 -190 2252 92 3 3 chr6 16296282 16296588 -172982966 + AluSp SINE Alu 1 306 -7 1837 135 0 43 chr6 16296588 16296796 -172982758 + AluJb SINE Alu 143 333 0 3682 105 39 60 chr6 16297075 16297324 -172982230 + MER39B LTR ERV1 1 254 -399 2211 115 0 3 chr6 16297324 16297636 -172981918 + AluSq SINE Alu 1 311 -2 3682 105 39 60 chr6 16297636 16297883 -172981671 + MER39B LTR ERV1 254 482 -171 2212 102 0 3 chr6 16297883 16298186 -172981368 + AluSx SINE Alu 1 302 -10 3682 105 39 60 chr6 16298186 16298355 -172981199 + MER39B LTR ERV1 482 653 0 227 182 36 18 chr6 16298791 16298846 -172980708 + MIR SINE MIR 96 151 -111 2095 129 0 0 chr6 16299014 16299317 -172980237 + AluSx SINE Alu 1 303 -9 1222 196 0 0 chr6 16299329 16299579 -172979975 + L1MA4 LINE L1 6049 6298 -2 2258 97 0 0 chr6 16299587 16299885 -172979669 + AluSx SINE Alu 1 298 -14 832 118 0 59 chr6 16299886 16300022 -172979532 + FLAM_C SINE Alu 1 128 -5 306 143 0 0 chr6 16300213 16300276 -172979278 + (TC)n Simple_repeat Simple_repeat 2 64 0 282 29 0 0 chr6 16300276 16300311 -172979243 + (CA)n Simple_repeat Simple_repeat 1 35 0 259 395 35 23 chr6 16300825 16300997 -172978557 - MIR3 SINE MIR -15 193 20 196 274 129 0 chr6 16301028 16301090 -172978464 - L2 LINE L2 0 3313 3244 28 0 0 0 chr6 16302440 16302468 -172977086 + AT_rich Low_complexity Low_complexity 1 28 0 1517 126 72 47 chr6 16302524 16302802 -172976752 - AluJb SINE Alu -27 285 1 275 238 0 0 chr6 16302988 16303051 -172976503 + L1MA8 LINE L1 6181 6243 -48 269 309 12 12 chr6 16303419 16303503 -172976051 - MIR3 SINE MIR -30 178 95 202 288 54 72 chr6 16303474 16303585 -172975969 + MIR3 SINE MIR 85 193 -15 * 2220 88 7 0 chr6 16304401 16304698 -172974856 + AluSx SINE Alu 1 299 -13 1749 161 0 10 chr6 16305366 16305670 -172973884 - AluJb SINE Alu -11 301 1 2282 94 3 3 chr6 16306185 16306494 -172973060 + AluSc SINE Alu 1 309 0 229 253 274 11 chr6 16306800 16306895 -172972659 - MER5A DNA MER1_type 0 189 70 2231 90 0 16 chr6 16306916 16307228 -172972326 - AluSq SINE Alu -6 307 1 2249 81 0 3 chr6 16307793 16308090 -172971464 - AluSg SINE Alu -14 296 1 392 374 61 9 chr6 16308111 16308325 -172971229 - MIR SINE MIR -7 255 31 923 128 0 0 chr6 16308616 16308749 -172970805 - FLAM_C SINE Alu 0 133 1 2349 93 0 0 chr6 16308816 16309126 -172970428 + AluSx SINE Alu 1 310 -2 1285 208 39 108 chr6 16309187 16309595 -172969959 - MSTD LTR MaLR 0 396 17 1715 170 0 20 chr6 16309660 16309960 -172969594 + AluJb SINE Alu 1 294 -18 1959 155 0 0 chr6 16310228 16310538 -172969016 - AluSx SINE Alu -2 310 1 912 132 0 0 chr6 16310538 16310674 -172968880 - AluSq/x SINE Alu -176 136 1 254 301 165 8 chr6 16310675 16310808 -172968746 + MIR SINE MIR 96 249 -13 1504 180 14 4 chr6 16310861 16311159 -172968395 - AluJb SINE Alu 0 301 1 30 0 0 0 chr6 16311321 16311351 -172968203 + AT_rich Low_complexity Low_complexity 1 30 0 496 208 21 10 chr6 16312167 16312263 -172967291 + MER5A DNA MER1_type 16 112 -77 326 275 191 15 chr6 16312196 16312327 -172967227 - MER5A DNA MER1_type -32 157 4 * 328 164 0 0 chr6 16312587 16312642 -172966912 + AluJ SINE Alu 87 141 -161 2061 114 7 3 chr6 16312646 16313131 -172966423 + AluSc SINE Alu 1 308 -1 1043 117 11 6 chr6 16312923 16313182 -172966372 + (GAAA)n Simple_repeat Simple_repeat 1 440 0 919 179 13 0 chr6 16313182 16313338 -172966216 + AluJ SINE Alu 129 286 -26 538 178 59 20 chr6 16313344 16313445 -172966109 - AluJb SINE Alu -25 287 183 1719 150 21 28 chr6 16313445 16313735 -172965819 + AluJb SINE Alu 14 298 -14 23 0 0 0 chr6 16313741 16313764 -172965790 + AT_rich Low_complexity Low_complexity 1 23 0 872 57 0 0 chr6 16314010 16314115 -172965439 + AluY SINE Alu 1 105 -206 2243 108 7 0 chr6 16314724 16315021 -172964533 + AluSp SINE Alu 1 299 -14 1265 114 0 0 chr6 16315021 16315188 -172964366 + AluSq SINE Alu 135 301 -12 2316 101 0 0 chr6 16315387 16315685 -172963869 - AluSq SINE Alu -15 298 1 460 98 0 98 chr6 16315688 16315770 -172963784 - U3 snRNA snRNA -143 74 1 1972 142 30 0 chr6 16315788 16315967 -172963587 - AluJo SINE Alu -1 311 139 2241 109 6 10 chr6 16315967 16316280 -172963274 - AluSx SINE Alu 0 312 1 203 79 26 0 chr6 16316284 16316322 -172963232 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 1972 142 30 0 chr6 16316322 16316439 -172963115 - AluJo SINE Alu -175 137 1 1671 125 0 0 chr6 16317827 16318051 -172961503 - AluSx SINE Alu -88 224 1 2292 92 0 3 chr6 16318258 16318584 -172960970 - AluSg SINE Alu 0 325 1 305 0 50 0 chr6 16318586 16318626 -172960928 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 1511 196 11 25 chr6 16318626 16318912 -172960642 - AluJo SINE Alu -30 282 1 185 200 50 0 chr6 16319159 16319199 -172960355 + MIR SINE MIR 81 122 -140 886 118 0 37 chr6 16319235 16319371 -172960183 + FLAM_C SINE Alu 1 131 -2 2023 96 4 0 chr6 16319404 16319664 -172959890 - AluSc SINE Alu -12 297 37 566 85 0 64 chr6 16319664 16319758 -172959796 + FLAM_A SINE Alu 51 138 -4 2168 115 3 7 chr6 16320266 16320562 -172958992 + AluSq SINE Alu 1 295 -18 2330 98 3 0 chr6 16320566 16320862 -172958692 + AluSp SINE Alu 1 297 -16 237 254 17 0 chr6 16320916 16320975 -172958579 + L1MC/D LINE L1 5574 5633 -2175 2430 94 0 0 chr6 16321004 16321303 -172958251 - AluSg SINE Alu -9 301 3 1498 109 5 0 chr6 16321858 16322060 -172957494 + AluSp SINE Alu 2 204 -109 2137 108 3 16 chr6 16322416 16322723 -172956831 + AluSx SINE Alu 5 307 -5 401 0 20 0 chr6 16322871 16322920 -172956634 + (TG)n Simple_repeat Simple_repeat 2 51 0 780 169 0 0 chr6 16322929 16323059 -172956495 - FLAM_C SINE Alu -2 131 2 2205 125 0 0 chr6 16323196 16323492 -172956062 + AluSc SINE Alu 1 296 -13 1976 191 22 37 chr6 16323623 16323775 -172955779 + MSTD LTR MaLR 1 154 -242 1844 159 11 0 chr6 16323775 16324058 -172955496 - AluJb SINE Alu -20 292 7 1976 191 22 37 chr6 16324058 16324234 -172955320 + MSTD LTR MaLR 154 325 -71 1988 118 37 0 chr6 16324234 16324535 -172955019 - AluSx SINE Alu 0 311 1 1976 191 22 37 chr6 16324535 16324606 -172954948 + MSTD LTR MaLR 325 396 0 801 186 0 0 chr6 16324701 16324825 -172954729 + FRAM SINE Alu 23 146 -30 2170 107 4 0 chr6 16324827 16325154 -172954400 - AluSq SINE Alu 0 328 1 1450 159 63 22 chr6 16326050 16326321 -172953233 - AluJb SINE Alu -30 282 1 655 162 0 8 chr6 16326379 16326496 -172953058 + FLAM_C SINE Alu 24 139 -4 1911 127 33 4 chr6 16326747 16327023 -172952531 - AluSx SINE Alu -28 284 1 1797 167 3 28 chr6 16327116 16327434 -172952120 + AluJb SINE Alu 2 311 -1 242 265 29 0 chr6 16327485 16327553 -172952001 - LTR16A LTR ERVL 0 450 381 1960 130 40 7 chr6 16327566 16327866 -172951688 + AluSq SINE Alu 1 310 -3 566 155 0 10 chr6 16327884 16327981 -172951573 + AluJb SINE Alu 206 301 -11 976 164 0 0 chr6 16327982 16328128 -172951426 - AluJo SINE Alu -30 282 137 739 273 90 60 chr6 16328261 16328561 -172950993 - MLT1G1 LTR MaLR -250 345 37 2114 101 6 52 chr6 16328632 16328959 -172950595 - AluSx SINE Alu 0 312 1 888 134 0 15 chr6 16328959 16329093 -172950461 - AluJo SINE Alu -178 134 3 2126 107 11 0 chr6 16330579 16330629 -172948925 + AluSg SINE Alu 1 49 -260 198 0 0 0 chr6 16330629 16330651 -172948903 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2126 107 11 0 chr6 16330651 16330906 -172948648 + AluSg SINE Alu 49 309 0 2199 115 0 0 chr6 16331093 16331388 -172948166 - AluSx SINE Alu -17 295 1 2184 102 3 0 chr6 16331605 16331898 -172947656 + AluSq SINE Alu 1 294 -19 200 145 145 48 chr6 16331967 16332029 -172947525 - MIR SINE MIR -109 153 86 730 181 0 22 chr6 16332181 16332319 -172947235 - FLAM_C SINE Alu -4 139 5 2611 62 0 0 chr6 16332347 16332652 -172946902 + AluY SINE Alu 2 306 -5 1881 155 0 23 chr6 16332858 16333168 -172946386 - AluJb SINE Alu -9 303 1 2374 77 3 3 chr6 16333253 16333602 -172945952 + AluSp SINE Alu 1 349 0 1822 167 14 0 chr6 16333739 16334027 -172945527 - AluSx SINE Alu -20 292 1 2258 100 0 32 chr6 16334083 16334393 -172945161 - AluSx SINE Alu 0 312 13 23 0 0 0 chr6 16334393 16334416 -172945138 + AT_rich Low_complexity Low_complexity 1 23 0 2165 125 3 28 chr6 16335229 16335548 -172944006 - AluSx SINE Alu -1 311 1 1151 194 0 37 chr6 16335664 16335880 -172943674 + AluJb SINE Alu 87 294 -18 2171 116 7 10 chr6 16336130 16336440 -172943114 - AluSx SINE Alu -3 309 1 2240 103 0 30 chr6 16337107 16337408 -172942146 + AluSg SINE Alu 1 292 -18 2170 119 0 0 chr6 16337464 16337750 -172941804 + AluSq SINE Alu 1 286 -27 195 42 0 0 chr6 16337753 16337777 -172941777 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 338 52 13 chr6 16337840 16337917 -172941637 - L2 LINE L2 0 3272 3193 884 113 0 23 chr6 16337918 16338051 -172941503 + FLAM_C SINE Alu 1 130 -3 332 307 35 0 chr6 16338103 16338217 -172941337 + MIR SINE MIR 47 164 -98 247 281 56 0 chr6 16338294 16338383 -172941171 - MIR SINE MIR -11 251 158 412 302 31 8 chr6 16338666 16338795 -172940759 - MIR SINE MIR -103 159 28 530 231 28 66 chr6 16340606 16340892 -172938662 - L1MC5 LINE L1 -36 7925 7651 1713 174 3 3 chr6 16340907 16341189 -172938365 + AluJb SINE Alu 1 282 -30 2137 112 3 22 chr6 16341204 16341517 -172938037 + AluSg SINE Alu 1 307 -3 2366 89 0 3 chr6 16341520 16341851 -172937703 + AluY SINE Alu 1 311 0 1257 116 0 0 chr6 16341851 16342015 -172937539 + AluSg/x SINE Alu 132 295 -15 1888 162 3 3 chr6 16342028 16342342 -172937212 + L1MB3 LINE L1 5828 6141 -42 2317 74 27 3 chr6 16342342 16342639 -172936915 + AluSp SINE Alu 1 304 -9 2472 84 0 0 chr6 16342651 16342949 -172936605 + AluSq SINE Alu 1 298 -15 1245 128 11 0 chr6 16342964 16343144 -172936410 + AluSg/x SINE Alu 125 306 -6 636 260 113 40 chr6 16343209 16343476 -172936078 - L1MC5 LINE L1 -302 7659 7360 1766 141 22 59 chr6 16343476 16343796 -172935758 - AluSx SINE Alu 0 312 5 636 260 113 40 chr6 16343796 16343874 -172935680 - L1MC5 LINE L1 -601 7360 7289 1207 148 0 95 chr6 16344057 16344300 -172935254 - AluJb SINE Alu -6 306 87 2085 105 0 24 chr6 16344404 16344698 -172934856 + AluSx SINE Alu 1 287 -25 477 196 50 33 chr6 16345221 16345371 -172934183 + L1MC5 LINE L1 7786 7995 0 347 235 0 0 chr6 16345482 16345550 -172934004 + MIR SINE MIR 81 148 -60 2172 92 0 18 chr6 16346085 16346368 -172933186 + AluY SINE Alu 2 279 -32 318 26 0 0 chr6 16346370 16346409 -172933145 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2228 113 0 0 chr6 16346421 16346714 -172932840 + AluSx SINE Alu 1 293 -19 2099 119 17 7 chr6 16346725 16347018 -172932536 + AluSx SINE Alu 1 296 -16 27 0 0 0 chr6 16347021 16347048 -172932506 + AT_rich Low_complexity Low_complexity 1 27 0 1621 137 10 48 chr6 16347048 16347295 -172932259 - L1MB3 LINE L1 -261 5922 5667 2039 113 13 19 chr6 16347295 16347606 -172931948 + AluSc SINE Alu 1 309 0 2184 102 48 0 chr6 16347613 16347907 -172931647 + AluSx SINE Alu 1 308 -4 1621 137 10 48 chr6 16347907 16347943 -172931611 - L1MB3 LINE L1 -522 5661 5642 2106 125 0 0 chr6 16348235 16348514 -172931040 + AluSx SINE Alu 18 296 -16 288 111 0 0 chr6 16348526 16348571 -172930983 + (CA)n Simple_repeat Simple_repeat 2 46 0 766 153 0 62 chr6 16348575 16348719 -172930835 - AluJo SINE Alu -176 136 2 1861 180 0 0 chr6 16348728 16349033 -172930521 - AluJo SINE Alu -7 305 1 2424 74 0 3 chr6 16349456 16349755 -172929799 + AluY SINE Alu 1 298 -13 2164 111 0 10 chr6 16349851 16350148 -172929406 - AluSx SINE Alu -16 296 3 216 67 0 0 chr6 16350214 16350244 -172929310 + (TG)n Simple_repeat Simple_repeat 2 31 0 2233 106 0 3 chr6 16350448 16350750 -172928804 + AluSx SINE Alu 1 301 -11 295 185 25 6 chr6 16351958 16352115 -172927439 + (TA)n Simple_repeat Simple_repeat 2 161 0 2342 104 3 13 chr6 16352566 16352882 -172926672 + AluSp SINE Alu 1 313 0 725 229 96 0 chr6 16352948 16353105 -172926449 + Tigger3(Golem) DNA MER2_type 1 172 -2857 4725 164 34 15 chr6 16353108 16353980 -172925574 + Tigger3(Golem) DNA MER2_type 2141 3029 0 198 224 0 0 chr6 16354096 16354145 -172925409 + CT-rich Low_complexity Low_complexity 84 132 0 234 0 0 0 chr6 16354307 16354333 -172925221 + (TA)n Simple_repeat Simple_repeat 2 27 0 392 269 37 0 chr6 16354769 16354903 -172924651 - MIR SINE MIR 0 262 124 215 348 35 9 chr6 16355031 16355146 -172924408 + MIR SINE MIR 37 154 -108 257 296 25 0 chr6 16356775 16356856 -172922698 - L2 LINE L2 -5 3267 3185 253 65 0 109 chr6 16357630 16357676 -172921878 + U2 snRNA snRNA 4 44 -144 514 130 150 0 chr6 16357804 16357904 -172921650 + MER5B DNA MER1_type 44 158 -20 349 148 35 25 chr6 16357904 16358232 -172921322 + (TA)n Simple_repeat Simple_repeat 1 331 0 1645 174 0 14 chr6 16358248 16358524 -172921030 - AluJo SINE Alu -26 286 15 1617 245 72 2 chr6 16359657 16359924 -172919630 - MLT1C LTR MaLR 0 467 157 279 93 0 0 chr6 16359924 16359967 -172919587 + (TG)n Simple_repeat Simple_repeat 2 44 0 1617 245 72 2 chr6 16359967 16360131 -172919423 - MLT1C LTR MaLR -310 157 6 206 331 80 37 chr6 16361333 16361496 -172918058 - MIR SINE MIR -71 191 22 2790 70 117 2 chr6 16361624 16362026 -172917528 - LTR7 LTR ERV1 -2 448 1 203 325 39 0 chr6 16362319 16362396 -172917158 - L2 LINE L2 -372 2942 2863 326 266 75 50 chr6 16363314 16363474 -172916080 - L1ME4a LINE L1 -184 5937 5768 370 298 96 0 chr6 16363474 16363578 -172915976 + MER81 DNA DNA 1 114 0 326 266 75 50 chr6 16363578 16363658 -172915896 - L1ME4a LINE L1 -353 5768 5691 401 264 28 9 chr6 16363841 16363947 -172915607 + MLT1C LTR MaLR 1 108 -359 2049 138 0 0 chr6 16363958 16364243 -172915311 + AluSx SINE Alu 1 304 -8 213 83 0 28 chr6 16364243 16364279 -172915275 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 841 139 8 0 chr6 16364290 16364419 -172915135 + AluSg/x SINE Alu 152 316 0 229 86 0 0 chr6 16364419 16364454 -172915100 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 943 171 0 0 chr6 16364456 16364597 -172914957 + AluSg/x SINE Alu 140 330 0 451 0 0 0 chr6 16364597 16364647 -172914907 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 657 186 115 148 chr6 16364664 16365003 -172914551 + MLT1C LTR MaLR 132 459 -8 2269 89 0 10 chr6 16365207 16365509 -172914045 + AluY SINE Alu 3 301 -10 219 88 0 0 chr6 16365738 16365772 -172913782 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 604 217 26 0 chr6 16365772 16365887 -172913667 - FLAM_C SINE Alu -21 122 5 5946 57 13 16 chr6 16365954 16366708 -172912846 - SVA Other Other 0 1386 635 2270 91 17 0 chr6 16367734 16368032 -172911522 + AluSx SINE Alu 1 303 -9 1035 70 8 0 chr6 16368143 16368271 -172911283 + AluY SINE Alu 2 130 -181 32 26 0 0 chr6 16368271 16368310 -172911244 + AT_rich Low_complexity Low_complexity 1 39 0 296 236 97 42 chr6 16368310 16368454 -172911100 - L1ME4a LINE L1 -192 5929 5778 2251 96 10 7 chr6 16368574 16368875 -172910679 + AluSg SINE Alu 1 302 -8 1982 154 0 3 chr6 16369142 16369447 -172910107 - AluJo SINE Alu -8 304 1 519 161 4 1 chr6 16369593 16369680 -172909874 - MLT1B LTR MaLR -304 86 1 770 191 8 0 chr6 16369764 16369890 -172909664 + AluJo/FLAM SINE Alu 1 127 -185 2103 125 0 0 chr6 16369891 16370186 -172909368 - AluY SINE Alu -16 295 1 503 233 112 0 chr6 16370192 16370308 -172909246 - FLAM_A SINE Alu -4 129 1 1040 204 0 45 chr6 16370545 16370704 -172908850 - AluJo SINE Alu -20 292 144 2163 110 0 7 chr6 16370704 16370995 -172908559 - AluSg1 SINE Alu -18 291 3 1040 204 0 45 chr6 16370995 16371056 -172908498 - AluJo SINE Alu -168 144 82 2397 94 3 0 chr6 16371070 16371379 -172908175 - AluSp SINE Alu -3 310 1 2131 138 0 3 chr6 16371415 16371727 -172907827 - AluSx SINE Alu -1 311 1 206 244 24 44 chr6 16371780 16371905 -172907649 + MIR SINE MIR 2 163 -99 729 181 12 50 chr6 16371905 16372043 -172907511 + MLT1A2 LTR MaLR 1 134 -231 1975 179 48 14 chr6 16372043 16372396 -172907158 + MLT1A1 LTR MaLR 1 365 0 729 181 12 50 chr6 16372396 16372417 -172907137 + MLT1A2 LTR MaLR 134 154 -211 654 169 14 68 chr6 16372422 16372570 -172906984 + L1PA16 LINE L1 6005 6144 -22 911 193 17 80 chr6 16372576 16372815 -172906739 + MLT1A2 LTR MaLR 151 374 0 1164 127 0 123 chr6 16373231 16373491 -172906063 + Tigger1 DNA MER2_type 1 228 -2190 222 23 45 45 chr6 16373499 16373543 -172906011 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1994 121 4 7 chr6 16373544 16373825 -172905729 - AluSx SINE Alu -32 280 1 378 0 0 0 chr6 16374019 16374061 -172905493 + (CA)n Simple_repeat Simple_repeat 1 42 0 394 299 65 52 chr6 16374062 16374557 -172904997 + L1MEd LINE L1 714 1214 -4905 332 309 32 32 chr6 16374645 16374821 -172904733 + L1MEd LINE L1 1254 1429 -1061 590 307 14 37 chr6 16374821 16375036 -172904518 + MER63A DNA MER1_type 1 210 0 332 309 32 32 chr6 16375036 16375138 -172904416 + L1MEd LINE L1 1428 1626 -864 183 80 0 0 chr6 16375140 16375165 -172904389 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 477 322 20 14 chr6 16375962 16376307 -172903247 + L1MEd LINE L1 2186 2532 -3597 21 82 0 0 chr6 16376375 16376424 -172903130 + AT_rich Low_complexity Low_complexity 1 49 0 263 288 50 97 chr6 16376544 16376947 -172902607 + HAL1 LINE L1 2038 2421 -86 243 146 0 0 chr6 16377702 16377743 -172901811 + (CA)n Simple_repeat Simple_repeat 1 41 0 236 259 0 17 chr6 16377760 16377818 -172901736 - AluSp SINE Alu -118 185 129 289 362 31 26 chr6 16377836 16378065 -172901489 + L2 LINE L2 2674 2903 -411 458 103 0 0 chr6 16379044 16379112 -172900442 - L1PB3 LINE L1 0 6154 6087 2168 106 10 3 chr6 16379135 16379428 -172900126 - AluSq SINE Alu -18 295 1 621 77 0 0 chr6 16379644 16379722 -172899832 + MER30B DNA MER1_type 1 78 -112 967 130 0 0 chr6 16379723 16379854 -172899700 + FLAM_C SINE Alu 1 131 -2 324 373 70 10 chr6 16380146 16380347 -172899207 + MIR SINE MIR 31 243 -19 2330 91 0 3 chr6 16380380 16380677 -172898877 + AluSg SINE Alu 1 296 -14 1050 171 13 46 chr6 16380965 16381223 -172898331 + AluSg/x SINE Alu 79 344 -333 2256 131 0 0 chr6 16381223 16381535 -172898019 + AluSx SINE Alu 1 312 0 1050 171 13 46 chr6 16381535 16381572 -172897982 + AluSg/x SINE Alu 344 677 0 22 0 0 0 chr6 16381614 16381636 -172897918 + AT_rich Low_complexity Low_complexity 1 22 0 4417 104 60 41 chr6 16381636 16382347 -172897207 + Tigger1 DNA MER2_type 1002 1726 -692 2154 112 0 10 chr6 16382347 16382642 -172896912 + AluSq SINE Alu 1 292 -21 2444 175 76 17 chr6 16383198 16383660 -172895894 - LTR26B LTR ERV1 0 531 43 2145 113 0 3 chr6 16383661 16383952 -172895602 - AluSx SINE Alu -16 296 7 27 29 0 0 chr6 16384098 16384132 -172895422 + AT_rich Low_complexity Low_complexity 1 34 0 182 358 62 42 chr6 16384428 16384454 -172895100 - MIR SINE MIR -9 253 229 2319 110 3 0 chr6 16384454 16384763 -172894791 - AluSg SINE Alu 0 310 1 182 358 62 42 chr6 16384763 16384929 -172894625 - MIR SINE MIR -33 229 57 284 279 35 12 chr6 16384952 16385038 -172894516 + MIR3 SINE MIR 121 208 0 24 0 8 0 chr6 16385116 16385179 -172894375 + AT_rich Low_complexity Low_complexity 1 24 0 376 314 105 34 chr6 16385574 16385813 -172893741 + MIR SINE MIR 3 258 -4 443 63 16 0 chr6 16385859 16385922 -172893632 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 957 211 226 43 chr6 16386143 16386631 -172892923 + MER39 LTR ERV1 1 642 -65 2278 114 3 0 chr6 16386631 16386930 -172892624 - AluSg SINE Alu -10 300 1 957 211 226 43 chr6 16386930 16387011 -172892543 + MER39 LTR ERV1 642 707 0 2181 67 7 7 chr6 16387233 16387544 -172892010 - AluY SINE Alu 0 311 1 2356 93 3 0 chr6 16388251 16388561 -172890993 + AluSx SINE Alu 1 311 -1 334 196 0 0 chr6 16388569 16388625 -172890929 - MLT2D LTR ERVL -351 63 8 213 214 0 0 chr6 16388625 16388667 -172890887 + CT-rich Low_complexity Low_complexity 1 42 0 182 330 48 19 chr6 16388874 16388977 -172890577 + MIR SINE MIR 146 251 -11 195 319 14 14 chr6 16389003 16389072 -172890482 + L2 LINE L2 3013 3081 -232 285 51 0 0 chr6 16389494 16389533 -172890021 + (CA)n Simple_repeat Simple_repeat 2 40 0 234 220 0 20 chr6 16389878 16389928 -172889626 + Charlie4 DNA MER1_type 1178 1226 -735 272 342 103 0 chr6 16390306 16390423 -172889131 - L2 LINE L2 -5 3267 3139 319 262 178 19 chr6 16393268 16393375 -172886179 - MER58A DNA MER1_type 0 125 2 198 278 42 56 chr6 16394451 16394523 -172885031 + MIR SINE MIR 29 99 -163 323 23 23 0 chr6 16394856 16394900 -172884654 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 306 228 19 0 chr6 16394902 16395060 -172884494 + (TA)n Simple_repeat Simple_repeat 2 162 0 1908 182 58 11 chr6 16395110 16395472 -172884082 + MER57A LTR ERV1 1 379 -24 306 262 71 0 chr6 16395507 16395591 -172883963 - L1MC4 LINE L1 -1339 6703 6614 25 0 0 0 chr6 16396755 16396780 -172882774 + AT_rich Low_complexity Low_complexity 1 25 0 219 211 42 42 chr6 16398302 16398373 -172881181 - L2 LINE L2 -99 3214 3144 186 143 0 0 chr6 16398431 16398466 -172881088 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 298 343 73 11 chr6 16399131 16399309 -172880245 + MIR SINE MIR 1 189 -73 312 326 20 0 chr6 16399392 16399490 -172880064 + MIR SINE MIR 133 232 -30 2021 113 13 19 chr6 16399678 16399989 -172879565 - AluSc SINE Alu 0 309 1 1540 146 12 0 chr6 16399990 16400236 -172879318 + L1MB3 LINE L1 5674 5922 -261 27 0 0 0 chr6 16400236 16400263 -172879291 + AT_rich Low_complexity Low_complexity 1 27 0 2085 119 17 7 chr6 16400266 16400559 -172878995 - AluSx SINE Alu -16 296 1 2213 113 0 0 chr6 16400570 16400863 -172878691 - AluSx SINE Alu -19 293 1 390 21 0 0 chr6 16400875 16400922 -172878632 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2212 86 4 0 chr6 16400924 16401202 -172878352 - AluY SINE Alu -32 279 1 25 51 0 0 chr6 16401687 16401726 -172877828 + AT_rich Low_complexity Low_complexity 1 39 0 2043 118 7 7 chr6 16401763 16402052 -172877502 - AluSx SINE Alu -22 290 2 342 223 27 88 chr6 16402453 16402601 -172876953 + Charlie7 DNA MER1_type 1 139 -2473 728 176 9 0 chr6 16402769 16402877 -172876677 + AluSq/x SINE Alu 5 113 -199 2190 96 7 13 chr6 16403866 16404169 -172875385 - AluSg SINE Alu -9 301 1 2394 87 3 0 chr6 16404175 16404475 -172875079 - AluSp SINE Alu -12 301 1 472 286 44 28 chr6 16404722 16404904 -172874650 + MIR SINE MIR 34 218 -44 865 150 7 29 chr6 16405148 16405288 -172874266 - AluJo SINE Alu -175 137 1 240 318 12 12 chr6 16405289 16405374 -172874180 - MIR SINE MIR -57 151 67 1798 143 13 54 chr6 16405501 16405815 -172873739 - AluJb SINE Alu -11 301 1 308 256 190 0 chr6 16406757 16406878 -172872676 + MER5B DNA MER1_type 19 162 -16 377 367 23 6 chr6 16407207 16407384 -172872170 - MIR SINE MIR -33 229 50 265 304 21 34 chr6 16407607 16407747 -172871807 + MIR SINE MIR 13 150 -77 245 329 101 32 chr6 16408637 16408795 -172870759 - MIR SINE MIR -73 189 21 325 319 112 0 chr6 16409403 16409572 -172869982 - MIR SINE MIR -1 261 74 239 281 0 24 chr6 16409576 16409658 -172869896 - MIR SINE MIR 0 262 183 * 535 261 99 94 chr6 16409652 16409813 -172869741 - L2 LINE L2 0 3313 3154 2182 123 7 0 chr6 16409813 16410122 -172869432 - AluSq SINE Alu 0 313 3 535 261 99 94 chr6 16410122 16410374 -172869180 - L2 LINE L2 -159 3154 2898 221 353 110 7 chr6 16410433 16410569 -172868985 + MIR SINE MIR 5 154 -108 287 336 0 29 chr6 16410723 16410827 -172868727 - MIR SINE MIR -78 130 30 1860 128 13 56 chr6 16411391 16411696 -172867858 - AluSg SINE Alu -4 306 15 3752 130 26 45 chr6 16411710 16412354 -172867200 - MER41-int LTR ERV1 -3343 2603 1972 3591 129 95 82 chr6 16412354 16413709 -172865845 + pTR5 LTR ERV1 66 2438 0 1268 151 9 24 chr6 16413709 16414026 -172865528 - MER41-int LTR ERV1 -3971 1975 1560 26 0 0 0 chr6 16414429 16414455 -172865099 + AT_rich Low_complexity Low_complexity 1 26 0 2135 83 29 4 chr6 16414700 16414977 -172864577 - AluSx SINE Alu -28 284 1 463 240 219 28 chr6 16415245 16415528 -172864026 - MLT1J LTR MaLR -170 341 5 2077 129 0 0 chr6 16415922 16416202 -172863352 + AluSq SINE Alu 2 281 -32 460 62 15 0 chr6 16416202 16416267 -172863287 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 1074 183 9 27 chr6 16416422 16416646 -172862908 + AluJo SINE Alu 85 304 -8 2776 177 52 21 chr6 16416646 16417166 -172862388 + MER21A LTR ERV1 396 931 0 1715 146 3 75 chr6 16417189 16417325 -172862229 + AluSq SINE Alu 1 145 -168 2116 91 13 38 chr6 16417325 16417643 -172861911 + AluY SINE Alu 1 310 -1 1715 146 3 75 chr6 16417643 16417827 -172861727 + AluSq SINE Alu 145 298 -15 910 158 35 23 chr6 16417832 16418003 -172861551 + FRAM SINE Alu 1 166 -10 187 258 113 16 chr6 16418356 16418418 -172861136 + L2 LINE L2 3205 3272 0 603 129 11 21 chr6 16418420 16418513 -172861041 + AluJ/FLAM SINE Alu 2 93 -219 2220 100 7 7 chr6 16418514 16418823 -172860731 + AluSx SINE Alu 2 310 -2 367 268 147 29 chr6 16418860 16419079 -172860475 - MIR SINE MIR 0 262 24 2096 134 0 0 chr6 16419235 16419534 -172860020 + AluSx SINE Alu 1 299 -13 993 199 0 32 chr6 16419614 16419800 -172859754 - AluSq SINE Alu 0 313 134 1006 181 0 0 chr6 16419800 16419971 -172859583 - AluSg/x SINE Alu -6 306 136 1790 220 22 18 chr6 16420098 16420856 -172858698 + L1M3 LINE L1 4851 5613 -567 907 259 38 0 chr6 16420849 16421111 -172858443 + L1M4 LINE L1 4047 4318 -1828 * 1419 258 42 22 chr6 16421115 16421708 -172857846 + L1M4 LINE L1 4217 4821 -1325 1634 168 32 70 chr6 16421739 16422108 -172857446 + LTR1B LTR ERV1 1 355 -471 22 35 0 0 chr6 16422224 16422253 -172857301 + AT_rich Low_complexity Low_complexity 1 29 0 242 0 61 0 chr6 16422477 16422510 -172857044 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 445 275 123 55 chr6 16423262 16423571 -172855983 - MLT1K LTR MaLR -2 586 257 254 300 73 36 chr6 16424317 16424427 -172855127 + L2 LINE L2 3186 3299 -14 1529 153 66 4 chr6 16424428 16424702 -172854852 - MSTA LTR MaLR -130 298 8 286 294 8 87 chr6 16424746 16424872 -172854682 + L2 LINE L2 3174 3289 -24 24 67 0 0 chr6 16425213 16425258 -172854296 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr6 16425436 16425469 -172854085 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr6 16426113 16426142 -172853412 + AT_rich Low_complexity Low_complexity 1 29 0 4831 166 23 6 chr6 16476457 16477333 -172802221 + L1MA8 LINE L1 5400 6290 -1 296 277 81 20 chr6 16477431 16477579 -172801975 - MIR SINE MIR -51 211 55 30 0 0 0 chr6 16477711 16477741 -172801813 + AT_rich Low_complexity Low_complexity 1 30 0 1607 263 114 59 chr6 16477766 16478436 -172801118 - HAL1 LINE L1 -1260 1247 486 944 173 12 0 chr6 16478436 16478598 -172800956 - U1 snRNA snRNA 0 165 2 1607 263 114 59 chr6 16478598 16479079 -172800475 - HAL1 LINE L1 -2021 486 33 873 150 0 58 chr6 16479595 16479768 -172799786 + pTR5 LTR ERV1 743 905 -1533 275 280 25 32 chr6 16480120 16480415 -172799139 - L1MC/D LINE L1 -743 5403 5191 * 3693 168 84 27 chr6 16480410 16480474 -172799080 - L1MC3 LINE L1 -1 7784 7725 2042 186 19 6 chr6 16480474 16480834 -172798720 + MLT1A1 LTR MaLR 1 365 0 3693 168 84 27 chr6 16480834 16481589 -172797965 - L1MC3 LINE L1 -60 7725 6918 395 343 68 19 chr6 16481770 16482094 -172797460 - L1MC/D LINE L1 -1143 5003 4664 430 192 34 20 chr6 16482162 16482308 -172797246 + CT-rich Low_complexity Low_complexity 3 150 0 337 307 173 41 chr6 16482325 16482719 -172796835 - L1MC/D LINE L1 -1587 4559 4114 1916 200 36 53 chr6 16482720 16483325 -172796229 - L1MC/D LINE L1 -3269 2877 2283 234 265 110 22 chr6 16483470 16483606 -172795948 + Charlie2b DNA MER1_type 168 315 -2467 2466 59 7 16 chr6 16483614 16483921 -172795633 + AluY SINE Alu 1 304 -7 255 264 55 0 chr6 16483921 16484012 -172795542 + Charlie2b DNA MER1_type 560 655 -2127 873 169 44 0 chr6 16484112 16484295 -172795259 + Charlie2a DNA MER1_type 1476 1666 -1196 280 265 51 0 chr6 16484300 16484398 -172795156 + Charlie2a DNA MER1_type 2716 2818 -44 255 243 1 32 chr6 16484399 16484505 -172795049 + L1ME LINE L1 5738 5841 -329 782 282 53 70 chr6 16484567 16485021 -172794533 - L2 LINE L2 -16 3297 2852 2301 266 76 28 chr6 16485410 16486523 -172793031 + L1M4 LINE L1 3573 4739 -1407 1754 119 32 0 chr6 16486524 16486775 -172792779 + AluY SINE Alu 1 259 -52 356 365 55 38 chr6 16487227 16487411 -172792143 + L1MEd LINE L1 616 808 -5397 225 0 0 0 chr6 16487411 16487436 -172792118 + (CA)n Simple_repeat Simple_repeat 2 26 0 356 365 55 38 chr6 16487436 16487541 -172792013 + L1MEd LINE L1 808 910 -5295 1154 311 25 28 chr6 16487544 16487940 -172791614 - LTR16C LTR ERVL -8 483 89 39 0 0 0 chr6 16488042 16488081 -172791473 + AT_rich Low_complexity Low_complexity 1 39 0 317 254 100 43 chr6 16488186 16488428 -172791126 + L1MEd LINE L1 1463 1767 -809 235 368 0 0 chr6 16488482 16488558 -172790996 + MER58 DNA MER1_type 1 76 -139 619 250 23 0 chr6 16488559 16488731 -172790823 - L1MC2 LINE L1 -3 6341 6166 205 224 0 26 chr6 16488734 16488810 -172790744 + (CATA)n Simple_repeat Simple_repeat 4 77 0 239 214 29 14 chr6 16488823 16488893 -172790661 - L1M4 LINE L1 -3691 2455 2385 1059 205 84 16 chr6 16488993 16489242 -172790312 + MLT1A1 LTR MaLR 100 365 0 423 317 70 7 chr6 16489636 16489778 -172789776 - LTR33 LTR ERVL -123 398 248 24 32 0 0 chr6 16489813 16489844 -172789710 + AT_rich Low_complexity Low_complexity 1 31 0 1110 305 80 70 chr6 16490091 16490339 -172789215 + L2 LINE L2 2219 2463 -850 2216 122 20 0 chr6 16490339 16490642 -172788912 - AluSx SINE Alu -3 309 1 1110 305 80 70 chr6 16490642 16491457 -172788097 + L2 LINE L2 2463 3313 0 3668 80 2 20 chr6 16492044 16492102 -172787452 - MER41A LTR ERV1 -63 491 433 2437 82 0 3 chr6 16492102 16492407 -172787147 + AluSp SINE Alu 1 304 -9 3668 80 2 20 chr6 16492407 16492848 -172786706 - MER41A LTR ERV1 -121 433 1 1155 229 20 0 chr6 16492926 16493175 -172786379 - AluJb SINE Alu -1 311 58 258 224 118 26 chr6 16493193 16493269 -172786285 - MLT1L LTR MaLR -327 288 206 * 261 295 77 39 chr6 16493247 16493403 -172786151 - MLT1J LTR MaLR -348 163 2 238 186 80 53 chr6 16493403 16493516 -172786038 - L2 LINE L2 -1226 2088 1973 705 122 9 9 chr6 16493516 16493631 -172785923 + FLAM_C SINE Alu 25 139 -4 1770 151 0 18 chr6 16493654 16493938 -172785616 + AluSq SINE Alu 29 307 -6 342 247 22 116 chr6 16493944 16494158 -172785396 - L2 LINE L2 -1321 1993 1807 2413 73 20 0 chr6 16494158 16494458 -172785096 - AluY SINE Alu -5 306 1 342 247 22 116 chr6 16494458 16494510 -172785044 - L2 LINE L2 -1507 1807 1752 573 281 81 5 chr6 16494642 16494867 -172784687 + MIR SINE MIR 9 250 -12 2150 96 7 7 chr6 16495459 16495752 -172783802 + AluSq SINE Alu 1 293 -20 2313 101 0 0 chr6 16495832 16496130 -172783424 + AluSg SINE Alu 1 298 -12 571 249 36 18 chr6 16496219 16496384 -172783170 + MIR SINE MIR 21 188 -74 515 163 0 0 chr6 16496618 16496728 -172782826 - AluJb SINE Alu 0 312 203 408 56 42 56 chr6 16496804 16496852 -172782702 - MLT1B LTR MaLR -2 388 341 1288 208 26 58 chr6 16496852 16497160 -172782394 - AluJo SINE Alu -14 298 1 2313 73 3 17 chr6 16497166 16497478 -172782076 - AluSp SINE Alu 0 308 1 408 56 42 56 chr6 16497478 16497492 -172782062 - MLT1B LTR MaLR -54 336 319 183 206 37 19 chr6 16497567 16497674 -172781880 + GA-rich Low_complexity Low_complexity 2 110 0 4839 84 14 50 chr6 16497706 16497797 -172781757 - LTR8 LTR ERV1 0 691 598 2421 86 3 10 chr6 16497797 16498111 -172781443 + AluSp SINE Alu 2 313 0 4839 84 14 50 chr6 16498111 16498156 -172781398 - LTR8 LTR ERV1 -93 598 553 2127 95 0 7 chr6 16498156 16498477 -172781077 - AluY SINE Alu 0 319 1 4839 84 14 50 chr6 16498477 16498732 -172780822 - LTR8 LTR ERV1 -138 553 290 2298 71 10 7 chr6 16498732 16499028 -172780526 - AluY SINE Alu -14 297 1 4839 84 14 50 chr6 16499028 16499350 -172780204 - LTR8 LTR ERV1 -401 290 1 2052 152 0 0 chr6 16499439 16499741 -172779813 + AluSq SINE Alu 1 302 -11 200 282 43 133 chr6 16499895 16500020 -172779534 + MIR3 SINE MIR 16 120 -88 2081 131 0 16 chr6 16500020 16500333 -172779221 - AluSx SINE Alu -4 308 1 200 282 43 133 chr6 16500333 16500395 -172779159 + MIR3 SINE MIR 120 186 -22 1973 145 0 0 chr6 16500533 16500836 -172778718 - AluSx SINE Alu 0 304 2 864 69 9 0 chr6 16500948 16501064 -172778490 - AluY SINE Alu -8 303 187 1065 175 0 0 chr6 16501766 16501932 -172777622 + AluJo SINE Alu 1 166 -146 3577 114 15 9 chr6 16501932 16502260 -172777294 + MER41A LTR ERV1 1 336 -218 2354 72 0 14 chr6 16502260 16502578 -172776976 + AluY SINE Alu 1 314 0 3577 114 15 9 chr6 16502578 16502773 -172776781 + MER41A LTR ERV1 336 528 -26 918 152 0 0 chr6 16502780 16502931 -172776623 + FRAM SINE Alu 1 40 0 198 103 0 0 chr6 16503839 16503868 -172775686 + (TA)n Simple_repeat Simple_repeat 1 29 0 2069 87 4 4 chr6 16503868 16504132 -172775422 - AluSp SINE Alu -49 264 1 2201 113 13 0 chr6 16504363 16504664 -172774890 - AluSx SINE Alu -4 308 4 387 270 228 21 chr6 16504757 16505135 -172774419 - L2 LINE L2 -13 3300 2845 2197 101 29 26 chr6 16505135 16505308 -172774246 + MER41A LTR ERV1 1 172 -463 2302 92 20 0 chr6 16505308 16505612 -172773942 + AluSq SINE Alu 1 310 -3 2197 101 29 26 chr6 16505612 16505927 -172773627 + MER41A LTR ERV1 172 528 -107 520 265 11 77 chr6 16505987 16506065 -172773489 - L2 LINE L2 -663 2651 2569 2324 100 7 0 chr6 16506065 16506374 -172773180 + AluY SINE Alu 1 311 0 520 265 11 77 chr6 16506374 16506567 -172772987 - L2 LINE L2 -745 2569 2398 291 221 197 8 chr6 16506593 16506720 -172772834 + MIR SINE MIR 112 262 0 1988 69 127 22 chr6 16506761 16507036 -172772518 - AluSx SINE Alu -8 304 1 2118 124 0 10 chr6 16507050 16507348 -172772206 + AluSx SINE Alu 1 295 -17 619 248 10 13 chr6 16507554 16507745 -172771809 + MER63 DNA MER1_type 19 1688 0 2325 95 3 0 chr6 16507861 16508156 -172771398 + AluSq SINE Alu 1 296 -17 2471 74 0 0 chr6 16508162 16508501 -172771053 - AluY SINE Alu 0 339 1 294 273 0 0 chr6 16508509 16508575 -172770979 - L2 LINE L2 -4 3268 3203 197 194 0 0 chr6 16508875 16508911 -172770643 + L2 LINE L2 3271 3306 -7 789 234 90 78 chr6 16509018 16509291 -172770263 + L1MC5 LINE L1 7391 7659 -302 2116 125 3 3 chr6 16509291 16509596 -172769958 - AluSq SINE Alu -8 305 1 789 234 90 78 chr6 16509596 16509845 -172769709 + L1MC5 LINE L1 7659 7922 -39 1455 184 11 4 chr6 16509845 16510111 -172769443 + AluJb SINE Alu 3 270 -42 789 234 90 78 chr6 16510111 16510122 -172769432 + L1MC5 LINE L1 7922 7931 -30 2331 81 3 7 chr6 16510171 16510469 -172769085 - AluSp SINE Alu -16 297 1 1331 201 26 36 chr6 16510508 16510640 -172768914 + AluJb SINE Alu 1 133 -179 2014 103 65 7 chr6 16510640 16510932 -172768622 + AluSg SINE Alu 2 310 0 1331 201 26 36 chr6 16510932 16511102 -172768452 + AluJb SINE Alu 133 300 -12 2074 105 0 54 chr6 16511102 16511416 -172768138 + AluSx SINE Alu 1 297 -15 2095 112 3 17 chr6 16511437 16511733 -172767821 + AluSx SINE Alu 6 297 -15 2410 78 3 0 chr6 16511920 16512216 -172767338 - AluY SINE Alu -14 297 1 25 51 0 0 chr6 16512702 16512741 -172766813 + AT_rich Low_complexity Low_complexity 1 39 0 2038 110 7 10 chr6 16512778 16513069 -172766485 - AluSx SINE Alu -22 290 1 2172 103 13 0 chr6 16513276 16513577 -172765977 + AluSp SINE Alu 1 305 -8 2125 126 3 7 chr6 16513809 16514111 -172765443 + AluSq SINE Alu 1 301 -12 2038 129 26 22 chr6 16514129 16514257 -172765297 + AluSx SINE Alu 1 127 -185 2371 82 3 0 chr6 16514257 16514560 -172764994 + AluY SINE Alu 1 304 -7 2038 129 26 22 chr6 16514560 16514742 -172764812 + AluSx SINE Alu 127 312 0 265 121 0 167 chr6 16514751 16514817 -172764737 - MLT1G1 LTR MaLR 0 595 541 1075 156 31 0 chr6 16515026 16515186 -172764368 - FRAM SINE Alu -13 163 1 331 269 92 13 chr6 16515186 16515240 -172764314 - MLT1H1 LTR MaLR -353 237 189 2425 87 0 13 chr6 16515240 16515551 -172764003 - AluSx SINE Alu -4 308 2 331 269 92 13 chr6 16515551 16515668 -172763886 - MLT1H1 LTR MaLR -401 189 55 2371 71 0 0 chr6 16515975 16516257 -172763297 + AluY SINE Alu 2 283 -28 429 58 0 0 chr6 16516205 16516257 -172763297 + AluYa5/8 SINE Alu 232 330 0 220 43 21 43 chr6 16516257 16516304 -172763250 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 808 171 0 0 chr6 16516401 16516518 -172763036 - FLAM_C SINE Alu -16 127 11 2549 35 0 10 chr6 16517319 16517633 -172761921 + AluY SINE Alu 1 311 0 2116 87 17 0 chr6 16517768 16518056 -172761498 - AluSp SINE Alu -20 293 1 449 97 0 0 chr6 16518288 16518360 -172761194 - AluSp/q SINE Alu -2 311 240 728 161 12 54 chr6 16518495 16518663 -172760891 - BC200 scRNA scRNA -38 162 2 1117 88 23 23 chr6 16519079 16519250 -172760304 - AluY SINE Alu -7 304 134 709 128 37 0 chr6 16519431 16519540 -172760014 + AluJb SINE Alu 5 117 -195 191 228 11 109 chr6 16519672 16519764 -172759790 - L2 LINE L2 -70 3243 3161 2143 103 13 0 chr6 16519799 16520099 -172759455 + AluSc SINE Alu 1 304 -5 1984 128 13 0 chr6 16520180 16520478 -172759076 + AluSx SINE Alu 1 302 -10 538 241 69 52 chr6 16520577 16520751 -172758803 - MER5A DNA MER1_type -6 183 7 2047 128 3 3 chr6 16520849 16521161 -172758393 - AluSx SINE Alu 0 312 1 388 164 60 0 chr6 16521305 16521372 -172758182 + AluJ/FLAM SINE Alu 1 71 -231 2192 97 10 0 chr6 16521372 16521670 -172757884 - AluSx SINE Alu -11 301 1 1888 124 28 0 chr6 16521670 16521960 -172757594 - AluSx SINE Alu -14 298 1 256 167 0 74 chr6 16522817 16522871 -172756683 + Alu SINE Alu 1 50 -252 258 311 142 0 chr6 16522980 16523057 -172756497 - L2 LINE L2 0 3313 3216 1880 139 23 0 chr6 16523057 16523360 -172756194 + AluSx SINE Alu 1 310 -2 258 311 142 0 chr6 16523360 16523388 -172756166 - L2 LINE L2 -97 3216 3193 416 265 41 0 chr6 16523405 16523503 -172756051 + MER81 DNA DNA 1 102 -12 1011 162 0 17 chr6 16523531 16523704 -172755850 + AluJo SINE Alu 1 170 -142 1082 112 0 0 chr6 16523706 16523885 -172755669 - AluSq SINE Alu 0 310 132 1772 127 4 0 chr6 16523885 16524181 -172755373 + AluSx SINE Alu 26 322 0 2335 71 0 0 chr6 16524183 16524479 -172755075 + AluY SINE Alu 1 296 -15 947 165 12 0 chr6 16524479 16524643 -172754911 + AluJb SINE Alu 134 299 -13 476 236 132 0 chr6 16524644 16524750 -172754804 - FLAM_A SINE Alu -13 120 1 236 138 0 62 chr6 16524861 16524926 -172754628 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 1937 130 3 0 chr6 16524931 16525215 -172754339 - AluSx SINE Alu -27 285 1 2271 72 0 37 chr6 16525273 16525594 -172753960 + AluY SINE Alu 1 309 -2 1685 158 15 0 chr6 16525599 16525871 -172753683 - AluJo SINE Alu -36 276 1 1909 171 8 40 chr6 16525876 16526054 -172753500 - MLT1B LTR MaLR -44 346 164 2162 92 0 20 chr6 16526054 16526360 -172753194 - AluSg SINE Alu -10 300 1 1457 158 10 65 chr6 16526360 16526528 -172753026 - AluJo SINE Alu -15 297 152 1834 126 28 0 chr6 16526528 16526814 -172752740 - AluSp SINE Alu -19 294 1 1457 158 10 65 chr6 16526814 16526955 -172752599 - AluJo SINE Alu -160 152 5 1909 171 8 40 chr6 16526955 16527127 -172752427 - MLT1B LTR MaLR -224 166 6 727 191 8 0 chr6 16527217 16527343 -172752211 + AluJo/FLAM SINE Alu 1 127 -185 1997 125 0 0 chr6 16527344 16527639 -172751915 - AluY SINE Alu -16 295 1 467 233 112 0 chr6 16527645 16527761 -172751793 - FLAM_A SINE Alu -4 129 1 1313 177 0 110 chr6 16527998 16528157 -172751397 - AluJb SINE Alu -20 292 117 2052 110 0 7 chr6 16528157 16528448 -172751106 - AluSg1 SINE Alu -18 291 3 1313 177 0 110 chr6 16528448 16528520 -172751034 - AluJb SINE Alu -195 117 105 2304 90 3 0 chr6 16528520 16528831 -172750723 - AluSp SINE Alu 0 313 2 1313 177 0 110 chr6 16528831 16528926 -172750628 - AluJb SINE Alu -207 105 1 220 242 113 16 chr6 16528927 16528989 -172750565 - L2 LINE L2 0 3272 3205 879 166 33 22 chr6 16529342 16529523 -172750031 - AluJo SINE Alu -10 302 120 1676 149 46 33 chr6 16529543 16529708 -172749846 - AluSx SINE Alu -6 306 134 2012 103 13 16 chr6 16529708 16530020 -172749534 - AluY SINE Alu 0 311 1 1676 149 46 33 chr6 16530020 16530156 -172749398 - AluSx SINE Alu -178 134 1 2979 155 49 49 chr6 16530179 16530696 -172748858 - MER21A LTR ERV1 0 931 412 1495 161 3 51 chr6 16530696 16530876 -172748678 - AluJo SINE Alu -5 307 147 1837 137 3 20 chr6 16530876 16531176 -172748378 - AluSx SINE Alu -15 297 3 1495 161 3 51 chr6 16531176 16531306 -172748248 - AluJo SINE Alu -165 147 12 2979 155 49 49 chr6 16531306 16531344 -172748210 - MER21A LTR ERV1 -518 413 376 227 185 261 31 chr6 16531349 16531414 -172748140 - MER21A LTR ERV1 -667 264 185 859 206 0 0 chr6 16531425 16531595 -172747959 + FRAM SINE Alu 2 171 -5 687 122 7 109 chr6 16531597 16531641 -172747913 - MER21A LTR ERV1 -748 183 136 2093 84 7 32 chr6 16531641 16531950 -172747604 + AluSp SINE Alu 1 301 -12 687 122 7 109 chr6 16531950 16532052 -172747502 - MER21A LTR ERV1 -795 136 52 1236 153 0 31 chr6 16532053 16532281 -172747273 + AluJb SINE Alu 1 221 -91 359 269 32 0 chr6 16532319 16532412 -172747142 - MIR3 SINE MIR -2 206 111 2217 98 3 3 chr6 16532626 16532932 -172746622 - AluSp SINE Alu -7 306 1 2174 103 0 0 chr6 16532939 16533230 -172746324 - AluSg SINE Alu -19 291 1 21 0 0 0 chr6 16533230 16533251 -172746303 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 16533773 16533796 -172745758 + (TA)n Simple_repeat Simple_repeat 1 23 0 195 42 0 0 chr6 16533796 16533820 -172745734 + (T)n Simple_repeat Simple_repeat 1 24 0 1949 118 14 0 chr6 16533898 16534194 -172745360 - AluSx SINE Alu -12 300 1 348 263 164 29 chr6 16534272 16534443 -172745111 + MLT1K LTR MaLR 395 588 0 2083 96 7 13 chr6 16535350 16535653 -172743901 - AluSg SINE Alu -9 301 1 2283 87 3 0 chr6 16535659 16535959 -172743595 - AluSp SINE Alu -12 301 1 481 286 44 28 chr6 16536206 16536388 -172743166 + MIR SINE MIR 34 218 -44 811 150 7 29 chr6 16536632 16536772 -172742782 - AluJo SINE Alu -175 137 1 248 318 12 12 chr6 16536773 16536858 -172742696 - MIR SINE MIR -57 151 67 1689 143 13 54 chr6 16536985 16537299 -172742255 - AluJb SINE Alu -11 301 1 180 0 0 0 chr6 16537893 16537913 -172741641 + (T)n Simple_repeat Simple_repeat 1 20 0 260 270 125 34 chr6 16538849 16538972 -172740582 - MIR SINE MIR -68 140 19 212 239 0 33 chr6 16540011 16540103 -172739451 + G-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr6 16540860 16540886 -172738668 + (CCG)n Simple_repeat Simple_repeat 3 28 0 233 232 16 65 chr6 16543060 16543245 -172736309 + (CGGG)n Simple_repeat Simple_repeat 3 178 0 21 0 0 0 chr6 16543444 16543465 -172736089 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 16543561 16543584 -172735970 + GC_rich Low_complexity Low_complexity 1 23 0 200 241 36 12 chr6 16543744 16543827 -172735727 + G-rich Low_complexity Low_complexity 3 87 0 1858 128 30 16 chr6 16545925 16546230 -172733324 - AluSx SINE Alu -3 309 1 1741 79 0 4 chr6 16546615 16546842 -172732712 + AluSg SINE Alu 5 230 -80 721 132 8 25 chr6 16546847 16546968 -172732586 + AluSg/x SINE Alu 170 288 -21 1997 108 0 14 chr6 16547982 16548277 -172731277 - AluSg SINE Alu -19 291 1 1570 99 22 13 chr6 16549672 16549904 -172729650 + AluSq SINE Alu 1 234 -79 180 97 0 0 chr6 16549919 16549950 -172729604 + (A)n Simple_repeat Simple_repeat 1 31 0 482 82 14 0 chr6 16550050 16550123 -172729431 - AluSc SINE Alu -6 303 230 1498 82 0 0 chr6 16550123 16550317 -172729237 - AluSc SINE Alu -115 194 1 278 273 112 62 chr6 16550884 16551045 -172728509 + MIR SINE MIR 76 244 -18 223 287 47 62 chr6 16551915 16552044 -172727510 - MIR SINE MIR -66 142 16 418 298 180 39 chr6 16552265 16552648 -172726906 - L1ME4a LINE L1 -159 5962 5526 412 222 116 86 chr6 16553216 16553414 -172726140 + MIR SINE MIR 21 224 -38 2214 99 0 0 chr6 16553416 16553710 -172725844 + AluSg SINE Alu 1 294 -16 2062 98 0 25 chr6 16556217 16556534 -172723020 - AluSc SINE Alu 0 309 1 2109 98 10 3 chr6 16556699 16556994 -172722560 - AluSg SINE Alu -13 297 1 355 208 3 67 chr6 16557083 16557190 -172722364 - AluJb SINE Alu -161 141 56 1534 171 44 32 chr6 16557190 16557448 -172722106 - L1MB7 LINE L1 -197 5987 5723 2078 78 34 20 chr6 16557448 16557743 -172721811 - AluSg SINE Alu -11 299 1 1534 171 44 32 chr6 16557743 16557828 -172721726 - L1MB7 LINE L1 -461 5723 5640 444 19 0 0 chr6 16557980 16558033 -172721521 + (TG)n Simple_repeat Simple_repeat 1 53 0 2360 76 0 0 chr6 16558506 16558807 -172720747 - AluSx SINE Alu -11 301 1 904 175 0 6 chr6 16558812 16558978 -172720576 - AluJb SINE Alu -17 295 131 282 29 0 0 chr6 16559521 16559556 -172719998 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 33 0 0 chr6 16559555 16559585 -172719969 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1214 128 29 166 chr6 16564277 16564621 -172714933 - AluJo SINE Alu -5 297 1 210 160 0 0 chr6 16565013 16565063 -172714491 + (TCCG)n Simple_repeat Simple_repeat 3 52 0 1981 111 4 0 chr6 16565066 16565346 -172714208 - AluSp SINE Alu -32 281 1 1747 152 30 3 chr6 16565581 16565883 -172713671 + AluSx SINE Alu 1 310 -2 212 224 282 12 chr6 16566177 16566262 -172713292 + MER5A DNA MER1_type 43 150 -39 * 318 226 16 0 chr6 16566203 16566265 -172713289 - MER5A DNA MER1_type -80 109 47 1414 157 3 124 chr6 16566442 16566632 -172712922 + AluJo SINE Alu 1 134 -168 1979 113 0 0 chr6 16566632 16566907 -172712647 + AluSx SINE Alu 1 275 -37 1414 157 3 124 chr6 16566907 16567054 -172712500 + AluJo SINE Alu 134 297 -5 253 296 141 56 chr6 16567379 16567521 -172712033 - MIR SINE MIR -1 261 108 343 74 0 56 chr6 16567668 16567722 -172711832 + MIR SINE MIR 110 160 -102 2209 105 3 0 chr6 16568334 16568642 -172710912 + AluSp SINE Alu 1 309 0 2244 100 0 3 chr6 16568845 16569144 -172710410 - AluSx SINE Alu -14 298 1 24 0 0 0 chr6 16570436 16570460 -172709094 + GC_rich Low_complexity Low_complexity 1 24 0 903 132 0 16 chr6 16572211 16572340 -172707214 - FLAM_C SINE Alu -16 127 1 1824 106 92 46 chr6 16572880 16573164 -172706390 + AluSx SINE Alu 1 297 -15 2512 75 0 0 chr6 16573219 16573525 -172706029 + AluY SINE Alu 1 306 -5 1931 133 0 68 chr6 16573701 16574025 -172705529 + AluSx SINE Alu 1 302 -10 276 246 137 9 chr6 16574155 16574294 -172705260 - L1ME LINE L1 -521 5641 5486 195 231 0 19 chr6 16574756 16574808 -172704746 + MIR SINE MIR 211 261 -1 2217 124 0 0 chr6 16575544 16575843 -172703711 - AluSx SINE Alu -13 299 1 330 296 122 57 chr6 16576754 16576839 -172702715 - L1ME LINE L1 -471 5699 5621 369 0 0 0 chr6 16576839 16576880 -172702674 + (TG)n Simple_repeat Simple_repeat 2 42 0 1634 161 44 18 chr6 16576880 16577154 -172702400 - AluSx SINE Alu -28 284 4 330 296 122 57 chr6 16577154 16577435 -172702119 - L1ME LINE L1 -548 5622 5290 317 149 35 11 chr6 16577445 16577532 -172702022 + CT-rich Low_complexity Low_complexity 2 90 0 2180 81 15 0 chr6 16577543 16577815 -172701739 - AluSp SINE Alu -37 276 1 2551 65 0 0 chr6 16577886 16578192 -172701362 - AluY SINE Alu -5 306 1 2274 93 0 7 chr6 16578256 16578556 -172700998 - AluY SINE Alu -13 298 1 324 264 83 67 chr6 16578565 16578620 -172700934 - L1ME LINE L1 -896 5250 5197 2391 89 0 7 chr6 16578620 16578922 -172700632 - AluY SINE Alu -11 300 1 324 264 83 67 chr6 16578922 16579059 -172700495 - L1ME LINE L1 -949 5197 5055 2071 91 87 0 chr6 16579427 16579702 -172699852 - AluSq SINE Alu -14 299 1 2352 82 0 44 chr6 16580022 16580340 -172699214 - AluSq SINE Alu -9 304 1 320 149 45 0 chr6 16580957 16581024 -172698530 - AluS SINE Alu 0 301 232 2229 114 3 0 chr6 16581168 16581465 -172698089 - AluSg SINE Alu -12 298 1 2496 54 0 7 chr6 16581494 16581790 -172697764 + AluY SINE Alu 1 294 -17 1171 86 5 65 chr6 16581871 16582084 -172697470 + AluSp SINE Alu 123 324 0 1259 249 72 19 chr6 16582141 16582555 -172696999 - Charlie4a DNA MER1_type -34 474 39 255 271 65 19 chr6 16582799 16582906 -172696648 + L2 LINE L2 3155 3266 -6 1873 179 85 25 chr6 16583023 16583425 -172696129 - MSTA LTR MaLR -2 426 1 869 96 26 0 chr6 16584331 16584446 -172695108 - FLAM_C SINE Alu -25 118 1 2018 127 38 0 chr6 16584490 16584781 -172694773 + AluSx SINE Alu 1 302 -10 492 214 232 6 chr6 16584921 16585089 -172694465 - L1ME2 LINE L1 -9 6155 5950 1330 205 128 0 chr6 16585100 16585451 -172694103 - L1ME2 LINE L1 -289 5875 5480 2165 96 0 7 chr6 16585553 16585835 -172693719 - AluY SINE Alu -31 280 1 1545 183 38 17 chr6 16585874 16586163 -172693391 + AluJo SINE Alu 1 295 -17 2340 48 21 17 chr6 16586947 16587236 -172692318 - AluY SINE Alu -21 290 1 328 301 0 0 chr6 16587363 16587466 -172692088 - L1ME LINE L1 -460 5661 5559 1432 207 7 20 chr6 16587587 16587887 -172691667 - AluSx SINE Alu -16 296 1 1080 144 0 18 chr6 16588180 16588347 -172691207 + AluY SINE Alu 132 295 -16 2152 97 3 17 chr6 16589108 16589398 -172690156 - AluSc SINE Alu -15 294 9 2594 65 0 0 chr6 16590026 16590334 -172689220 - AluY SINE Alu 0 311 4 1946 143 4 0 chr6 16590574 16590876 -172688678 - AluSg SINE Alu 0 304 2 567 194 21 35 chr6 16591456 16591600 -172687954 - L1MC4 LINE L1 -115 7927 7786 458 244 8 0 chr6 16591614 16591733 -172687821 - L1MC4 LINE L1 -1073 6969 6850 24 0 0 0 chr6 16592054 16592078 -172687476 + AT_rich Low_complexity Low_complexity 1 24 0 1980 95 51 4 chr6 16592078 16592351 -172687203 - AluSg1 SINE Alu -23 286 1 836 151 0 8 chr6 16592432 16592558 -172686996 - FLAM_C SINE Alu -18 125 1 2273 98 20 0 chr6 16593323 16593618 -172685936 + AluSx SINE Alu 4 304 -8 360 0 0 0 chr6 16595600 16595640 -172683914 + (TG)n Simple_repeat Simple_repeat 1 40 0 282 29 0 0 chr6 16595639 16595674 -172683880 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 2358 88 3 0 chr6 16597050 16597344 -172682210 + AluSx SINE Alu 1 295 -17 2092 110 41 3 chr6 16597648 16597940 -172681614 - AluSx SINE Alu -9 303 1 308 256 171 23 chr6 16598168 16598297 -172681257 - MER5A DNA MER1_type -8 181 34 493 237 79 13 chr6 16598890 16599042 -172680512 + MIR SINE MIR 79 240 -22 2552 67 3 13 chr6 16601241 16601554 -172678000 - AluSq SINE Alu -3 310 1 189 58 29 72 chr6 16601788 16601857 -172677697 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 2024 128 3 10 chr6 16601876 16602172 -172677382 + AluSg SINE Alu 1 294 -16 1444 144 53 4 chr6 16602179 16602422 -172677132 - AluSq SINE Alu -45 268 14 274 201 206 49 chr6 16604385 16604569 -172674985 + L1ME4a LINE L1 5754 5966 -155 220 286 0 0 chr6 16604569 16604618 -172674936 + (TATG)n Simple_repeat Simple_repeat 1 49 0 2416 82 3 3 chr6 16606212 16606517 -172673037 + AluSp SINE Alu 1 305 -8 2209 99 0 0 chr6 16606986 16607269 -172672285 - AluSg1 SINE Alu -26 283 1 275 232 106 53 chr6 16607279 16607298 -172672256 - L1MA10 LINE L1 -2 6332 6314 775 231 169 13 chr6 16607298 16607605 -172671949 - L1ME2 LINE L1 -9 6155 5801 263 256 90 0 chr6 16609296 16609374 -172670180 + L2 LINE L2 3188 3272 0 734 131 0 0 chr6 16609836 16609943 -172669611 + U6 snRNA snRNA 1 107 0 1409 126 190 16 chr6 16611044 16611291 -172668263 - AluSx SINE Alu -22 290 1 1565 128 124 8 chr6 16611461 16611718 -172667836 - AluSg1 SINE Alu -22 287 1 590 210 105 0 chr6 16611760 16611922 -172667632 + MIR SINE MIR 15 193 -69 1023 129 0 7 chr6 16612985 16613140 -172666414 + AluSq SINE Alu 142 295 -18 1476 152 72 45 chr6 16614311 16614601 -172664953 - AluSx SINE Alu -14 298 1 279 0 0 0 chr6 16615769 16615800 -172663754 + (TG)n Simple_repeat Simple_repeat 2 32 0 2164 103 23 3 chr6 16616700 16617001 -172662553 - AluSg SINE Alu -3 307 1 239 189 0 0 chr6 16617230 16617267 -172662287 + Alu SINE Alu 137 173 -129 227 233 163 39 chr6 16617377 16617506 -172662048 + MIR SINE MIR 71 215 -47 478 186 0 0 chr6 16618440 16618526 -172661028 - MLT1B LTR MaLR -304 86 1 1493 142 142 0 chr6 16618564 16618817 -172660737 + AluSg SINE Alu 5 293 -17 2482 61 10 13 chr6 16618817 16619127 -172660427 + AluY SINE Alu 1 309 -2 330 262 148 0 chr6 16619135 16619257 -172660297 - L1M4 LINE L1 -984 5162 5023 598 184 39 0 chr6 16619286 16619389 -172660165 - U6 snRNA snRNA 0 107 1 1147 191 89 68 chr6 16619409 16619702 -172659852 - AluJo SINE Alu 0 302 4 1588 217 99 14 chr6 16620595 16621028 -172658526 + Charlie1b DNA MER1_type 1 470 -53 249 240 219 0 chr6 16621040 16621136 -172658418 - L1MC5 LINE L1 -91 7870 7754 1185 195 61 12 chr6 16621161 16621407 -172658147 - AluJo SINE Alu -54 258 1 1698 186 3 0 chr6 16621421 16621716 -172657838 - AluSx SINE Alu -15 297 2 492 163 0 0 chr6 16622160 16622240 -172657314 - AluJ/FRAM SINE Alu -12 300 221 333 118 0 0 chr6 16622445 16622496 -172657058 + (TG)n Simple_repeat Simple_repeat 1 51 0 231 225 38 75 chr6 16623219 16623299 -172656255 - MIR SINE MIR -13 249 173 233 290 30 53 chr6 16623328 16623459 -172656095 + MIR SINE MIR 95 222 -40 1765 182 19 10 chr6 16625973 16626281 -172653273 + AluJb SINE Alu 1 311 -1 494 171 19 38 chr6 16626387 16626492 -172653062 + L1MC2 LINE L1 6060 6162 -182 1754 86 189 0 chr6 16626500 16626744 -172652810 + AluSp SINE Alu 1 290 -13 369 161 195 0 chr6 16626755 16626842 -172652712 + Tigger7 DNA MER2_type 9 112 -621 1491 158 62 121 chr6 16627776 16627847 -172651707 - L1MB7 LINE L1 0 6184 6110 2410 50 33 3 chr6 16627847 16628147 -172651407 - AluY SINE Alu -1 310 2 1491 158 62 121 chr6 16628147 16628473 -172651081 - L1MB7 LINE L1 -74 6110 5815 785 158 0 8 chr6 16628473 16628606 -172650948 - L1MB4 LINE L1 -6 6174 6043 1491 158 62 121 chr6 16628606 16628662 -172650892 - L1MB7 LINE L1 -369 5815 5757 1997 141 6 10 chr6 16630003 16630316 -172649238 - AluSx SINE Alu 0 312 1 1334 186 61 11 chr6 16630732 16630996 -172648558 + AluJo SINE Alu 6 282 -30 348 83 0 0 chr6 16631002 16631050 -172648504 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 680 137 23 61 chr6 16631624 16631755 -172647799 - FLAM_C SINE Alu -8 135 10 253 132 0 0 chr6 16631930 16631968 -172647586 - LTR1 LTR ERV1 0 785 748 13319 153 41 33 chr6 16632082 16634455 -172645099 + HUERS-P2 LTR ERV1 208 2679 -409 2260 91 10 0 chr6 16634455 16634751 -172644803 - AluSp SINE Alu -14 299 1 13319 153 41 33 chr6 16634751 16634881 -172644673 + HUERS-P2 LTR ERV1 2679 2806 -282 1084 167 0 0 chr6 16634882 16635056 -172644498 - AluSg/x SINE Alu -18 292 119 199 192 0 25 chr6 16635190 16635236 -172644318 - MIR SINE MIR -63 145 105 2100 98 9 68 chr6 16637842 16638167 -172641387 + AluSq SINE Alu 1 306 -7 234 0 0 0 chr6 16639021 16639047 -172640507 + (T)n Simple_repeat Simple_repeat 1 26 0 324 182 83 58 chr6 16639393 16639514 -172640040 - L1MB8 LINE L1 -9 6169 6046 21 0 0 0 chr6 16639754 16639775 -172639779 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 16640491 16640524 -172639030 + AT_rich Low_complexity Low_complexity 1 33 0 269 246 0 16 chr6 16640796 16640857 -172638697 + MIR SINE MIR 43 102 -160 2064 124 7 0 chr6 16641656 16641946 -172637608 - AluSg SINE Alu -14 296 5 1170 163 54 128 chr6 16642643 16642956 -172636598 - AluJb SINE Alu -11 291 2 25 53 0 18 chr6 16642971 16643000 -172636554 + AT_rich Low_complexity Low_complexity 1 30 -26 2269 108 0 0 chr6 16643000 16643306 -172636248 - AluSg SINE Alu -4 306 1 25 53 0 18 chr6 16643306 16643333 -172636221 + AT_rich Low_complexity Low_complexity 30 56 0 25 0 0 0 chr6 16643382 16643407 -172636147 + AT_rich Low_complexity Low_complexity 1 25 0 831 276 112 40 chr6 16645478 16645923 -172633631 + HsTC2 DNA Tc2 105 581 -1317 258 219 173 26 chr6 16646347 16646461 -172633093 + MIR SINE MIR 20 150 -58 1912 198 52 20 chr6 16647792 16648251 -172631303 - L1MB8 LINE L1 -344 5834 5361 1520 210 93 15 chr6 16648987 16649383 -172630171 + MLT1D LTR MaLR 79 505 0 261 218 161 11 chr6 16649514 16649601 -172629953 - MIR SINE MIR -126 136 37 197 100 50 50 chr6 16649779 16649819 -172629735 - L2 LINE L2 -218 3054 3015 180 0 0 0 chr6 16650130 16650150 -172629404 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 1596 208 79 41 chr6 16650441 16650534 -172629020 - L1MB5 LINE L1 -17 6157 6069 1929 147 3 0 chr6 16650534 16650827 -172628727 - AluSx SINE Alu -18 294 1 1596 208 79 41 chr6 16650827 16651262 -172628292 - L1MB5 LINE L1 -105 6069 5577 958 253 169 27 chr6 16650849 16651374 -172628180 - L1MC4 LINE L1 -1993 6049 5450 * 2094 133 10 0 chr6 16651649 16651957 -172627597 + AluSx SINE Alu 1 311 -1 1598 166 95 0 chr6 16654620 16654903 -172624651 - AluSq SINE Alu -3 310 1 31 58 0 0 chr6 16655057 16655109 -172624445 + AT_rich Low_complexity Low_complexity 1 52 0 1939 124 14 21 chr6 16655109 16655399 -172624155 - AluSg SINE Alu -22 288 1 1351 197 3 72 chr6 16655401 16655721 -172623833 - AluJo SINE Alu -14 298 1 647 274 181 0 chr6 16656021 16656313 -172623241 + L2 LINE L2 2429 2773 -541 1736 156 44 3 chr6 16656809 16657104 -172622450 - AluSx SINE Alu -5 307 1 296 217 388 0 chr6 16658184 16658313 -172621241 + MER5A DNA MER1_type 1 179 -10 188 200 25 0 chr6 16658549 16658589 -172620965 + MIR SINE MIR 103 143 -65 788 224 87 20 chr6 16659688 16659884 -172619670 + MER3 DNA MER1_type 1 209 0 195 125 0 0 chr6 16661415 16661455 -172618099 + (G)n Simple_repeat Simple_repeat 1 40 0 213 333 30 0 chr6 16662113 16662212 -172617342 - L3 LINE CR1 -166 1411 1310 297 289 24 12 chr6 16663492 16663575 -172615979 + L3 LINE CR1 1127 1210 -367 334 261 231 0 chr6 16663783 16663917 -172615637 - MER5A DNA MER1_type 0 189 25 369 200 60 10 chr6 16665034 16665134 -172614420 - L2 LINE L2 -4 3268 3164 2278 61 16 39 chr6 16665247 16665557 -172613997 - AluY SINE Alu -8 303 1 1949 114 21 11 chr6 16667289 16667570 -172611984 - AluSg SINE Alu -26 284 1 2097 136 3 0 chr6 16667614 16667923 -172611631 - AluSg SINE Alu 0 310 1 1738 164 0 27 chr6 16671355 16671647 -172607907 + AluJo SINE Alu 6 289 -23 254 290 14 0 chr6 16671863 16671932 -172607622 + (TG)n Simple_repeat Simple_repeat 1 70 0 2227 89 123 0 chr6 16672062 16672378 -172607176 - THE1A LTR MaLR 0 355 1 951 132 0 0 chr6 16672416 16672545 -172607009 - AluSg SINE Alu -46 266 138 263 132 0 118 chr6 16672545 16672613 -172606941 + AluJo SINE Alu 94 153 -149 849 132 0 0 chr6 16672617 16672738 -172606816 - AluSg SINE Alu -179 131 11 2183 109 3 13 chr6 16672791 16673103 -172606451 - AluSc SINE Alu 0 309 1 25 0 0 0 chr6 16673106 16673131 -172606423 + AT_rich Low_complexity Low_complexity 1 25 0 228 304 0 88 chr6 16673471 16673573 -172605981 - MIR SINE MIR -95 113 21 418 238 186 26 chr6 16674589 16674782 -172604772 - MIR SINE MIR -18 244 21 2013 123 3 14 chr6 16674966 16675251 -172604303 - AluSx SINE Alu -30 282 1 193 54 0 54 chr6 16675927 16675964 -172603590 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2227 48 62 24 chr6 16675988 16676280 -172603274 + AluY SINE Alu 1 303 -8 429 179 123 49 chr6 16676712 16676874 -172602680 - MER104 DNA Tc2 0 180 7 1942 112 76 0 chr6 16676918 16677195 -172602359 + AluSg SINE Alu 1 298 -12 251 234 13 26 chr6 16677472 16677549 -172602005 - MIR3 SINE MIR -7 201 126 672 217 16 0 chr6 16678085 16678214 -172601340 - FLAM_A SINE Alu -1 132 2 382 270 123 10 chr6 16678299 16678503 -172601051 + L2 LINE L2 1584 1810 -1504 2234 104 13 0 chr6 16678712 16679010 -172600544 - AluSp SINE Alu -11 302 1 1169 186 53 0 chr6 16679012 16679238 -172600316 - AluJo SINE Alu -9 303 66 248 259 43 86 chr6 16679307 16679469 -172600085 + L2 LINE L2 2323 2477 -837 1035 181 111 48 chr6 16679508 16679778 -172599776 - AluJb SINE Alu -14 298 12 270 343 97 23 chr6 16679831 16680341 -172599213 + L2 LINE L2 2562 3149 -164 50 71 0 0 chr6 16680381 16680480 -172599074 + AT_rich Low_complexity Low_complexity 1 99 0 293 319 0 14 chr6 16681053 16681167 -172598387 - MIR SINE MIR -97 111 3 240 184 0 0 chr6 16681167 16681216 -172598338 + CT-rich Low_complexity Low_complexity 6 54 0 189 74 0 0 chr6 16681221 16681248 -172598306 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 202 123 97 chr6 16681403 16681538 -172598016 - FLAM_C SINE Alu 0 138 1 691 222 247 45 chr6 16682216 16682508 -172597046 - MLT1B LTR MaLR 0 390 24 231 165 24 35 chr6 16683489 16683574 -172595980 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 849 177 39 28 chr6 16684110 16684291 -172595263 - AluJb SINE Alu -45 267 85 375 23 0 0 chr6 16686956 16687000 -172592554 + (TG)n Simple_repeat Simple_repeat 2 45 0 627 241 31 42 chr6 16687476 16687597 -172591957 + MER3 DNA MER1_type 5 125 -84 2132 122 3 10 chr6 16687597 16687901 -172591653 - AluSq SINE Alu -11 302 1 627 241 31 42 chr6 16687901 16687970 -172591584 + MER3 DNA MER1_type 125 193 -16 255 194 56 14 chr6 16688597 16688669 -172590885 + L1ME4a LINE L1 5964 6038 -83 1330 186 68 21 chr6 16689249 16689529 -172590025 + AluJb SINE Alu 4 296 -16 226 286 48 0 chr6 16690067 16690130 -172589424 - L1ME LINE L1 -537 5584 5519 1569 124 120 8 chr6 16690231 16690481 -172589073 - AluY SINE Alu -33 278 1 988 109 0 0 chr6 16690484 16690612 -172588942 - AluSp SINE Alu -181 132 5 1820 124 4 4 chr6 16690613 16690871 -172588683 - AluSc SINE Alu -43 266 9 209 147 0 0 chr6 16691255 16691289 -172588265 - MIR SINE MIR -113 149 116 21 0 0 0 chr6 16691385 16691406 -172588148 + AT_rich Low_complexity Low_complexity 1 21 0 612 184 0 9 chr6 16691417 16691531 -172588023 - Tigger7 DNA MER2_type 0 2487 2375 821 213 63 6 chr6 16691546 16691720 -172587834 - Tigger7 DNA MER2_type -2301 186 3 406 273 48 94 chr6 16692600 16692974 -172586580 + L1ME3A LINE L1 5532 5888 -282 263 303 10 10 chr6 16694233 16694332 -172585222 + MIR3 SINE MIR 76 174 -34 204 214 0 0 chr6 16694403 16694459 -172585095 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 207 237 34 0 chr6 16694579 16694638 -172584916 + MIR SINE MIR 157 217 -45 226 239 0 0 chr6 16695801 16695847 -172583707 + CT-rich Low_complexity Low_complexity 2 47 0 198 0 0 0 chr6 16696815 16696837 -172582717 + (T)n Simple_repeat Simple_repeat 1 22 0 486 0 0 0 chr6 16699436 16699490 -172580064 + (CA)n Simple_repeat Simple_repeat 1 54 0 2161 114 0 0 chr6 16701070 16701351 -172578203 + AluSc SINE Alu 1 281 -28 1353 177 32 35 chr6 16701894 16702177 -172577377 + AluJo SINE Alu 1 282 -30 212 186 0 66 chr6 16702204 16702307 -172577247 + MER5A DNA MER1_type 20 188 -1 1859 157 42 0 chr6 16702898 16703185 -172576369 + AluJo SINE Alu 1 299 -13 565 229 199 19 chr6 16703440 16703707 -172575847 - MER33 DNA MER1_type -1 323 9 281 344 39 0 chr6 16705331 16705459 -172574095 - Charlie8 DNA MER1_type -2208 209 77 1870 152 22 4 chr6 16707242 16707518 -172572036 - AluSx SINE Alu -30 282 2 2294 89 23 0 chr6 16707925 16708228 -172571326 - AluSp SINE Alu -2 311 2 694 236 46 6 chr6 16708316 16708490 -172571064 - MSTD LTR MaLR 0 396 216 748 196 5 73 chr6 16708500 16708704 -172570850 - AluJo SINE Alu 0 312 123 970 142 13 7 chr6 16708704 16708859 -172570695 - MSTD LTR MaLR -237 159 4 21 82 0 0 chr6 16709681 16709730 -172569824 + AT_rich Low_complexity Low_complexity 1 49 0 6315 79 9 61 chr6 16709731 16710736 -172568818 - SVA Other Other -1 1385 433 5919 62 22 66 chr6 16710753 16711659 -172567895 - SVA Other Other -520 866 1 350 260 29 0 chr6 16712244 16712348 -172567206 + MIR SINE MIR 91 197 -65 1577 186 7 20 chr6 16712372 16712667 -172566887 + AluJb SINE Alu 1 291 -21 2069 94 20 10 chr6 16713133 16713431 -172566123 - AluSc SINE Alu -8 301 1 303 207 117 69 chr6 16714374 16714519 -172565035 - L1MEc LINE L1 -4646 1750 1599 2177 282 167 27 chr6 16714541 16715056 -172564498 - L1MEc LINE L1 -4759 1637 1196 2232 83 11 0 chr6 16715056 16715333 -172564221 + AluSg SINE Alu 18 297 -13 2177 282 167 27 chr6 16715333 16716244 -172563310 - L1MEc LINE L1 -5200 1196 11 1725 167 10 19 chr6 16717902 16718214 -172561340 - AluJb SINE Alu -3 309 1 822 165 0 0 chr6 16719051 16719184 -172560370 - FLAM_C SINE Alu 0 133 1 2198 98 0 3 chr6 16719492 16719777 -172559777 + AluSp SINE Alu 1 284 -29 1200 94 0 0 chr6 16719628 16719777 -172559777 + AluSp SINE Alu 136 314 0 191 0 67 0 chr6 16719777 16719807 -172559747 + (CAA)n Simple_repeat Simple_repeat 2 180 0 394 252 0 66 chr6 16719814 16719965 -172559589 - MIR SINE MIR -10 252 112 1179 205 151 29 chr6 16720345 16720696 -172558858 + MSTD LTR MaLR 1 394 -2 2669 49 0 6 chr6 16723193 16723520 -172556034 - L1PA5 LINE L1 -8 6146 5822 2146 134 0 0 chr6 16723541 16723847 -172555707 + AluSx SINE Alu 2 307 -5 1572 184 7 32 chr6 16724171 16724481 -172555073 - AluJo SINE Alu -6 306 5 1307 83 47 156 chr6 16726947 16727063 -172552491 - MER51A LTR ERV1 0 634 507 1775 155 14 4 chr6 16727063 16727340 -172552214 + AluSx SINE Alu 1 280 -32 1307 83 47 156 chr6 16727340 16727362 -172552192 - MER51A LTR ERV1 -127 507 484 291 28 0 0 chr6 16727362 16727398 -172552156 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1307 83 47 156 chr6 16727398 16727534 -172552020 - MER51A LTR ERV1 -150 484 389 457 101 157 22 chr6 16727590 16727679 -172551875 - MER51A LTR ERV1 -529 105 5 967 212 0 11 chr6 16727819 16728008 -172551546 - MER5A DNA MER1_type 0 189 3 369 0 0 0 chr6 16728327 16728368 -172551186 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 0 0 0 chr6 16728838 16728888 -172550666 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 0 0 0 chr6 16729056 16729083 -172550471 + AT_rich Low_complexity Low_complexity 1 27 0 258 364 130 5 chr6 16730122 16730306 -172549248 - L1MEd LINE L1 -5456 663 457 28 0 0 0 chr6 16730626 16730654 -172548900 + AT_rich Low_complexity Low_complexity 1 28 0 3732 134 96 23 chr6 16730842 16731574 -172547980 - LTR1 LTR ERV1 0 785 1 313 218 20 59 chr6 16732480 16732581 -172546973 - MER34 LTR ERV1 -14 528 432 881 74 0 0 chr6 16732629 16732737 -172546817 + AluSc SINE Alu 190 297 -12 2129 123 0 10 chr6 16733663 16733965 -172545589 + AluSx SINE Alu 1 299 -13 1756 83 46 12 chr6 16736682 16736955 -172542599 - AluSq SINE Alu 0 313 44 198 0 0 0 chr6 16739652 16739674 -172539880 + (T)n Simple_repeat Simple_repeat 1 22 0 404 221 147 32 chr6 16743746 16743936 -172535618 + MER5C DNA MER1_type 77 288 -36 1475 158 15 85 chr6 16744280 16744610 -172534944 + AluJo SINE Alu 1 307 -5 2367 98 0 0 chr6 16745079 16745385 -172534169 - AluSq SINE Alu -6 307 2 1788 103 0 66 chr6 16745782 16746053 -172533501 + AluSx SINE Alu 1 253 -59 219 36 0 0 chr6 16746056 16746084 -172533470 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 16747904 16747939 -172531615 + AT_rich Low_complexity Low_complexity 1 35 0 1199 252 121 34 chr6 16747974 16748538 -172531016 - L1MC4 LINE L1 -184 7858 7246 * 1455 226 55 30 chr6 16748522 16749056 -172530498 - L1MC4 LINE L1 -800 7080 6455 1445 158 6 76 chr6 16749379 16749695 -172529859 - AluJo SINE Alu -13 299 6 633 233 25 0 chr6 16749965 16750128 -172529426 + FRAM SINE Alu 1 165 -11 1331 118 126 0 chr6 16750179 16750417 -172529137 - L1MA5A LINE L1 0 6297 6030 2345 78 14 0 chr6 16750460 16750743 -172528811 - AluSx SINE Alu -24 288 2 342 236 186 67 chr6 16751807 16752167 -172527387 - L1ME4a LINE L1 0 6121 5719 222 267 35 12 chr6 16753978 16754064 -172525490 + MIR SINE MIR 90 177 -85 1675 188 24 18 chr6 16754122 16754463 -172525091 + MER2 DNA MER2_type 2 344 0 2155 103 0 14 chr6 16755597 16755921 -172523633 - AluSx SINE Alu 0 320 1 236 304 0 0 chr6 16757104 16757183 -172522371 - MER113 DNA MER1_type? -442 79 1 2076 148 0 3 chr6 16758337 16758648 -172520906 - AluSq SINE Alu -3 310 1 1735 170 11 0 chr6 16760088 16760370 -172519184 + AluJo SINE Alu 1 285 -27 2366 85 0 7 chr6 16760692 16761020 -172518534 - AluSx SINE Alu 0 312 1 1461 150 118 0 chr6 16762480 16762734 -172516820 + AluJo SINE Alu 5 288 -24 21 0 0 0 chr6 16763151 16763172 -172516382 + AT_rich Low_complexity Low_complexity 1 21 0 730 145 13 0 chr6 16764177 16764329 -172515225 + CT-rich Low_complexity Low_complexity 1 154 0 1126 84 0 89 chr6 16764340 16764530 -172515024 - AluY SINE Alu -3 308 136 2393 71 0 3 chr6 16764813 16765108 -172514446 + AluSc SINE Alu 1 294 -15 61 15 0 0 chr6 16766894 16766962 -172512592 + AT_rich Low_complexity Low_complexity 1 68 0 278 239 0 57 chr6 16769395 16769483 -172510071 + MIR SINE MIR 69 151 -111 189 0 0 0 chr6 16772421 16772442 -172507112 + (T)n Simple_repeat Simple_repeat 1 21 0 250 221 63 87 chr6 16773133 16773260 -172506294 + MIR SINE MIR 59 182 -80 230 139 0 0 chr6 16773303 16773339 -172506215 + MER2 DNA MER2_type 310 345 0 2179 105 20 3 chr6 16773587 16773881 -172505673 - AluSq SINE Alu -14 299 1 3382 221 101 50 chr6 16777188 16778421 -172501133 - Charlie1a DNA MER1_type -4 1451 155 1674 193 54 26 chr6 16778486 16778911 -172500643 - L1MB7 LINE L1 -340 5844 5408 606 234 32 6 chr6 16778911 16779069 -172500485 - Charlie1a DNA MER1_type -1293 162 1 228 213 293 0 chr6 16779526 16779601 -172499953 - MIR SINE MIR -107 155 59 639 197 204 29 chr6 16780308 16780582 -172498972 + L1MA7 LINE L1 5991 6312 0 306 324 0 19 chr6 16781443 16781548 -172498006 + MIR SINE MIR 158 260 -2 244 27 0 0 chr6 16781723 16781760 -172497794 - Alu SINE Alu -2 300 264 1808 133 64 25 chr6 16781801 16782162 -172497392 - THE1C LTR MaLR 0 375 1 206 182 18 36 chr6 16784758 16784813 -172494741 + CT-rich Low_complexity Low_complexity 3 56 0 255 321 107 0 chr6 16788153 16788293 -172491261 + MER5B DNA MER1_type 24 178 0 676 199 45 0 chr6 16789143 16789299 -172490255 + MER5A DNA MER1_type 1 163 -26 267 299 44 29 chr6 16789177 16789314 -172490240 - MER5A DNA MER1_type -27 162 24 * 2226 73 29 4 chr6 16789330 16789605 -172489949 - AluY SINE Alu -10 301 20 2380 46 42 7 chr6 16792297 16792582 -172486972 + AluY SINE Alu 2 296 -15 1668 161 29 29 chr6 16792731 16793041 -172486513 - MLT1B LTR MaLR -79 311 2 206 133 0 44 chr6 16795275 16795320 -172484234 + (TGAG)n Simple_repeat Simple_repeat 4 46 0 316 245 71 0 chr6 16795663 16795761 -172483793 + L2 LINE L2 3203 3307 -6 544 229 112 0 chr6 16796472 16796642 -172482912 - MSTD LTR MaLR 0 396 208 408 294 73 11 chr6 16798459 16798636 -172480918 + L2 LINE L2 3121 3308 -5 886 219 93 12 chr6 16801633 16801880 -172477674 - L1MB3 LINE L1 -284 5899 5633 228 75 0 50 chr6 16803590 16803630 -172475924 - L1MB7 LINE L1 -777 5403 5366 267 31 0 0 chr6 16803682 16803714 -172475840 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 703 179 62 34 chr6 16809599 16809778 -172469776 - MLT1B LTR MaLR -205 185 2 1105 184 161 19 chr6 16809961 16810228 -172469326 - AluJb SINE Alu -7 305 1 1258 159 174 15 chr6 16810428 16810692 -172468862 + AluJo SINE Alu 1 306 -6 1252 102 255 4 chr6 16810692 16810927 -172468627 + AluSg SINE Alu 3 296 -4 2196 99 10 7 chr6 16813404 16813698 -172465856 - AluSx SINE Alu -17 295 1 25 31 0 0 chr6 16815189 16815221 -172464333 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr6 16815597 16815623 -172463931 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr6 16815988 16816018 -172463536 + (A)n Simple_repeat Simple_repeat 1 30 0 292 174 29 58 chr6 16817148 16817217 -172462337 - 5S rRNA rRNA -54 67 1 380 217 183 17 chr6 16820235 16820350 -172459204 + L1ME3A LINE L1 518 651 -5468 567 318 123 37 chr6 16820482 16821081 -172458473 + L1ME3A LINE L1 739 1562 -928 394 239 102 68 chr6 16821816 16822109 -172457445 + L1ME3A LINE L1 2115 2417 -3712 324 267 143 24 chr6 16822264 16822474 -172457080 + L1ME3A LINE L1 2771 3005 -3124 1127 170 14 19 chr6 16823173 16823385 -172456169 - MER20 DNA MER1_type -5 214 4 602 294 68 59 chr6 16823496 16823708 -172455846 + L1ME3A LINE L1 5423 5632 -521 559 181 219 7 chr6 16823708 16823863 -172455691 + MER5A DNA MER1_type 2 189 0 602 294 68 59 chr6 16823863 16823919 -172455635 + L1ME3A LINE L1 5632 5686 -467 1898 143 10 3 chr6 16823919 16824212 -172455342 + AluJo SINE Alu 1 295 -17 602 294 68 59 chr6 16824212 16824367 -172455187 + L1ME3A LINE L1 5686 5851 -302 1484 203 34 23 chr6 16825818 16826168 -172453386 + MLT1A2 LTR MaLR 4 357 -17 2439 91 0 0 chr6 16826541 16826848 -172452706 - AluSc SINE Alu -2 307 1 304 314 142 15 chr6 16827277 16827614 -172451940 + L1ME4a LINE L1 5732 6111 -10 2315 93 10 0 chr6 16827614 16827915 -172451639 - AluSx SINE Alu -8 304 1 217 183 83 0 chr6 16828513 16828573 -172450981 + L2 LINE L2 2909 2973 -299 222 269 0 0 chr6 16828799 16828851 -172450703 + L2 LINE L2 3212 3263 -9 1582 147 54 109 chr6 16828852 16829275 -172450279 + L1MB3 LINE L1 5781 6180 -3 2392 77 0 26 chr6 16829286 16829596 -172449958 + AluSx SINE Alu 1 302 -10 1675 139 113 29 chr6 16829933 16830237 -172449317 + THE1C LTR MaLR 1 339 -36 2025 128 3 24 chr6 16830237 16830533 -172449021 - AluSx SINE Alu -22 290 1 1675 139 113 29 chr6 16830533 16830574 -172448980 + THE1C LTR MaLR 339 375 0 9418 119 39 48 chr6 16830574 16832055 -172447499 + THE1C-int LTR MaLR 1 1467 -113 2038 112 7 40 chr6 16832055 16832359 -172447195 + AluSg SINE Alu 1 294 -16 9418 119 39 48 chr6 16832359 16832472 -172447082 + THE1C-int LTR MaLR 1467 1580 0 1656 156 95 12 chr6 16832472 16832818 -172446736 + THE1C LTR MaLR 1 375 0 1584 246 36 24 chr6 16833058 16833525 -172446029 + MLT1E3 LTR MaLR 139 611 -13 321 291 132 24 chr6 16834514 16834765 -172444789 + LTR16C LTR ERVL 187 464 -27 233 293 47 28 chr6 16834812 16834918 -172444636 + MIR SINE MIR 126 233 -29 2331 88 0 3 chr6 16835563 16835858 -172443696 - AluY SINE Alu -17 294 1 2248 120 0 0 chr6 16837277 16837586 -172441968 - AluSc SINE Alu 0 309 1 2096 129 0 26 chr6 16837614 16837916 -172441638 - AluSx SINE Alu -18 294 1 639 230 171 15 chr6 16838137 16838396 -172441158 - L1MD3 LINE L1 0 7995 6068 273 91 45 0 chr6 16838428 16838472 -172441082 + LTR10B LTR ERV1 6 51 -496 2642 129 137 6 chr6 16838495 16838977 -172440577 + LTR10A LTR ERV1 1 545 -64 2440 194 34 2 chr6 16839019 16839492 -172440062 - L1MD3 LINE L1 -382 5977 5490 1086 169 0 11 chr6 16839526 16839715 -172439839 + MER46A DNA MER2_type 41 227 -9 2487 76 0 3 chr6 16840977 16841281 -172438273 - AluSg SINE Alu -7 303 1 231 114 0 0 chr6 16841825 16841860 -172437694 + (T)n Simple_repeat Simple_repeat 1 35 0 580 225 100 19 chr6 16842176 16842336 -172437218 - MER5A DNA MER1_type 0 189 17 453 19 0 0 chr6 16843345 16843399 -172436155 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr6 16843828 16843870 -172435684 + AT_rich Low_complexity Low_complexity 1 42 0 2402 83 0 19 chr6 16844121 16844434 -172435120 + AluSg SINE Alu 1 307 -3 747 171 0 0 chr6 16847422 16847539 -172432015 + FLAM_C SINE Alu 1 117 -26 915 92 0 0 chr6 16848099 16848219 -172431335 - MER72 LTR ERV1 -44 678 559 1348 199 49 107 chr6 16848682 16849160 -172430394 + MER39 LTR ERV1 1 599 -94 652 190 7 51 chr6 16849160 16849297 -172430257 - FLAM_C SINE Alu 0 133 3 1348 199 49 107 chr6 16849297 16849382 -172430172 + MER39 LTR ERV1 599 687 -6 4591 132 20 6 chr6 16849382 16850086 -172429468 - MER72 LTR ERV1 0 722 9 3906 122 38 22 chr6 16850216 16850841 -172428713 + MER41B LTR ERV1 1 635 0 3210 149 127 69 chr6 16850841 16851100 -172428454 + MER41B-int LTR ERV1 1 244 -5702 2375 88 7 0 chr6 16851100 16851396 -172428158 - AluSq SINE Alu -15 298 1 3210 149 127 69 chr6 16851396 16851829 -172427725 + MER41B-int LTR ERV1 244 733 -5213 * 9480 125 48 22 chr6 16851825 16853190 -172426364 + MER41B-int LTR ERV1 3025 4441 -1505 2314 92 17 0 chr6 16853190 16853483 -172426071 - AluSx SINE Alu -14 298 1 9480 125 48 22 chr6 16853483 16853733 -172425821 + MER41B-int LTR ERV1 4441 4683 -1263 9045 121 11 6 chr6 16853733 16854942 -172424612 + HSMAR1 DNA Mariner 1 1219 -68 2289 89 10 0 chr6 16854942 16855233 -172424321 + AluY SINE Alu 1 294 -17 9045 121 11 6 chr6 16855233 16855298 -172424256 + HSMAR1 DNA Mariner 1219 1282 -5 8364 117 13 23 chr6 16855298 16856569 -172422985 + MER41B-int LTR ERV1 4688 5946 0 4033 134 16 19 chr6 16856570 16857206 -172422348 + MER41B LTR ERV1 2 635 0 462 241 54 42 chr6 16857731 16857897 -172421657 + L2 LINE L2 2578 2745 -569 294 269 152 6 chr6 16857965 16858136 -172421418 + L2 LINE L2 2864 3059 -213 3847 182 31 49 chr6 16858173 16858307 -172421247 + L1MB7 LINE L1 5030 5165 -1019 3621 119 6 20 chr6 16858307 16858692 -172420862 + LTR26B LTR ERV1 1 377 -154 2031 109 32 51 chr6 16858692 16859003 -172420551 + AluSx SINE Alu 1 305 -7 3621 119 6 20 chr6 16859003 16859156 -172420398 + LTR26B LTR ERV1 377 531 0 3847 182 31 49 chr6 16859156 16859313 -172420241 + L1MB7 LINE L1 5165 5323 -861 2144 141 0 3 chr6 16859313 16859625 -172419929 - AluSx SINE Alu -1 311 1 3847 182 31 49 chr6 16859625 16859749 -172419805 + L1MB7 LINE L1 5323 5448 -736 1535 186 41 0 chr6 16859749 16860039 -172419515 + AluJo SINE Alu 1 302 -10 3847 182 31 49 chr6 16860039 16860774 -172418780 + L1MB7 LINE L1 5448 6174 -10 369 244 158 30 chr6 16860917 16860943 -172418611 + MIR SINE MIR 20 41 -221 4100 151 57 69 chr6 16860943 16860965 -172418589 + MER4D LTR ERV1 1 22 -881 2710 3 0 3 chr6 16860965 16861253 -172418301 + AluYa5 SINE Alu 17 303 -8 4100 151 57 69 chr6 16861253 16861618 -172417936 + MER4D LTR ERV1 22 390 -513 1866 142 42 0 chr6 16861618 16861907 -172417647 - AluSx SINE Alu -11 301 1 4100 151 57 69 chr6 16861907 16862089 -172417465 + MER4D LTR ERV1 390 573 -330 1757 179 7 0 chr6 16862089 16862369 -172417185 + AluJo SINE Alu 1 282 -30 360 0 0 0 chr6 16862374 16862414 -172417140 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4100 151 57 69 chr6 16862414 16862750 -172416804 + MER4D LTR ERV1 577 903 0 369 244 158 30 chr6 16862750 16862887 -172416667 + MIR SINE MIR 41 204 -58 1344 232 49 51 chr6 16862907 16863418 -172416136 + MER39 LTR ERV1 1 690 -17 447 116 0 43 chr6 16863420 16863489 -172416065 + Tigger2 DNA MER2_type 4 69 -2649 * 2440 133 76 19 chr6 16863479 16863901 -172415653 + Tigger2 DNA MER2_type 2273 2718 0 3761 119 22 22 chr6 16863937 16864559 -172414995 + LTR26E LTR ERV1 1 622 0 314 326 28 28 chr6 16864563 16864781 -172414773 + L2 LINE L2 2842 3059 -213 228 288 0 27 chr6 16864916 16864989 -172414565 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 1848 133 208 0 chr6 16865273 16865610 -172413944 + MER101 LTR ERV1 68 474 0 850 246 32 25 chr6 16865900 16866181 -172413373 + L1MC5 LINE L1 7634 7916 -45 386 272 174 0 chr6 16867037 16867221 -172412333 - MIR SINE MIR -10 252 37 467 250 41 35 chr6 16867434 16867606 -172411948 - MIR SINE MIR 0 262 90 1712 195 0 0 chr6 16867646 16867943 -172411611 - AluJb SINE Alu -10 302 6 601 192 54 8 chr6 16868453 16868583 -172410971 + FLAM_C SINE Alu 5 140 -3 2228 110 0 7 chr6 16868610 16868919 -172410635 - AluSg1 SINE Alu 0 309 3 2434 78 0 13 chr6 16871033 16871339 -172408215 - AluSx SINE Alu -10 302 1 285 160 0 0 chr6 16871350 16871400 -172408154 - MER113 DNA MER1_type? -321 200 151 1767 179 27 3 chr6 16871410 16871707 -172407847 + AluSx SINE Alu 1 304 -8 186 275 101 0 chr6 16871816 16871885 -172407669 - L2 LINE L2 -17 3296 3221 785 308 312 18 chr6 16872100 16873469 -172406085 - L2 LINE L2 -438 2876 1071 4982 124 50 16 chr6 16873692 16874440 -172405114 + L1MA5 LINE L1 5368 6154 -146 2301 99 3 10 chr6 16874440 16874744 -172404810 + AluSx SINE Alu 1 302 -10 4982 124 50 16 chr6 16874744 16874895 -172404659 + L1MA5 LINE L1 6154 6298 -2 248 337 77 12 chr6 16875149 16875318 -172404236 + L1ME4a LINE L1 5426 5605 -516 300 258 92 8 chr6 16875440 16875560 -172403994 + L1ME4a LINE L1 5831 5960 -161 190 262 0 0 chr6 16875692 16875734 -172403820 + L3 LINE CR1 893 934 -643 296 360 29 14 chr6 16875774 16875913 -172403641 + L3 LINE CR1 1058 1198 -379 2217 106 0 0 chr6 16876092 16876394 -172403160 - AluSg SINE Alu -8 302 1 2226 107 10 3 chr6 16876395 16876693 -172402861 - AluSx SINE Alu -10 302 3 396 263 105 12 chr6 16877173 16877291 -172402263 + MIR SINE MIR 9 135 -73 1968 135 0 10 chr6 16877899 16878195 -172401359 - AluJo SINE Alu -15 297 5 222 37 0 0 chr6 16879618 16879645 -172399909 + (T)n Simple_repeat Simple_repeat 1 27 0 183 100 0 0 chr6 16879870 16879900 -172399654 + (TA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr6 16879981 16880029 -172399525 + (TA)n Simple_repeat Simple_repeat 2 49 0 235 307 131 88 chr6 16881314 16882072 -172397482 + L2 LINE L2 1560 2349 -965 1604 190 63 123 chr6 16882085 16882754 -172396800 + L1MB8 LINE L1 4396 5024 -1122 * 1765 186 0 3 chr6 16882751 16883096 -172396458 + L1MB8 LINE L1 5490 5833 -345 206 400 30 15 chr6 16883152 16883287 -172396267 + L2 LINE L2 2607 2743 -571 194 350 33 42 chr6 16883508 16883628 -172395926 + L2 LINE L2 2763 2881 -433 2069 124 0 17 chr6 16884852 16885150 -172394404 - AluSx SINE Alu -19 293 1 264 341 82 14 chr6 16885192 16885400 -172394154 + L2 LINE L2 1876 2097 -1217 1984 93 33 43 chr6 16886027 16886328 -172393226 - AluSx SINE Alu -14 298 1 338 298 53 30 chr6 16887464 16887595 -172391959 - MIR3 SINE MIR -33 175 42 2328 98 0 13 chr6 16889097 16889413 -172390141 + AluSx SINE Alu 1 312 0 2465 89 0 6 chr6 16890169 16890483 -172389071 - AluSx SINE Alu 0 312 1 239 341 57 63 chr6 16890839 16891156 -172388398 - L2 LINE L2 -575 2739 2425 1457 279 203 0 chr6 16891277 16891936 -172387618 + L2 LINE L2 1808 2600 -714 275 295 122 58 chr6 16891967 16892245 -172387309 - L2 LINE L2 -2 3311 3016 506 286 125 0 chr6 16894153 16894345 -172385209 - MIR SINE MIR -11 251 36 39 50 0 0 chr6 16894706 16894766 -172384788 + AT_rich Low_complexity Low_complexity 1 60 0 480 296 111 5 chr6 16895170 16895369 -172384185 + MIR SINE MIR 29 248 -14 421 345 141 21 chr6 16895447 16896070 -172383484 - L2 LINE L2 -613 2701 2004 1957 107 4 7 chr6 16896521 16896792 -172382762 + AluSp SINE Alu 44 313 0 437 206 0 0 chr6 16896903 16896976 -172382578 + FRAM/FAM SINE Alu 1 69 -107 216 0 0 0 chr6 16896997 16897021 -172382533 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr6 16898186 16898214 -172381340 + AT_rich Low_complexity Low_complexity 1 28 0 392 246 52 37 chr6 16898322 16898456 -172381098 - L1MEc LINE L1 -5403 993 858 2169 251 94 7 chr6 16898465 16899190 -172380364 - L1MEc LINE L1 -5574 822 35 477 302 83 54 chr6 16900256 16900534 -172379020 + L2 LINE L2 2919 3204 -109 388 258 52 39 chr6 16901884 16901927 -172377627 + MER103 DNA DNA 3 44 -122 1971 132 42 0 chr6 16901927 16902215 -172377339 - AluSx SINE Alu -12 300 1 2305 108 0 0 chr6 16902221 16902517 -172377037 - AluSx SINE Alu -15 297 2 388 258 52 39 chr6 16902517 16902621 -172376933 + MER103 DNA DNA 48 159 -7 2335 260 126 75 chr6 16902785 16903257 -172376297 - HAL1 LINE L1 -64 2443 1997 225 0 0 0 chr6 16903257 16903282 -172376272 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2335 260 126 75 chr6 16903282 16904235 -172375319 - HAL1 LINE L1 -510 1997 875 2154 107 7 3 chr6 16904235 16904535 -172375019 - AluSg SINE Alu -9 301 1 2335 260 126 75 chr6 16904535 16905188 -172374366 - HAL1 LINE L1 -1632 875 257 12440 130 31 18 chr6 16905201 16907349 -172372205 + Tigger1 DNA MER2_type 237 2413 -5 404 154 173 19 chr6 16907530 16907634 -172371920 - MIR SINE MIR -20 242 123 215 351 106 39 chr6 16907688 16907896 -172371658 + L2 LINE L2 235 456 -2858 2264 101 19 3 chr6 16907942 16908249 -172371305 + AluSq SINE Alu 1 312 -1 2575 65 0 0 chr6 16908274 16908582 -172370972 - AluY SINE Alu -3 308 1 205 278 0 19 chr6 16908783 16908837 -172370717 + MER5A DNA MER1_type 8 60 -129 189 296 28 42 chr6 16908916 16908987 -172370567 + MER5B DNA MER1_type 85 154 -24 671 273 116 5 chr6 16909599 16909815 -172369739 - MIR SINE MIR -1 261 22 361 259 79 79 chr6 16911240 16911456 -172368098 - L2 LINE L2 -32 3240 3025 1612 125 16 22 chr6 16911675 16911996 -172367558 + L1PB4 LINE L1 4126 4444 -1702 607 163 98 24 chr6 16911996 16912119 -172367435 + AluJ SINE Alu 1 132 -180 3573 176 21 19 chr6 16912119 16912911 -172366643 + L1PB4 LINE L1 4469 5262 -884 543 135 23 60 chr6 16912901 16913034 -172366520 - L1M2 LINE L1 -631 5669 5542 * 1104 178 8 24 chr6 16913043 16913455 -172366099 + L1PB4 LINE L1 5267 6156 0 4736 129 38 5 chr6 16913460 16914271 -172365283 + L1MA5 LINE L1 5461 6298 -2 283 156 67 44 chr6 16914313 16914403 -172365151 + L1M4 LINE L1 5197 5288 -858 * 992 174 38 9 chr6 16914398 16914610 -172364944 + L1MC3 LINE L1 7399 7616 -169 922 90 7 0 chr6 16914689 16914833 -172364721 - L1MA1 LINE L1 -104 6198 6054 767 154 24 0 chr6 16915281 16915404 -172364150 - FLAM_C SINE Alu -7 126 1 203 297 47 16 chr6 16915765 16915829 -172363725 + MIR SINE MIR 127 192 -70 804 169 11 71 chr6 16918319 16918502 -172361052 + AluJ SINE Alu 137 308 -4 272 308 48 19 chr6 16918925 16919029 -172360525 + L2 LINE L2 3144 3250 -22 * 498 322 60 0 chr6 16919028 16919227 -172360327 - MIR SINE MIR -31 231 21 579 273 98 5 chr6 16921058 16921252 -172358302 + MIR SINE MIR 51 262 0 723 174 0 0 chr6 16921685 16921800 -172357754 - FLAM_A SINE Alu -18 115 1 222 167 0 33 chr6 16922708 16922768 -172356786 + A-rich Low_complexity Low_complexity 2 59 0 288 273 156 0 chr6 16922930 16923058 -172356496 + L3b LINE CR1 1316 1463 -120 2375 103 0 3 chr6 16923312 16923623 -172355931 - AluSq SINE Alu -3 310 1 244 310 159 44 chr6 16924075 16924188 -172355366 - L2 LINE L2 0 3272 3147 22 56 0 0 chr6 16924284 16924320 -172355234 + AT_rich Low_complexity Low_complexity 1 36 0 688 289 75 4 chr6 16924532 16924771 -172354783 - MIR SINE MIR 0 262 7 335 226 89 86 chr6 16925141 16925306 -172354248 - MIR SINE MIR -65 143 18 2384 75 0 7 chr6 16925552 16925847 -172353707 + AluSc SINE Alu 1 293 -16 308 254 122 37 chr6 16926392 16926581 -172352973 - L1ME3A LINE L1 -310 5929 5725 240 257 64 28 chr6 16926686 16926795 -172352759 - L1ME3A LINE L1 -470 5720 5608 455 285 54 14 chr6 16926879 16927100 -172352454 - L1ME3A LINE L1 -676 5555 5326 316 304 7 0 chr6 16927169 16927304 -172352250 - L1ME3A LINE L1 -1008 5207 5072 273 261 43 0 chr6 16927333 16927425 -172352129 + L1M4 LINE L1 4101 4196 -1950 384 280 136 8 chr6 16927530 16927773 -172351781 - L1ME3A LINE L1 -2122 4093 3820 4644 128 186 14 chr6 16928091 16928979 -172350575 + Tigger1 DNA MER2_type 1376 2416 -2 2007 142 0 3 chr6 16929252 16929534 -172350020 - AluSx SINE Alu -31 281 1 341 308 88 28 chr6 16929761 16929943 -172349611 - L1ME3A LINE L1 -4579 1817 1625 2162 103 14 0 chr6 16930039 16930330 -172349224 - AluSx SINE Alu -12 300 6 1166 277 137 40 chr6 16930377 16930511 -172349043 - L1ME3A LINE L1 -4862 1343 1223 319 228 13 0 chr6 16930511 16930590 -172348964 - MER116 DNA Mariner 0 80 1 1166 277 137 40 chr6 16930590 16931074 -172348480 - L1ME3A LINE L1 -4982 1223 787 2305 99 14 0 chr6 16931074 16931367 -172348187 - AluSx SINE Alu -15 297 1 1166 277 137 40 chr6 16931367 16931698 -172347856 - L1ME3A LINE L1 -5418 787 489 189 0 0 0 chr6 16931698 16931719 -172347835 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1166 277 137 40 chr6 16931719 16931905 -172347649 - L1ME3A LINE L1 -5716 489 96 2776 193 30 25 chr6 16932782 16933050 -172346504 + L1MC4a LINE L1 6781 7046 -762 2259 88 28 0 chr6 16933050 16933334 -172346220 - AluSg SINE Alu -18 292 1 2776 193 30 25 chr6 16933334 16933754 -172345800 + L1MC4a LINE L1 7046 7473 -335 951 184 32 0 chr6 16933755 16933913 -172345641 - AluJb SINE Alu -13 299 137 1224 229 82 3 chr6 16933915 16934234 -172345320 + L1MC4a LINE L1 7465 7808 0 221 366 24 0 chr6 16934635 16934717 -172344837 + L2 LINE L2 3189 3272 0 2604 176 56 14 chr6 16935589 16936105 -172343449 + L1M4c LINE L1 29 566 -5818 189 0 0 0 chr6 16936134 16936155 -172343399 + (TTTTTG)n Simple_repeat Simple_repeat 6 26 0 316 350 87 60 chr6 16936157 16936491 -172343063 + L1MB2 LINE L1 12 354 -6495 12618 224 30 20 chr6 16937219 16941175 -172338379 + L1P4 LINE L1 394 4504 -1719 273 57 0 0 chr6 16941175 16941210 -172338344 + (CA)n Simple_repeat Simple_repeat 2 36 0 12618 224 30 20 chr6 16941210 16942238 -172337316 + L1P4 LINE L1 4504 5520 -703 550 143 44 118 chr6 16942243 16942446 -172337108 + L1MB2 LINE L1 1446 1633 -5217 4714 205 75 25 chr6 16942446 16943858 -172335696 + L1MB2 LINE L1 3924 5406 -1442 3256 181 44 21 chr6 16943867 16944591 -172334963 + L1MB2 LINE L1 6131 6871 -2 1995 113 7 35 chr6 16945188 16945498 -172334056 - AluSq SINE Alu -12 301 1 1351 156 18 0 chr6 16945498 16945846 -172333708 - L1M4 LINE L1 -738 5440 5089 23 33 0 0 chr6 16947058 16947088 -172332466 + AT_rich Low_complexity Low_complexity 1 30 0 1768 152 7 7 chr6 16947109 16947398 -172332156 - AluJo SINE Alu -23 289 1 182 216 81 0 chr6 16947493 16947530 -172332024 - L2 LINE L2 -11 3302 3263 1510 196 28 11 chr6 16947553 16947839 -172331715 - AluJo SINE Alu -21 291 1 484 263 84 22 chr6 16948695 16948874 -172330680 - MER91B DNA MER1_type 0 190 1 240 282 59 35 chr6 16949685 16949887 -172329667 + L1MC5 LINE L1 7528 7734 -227 1912 149 0 10 chr6 16950046 16950341 -172329213 - AluJo SINE Alu -20 292 1 244 281 0 0 chr6 16950502 16950584 -172328970 + A-rich Low_complexity Low_complexity 1 82 0 206 221 73 29 chr6 16950907 16950975 -172328579 + MIR SINE MIR 121 191 -71 1409 153 9 0 chr6 16951470 16951686 -172327868 + AluJb SINE Alu 87 304 -8 540 186 0 62 chr6 16952596 16952709 -172326845 + L2 LINE L2 3207 3312 -1 193 239 0 113 chr6 16953126 16953197 -172326357 + L2 LINE L2 3210 3272 0 598 118 39 94 chr6 16954428 16954464 -172325090 - FLAM_A SINE Alu -169 142 106 2330 102 0 3 chr6 16954464 16954768 -172324786 - AluSg SINE Alu -7 303 1 598 118 39 94 chr6 16954768 16954858 -172324696 - FLAM_A SINE Alu -205 106 23 780 191 6 25 chr6 16956124 16956281 -172323273 + FRAM SINE Alu 1 154 -12 2019 76 47 4 chr6 16956294 16956570 -172322984 + AluSg SINE Alu 1 288 -22 494 251 129 12 chr6 16956755 16956918 -172322636 - MIR SINE MIR -52 210 29 431 204 164 7 chr6 16956925 16957077 -172322477 - MER5B DNA MER1_type -2 176 1 186 143 0 0 chr6 16957597 16957632 -172321922 + (CGGGG)n Simple_repeat Simple_repeat 3 37 0 265 291 17 8 chr6 16957851 16957968 -172321586 + C-rich Low_complexity Low_complexity 3 120 0 271 299 47 9 chr6 16958238 16958345 -172321209 + MIR SINE MIR 43 153 -109 * 1574 289 91 47 chr6 16958340 16959311 -172320243 + L2 LINE L2 1795 2807 -507 180 0 0 0 chr6 16959392 16959412 -172320142 + (T)n Simple_repeat Simple_repeat 1 20 0 832 138 12 12 chr6 16959682 16959842 -172319712 - MER96B DNA MER1_type? -20 397 238 386 245 11 11 chr6 16959902 16959996 -172319558 + L2 LINE L2 3178 3271 -1 22 88 0 0 chr6 16960805 16960862 -172318692 + AT_rich Low_complexity Low_complexity 1 57 0 2327 106 0 0 chr6 16961098 16961400 -172318154 - AluSx SINE Alu -9 303 2 529 238 150 12 chr6 16961492 16961652 -172317902 + MER5A DNA MER1_type 7 188 -1 7007 29 48 0 chr6 16961770 16962711 -172316843 + L1PA4 LINE L1 5174 6155 0 661 216 22 44 chr6 16963853 16964034 -172315520 - MER5B DNA MER1_type -1 177 1 210 23 70 23 chr6 16964310 16964353 -172315201 + T-rich Low_complexity Low_complexity 2 46 0 258 163 0 0 chr6 16964451 16964494 -172315060 + MER34 LTR ERV1 1 43 -499 1121 212 60 44 chr6 16964568 16964954 -172314600 + MER39 LTR ERV1 296 687 -20 212 250 105 13 chr6 16966315 16966391 -172313163 - MIR SINE MIR -1 261 179 873 186 6 13 chr6 16966512 16966668 -172312886 + AluJb SINE Alu 137 291 -21 217 238 95 0 chr6 16968833 16968896 -172310658 - MIR3 SINE MIR -11 197 129 2161 114 7 0 chr6 16969053 16969350 -172310204 + AluSq SINE Alu 1 299 -14 234 217 76 22 chr6 16971404 16971496 -172308058 + LTR67 LTR ERVL 459 555 -2 397 283 131 16 chr6 16972250 16972441 -172307113 - MIR SINE MIR -10 252 40 593 281 172 40 chr6 16972625 16972893 -172306661 + MLT1H1 LTR MaLR 1 232 -323 225 0 0 0 chr6 16972893 16972918 -172306636 + (GA)n Simple_repeat Simple_repeat 1 25 0 593 281 172 40 chr6 16972918 16973149 -172306405 + MLT1H1 LTR MaLR 232 555 0 590 299 42 6 chr6 16973799 16973993 -172305561 - MIR SINE MIR -58 204 7 2002 151 3 3 chr6 16974132 16974430 -172305124 - AluSq SINE Alu -15 298 1 27 0 0 0 chr6 16975289 16975316 -172304238 + AT_rich Low_complexity Low_complexity 1 27 0 357 265 10 0 chr6 16975369 16975467 -172304087 + MIR SINE MIR 51 149 -113 2221 112 23 7 chr6 16975812 16976115 -172303439 + AluSx SINE Alu 1 308 -4 2313 102 0 0 chr6 16976243 16976537 -172303017 - AluSx SINE Alu -18 294 1 655 122 9 19 chr6 16976661 16976768 -172302786 - L1PA11 LINE L1 -5 6169 6064 545 226 89 47 chr6 16976988 16977223 -172302331 + MIR SINE MIR 8 252 -10 251 264 217 0 chr6 16978264 16978370 -172301184 - L2 LINE L2 0 3272 3144 184 268 207 0 chr6 16978935 16979017 -172300537 + L2 LINE L2 3168 3266 -6 231 140 0 0 chr6 16979188 16979238 -172300316 + (CA)n Simple_repeat Simple_repeat 1 50 0 468 269 122 38 chr6 16979552 16979790 -172299764 - LTR16A1 LTR ERVL 0 457 200 1058 150 0 40 chr6 16979842 16980015 -172299539 + Charlie3 DNA MER1_type 2 167 -2543 3221 110 89 20 chr6 16980019 16980511 -172299043 + MER1A DNA MER1_type 1 526 -1 416 193 34 11 chr6 16980712 16980800 -172298754 + L2 LINE L2 2231 2320 -994 576 268 51 75 chr6 16980800 16981095 -172298459 - MLT1H LTR MaLR 0 549 262 211 182 0 0 chr6 16981096 16981129 -172298425 + polypurine Low_complexity Low_complexity 3 35 0 579 292 49 52 chr6 16981189 16981456 -172298098 - MER57B LTR ERV1 -168 266 1 551 192 88 0 chr6 16981456 16981581 -172297973 - MLT1H LTR MaLR -349 200 65 2283 36 4 14 chr6 16981662 16981941 -172297613 + AluY SINE Alu 17 292 -19 1582 64 0 20 chr6 16982218 16982421 -172297133 - AluY SINE Alu -7 304 106 774 122 0 0 chr6 16982421 16982528 -172297026 + AluJb SINE Alu 191 297 -15 2394 93 3 0 chr6 16983370 16983682 -172295872 + AluSq SINE Alu 1 313 0 532 215 137 17 chr6 16983830 16984053 -172295501 + MIR SINE MIR 15 262 0 2141 125 0 25 chr6 16984197 16984517 -172295037 + AluSx SINE Alu 1 312 0 842 208 64 101 chr6 16984555 16984853 -172294701 - MLT1C LTR MaLR 0 467 181 5725 133 60 33 chr6 16984853 16986388 -172293166 + pTR5 LTR ERV1 744 2438 0 370 178 0 27 chr6 16986424 16986497 -172293057 - MLT1C LTR MaLR -340 165 95 1692 126 0 8 chr6 16986988 16987227 -172292327 - AluSq SINE Alu -76 237 1 2836 13 0 0 chr6 16987460 16987766 -172291788 + AluYb8 SINE Alu 1 306 -12 696 214 112 29 chr6 16989291 16989497 -172290057 + LTR16B LTR ERVL 242 464 0 935 222 61 26 chr6 16989604 16990157 -172289397 + MLT2F LTR ERVL 3 663 0 2136 138 0 3 chr6 16990640 16990951 -172288603 - AluJb SINE Alu -2 310 1 678 242 31 0 chr6 16991625 16991786 -172287768 + L1ME3A LINE L1 5992 6157 -13 1155 261 67 17 chr6 16991916 16992276 -172287278 + MLT1I LTR MaLR 3 380 -29 578 251 213 0 chr6 16992463 16992674 -172286880 - MLT1L LTR MaLR -8 607 352 648 211 26 33 chr6 16992674 16992909 -172286645 - MER31-int LTR ERV1 -327 5936 4430 219 69 0 0 chr6 16992955 16992984 -172286570 + (CA)n Simple_repeat Simple_repeat 1 29 0 291 291 156 0 chr6 16993240 16993381 -172286173 + MIR SINE MIR 79 241 -21 282 292 0 0 chr6 16993408 16993504 -172286050 + MIR SINE MIR 166 261 -1 196 288 88 16 chr6 16994063 16994188 -172285366 - MIR SINE MIR -10 252 119 7414 191 58 100 chr6 16994891 16995048 -172284506 - L1MC4a LINE L1 -1 7807 7645 1694 186 14 10 chr6 16995048 16995344 -172284210 - AluJo SINE Alu -15 297 1 7414 191 58 100 chr6 16995344 16996076 -172283478 - L1MC4a LINE L1 -163 7645 6884 1858 186 0 0 chr6 16996076 16996377 -172283177 - AluJo SINE Alu -7 305 5 7414 191 58 100 chr6 16996377 16996834 -172282720 - L1MC4a LINE L1 -924 6884 6409 530 236 9 0 chr6 16996834 16996940 -172282614 + MER81 DNA DNA 1 107 -7 7414 191 58 100 chr6 16996940 16997285 -172282269 - L1MC4a LINE L1 -1399 6409 6051 2089 112 43 23 chr6 16997285 16997590 -172281964 - AluSx SINE Alu -1 311 1 7414 191 58 100 chr6 16997590 16998114 -172281440 - L1MC4a LINE L1 -1757 6051 5581 462 210 166 25 chr6 16998216 16998373 -172281181 + MER5A DNA MER1_type 4 182 -7 421 203 51 65 chr6 16998806 16998944 -172280610 + MER5B DNA MER1_type 17 152 -26 1976 142 41 16 chr6 16998966 16999332 -172280222 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr6 16999380 16999403 -172280151 + AT_rich Low_complexity Low_complexity 1 23 0 49 76 0 0 chr6 16999645 16999750 -172279804 + AT_rich Low_complexity Low_complexity 1 105 0 1121 310 73 17 chr6 16999752 17000384 -172279170 + L1ME4a LINE L1 5280 5946 -175 1741 184 70 48 chr6 17000481 17000937 -172278617 - MER31B LTR ERV1 0 466 1 2564 196 84 92 chr6 17000942 17001778 -172277776 - MER31B-int LTR ERV1 -25 4911 4083 2425 109 18 0 chr6 17001778 17002107 -172277447 + THE1B LTR MaLR 1 335 -29 1625 165 53 83 chr6 17002122 17002397 -172277157 - MER31B-int LTR ERV1 -906 4030 3812 806 181 0 0 chr6 17002397 17002524 -172277030 - FLAM_C SINE Alu -6 127 1 1625 165 53 83 chr6 17002524 17002663 -172276891 - MER31B-int LTR ERV1 -1124 3812 3670 1622 203 75 34 chr6 17002661 17002887 -172276667 - MER31B-int LTR ERV1 -2747 2189 1974 * 1860 164 0 7 chr6 17002887 17003179 -172276375 - AluJb SINE Alu -19 293 4 1622 203 75 34 chr6 17003179 17003488 -172276066 - MER31B-int LTR ERV1 -2962 1974 1632 1872 134 9 6 chr6 17003503 17003823 -172275731 - MER31B-int LTR ERV1 -3487 1449 1129 3101 213 45 41 chr6 17003832 17004588 -172274966 - MER31B-int LTR ERV1 -3981 955 197 515 128 73 37 chr6 17004563 17004672 -172274882 - MER31B-int LTR ERV1 -4655 281 169 * 2233 119 0 0 chr6 17004718 17005020 -172274534 - AluSx SINE Alu -10 302 1 582 220 53 8 chr6 17005071 17005203 -172274351 - MER31B-int LTR ERV1 -4764 172 35 1816 206 40 53 chr6 17005272 17005699 -172273855 - MER31B LTR ERV1 0 466 44 3920 39 0 0 chr6 17005699 17006164 -172273390 + L1PA4 LINE L1 5687 6151 -4 1816 206 40 53 chr6 17006164 17006208 -172273346 - MER31B LTR ERV1 -422 44 1 21 0 0 0 chr6 17006377 17006398 -172273156 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 17006439 17006473 -172273081 + AT_rich Low_complexity Low_complexity 1 34 0 629 204 15 75 chr6 17006750 17006951 -172272603 + MER53 DNA DNA 1 189 0 223 227 0 0 chr6 17007230 17007274 -172272280 + G-rich Low_complexity Low_complexity 1 44 0 530 303 120 8 chr6 17008285 17008519 -172271035 - MIR SINE MIR 0 262 3 1813 136 42 32 chr6 17008719 17009028 -172270526 + AluSx SINE Alu 1 312 0 431 301 23 27 chr6 17009514 17009733 -172269821 - Charlie8 DNA MER1_type -2190 227 10 360 0 0 0 chr6 17010598 17010638 -172268916 + (TG)n Simple_repeat Simple_repeat 2 41 0 1944 125 0 82 chr6 17011275 17011604 -172267950 - AluSg SINE Alu -8 302 1 812 241 176 0 chr6 17013303 17013564 -172265990 + LTR16A LTR ERVL 104 410 -40 245 353 74 0 chr6 17013799 17013921 -172265633 - MIR SINE MIR -48 214 84 259 291 118 8 chr6 17015025 17015152 -172264402 + MIR3 SINE MIR 64 204 -4 297 0 0 0 chr6 17015211 17015244 -172264310 + (TC)n Simple_repeat Simple_repeat 2 34 0 272 304 29 58 chr6 17015739 17015877 -172263677 + MIR SINE MIR 53 186 -76 1435 142 46 27 chr6 17015921 17016182 -172263372 - Tigger2 DNA MER2_type -2 2716 2451 1575 85 0 0 chr6 17016282 17016471 -172263083 - AluSq SINE Alu -123 190 2 485 232 155 13 chr6 17016563 17016718 -172262836 + MER5A DNA MER1_type 7 183 -6 7165 29 48 0 chr6 17016841 17017782 -172261772 + L1PA4 LINE L1 5174 6155 0 685 199 33 55 chr6 17018924 17019105 -172260449 - MER5B DNA MER1_type -1 177 1 210 23 70 23 chr6 17019381 17019424 -172260130 + T-rich Low_complexity Low_complexity 2 46 0 279 179 40 51 chr6 17019522 17019621 -172259933 + MER34 LTR ERV1 1 43 -499 1269 202 94 34 chr6 17019639 17020040 -172259514 + MER39 LTR ERV1 296 585 0 190 250 105 13 chr6 17021386 17021462 -172258092 - MIR SINE MIR -1 261 179 877 186 6 13 chr6 17021583 17021739 -172257815 + AluJb SINE Alu 137 291 -21 194 238 95 0 chr6 17023904 17023967 -172255587 - MIR3 SINE MIR -11 197 129 2185 114 7 0 chr6 17024124 17024421 -172255133 + AluSq SINE Alu 1 299 -14 273 217 76 22 chr6 17026475 17026567 -172252987 + LTR67 LTR ERVL 459 555 -2 388 283 131 16 chr6 17027321 17027512 -172252042 - MIR SINE MIR -10 252 40 765 298 119 34 chr6 17027696 17027964 -172251590 + MLT1F LTR MaLR 1 245 -297 225 0 0 0 chr6 17027964 17027989 -172251565 + (GA)n Simple_repeat Simple_repeat 1 25 0 765 298 119 34 chr6 17027989 17028214 -172251340 + MLT1F LTR MaLR 245 536 -6 577 297 43 5 chr6 17028870 17029055 -172250499 - MIR SINE MIR -58 204 13 1980 151 3 3 chr6 17029203 17029501 -172250053 - AluSq SINE Alu -15 298 1 27 0 0 0 chr6 17030360 17030387 -172249167 + AT_rich Low_complexity Low_complexity 1 27 0 392 283 80 14 chr6 17030400 17030538 -172249016 + MIR SINE MIR 3 149 -113 2207 112 23 7 chr6 17030883 17031186 -172248368 + AluSx SINE Alu 1 308 -4 2293 102 0 0 chr6 17031314 17031608 -172247946 - AluSx SINE Alu -18 294 1 690 122 9 19 chr6 17031732 17031839 -172247715 - L1PA11 LINE L1 -5 6169 6064 616 221 94 51 chr6 17032059 17032294 -172247260 + MIR SINE MIR 8 252 -10 288 264 217 0 chr6 17033335 17033441 -172246113 - L2 LINE L2 0 3272 3144 187 329 57 0 chr6 17033559 17033629 -172245925 - L2 LINE L2 -195 3077 3004 183 322 34 0 chr6 17033796 17033855 -172245699 + L2 LINE L2 2992 3052 -220 222 297 153 18 chr6 17033977 17034088 -172245466 + L2 LINE L2 3141 3266 -6 231 140 0 0 chr6 17034259 17034309 -172245245 + (CA)n Simple_repeat Simple_repeat 1 50 0 456 269 122 38 chr6 17034623 17034861 -172244693 - LTR16A1 LTR ERVL 0 457 200 1042 150 0 40 chr6 17034913 17035086 -172244468 + Charlie3 DNA MER1_type 2 167 -2543 3416 110 89 20 chr6 17035090 17035582 -172243972 + MER1A DNA MER1_type 1 526 -1 445 193 34 11 chr6 17035783 17035871 -172243683 + L2 LINE L2 2231 2320 -994 576 268 51 75 chr6 17035871 17036166 -172243388 - MLT1H LTR MaLR 0 549 262 211 182 0 0 chr6 17036167 17036200 -172243354 + polypurine Low_complexity Low_complexity 3 35 0 580 292 49 52 chr6 17036260 17036527 -172243027 - MER57B LTR ERV1 -168 266 1 551 192 88 0 chr6 17036527 17036652 -172242902 - MLT1H LTR MaLR -349 200 65 2253 36 4 14 chr6 17036733 17037012 -172242542 + AluY SINE Alu 17 292 -19 2443 71 0 13 chr6 17037289 17037597 -172241957 - AluY SINE Alu -7 304 1 615 168 69 0 chr6 17037632 17037763 -172241791 - HsTC2 DNA Tc2 -178 1720 1581 279 208 0 0 chr6 17037779 17037832 -172241722 - HsTC2 DNA Tc2 -542 1356 1304 430 266 141 8 chr6 17037849 17037977 -172241577 - HsTC2 DNA Tc2 -1753 145 1 2290 73 42 0 chr6 17038014 17038302 -172241252 - AluY SINE Alu -11 300 1 739 222 130 17 chr6 17038591 17038821 -172240733 + MER2 DNA MER2_type 89 344 -1 2210 119 0 0 chr6 17038865 17039158 -172240396 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr6 17039215 17039256 -172240298 + AT_rich Low_complexity Low_complexity 1 41 0 1071 157 35 0 chr6 17039304 17039476 -172240078 + AluJb SINE Alu 109 286 -26 3657 156 19 3 chr6 17039500 17040091 -172239463 - L1MB5 LINE L1 -76 6098 5499 2098 96 0 4 chr6 17042002 17042303 -172237251 - AluSc SINE Alu 0 300 1 271 264 40 56 chr6 17042468 17042593 -172236961 - HAL1 LINE L1 -145 2362 2240 468 331 14 0 chr6 17042593 17042732 -172236822 - MIR SINE MIR -97 165 25 4029 102 10 142 chr6 17042761 17043092 -172236462 + LTR8 LTR ERV1 3 376 -315 2387 90 0 6 chr6 17043092 17043403 -172236151 + AluSg1 SINE Alu 1 309 0 4029 102 10 142 chr6 17043403 17043696 -172235858 + LTR8 LTR ERV1 376 502 -189 2626 55 0 0 chr6 17043696 17044007 -172235547 + AluY SINE Alu 1 311 0 4029 102 10 142 chr6 17044007 17044175 -172235379 + LTR8 LTR ERV1 502 691 0 2309 115 0 3 chr6 17044248 17044560 -172234994 + AluSx SINE Alu 1 311 -1 627 130 0 0 chr6 17044600 17044692 -172234862 + MER53 DNA DNA 23 114 -75 1241 197 87 79 chr6 17044744 17044870 -172234684 - MER39 LTR ERV1 0 707 583 1751 166 0 42 chr6 17044870 17045183 -172234371 + AluJo SINE Alu 1 300 -12 1241 197 87 79 chr6 17045183 17045437 -172234117 - MER39 LTR ERV1 -124 583 324 270 266 73 37 chr6 17045433 17045542 -172234012 - LTR48B LTR ERV1 -531 113 1 * 29 0 0 0 chr6 17045922 17045951 -172233603 + AT_rich Low_complexity Low_complexity 1 29 0 2331 108 3 16 chr6 17045951 17046267 -172233287 + AluSx SINE Alu 1 312 0 320 247 62 0 chr6 17046320 17046417 -172233137 + MIR SINE MIR 105 207 -55 957 251 114 80 chr6 17047258 17047970 -172231584 + L1ME4a LINE L1 5385 6120 -1 2005 179 59 42 chr6 17048554 17048979 -172230575 - MSTB1 LTR MaLR 0 432 1 541 149 0 43 chr6 17049362 17049456 -172230098 + FLAM_C SINE Alu 49 138 -5 2300 105 3 0 chr6 17050244 17050549 -172229005 - AluY SINE Alu -5 306 1 1689 179 43 0 chr6 17050718 17050998 -172228556 + AluJb SINE Alu 1 292 -20 1919 221 187 25 chr6 17051251 17051935 -172227619 + LTR50 LTR ERVL 1 795 0 1031 190 0 15 chr6 17052222 17052417 -172227137 - AluJo SINE Alu -8 304 113 2052 204 42 44 chr6 17052417 17052945 -172226609 - L1M4 LINE L1 -1057 5089 4563 2012 182 34 20 chr6 17052947 17053392 -172226162 - Charlie1a DNA MER1_type -529 926 476 1291 200 141 40 chr6 17053392 17053465 -172226089 + L1M4 LINE L1 2176 2240 -3906 1237 134 27 5 chr6 17053465 17053651 -172225903 + L1PA15 LINE L1 5976 6165 0 1291 200 141 40 chr6 17053651 17053952 -172225602 + L1M4 LINE L1 2240 2588 -3558 401 156 62 94 chr6 17053954 17054050 -172225504 - Charlie1a DNA MER1_type -962 493 401 14078 122 85 16 chr6 17054051 17054715 -172224839 + Tigger2 DNA MER2_type 2 619 -2099 2269 118 0 3 chr6 17054715 17055028 -172224526 + AluSx SINE Alu 1 312 0 14078 122 85 16 chr6 17055028 17056669 -172222885 + Tigger2 DNA MER2_type 619 2466 -252 998 97 7 13 chr6 17056666 17056820 -172222734 - Tigger2 DNA MER2_type -84 2634 2482 * 853 148 0 0 chr6 17056820 17056948 -172222606 + FLAM_C SINE Alu 11 138 -5 1957 206 9 45 chr6 17057005 17057427 -172222127 - Charlie1a DNA MER1_type -1048 407 1 594 110 49 0 chr6 17057432 17057514 -172222040 + AluSx SINE Alu 2 87 -226 741 147 0 0 chr6 17057521 17057637 -172221917 + Tigger2 DNA MER2_type 1780 1895 -823 1349 144 5 5 chr6 17057645 17057853 -172221701 + AluSx SINE Alu 88 295 -17 205 307 148 37 chr6 17058053 17058297 -172221257 - L2 LINE L2 -449 2865 2595 2065 153 30 12 chr6 17058733 17059066 -172220488 + MER7A DNA MER2_type 1 337 -9 2138 115 0 3 chr6 17059130 17059425 -172220129 - AluSq SINE Alu -19 294 1 1081 284 95 22 chr6 17059426 17059785 -172219769 + L2 LINE L2 2593 2977 -337 332 234 0 0 chr6 17059897 17059961 -172219593 + L2 LINE L2 3250 3313 0 211 176 0 0 chr6 17060090 17060124 -172219430 + C-rich Low_complexity Low_complexity 4 37 0 662 124 0 9 chr6 17060128 17060241 -172219313 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 2987 150 21 24 chr6 17060330 17060798 -172218756 + MLT1C LTR MaLR 1 467 0 2150 121 0 7 chr6 17060875 17061173 -172218381 - AluSx SINE Alu -16 296 1 185 308 13 83 chr6 17061337 17061403 -172218151 - L2 LINE L2 -210 3062 2993 2062 141 3 6 chr6 17061403 17061716 -172217838 - AluJo SINE Alu 0 312 1 185 308 13 83 chr6 17061716 17061805 -172217749 - L2 LINE L2 -279 2993 2918 946 251 207 16 chr6 17062125 17062511 -172217043 + LTR16B LTR ERVL 1 460 -4 1429 199 26 85 chr6 17063505 17063893 -172215661 + MLT1A1 LTR MaLR 1 365 0 357 268 188 35 chr6 17063912 17064381 -172215173 - L2 LINE L2 -1 3312 2742 191 271 43 86 chr6 17064533 17064603 -172214951 + L2 LINE L2 3242 3308 -5 276 236 56 0 chr6 17064958 17065030 -172214524 + LTR67 LTR ERVL 2 77 -480 551 284 7 0 chr6 17065288 17065443 -172214111 + LTR67 LTR ERVL 402 557 0 407 325 31 6 chr6 17066600 17066763 -172212791 + ERVL LTR ERVL 2738 2904 -2860 207 0 0 0 chr6 17066764 17066787 -172212767 + (TG)n Simple_repeat Simple_repeat 2 24 0 264 262 141 20 chr6 17066965 17067114 -172212440 + MLT1J LTR MaLR 1 167 -344 302 187 187 126 chr6 17067174 17067372 -172212182 + MLT1J LTR MaLR 277 486 -25 682 290 36 9 chr6 17067389 17067610 -172211944 + ERVL LTR ERVL 3027 3253 -2401 1016 279 113 22 chr6 17067669 17068260 -172211294 - L1M4 LINE L1 -1314 4832 4188 1231 121 6 0 chr6 17068285 17068458 -172211096 + AluSg/x SINE Alu 131 304 -8 290 275 30 53 chr6 17068485 17068616 -172210938 - L1M4 LINE L1 -1992 4154 4027 192 77 0 0 chr6 17068645 17068671 -172210883 + (TG)n Simple_repeat Simple_repeat 2 27 0 622 293 135 40 chr6 17068677 17069058 -172210496 - L1MC/D LINE L1 -683 5468 5125 2346 97 3 0 chr6 17069058 17069357 -172210197 - AluSp SINE Alu -13 300 1 622 293 135 40 chr6 17069357 17070555 -172208999 - L1MC/D LINE L1 -1026 5125 3875 24 0 0 0 chr6 17070626 17070650 -172208904 + AT_rich Low_complexity Low_complexity 1 24 0 407 316 76 46 chr6 17070767 17071308 -172208246 - L1MC/D LINE L1 -2421 3725 3169 711 153 18 92 chr6 17071655 17071818 -172207736 - MER106B DNA MER1_type -908 151 1 2704 104 30 3 chr6 17072624 17072989 -172206565 - THE1C LTR MaLR 0 375 1 1042 275 121 38 chr6 17073078 17073525 -172206029 + LTR33A LTR ERVL 2 485 -38 281 262 12 12 chr6 17073807 17073891 -172205663 + L2 LINE L2 3188 3271 -1 1780 191 110 45 chr6 17073948 17074017 -172205537 + Charlie4a DNA MER1_type 6 69 -1892 2302 79 13 23 chr6 17074017 17074321 -172205233 - AluY SINE Alu -10 301 1 2278 102 7 0 chr6 17074321 17074615 -172204939 - AluSx SINE Alu -16 296 1 1780 191 110 45 chr6 17074615 17075016 -172204538 + Charlie4a DNA MER1_type 68 508 0 315 275 194 25 chr6 17075043 17075203 -172204351 + MIR SINE MIR 49 235 -27 252 0 0 0 chr6 17075535 17075563 -172203991 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6951 63 40 25 chr6 17075563 17077345 -172202209 - SVA Other Other -518 1367 6 344 169 62 0 chr6 17077747 17077812 -172201742 + Tigger2 DNA MER2_type 1 69 -2649 * 1220 93 34 5 chr6 17077810 17078014 -172201540 + Tigger2 DNA MER2_type 2280 2489 -229 555 201 179 0 chr6 17178728 17178862 -172100692 + MER5A DNA MER1_type 9 166 -23 2114 116 0 23 chr6 17178889 17179190 -172100364 + AluSg SINE Alu 1 294 -16 314 203 0 40 chr6 17180172 17180246 -172099308 + 7SK RNA RNA 3 73 -120 214 155 0 28 chr6 17180780 17180851 -172098703 + (CA)n Simple_repeat Simple_repeat 1 69 0 3866 102 34 51 chr6 17180903 17181513 -172098041 + MER4A LTR ERV1 1 600 0 375 171 18 9 chr6 17181564 17181675 -172097879 + (CA)n Simple_repeat Simple_repeat 2 113 0 2255 109 0 0 chr6 17182128 17182435 -172097119 - AluSx SINE Alu 0 307 1 341 302 26 55 chr6 17182470 17182627 -172096927 + MIR SINE MIR 37 187 -75 2094 151 0 10 chr6 17182627 17182938 -172096616 - AluJb SINE Alu -4 308 1 341 302 26 55 chr6 17182938 17182981 -172096573 + MIR SINE MIR 187 230 -32 234 0 0 0 chr6 17183036 17183062 -172096492 + (CA)n Simple_repeat Simple_repeat 2 27 0 221 226 58 15 chr6 17183063 17183200 -172096354 + (TTATA)n Simple_repeat Simple_repeat 2 144 0 2378 82 0 10 chr6 17183424 17183728 -172095826 - AluSc SINE Alu -8 301 1 1646 248 100 75 chr6 17184346 17185208 -172094346 + L1MC4a LINE L1 5283 6165 -1643 335 277 87 33 chr6 17185437 17185621 -172093933 + MIR SINE MIR 8 201 -61 180 0 0 0 chr6 17186398 17186418 -172093136 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 182 182 0 0 chr6 17186553 17186586 -172092968 - L3 LINE CR1 -15 1562 1530 * 347 280 208 0 chr6 17186562 17186687 -172092867 - MIR3 SINE MIR -28 180 30 225 0 0 0 chr6 17186780 17186805 -172092749 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 588 296 140 40 chr6 17187429 17187851 -172091703 - MLT1J LTR MaLR -17 494 31 1138 207 83 109 chr6 17189023 17189599 -172089955 + MER34B LTR ERV1 5 565 0 183 308 189 0 chr6 17190605 17190748 -172088806 + MIR SINE MIR 77 246 -16 1704 152 0 79 chr6 17190751 17191079 -172088475 - AluJo SINE Alu -8 304 3 763 166 22 43 chr6 17191826 17191965 -172087589 + MSTB1 LTR MaLR 292 427 -5 967 177 0 0 chr6 17192072 17192230 -172087324 - FRAM SINE Alu -6 170 13 2089 102 6 57 chr6 17193251 17193565 -172085989 + AluSx SINE Alu 1 298 -14 192 292 188 0 chr6 17193570 17193666 -172085888 - L2 LINE L2 0 3313 3200 335 277 124 37 chr6 17195162 17195502 -172084052 + L2 LINE L2 2861 3290 -23 183 80 0 0 chr6 17195506 17195531 -172084023 + (TG)n Simple_repeat Simple_repeat 1 25 0 297 312 70 19 chr6 17196728 17196885 -172082669 - MIR3 SINE MIR -5 203 39 22 35 0 0 chr6 17197322 17197351 -172082203 + AT_rich Low_complexity Low_complexity 1 29 0 39 60 0 0 chr6 17197544 17197611 -172081943 + AT_rich Low_complexity Low_complexity 1 67 0 280 218 141 0 chr6 17197677 17197755 -172081799 + MIR3 SINE MIR 107 195 -13 2134 133 7 0 chr6 17197984 17198278 -172081276 - AluSx SINE Alu -12 300 5 2180 102 17 3 chr6 17198882 17199177 -172080377 + AluSp SINE Alu 1 299 -14 335 154 15 0 chr6 17199206 17199271 -172080283 + GA-rich Low_complexity Low_complexity 3 68 0 436 124 146 22 chr6 17199512 17199594 -172079960 + AluSp/q SINE Alu 211 306 -7 2717 139 59 2 chr6 17199594 17200084 -172079470 + L1MB2 LINE L1 5652 6169 -2 189 367 11 0 chr6 17201548 17201638 -172077916 - MIR SINE MIR -82 126 36 4996 143 53 5 chr6 17201692 17202478 -172077076 - LTR1B LTR ERV1 0 826 3 570 164 10 0 chr6 17202847 17202951 -172076603 + MER53 DNA DNA 1 105 -84 332 137 6 246 chr6 17204008 17204134 -172075420 - L2 LINE L2 0 3313 3239 2206 120 3 3 chr6 17204134 17204434 -172075120 + AluJb SINE Alu 1 300 -12 332 137 6 246 chr6 17204434 17204482 -172075072 - L2 LINE L2 -74 3239 3181 207 111 0 28 chr6 17204556 17204592 -172074962 + (TA)n Simple_repeat Simple_repeat 1 35 0 1902 152 6 19 chr6 17204592 17204907 -172074647 - AluSx SINE Alu -1 311 1 559 221 58 29 chr6 17204917 17205125 -172074429 - L2 LINE L2 -68 3245 3032 339 277 115 76 chr6 17205181 17205538 -172074016 + MLT1K LTR MaLR 204 574 -14 1341 202 0 0 chr6 17206443 17206666 -172072888 - MER58A DNA MER1_type 0 224 2 1451 156 140 89 chr6 17206946 17207382 -172072172 + MLT1C LTR MaLR 1 458 -9 2411 98 3 0 chr6 17207753 17208058 -172071496 - AluSp SINE Alu -7 306 1 331 253 53 32 chr6 17208167 17208262 -172071292 - L2 LINE L2 -2 3311 3215 43446 37 22 1 chr6 17208691 17214716 -172064838 - L1PA3 LINE L1 -4 6151 1 382 272 10 0 chr6 17215013 17215116 -172064438 + MIR SINE MIR 138 241 -21 203 267 50 3 chr6 17215991 17216094 -172063460 - MIR SINE MIR -66 142 35 256 197 167 0 chr6 17216173 17216239 -172063315 - MIR3 SINE MIR -118 90 14 1697 132 92 4 chr6 17217180 17217461 -172062093 + L1MC1 LINE L1 6018 6323 -10 691 157 0 67 chr6 17217461 17217595 -172061959 + AluJb SINE Alu 1 125 -187 2351 128 11 93 chr6 17217709 17218116 -172061438 - L1PB4 LINE L1 -5 6151 5783 231 88 0 0 chr6 17218116 17218150 -172061404 + (TA)n Simple_repeat Simple_repeat 2 35 0 2351 128 11 93 chr6 17218150 17218195 -172061359 - L1PB4 LINE L1 -373 5783 5736 1805 155 0 43 chr6 17219262 17219584 -172059970 - AluJb SINE Alu -4 308 1 304 183 17 5 chr6 17219776 17219893 -172059661 - MER5B DNA MER1_type 0 178 2 3360 193 42 3 chr6 17220189 17220851 -172058703 - L1MC3 LINE L1 -11 7774 7087 2161 180 51 18 chr6 17221128 17221579 -172057975 + MLT1C LTR MaLR 1 466 -1 2059 125 10 13 chr6 17221625 17221795 -172057759 - AluSx SINE Alu -9 303 133 189 74 0 0 chr6 17221795 17221822 -172057732 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2059 125 10 13 chr6 17221822 17221955 -172057599 - AluSx SINE Alu -179 133 1 885 300 36 33 chr6 17222273 17222580 -172056974 - LTR16A LTR ERVL -15 435 128 276 206 32 0 chr6 17222753 17222816 -172056738 - MLT1C LTR MaLR -399 68 4 615 226 0 0 chr6 17222982 17223088 -172056466 + LTR39 LTR ERV1 673 778 -5 4435 163 52 4 chr6 17223626 17224373 -172055181 + LTR39 LTR ERV1 1 783 0 335 237 59 74 chr6 17224825 17224960 -172054594 + MIR SINE MIR 57 189 -73 378 42 0 0 chr6 17225898 17225946 -172053608 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 91 0 0 chr6 17226009 17226042 -172053512 + (TC)n Simple_repeat Simple_repeat 2 34 0 1585 151 96 0 chr6 17226480 17226771 -172052783 - MER50 LTR ERV1 -415 319 1 1693 191 7 0 chr6 17227151 17227454 -172052100 + AluJo SINE Alu 1 305 -7 2142 111 3 0 chr6 17227662 17227950 -172051604 + AluSq SINE Alu 1 289 -24 199 289 19 0 chr6 17228101 17228153 -172051401 - MIR SINE MIR -70 138 86 2192 176 50 23 chr6 17228157 17228606 -172050948 + MLT1C LTR MaLR 7 549 0 2602 86 18 39 chr6 17228648 17228993 -172050561 - THE1C LTR MaLR 0 375 37 2175 133 0 0 chr6 17228993 17229294 -172050260 + AluSx SINE Alu 1 301 -11 2602 86 18 39 chr6 17229294 17229331 -172050223 - THE1C LTR MaLR -338 37 1 3922 125 35 65 chr6 17229418 17230130 -172049424 - LTR8 LTR ERV1 0 691 1 2835 123 23 44 chr6 17230283 17230935 -172048619 - LTR8A LTR ERV1 0 727 1 4865 87 11 53 chr6 17232020 17232205 -172047349 - LTR8 LTR ERV1 0 691 500 2186 105 3 0 chr6 17232205 17232500 -172047054 + AluSx SINE Alu 1 296 -16 4865 87 11 53 chr6 17232500 17233035 -172046519 - LTR8 LTR ERV1 -191 500 1 282 141 26 13 chr6 17234217 17234295 -172045259 + (TG)n Simple_repeat Simple_repeat 2 80 0 749 161 32 0 chr6 17234370 17234525 -172045029 + L1MA4A LINE L1 6132 6291 -12 257 372 37 12 chr6 17234897 17235061 -172044493 + MIR SINE MIR 29 196 -66 191 61 30 0 chr6 17235853 17235886 -172043668 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 530 246 59 69 chr6 17235971 17236174 -172043380 - L2 LINE L2 -2 3311 3111 255 278 259 4 chr6 17236304 17236574 -172042980 - L2 LINE L2 -48 3265 2927 265 323 83 0 chr6 17237321 17237417 -172042137 - MIR SINE MIR -67 141 38 784 149 104 26 chr6 17237525 17237679 -172041875 + MER5B DNA MER1_type 13 178 0 21 0 0 0 chr6 17237848 17237869 -172041685 + AT_rich Low_complexity Low_complexity 1 21 0 2367 103 0 0 chr6 17238212 17238513 -172041041 + AluSg SINE Alu 1 301 -9 1142 191 4 52 chr6 17240238 17240278 -172039276 - MER58A DNA MER1_type -2199 221 181 1815 116 3 78 chr6 17240278 17240597 -172038957 - AluY SINE Alu -16 295 1 1142 191 4 52 chr6 17240597 17240787 -172038767 - MER58A DNA MER1_type -2239 181 2 399 245 142 0 chr6 17240871 17240977 -172038577 + MIR SINE MIR 2 122 -140 180 152 0 0 chr6 17241020 17241053 -172038501 + MIR SINE MIR 129 161 -101 454 321 20 10 chr6 17241054 17241250 -172038304 - LTR16C LTR ERVL 0 491 294 199 329 0 37 chr6 17241401 17241483 -172038071 + MIR SINE MIR 161 239 -23 2120 123 10 0 chr6 17241910 17242203 -172037351 - AluSx SINE Alu -16 296 1 474 267 151 29 chr6 17242913 17243119 -172036435 - MLT1L LTR MaLR 0 615 385 1786 141 17 37 chr6 17243375 17243673 -172035881 + AluJo SINE Alu 1 292 -20 196 181 111 56 chr6 17243710 17243782 -172035772 - MIR SINE MIR -73 189 114 423 177 38 0 chr6 17244319 17244398 -172035156 - MER103 DNA DNA -48 118 37 2146 135 3 0 chr6 17244520 17244831 -172034723 + AluSx SINE Alu 1 312 0 776 218 18 0 chr6 17245012 17245182 -172034372 + MER5B DNA MER1_type 1 173 -5 279 238 152 19 chr6 17245809 17245914 -172033640 - MIR SINE MIR -26 236 118 227 324 0 0 chr6 17245909 17245980 -172033574 + MIR SINE MIR 176 246 -16 * 342 113 32 0 chr6 17245999 17246061 -172033493 - MIR3 SINE MIR -8 200 137 2294 85 3 3 chr6 17246078 17246373 -172033181 + AluSp SINE Alu 1 295 -18 1842 167 10 10 chr6 17246715 17247026 -172032528 + AluJb SINE Alu 1 311 -1 854 274 25 61 chr6 17247176 17247453 -172032101 + LTR16A LTR ERVL 18 284 -166 656 171 62 16 chr6 17248598 17248727 -172030827 - MER58B DNA MER1_type 0 341 207 3864 136 102 107 chr6 17249469 17250853 -172028701 - pTR5 LTR ERV1 -3 2435 729 321 290 77 24 chr6 17251097 17251345 -172028209 + L1MC/D LINE L1 5123 5383 -763 257 362 58 31 chr6 17252175 17252432 -172027122 + L1MC/D LINE L1 5526 5789 -2019 2109 140 0 9 chr6 17252432 17252747 -172026807 + AluSx SINE Alu 1 312 0 27 0 0 0 chr6 17252989 17253016 -172026538 + AT_rich Low_complexity Low_complexity 1 27 0 1889 206 73 108 chr6 17253535 17254007 -172025547 - L1ME3 LINE L1 -2 6160 5673 2064 194 43 62 chr6 17254007 17254537 -172025017 + MLT2B1 LTR ERVL 1 520 0 1889 206 73 108 chr6 17254537 17254567 -172024987 - L1ME3 LINE L1 -489 5673 5643 2022 159 0 0 chr6 17254567 17254863 -172024691 - AluSx SINE Alu -16 296 1 1889 206 73 108 chr6 17254863 17255247 -172024307 - L1ME3 LINE L1 -519 5643 5304 241 231 0 0 chr6 17255525 17255577 -172023977 + L2 LINE L2 3212 3263 -9 2330 118 118 20 chr6 17256300 17256690 -172022864 + MSTA LTR MaLR 1 428 0 586 273 34 0 chr6 17256715 17256891 -172022663 + MIR SINE MIR 7 188 -74 1721 131 103 22 chr6 17257703 17258015 -172021539 + MER1B DNA MER1_type 1 337 0 2270 112 0 0 chr6 17258147 17258441 -172021113 - AluSc SINE Alu -15 294 1 191 373 44 32 chr6 17258451 17258609 -172020945 - MIR SINE MIR -74 188 29 1984 128 3 7 chr6 17258737 17259043 -172020511 + AluSx SINE Alu 3 307 0 217 0 0 57 chr6 17259519 17259554 -172020000 + (CCA)n Simple_repeat Simple_repeat 3 35 0 370 346 34 58 chr6 17261073 17261368 -172018186 - L2 LINE L2 0 3272 2985 702 154 0 0 chr6 17261373 17261483 -172018071 + AluJb SINE Alu 2 111 -201 343 244 0 12 chr6 17261483 17261569 -172017985 + MER61E LTR ERV1 1 85 -484 242 254 0 17 chr6 17261652 17261711 -172017843 + LTR19B LTR ERV1 227 284 -296 * 2446 177 22 44 chr6 17261690 17262147 -172017407 + MER61E LTR ERV1 85 531 -38 1243 133 6 0 chr6 17262170 17262351 -172017203 + AluJb SINE Alu 107 288 -24 215 337 11 0 chr6 17262501 17262593 -172016961 - L2 LINE L2 -491 2823 2731 336 276 171 7 chr6 17263407 17263470 -172016084 + MER5B DNA MER1_type 2 53 -125 593 193 0 0 chr6 17263470 17263589 -172015965 + L1PA16 LINE L1 6043 6161 -5 2278 135 38 19 chr6 17263592 17263963 -172015591 + MER83B LTR ERV1 1 378 0 336 276 171 7 chr6 17263963 17264047 -172015507 + MER5B DNA MER1_type 54 178 0 304 276 144 83 chr6 17264783 17265096 -172014458 + MER77 LTR ERV1 156 529 -76 1874 163 0 0 chr6 17265600 17265888 -172013666 + AluJo SINE Alu 4 291 -21 598 154 22 39 chr6 17265897 17266079 -172013475 + GA-rich Low_complexity Low_complexity 1 179 0 491 308 66 0 chr6 17267545 17267772 -172011782 - MIR SINE MIR -3 259 18 3726 94 0 23 chr6 17267925 17268110 -172011444 + MER9 LTR ERVK 1 189 -322 2637 58 0 0 chr6 17268110 17268421 -172011133 - AluY SINE Alu 0 311 1 3726 94 0 23 chr6 17268421 17268758 -172010796 + MER9 LTR ERVK 189 511 0 188 214 0 0 chr6 17269876 17269918 -172009636 + L2 LINE L2 3272 3313 0 399 289 146 16 chr6 17270242 17270488 -172009066 - L3 LINE CR1 -721 856 579 839 261 73 46 chr6 17270525 17270799 -172008755 - MLT1J LTR MaLR -1 510 226 4900 119 11 7 chr6 17270799 17271523 -172008031 - LTR8A LTR ERV1 0 727 1 839 261 73 46 chr6 17271523 17271551 -172008003 - MLT1J LTR MaLR -285 226 200 2142 98 0 0 chr6 17271565 17271830 -172007724 - AluSg SINE Alu -45 265 1 4344 184 40 15 chr6 17272110 17272986 -172006568 + MER4D LTR ERV1 1 898 -5 232 312 97 0 chr6 17273151 17273244 -172006310 - MLT2F LTR ERVL 0 663 562 644 248 145 14 chr6 17273364 17273646 -172005908 - MLT2F LTR ERVL -319 344 26 3335 119 0 45 chr6 17274220 17274468 -172005086 + MER41B LTR ERV1 122 335 -300 737 189 0 8 chr6 17274468 17274600 -172004954 + FLAM_C SINE Alu 2 132 -1 3335 119 0 45 chr6 17274600 17274887 -172004667 + MER41B LTR ERV1 335 633 -2 477 279 34 0 chr6 17275330 17275477 -172004077 + MIR SINE MIR 110 261 -1 1874 160 7 0 chr6 17275606 17275893 -172003661 + AluJb SINE Alu 1 289 -23 1957 163 0 0 chr6 17275894 17276209 -172003345 + AluSx SINE Alu 1 315 0 1788 102 0 12 chr6 17276992 17277238 -172002316 - AluSg SINE Alu -8 302 60 1820 175 5 67 chr6 17277323 17277695 -172001859 - MER50 LTR ERV1 -23 711 363 4575 117 15 24 chr6 17277888 17278605 -172000949 + MER50 LTR ERV1 1 711 -23 1732 206 161 33 chr6 17279050 17279510 -172000044 - LTR40a LTR ERVL 0 519 1 378 290 146 38 chr6 17279625 17279783 -171999771 + MIR SINE MIR 16 188 -62 288 146 0 15 chr6 17279865 17280111 -171999443 + AluJb SINE Alu 1 300 0 938 185 28 0 chr6 17280923 17281101 -171998453 - MER5A DNA MER1_type -3 186 4 768 218 23 11 chr6 17281112 17281286 -171998268 - MER5B DNA MER1_type 0 178 3 536 224 10 83 chr6 17281842 17281911 -171997643 + MER5B DNA MER1_type 1 73 -105 548 213 19 0 chr6 17281911 17282019 -171997535 - MER81 DNA DNA -1 113 4 536 224 10 83 chr6 17282019 17282141 -171997413 + MER5B DNA MER1_type 73 178 0 1792 156 184 11 chr6 17283251 17283616 -171995938 - MSTA LTR MaLR 0 428 1 1054 240 12 4 chr6 17283823 17284077 -171995477 + MIR SINE MIR 6 261 -1 2277 147 34 54 chr6 17284241 17284682 -171994872 - MSTB1 LTR MaLR 0 432 1 227 208 0 0 chr6 17284771 17284824 -171994730 + MIR SINE MIR 197 249 -13 21 0 0 0 chr6 17284852 17284873 -171994681 + AT_rich Low_complexity Low_complexity 1 21 0 220 308 48 0 chr6 17286036 17286140 -171993414 - MIR SINE MIR -15 247 139 2163 138 0 6 chr6 17286346 17286657 -171992897 + AluSx SINE Alu 4 312 0 833 219 15 5 chr6 17286944 17287140 -171992414 + LTR16B LTR ERVL 261 458 -6 452 269 48 36 chr6 17287384 17287581 -171991973 - MER20B DNA MER1_type -17 202 1 365 317 89 86 chr6 17287600 17288187 -171991367 + L2 LINE L2 1071 1655 -1659 1686 176 3 30 chr6 17288187 17288489 -171991065 + AluJb SINE Alu 3 296 -16 365 317 89 86 chr6 17288489 17289167 -171990387 + L2 LINE L2 1655 2340 -974 231 322 40 53 chr6 17289483 17289635 -171989919 - LTR67 LTR ERVL -309 248 99 459 324 7 0 chr6 17289909 17290057 -171989497 + L2 LINE L2 2584 2732 -582 219 286 12 12 chr6 17290087 17290171 -171989383 + L2 LINE L2 3156 3239 -33 254 93 0 23 chr6 17290380 17290423 -171989131 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1645 169 34 0 chr6 17290424 17290690 -171988864 - AluJb SINE Alu -37 275 1 1555 142 130 128 chr6 17292030 17292367 -171987187 + MSTB LTR MaLR 3 338 -88 4760 58 5 5 chr6 17292367 17292965 -171986589 - L1PA8 LINE L1 -5 6167 5570 1555 142 130 128 chr6 17292965 17293008 -171986546 + MSTB LTR MaLR 338 379 -47 2074 128 7 3 chr6 17293008 17293305 -171986249 - AluSx SINE Alu -14 298 1 1555 142 130 128 chr6 17293305 17293346 -171986208 + MSTB LTR MaLR 379 426 0 426 228 193 1 chr6 17293495 17293733 -171985821 + L2 LINE L2 2779 3059 -254 2343 160 80 34 chr6 17293734 17294209 -171985345 + MLT1D LTR MaLR 3 499 -6 622 219 52 89 chr6 17294210 17294307 -171985247 + L2 LINE L2 3054 3153 -160 2587 67 0 0 chr6 17294307 17294606 -171984948 - AluSc SINE Alu -10 299 1 622 219 52 89 chr6 17294606 17294778 -171984776 + L2 LINE L2 3153 3313 0 666 280 8 42 chr6 17295179 17295418 -171984136 - MIR SINE MIR 0 262 32 1685 129 101 21 chr6 17295460 17295746 -171983808 - THE1B LTR MaLR -55 309 1 2197 66 216 3 chr6 17295753 17296073 -171983481 - THE1B-int LTR MaLR -21 1559 1172 1867 174 30 22 chr6 17296253 17296615 -171982939 - MLT1A1 LTR MaLR 0 365 1 682 244 160 91 chr6 17296924 17297232 -171982322 - MLT1D LTR MaLR 0 467 115 1812 197 21 13 chr6 17297232 17297617 -171981937 + MLT1B LTR MaLR 1 388 -2 682 244 160 91 chr6 17297617 17297737 -171981817 - MLT1D LTR MaLR -352 115 5 6365 103 9 24 chr6 17298930 17299861 -171979693 + MER11C LTR ERVK 141 1057 -14 1206 209 15 67 chr6 17299878 17299932 -171979622 + MLT1G LTR MaLR 278 333 -257 2337 179 38 20 chr6 17299932 17300384 -171979170 + MLT1C LTR MaLR 4 463 -4 1206 209 15 67 chr6 17300384 17300659 -171978895 + MLT1G LTR MaLR 333 590 0 358 288 119 29 chr6 17300813 17301091 -171978463 - L1ME4a LINE L1 -73 6048 5746 1282 225 62 3 chr6 17301151 17301471 -171978083 + MER58B DNA MER1_type 2 340 -1 752 161 12 50 chr6 17301482 17301643 -171977911 + MLT2C1 LTR ERVL 243 397 0 1837 184 25 22 chr6 17302314 17302679 -171976875 - MLT1B LTR MaLR -4 386 21 1745 232 90 114 chr6 17303671 17304234 -171975320 + L2 LINE L2 1993 2568 -745 699 199 8 15 chr6 17304234 17304365 -171975189 - FAM SINE Alu -15 170 41 1745 232 90 114 chr6 17304365 17304983 -171974571 + L2 LINE L2 2568 3265 -48 450 223 41 16 chr6 17305031 17305152 -171974402 - MIR3 SINE MIR -54 154 31 3594 115 4 2 chr6 17305362 17305868 -171973686 - L1PA15 LINE L1 -6 6159 5653 4242 120 10 8 chr6 17306210 17306834 -171972720 + MER41B LTR ERV1 3 627 -8 781 211 99 30 chr6 17306842 17307074 -171972480 + MIR SINE MIR 5 252 -10 1903 175 195 24 chr6 17307076 17307584 -171971970 - LTR49 LTR ERV1 0 595 1 2378 93 3 0 chr6 17307638 17307938 -171971616 - AluSp SINE Alu -12 301 1 180 0 0 0 chr6 17308037 17308057 -171971497 + (TGG)n Simple_repeat Simple_repeat 1 20 0 691 305 35 0 chr6 17308057 17308257 -171971297 + MER102b DNA MER1_type 84 290 -51 230 330 68 15 chr6 17308452 17308716 -171970838 - L1M4 LINE L1 -1088 5058 4781 204 162 27 0 chr6 17310123 17310160 -171969394 + CT-rich Low_complexity Low_complexity 4 41 0 1827 209 32 38 chr6 17310410 17310435 -171969119 + MLT1C LTR MaLR 1 25 -442 2243 179 47 2 chr6 17310435 17310843 -171968711 - MSTB LTR MaLR 0 426 1 1827 209 32 38 chr6 17310843 17311004 -171968550 + MLT1C LTR MaLR 25 186 -281 2258 123 0 0 chr6 17311004 17311312 -171968242 + AluSx SINE Alu 1 308 -4 1827 209 32 38 chr6 17311312 17311594 -171967960 + MLT1C LTR MaLR 186 467 0 208 150 0 25 chr6 17312585 17312625 -171966929 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 228 358 43 12 chr6 17312805 17312967 -171966587 - L2 LINE L2 -4 3268 3102 234 345 81 39 chr6 17313297 17313555 -171965999 - L2 LINE L2 -410 2904 2636 463 314 124 19 chr6 17313556 17313814 -171965740 + L1MC/D LINE L1 5432 5716 -2092 1824 102 121 11 chr6 17313871 17314136 -171965418 + AluSx SINE Alu 1 294 -18 1895 151 9 38 chr6 17314350 17314669 -171964885 - AluSx SINE Alu -2 310 1 1874 164 0 10 chr6 17314723 17315022 -171964532 - AluJo SINE Alu -14 298 3 183 71 71 0 chr6 17315033 17315075 -171964479 + (TA)n Simple_repeat Simple_repeat 2 46 0 250 182 0 0 chr6 17315078 17315133 -171964421 - L1MC4 LINE L1 -1340 6702 6648 2389 80 3 0 chr6 17315152 17315441 -171964113 - AluSp SINE Alu -23 290 1 2038 148 0 0 chr6 17316779 17317069 -171962485 + AluJb SINE Alu 1 290 -22 1414 188 44 76 chr6 17317413 17317730 -171961824 - MLT1C LTR MaLR -5 452 164 4010 120 16 2 chr6 17317730 17318339 -171961215 + L1PA13 LINE L1 5546 6163 0 1414 188 44 76 chr6 17318339 17318463 -171961091 - MLT1C LTR MaLR -293 164 38 225 0 0 0 chr6 17319019 17319044 -171960510 + (CA)n Simple_repeat Simple_repeat 2 26 0 1975 157 3 0 chr6 17320321 17320626 -171958928 + AluJb SINE Alu 1 306 -6 600 162 19 0 chr6 17321003 17321108 -171958446 - LTR47A LTR ERVL -343 109 3 629 233 53 72 chr6 17321822 17322179 -171957375 - MLT1H LTR MaLR -16 533 109 2150 95 3 0 chr6 17322583 17322866 -171956688 + THE1B-int LTR MaLR 1297 1580 0 2148 144 36 30 chr6 17322866 17323228 -171956326 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr6 17323384 17323406 -171956148 + AT_rich Low_complexity Low_complexity 1 22 0 1861 143 60 33 chr6 17323435 17323800 -171955754 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr6 17324599 17324623 -171954931 + (CA)n Simple_repeat Simple_repeat 1 24 0 202 277 40 50 chr6 17324853 17324954 -171954600 - MER5A DNA MER1_type -9 180 81 281 236 112 11 chr6 17324992 17325081 -171954473 + L2 LINE L2 2219 2316 -998 1526 127 9 18 chr6 17326209 17326438 -171953116 - AluSg/x SINE Alu 0 312 86 1676 174 34 7 chr6 17326786 17327084 -171952470 - AluJo SINE Alu -6 306 1 255 65 0 81 chr6 17328498 17328560 -171950994 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 294 306 28 0 chr6 17328664 17328772 -171950782 + MIR SINE MIR 30 140 -68 1622 165 0 84 chr6 17329252 17329398 -171950156 + AluJb SINE Alu 1 105 -207 2527 83 0 0 chr6 17329398 17329700 -171949854 + AluY SINE Alu 1 302 -9 1622 165 0 84 chr6 17329700 17329886 -171949668 + AluJb SINE Alu 105 305 -7 508 290 7 14 chr6 17330675 17330820 -171948734 - MER5B DNA MER1_type -12 166 23 366 322 84 7 chr6 17330876 17331019 -171948535 + MER5B DNA MER1_type 25 178 0 2193 110 0 0 chr6 17331769 17332068 -171947486 - AluSx SINE Alu 0 312 14 191 204 20 0 chr6 17332127 17332176 -171947378 + (CA)n Simple_repeat Simple_repeat 1 50 0 705 229 88 0 chr6 17333160 17333330 -171946224 + MIR SINE MIR 29 213 -49 332 349 48 66 chr6 17333398 17333492 -171946062 + L2 LINE L2 2456 2550 -764 2384 79 7 0 chr6 17333492 17333796 -171945758 - AluSp SINE Alu -7 306 1 332 349 48 66 chr6 17333796 17334097 -171945457 + L2 LINE L2 2550 2844 -470 212 256 0 0 chr6 17334181 17334224 -171945330 + polypyrimidine Low_complexity Low_complexity 5 47 0 356 289 40 40 chr6 17336591 17336816 -171942738 - MLT1J LTR MaLR 0 511 287 2212 85 97 22 chr6 17336821 17337140 -171942414 + MER61A LTR ERV1 1 343 0 2170 65 0 4 chr6 17337829 17338091 -171941463 - AluSc SINE Alu -14 295 35 570 238 139 0 chr6 17338422 17338573 -171940981 + MER45A DNA AcHobo 1 172 -6 593 346 11 23 chr6 17338584 17338847 -171940707 + MIR SINE MIR 2 261 -1 649 262 123 71 chr6 17338871 17339211 -171940343 - L2 LINE L2 -4 3309 2952 2232 107 0 0 chr6 17339452 17339743 -171939811 - AluSg SINE Alu -9 301 11 573 139 12 12 chr6 17340215 17340381 -171939173 + GA-rich Low_complexity Low_complexity 1 166 0 3355 173 65 37 chr6 17341776 17341951 -171937603 + L1MB3 LINE L1 5338 5507 -676 2523 75 0 0 chr6 17341951 17342258 -171937296 - AluY SINE Alu -4 307 1 3355 173 65 37 chr6 17342258 17342797 -171936757 + L1MB3 LINE L1 5507 6088 -95 2237 89 20 3 chr6 17342797 17343090 -171936464 - AluSx SINE Alu -14 298 1 3355 173 65 37 chr6 17343090 17343175 -171936379 + L1MB3 LINE L1 6088 6169 -14 393 22 0 0 chr6 17343175 17343221 -171936333 + (CA)n Simple_repeat Simple_repeat 1 46 0 1687 183 3 3 chr6 17343791 17344117 -171935437 - AluJb SINE Alu 0 326 1 3973 133 139 88 chr6 17345000 17346349 -171933205 - pTR5 LTR ERV1 -143 2295 743 924 289 89 58 chr6 17346368 17347045 -171932509 + L1MEd LINE L1 2 712 -5407 207 69 0 0 chr6 17347045 17347074 -171932480 + (CA)n Simple_repeat Simple_repeat 1 29 0 924 289 89 58 chr6 17347074 17347253 -171932301 + L1MEd LINE L1 712 884 -5235 44 0 0 0 chr6 17347335 17347379 -171932175 + AT_rich Low_complexity Low_complexity 1 44 0 364 256 88 82 chr6 17347379 17347574 -171931980 + L1MEd LINE L1 814 1006 -5137 2215 96 3 35 chr6 17347574 17347888 -171931666 + AluSx SINE Alu 7 310 -2 364 256 88 82 chr6 17347888 17348133 -171931421 + L1MEd LINE L1 1006 1281 -4862 224 217 67 0 chr6 17348176 17348236 -171931318 - MIR SINE MIR -1 261 198 227 81 0 54 chr6 17348496 17348533 -171931021 - MER57B LTR ERV1 -319 115 81 201 366 0 12 chr6 17348533 17348615 -171930939 - MER5B DNA MER1_type -30 148 68 459 184 61 0 chr6 17348769 17348867 -171930687 - MER5A DNA MER1_type -83 106 3 251 150 0 0 chr6 17348909 17348949 -171930605 - MER5B DNA MER1_type -2 176 137 1301 165 70 70 chr6 17348959 17349160 -171930394 - MLT1A1 LTR MaLR -13 352 149 2104 117 3 31 chr6 17349160 17349477 -171930077 - AluSx SINE Alu -4 308 1 1301 165 70 70 chr6 17349477 17349603 -171929951 - MLT1A1 LTR MaLR -215 150 25 232 330 19 29 chr6 17349610 17349632 -171929922 - MER5B DNA MER1_type -37 141 120 1232 184 42 42 chr6 17349632 17349871 -171929683 + MER8 DNA MER2_type 1 239 0 232 330 19 29 chr6 17349871 17349951 -171929603 - MER5B DNA MER1_type -58 120 40 21 57 0 0 chr6 17351254 17351289 -171928265 + AT_rich Low_complexity Low_complexity 1 35 0 444 37 0 0 chr6 17351385 17351439 -171928115 + (TG)n Simple_repeat Simple_repeat 2 55 0 439 186 0 0 chr6 17352443 17352513 -171927041 - MER8 DNA MER2_type 0 239 170 * 2665 136 36 23 chr6 17352502 17352942 -171926612 + Tigger2 DNA MER2_type 2273 2718 0 280 344 75 0 chr6 17353035 17353128 -171926426 + L2 LINE L2 3173 3272 0 2297 94 0 16 chr6 17353775 17354082 -171925472 + AluSq SINE Alu 1 302 -11 198 194 0 0 chr6 17354777 17354808 -171924746 - MIR SINE MIR -63 145 115 508 178 19 19 chr6 17354960 17355067 -171924487 + MER5A DNA MER1_type 7 113 -76 3892 136 5 8 chr6 17355639 17356241 -171923313 + L1PA16 LINE L1 5545 6144 -22 261 263 103 32 chr6 17357529 17357685 -171921869 + MIR SINE MIR 96 262 0 2079 170 80 3 chr6 17358023 17358388 -171921166 + MER47B DNA MER2_type 26 418 0 1538 219 19 27 chr6 17359352 17359718 -171919836 - MLT1A2 LTR MaLR -6 368 6 315 0 0 0 chr6 17360553 17360588 -171918966 + (CA)n Simple_repeat Simple_repeat 2 36 0 2113 202 33 54 chr6 17360612 17361128 -171918426 - MLT1D LTR MaLR 0 505 1 202 305 0 0 chr6 17361866 17361925 -171917629 - L2 LINE L2 -8 3264 3206 1874 120 8 2 chr6 17362175 17362452 -171917102 + THE1B LTR MaLR 1 293 -62 1689 185 6 22 chr6 17363247 17363561 -171915993 + AluJo SINE Alu 1 309 -3 184 320 10 30 chr6 17363811 17363911 -171915643 + MIR SINE MIR 61 158 -104 281 358 37 22 chr6 17364163 17364297 -171915257 + L2 LINE L2 3132 3267 -5 675 239 40 105 chr6 17364829 17365105 -171914449 - MIR SINE MIR -4 258 1 2199 140 83 34 chr6 17365472 17365541 -171914013 - MSTA LTR MaLR 0 428 364 2088 90 76 0 chr6 17365541 17365818 -171913736 + AluSp SINE Alu 1 298 -15 2199 140 83 34 chr6 17365818 17366156 -171913398 - MSTA LTR MaLR -64 364 1 387 0 0 0 chr6 17366798 17366841 -171912713 + (TG)n Simple_repeat Simple_repeat 2 44 0 814 144 0 0 chr6 17368237 17368348 -171911206 + FLAM_C SINE Alu 1 111 -32 207 0 0 0 chr6 17368360 17368383 -171911171 + (TTG)n Simple_repeat Simple_repeat 2 24 0 279 296 83 46 chr6 17368654 17368762 -171910792 + L2 LINE L2 3161 3272 0 369 241 65 9 chr6 17369139 17369247 -171910307 + MIR SINE MIR 65 178 -84 2447 90 0 0 chr6 17369916 17370217 -171909337 + AluSx SINE Alu 1 301 -11 2217 101 7 33 chr6 17370285 17370592 -171908962 - AluSq SINE Alu -14 299 1 1848 151 20 7 chr6 17370913 17371217 -171908337 + MER46B DNA MER2_type 2 184 -52 21 0 0 0 chr6 17372310 17372331 -171907223 + AT_rich Low_complexity Low_complexity 1 21 0 2186 119 3 0 chr6 17372496 17372790 -171906764 + AluSx SINE Alu 6 300 -12 202 204 0 0 chr6 17373352 17373396 -171906158 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 445 338 122 31 chr6 17373527 17374047 -171905507 - L2 LINE L2 -180 3092 2513 588 240 0 8 chr6 17374324 17374445 -171905109 - MER5C DNA MER1_type -200 124 5 1205 217 103 37 chr6 17374478 17374828 -171904726 - MLT1J2 LTR MaLR -40 410 38 1822 161 0 16 chr6 17375828 17376324 -171903230 + AluJb SINE Alu 1 312 0 1172 106 6 0 chr6 17376339 17376518 -171903036 + (GAA)n Simple_repeat Simple_repeat 1 180 0 355 238 195 43 chr6 17376543 17376728 -171902826 + MIR SINE MIR 50 262 0 1864 201 44 29 chr6 17376901 17377237 -171902317 - MLT1C LTR MaLR -8 459 113 2874 109 0 3 chr6 17377237 17377613 -171901941 + THE1C LTR MaLR 1 375 0 1864 201 44 29 chr6 17377613 17377728 -171901826 - MLT1C LTR MaLR -354 113 1 2178 98 0 0 chr6 17379716 17380012 -171899542 + AluSx SINE Alu 7 302 0 1506 114 50 5 chr6 17381993 17382213 -171897341 - MER30 DNA MER1_type 0 230 1 357 99 37 0 chr6 17382222 17382303 -171897251 + (TA)n Simple_repeat Simple_repeat 1 84 0 298 301 83 26 chr6 17382372 17382528 -171897026 + MIR3 SINE MIR 33 197 -11 2250 97 3 31 chr6 17383209 17383530 -171896024 - AluSp SINE Alu -1 312 1 273 57 0 0 chr6 17383742 17383777 -171895777 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 230 243 57 14 chr6 17384031 17384101 -171895453 - L2 LINE L2 -13 3300 3228 22 35 0 0 chr6 17385391 17385420 -171894134 + AT_rich Low_complexity Low_complexity 1 29 0 3445 167 22 2 chr6 17385745 17386296 -171893258 + MER68 LTR ERV1 1 562 0 1206 252 151 43 chr6 17386299 17387128 -171892426 - L2 LINE L2 -18 3295 2341 1764 157 3 26 chr6 17387128 17387433 -171892121 - AluJo SINE Alu -13 299 2 1206 252 151 43 chr6 17387433 17387444 -171892110 - L2 LINE L2 -972 2341 2333 566 278 102 5 chr6 17387447 17387634 -171891920 - MIR SINE MIR -56 206 2 2233 91 0 3 chr6 17387761 17388083 -171891471 - AluSp SINE Alu 0 321 1 234 62 0 0 chr6 17388117 17388149 -171891405 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 1773 263 24 0 chr6 17388204 17388622 -171890932 + LTR16A LTR ERVL 21 448 -2 237 33 0 0 chr6 17388638 17388668 -171890886 + (CA)n Simple_repeat Simple_repeat 1 30 0 607 158 21 0 chr6 17388668 17388763 -171890791 + L1MC4 LINE L1 6705 6801 -1241 816 214 0 12 chr6 17388763 17388931 -171890623 + AluJb SINE Alu 132 297 -15 6016 157 37 63 chr6 17388936 17390228 -171889326 + L1MC4 LINE L1 6793 7994 -1 2689 127 46 7 chr6 17390244 17390678 -171888876 - L1MB2 LINE L1 -2 6169 5719 2354 183 72 17 chr6 17391333 17391862 -171887692 + L1MD3 LINE L1 7435 7992 -3 180 149 64 85 chr6 17391927 17391974 -171887580 - L2 LINE L2 0 3272 3227 2296 116 0 0 chr6 17392513 17392814 -171886740 + AluSx SINE Alu 1 301 -11 2056 92 0 11 chr6 17393541 17393813 -171885741 - AluSx SINE Alu -43 269 1 324 256 244 12 chr6 17393873 17394041 -171885513 - MIR SINE MIR 0 262 56 22 56 0 0 chr6 17394142 17394178 -171885376 + AT_rich Low_complexity Low_complexity 1 36 0 823 249 37 12 chr6 17394426 17394667 -171884887 + L1M4 LINE L1 3535 3781 -2365 3312 119 4 13 chr6 17394867 17395339 -171884215 - MER1A DNA MER1_type 0 529 62 186 278 189 0 chr6 17395552 17395642 -171883912 - MIR SINE MIR -111 151 45 2480 55 0 7 chr6 17396141 17396450 -171883104 + AluY SINE Alu 1 307 -4 2335 103 0 3 chr6 17396833 17397134 -171882420 - AluSg SINE Alu -10 300 1 226 260 83 21 chr6 17397172 17397268 -171882286 - L1ME4a LINE L1 -97 6024 5923 291 211 100 11 chr6 17400589 17400679 -171878875 + L1ME4a LINE L1 6018 6115 -6 209 152 43 0 chr6 17401759 17401805 -171877749 + GA-rich Low_complexity Low_complexity 2 49 0 189 0 0 0 chr6 17401849 17401870 -171877684 + (T)n Simple_repeat Simple_repeat 1 21 0 1834 146 3 26 chr6 17402072 17402380 -171877174 + AluJo SINE Alu 4 304 -8 2093 110 3 3 chr6 17402434 17402740 -171876814 + AluSp SINE Alu 1 306 0 1696 188 0 7 chr6 17402759 17403067 -171876487 - AluJb SINE Alu -6 306 1 184 310 0 0 chr6 17403950 17404008 -171875546 - MIR SINE MIR -108 154 97 1957 124 3 22 chr6 17404031 17404346 -171875208 - AluJo SINE Alu -3 309 1 2318 75 6 40 chr6 17404873 17405236 -171874318 - AluSq SINE Alu 0 354 3 186 43 0 0 chr6 17407628 17407651 -171871903 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr6 17408580 17408601 -171870953 + AT_rich Low_complexity Low_complexity 1 21 0 216 203 51 68 chr6 17409718 17409777 -171869777 + MIR SINE MIR 22 79 -129 294 269 107 34 chr6 17410687 17410836 -171868718 + L2 LINE L2 3118 3277 -36 228 130 0 0 chr6 17412335 17412381 -171867173 + LTR66 LTR ERVL 394 439 -171 235 124 29 76 chr6 17412383 17412488 -171867066 + (TA)n Simple_repeat Simple_repeat 1 100 0 2765 219 92 34 chr6 17412685 17413788 -171865766 - L1ME2 LINE L1 -31 6133 4978 1894 80 53 0 chr6 17415739 17416001 -171863553 + AluY SINE Alu 21 296 -15 208 362 73 24 chr6 17417199 17417445 -171862109 - L2 LINE L2 -337 2977 2720 235 324 34 34 chr6 17417657 17417833 -171861721 - L2 LINE L2 -925 2389 2214 850 217 69 23 chr6 17419026 17419243 -171860311 - MLT1E LTR MaLR -4 589 363 301 230 120 40 chr6 17420720 17420820 -171858734 - MIR SINE MIR -36 226 119 258 259 0 62 chr6 17422171 17422252 -171857302 - MIR SINE MIR -117 91 16 24 0 0 0 chr6 17424946 17424970 -171854584 + AT_rich Low_complexity Low_complexity 1 24 0 576 81 0 0 chr6 17424970 17425044 -171854510 - U3 snRNA snRNA -143 74 1 21 0 0 0 chr6 17425517 17425538 -171854016 + AT_rich Low_complexity Low_complexity 1 21 0 212 233 192 0 chr6 17425610 17425683 -171853871 - L2 LINE L2 0 3313 3227 464 158 13 26 chr6 17427154 17427230 -171852324 + FLAM_A SINE Alu 9 83 -59 2309 87 0 26 chr6 17427674 17427985 -171851569 + AluY SINE Alu 9 311 0 310 349 92 64 chr6 17428896 17428962 -171850592 - L2 LINE L2 0 3272 3209 974 181 31 62 chr6 17428962 17429188 -171850366 + MER20 DNA MER1_type 1 219 0 310 349 92 64 chr6 17429188 17429557 -171849997 - L2 LINE L2 -63 3209 2825 482 193 156 46 chr6 17430748 17430857 -171848697 - FLAM_A SINE Alu -12 130 10 667 254 12 0 chr6 17430961 17431130 -171848424 - MIR SINE MIR -45 217 47 1146 229 185 92 chr6 17432232 17432950 -171846604 - LTR1B LTR ERV1 -37 983 1 628 218 79 12 chr6 17433982 17434147 -171845407 + L2 LINE L2 3119 3294 -19 480 272 9 80 chr6 17435179 17435289 -171844265 + MIR SINE MIR 56 146 -116 1561 28 0 6 chr6 17435289 17435496 -171844058 + AluY SINE Alu 104 309 0 480 272 9 80 chr6 17435496 17435597 -171843957 + MIR SINE MIR 146 253 -9 540 251 0 116 chr6 17435706 17435913 -171843641 + MER91B DNA MER1_type 8 190 0 380 238 9 38 chr6 17436763 17436868 -171842686 + L1ME1 LINE L1 6048 6149 -17 864 188 64 43 chr6 17436880 17437114 -171842440 + MLT1L LTR MaLR 1 239 -376 2143 108 17 0 chr6 17437118 17437405 -171842149 + AluSq SINE Alu 1 292 -21 926 136 0 0 chr6 17439268 17439400 -171840154 + FLAM_C SINE Alu 2 133 0 782 245 71 74 chr6 17439531 17439854 -171839700 + MLT1L LTR MaLR 294 615 0 921 157 82 0 chr6 17441043 17441202 -171838352 - FRAM SINE Alu -7 169 1 222 37 0 0 chr6 17441508 17441535 -171838019 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 476 185 11 0 chr6 17441551 17441643 -171837911 - L2 LINE L2 -41 3272 3180 1392 146 0 61 chr6 17441929 17442176 -171837378 - MER21B LTR ERV1 0 863 632 232 254 0 0 chr6 17442179 17442238 -171837316 - MLT1E3 LTR MaLR -453 171 113 4733 150 37 37 chr6 17442265 17443127 -171836427 - MER21B LTR ERV1 -1 862 1 186 43 0 0 chr6 17444364 17444387 -171835167 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2002 141 29 29 chr6 17445488 17445863 -171833691 + THE1C LTR MaLR 1 375 0 210 71 0 0 chr6 17445880 17445908 -171833646 + (T)n Simple_repeat Simple_repeat 1 28 0 1078 210 76 45 chr6 17446159 17446540 -171833014 - L1MC5 LINE L1 -26 7935 7543 1572 114 18 9 chr6 17446540 17446767 -171832787 - MER30 DNA MER1_type 0 230 2 571 286 11 11 chr6 17446791 17446976 -171832578 - L1M4 LINE L1 -1939 4207 4023 203 288 26 20 chr6 17446988 17447141 -171832413 + (TA)n Simple_repeat Simple_repeat 1 154 0 247 267 43 17 chr6 17447175 17447291 -171832263 - L1M4 LINE L1 -2208 3938 3820 1992 175 48 11 chr6 17447718 17448093 -171831461 + L1MC3 LINE L1 6119 7703 -82 541 183 29 0 chr6 17448759 17448863 -171830691 + L1MC3 LINE L1 7678 7784 -1 2155 126 3 0 chr6 17449019 17449313 -171830241 + AluSx SINE Alu 1 295 -17 976 195 45 112 chr6 17450431 17450877 -171828677 - L1MC5 LINE L1 -35 7926 7511 1557 149 15 98 chr6 17451763 17452098 -171827456 - AluSq SINE Alu -6 307 1 285 285 67 36 chr6 17452607 17452744 -171826810 + MIR SINE MIR 31 175 -87 2256 116 108 8 chr6 17452744 17453133 -171826421 + MSTA LTR MaLR 1 428 0 285 285 67 36 chr6 17453133 17453160 -171826394 + MIR SINE MIR 175 200 -62 4460 62 3 10 chr6 17453187 17453765 -171825789 + L1PA8 LINE L1 5599 6172 0 1658 119 51 10 chr6 17454130 17454423 -171825131 - L1MA7 LINE L1 0 6291 5987 380 203 85 25 chr6 17455020 17455138 -171824416 - MIR SINE MIR -118 144 20 277 180 0 0 chr6 17455589 17455639 -171823915 + L2 LINE L2 3258 3307 -6 1541 140 48 62 chr6 17455740 17455983 -171823571 - MER7A DNA MER2_type -2692 346 108 1618 184 7 7 chr6 17455983 17456271 -171823283 + AluJb SINE Alu 1 288 -24 1541 140 48 62 chr6 17456271 17456319 -171823235 - MER7A DNA MER2_type -2930 108 61 235 221 183 77 chr6 17456402 17456506 -171823048 + LTR31 LTR ERV1 109 223 -396 341 234 0 0 chr6 17456535 17456599 -171822955 + MER72 LTR ERV1 377 440 -282 3462 134 51 84 chr6 17456614 17457878 -171821676 - pTR5 LTR ERV1 -143 2295 741 413 269 155 5 chr6 17457878 17458071 -171821483 + LTR31 LTR ERV1 337 558 -61 1747 158 15 130 chr6 17458081 17458542 -171821012 - LTR12 LTR ERV1 -254 460 53 242 269 0 0 chr6 17458542 17458594 -171820960 - LTR30 LTR ERV1 -670 52 1 229 344 0 0 chr6 17458647 17458711 -171820843 - MER7A DNA MER2_type -284 64 1 252 0 0 0 chr6 17459120 17459148 -171820406 + (A)n Simple_repeat Simple_repeat 1 28 0 2111 102 0 10 chr6 17459330 17459624 -171819930 - AluSx SINE Alu -1 311 21 2113 98 7 0 chr6 17463077 17463363 -171816191 + AluSc SINE Alu 1 288 -21 237 108 0 0 chr6 17463415 17463452 -171816102 + (AATTG)n Simple_repeat Simple_repeat 4 40 0 245 227 15 15 chr6 17465283 17465349 -171814205 + (CATA)n Simple_repeat Simple_repeat 2 67 0 407 155 0 77 chr6 17465349 17465543 -171814011 + (TA)n Simple_repeat Simple_repeat 1 179 0 213 154 31 46 chr6 17465549 17465614 -171813940 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 1614 167 10 48 chr6 17466003 17466315 -171813239 + AluJb SINE Alu 1 300 -12 268 275 19 113 chr6 17467557 17467717 -171811837 - MIR SINE MIR -10 252 108 234 0 0 0 chr6 17468019 17468045 -171811509 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1677 31 0 0 chr6 17468045 17468239 -171811315 - L1PA4 LINE L1 -10 6145 5952 180 333 26 13 chr6 17468411 17468489 -171811065 + MER5A DNA MER1_type 63 141 -48 2015 154 0 10 chr6 17468650 17468961 -171810593 - AluSx SINE Alu -4 308 1 723 218 0 0 chr6 17468999 17469132 -171810422 - FLAM_A SINE Alu 0 133 1 1132 75 0 0 chr6 17469166 17469300 -171810254 + AluY SINE Alu 1 134 -177 2419 86 0 3 chr6 17469300 17469604 -171809950 + AluY SINE Alu 1 303 -8 777 183 84 120 chr6 17469606 17469973 -171809581 - L1MC4 LINE L1 -1 8041 7688 590 229 65 6 chr6 17470833 17471003 -171808551 - MIR SINE MIR -1 261 82 3413 183 60 93 chr6 17471090 17471933 -171807621 + L1MC5 LINE L1 6696 7565 -396 751 163 0 52 chr6 17471933 17472068 -171807486 + FLAM_C SINE Alu 5 132 -1 3413 183 60 93 chr6 17472068 17472345 -171807209 + L1MC5 LINE L1 7565 7772 -189 646 233 0 8 chr6 17472345 17472478 -171807076 + FLAM_A SINE Alu 1 132 -1 3413 183 60 93 chr6 17472478 17472629 -171806925 + L1MC5 LINE L1 7772 7926 -35 1717 177 99 46 chr6 17472804 17472835 -171806719 + L1M1 LINE L1 18 46 -7519 2150 96 32 0 chr6 17472835 17473117 -171806437 + AluSp SINE Alu 1 291 -22 1717 177 99 46 chr6 17473117 17473497 -171806057 + L1M1 LINE L1 46 451 -7114 6125 149 106 66 chr6 17473501 17475257 -171804297 - pTR5 LTR ERV1 0 2438 738 1428 186 0 0 chr6 17475257 17475493 -171804061 - AluJb SINE Alu -76 236 1 2406 85 3 3 chr6 17477863 17478169 -171801385 - AluSg SINE Alu -4 306 1 524 173 10 139 chr6 17478647 17478759 -171800795 + L1MB8 LINE L1 4136 4210 -1936 666 138 81 32 chr6 17478759 17478882 -171800672 + FLAM_C SINE Alu 1 129 -4 524 173 10 139 chr6 17478882 17478977 -171800577 + L1MB8 LINE L1 4210 4316 -1830 2151 96 0 3 chr6 17478985 17479267 -171800287 + AluSx SINE Alu 15 295 -17 3312 202 52 13 chr6 17479267 17480251 -171799303 + L1MB8 LINE L1 4535 5555 -629 2374 126 8 3 chr6 17480264 17480620 -171798934 + L1PA16 LINE L1 5792 6149 -17 3267 170 1 55 chr6 17480639 17481297 -171798257 + L1MB8 LINE L1 5550 6172 -6 1164 90 13 0 chr6 17481434 17481589 -171797965 + AluJb SINE Alu 156 312 0 569 136 0 11 chr6 17481612 17481700 -171797854 + U6 snRNA snRNA 1 87 -20 250 304 22 11 chr6 17481719 17481811 -171797743 - MIR SINE MIR -99 109 17 1374 211 4 15 chr6 17482585 17482850 -171796704 - AluJb SINE Alu -50 262 1 484 240 65 19 chr6 17483792 17483946 -171795608 + MIR3 SINE MIR 30 190 -18 2303 82 3 0 chr6 17483956 17484259 -171795295 + AluSx SINE Alu 1 304 0 1616 117 91 25 chr6 17484397 17484671 -171794883 + AluSx SINE Alu 1 292 -20 1646 161 29 18 chr6 17485520 17485799 -171793755 + AluJo SINE Alu 1 282 -30 1144 163 5 0 chr6 17485809 17485993 -171793561 + AluJo SINE Alu 119 303 -9 27 49 0 0 chr6 17486848 17486889 -171792665 + AT_rich Low_complexity Low_complexity 1 41 0 1222 96 18 0 chr6 17486945 17487112 -171792442 - Charlie3 DNA MER1_type -5 2705 2536 207 0 0 0 chr6 17537580 17537603 -171741951 + (A)n Simple_repeat Simple_repeat 1 23 0 2005 150 7 0 chr6 17537615 17537909 -171741645 - AluSx SINE Alu -16 296 1 491 247 161 0 chr6 17538016 17538190 -171741364 + MIR SINE MIR 57 258 -4 1682 108 0 62 chr6 17538310 17538570 -171740984 + AluSg1 SINE Alu 59 302 -7 281 212 40 81 chr6 17538709 17538808 -171740746 + MER21B LTR ERV1 12 106 -757 * 346 227 0 0 chr6 17538806 17538872 -171740682 + MER21B LTR ERV1 19 84 -779 328 203 16 0 chr6 17538879 17538943 -171740611 + MER21B LTR ERV1 42 106 -757 * 1122 252 59 35 chr6 17538941 17539390 -171740164 + MER21B LTR ERV1 19 492 -371 1874 203 37 6 chr6 17539604 17539958 -171739596 - MLT1A1 LTR MaLR 0 365 1 276 250 59 0 chr6 17539984 17540052 -171739502 + MIR SINE MIR 81 152 -56 2815 72 94 17 chr6 17541030 17541446 -171738108 - LTR7 LTR ERV1 -2 448 1 2175 108 53 16 chr6 17541446 17541824 -171737730 - HERVH LTR ERV1 0 7713 7322 1371 120 18 5 chr6 17541822 17542039 -171737515 - HERVH LTR ERV1 -1894 5819 5600 * 4257 143 0 1 chr6 17542040 17542703 -171736851 - HERVH LTR ERV1 -2564 5149 4488 3381 97 4 6 chr6 17542705 17543208 -171736346 - HERVH LTR ERV1 -3720 3993 3492 817 169 20 0 chr6 17543198 17543346 -171736208 - HERVH LTR ERV1 -4423 3290 3140 * 6122 86 0 12 chr6 17543330 17544221 -171735333 - HERVH LTR ERV1 -4720 2993 2114 14650 84 16 36 chr6 17544227 17547103 -171732451 - HERVH LTR ERV1 -5004 2709 1 2892 65 95 7 chr6 17547105 17547517 -171732037 - LTR7 LTR ERV1 -2 448 1 650 256 0 0 chr6 17547754 17547875 -171731679 - FLAM_C SINE Alu -21 122 2 213 337 74 0 chr6 17547921 17548016 -171731538 - MIR SINE MIR -62 146 45 2837 143 32 88 chr6 17548084 17549119 -171730435 + LTR12 LTR ERV1 1 1093 379 1970 86 76 31 chr6 17549119 17549409 -171730145 + AluY SINE Alu 1 303 -8 2837 143 32 88 chr6 17549409 17549680 -171729874 + LTR12 LTR ERV1 1093 379 -335 2259 70 7 30 chr6 17549680 17549978 -171729576 + AluY SINE Alu 1 291 -20 2837 143 32 88 chr6 17549978 17550298 -171729256 + LTR12 LTR ERV1 378 714 0 1679 120 139 4 chr6 17550916 17551175 -171728379 - AluSx SINE Alu -15 297 4 245 185 0 56 chr6 17551197 17551251 -171728303 + MER58 DNA MER1_type 2 52 -172 899 146 13 13 chr6 17551327 17551485 -171728069 + L1MB3 LINE L1 6009 6166 -17 30 27 0 0 chr6 17551485 17551522 -171728032 + AT_rich Low_complexity Low_complexity 1 37 0 247 213 0 0 chr6 17551522 17551583 -171727971 - L1MB4 LINE L1 -28 6152 6092 32 26 0 0 chr6 17551584 17551623 -171727931 + AT_rich Low_complexity Low_complexity 1 39 0 348 316 88 10 chr6 17551743 17551936 -171727618 - MIR SINE MIR -7 255 48 1477 161 61 72 chr6 17552047 17552112 -171727442 - MLT1A1 LTR MaLR -8 357 293 2087 152 0 3 chr6 17552112 17552421 -171727133 + AluJb SINE Alu 1 308 -4 1477 161 61 72 chr6 17552421 17552716 -171726838 - MLT1A1 LTR MaLR -72 293 1 819 147 0 16 chr6 17553503 17553632 -171725922 + FLAM_C SINE Alu 1 127 -16 2117 148 0 3 chr6 17553802 17554107 -171725447 + AluJb SINE Alu 1 304 -8 750 272 204 27 chr6 17554296 17554527 -171725027 - L1ME4a LINE L1 -6 6115 5926 2263 107 16 3 chr6 17554527 17554835 -171724719 + AluSx SINE Alu 1 312 0 750 272 204 27 chr6 17554835 17555332 -171724222 - L1ME4a LINE L1 -195 5926 5258 793 170 7 22 chr6 17555426 17555561 -171723993 - FLAM_C SINE Alu 0 133 1 2378 99 0 3 chr6 17556410 17556712 -171722842 - AluSc SINE Alu -8 301 1 1796 176 0 39 chr6 17558374 17558686 -171720868 + AluJb SINE Alu 1 300 -12 2251 99 7 3 chr6 17558776 17559069 -171720485 - AluSx SINE Alu -18 294 1 220 307 40 13 chr6 17560164 17560239 -171719315 - L2 LINE L2 -3 3310 3234 333 316 58 6 chr6 17560340 17560511 -171719043 - L2 LINE L2 -232 3040 2861 202 306 82 37 chr6 17560824 17560958 -171718596 - MIR SINE MIR -35 227 88 1053 228 17 31 chr6 17561763 17562159 -171717395 - MLT1C LTR MaLR -6 384 1 203 250 0 0 chr6 17562977 17563017 -171716537 - L2 LINE L2 0 3313 3274 223 270 0 100 chr6 17563230 17563330 -171716224 + MER5A DNA MER1_type 1 90 -99 889 149 48 43 chr6 17563696 17563884 -171715670 + MER5A DNA MER1_type 1 189 0 2340 80 13 25 chr6 17564092 17564406 -171715148 - AluSg SINE Alu 0 310 1 319 246 32 87 chr6 17564967 17565093 -171714461 - L1ME4a LINE L1 -1 6120 6002 287 211 40 13 chr6 17565093 17565169 -171714385 + MIR SINE MIR 51 128 -134 2322 119 0 0 chr6 17565402 17565704 -171713850 - AluSx SINE Alu -7 305 4 2429 87 10 0 chr6 17567336 17567645 -171711909 + AluSq SINE Alu 1 312 -1 180 111 0 0 chr6 17568455 17568482 -171711072 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 2036 128 33 10 chr6 17569227 17569532 -171710022 + AluSx SINE Alu 1 312 0 319 271 112 47 chr6 17569649 17569819 -171709735 - MIR3 SINE MIR -9 199 19 4172 163 35 31 chr6 17570689 17571906 -171707648 + pTR5 LTR ERV1 761 2296 -142 197 377 66 9 chr6 17572345 17572451 -171707103 + L3 LINE CR1 1447 1558 -19 945 67 0 0 chr6 17572457 17572576 -171706978 - AluSx SINE Alu 0 309 191 1089 121 0 0 chr6 17572577 17572717 -171706837 - AluSx SINE Alu -171 141 2 2222 135 0 0 chr6 17573811 17574123 -171705431 - AluSx SINE Alu 0 312 1 1868 171 7 0 chr6 17574228 17574526 -171705028 + AluJo SINE Alu 1 300 -12 207 0 0 0 chr6 17575616 17575639 -171703915 + (TC)n Simple_repeat Simple_repeat 2 24 0 231 345 99 9 chr6 17575743 17575878 -171703676 - MIR SINE MIR -61 147 49 1935 107 0 0 chr6 17576162 17576405 -171703149 + AluSq SINE Alu 48 290 -23 200 152 43 0 chr6 17578054 17578100 -171701454 + CT-rich Low_complexity Low_complexity 3 50 0 2216 119 13 10 chr6 17579265 17579576 -171699978 - AluJb SINE Alu 0 312 1 2156 120 13 0 chr6 17579791 17580090 -171699464 - AluSx SINE Alu -9 303 1 1921 166 10 0 chr6 17580989 17581285 -171698269 - AluJo SINE Alu -13 299 1 26 50 0 0 chr6 17583162 17583202 -171696352 + AT_rich Low_complexity Low_complexity 1 40 0 269 243 114 0 chr6 17589926 17589996 -171689558 + L2 LINE L2 3153 3230 -42 2153 112 0 23 chr6 17589997 17590302 -171689252 + AluSx SINE Alu 1 298 -14 244 201 9 50 chr6 17590319 17590425 -171689129 + L1MEd LINE L1 11 163 -5956 2042 131 3 20 chr6 17590481 17590786 -171688768 + AluSq SINE Alu 1 300 -13 1181 92 0 7 chr6 17590786 17590932 -171688622 + AluSg/x SINE Alu 135 279 -33 351 0 0 0 chr6 17590932 17590971 -171688583 + (CA)n Simple_repeat Simple_repeat 1 39 0 2012 134 7 10 chr6 17591546 17591867 -171687687 + AluJo SINE Alu 1 320 0 483 273 35 51 chr6 17591900 17592304 -171687250 + L1MEd LINE L1 920 1210 -4909 1639 111 0 0 chr6 17592352 17592560 -171686994 + AluSq SINE Alu 1 208 -105 1575 100 0 27 chr6 17592610 17592830 -171686724 - AluSc SINE Alu -85 224 11 430 325 61 35 chr6 17593161 17593392 -171686162 - MIR SINE MIR -6 256 20 206 246 49 0 chr6 17593639 17593700 -171685854 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 261 86 0 0 chr6 17594381 17594416 -171685138 + Alu SINE Alu 18 52 -250 1073 55 31 0 chr6 17594624 17594752 -171684802 + AluSq/x SINE Alu 1 132 -180 757 223 34 107 chr6 17594758 17594943 -171684611 + MER87 LTR ERV1 239 391 -150 2005 134 14 7 chr6 17594943 17595235 -171684319 - AluSx SINE Alu -18 294 1 757 223 34 107 chr6 17595235 17595376 -171684178 + MER87 LTR ERV1 391 541 0 253 151 0 57 chr6 17595392 17595445 -171684109 + Alu SINE Alu 235 284 -17 216 0 0 0 chr6 17595445 17595469 -171684085 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2189 110 0 17 chr6 17595613 17595912 -171683642 - AluSx SINE Alu -14 298 5 2320 102 16 0 chr6 17596662 17596965 -171682589 - AluSx SINE Alu -4 308 1 206 244 0 0 chr6 17597024 17597065 -171682489 - L2 LINE L2 -9 3263 3223 885 276 118 34 chr6 17597164 17597707 -171681847 + L2 LINE L2 2295 3082 -231 1663 157 3 64 chr6 17597723 17598036 -171681518 - AluJo SINE Alu -18 294 1 1884 130 34 25 chr6 17598053 17598376 -171681178 + MER1B DNA MER1_type 1 326 -13 242 226 0 151 chr6 17598418 17598511 -171681043 + L2 LINE L2 3221 3299 -14 2289 115 0 6 chr6 17598519 17598831 -171680723 + AluSg SINE Alu 1 310 0 180 0 0 0 chr6 17598920 17598940 -171680614 + (T)n Simple_repeat Simple_repeat 1 20 0 2148 121 0 0 chr6 17599361 17599670 -171679884 - AluSx SINE Alu 0 311 3 1998 137 0 3 chr6 17600992 17601277 -171678277 + AluJo SINE Alu 11 294 -18 2564 161 77 4 chr6 17601295 17601799 -171677755 + L1MC2 LINE L1 5799 6339 -5 216 352 24 32 chr6 17603093 17603218 -171676336 - MIR3 SINE MIR -81 127 4 1972 150 0 10 chr6 17603987 17604300 -171675254 + AluJo SINE Alu 1 310 -2 235 234 0 0 chr6 17604330 17604377 -171675177 - MIR SINE MIR -68 140 94 2311 98 9 22 chr6 17605286 17605602 -171673952 + AluSx SINE Alu 1 312 0 1690 183 10 29 chr6 17606207 17606513 -171673041 + AluJo SINE Alu 1 300 -12 1841 166 43 116 chr6 17606928 17607166 -171672388 + MER74A LTR ERVL 1 255 -303 2329 101 0 0 chr6 17607166 17607464 -171672090 - AluSx SINE Alu -14 298 1 1841 166 43 116 chr6 17607464 17607804 -171671750 + MER74A LTR ERVL 255 537 -21 927 192 6 0 chr6 17607822 17607978 -171671576 - FAM SINE Alu -18 157 1 713 265 41 0 chr6 17608118 17608314 -171671240 - MER105 DNA DNA 0 204 1 780 21 0 0 chr6 17609680 17609774 -171669780 + (CTG)n Simple_repeat Simple_repeat 2 95 0 223 169 15 62 chr6 17610522 17610587 -171668967 + GA-rich Low_complexity Low_complexity 1 62 0 1804 117 0 64 chr6 17610708 17611006 -171668548 + AluSc SINE Alu 31 309 0 219 36 0 0 chr6 17611447 17611475 -171668079 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr6 17612119 17612146 -171667408 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 747 154 0 0 chr6 17612148 17612258 -171667296 - FLAM_C SINE Alu -26 117 8 1844 150 31 0 chr6 17612440 17612733 -171666821 - AluSx SINE Alu -10 302 1 2329 79 3 3 chr6 17613059 17613351 -171666203 - AluSx SINE Alu -20 292 1 218 204 56 0 chr6 17614438 17614492 -171665062 + GA-rich Low_complexity Low_complexity 1 57 0 517 216 288 0 chr6 17614886 17615025 -171664529 + MER5A DNA MER1_type 10 188 -1 1166 308 81 77 chr6 17615914 17616508 -171663046 + L3 LINE CR1 436 1035 -542 1787 150 86 4 chr6 17616508 17616788 -171662766 + AluJo SINE Alu 1 303 -9 1166 308 81 77 chr6 17616788 17616981 -171662573 + L3 LINE CR1 1035 1226 -351 338 278 111 50 chr6 17617000 17617180 -171662374 + L3 LINE CR1 1385 1575 -2 23 54 0 0 chr6 17617594 17617631 -171661923 + AT_rich Low_complexity Low_complexity 1 37 0 1107 238 83 45 chr6 17617650 17618095 -171661459 + MLT1C LTR MaLR 6 467 0 439 263 206 0 chr6 17618095 17618270 -171661284 - MIR SINE MIR -3 259 49 213 227 127 67 chr6 17619871 17620021 -171659533 - MIR SINE MIR -97 165 7 22 0 0 0 chr6 17620079 17620101 -171659453 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 31 chr6 17620242 17620262 -171659292 + AT_rich Low_complexity Low_complexity 1 21 -10 2252 96 0 0 chr6 17620262 17620553 -171659001 + AluY SINE Alu 1 291 -20 21 0 0 31 chr6 17620553 17620564 -171658990 + AT_rich Low_complexity Low_complexity 21 31 0 362 252 34 5 chr6 17621652 17621754 -171657800 - MIR SINE MIR -40 168 66 2433 85 0 0 chr6 17621837 17622131 -171657423 - AluSc SINE Alu -15 294 1 1221 241 108 70 chr6 17622158 17622676 -171656878 + MER77 LTR ERV1 62 599 -6 680 259 24 6 chr6 17623389 17623555 -171655999 + MER5B DNA MER1_type 10 178 0 2587 59 0 3 chr6 17623565 17623869 -171655685 - AluY SINE Alu -8 303 1 2141 92 26 29 chr6 17623928 17624234 -171655320 - AluSx SINE Alu -7 305 1 3138 170 48 50 chr6 17624339 17625092 -171654462 + L1MB3 LINE L1 5432 6182 -1 2293 71 4 4 chr6 17625114 17625416 -171654138 + AluY SINE Alu 1 302 0 467 277 18 24 chr6 17625761 17625927 -171653627 - MER58B DNA MER1_type 0 341 177 392 271 9 9 chr6 17626025 17626132 -171653422 - MER5A DNA MER1_type -82 107 1 2129 157 28 28 chr6 17626347 17626904 -171652650 + MLT2A2 LTR ERVL 3 554 0 210 37 0 0 chr6 17628109 17628136 -171651418 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1742 106 7 59 chr6 17628147 17628420 -171651134 - AluSq SINE Alu -54 259 1 23 0 0 0 chr6 17628420 17628443 -171651111 + AT_rich Low_complexity Low_complexity 1 23 0 309 238 12 12 chr6 17628694 17628778 -171650776 - AluJ/FRAM SINE Alu -1 301 218 5082 131 71 47 chr6 17628778 17629880 -171649674 + pTR5 LTR ERV1 769 2025 -413 244 298 0 0 chr6 17629880 17629974 -171649580 + LTR30 LTR ERV1 544 637 -85 1135 175 5 0 chr6 17629974 17630163 -171649391 + LTR12 LTR ERV1 369 558 -156 561 210 67 17 chr6 17630168 17630287 -171649267 - AluJo SINE Alu -58 254 130 667 248 0 0 chr6 17630291 17630416 -171649138 - AluJo SINE Alu -177 125 1 267 276 72 92 chr6 17630418 17630467 -171649087 + MIR SINE MIR 104 152 -110 1870 150 24 14 chr6 17630467 17630760 -171648794 + AluSq SINE Alu 1 296 -17 267 276 72 92 chr6 17630760 17630862 -171648692 + MIR SINE MIR 152 252 -10 312 268 43 46 chr6 17630904 17631023 -171648531 + MIR SINE MIR 10 125 -83 510 246 90 0 chr6 17631036 17631158 -171648396 + MIR SINE MIR 98 230 -32 2468 98 0 0 chr6 17631274 17631580 -171647974 + AluSc SINE Alu 1 306 -3 399 230 53 18 chr6 17632245 17632358 -171647196 + MIR SINE MIR 75 191 -71 336 271 60 84 chr6 17632802 17632851 -171646703 + MIR SINE MIR 95 144 -118 1817 155 3 23 chr6 17632851 17633154 -171646400 + AluJb SINE Alu 1 297 -15 336 271 60 84 chr6 17633154 17633270 -171646284 + MIR SINE MIR 144 256 -6 2106 140 0 16 chr6 17633439 17633753 -171645801 - AluJb SINE Alu -3 309 1 2723 160 49 13 chr6 17634725 17635251 -171644303 - MER44D DNA MER2_type 0 605 6 2237 119 0 3 chr6 17635444 17635747 -171643807 + AluSg SINE Alu 1 302 -8 297 287 85 24 chr6 17635872 17636036 -171643518 + MER5A DNA MER1_type 10 183 -6 * 331 248 99 49 chr6 17635899 17636041 -171643513 - MER5B DNA MER1_type -25 153 2 532 240 149 7 chr6 17636052 17636206 -171643348 + MER5B DNA MER1_type 3 178 0 2174 95 25 0 chr6 17636316 17636599 -171642955 - AluY SINE Alu -19 292 3 2427 80 0 7 chr6 17637612 17637914 -171641640 - AluSx SINE Alu -12 300 1 2237 102 0 0 chr6 17639262 17639615 -171639939 - AluSx SINE Alu 0 353 1 4834 85 25 9 chr6 17640177 17640616 -171638938 + L1PB1 LINE L1 5457 5912 -239 8969 90 21 8 chr6 17640616 17641878 -171637676 + MER52C LTR ERV1 1 1278 0 4834 85 25 9 chr6 17641878 17642121 -171637433 + L1PB1 LINE L1 5912 6150 -1 203 232 18 18 chr6 17642217 17642273 -171637281 - MER5B DNA MER1_type -4 174 119 24 0 0 0 chr6 17642431 17642455 -171637099 + AT_rich Low_complexity Low_complexity 1 24 0 283 261 76 42 chr6 17645255 17645374 -171634180 + L2 LINE L2 3191 3313 0 2416 65 7 0 chr6 17646355 17646647 -171632907 - AluY SINE Alu -17 294 1 571 69 0 0 chr6 17647116 17647188 -171632366 - L1PA5 LINE L1 -9 6145 6074 2284 109 0 7 chr6 17647223 17647526 -171632028 - AluSx SINE Alu -11 301 1 2406 103 0 0 chr6 17648546 17648856 -171630698 + AluSx SINE Alu 1 310 -2 249 33 0 0 chr6 17649380 17649410 -171630144 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 288 53 0 0 chr6 17649409 17649447 -171630107 + (CA)n Simple_repeat Simple_repeat 1 38 0 904 225 57 134 chr6 17649649 17649973 -171629581 + MLT1J LTR MaLR 24 293 -218 1840 122 4 11 chr6 17649973 17650243 -171629311 + AluSx SINE Alu 44 311 -1 904 225 57 134 chr6 17650243 17650447 -171629107 + MLT1J LTR MaLR 293 511 0 189 229 98 0 chr6 17650447 17650508 -171629046 - MIR3 SINE MIR -31 177 111 188 329 25 38 chr6 17652110 17652268 -171627286 - MIR SINE MIR -45 217 62 303 245 124 42 chr6 17652569 17652810 -171626744 - L1ME4a LINE L1 -2 6119 5859 1695 124 19 102 chr6 17653600 17653922 -171625632 - AluJo SINE Alu -17 295 1 1653 173 7 11 chr6 17654675 17655010 -171624544 + AluJb SINE Alu 1 334 0 2273 122 36 30 chr6 17655536 17655898 -171623656 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr6 17659007 17659027 -171620527 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1424 161 37 4 chr6 17659059 17659301 -171620253 + MLT1A1 LTR MaLR 116 365 0 292 327 64 35 chr6 17660343 17660545 -171619009 - MIR SINE MIR -48 214 7 1751 158 11 7 chr6 17660563 17660882 -171618672 - AluJb SINE Alu 0 322 3 3601 102 17 4 chr6 17660916 17661438 -171618116 + L1PB1 LINE L1 5620 6148 -3 294 236 34 79 chr6 17661604 17661693 -171617861 - L2 LINE L2 0 3272 3188 220 220 0 20 chr6 17661913 17661963 -171617591 + GA-rich Low_complexity Low_complexity 4 52 0 217 217 22 0 chr6 17662285 17662331 -171617223 - L2 LINE L2 -2 3270 3224 1850 194 94 27 chr6 17662849 17663033 -171616521 + MLT1C LTR MaLR 1 171 -296 2174 98 14 0 chr6 17663033 17663319 -171616235 + AluSg SINE Alu 1 290 -20 1850 194 94 27 chr6 17663319 17663572 -171615982 + MLT1C LTR MaLR 171 467 0 877 146 7 14 chr6 17664085 17664229 -171615325 + AluJo SINE Alu 1 143 -169 458 113 0 0 chr6 17664229 17664291 -171615263 + AluY SINE Alu 188 249 -62 1163 187 14 5 chr6 17664291 17664505 -171615049 + AluJo SINE Alu 85 300 -12 885 94 0 0 chr6 17664749 17664866 -171614688 + MER30 DNA MER1_type 1 117 -113 207 326 109 64 chr6 17666460 17666559 -171612995 - L2 LINE L2 -1 3271 3178 2232 112 146 8 chr6 17666559 17666935 -171612619 + MSTA LTR MaLR 1 428 0 207 326 109 64 chr6 17666935 17667240 -171612314 - L2 LINE L2 -94 3178 2849 945 127 0 15 chr6 17668861 17668995 -171610559 - FLAM_C SINE Alu -11 132 1 324 285 81 32 chr6 17669013 17669136 -171610418 + L2 LINE L2 3144 3272 0 25 31 0 0 chr6 17670915 17670947 -171608607 + AT_rich Low_complexity Low_complexity 1 32 0 2456 74 0 7 chr6 17671078 17671388 -171608166 + AluSg SINE Alu 1 308 -2 284 68 0 23 chr6 17672698 17672742 -171606812 + (CA)n Simple_repeat Simple_repeat 2 44 0 2264 114 0 3 chr6 17672902 17673208 -171606346 + AluSx SINE Alu 1 305 -7 24 53 0 0 chr6 17673255 17673293 -171606261 + AT_rich Low_complexity Low_complexity 1 38 0 315 291 50 62 chr6 17673357 17673536 -171606018 + MER5B DNA MER1_type 1 177 -1 2246 114 3 0 chr6 17674522 17674819 -171604735 - AluSq SINE Alu -15 298 1 475 177 291 14 chr6 17674850 17674991 -171604563 + MER5A DNA MER1_type 1 180 -9 32 0 0 0 chr6 17675246 17675278 -171604276 + AT_rich Low_complexity Low_complexity 1 32 0 1347 190 88 4 chr6 17675285 17675548 -171604006 - AluJo SINE Alu -17 295 11 886 134 0 0 chr6 17675759 17675878 -171603676 + AluSg SINE Alu 1 119 -191 911 170 0 0 chr6 17676439 17676610 -171602944 - L1MA6 LINE L1 0 6300 6130 651 216 162 18 chr6 17676931 17677057 -171602497 - MER63B DNA MER1_type -626 434 328 2007 76 8 8 chr6 17677057 17677321 -171602233 + AluSp SINE Alu 47 310 -3 651 216 162 18 chr6 17677321 17677416 -171602138 - MER63B DNA MER1_type -732 328 181 3228 171 17 17 chr6 17677419 17677759 -171601795 + Tigger3b DNA MER2_type 4 346 -2682 2342 92 3 13 chr6 17677759 17678064 -171601490 + AluSc SINE Alu 1 302 -7 3228 171 17 17 chr6 17678064 17678325 -171601229 + Tigger3b DNA MER2_type 345 605 -626 754 180 0 0 chr6 17678325 17678447 -171601107 + FLAM_C SINE Alu 3 124 -19 3529 114 31 75 chr6 17678448 17679114 -171600440 + Tigger3b DNA MER2_type 596 1232 0 763 259 31 0 chr6 17679116 17679278 -171600276 - MER63B DNA MER1_type -254 182 16 2032 107 26 0 chr6 17679285 17679556 -171599998 - AluSx SINE Alu -1 311 34 324 260 189 8 chr6 17679914 17680041 -171599513 - MIR SINE MIR -65 197 48 279 257 0 14 chr6 17680544 17680615 -171598939 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 832 180 40 92 chr6 17681649 17681877 -171597677 + MER20 DNA MER1_type 4 219 0 385 193 11 0 chr6 17682007 17682095 -171597459 + MER5A DNA MER1_type 18 106 -83 288 274 86 57 chr6 17682217 17682392 -171597162 + L2 LINE L2 258 437 -2877 888 172 10 69 chr6 17683350 17683553 -171596001 + AluJb SINE Alu 14 204 -108 2207 103 53 42 chr6 17683858 17684217 -171595337 - THE1B LTR MaLR -1 363 1 252 0 0 0 chr6 17684270 17684298 -171595256 + (T)n Simple_repeat Simple_repeat 1 28 0 335 298 0 11 chr6 17685071 17685165 -171594389 + (CATATA)n Simple_repeat Simple_repeat 5 97 0 1984 163 0 0 chr6 17685380 17685669 -171593885 - AluJb SINE Alu -23 289 1 246 283 17 0 chr6 17686680 17686740 -171592814 + (CACG)n Simple_repeat Simple_repeat 1 61 0 4872 48 7 0 chr6 17688489 17689076 -171590478 + LTR10C LTR ERV1 1 591 0 795 194 26 7 chr6 17690776 17690931 -171588623 - FRAM SINE Alu -23 153 1 232 303 15 0 chr6 17690948 17691014 -171588540 + L2 LINE L2 3247 3313 0 2184 129 0 0 chr6 17691391 17691694 -171587860 + AluSx SINE Alu 1 303 -9 4877 165 19 25 chr6 17692477 17693477 -171586077 + L1MB5 LINE L1 5179 6173 -1 2240 108 0 26 chr6 17695567 17695872 -171583682 - AluSx SINE Alu -15 297 1 21 0 0 0 chr6 17696948 17696969 -171582585 + AT_rich Low_complexity Low_complexity 1 21 0 208 211 0 53 chr6 17697835 17697892 -171581662 - L2 LINE L2 -78 3194 3141 206 118 0 0 chr6 17697972 17698006 -171581548 + (A)n Simple_repeat Simple_repeat 1 34 0 354 152 61 0 chr6 17698914 17698980 -171580574 - MLT1E3 LTR MaLR 0 624 555 1984 29 0 13 chr6 17699012 17699250 -171580304 - L1PA3 LINE L1 0 6155 5921 2200 215 65 19 chr6 17699250 17699831 -171579723 - MLT1E3 LTR MaLR -55 599 1 2354 88 0 38 chr6 17699856 17700175 -171579379 + AluSq SINE Alu 1 307 -6 1121 134 29 0 chr6 17700191 17700362 -171579192 + AluSg/x SINE Alu 132 307 -5 674 324 73 32 chr6 17700362 17700733 -171578821 - MLT1K LTR MaLR -97 491 106 201 154 0 0 chr6 17701279 17701318 -171578236 + T-rich Low_complexity Low_complexity 1 39 0 912 150 0 7 chr6 17701453 17701606 -171577948 + MER5A DNA MER1_type 2 153 -36 950 191 0 0 chr6 17701619 17701781 -171577773 - FRAM SINE Alu -4 162 1 200 333 30 30 chr6 17702012 17702144 -171577410 + L3b LINE CR1 1216 1347 -236 322 319 86 43 chr6 17703535 17703886 -171575668 + L2 LINE L2 2946 3311 -2 405 0 0 0 chr6 17706390 17706460 -171573094 + (CA)n Simple_repeat Simple_repeat 1 115 0 405 0 0 0 chr6 17706460 17706505 -171573049 + (CA)n Simple_repeat Simple_repeat 2 46 0 184 319 14 14 chr6 17706873 17706942 -171572612 + MIR SINE MIR 36 104 -104 1866 170 0 10 chr6 17706996 17707302 -171572252 - AluJb SINE Alu -9 303 1 205 333 124 47 chr6 17708357 17708486 -171571068 + MIR3 SINE MIR 30 168 -40 477 245 101 79 chr6 17708946 17709224 -171570330 + L2 LINE L2 3027 3310 -3 2216 121 0 10 chr6 17711275 17711582 -171567972 - AluSx SINE Alu -7 305 2 2210 94 0 11 chr6 17715304 17715581 -171563973 + AluSx SINE Alu 25 298 -14 211 289 107 25 chr6 17715623 17715744 -171563810 + MIR SINE MIR 16 146 -62 463 320 35 10 chr6 17715799 17716002 -171563552 + MIR SINE MIR 29 236 -26 276 30 0 0 chr6 17716587 17716620 -171562934 + (TG)n Simple_repeat Simple_repeat 1 33 0 734 224 178 63 chr6 17716847 17717258 -171562296 - MLT1H LTR MaLR 0 549 92 273 282 93 26 chr6 17717266 17717486 -171562068 - L2 LINE L2 -320 2952 2715 276 149 0 0 chr6 17719741 17719788 -171559766 + (CA)n Simple_repeat Simple_repeat 1 47 0 279 0 0 0 chr6 17720230 17720261 -171559293 + (TG)n Simple_repeat Simple_repeat 2 32 0 714 162 0 9 chr6 17720614 17720725 -171558829 - FLAM_C SINE Alu -16 127 18 2480 174 50 6 chr6 17720953 17721448 -171558106 - L1MB3 LINE L1 0 6183 5667 2276 104 13 0 chr6 17721472 17721771 -171557783 - AluSq SINE Alu -10 303 1 210 91 0 0 chr6 17722288 17722321 -171557233 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 184 244 0 0 chr6 17722323 17722364 -171557190 - L2 LINE L2 0 3313 3273 2428 84 0 13 chr6 17722964 17723275 -171556279 + AluY SINE Alu 1 307 -4 323 267 43 74 chr6 17724591 17724917 -171554637 - L1ME4a LINE L1 -24 6097 5782 2328 96 3 10 chr6 17725105 17725418 -171554136 - AluY SINE Alu 0 311 1 216 0 0 0 chr6 17725969 17725993 -171553561 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2039 119 22 0 chr6 17725995 17726272 -171553282 - AluSq SINE Alu -30 283 1 1626 214 120 20 chr6 17726379 17726837 -171552717 - L1MC1 LINE L1 0 6333 5830 569 114 0 0 chr6 17726838 17726917 -171552637 - LTR12 LTR ERV1 -11 703 625 342 147 69 98 chr6 17726917 17727019 -171552535 - LTR30 LTR ERV1 -80 642 379 746 189 98 76 chr6 17727020 17727304 -171552250 - LTR12 LTR ERV1 -429 1523 48 268 163 0 0 chr6 17727304 17727347 -171552207 - LTR30 LTR ERV1 -679 43 1 10575 96 14 11 chr6 17727347 17728831 -171550723 - HERV9 LTR ERV1 0 8399 6911 38823 110 9 10 chr6 17728835 17735158 -171544396 - HERV9 LTR ERV1 -1921 6478 79 707 134 22 28 chr6 17735158 17735304 -171544250 - LTR12 LTR ERV1 0 714 301 319 232 30 20 chr6 17735304 17735403 -171544151 - LTR30 LTR ERV1 -79 643 544 274 176 88 15 chr6 17735403 17735471 -171544083 - LTR12 LTR ERV1 -437 277 205 742 172 142 12 chr6 17735511 17735680 -171543874 - LTR12 LTR ERV1 -480 234 44 241 186 0 0 chr6 17735680 17735723 -171543831 - LTR30 LTR ERV1 -679 43 1 2412 166 25 4 chr6 17735723 17736240 -171543314 - L1MB7 LINE L1 -359 5843 5283 521 238 9 0 chr6 17737180 17737285 -171542269 + L2 LINE L2 3198 3303 -10 2063 101 64 10 chr6 17737298 17737594 -171541960 - AluSq SINE Alu -1 312 1 188 204 0 23 chr6 17737618 17737662 -171541892 + MIR SINE MIR 86 128 -134 222 91 0 0 chr6 17737842 17737875 -171541679 + (ATG)n Simple_repeat Simple_repeat 3 35 0 2186 73 0 4 chr6 17737973 17738246 -171541308 - AluY SINE Alu -11 300 29 197 375 58 10 chr6 17738250 17738354 -171541200 - MIR SINE MIR -58 150 42 210 302 302 0 chr6 17739158 17739254 -171540300 - L2 LINE L2 0 3272 3148 2278 105 3 0 chr6 17739675 17739979 -171539575 - AluSp SINE Alu -8 305 1 1736 163 17 7 chr6 17739979 17740267 -171539287 - AluSx SINE Alu -21 291 1 184 247 82 41 chr6 17740663 17740736 -171538818 - MER5B DNA MER1_type -66 112 37 205 233 67 17 chr6 17742805 17742865 -171536689 - L2 LINE L2 -1 3271 3209 433 127 0 24 chr6 17742877 17743002 -171536552 + L1MA4 LINE L1 6010 6291 -9 470 283 215 29 chr6 17743013 17743445 -171536109 - L2 LINE L2 -107 3206 2698 872 160 0 0 chr6 17743796 17743927 -171535627 + AluJo/FLAM SINE Alu 1 131 -181 1953 149 3 0 chr6 17743929 17744217 -171535337 + AluSx SINE Alu 1 289 -23 34 24 0 0 chr6 17744217 17744258 -171535296 + AT_rich Low_complexity Low_complexity 1 41 0 404 295 50 14 chr6 17744853 17744992 -171534562 - MER5A DNA MER1_type -10 179 36 7565 21 0 0 chr6 17745112 17745930 -171533624 + L1PA3 LINE L1 5338 6155 0 2852 217 64 99 chr6 17745940 17747320 -171532234 - L1MC5 LINE L1 -47 7914 6609 2511 60 0 0 chr6 17747320 17747618 -171531936 - AluY SINE Alu -13 298 1 2852 217 64 99 chr6 17747618 17747807 -171531747 - L1MC5 LINE L1 -1352 6609 6415 28 0 0 0 chr6 17748055 17748083 -171531471 + AT_rich Low_complexity Low_complexity 1 28 0 1074 141 0 60 chr6 17748230 17748415 -171531139 - AluJo SINE Alu 0 312 139 2003 151 0 0 chr6 17748418 17748723 -171530831 - AluSx SINE Alu -7 305 1 430 294 106 25 chr6 17749158 17749393 -171530161 - HAL1b LINE L1 -749 599 346 350 316 69 53 chr6 17749413 17749660 -171529894 - HAL1b LINE L1 -1063 285 35 973 166 0 0 chr6 17750783 17750940 -171528614 - AluJo SINE Alu -1 311 155 1016 127 27 7 chr6 17751203 17751353 -171528201 - AluJo SINE Alu -159 153 1 2258 107 0 3 chr6 17751362 17751661 -171527893 - AluSq SINE Alu -15 298 1 230 73 24 0 chr6 17752075 17752116 -171527438 + (CCCCCG)n Simple_repeat Simple_repeat 6 47 0 1404 136 0 62 chr6 17753172 17753415 -171526139 + MER1B DNA MER1_type 1 228 -69 1177 269 273 9 chr6 17754214 17755158 -171524396 + L2 LINE L2 2103 3306 -7 634 271 106 19 chr6 17755176 17755255 -171524299 - MIR SINE MIR -1 261 190 2298 114 0 0 chr6 17755255 17755563 -171523991 + AluSx SINE Alu 1 308 -4 634 271 106 19 chr6 17755563 17755729 -171523825 - MIR SINE MIR -72 190 10 1062 294 59 50 chr6 17755771 17756515 -171523039 + L2 LINE L2 1853 2603 -711 401 259 94 62 chr6 17756545 17756769 -171522785 + L2 LINE L2 3078 3308 -5 269 345 34 0 chr6 17757560 17757679 -171521875 - MIR SINE MIR -61 147 25 23 33 0 0 chr6 17758290 17758320 -171521234 + AT_rich Low_complexity Low_complexity 1 30 0 216 200 0 0 chr6 17758727 17758772 -171520782 + A-rich Low_complexity Low_complexity 1 45 0 303 227 193 17 chr6 17759742 17759861 -171519693 + MIR SINE MIR 110 249 -13 351 65 0 0 chr6 17760700 17760746 -171518808 + (CA)n Simple_repeat Simple_repeat 2 47 0 185 246 15 0 chr6 17761085 17761150 -171518404 + CT-rich Low_complexity Low_complexity 2 67 0 230 303 106 28 chr6 17761544 17761686 -171517868 + MIR SINE MIR 40 192 -70 2216 109 30 0 chr6 17761735 17762038 -171517516 + AluSq SINE Alu 1 312 -1 649 238 124 0 chr6 17762737 17762930 -171516624 + MIR SINE MIR 33 249 -13 600 64 13 0 chr6 17762931 17763009 -171516545 + MADE1 DNA Mariner 1 79 -1 2148 130 0 0 chr6 17763034 17763334 -171516220 + AluSq SINE Alu 1 300 -13 1034 146 36 0 chr6 17764094 17764259 -171515295 + MER20 DNA MER1_type 49 219 0 183 162 0 0 chr6 17764794 17764831 -171514723 + CT-rich Low_complexity Low_complexity 2 38 0 279 54 0 0 chr6 17764831 17764868 -171514686 + (CA)n Simple_repeat Simple_repeat 1 37 0 237 33 0 0 chr6 17770597 17770627 -171508927 + (GA)n Simple_repeat Simple_repeat 1 30 0 46 19 0 0 chr6 17771975 17772028 -171507526 + AT_rich Low_complexity Low_complexity 1 53 0 621 251 0 108 chr6 17772117 17772205 -171507349 - MIR SINE MIR -3 259 163 773 202 0 0 chr6 17772205 17772334 -171507220 + FLAM_A SINE Alu 1 129 -4 621 251 0 108 chr6 17772334 17772468 -171507086 - MIR SINE MIR -99 163 61 1985 30 0 30 chr6 17772658 17772892 -171506662 + L1PA3 LINE L1 5926 6152 -3 210 268 113 14 chr6 17773277 17773348 -171506206 - L2 LINE L2 0 3313 3236 2334 96 0 0 chr6 17773715 17774018 -171505536 + AluY SINE Alu 1 303 -8 1564 186 20 30 chr6 17774118 17774419 -171505135 + AluJo SINE Alu 1 298 -14 404 259 15 52 chr6 17774856 17774991 -171504563 - MIR SINE MIR 0 262 133 2247 103 3 3 chr6 17775923 17776235 -171503319 + AluSx SINE Alu 1 312 0 21 57 0 0 chr6 17776281 17776316 -171503238 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 17776569 17776590 -171502964 + AT_rich Low_complexity Low_complexity 1 21 0 266 172 31 0 chr6 17777840 17777904 -171501650 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 508 285 140 22 chr6 17778133 17778361 -171501193 + MIR SINE MIR 2 256 -6 235 316 125 7 chr6 17779431 17779567 -171499987 - L2 LINE L2 -2 3311 3160 21 57 0 0 chr6 17780162 17780197 -171499357 + AT_rich Low_complexity Low_complexity 1 35 0 2280 118 0 3 chr6 17780297 17780610 -171498944 - AluSx SINE Alu 0 312 1 2171 129 0 0 chr6 17781779 17782082 -171497472 - AluSx SINE Alu -9 303 1 251 303 15 0 chr6 17782459 17782525 -171497029 - L2 LINE L2 0 3313 3247 860 194 26 7 chr6 17782542 17782697 -171496857 + FRAM SINE Alu 1 153 -23 193 254 8 185 chr6 17782712 17782842 -171496712 + MIR SINE MIR 34 140 -122 182 294 20 0 chr6 17784279 17784330 -171495224 + MIR SINE MIR 82 133 -75 5102 48 7 0 chr6 17784396 17784983 -171494571 - LTR10C LTR ERV1 0 591 1 246 283 17 0 chr6 17786731 17786791 -171492763 + (CGTG)n Simple_repeat Simple_repeat 1 61 0 1959 167 0 0 chr6 17787802 17788090 -171491464 + AluJb SINE Alu 1 288 -24 335 298 0 11 chr6 17788306 17788400 -171491154 + (TATATG)n Simple_repeat Simple_repeat 5 97 0 342 0 0 0 chr6 17789172 17789210 -171490344 + (A)n Simple_repeat Simple_repeat 1 38 0 2223 100 53 42 chr6 17789263 17789622 -171489932 + THE1B LTR MaLR 1 363 -1 888 172 10 69 chr6 17789926 17790129 -171489425 - AluJb SINE Alu -108 204 14 288 274 86 57 chr6 17791087 17791262 -171488292 - L2 LINE L2 -2877 437 258 385 193 11 0 chr6 17791384 17791472 -171488082 - MER5A DNA MER1_type -83 106 18 180 233 0 0 chr6 17792257 17792300 -171487254 + MER5A DNA MER1_type 67 109 -80 1822 164 26 7 chr6 17792480 17792785 -171486769 + AluJb SINE Alu 1 311 -1 550 147 0 0 chr6 17793635 17793710 -171485844 + AluJ/FLAM SINE Alu 16 90 -222 2023 74 0 8 chr6 17796746 17797037 -171482517 + AluSc SINE Alu 28 316 0 465 246 65 116 chr6 17798421 17798714 -171480840 + MLT1J2 LTR MaLR 132 450 0 472 281 44 7 chr6 17799346 17799481 -171480073 + MIR SINE MIR 77 216 -46 22 0 0 0 chr6 17799482 17799504 -171480050 + AT_rich Low_complexity Low_complexity 1 22 0 282 368 0 0 chr6 17799694 17799811 -171479743 + (CA)n Simple_repeat Simple_repeat 2 118 0 503 265 139 25 chr6 17799964 17800202 -171479352 - L2 LINE L2 -1 3312 3048 219 36 0 0 chr6 17803143 17803171 -171476383 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2394 62 20 0 chr6 17803300 17803605 -171475949 + AluY SINE Alu 1 311 0 255 340 49 6 chr6 17804098 17804260 -171475294 + MIR3 SINE MIR 33 201 -7 22 35 0 0 chr6 17804716 17804745 -171474809 + AT_rich Low_complexity Low_complexity 1 29 0 911 129 0 0 chr6 17805096 17805220 -171474334 - FLAM_C SINE Alu -19 124 1 319 289 26 0 chr6 17805280 17805394 -171474160 - MIR SINE MIR -118 144 28 723 159 45 64 chr6 17805430 17805587 -171473967 - AluJo SINE Alu -73 239 86 362 307 102 0 chr6 17806497 17806634 -171472920 + MIR SINE MIR 22 172 -90 2001 116 4 0 chr6 17806789 17807048 -171472506 + AluSx SINE Alu 1 260 -52 215 79 26 0 chr6 17807048 17807086 -171472468 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4712 93 31 4 chr6 17807154 17807830 -171471724 + L1MA1 LINE L1 5609 6302 0 269 159 16 0 chr6 17808029 17808092 -171471462 + (TA)n Simple_repeat Simple_repeat 1 64 0 2472 83 0 0 chr6 17808501 17808803 -171470751 + AluSq SINE Alu 1 302 -11 2260 112 0 0 chr6 17810038 17810342 -171469212 + AluSx SINE Alu 2 305 -7 442 207 111 0 chr6 17810673 17810808 -171468746 - MIR SINE MIR -56 206 57 2234 113 7 0 chr6 17810915 17811208 -171468346 + AluSx SINE Alu 1 295 -17 1203 125 15 10 chr6 17812592 17812792 -171466762 + L1PA13 LINE L1 5963 6163 0 2361 103 0 0 chr6 17813359 17813661 -171465893 + AluSq SINE Alu 1 302 -11 1022 224 23 0 chr6 17813965 17814184 -171465370 - MER58A DNA MER1_type 0 224 1 3227 135 19 29 chr6 17814531 17815245 -171464309 + L1MB3 LINE L1 5289 6166 0 589 254 75 30 chr6 17816469 17816670 -171462884 + MER63A DNA MER1_type 1 210 0 1843 162 32 60 chr6 17817255 17817656 -171461898 + L1MC3 LINE L1 6708 7097 -688 362 243 47 28 chr6 17817656 17817763 -171461791 + MLT1F1 LTR MaLR 35 143 -424 329 185 241 19 chr6 17817780 17817888 -171461666 + L1MC3 LINE L1 7201 7332 -453 * 359 177 0 0 chr6 17817884 17817946 -171461608 - L1MC4 LINE L1 -473 7569 7508 1557 145 31 55 chr6 17817946 17818274 -171461280 + AluJb SINE Alu 1 321 0 403 254 35 0 chr6 17818401 17818515 -171461039 + L1MC4 LINE L1 7924 8041 -1 2183 131 0 3 chr6 17819441 17819755 -171459799 + AluSq SINE Alu 1 313 0 1640 114 0 0 chr6 17819839 17820049 -171459505 + AluSq SINE Alu 1 210 -103 288 189 283 9 chr6 17820251 17820357 -171459197 + MIR SINE MIR 86 220 -42 2292 30 7 0 chr6 17820452 17820722 -171458832 - L1PA4 LINE L1 0 6155 5884 2119 110 7 0 chr6 17820722 17821004 -171458550 - AluSx SINE Alu -28 284 1 745 238 54 18 chr6 17822184 17822243 -171457311 - MIR SINE MIR -3 259 204 2247 84 7 3 chr6 17822243 17822528 -171457026 - AluSx SINE Alu -24 288 3 745 238 54 18 chr6 17822528 17822691 -171456863 - MIR SINE MIR -58 204 29 215 328 16 0 chr6 17822955 17823019 -171456535 - MIR SINE MIR -63 145 81 21 0 0 0 chr6 17823053 17823074 -171456480 + AT_rich Low_complexity Low_complexity 1 21 0 394 331 97 0 chr6 17823752 17823897 -171455657 - MIR3 SINE MIR -11 197 39 1966 144 9 35 chr6 17824698 17825046 -171454508 - MER44D DNA MER2_type 0 609 1 21 36 0 0 chr6 17825420 17825448 -171454106 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 17825651 17825672 -171453882 + (A)n Simple_repeat Simple_repeat 1 21 0 332 243 58 19 chr6 17826065 17826168 -171453386 + MIR3 SINE MIR 78 184 -24 214 227 0 121 chr6 17828541 17828607 -171450947 + MIR SINE MIR 18 75 -133 1844 205 65 23 chr6 17829514 17829957 -171449597 - MLT1C LTR MaLR 0 467 6 7063 143 32 18 chr6 17829979 17830663 -171448891 - Tigger3b DNA MER2_type -1797 1231 521 2047 116 10 10 chr6 17830663 17830978 -171448576 + AluSx SINE Alu 4 312 0 7063 143 32 18 chr6 17830978 17831507 -171448047 - Tigger3b DNA MER2_type -2507 521 1 2248 106 7 0 chr6 17831634 17831936 -171447618 + AluSp SINE Alu 1 304 -9 1356 136 4 26 chr6 17831943 17832171 -171447383 + L1PA8A LINE L1 5909 6131 0 382 293 23 2 chr6 17832602 17832758 -171446796 - MIR SINE MIR -63 145 17 272 230 159 15 chr6 17832903 17833044 -171446510 - MIR SINE MIR -40 168 37 185 341 0 12 chr6 17833692 17833777 -171445777 + L2 LINE L2 2228 2311 -1003 361 308 17 0 chr6 17835531 17835651 -171443903 + L2 LINE L2 3190 3311 -2 2313 94 0 7 chr6 17836474 17836772 -171442782 - AluSq SINE Alu -17 296 1 1092 98 0 0 chr6 17836776 17836909 -171442645 - AluSq/x SINE Alu -179 133 1 280 188 31 0 chr6 17837371 17837435 -171442119 - MIR SINE MIR -124 138 73 401 297 121 45 chr6 17838686 17839060 -171440494 + L1MC4a LINE L1 4037 4456 -1690 2084 133 3 10 chr6 17839060 17839369 -171440185 + AluSq SINE Alu 1 307 -6 401 297 121 45 chr6 17839369 17839466 -171440088 + L1MC4a LINE L1 4456 4544 -1602 269 293 148 24 chr6 17839518 17839897 -171439657 + L1MC4a LINE L1 4622 5047 -1099 * 1283 203 15 14 chr6 17839870 17840150 -171439404 + L1MB7 LINE L1 5829 6109 -75 1095 161 6 0 chr6 17840174 17840348 -171439206 + FRAM SINE Alu 1 175 -1 228 150 0 117 chr6 17840348 17840388 -171439166 + L1MB7 LINE L1 6132 6164 -20 1799 156 20 13 chr6 17840388 17840689 -171438865 - AluJo SINE Alu -9 303 1 228 150 0 117 chr6 17840689 17840708 -171438846 + L1MB7 LINE L1 6164 6184 0 1952 251 46 34 chr6 17840947 17841665 -171437889 + L1MC4a LINE L1 5284 6019 -102 23 33 0 0 chr6 17841870 17841900 -171437654 + AT_rich Low_complexity Low_complexity 1 30 0 1742 110 16 0 chr6 17842232 17842478 -171437076 + AluSq SINE Alu 64 313 0 2062 139 3 0 chr6 17844118 17844419 -171435135 + AluJb SINE Alu 9 310 -2 668 169 0 7 chr6 17844438 17844574 -171434980 + GA-rich Low_complexity Low_complexity 1 135 0 328 273 58 50 chr6 17846034 17846173 -171433381 + MIR SINE MIR 23 162 -100 2622 160 13 17 chr6 17846385 17846861 -171432693 + L1MB7 LINE L1 5653 6126 -58 195 100 0 0 chr6 17847573 17847603 -171431951 + (TAA)n Simple_repeat Simple_repeat 2 31 0 800 172 55 43 chr6 17848458 17848565 -171430989 - AluJo SINE Alu -77 235 131 225 0 0 0 chr6 17848565 17848590 -171430964 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2184 85 0 11 chr6 17848590 17848908 -171430646 + AluY SINE Alu 1 315 0 800 172 55 43 chr6 17848908 17848961 -171430593 - AluJo SINE Alu -180 132 71 2252 86 0 35 chr6 17851252 17851565 -171427989 + AluSx SINE Alu 1 302 -10 858 273 76 32 chr6 17851701 17852111 -171427443 + MLT1J2 LTR MaLR 1 428 -22 1075 184 0 0 chr6 17853505 17853679 -171425875 - FRAM SINE Alu -7 169 1 1805 173 0 7 chr6 17853697 17853981 -171425573 - AluJo SINE Alu -30 282 1 1845 110 7 46 chr6 17856042 17856220 -171423334 - AluSx SINE Alu -7 305 122 198 0 0 0 chr6 17856220 17856242 -171423312 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2237 74 0 11 chr6 17856242 17856527 -171423027 - AluSx SINE Alu -30 282 1 1845 110 7 46 chr6 17856527 17856629 -171422925 - AluSx SINE Alu -188 124 35 2394 230 92 70 chr6 17856638 17857525 -171422029 - L1MC4a LINE L1 -3 7805 6934 261 377 57 29 chr6 17857661 17857836 -171421718 - L2 LINE L2 -45 3227 3048 2395 107 0 0 chr6 17859260 17859570 -171419984 + AluSx SINE Alu 1 310 -2 21 57 0 0 chr6 17859687 17859722 -171419832 + AT_rich Low_complexity Low_complexity 1 35 0 617 315 25 10 chr6 17859859 17860062 -171419492 - MIR SINE MIR -50 212 7 214 304 98 11 chr6 17861409 17861501 -171418053 - MIR3 SINE MIR -21 187 88 232 162 0 0 chr6 17861767 17861804 -171417750 - L2 LINE L2 -11 3302 3266 * 241 193 121 60 chr6 17861772 17861855 -171417699 - MIR SINE MIR -10 252 165 461 70 0 14 chr6 17863214 17863285 -171416269 + (TG)n Simple_repeat Simple_repeat 1 70 0 309 333 14 14 chr6 17864294 17864435 -171415119 + L2 LINE L2 3173 3313 0 442 233 212 8 chr6 17866015 17866175 -171413379 - MIR SINE MIR -42 220 31 312 323 0 0 chr6 17866238 17866331 -171413223 - L1MC4 LINE L1 -1335 6707 6615 23 0 0 0 chr6 17866382 17866405 -171413149 + AT_rich Low_complexity Low_complexity 1 23 0 606 306 82 69 chr6 17866673 17866971 -171412583 + L1ME4a LINE L1 5426 5736 -385 1849 158 0 44 chr6 17866971 17867288 -171412266 + AluJb SINE Alu 3 305 -7 606 306 82 69 chr6 17867288 17867440 -171412114 + L1ME4a LINE L1 5736 5884 -237 306 148 0 0 chr6 17868032 17868086 -171411468 + (CA)n Simple_repeat Simple_repeat 1 54 0 336 316 52 29 chr6 17868477 17868613 -171410941 - MIR SINE MIR -4 258 120 2253 101 3 0 chr6 17868761 17869048 -171410506 + AluSc SINE Alu 5 292 -17 216 301 48 12 chr6 17869586 17869669 -171409885 + L2 LINE L2 2924 3009 -263 2179 110 7 0 chr6 17869669 17869969 -171409585 + AluSq SINE Alu 1 302 -11 364 357 36 89 chr6 17870346 17870794 -171408760 + L2 LINE L2 2849 3272 0 281 118 20 0 chr6 17870799 17870850 -171408704 + GA-rich Low_complexity Low_complexity 3 54 0 224 169 52 0 chr6 17871406 17871483 -171408071 + (TA)n Simple_repeat Simple_repeat 1 81 0 498 280 40 0 chr6 17871595 17871720 -171407834 + MIR SINE MIR 129 258 -4 1791 159 0 26 chr6 17872687 17872855 -171406699 - AluJo SINE Alu -11 301 143 1902 100 79 7 chr6 17872855 17873135 -171406419 - AluSp SINE Alu -9 304 5 1791 159 0 26 chr6 17873135 17873275 -171406279 - AluJo SINE Alu -169 143 1 198 275 175 0 chr6 17873546 17873626 -171405928 + L2 LINE L2 2942 3035 -237 283 277 100 54 chr6 17873673 17873803 -171405751 + L2 LINE L2 3137 3272 0 712 153 27 0 chr6 17874678 17874789 -171404765 - LTR12 LTR ERV1 -234 480 367 253 270 14 0 chr6 17874795 17874869 -171404685 - LTR30 LTR ERV1 -95 627 553 912 156 50 105 chr6 17874898 17875183 -171404371 - LTR12 LTR ERV1 -435 1800 55 271 211 0 0 chr6 17875183 17875235 -171404319 - LTR30 LTR ERV1 -670 52 1 732 204 22 88 chr6 17875603 17875829 -171403725 - L1ME3A LINE L1 -174 5996 5786 306 194 0 0 chr6 17875838 17875900 -171403654 + (TA)n Simple_repeat Simple_repeat 1 62 0 324 234 171 9 chr6 17876284 17876395 -171403159 - L1ME3A LINE L1 -496 5625 5528 2458 81 0 0 chr6 17876492 17876799 -171402755 - AluSc SINE Alu -2 307 1 1877 135 24 7 chr6 17878016 17878313 -171401241 - AluJo SINE Alu -10 302 1 2094 120 0 7 chr6 17879459 17879759 -171399795 - AluSx SINE Alu -14 298 1 760 165 23 28 chr6 17879992 17880168 -171399386 + L1MA7 LINE L1 6117 6291 0 322 352 56 0 chr6 17880440 17880582 -171398972 + MIR SINE MIR 30 179 -83 2281 105 0 0 chr6 17881449 17881743 -171397811 + AluSc SINE Alu 1 294 -15 2337 81 0 10 chr6 17883587 17883884 -171395670 + AluY SINE Alu 1 294 -17 2237 104 0 3 chr6 17884471 17884768 -171394786 - AluSc SINE Alu -13 296 1 185 295 98 0 chr6 17884900 17884961 -171394593 + MIR SINE MIR 84 150 -112 192 77 0 0 chr6 17884962 17884988 -171394566 + (TATAA)n Simple_repeat Simple_repeat 2 27 0 1491 195 6 35 chr6 17886228 17886546 -171393008 + AluJo SINE Alu 1 309 -3 1488 190 45 39 chr6 17886594 17886904 -171392650 - AluJo SINE Alu 0 312 1 482 260 20 41 chr6 17887290 17887436 -171392118 - MIR3 SINE MIR -9 199 57 383 295 21 74 chr6 17887777 17887864 -171391690 + MIR SINE MIR 73 146 -116 1740 145 6 68 chr6 17887864 17888188 -171391366 + AluJo SINE Alu 1 304 -8 383 295 21 74 chr6 17888188 17888290 -171391264 + MIR SINE MIR 146 252 -10 233 75 25 0 chr6 17888498 17888538 -171391016 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2306 102 0 0 chr6 17888541 17888846 -171390708 - AluY SINE Alu -6 305 1 189 0 0 0 chr6 17888886 17888907 -171390647 + (TG)n Simple_repeat Simple_repeat 2 22 0 2101 95 50 3 chr6 17888909 17889192 -171390362 - AluSq SINE Alu -17 296 1 578 253 13 27 chr6 17889208 17889358 -171390196 + MIR3 SINE MIR 57 204 -4 341 293 69 34 chr6 17892061 17892264 -171387290 + HAL1b LINE L1 71 242 -1106 270 0 0 0 chr6 17892273 17892303 -171387251 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr6 17892340 17892372 -171387182 + AT_rich Low_complexity Low_complexity 1 32 0 1466 181 7 27 chr6 17892760 17893058 -171386496 + AluJo SINE Alu 1 292 -20 457 273 151 62 chr6 17893740 17893868 -171385686 + L1MB3 LINE L1 2445 2560 -3586 2559 68 0 0 chr6 17893868 17894177 -171385377 - AluY SINE Alu -2 309 1 457 273 151 62 chr6 17894177 17894598 -171384956 + L1MB3 LINE L1 2560 3043 -3103 2241 98 3 7 chr6 17894632 17894927 -171384627 + AluSc SINE Alu 5 298 -11 2903 10 0 0 chr6 17895002 17895314 -171384240 + AluYb8 SINE Alu 1 312 -6 28 61 0 0 chr6 17895365 17895414 -171384140 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr6 17895503 17895531 -171384023 + AT_rich Low_complexity Low_complexity 1 28 0 1806 149 14 20 chr6 17895563 17895859 -171383695 + AluJo SINE Alu 1 294 -18 2085 117 0 7 chr6 17896659 17896979 -171382575 + AluSx SINE Alu 1 318 0 306 303 106 61 chr6 17897696 17897770 -171381784 + L1MB3 LINE L1 3998 4067 -2079 2149 118 3 7 chr6 17897770 17898067 -171381487 + AluSx SINE Alu 1 296 -16 306 303 106 61 chr6 17898067 17898256 -171381298 + L1MB3 LINE L1 4067 4273 -1873 2115 135 0 0 chr6 17898276 17898564 -171380990 + AluSx SINE Alu 1 288 -24 255 95 88 14 chr6 17898564 17898711 -171380843 + (TA)n Simple_repeat Simple_repeat 1 158 0 1791 155 49 18 chr6 17898819 17899148 -171380406 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr6 17899340 17899361 -171380193 + AT_rich Low_complexity Low_complexity 1 21 0 2007 56 0 12 chr6 17899556 17899805 -171379749 + AluY SINE Alu 56 301 -10 23 0 0 0 chr6 17900071 17900094 -171379460 + AT_rich Low_complexity Low_complexity 1 23 0 3019 63 6 0 chr6 17900094 17900460 -171379094 + L1PA8 LINE L1 5805 6172 0 2215 86 35 3 chr6 17900467 17900757 -171378797 + AluSx SINE Alu 1 299 -13 610 277 106 66 chr6 17900958 17901428 -171378126 + L1MB3 LINE L1 5293 5781 -340 792 221 35 87 chr6 17901733 17901781 -171377773 + MIR SINE MIR 22 71 -191 801 163 7 22 chr6 17901781 17901916 -171377638 + FLAM_A SINE Alu 1 133 0 792 221 35 87 chr6 17901916 17902121 -171377433 + MIR SINE MIR 71 262 0 183 42 0 0 chr6 17902255 17902279 -171377275 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 0 0 0 chr6 17902281 17902320 -171377234 + (CA)n Simple_repeat Simple_repeat 2 40 0 248 228 10 50 chr6 17902383 17902484 -171377070 - L1ME LINE L1 -385 5736 5640 2086 92 41 10 chr6 17903458 17903750 -171375804 + AluSx SINE Alu 1 301 -11 511 303 17 28 chr6 17903849 17904027 -171375527 + MIR SINE MIR 2 177 -85 248 289 180 39 chr6 17904074 17904331 -171375223 - L2 LINE L2 -25 3288 2884 221 160 0 20 chr6 17904364 17904414 -171375140 + (TGG)n Simple_repeat Simple_repeat 1 49 0 745 311 36 45 chr6 17904933 17905354 -171374200 - L1ME3A LINE L1 -226 5944 5528 246 154 339 0 chr6 17905827 17905892 -171373662 + L1MB7 LINE L1 6091 6177 -7 1450 172 43 36 chr6 17905904 17906087 -171373467 + L1MB3 LINE L1 5871 6058 -125 2258 125 0 0 chr6 17906087 17906391 -171373163 + AluSq SINE Alu 1 304 -9 1450 172 43 36 chr6 17906391 17906510 -171373044 + L1MB3 LINE L1 6058 6175 -8 350 294 0 0 chr6 17907588 17907673 -171371881 - L2 LINE L2 0 3272 3188 406 323 24 8 chr6 17908055 17908179 -171371375 + L2 LINE L2 3134 3259 -13 2138 112 0 31 chr6 17908293 17908614 -171370940 - AluSx SINE Alu -1 311 1 2023 194 18 26 chr6 17908663 17909054 -171370500 + MLT1B LTR MaLR 1 388 -2 303 251 150 70 chr6 17909111 17909298 -171370256 + MIR3 SINE MIR 3 204 -4 2312 102 0 0 chr6 17909465 17909769 -171369785 + AluSg SINE Alu 1 304 -6 6061 96 8 13 chr6 17910481 17911337 -171368217 - L1PA14 LINE L1 -3 6158 5307 1817 109 4 16 chr6 17911363 17911620 -171367934 - AluSg SINE Alu -29 281 28 21 0 0 0 chr6 17911630 17911651 -171367903 + AT_rich Low_complexity Low_complexity 1 21 0 2363 88 0 3 chr6 17911652 17911949 -171367605 + AluSq SINE Alu 1 296 -17 406 300 198 12 chr6 17913068 17913283 -171366271 - MIR SINE MIR 0 262 12 266 306 50 78 chr6 17913913 17914132 -171365422 + MIR SINE MIR 12 224 -38 1867 116 83 7 chr6 17914767 17915043 -171364511 + AluSp SINE Alu 14 310 -3 192 40 0 0 chr6 17915312 17915337 -171364217 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 455 188 69 10 chr6 17916325 17916426 -171363128 + MIR SINE MIR 82 188 -74 1467 174 105 22 chr6 17916432 17916794 -171362760 - L1MB7 LINE L1 0 6184 5793 3504 102 16 8 chr6 17916988 17917488 -171362066 + MER1A DNA MER1_type 1 529 0 443 267 34 48 chr6 17918185 17918331 -171361223 - MIR3 SINE MIR -15 193 50 5635 49 1 0 chr6 17918874 17919560 -171359994 + L1PA5 LINE L1 5501 6154 0 482 207 10 173 chr6 17920081 17920181 -171359373 - MER69A DNA AcHobo -2349 177 127 1829 163 3 7 chr6 17920181 17920487 -171359067 + AluJb SINE Alu 1 305 -7 482 207 10 173 chr6 17920487 17920594 -171358960 - MER69A DNA AcHobo -2399 127 4 258 231 0 0 chr6 17920946 17920998 -171358556 + LTR30 LTR ERV1 1 52 -670 1320 126 112 5 chr6 17920998 17921212 -171358342 + LTR12 LTR ERV1 53 289 -425 323 174 35 23 chr6 17921212 17921298 -171358256 + LTR30 LTR ERV1 556 642 -80 732 129 0 0 chr6 17921300 17921401 -171358153 + LTR12 LTR ERV1 614 714 0 1772 91 4 4 chr6 17921401 17921632 -171357922 - AluSp SINE Alu -82 231 1 14958 118 42 21 chr6 17922029 17922420 -171357134 + Tigger1 DNA MER2_type 1 382 -2036 2426 86 0 0 chr6 17922420 17922723 -171356831 + AluY SINE Alu 1 303 -8 14958 118 42 21 chr6 17922723 17924124 -171355430 + Tigger1 DNA MER2_type 382 1860 -558 2072 93 3 31 chr6 17924124 17924442 -171355112 + AluY SINE Alu 1 310 0 14958 118 42 21 chr6 17924442 17925005 -171354549 + Tigger1 DNA MER2_type 1860 2409 -9 1980 97 68 4 chr6 17925008 17925287 -171354267 + AluSq SINE Alu 3 299 -14 2082 134 7 3 chr6 17925365 17925672 -171353882 + AluJb SINE Alu 1 308 -4 1647 117 50 39 chr6 17926011 17926260 -171353294 + L1MB4 LINE L1 5884 6138 -42 2336 73 24 0 chr6 17926260 17926549 -171353005 + AluSc SINE Alu 1 296 -13 1647 117 50 39 chr6 17926549 17926580 -171352974 + L1MB4 LINE L1 6138 6167 -13 216 0 0 0 chr6 17926582 17926606 -171352948 + (TG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr6 17926618 17926652 -171352902 + AT_rich Low_complexity Low_complexity 1 34 0 1372 208 10 20 chr6 17927956 17928254 -171351300 + AluJo SINE Alu 1 295 -17 186 263 53 0 chr6 17928312 17928369 -171351185 + L2 LINE L2 2715 2774 -540 251 284 156 0 chr6 17928384 17928493 -171351061 + MIR SINE MIR 124 249 -13 222 319 83 58 chr6 17928534 17928810 -171350744 + L2 LINE L2 2825 3107 -165 219 36 0 0 chr6 17929003 17929031 -171350523 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2183 104 3 0 chr6 17929033 17929320 -171350234 - AluSg SINE Alu -22 288 1 567 291 27 0 chr6 17929324 17929472 -171350082 - MIR SINE MIR -110 152 1 1282 160 88 0 chr6 17929566 17929804 -171349750 + L1MA9 LINE L1 6054 6312 0 2192 102 3 0 chr6 17929812 17930119 -171349435 + AluSq SINE Alu 1 308 0 185 154 26 0 chr6 17930961 17931000 -171348554 + (TA)n Simple_repeat Simple_repeat 1 40 0 676 250 103 0 chr6 17931959 17932115 -171347439 - AluJb SINE Alu -4 308 137 2424 152 0 46 chr6 17932601 17933016 -171346538 + MER57A LTR ERV1 8 403 0 200 383 25 0 chr6 17933130 17933250 -171346304 - L2 LINE L2 -642 2672 2550 2221 108 0 3 chr6 17933281 17933576 -171345978 + AluSg SINE Alu 1 294 -16 376 234 126 51 chr6 17935959 17936134 -171343420 - MER5A DNA MER1_type -1 188 1 2244 116 7 3 chr6 17936282 17936585 -171342969 + AluSc SINE Alu 1 304 -5 1194 137 0 6 chr6 17937257 17937432 -171342122 + AluJo SINE Alu 1 174 -138 309 136 0 68 chr6 17937651 17937752 -171341802 + AluJ/FRAM SINE Alu 228 324 0 2366 96 0 7 chr6 17937826 17938129 -171341425 + AluSc SINE Alu 1 301 -8 2250 145 8 39 chr6 17938722 17939000 -171340554 - MER7A DNA MER2_type -2693 345 81 2514 62 0 13 chr6 17939000 17939305 -171340249 - AluY SINE Alu -10 301 1 2250 145 8 39 chr6 17939305 17939384 -171340170 - MER7A DNA MER2_type -2957 81 1 197 341 93 31 chr6 17941540 17941669 -171337885 - MIR3 SINE MIR -25 183 47 2335 115 0 0 chr6 17942851 17943155 -171336399 - AluSg SINE Alu -6 304 1 249 255 117 0 chr6 17943157 17943251 -171336303 + L1 LINE L1 4887 4991 -1155 250 219 14 14 chr6 17943251 17943324 -171336230 + (TA)n Simple_repeat Simple_repeat 1 73 0 539 294 55 12 chr6 17943358 17943521 -171336033 - L2 LINE L2 -503 2811 2642 1329 242 88 53 chr6 17943529 17944053 -171335501 + MLT1F LTR MaLR 1 542 0 504 301 38 0 chr6 17944095 17944228 -171335326 - MIR SINE MIR -122 140 3 2370 100 0 3 chr6 17944351 17944652 -171334902 - AluSq SINE Alu -13 300 1 2318 90 13 0 chr6 17944988 17945287 -171334267 - AluSq SINE Alu -10 303 1 943 178 0 0 chr6 17945657 17945847 -171333707 - FRAM SINE Alu 0 190 1 263 73 24 0 chr6 17946749 17946790 -171332764 + Charlie1 DNA MER1_type 2687 2728 -33 2646 169 79 16 chr6 17946793 17947428 -171332126 - Charlie1 DNA MER1_type -32 2729 2055 723 195 69 25 chr6 17947405 17947564 -171331990 - Charlie1 DNA MER1_type -2555 206 41 * 3893 135 20 0 chr6 17947871 17948516 -171331038 - L1MA4 LINE L1 -1 6299 5642 1977 146 17 0 chr6 17948521 17948822 -171330732 - AluSc SINE Alu -3 306 1 288 346 15 15 chr6 17949088 17949218 -171330336 - MIR SINE MIR -49 213 84 1607 40 30 0 chr6 17950218 17950418 -171329136 - L1PA4 LINE L1 0 6155 5950 473 119 48 24 chr6 17950787 17950923 -171328631 - FLAM_A SINE Alu 0 142 35 1103 91 0 0 chr6 17951690 17951844 -171327710 - L1PA8 LINE L1 0 6172 6019 184 362 21 0 chr6 17953259 17953306 -171326248 - L2 LINE L2 -98 3174 3127 198 103 0 0 chr6 17953314 17953343 -171326211 + (T)n Simple_repeat Simple_repeat 1 29 0 191 138 0 0 chr6 17953532 17953561 -171325993 - L2 LINE L2 -16 3297 3269 350 269 71 43 chr6 17953999 17954140 -171325414 + MER5A DNA MER1_type 1 145 -44 1758 198 68 60 chr6 17954448 17954756 -171324798 + MLT1D LTR MaLR 1 316 -189 1931 131 22 26 chr6 17954756 17955069 -171324485 + AluSx SINE Alu 1 312 0 1758 198 68 60 chr6 17955069 17955261 -171324293 + MLT1D LTR MaLR 316 505 0 460 171 0 34 chr6 17955549 17955637 -171323917 - MER20 DNA MER1_type 0 219 135 207 0 0 0 chr6 17955667 17955690 -171323864 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 769 189 0 0 chr6 17955702 17955834 -171323720 - FRAM SINE Alu -44 132 1 758 153 13 33 chr6 17955836 17955986 -171323568 - MER20 DNA MER1_type -72 147 1 2256 83 3 52 chr6 17956351 17956675 -171322879 - AluSg SINE Alu -2 308 1 2163 125 0 25 chr6 17957617 17957936 -171321618 + AluSx SINE Alu 1 311 -1 314 184 276 0 chr6 17958517 17958615 -171320939 - L2 LINE L2 -21 3292 3168 201 371 121 17 chr6 17959070 17959186 -171320368 - L2 LINE L2 -24 3248 3121 2314 90 3 3 chr6 17960772 17961072 -171318482 + AluSq SINE Alu 1 300 -13 1122 143 0 0 chr6 17961089 17961431 -171318123 + (TGGA)n Simple_repeat Simple_repeat 1 342 0 243 262 16 0 chr6 17961438 17961499 -171318055 + GA-rich Low_complexity Low_complexity 3 64 0 26 50 0 0 chr6 17961957 17961997 -171317557 + AT_rich Low_complexity Low_complexity 1 40 0 2375 92 0 0 chr6 17964222 17964515 -171315039 - AluSx SINE Alu -19 293 1 271 78 7 0 chr6 17966490 17966546 -171313008 - Alu SINE Alu -28 274 240 331 252 209 0 chr6 17966561 17966676 -171312878 - MIR3 SINE MIR -46 162 24 306 125 0 0 chr6 17967039 17967087 -171312467 + (CA)n Simple_repeat Simple_repeat 2 49 0 192 200 22 22 chr6 17968819 17968864 -171310690 - L2 LINE L2 -11 3261 3217 342 0 0 0 chr6 17969676 17969714 -171309840 + (CA)n Simple_repeat Simple_repeat 2 39 0 338 245 14 14 chr6 17970948 17971091 -171308463 + (TG)n Simple_repeat Simple_repeat 2 144 0 32 0 0 0 chr6 17971299 17971331 -171308223 + AT_rich Low_complexity Low_complexity 1 32 0 1007 169 12 0 chr6 17971339 17971511 -171308043 - AluJo SINE Alu -19 293 120 640 120 0 0 chr6 17971530 17971630 -171307924 - FLAM_C SINE Alu 0 143 44 1140 169 14 59 chr6 17971637 17971927 -171307627 - L1MA7 LINE L1 -3 6288 6012 486 212 159 0 chr6 17972111 17972224 -171307330 - FLAM_A SINE Alu -2 131 1 300 279 39 54 chr6 17972666 17972795 -171306759 - MIR3 SINE MIR -4 204 78 356 284 61 20 chr6 17973210 17973358 -171306196 + L2 LINE L2 3160 3313 0 870 192 106 10 chr6 17973782 17973980 -171305574 + MLT1A1 LTR MaLR 1 217 -148 2125 78 30 0 chr6 17974000 17974270 -171305284 + AluSx SINE Alu 1 278 -34 21 0 0 0 chr6 17974626 17974647 -171304907 + AT_rich Low_complexity Low_complexity 1 21 0 384 253 165 29 chr6 17974722 17974892 -171304662 - MIR SINE MIR -38 224 32 671 183 82 105 chr6 17974989 17975208 -171304346 + MIR SINE MIR 5 218 -44 379 276 0 38 chr6 17975258 17975363 -171304191 + MIR SINE MIR 48 148 -114 1546 101 4 21 chr6 17976258 17976495 -171303059 - AluSc SINE Alu -1 308 76 736 301 30 33 chr6 17976679 17976981 -171302573 - L3 LINE CR1 -14 1563 1263 1096 168 20 45 chr6 17977780 17977982 -171301572 + AluJo SINE Alu 86 282 -30 258 32 0 0 chr6 17977997 17978028 -171301526 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 17980669 17980689 -171298865 + (A)n Simple_repeat Simple_repeat 1 20 0 425 351 46 6 chr6 17980724 17980898 -171298656 + MIR3 SINE MIR 19 199 -9 223 319 100 62 chr6 17983303 17983440 -171296114 + MIR3 SINE MIR 43 188 -20 10840 30 7 0 chr6 17983440 17985509 -171294045 + L1PA4 LINE L1 4077 6152 -3 223 319 100 62 chr6 17985509 17985531 -171294023 + MIR3 SINE MIR 188 208 0 334 100 0 0 chr6 17985706 17985756 -171293798 + L1MB3 LINE L1 6093 6142 -41 2155 116 3 0 chr6 17985756 17986049 -171293505 + AluSq SINE Alu 1 294 -19 261 321 28 0 chr6 17986989 17987095 -171292459 + MIR3 SINE MIR 96 204 -4 282 360 0 9 chr6 17987668 17987782 -171291772 + L2 LINE L2 3137 3249 -23 267 303 50 81 chr6 17987802 17988099 -171291455 + L2 LINE L2 2596 2883 -431 284 340 50 10 chr6 17988304 17988404 -171291150 + L2 LINE L2 3209 3312 -1 202 194 0 0 chr6 17988409 17988445 -171291109 + GA-rich Low_complexity Low_complexity 1 36 0 2169 123 3 7 chr6 17988461 17988770 -171290784 + AluSg SINE Alu 1 308 -2 220 275 213 0 chr6 17988774 17988854 -171290700 - MIR SINE MIR -77 131 35 182 364 114 0 chr6 17988979 17989067 -171290487 + L2 LINE L2 2260 2357 -957 303 271 175 22 chr6 17989362 17989591 -171289963 + L2 LINE L2 2451 2714 -600 195 42 0 0 chr6 17989919 17989943 -171289611 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 530 343 70 18 chr6 17989978 17990377 -171289177 + L1M4 LINE L1 2121 2540 -3606 357 271 60 0 chr6 17990588 17990721 -171288833 + L1ME2 LINE L1 2329 2469 -3677 2295 125 0 0 chr6 17990767 17991078 -171288476 + AluSx SINE Alu 1 311 -1 719 228 74 43 chr6 17991069 17991463 -171288091 + L1ME2 LINE L1 3106 3511 -2635 447 170 33 68 chr6 17991450 17991595 -171287959 + L1MD2 LINE L1 6035 6160 -6 * 1474 246 50 47 chr6 17991578 17992179 -171287375 + L1ME2 LINE L1 3479 4081 -2065 723 268 103 29 chr6 17992191 17992571 -171286983 + L1ME2 LINE L1 4346 4753 -1393 23 55 0 18 chr6 17992576 17992610 -171286944 + AT_rich Low_complexity Low_complexity 1 35 -19 2064 143 0 0 chr6 17992610 17992911 -171286643 - AluJo SINE Alu -11 301 1 23 55 0 18 chr6 17992911 17992931 -171286623 + AT_rich Low_complexity Low_complexity 35 54 0 779 180 50 0 chr6 17992931 17993070 -171286484 - FRAM SINE Alu -30 146 1 1216 241 127 6 chr6 17993084 17993556 -171285998 + L1ME2 LINE L1 4757 5285 -861 228 182 0 0 chr6 17993556 17993600 -171285954 + (TA)n Simple_repeat Simple_repeat 1 44 0 1423 169 12 12 chr6 17993651 17993899 -171285655 - AluJb SINE Alu -22 290 43 1446 216 29 10 chr6 17993919 17994229 -171285325 + L1ME2 LINE L1 5825 6140 -24 871 194 0 6 chr6 17995697 17995857 -171283697 + MER5A DNA MER1_type 9 167 -22 1988 131 27 0 chr6 17995899 17996197 -171283357 + AluSx SINE Alu 1 306 -6 392 0 21 0 chr6 17996198 17996246 -171283308 + (CA)n Simple_repeat Simple_repeat 1 49 0 32 0 0 0 chr6 17996800 17996832 -171282722 + AT_rich Low_complexity Low_complexity 1 32 0 389 270 63 59 chr6 17997227 17997417 -171282137 - MIR SINE MIR -19 243 50 276 281 177 0 chr6 17998201 17998297 -171281257 + L2 LINE L2 3160 3272 0 429 275 25 17 chr6 17998454 17998574 -171280980 + MIR SINE MIR 32 152 -56 974 221 37 28 chr6 17998645 17998862 -171280692 - MER58A DNA MER1_type -5 219 1 283 235 173 12 chr6 18001037 18001118 -171278436 + L2 LINE L2 3214 3307 -6 1104 206 76 25 chr6 18001720 18002036 -171277518 + MLT1C LTR MaLR 134 465 -2 603 261 79 120 chr6 18002095 18002513 -171277041 + L2 LINE L2 2913 3313 0 194 273 23 0 chr6 18002768 18002812 -171276742 + MIR SINE MIR 77 121 -87 192 294 92 28 chr6 18002882 18002991 -171276563 - L2 LINE L2 -7 3306 3191 1846 165 0 10 chr6 18003363 18003666 -171275888 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr6 18005318 18005343 -171274211 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 18005707 18005731 -171273823 + AT_rich Low_complexity Low_complexity 1 24 0 2263 100 3 3 chr6 18008118 18008417 -171271137 + AluSx SINE Alu 1 299 -13 2050 103 41 17 chr6 18008602 18008894 -171270660 + AluSq SINE Alu 1 299 -14 342 291 58 53 chr6 18009991 18010180 -171269374 - MIR3 SINE MIR -14 194 5 460 244 207 0 chr6 18010659 18010794 -171268760 - MIR SINE MIR -48 214 52 186 296 136 25 chr6 18011170 18011251 -171268303 - MIR3 SINE MIR -117 91 2 294 132 38 38 chr6 18011884 18011937 -171267617 + MIR SINE MIR 205 257 -5 1931 136 14 14 chr6 18012020 18012314 -171267240 + AluSx SINE Alu 1 294 -18 267 114 0 0 chr6 18012503 18012547 -171267007 + (TA)n Simple_repeat Simple_repeat 1 44 0 211 366 70 21 chr6 18012781 18012923 -171266631 - MIR3 SINE MIR -56 152 4 345 47 0 0 chr6 18013459 18013502 -171266052 + (T)n Simple_repeat Simple_repeat 1 43 0 2176 130 0 0 chr6 18014307 18014608 -171264946 + AluSx SINE Alu 1 301 -11 1757 159 7 17 chr6 18015297 18015598 -171263956 + AluJo SINE Alu 1 298 -14 1962 119 69 0 chr6 18015600 18015877 -171263677 + AluSp SINE Alu 1 296 -17 836 134 0 19 chr6 18015883 18016121 -171263433 + AluSx SINE Alu 2 289 -21 214 277 31 0 chr6 18016411 18016476 -171263078 + GA-rich Low_complexity Low_complexity 3 69 0 1884 139 51 0 chr6 18016536 18016810 -171262744 - AluSx SINE Alu -24 288 1 210 176 14 40 chr6 18016960 18017034 -171262520 + T-rich Low_complexity Low_complexity 2 73 0 730 225 182 10 chr6 18017092 18017301 -171262253 + MIR SINE MIR 2 246 -16 630 110 0 0 chr6 18017773 18017855 -171261699 + AluSg/x SINE Alu 217 298 -14 21 0 0 0 chr6 18021184 18021205 -171258349 + AT_rich Low_complexity Low_complexity 1 21 0 875 158 0 0 chr6 18022715 18022848 -171256706 - FLAM_C SINE Alu 0 133 1 210 325 65 32 chr6 18023066 18023189 -171256365 + MIR SINE MIR 21 147 -61 318 360 64 37 chr6 18025655 18026131 -171253423 - L2 LINE L2 -162 3110 2624 332 292 168 30 chr6 18027034 18027236 -171252318 + L1ME LINE L1 5354 5583 -776 357 293 64 21 chr6 18027290 18027430 -171252124 + L1ME LINE L1 5677 5822 -299 327 25 0 0 chr6 18027949 18027989 -171251565 + (TG)n Simple_repeat Simple_repeat 2 41 0 531 267 39 37 chr6 18028041 18028228 -171251326 - MIR SINE MIR -62 146 3 528 284 53 12 chr6 18028877 18029046 -171250508 - MIR3 SINE MIR -3 205 30 185 250 0 0 chr6 18030390 18030430 -171249124 + L2 LINE L2 3179 3218 -95 746 236 5 1 chr6 18030436 18030608 -171248946 + MIR SINE MIR 24 198 -62 213 313 42 21 chr6 18031826 18031922 -171247632 + L2 LINE L2 2205 2302 -1012 2312 122 0 0 chr6 18032968 18033280 -171246274 - AluSx SINE Alu 0 312 1 603 306 54 27 chr6 18033861 18034083 -171245471 - MIR SINE MIR -28 234 7 310 290 149 26 chr6 18034327 18034482 -171245072 - MER5B DNA MER1_type 0 189 2 288 120 0 0 chr6 18035997 18036047 -171243507 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr6 18036223 18036244 -171243310 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 18038152 18038185 -171241369 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr6 18041546 18041574 -171237980 + (T)n Simple_repeat Simple_repeat 1 28 0 183 42 0 0 chr6 18041714 18041738 -171237816 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 228 246 0 0 chr6 18041994 18042051 -171237503 + (CA)n Simple_repeat Simple_repeat 1 57 0 388 291 163 90 chr6 18042117 18043052 -171236502 + L1M2 LINE L1 308 1310 -5539 309 51 0 0 chr6 18043066 18043105 -171236449 + (CA)n Simple_repeat Simple_repeat 2 40 0 335 105 18 0 chr6 18043491 18043548 -171236006 + (TCC)n Simple_repeat Simple_repeat 1 58 0 192 149 0 0 chr6 18043563 18043610 -171235944 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 18043750 18043774 -171235780 + GC_rich Low_complexity Low_complexity 1 24 0 406 310 168 0 chr6 18046366 18046521 -171233033 + MER5A DNA MER1_type 9 189 0 24 32 0 0 chr6 18047592 18047623 -171231931 + AT_rich Low_complexity Low_complexity 1 31 0 641 141 23 174 chr6 18048611 18048898 -171230656 + Charlie5 DNA MER1_type 23 352 -2233 1752 138 62 17 chr6 18048898 18049188 -171230366 - AluJb SINE Alu -9 303 1 641 141 23 174 chr6 18049188 18049277 -171230277 + Charlie5 DNA MER1_type 352 2585 0 1015 16 132 0 chr6 18050921 18051042 -171228512 - MER85 DNA T2_type -2 137 1 2162 192 44 26 chr6 18052367 18052826 -171226728 + MLT1C LTR MaLR 1 467 0 1588 231 121 19 chr6 18053495 18054319 -171225235 + L2 LINE L2 2403 3313 0 322 298 38 53 chr6 18054518 18054649 -171224905 - MIR SINE MIR -54 208 80 189 171 0 0 chr6 18055331 18055366 -171224188 + A-rich Low_complexity Low_complexity 1 35 0 567 254 45 57 chr6 18056199 18056376 -171223178 - MIR3 SINE MIR -19 189 15 1823 162 0 10 chr6 18057141 18057449 -171222105 - AluJo SINE Alu -7 305 1 676 48 0 0 chr6 18057556 18057639 -171221915 - L1P LINE L1 -2342 3804 3722 3271 24 27 0 chr6 18057639 18058006 -171221548 + L1PA4 LINE L1 5773 6151 -4 762 237 56 56 chr6 18058996 18059283 -171220271 + L1ME3A LINE L1 5817 6103 -67 2126 112 11 0 chr6 18059316 18059602 -171219952 + AluSx SINE Alu 1 289 -23 1045 254 116 19 chr6 18059696 18060034 -171219520 + L1ME3A LINE L1 5510 5897 -273 2200 130 0 0 chr6 18060034 18060341 -171219213 + AluSq SINE Alu 1 307 -6 1045 254 116 19 chr6 18060341 18060415 -171219139 + L1ME3A LINE L1 5897 5962 -208 1794 160 0 11 chr6 18060450 18060731 -171218823 - AluJo SINE Alu -34 278 1 378 237 23 53 chr6 18060732 18060863 -171218691 + L1ME3A LINE L1 6044 6170 0 21 0 0 0 chr6 18060973 18060994 -171218560 + AT_rich Low_complexity Low_complexity 1 21 0 273 248 174 9 chr6 18061726 18061835 -171217719 + L2 LINE L2 3186 3312 -1 1367 191 67 24 chr6 18061894 18062057 -171217497 - AluJo SINE Alu -1 311 157 213 39 0 0 chr6 18062057 18062083 -171217471 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2131 103 0 7 chr6 18062085 18062367 -171217187 - AluSx SINE Alu -32 280 1 1367 191 67 24 chr6 18062367 18062498 -171217056 - AluJo SINE Alu -155 157 1 250 306 50 50 chr6 18062677 18062843 -171216711 - MIR SINE MIR -49 213 51 504 217 167 0 chr6 18063358 18063496 -171216058 + MER5A DNA MER1_type 28 188 -1 237 139 0 0 chr6 18065137 18065180 -171214374 + (CA)n Simple_repeat Simple_repeat 2 44 0 1221 218 12 112 chr6 18066025 18066437 -171213117 + MLT1B LTR MaLR 6 376 -14 838 211 6 6 chr6 18066451 18066612 -171212942 + MLT1C LTR MaLR 307 467 0 5997 80 0 0 chr6 18066760 18067527 -171212027 + L1PA14 LINE L1 5395 6161 0 1606 194 3 3 chr6 18068280 18068594 -171210960 + AluJb SINE Alu 1 314 0 262 320 29 19 chr6 18068614 18068717 -171210837 - L2 LINE L2 -179 3093 2990 381 370 46 0 chr6 18068890 18069063 -171210491 - L2 LINE L2 -541 2773 2593 1706 180 31 63 chr6 18069105 18069488 -171210066 + MLT1A2 LTR MaLR 4 374 0 490 326 144 13 chr6 18069623 18070159 -171209395 - L2 LINE L2 -1216 2098 1493 3045 132 7 2 chr6 18070168 18070594 -171208960 - MSTA LTR MaLR 0 428 1 9793 150 39 6 chr6 18070600 18072192 -171207362 - MSTA-int LTR MaLR -7 1644 1 3001 124 19 0 chr6 18072192 18072612 -171206942 - MSTA LTR MaLR 0 428 1 441 345 120 34 chr6 18072615 18073290 -171206264 - L2 LINE L2 -1852 1462 730 407 187 44 0 chr6 18073311 18073402 -171206152 + L1MD1 LINE L1 21 115 -6425 278 152 0 13 chr6 18073408 18073487 -171206067 + (TA)n Simple_repeat Simple_repeat 2 79 0 2189 252 62 20 chr6 18073487 18073646 -171205908 + L1MD1 LINE L1 111 262 -6278 216 0 0 0 chr6 18073646 18073670 -171205884 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2189 252 62 20 chr6 18073670 18074210 -171205344 + L1MD1 LINE L1 262 1010 -5530 1412 170 0 5 chr6 18074281 18074499 -171205055 - Tigger3(Golem) DNA MER2_type -2812 217 1 330 104 0 0 chr6 18074499 18074547 -171205007 + L1MA9 LINE L1 6265 6312 0 1334 214 76 3 chr6 18074589 18074892 -171204662 - MLT1C LTR MaLR -90 377 53 6123 198 98 17 chr6 18074899 18076538 -171203016 + L1MD1 LINE L1 1095 2601 -3939 2230 125 0 0 chr6 18076538 18076842 -171202712 + AluSx SINE Alu 1 304 -8 6123 198 98 17 chr6 18076842 18078149 -171201405 + L1MD1 LINE L1 2601 4267 -2273 5164 180 47 20 chr6 18078152 18078601 -171200953 + L1MD1 LINE L1 5211 5646 -990 1995 118 66 0 chr6 18078601 18078890 -171200664 + AluSg SINE Alu 1 308 -2 5164 180 47 20 chr6 18078890 18079811 -171199743 + L1MD1 LINE L1 5646 6636 0 286 264 57 43 chr6 18080655 18080703 -171198851 + MIR3 SINE MIR 64 110 -98 2494 72 0 3 chr6 18080703 18081008 -171198546 - AluSg SINE Alu -6 304 1 286 264 57 43 chr6 18081008 18081099 -171198455 + MIR3 SINE MIR 110 205 -3 231 170 0 0 chr6 18081336 18081383 -171198171 + T-rich Low_complexity Low_complexity 3 49 0 180 0 0 0 chr6 18084077 18084097 -171195457 + (TC)n Simple_repeat Simple_repeat 2 21 0 196 336 59 8 chr6 18086491 18086610 -171192944 + L2 LINE L2 2933 3057 -215 624 289 31 21 chr6 18086845 18087085 -171192469 - MIR SINE MIR -6 256 7 185 165 215 89 chr6 18087085 18087164 -171192390 - MER5B DNA MER1_type -3 175 87 221 305 137 0 chr6 18087171 18087266 -171192288 + L2 LINE L2 3199 3306 -7 606 245 5 58 chr6 18087291 18087479 -171192075 - MER5B DNA MER1_type 0 178 1 398 217 0 24 chr6 18087479 18087562 -171191992 - MER5B DNA MER1_type -97 81 1 738 246 60 32 chr6 18088392 18088612 -171190942 - MIR SINE MIR 0 262 38 227 358 77 57 chr6 18089055 18089497 -171190057 + L2 LINE L2 2851 3301 -12 1896 113 3 48 chr6 18089511 18089866 -171189688 - AluSx SINE Alu 0 346 5 269 164 16 33 chr6 18089975 18090036 -171189518 + LTR33 LTR ERVL 462 521 0 1492 236 33 28 chr6 18090646 18091069 -171188485 - MLT1C LTR MaLR -42 425 1 2365 195 32 24 chr6 18091651 18092300 -171187254 - L1MCa LINE L1 -4601 2144 1310 2223 183 47 14 chr6 18092304 18092791 -171186763 - L1MCa LINE L1 -4849 1196 694 285 276 11 23 chr6 18092758 18092845 -171186709 - L1MCa LINE L1 -6320 244 159 * 306 259 159 41 chr6 18092863 18093083 -171186471 - L1ME4a LINE L1 -29 6092 5847 755 262 28 33 chr6 18093183 18093397 -171186157 + MIR SINE MIR 6 218 -44 344 357 89 24 chr6 18094219 18094510 -171185044 + L2 LINE L2 2429 2738 -576 3486 114 0 6 chr6 18094852 18095344 -171184210 + LOR1a LTR ERV1 9 497 0 192 304 196 9 chr6 18095344 18095456 -171184098 + L2 LINE L2 3137 3269 -3 361 281 10 10 chr6 18095705 18095801 -171183753 - MIR3 SINE MIR -24 184 89 212 130 0 56 chr6 18095960 18096014 -171183540 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 562 200 130 0 chr6 18096520 18096620 -171182934 - AluJo/FRAM SINE Alu -63 249 137 1798 170 20 0 chr6 18096621 18096915 -171182639 - AluJo SINE Alu -8 304 5 26 30 0 0 chr6 18097345 18097378 -171182176 + AT_rich Low_complexity Low_complexity 1 33 0 2026 143 0 0 chr6 18097382 18097662 -171181892 - AluSx SINE Alu -30 282 3 2446 57 23 10 chr6 18097684 18097985 -171181569 - AluY SINE Alu -6 305 1 458 49 0 33 chr6 18098741 18098796 -171180758 + AluY SINE Alu 2 55 -258 1483 84 0 0 chr6 18098796 18098975 -171180579 + AluSg/x SINE Alu 98 276 -36 207 0 0 0 chr6 18098982 18099005 -171180549 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 294 29 0 0 chr6 18099239 18099274 -171180280 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 27 0 0 0 chr6 18099681 18099708 -171179846 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr6 18100245 18100296 -171179258 + AT_rich Low_complexity Low_complexity 1 51 0 188 302 19 0 chr6 18100431 18100484 -171179070 - MIR SINE MIR -14 248 195 336 121 3 0 chr6 18100491 18100546 -171179008 - AluJ/FLAM SINE Alu -243 59 14 2167 106 17 0 chr6 18100611 18100904 -171178650 + AluSg SINE Alu 1 298 -12 657 86 108 0 chr6 18102109 18102202 -171177352 + AluJ SINE Alu 23 125 -187 5303 70 44 3 chr6 18102204 18102880 -171176674 - L1PA8 LINE L1 0 6172 5469 2005 93 0 0 chr6 18102882 18103160 -171176394 - L1PA8 LINE L1 -771 5375 5098 908 139 85 12 chr6 18103236 18103401 -171176153 + AluJ SINE Alu 122 298 -14 190 266 38 38 chr6 18103658 18103737 -171175817 - L2 LINE L2 0 3272 3194 195 182 18 73 chr6 18104738 18104793 -171174761 - L3 LINE CR1 -5 1572 1521 246 342 26 17 chr6 18104954 18105071 -171174483 - MIR SINE MIR -109 153 36 551 244 101 12 chr6 18105435 18105603 -171173951 - MIR SINE MIR 0 262 80 331 319 43 0 chr6 18106061 18106155 -171173399 - L2 LINE L2 -25 3247 3150 1241 172 89 0 chr6 18106159 18106362 -171173192 + MER58A DNA MER1_type 4 224 0 766 261 111 4 chr6 18106471 18106705 -171172849 - MIR SINE MIR -2 260 2 2194 106 7 3 chr6 18108497 18108790 -171170764 + AluSc SINE Alu 1 294 -15 327 172 17 0 chr6 18109111 18109169 -171170385 + MER91B DNA MER1_type 2 60 -130 16067 123 36 1 chr6 18109879 18110772 -171168782 - Tigger1 DNA MER2_type -1 2417 1557 1753 179 0 13 chr6 18110772 18111074 -171168480 - AluJo SINE Alu -14 298 1 16067 123 36 1 chr6 18111074 18112512 -171167042 - Tigger1 DNA MER2_type -861 1557 3 243 259 0 0 chr6 18112618 18112672 -171166882 + T-rich Low_complexity Low_complexity 1 54 0 227 229 13 106 chr6 18112700 18112865 -171166689 - MIR3 SINE MIR -23 185 65 221 167 24 0 chr6 18112865 18112907 -171166647 + MER5B DNA MER1_type 1 43 -135 302 309 49 37 chr6 18112935 18113097 -171166457 + MER5A DNA MER1_type 8 171 -18 * 713 159 37 37 chr6 18112965 18113128 -171166426 - MER5A DNA MER1_type -24 165 3 2406 90 0 0 chr6 18113462 18113762 -171165792 - AluY SINE Alu -11 300 1 317 349 112 0 chr6 18113987 18114139 -171165415 - L2 LINE L2 -1 3271 3103 297 257 59 22 chr6 18115736 18115872 -171163682 + L3b LINE CR1 1122 1262 -321 1193 206 19 43 chr6 18115887 18115909 -171163645 - MER33 DNA MER1_type -2268 317 296 2346 103 0 0 chr6 18115909 18116209 -171163345 + AluSq SINE Alu 1 300 -13 1193 206 19 43 chr6 18116209 18116511 -171163043 - MER33 DNA MER1_type -2289 296 1 512 217 0 9 chr6 18116633 18116739 -171162815 - MER5B DNA MER1_type -73 105 1 193 209 0 0 chr6 18116745 18116788 -171162766 + L3b LINE CR1 1371 1413 -170 238 213 33 16 chr6 18116828 18116889 -171162665 - MIR3 SINE MIR -21 187 126 219 36 0 0 chr6 18116976 18117004 -171162550 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2155 98 0 18 chr6 18117004 18117290 -171162264 - AluSq SINE Alu -32 281 1 2321 49 0 11 chr6 18117630 18117942 -171161612 - AluY SINE Alu 0 309 1 336 338 80 7 chr6 18120405 18120556 -171158998 + MIR SINE MIR 88 249 -13 234 306 0 0 chr6 18120773 18120822 -171158732 + L2 LINE L2 3186 3234 -38 479 209 39 23 chr6 18120881 18121010 -171158544 - MER69A DNA AcHobo -45 132 2 2198 90 30 13 chr6 18121288 18121588 -171157966 + AluSc SINE Alu 1 305 -4 1685 167 57 47 chr6 18121594 18121977 -171157577 - MLT1B LTR MaLR 0 390 4 264 309 21 0 chr6 18122215 18122309 -171157245 + CT-rich Low_complexity Low_complexity 1 96 0 300 300 12 0 chr6 18122564 18122644 -171156910 + MIR3 SINE MIR 112 192 -16 203 382 53 59 chr6 18123121 18123273 -171156281 - L2 LINE L2 -18 3254 3104 1150 273 68 32 chr6 18124498 18124967 -171154587 - L1ME4a LINE L1 -21 6100 5615 2427 65 3 3 chr6 18125766 18126057 -171153497 - AluSp SINE Alu -22 291 1 183 245 38 19 chr6 18126106 18126159 -171153395 - L2 LINE L2 -82 3190 3137 1003 184 163 0 chr6 18126384 18126629 -171152925 - Zaphod DNA AcHobo -13 4018 3734 246 222 122 0 chr6 18126734 18126824 -171152730 + L1ME4a LINE L1 6021 6121 0 196 340 0 39 chr6 18126979 18127082 -171152472 + L3 LINE CR1 100 198 -1379 343 318 97 9 chr6 18127208 18127436 -171152118 - MIR SINE MIR -12 250 2 21 0 0 0 chr6 18127955 18127976 -171151578 + AT_rich Low_complexity Low_complexity 1 21 0 1951 93 0 0 chr6 18128116 18128363 -171151191 + AluY SINE Alu 50 296 -15 505 150 0 0 chr6 18128765 18128845 -171150709 - MADE1 DNA Mariner 0 80 1 332 322 34 80 chr6 18130105 18130217 -171149337 - L2 LINE L2 -56 3216 3100 186 43 0 0 chr6 18130217 18130240 -171149314 + (CAA)n Simple_repeat Simple_repeat 2 24 0 332 322 34 80 chr6 18130240 18130589 -171148965 - L2 LINE L2 -172 3100 2688 420 322 99 25 chr6 18130759 18131001 -171148553 - MIR SINE MIR 0 262 3 208 100 20 20 chr6 18132747 18132797 -171146757 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 368 305 120 73 chr6 18134110 18134369 -171145185 + L3 LINE CR1 241 511 -1066 413 276 269 15 chr6 18134405 18134673 -171144881 + L3 LINE CR1 1113 1448 -129 329 270 9 49 chr6 18135128 18135299 -171144255 - MIR SINE MIR -62 146 37 2344 105 3 0 chr6 18135843 18136147 -171143407 + AluSp SINE Alu 1 305 -8 23 78 0 0 chr6 18136175 18136226 -171143328 + AT_rich Low_complexity Low_complexity 1 51 0 336 224 112 9 chr6 18138536 18138643 -171140911 + MER103 DNA DNA 3 120 -46 199 265 20 0 chr6 18138727 18138776 -171140778 - MIR SINE MIR -80 128 79 258 81 0 0 chr6 18139939 18139976 -171139578 + (CA)n Simple_repeat Simple_repeat 1 37 0 657 196 6 18 chr6 18140167 18140335 -171139219 + GA-rich Low_complexity Low_complexity 3 168 0 3249 16 0 0 chr6 18142279 18142649 -171136905 - L1HS LINE L1 -1516 4630 4261 8010 18 0 0 chr6 18142649 18144149 -171135405 + L1HS LINE L1 4654 6153 -2 339 221 0 0 chr6 18144151 18144278 -171135276 + A-rich Low_complexity Low_complexity 1 127 0 199 326 0 0 chr6 18144448 18144494 -171135060 + MIR SINE MIR 36 81 -127 198 302 58 58 chr6 18144534 18144620 -171134934 - L3b LINE CR1 -30 1553 1468 345 244 12 0 chr6 18145683 18145765 -171133789 + MLT1L LTR MaLR 118 200 -415 404 239 26 9 chr6 18146062 18146175 -171133379 + MLT1L LTR MaLR 501 615 0 187 358 11 21 chr6 18146356 18146451 -171133103 + MIR SINE MIR 45 138 -70 205 310 113 0 chr6 18146527 18146598 -171132956 - L2 LINE L2 -36 3277 3199 553 291 141 10 chr6 18147346 18147552 -171132002 + MIR SINE MIR 20 252 -10 2601 55 0 3 chr6 18147701 18148011 -171131543 - AluY SINE Alu -2 309 1 2526 80 0 0 chr6 18149095 18149406 -171130148 + AluY SINE Alu 1 311 0 221 313 0 12 chr6 18149685 18149765 -171129789 + T-rich Low_complexity Low_complexity 4 82 0 1862 139 34 7 chr6 18149785 18150079 -171129475 + AluJb SINE Alu 3 304 -8 297 0 0 0 chr6 18150985 18151018 -171128536 + (TG)n Simple_repeat Simple_repeat 1 33 0 2199 130 0 0 chr6 18152078 18152379 -171127175 + AluSx SINE Alu 1 301 -11 462 305 117 20 chr6 18152502 18152751 -171126803 + L2 LINE L2 2808 3080 -233 348 180 250 10 chr6 18152956 18153056 -171126498 - MLT1J2 LTR MaLR -287 163 40 333 319 43 37 chr6 18153130 18153318 -171126236 + L2 LINE L2 3121 3309 -4 1932 132 0 0 chr6 18153359 18153632 -171125922 + AluSc SINE Alu 36 308 -1 252 0 0 0 chr6 18153651 18153679 -171125875 + (TG)n Simple_repeat Simple_repeat 2 29 0 242 299 0 0 chr6 18153680 18153747 -171125807 - L2 LINE L2 -301 2971 2905 21 0 0 0 chr6 18153875 18153896 -171125658 + AT_rich Low_complexity Low_complexity 1 21 0 1580 184 40 4 chr6 18154286 18154563 -171124991 - AluJo SINE Alu -25 287 1 194 374 48 0 chr6 18154712 18154795 -171124759 - L2 LINE L2 -48 3224 3138 231 293 73 55 chr6 18156034 18156090 -171123464 + MLT1I LTR MaLR 70 123 -286 1483 231 14 22 chr6 18156090 18156250 -171123304 - MLT1A1 LTR MaLR 0 365 205 2348 85 0 20 chr6 18156250 18156555 -171122999 - AluY SINE Alu -12 299 1 1483 231 14 22 chr6 18156555 18156762 -171122792 - MLT1A1 LTR MaLR -160 205 1 231 293 73 55 chr6 18156762 18156869 -171122685 + MLT1I LTR MaLR 123 236 -173 310 264 11 0 chr6 18156892 18156979 -171122575 + MLT1J1 LTR MaLR 345 432 -14 192 313 189 45 chr6 18157566 18157767 -171121787 + L2 LINE L2 2829 3058 -214 5379 200 44 23 chr6 18157819 18158763 -171120791 - L1MB8 LINE L1 -59 6399 5476 6352 96 12 6 chr6 18158763 18160683 -171118871 - L1PA14 LINE L1 0 6161 4233 5379 200 44 23 chr6 18160683 18161847 -171117707 - L1MB8 LINE L1 -982 5476 4252 6133 210 73 43 chr6 18161871 18162260 -171117294 - L1MB8 LINE L1 -3327 3099 2723 2410 101 0 22 chr6 18162260 18162577 -171116977 + AluY SINE Alu 1 310 -1 6133 210 73 43 chr6 18162577 18164663 -171114891 - L1MB8 LINE L1 -3703 2723 493 374 321 9 0 chr6 18215331 18215440 -171064114 + MER81 DNA DNA 5 114 0 4859 267 63 38 chr6 18215766 18216584 -171062970 + L1MEc LINE L1 118 914 -5482 2045 151 0 0 chr6 18216584 18216876 -171062678 + AluJb SINE Alu 1 292 -20 234 0 0 0 chr6 18216886 18216912 -171062642 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4859 267 63 38 chr6 18216912 18217131 -171062423 + L1MEc LINE L1 922 1134 -5262 1376 236 12 60 chr6 18217131 18217384 -171062170 - MSTD LTR MaLR 0 396 169 2073 122 0 3 chr6 18217384 18217672 -171061882 - AluSx SINE Alu -19 293 7 1376 236 12 60 chr6 18217672 18217834 -171061720 - MSTD LTR MaLR -227 169 1 4859 267 63 38 chr6 18217834 18218978 -171060576 + L1MEc LINE L1 1134 2367 -4029 999 275 37 62 chr6 18219337 18219820 -171059734 - L1ME LINE L1 -366 5873 5403 407 297 118 44 chr6 18219860 18219975 -171059579 - L1ME LINE L1 -818 5397 5292 2217 112 3 0 chr6 18219975 18220278 -171059276 - AluY SINE Alu -7 304 1 407 297 118 44 chr6 18220278 18220391 -171059163 - L1ME LINE L1 -923 5292 5152 607 226 0 0 chr6 18220424 18220539 -171059015 - FLAM_A SINE Alu -17 116 2 2150 120 3 3 chr6 18220633 18220933 -171058621 + AluSx SINE Alu 1 300 -12 909 263 98 63 chr6 18220935 18221852 -171057702 - L1ME LINE L1 -1114 5101 4153 375 290 79 46 chr6 18221867 18222002 -171057552 - L1ME LINE L1 -3999 2397 2268 2083 144 0 6 chr6 18222002 18222315 -171057239 - AluSx SINE Alu -1 311 1 375 290 79 46 chr6 18222315 18222659 -171056895 - L1ME LINE L1 -4128 2268 1902 226 333 12 24 chr6 18222854 18222938 -171056616 - L2 LINE L2 -679 2635 2553 33 0 0 0 chr6 18223445 18223478 -171056076 + AT_rich Low_complexity Low_complexity 1 33 0 244 272 92 34 chr6 18223522 18223593 -171055961 - HAL1 LINE L1 -116 2391 2326 2300 118 31 11 chr6 18223593 18223950 -171055604 - THE1B LTR MaLR 0 364 1 244 272 92 34 chr6 18223950 18225061 -171054493 - HAL1 LINE L1 -181 2326 1113 1733 153 0 21 chr6 18225372 18225654 -171053900 + AluJo SINE Alu 5 280 -32 468 0 0 0 chr6 18225657 18225709 -171053845 + (CA)n Simple_repeat Simple_repeat 2 53 0 333 279 0 0 chr6 18226820 18226888 -171052666 + L2 LINE L2 3201 3268 -4 227 270 235 9 chr6 18227053 18227168 -171052386 - L2 LINE L2 -9 3304 3164 606 269 81 54 chr6 18227389 18227724 -171051830 + LTR33 LTR ERVL 1 344 -177 1288 189 30 43 chr6 18227725 18228114 -171051440 + MLT2B1 LTR ERVL 2 369 -45 387 171 0 0 chr6 18228121 18228197 -171051357 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 474 207 80 20 chr6 18228197 18228347 -171051207 + LTR33 LTR ERVL 363 521 0 4046 122 20 9 chr6 18228633 18229272 -171050282 - Tigger3b DNA MER2_type 0 1232 587 3257 50 0 2 chr6 18229282 18229684 -171049870 - L1PA7 LINE L1 -453 5701 5301 3583 50 7 4 chr6 18229684 18230131 -171049423 + L1PA7 LINE L1 5693 6151 -3 2467 94 90 17 chr6 18230148 18230561 -171048993 - Tigger3b DNA MER2_type -643 588 146 638 155 0 0 chr6 18230566 18230669 -171048885 + AluSp/q SINE Alu 207 309 -4 1667 128 0 8 chr6 18231276 18231519 -171048035 + AluSx SINE Alu 40 280 -32 240 35 0 0 chr6 18231519 18231548 -171048006 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 349 261 29 7 chr6 18231560 18231698 -171047856 + L1ME3A LINE L1 5811 5951 -219 259 227 40 148 chr6 18231766 18231860 -171047694 + L1ME3A LINE L1 5965 6033 -137 2509 77 0 0 chr6 18231860 18232170 -171047384 - AluY SINE Alu -1 310 1 259 227 40 148 chr6 18232170 18232251 -171047303 + L1ME3A LINE L1 6033 6121 -49 747 69 17 9 chr6 18232385 18232501 -171047053 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 2161 165 6 0 chr6 18232598 18232962 -171046592 - L1PB4 LINE L1 -2 6154 5789 270 136 0 0 chr6 18232962 18233006 -171046548 + (TG)n Simple_repeat Simple_repeat 2 45 0 455 243 28 62 chr6 18233103 18233280 -171046274 - MLT1J LTR MaLR -24 487 317 2050 142 3 0 chr6 18234036 18234331 -171045223 - AluSx SINE Alu -16 296 1 299 322 42 25 chr6 18234958 18235076 -171044478 + L2 LINE L2 3153 3272 0 852 149 186 0 chr6 18235342 18235536 -171044018 + L1MD2 LINE L1 6113 6342 -17 34 0 0 0 chr6 18235558 18235592 -171043962 + AT_rich Low_complexity Low_complexity 1 34 0 6591 76 8 0 chr6 18235728 18236652 -171042902 + L1PA13 LINE L1 5214 6144 -19 32 57 0 0 chr6 18236826 18236879 -171042675 + AT_rich Low_complexity Low_complexity 1 53 0 418 93 0 27 chr6 18237256 18237331 -171042223 - L1MA7 LINE L1 -25 6266 6194 1870 161 0 26 chr6 18237517 18237828 -171041726 + AluJb SINE Alu 3 305 -7 483 18 0 0 chr6 18239510 18239566 -171039988 + (TA)n Simple_repeat Simple_repeat 1 56 0 306 223 43 0 chr6 18240548 18240642 -171038912 - L1ME4a LINE L1 -1 6120 6023 * 4249 188 54 17 chr6 18240640 18242344 -171037210 + L1MB7 LINE L1 4381 6155 -29 406 190 115 2 chr6 18242497 18242661 -171036893 + LTR54B LTR ERV1 68 279 -219 401 266 0 47 chr6 18242851 18243020 -171036534 - MER34 LTR ERV1 -362 180 20 242 95 0 0 chr6 18243184 18243226 -171036328 + L1MB7 LINE L1 6142 6183 -1 303 28 0 0 chr6 18243357 18243393 -171036161 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 241 19 0 chr6 18243500 18243554 -171036000 - MER113 DNA MER1_type? 0 521 467 440 219 18 0 chr6 18243693 18243807 -171035747 - MER113 DNA MER1_type? -405 116 1 554 287 59 87 chr6 18245485 18245990 -171033564 - MLT1J LTR MaLR -7 504 14 502 262 81 7 chr6 18246568 18246717 -171032837 - L1MC4a LINE L1 -1965 5843 5684 23 0 0 0 chr6 18247078 18247101 -171032453 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr6 18247555 18247589 -171031965 + AT_rich Low_complexity Low_complexity 1 34 0 227 325 49 32 chr6 18248159 18248282 -171031272 - MIR SINE MIR -64 144 20 333 275 152 7 chr6 18248565 18248703 -171030851 + MIR3 SINE MIR 29 186 -22 228 143 0 0 chr6 18249476 18249518 -171030036 + (TG)n Simple_repeat Simple_repeat 2 43 0 1534 251 100 34 chr6 18249658 18250069 -171029485 - L1ME LINE L1 -4637 1903 1521 2510 96 0 0 chr6 18250069 18250381 -171029173 - AluSx SINE Alu 0 312 1 1534 251 100 34 chr6 18250381 18250985 -171028569 - L1ME LINE L1 -5019 1521 846 387 271 58 58 chr6 18251234 18251441 -171028113 - L1ME LINE L1 -5862 668 462 230 269 40 99 chr6 18251645 18251737 -171027817 + L1ME LINE L1 103 178 -5892 195 42 0 0 chr6 18251737 18251761 -171027793 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 230 269 40 99 chr6 18251761 18251869 -171027685 + L1ME LINE L1 178 291 -5779 204 40 0 0 chr6 18252984 18253009 -171026545 + (TG)n Simple_repeat Simple_repeat 2 26 0 423 351 21 21 chr6 18253493 18253684 -171025870 - MIR3 SINE MIR -6 202 12 397 209 299 8 chr6 18255054 18255188 -171024366 + MER5A DNA MER1_type 9 181 -8 185 180 20 0 chr6 18255344 18255394 -171024160 + (TA)n Simple_repeat Simple_repeat 1 51 0 248 338 0 14 chr6 18255503 18255577 -171023977 - L2 LINE L2 -46 3226 3154 188 179 0 89 chr6 18256217 18256273 -171023281 - MIR3 SINE MIR -5 203 153 400 200 0 0 chr6 18256304 18256374 -171023180 - MIR3 SINE MIR -52 156 87 4258 212 61 88 chr6 18256600 18257029 -171022525 - L1ME LINE L1 -3890 2650 2211 2138 131 0 0 chr6 18257029 18257319 -171022235 + AluSx SINE Alu 14 303 -9 4258 212 61 88 chr6 18257319 18258168 -171021386 - L1ME LINE L1 -4329 2211 1469 231 61 0 0 chr6 18258168 18258201 -171021353 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4258 212 61 88 chr6 18258201 18258740 -171020814 - L1ME LINE L1 -5071 1469 917 303 362 53 32 chr6 18259209 18259491 -171020063 - L1ME LINE L1 -6194 346 59 274 287 29 103 chr6 18259491 18259627 -171019927 - MER5B DNA MER1_type -3 175 50 713 307 46 8 chr6 18259804 18260042 -171019512 + MIR SINE MIR 6 252 -10 241 295 0 13 chr6 18260034 18260112 -171019442 - MIR3 SINE MIR -40 168 92 * 243 0 0 0 chr6 18260484 18260511 -171019043 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 266 257 13 0 chr6 18261988 18262077 -171017477 + MIR SINE MIR 103 192 -65 388 312 0 0 chr6 18262158 18262267 -171017287 - MIR SINE MIR -1 261 153 203 133 0 0 chr6 18262317 18262347 -171017207 - MIR SINE MIR -115 147 118 180 97 0 0 chr6 18262363 18262394 -171017160 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 962 177 86 38 chr6 18262509 18262718 -171016836 + MER20 DNA MER1_type 1 219 0 261 368 7 14 chr6 18263629 18263773 -171015781 + GA-rich Low_complexity Low_complexity 4 146 0 1751 178 15 15 chr6 18265342 18265674 -171013880 + L1MC1 LINE L1 5907 6238 -95 883 135 8 0 chr6 18265932 18266058 -171013496 - MER20 DNA MER1_type 0 219 93 1359 257 149 39 chr6 18267131 18267749 -171011805 + L2 LINE L2 2172 2857 -457 1369 203 11 85 chr6 18267752 18268146 -171011408 + MLT1A1 LTR MaLR 1 456 -1 864 298 91 26 chr6 18268147 18268577 -171010977 + L2 LINE L2 2856 3313 0 553 261 174 19 chr6 18268859 18269066 -171010488 - MIR SINE MIR -1 261 23 309 256 13 13 chr6 18270693 18270771 -171008783 - MER102a DNA MER1_type -3 327 250 368 314 87 37 chr6 18270849 18271026 -171008528 - MER102a DNA MER1_type -66 264 70 2409 86 3 3 chr6 18271026 18271329 -171008225 - AluSq SINE Alu -10 303 1 368 314 87 37 chr6 18271329 18271393 -171008161 - MER102a DNA MER1_type -260 70 11 236 315 185 0 chr6 18271557 18271703 -171007851 + MIR3 SINE MIR 21 193 -15 515 277 6 51 chr6 18271874 18272051 -171007503 + MER5B DNA MER1_type 10 178 0 686 253 0 0 chr6 18272420 18272582 -171006972 + MER96B DNA MER1_type? 251 412 -5 381 254 85 0 chr6 18272600 18272718 -171006836 + MIR SINE MIR 90 217 -45 306 235 209 0 chr6 18273139 18273254 -171006300 - MER5A DNA MER1_type -5 184 46 640 171 57 0 chr6 18273254 18273359 -171006195 - MER45A DNA AcHobo -1 177 67 667 162 0 0 chr6 18273457 18273556 -171005998 + AluJ/FLAM SINE Alu 1 99 -213 258 200 44 0 chr6 18273624 18273669 -171005885 - MER5A DNA MER1_type -134 55 9 991 185 77 15 chr6 18273684 18273879 -171005675 + MER3 DNA MER1_type 1 207 -2 450 0 0 0 chr6 18274116 18274166 -171005388 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 155 16 28 chr6 18274675 18274999 -171004555 + GA-rich Low_complexity Low_complexity 1 320 0 248 135 0 39 chr6 18275019 18275071 -171004483 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 227 198 22 22 chr6 18275102 18275193 -171004361 + GA-rich Low_complexity Low_complexity 2 92 0 253 273 91 21 chr6 18275542 18275685 -171003869 + L1P LINE L1 4886 5038 -1108 624 279 73 49 chr6 18275706 18275963 -171003591 - L1ME LINE L1 -525 5639 5356 1815 167 0 0 chr6 18275963 18276294 -171003260 - AluJb SINE Alu 0 331 1 624 279 73 49 chr6 18276294 18276446 -171003108 - L1ME LINE L1 -808 5356 5209 2071 127 6 13 chr6 18277129 18277429 -171002125 + AluSx SINE Alu 1 300 -12 811 86 0 16 chr6 18277429 18277557 -171001997 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 2071 127 6 13 chr6 18277557 18277570 -171001984 + AluSx SINE Alu 300 312 0 358 278 25 5 chr6 18277952 18278131 -171001423 + L3 LINE CR1 1193 1456 -121 295 275 114 23 chr6 18278627 18278758 -171000796 + MIR SINE MIR 2 144 -118 313 276 75 30 chr6 18278787 18278921 -171000633 - MIR SINE MIR -36 226 87 21 0 0 0 chr6 18280093 18280114 -170999440 + AT_rich Low_complexity Low_complexity 1 21 0 225 45 68 80 chr6 18281129 18281217 -170998337 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 185 235 103 29 chr6 18283932 18284000 -170995554 + L2 LINE L2 100 172 -3142 390 274 89 36 chr6 18284331 18284685 -170994869 + L2 LINE L2 2651 3021 -251 470 288 89 25 chr6 18285739 18285975 -170993579 - L2 LINE L2 -937 2377 2127 2410 134 48 70 chr6 18286615 18286961 -170992593 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18286961 18286989 -170992565 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2410 134 48 70 chr6 18286989 18287083 -170992471 - Tigger2a DNA MER2_type -2610 98 3 1024 127 7 0 chr6 18287093 18287243 -170992311 + AluJb SINE Alu 1 151 -161 2280 98 0 7 chr6 18287332 18287627 -170991927 - AluSg SINE Alu -17 293 1 1601 153 51 37 chr6 18288295 18288590 -170990964 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18290519 18290544 -170989010 + AT_rich Low_complexity Low_complexity 1 25 0 2489 84 0 0 chr6 18291906 18292217 -170987337 - AluY SINE Alu 0 311 1 572 124 277 22 chr6 18293140 18293277 -170986277 + MLT1C LTR MaLR 6 177 -290 460 192 0 0 chr6 18293282 18293360 -170986194 + FAM SINE Alu 97 174 -11 1614 171 26 55 chr6 18293441 18293750 -170985804 + AluJb SINE Alu 1 300 -12 943 197 67 31 chr6 18293750 18293973 -170985581 + MLT1C LTR MaLR 237 467 0 2316 99 0 0 chr6 18294214 18294516 -170985038 + AluSc SINE Alu 1 302 -7 263 324 152 58 chr6 18294818 18295001 -170984553 + L2 LINE L2 1271 1435 -1879 2361 112 16 48 chr6 18295001 18295377 -170984177 + THE1B LTR MaLR 1 364 0 263 324 152 58 chr6 18295377 18295896 -170983658 + L2 LINE L2 1435 2039 -1275 186 300 0 0 chr6 18295929 18295979 -170983575 + L2 LINE L2 2218 2267 -1047 342 324 28 0 chr6 18296538 18296646 -170982908 + L2 LINE L2 3203 3313 0 294 326 63 78 chr6 18296650 18297157 -170982397 + L2 LINE L2 2687 3181 -91 205 281 67 101 chr6 18299019 18299197 -170980357 + L2 LINE L2 2931 3102 -170 760 322 90 40 chr6 18299240 18299760 -170979794 - L2 LINE L2 -6 3307 2747 493 281 88 69 chr6 18299904 18300281 -170979273 + L2 LINE L2 2324 2707 -607 349 345 170 44 chr6 18300497 18300839 -170978715 + L2 LINE L2 2887 3271 -1 428 279 70 84 chr6 18302018 18302305 -170977249 - L2 LINE L2 -32 3240 2958 579 287 123 96 chr6 18303158 18303955 -170975599 + L2 LINE L2 2198 3030 -242 315 325 18 0 chr6 18303976 18304090 -170975464 + L2 LINE L2 2673 2788 -526 368 284 78 9 chr6 18304426 18304542 -170975012 - L2 LINE L2 0 3272 3149 299 282 0 12 chr6 18304654 18304739 -170974815 + L2 LINE L2 3230 3313 0 987 127 0 0 chr6 18305150 18305323 -170974231 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 2211 96 14 3 chr6 18305607 18305899 -170973655 - AluSc SINE Alu -14 295 1 341 114 0 51 chr6 18307562 18307641 -170971913 + (TC)n Simple_repeat Simple_repeat 2 76 0 385 282 63 50 chr6 18308448 18308854 -170970700 + L1ME4a LINE L1 5461 5915 -206 2492 234 65 50 chr6 18309729 18310371 -170969183 - L1M4 LINE L1 -871 5275 4644 2346 94 3 0 chr6 18310371 18310668 -170968886 - AluY SINE Alu -13 298 1 2492 234 65 50 chr6 18310668 18310942 -170968612 - L1M4 LINE L1 -1502 4644 4341 523 138 0 0 chr6 18310942 18311022 -170968532 - MADE1 DNA Mariner 0 80 1 2492 234 65 50 chr6 18311022 18311070 -170968484 - L1M4 LINE L1 -1805 4341 4295 1851 83 4 0 chr6 18311071 18311311 -170968243 - LTR12 LTR ERV1 0 714 474 1370 124 0 5 chr6 18311311 18311512 -170968042 + AluY SINE Alu 104 303 -8 1823 92 251 136 chr6 18311513 18311947 -170967607 - LTR12 LTR ERV1 -230 484 1 488 204 35 42 chr6 18311947 18311979 -170967575 - L1M4 LINE L1 -1849 4297 4266 2317 166 8 0 chr6 18311979 18312341 -170967213 + MER47A DNA MER2_type 1 365 -1 488 204 35 42 chr6 18312341 18312450 -170967104 - L1M4 LINE L1 -1880 4266 4157 846 293 111 11 chr6 18312470 18312920 -170966634 + Charlie7 DNA MER1_type 89 583 -2029 6077 135 18 28 chr6 18313129 18314776 -170964778 + L1MA4A LINE L1 4658 6284 -19 5232 91 5 33 chr6 18315287 18315946 -170963608 - L1PA14 LINE L1 -17 6144 5507 2120 138 0 0 chr6 18315946 18316251 -170963303 - AluSx SINE Alu -2 310 6 5232 91 5 33 chr6 18316251 18316357 -170963197 - L1PA14 LINE L1 -654 5507 5400 1091 342 67 33 chr6 18316562 18317323 -170962231 + L2 LINE L2 2032 2818 -496 431 313 49 0 chr6 18318182 18318326 -170961228 + L2 LINE L2 3162 3312 -1 1369 201 123 18 chr6 18318760 18319006 -170960548 + MLT1D LTR MaLR 13 304 -201 1519 188 7 11 chr6 18319006 18319283 -170960271 + AluSx SINE Alu 37 312 0 1369 201 123 18 chr6 18319283 18319369 -170960185 + MLT1D LTR MaLR 304 380 -125 435 189 22 0 chr6 18319411 18319501 -170960053 - L1MA9 LINE L1 -34 6278 6187 1371 210 30 0 chr6 18319540 18319807 -170959747 - AluSg SINE Alu -17 293 19 269 286 39 0 chr6 18319814 18319891 -170959663 - AluY SINE Alu -4 297 218 2306 190 197 59 chr6 18319904 18320744 -170958810 - LTR12 LTR ERV1 -23 1523 6 539 216 119 57 chr6 18320849 18321025 -170958529 - pTR5 LTR ERV1 -1504 934 748 1573 118 0 0 chr6 18321030 18321251 -170958303 - AluY SINE Alu -90 221 1 1314 153 54 12 chr6 18321251 18321486 -170958068 - L1MA9 LINE L1 -254 6058 5814 1084 201 0 0 chr6 18321504 18321688 -170957866 - AluJo SINE Alu -14 298 115 1251 198 119 8 chr6 18321688 18321956 -170957598 + AluJb SINE Alu 1 298 -14 1436 176 23 55 chr6 18321956 18322189 -170957365 + L1 LINE L1 4321 4541 -1605 7851 123 27 14 chr6 18322189 18322387 -170957167 + Tigger3b DNA MER2_type 2 196 -2832 2250 93 0 3 chr6 18322387 18322677 -170956877 + AluSc SINE Alu 1 289 -20 7851 123 27 14 chr6 18322677 18323692 -170955862 + Tigger3b DNA MER2_type 196 1231 0 1436 176 23 55 chr6 18323692 18323805 -170955749 + L1 LINE L1 4541 4656 -1490 301 121 103 17 chr6 18323805 18323863 -170955691 + MLT1D LTR MaLR 402 464 -41 281 98 0 20 chr6 18324118 18324169 -170955385 + (CA)n Simple_repeat Simple_repeat 2 51 0 2525 71 3 0 chr6 18324907 18325217 -170954337 + AluY SINE Alu 1 311 0 258 306 28 9 chr6 18325280 18325388 -170954166 - MIR SINE MIR -42 220 111 647 231 176 18 chr6 18326122 18326343 -170953211 - MER112 DNA MER1_type 0 256 1 6701 173 29 11 chr6 18326563 18326761 -170952793 - L1MC1 LINE L1 -9 6324 6131 2059 106 3 40 chr6 18326761 18327063 -170952491 - AluSq SINE Alu -22 291 1 6701 173 29 11 chr6 18327063 18328827 -170950727 - L1MC1 LINE L1 -202 6131 4330 2623 132 51 10 chr6 18328829 18329238 -170950316 + MSTB LTR MaLR 1 426 0 9433 185 6 7 chr6 18329238 18330876 -170948678 + MSTB-int LTR MaLR 1 1637 -14 2511 162 36 12 chr6 18330889 18331302 -170948252 + MSTB LTR MaLR 1 423 -3 1739 208 25 0 chr6 18331303 18331664 -170947890 - L1MC1 LINE L1 -1811 4335 3966 384 277 31 19 chr6 18332440 18332599 -170946955 - MIR SINE MIR -5 257 97 2113 166 52 6 chr6 18332651 18333000 -170946554 + MLT1A1 LTR MaLR 1 365 0 2236 121 0 6 chr6 18333101 18333415 -170946139 - AluSx SINE Alu 0 312 1 1313 269 53 27 chr6 18333790 18334239 -170945315 - LTR16B LTR ERVL 0 464 4 2888 161 25 42 chr6 18334377 18334906 -170944648 + MLT2B1 LTR ERVL 1 520 0 2241 168 35 38 chr6 18335875 18336328 -170943226 + MLT1C LTR MaLR 1 452 -15 198 71 0 0 chr6 18336629 18336657 -170942897 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1459 136 9 5 chr6 18338874 18339088 -170940466 + AluJb SINE Alu 87 301 -11 261 322 52 17 chr6 18339091 18339206 -170940348 + MIR SINE MIR 62 180 -82 415 206 0 62 chr6 18339446 18339543 -170940011 + L1MC5 LINE L1 7033 7123 -838 600 329 24 0 chr6 18339616 18339826 -170939728 + L2 LINE L2 2874 3088 -225 769 324 16 28 chr6 18339910 18340160 -170939394 + MIR SINE MIR 11 257 -5 447 214 137 23 chr6 18340209 18340340 -170939214 + L2 LINE L2 3167 3312 -1 197 333 76 23 chr6 18340938 18341070 -170938484 - L3 LINE CR1 -330 1247 1109 313 257 7 71 chr6 18341072 18341212 -170938342 - MER94 DNA DNA 0 134 4 1850 174 0 0 chr6 18341228 18341516 -170938038 - AluJo SINE Alu -20 292 5 791 270 72 28 chr6 18342623 18343314 -170936240 - L1ME LINE L1 -580 5582 4710 300 265 0 78 chr6 18343490 18343592 -170935962 - L1ME3A LINE L1 -115 6055 5962 811 133 0 53 chr6 18343602 18343753 -170935801 - FLAM_C SINE Alu 0 143 1 5293 221 62 54 chr6 18343809 18344590 -170934964 - L1ME1 LINE L1 -19 6147 5374 2469 75 0 0 chr6 18344590 18344931 -170934623 - AluY SINE Alu 0 311 1 5293 221 62 54 chr6 18344931 18345734 -170933820 - L1ME1 LINE L1 -792 5374 4579 2464 76 3 0 chr6 18345734 18346036 -170933518 - AluSg SINE Alu -7 303 1 5293 221 62 54 chr6 18346036 18346604 -170932950 - L1ME1 LINE L1 -1587 4579 3968 2138 113 0 0 chr6 18346604 18346927 -170932627 + AluSq SINE Alu 1 323 0 5293 221 62 54 chr6 18346927 18347302 -170932252 - L1ME1 LINE L1 -2198 3968 3598 440 309 63 34 chr6 18347750 18348056 -170931498 - L1ME LINE L1 -5876 654 65 1771 204 165 45 chr6 18348210 18348950 -170930604 - L1MC5 LINE L1 -640 7321 6478 546 307 90 26 chr6 18349085 18349662 -170929892 - HAL1b LINE L1 -525 823 210 21 71 0 0 chr6 18349731 18349773 -170929781 + AT_rich Low_complexity Low_complexity 1 42 0 50 31 0 0 chr6 18349834 18349898 -170929656 + AT_rich Low_complexity Low_complexity 1 64 0 184 216 54 68 chr6 18350418 18350492 -170929062 - MIR SINE MIR -159 103 31 198 246 0 0 chr6 18351222 18351283 -170928271 + (TA)n Simple_repeat Simple_repeat 2 62 0 346 288 130 40 chr6 18352564 18352741 -170926813 - MIR SINE MIR -50 212 20 315 294 196 39 chr6 18354578 18354782 -170924772 - MIR SINE MIR -12 250 15 4129 172 61 45 chr6 18355062 18355900 -170923654 + MER21B LTR ERV1 2 852 -11 6508 119 80 51 chr6 18356057 18356700 -170922854 + Tigger3b DNA MER2_type 1 624 -2404 1690 192 0 7 chr6 18356700 18357007 -170922547 - AluJo SINE Alu 0 305 1 6508 119 80 51 chr6 18357007 18357210 -170922344 + Tigger3b DNA MER2_type 624 820 -2208 230 81 27 0 chr6 18357210 18357247 -170922307 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 6508 119 80 51 chr6 18357247 18357316 -170922238 + Tigger3b DNA MER2_type 820 886 -2142 2176 121 10 0 chr6 18357316 18357621 -170921933 - AluSx SINE Alu -4 308 1 6508 119 80 51 chr6 18357621 18357898 -170921656 + Tigger3b DNA MER2_type 886 1231 0 1183 240 83 52 chr6 18358563 18359008 -170920546 + MLT1L LTR MaLR 126 584 -31 2203 110 7 0 chr6 18359039 18359348 -170920206 - AluSp SINE Alu -2 311 1 2184 222 14 34 chr6 18359354 18359908 -170919646 - MER74A LTR ERVL -12 546 4 1342 113 43 0 chr6 18359993 18360179 -170919375 + AluJb SINE Alu 105 298 -14 702 282 127 50 chr6 18360326 18360766 -170918788 - MLT1J LTR MaLR -35 476 3 2360 81 0 13 chr6 18360811 18361119 -170918435 - AluY SINE Alu -7 304 1 192 186 53 0 chr6 18361685 18361798 -170917756 + (TA)n Simple_repeat Simple_repeat 2 120 0 407 217 8 42 chr6 18362022 18362142 -170917412 - MIR SINE MIR 0 262 147 2096 123 0 0 chr6 18362417 18362726 -170916828 - AluSx SINE Alu 0 309 1 2320 108 16 90 chr6 18363277 18363710 -170915844 + L1MA2 LINE L1 5902 6302 -2 1318 282 82 28 chr6 18364950 18365414 -170914140 - LTR33 LTR ERVL -2 519 31 2272 134 48 70 chr6 18415773 18416119 -170863435 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18416119 18416147 -170863407 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2272 134 48 70 chr6 18416147 18416241 -170863313 - Tigger2a DNA MER2_type -2610 98 3 1032 127 7 0 chr6 18416251 18416401 -170863153 + AluJb SINE Alu 1 151 -161 2298 98 0 7 chr6 18416490 18416785 -170862769 - AluSg SINE Alu -17 293 1 1612 153 51 37 chr6 18417453 18417748 -170861806 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18419677 18419702 -170859852 + AT_rich Low_complexity Low_complexity 1 25 0 2509 84 0 0 chr6 18421064 18421375 -170858179 - AluY SINE Alu 0 311 1 567 124 277 22 chr6 18422298 18422435 -170857119 + MLT1C LTR MaLR 6 177 -290 439 192 0 0 chr6 18422440 18422518 -170857036 + FAM SINE Alu 97 174 -11 1628 171 26 55 chr6 18422599 18422908 -170856646 + AluJb SINE Alu 1 300 -12 939 197 67 31 chr6 18422908 18423131 -170856423 + MLT1C LTR MaLR 237 467 0 2336 99 0 0 chr6 18423372 18423674 -170855880 + AluSc SINE Alu 1 302 -7 2229 112 16 48 chr6 18424159 18424535 -170855019 + THE1B LTR MaLR 1 364 0 312 324 28 0 chr6 18425696 18425804 -170853750 + L2 LINE L2 3203 3313 0 207 344 62 69 chr6 18425808 18426099 -170853455 + L2 LINE L2 2687 2975 -339 204 337 60 0 chr6 18427663 18427746 -170851808 + MIR SINE MIR 67 154 -108 1625 164 32 4 chr6 18428460 18428741 -170850813 + AluJo SINE Alu 1 289 -23 387 169 0 0 chr6 18428749 18428820 -170850734 + (TA)n Simple_repeat Simple_repeat 1 71 0 361 236 71 44 chr6 18428827 18429009 -170850545 - HAL1 LINE L1 0 2507 2321 * 505 328 58 9 chr6 18429002 18429331 -170850223 - L1ME3A LINE L1 -230 5940 5596 23 33 0 0 chr6 18429368 18429398 -170850156 + AT_rich Low_complexity Low_complexity 1 30 0 1230 150 13 18 chr6 18429399 18429578 -170849976 - L1MA4 LINE L1 -10 6290 6112 180 0 0 0 chr6 18429578 18429598 -170849956 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1919 149 7 0 chr6 18429598 18429880 -170849674 - AluSx SINE Alu -28 284 1 1230 150 13 18 chr6 18429880 18429925 -170849629 - L1MA4 LINE L1 -186 6114 6066 883 273 191 71 chr6 18430096 18430365 -170849189 + L2 LINE L2 1822 2057 -1257 378 132 0 0 chr6 18430365 18430418 -170849136 - AluJb SINE Alu -84 218 166 883 273 191 71 chr6 18430418 18430979 -170848575 + L2 LINE L2 2057 2810 -504 257 289 37 70 chr6 18431131 18431318 -170848236 + L2 LINE L2 3112 3292 -21 2194 103 3 13 chr6 18431486 18431786 -170847768 - AluSx SINE Alu -15 297 1 2032 138 27 0 chr6 18432258 18432556 -170846998 + AluSx SINE Alu 3 308 -4 421 210 74 80 chr6 18433296 18433458 -170846096 + MIR SINE MIR 23 183 -79 2522 174 154 24 chr6 18433686 18433940 -170845614 + MLT1E1 LTR MaLR 1 221 -433 1904 133 3 36 chr6 18433940 18434295 -170845259 - AluSx SINE Alu 0 312 1 2522 174 154 24 chr6 18434295 18434619 -170844935 + MLT1E1 LTR MaLR 221 654 0 295 209 45 27 chr6 18434719 18434829 -170844725 - L1MEc LINE L1 -3238 2977 2866 * 2089 251 63 19 chr6 18434822 18436580 -170842974 - L1MEc LINE L1 -4423 1973 35 2545 53 0 7 chr6 18437444 18437745 -170841809 + AluY SINE Alu 1 299 -12 862 269 155 5 chr6 18437962 18438389 -170841165 + L2 LINE L2 2823 3313 0 1236 144 45 0 chr6 18438702 18438903 -170840651 + MER2 DNA MER2_type 1 210 -135 234 265 20 0 chr6 18438945 18438994 -170840560 + MER2 DNA MER2_type 283 332 -13 252 0 0 0 chr6 18439627 18439655 -170839899 + (TC)n Simple_repeat Simple_repeat 1 28 0 1738 150 32 42 chr6 18440109 18440422 -170839132 - AluJb SINE Alu -2 310 1 2514 57 7 3 chr6 18440538 18440839 -170838715 + AluY SINE Alu 1 302 -9 293 205 8 131 chr6 18441053 18441108 -170838446 - MIR SINE MIR -70 192 158 2384 102 0 3 chr6 18441108 18441421 -170838133 - AluSx SINE Alu 0 312 1 293 205 8 131 chr6 18441421 18441487 -170838067 - MIR SINE MIR -104 158 86 260 336 4 13 chr6 18441568 18441736 -170837818 - MER5A DNA MER1_type -19 160 4 2262 81 14 0 chr6 18442969 18443254 -170836300 + AluSq SINE Alu 3 291 -22 28 0 0 0 chr6 18443254 18443282 -170836272 + AT_rich Low_complexity Low_complexity 1 28 0 1495 206 42 13 chr6 18443661 18443971 -170835583 - MER58B DNA MER1_type -2 339 21 618 189 68 20 chr6 18444785 18444933 -170834621 + MER63 DNA MER1_type 904 1058 -4 5346 128 31 36 chr6 18444966 18445680 -170833874 - MER49 LTR ERV1 0 923 212 2152 108 3 3 chr6 18445680 18445976 -170833578 - AluSx SINE Alu -8 304 9 5346 128 31 36 chr6 18445976 18446188 -170833366 - MER49 LTR ERV1 -711 212 1 317 274 198 25 chr6 18446744 18446901 -170832653 + MIR3 SINE MIR 1 184 -24 26 64 0 0 chr6 18446902 18446949 -170832605 + AT_rich Low_complexity Low_complexity 1 47 0 282 56 0 0 chr6 18447912 18447948 -170831606 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 456 341 12 12 chr6 18448358 18448525 -170831029 - MIR3 SINE MIR -21 187 21 336 243 135 18 chr6 18448735 18448846 -170830708 + MER94 DNA DNA 10 133 -1 2424 92 0 0 chr6 18449138 18449441 -170830113 - AluSg SINE Alu -7 303 1 564 278 41 45 chr6 18449801 18450067 -170829487 + MER97c DNA MER1_type? 810 1074 -16 337 245 18 110 chr6 18450144 18450307 -170829247 + L2 LINE L2 2592 2739 -575 801 272 8 56 chr6 18450342 18450478 -170829076 + MIR SINE MIR 25 145 -117 1894 143 61 18 chr6 18450478 18450807 -170828747 - MER2 DNA MER2_type -1 343 1 801 272 8 56 chr6 18450807 18450920 -170828634 + MIR SINE MIR 145 262 0 2198 110 3 7 chr6 18450935 18451235 -170828319 + AluSp SINE Alu 1 299 -14 2215 75 4 0 chr6 18451237 18451517 -170828037 + AluY SINE Alu 22 302 -9 223 302 71 93 chr6 18451560 18451980 -170827574 + L2 LINE L2 2832 3242 -30 225 135 39 77 chr6 18451981 18452033 -170827521 - L1M3f LINE L1 -4213 1115 1066 184 315 0 19 chr6 18452539 18452593 -170826961 + L3b LINE CR1 1512 1564 -19 213 136 0 23 chr6 18452834 18452878 -170826676 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1214 188 9 5 chr6 18453157 18453380 -170826174 - AluJb SINE Alu -2 310 87 1891 130 0 11 chr6 18454253 18454530 -170825024 - AluSq SINE Alu -1 312 39 215 176 103 0 chr6 18454546 18454614 -170824940 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 362 343 96 23 chr6 18455257 18455703 -170823851 + L2 LINE L2 2524 3004 -309 774 200 117 0 chr6 18455813 18455958 -170823596 + FAM SINE Alu 5 166 -9 2378 82 0 0 chr6 18456061 18456353 -170823201 + AluSg SINE Alu 3 294 -16 642 265 56 67 chr6 18456840 18457226 -170822328 + L1MC4a LINE L1 5537 5796 -325 3440 172 103 28 chr6 18457252 18457298 -170822256 - L1MB8 LINE L1 -1 6177 6136 1271 191 164 37 chr6 18457298 18457622 -170821932 - MLT1A1 LTR MaLR 0 365 1 3440 172 103 28 chr6 18457622 18458067 -170821487 - L1MB8 LINE L1 -42 6136 5607 2520 73 0 0 chr6 18458067 18458370 -170821184 + AluY SINE Alu 1 303 -8 3440 172 103 28 chr6 18458370 18458632 -170820922 - L1MB8 LINE L1 -571 5607 5366 309 210 63 112 chr6 18458678 18458745 -170820809 + L1ME4a LINE L1 5984 6053 -68 1756 206 7 51 chr6 18458745 18459158 -170820396 - MLT2C1 LTR ERVL -2 395 1 309 210 63 112 chr6 18459158 18459206 -170820348 + L1ME4a LINE L1 6053 6093 -28 922 135 0 0 chr6 18459206 18459339 -170820215 - FLAM_C SINE Alu 0 133 1 309 210 63 112 chr6 18459339 18459365 -170820189 + L1ME4a LINE L1 6093 6119 -2 322 179 0 0 chr6 18459503 18459559 -170819995 - MLT1D LTR MaLR 0 505 450 3946 114 0 20 chr6 18459559 18459832 -170819722 - MER1A DNA MER1_type -2173 527 269 2439 82 0 3 chr6 18459832 18460137 -170819417 - AluSq SINE Alu -9 304 1 3946 114 0 20 chr6 18460137 18460399 -170819155 - MER1A DNA MER1_type -2431 269 3 204 40 0 0 chr6 18460944 18460969 -170818585 + (A)n Simple_repeat Simple_repeat 1 25 0 2253 114 0 0 chr6 18462019 18462308 -170817246 - AluSx SINE Alu -20 292 4 2509 194 52 40 chr6 18462367 18462636 -170816918 - L1MD3 LINE L1 0 8042 7778 2319 102 0 0 chr6 18462636 18462940 -170816614 - AluSq SINE Alu -9 304 1 2509 194 52 40 chr6 18462940 18463239 -170816315 - L1MD3 LINE L1 -264 7778 7480 2118 107 7 17 chr6 18463239 18463538 -170816016 - AluSx SINE Alu -4 308 13 2509 194 52 40 chr6 18463538 18463621 -170815933 - L1MD3 LINE L1 -562 7480 7400 226 273 104 22 chr6 18463628 18463811 -170815743 - L1MB8 LINE L1 -949 5197 5000 * 492 216 72 12 chr6 18463799 18464031 -170815523 + L1ME4a LINE L1 5820 6119 -2 601 291 64 13 chr6 18464327 18464561 -170814993 + MIR SINE MIR 17 262 0 195 100 0 0 chr6 18464899 18464929 -170814625 + (TG)n Simple_repeat Simple_repeat 2 31 0 2137 124 13 0 chr6 18464995 18465294 -170814260 + AluSq SINE Alu 3 305 -8 2124 116 82 25 chr6 18466498 18466851 -170812703 + THE1C LTR MaLR 3 375 0 238 333 13 0 chr6 18466969 18467047 -170812507 - L2 LINE L2 -1 3312 3234 815 86 103 0 chr6 18467075 18467192 -170812362 + L1MA6 LINE L1 6171 6299 -1 2144 138 0 0 chr6 18467435 18467732 -170811822 - AluSg SINE Alu -13 297 1 303 233 0 35 chr6 18467884 18467970 -170811584 + A-rich Low_complexity Low_complexity 2 84 0 564 230 79 0 chr6 18469035 18469200 -170810354 + MER5B DNA MER1_type 1 178 0 26 50 0 0 chr6 18469559 18469599 -170809955 + AT_rich Low_complexity Low_complexity 1 40 0 1889 151 6 19 chr6 18470287 18470598 -170808956 + AluJb SINE Alu 1 307 -5 735 227 0 0 chr6 18470607 18470739 -170808815 + FLAM_C SINE Alu 2 133 0 333 0 0 0 chr6 18471606 18471643 -170807911 + (TA)n Simple_repeat Simple_repeat 2 38 0 953 120 8 15 chr6 18471654 18471787 -170807767 - FLAM_C SINE Alu 0 133 2 262 276 61 10 chr6 18472413 18472511 -170807043 - MIR3 SINE MIR -7 201 99 285 292 25 75 chr6 18472764 18472840 -170806714 - MIR SINE MIR -108 154 89 2401 86 0 0 chr6 18472840 18473144 -170806410 + AluSx SINE Alu 2 305 -7 285 292 25 75 chr6 18473144 18473228 -170806326 - MIR SINE MIR -173 89 2 278 303 56 41 chr6 18473421 18473616 -170805938 + L1ME4a LINE L1 5835 6032 -89 21 82 0 0 chr6 18473659 18473708 -170805846 + AT_rich Low_complexity Low_complexity 1 49 0 1942 129 4 4 chr6 18474268 18474582 -170804972 - AluJb SINE Alu 0 316 3 1508 184 3 70 chr6 18474931 18475134 -170804420 - AluJo SINE Alu -7 305 131 2603 47 0 0 chr6 18475134 18475435 -170804119 + AluY SINE Alu 1 301 -10 1508 184 3 70 chr6 18475435 18475558 -170803996 - AluJo SINE Alu -181 131 1 216 255 0 0 chr6 18475977 18476028 -170803526 + L2 LINE L2 3149 3199 -73 1583 153 33 4 chr6 18477244 18477486 -170802068 - AluJb SINE Alu -15 297 49 918 66 33 0 chr6 18477488 18477610 -170801944 + Charlie3 DNA MER1_type 375 500 -2210 * 3600 77 4 11 chr6 18477604 18478072 -170801482 + Charlie3 DNA MER1_type 2242 2706 -4 236 261 210 17 chr6 18478198 18478317 -170801237 + MIR SINE MIR 66 207 -55 14734 178 18 23 chr6 18478328 18482474 -170797080 + L1PA16 LINE L1 912 5021 -1848 2433 84 0 0 chr6 18482474 18482773 -170796781 + AluY SINE Alu 1 299 -12 14734 178 18 23 chr6 18482773 18484612 -170794942 + L1PA16 LINE L1 5021 6867 -2 2332 91 7 0 chr6 18485062 18485359 -170794195 + AluY SINE Alu 1 299 -12 192 254 32 0 chr6 18485740 18485803 -170793751 - MIR SINE MIR -123 139 75 22 0 0 0 chr6 18486310 18486332 -170793222 + AT_rich Low_complexity Low_complexity 1 22 0 2371 78 3 0 chr6 18486820 18487116 -170792438 + AluY SINE Alu 1 297 -14 5797 126 29 3 chr6 18487182 18488367 -170791187 - L1PB1 LINE L1 0 6151 4938 11263 102 60 6 chr6 18488408 18488453 -170791101 - L1PBa LINE L1 -3738 3124 3083 2103 107 0 4 chr6 18488453 18488784 -170790770 - AluSg SINE Alu 0 330 1 11263 102 60 6 chr6 18488784 18491561 -170787993 - L1PBa LINE L1 -3779 3083 4 250 256 73 0 chr6 18491638 18491720 -170787834 - L1ME LINE L1 -223 5898 5811 6382 96 0 14 chr6 18492628 18493875 -170785679 - L1PA13 LINE L1 0 6163 4924 795 154 51 69 chr6 18493877 18494018 -170785536 + MER5A DNA MER1_type 8 147 -42 1841 169 0 3 chr6 18494018 18494313 -170785241 - AluJb SINE Alu -18 294 1 795 154 51 69 chr6 18494313 18494346 -170785208 + MER5A DNA MER1_type 147 179 -10 2221 85 0 7 chr6 18494571 18494865 -170784689 + AluSc SINE Alu 1 292 -17 21 71 0 0 chr6 18495072 18495114 -170784440 + AT_rich Low_complexity Low_complexity 1 42 0 3479 208 62 29 chr6 18495150 18495967 -170783587 - MER21B LTR ERV1 -1 862 19 414 188 10 89 chr6 18495964 18496065 -170783489 - MER21B LTR ERV1 -756 107 15 * 33 18 0 36 chr6 18496156 18496195 -170783359 + AT_rich Low_complexity Low_complexity 1 39 -14 2484 68 0 0 chr6 18496195 18496490 -170783064 - AluY SINE Alu -16 295 1 33 18 0 36 chr6 18496490 18496505 -170783049 + AT_rich Low_complexity Low_complexity 39 53 0 2111 134 0 0 chr6 18496520 18496819 -170782735 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 18497163 18497185 -170782369 + AT_rich Low_complexity Low_complexity 1 22 0 215 30 0 30 chr6 18497494 18497527 -170782027 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 283 249 84 89 chr6 18498422 18498780 -170780774 - HAL1 LINE L1 -868 1639 1284 262 284 52 26 chr6 18499635 18499751 -170779803 - L1M4 LINE L1 -2228 3918 3800 378 329 147 35 chr6 18499763 18500314 -170779240 - MLT1L LTR MaLR -2 613 1 234 0 0 0 chr6 18500342 18500368 -170779186 + (TG)n Simple_repeat Simple_repeat 2 27 0 931 115 0 0 chr6 18500368 18500490 -170779064 - AluSp SINE Alu -191 122 2 2414 86 0 0 chr6 18500490 18500790 -170778764 - AluSq SINE Alu -8 305 6 918 136 30 12 chr6 18501163 18501332 -170778222 - L1MD1 LINE L1 -44 6198 6027 533 108 69 10 chr6 18501345 18501447 -170778107 - L1MB2 LINE L1 -2 6169 6062 636 220 0 0 chr6 18502002 18502143 -170777411 + L2 LINE L2 620 760 -2554 2902 261 84 51 chr6 18502273 18503028 -170776526 + L2 LINE L2 1560 2289 -1024 270 0 0 0 chr6 18503028 18503058 -170776496 + (CA)n Simple_repeat Simple_repeat 2 31 0 2191 145 20 0 chr6 18503058 18503410 -170776144 - L1PB3 LINE L1 -1 6153 5795 2902 261 84 51 chr6 18503410 18504088 -170775466 + L2 LINE L2 2289 2943 -370 2426 90 0 3 chr6 18504088 18504399 -170775155 - AluSg SINE Alu 0 310 1 1816 161 0 3 chr6 18504400 18504686 -170774868 - AluJo SINE Alu -17 295 11 2902 261 84 51 chr6 18504686 18504933 -170774621 + L2 LINE L2 2942 3313 0 1720 158 79 20 chr6 18505526 18505880 -170773674 + THE1C LTR MaLR 1 375 0 392 338 51 56 chr6 18506234 18506666 -170772888 - L2 LINE L2 -7 3265 2836 790 238 16 0 chr6 18506784 18506969 -170772585 + MER5A DNA MER1_type 1 188 -1 405 323 79 18 chr6 18507469 18507633 -170771921 + MER5B DNA MER1_type 3 176 -2 2088 112 32 0 chr6 18508010 18508295 -170771259 + AluSx SINE Alu 1 294 -18 421 222 6 29 chr6 18508295 18508466 -170771088 + GA-rich Low_complexity Low_complexity 1 167 0 607 132 26 26 chr6 18508677 18508791 -170770763 + AluSg/x SINE Alu 196 309 -1 1164 156 47 19 chr6 18508801 18509012 -170770542 + MSTB LTR MaLR 210 426 0 765 146 8 23 chr6 18509230 18509360 -170770194 - FLAM_C SINE Alu -14 129 2 2040 155 0 16 chr6 18509836 18510153 -170769401 + AluSx SINE Alu 1 312 0 1161 283 27 24 chr6 18610184 18610632 -170668922 - L2 LINE L2 -80 3233 2778 1639 127 37 40 chr6 18610695 18610994 -170668560 + AluSg SINE Alu 1 298 -12 2310 74 0 7 chr6 18610996 18611306 -170668248 + AluY SINE Alu 3 310 -1 1981 127 14 0 chr6 18611331 18611623 -170667931 + AluSx SINE Alu 1 296 -16 1349 261 124 13 chr6 18611624 18612172 -170667382 + L2 LINE L2 1413 2021 -1293 284 103 0 0 chr6 18612201 18612240 -170667314 - MLT1A1 LTR MaLR 0 374 336 816 107 0 0 chr6 18612242 18612354 -170667200 + AluSg/x SINE Alu 86 197 -113 1274 159 103 43 chr6 18612357 18612497 -170667057 - MLT1A1 LTR MaLR -45 320 190 1619 173 18 0 chr6 18612497 18612774 -170666780 - AluJo SINE Alu -27 285 4 1274 159 103 43 chr6 18612774 18612935 -170666619 - MLT1A1 LTR MaLR -175 190 1 282 273 84 65 chr6 18612936 18613090 -170666464 + L2 LINE L2 2077 2233 -1081 415 246 85 15 chr6 18613097 18613227 -170666327 - MLT1I LTR MaLR -13 396 258 1804 134 28 3 chr6 18613243 18613533 -170666021 - AluSg1 SINE Alu -12 297 1 2217 84 3 7 chr6 18613547 18613843 -170665711 - AluSp SINE Alu -18 295 1 652 199 58 53 chr6 18613856 18613998 -170665556 - MLT1I LTR MaLR -237 172 27 2008 129 3 0 chr6 18613998 18614292 -170665262 + AluSq SINE Alu 1 295 -18 652 199 58 53 chr6 18614292 18614320 -170665234 - MLT1I LTR MaLR -382 27 1 352 316 0 0 chr6 18614322 18614420 -170665134 + L2 LINE L2 2232 2329 -985 2127 114 3 0 chr6 18614424 18614723 -170664831 + AluSp SINE Alu 1 300 -13 618 236 211 5 chr6 18614730 18614929 -170664625 - MIR SINE MIR -14 248 9 316 316 105 42 chr6 18616061 18616251 -170663303 - MIR3 SINE MIR -6 202 1 2238 106 0 0 chr6 18616505 18616817 -170662737 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 18616942 18616964 -170662590 + AT_rich Low_complexity Low_complexity 1 22 0 700 301 59 34 chr6 18617047 18617456 -170662098 + MLT1H1 LTR MaLR 10 533 -57 1749 148 33 7 chr6 18617459 18617763 -170661791 + AluSx SINE Alu 1 312 0 1655 88 0 5 chr6 18617782 18617998 -170661556 + AluSx SINE Alu 3 217 -95 402 139 0 14 chr6 18618098 18618170 -170661384 + AluSp/q SINE Alu 235 305 -8 237 125 0 0 chr6 18618170 18618210 -170661344 - Tigger1 DNA MER2_type -170 2248 2209 * 750 202 42 12 chr6 18618197 18618365 -170661189 - Tigger1 DNA MER2_type -2245 173 1 243 308 31 23 chr6 18618468 18618598 -170660956 + L2 LINE L2 2259 2389 -925 499 188 119 0 chr6 18618865 18618923 -170660631 + MLT2B3 LTR ERVL 442 492 -62 457 88 25 0 chr6 18618923 18619003 -170660551 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 499 188 119 0 chr6 18619003 18619045 -170660509 + MLT2B3 LTR ERVL 492 554 0 5509 223 54 22 chr6 18619045 18619081 -170660473 + HERVL-B3 LTR ERVL 1 34 -5620 2052 112 7 0 chr6 18619081 18619375 -170660179 - AluSp SINE Alu -17 296 1 5509 223 54 22 chr6 18619375 18619640 -170659914 + HERVL-B3 LTR ERVL 34 289 -5365 4840 98 1 52 chr6 18619640 18620365 -170659189 - LTR12 LTR ERV1 0 688 1 5509 223 54 22 chr6 18620365 18621387 -170658167 + HERVL-B3 LTR ERVL 289 1368 -4286 427 264 160 0 chr6 18621549 18621693 -170657861 - MIR3 SINE MIR -1 207 41 183 42 0 0 chr6 18621707 18621731 -170657823 + (CA)n Simple_repeat Simple_repeat 2 25 0 1905 130 27 0 chr6 18621831 18622130 -170657424 + AluSx SINE Alu 1 307 -5 432 248 103 0 chr6 18622171 18622288 -170657266 + MIR SINE MIR 82 210 -52 371 268 67 22 chr6 18622290 18622390 -170657164 - MLT1L LTR MaLR -2 613 519 2303 88 0 3 chr6 18622390 18622695 -170656859 + AluY SINE Alu 1 304 -7 371 268 67 22 chr6 18622695 18622857 -170656697 - MLT1L LTR MaLR -96 519 228 1693 164 20 13 chr6 18624439 18624743 -170654811 - AluJb SINE Alu -6 306 1 215 293 98 24 chr6 18624807 18624889 -170654665 - L2 LINE L2 -32 3240 3153 292 359 33 0 chr6 18625092 18625184 -170654370 + MIR SINE MIR 88 182 -80 2269 84 0 3 chr6 18625874 18626170 -170653384 - AluSc SINE Alu -14 295 1 968 179 0 16 chr6 18626187 18626371 -170653183 + FRAM SINE Alu 1 176 0 1090 120 0 0 chr6 18626646 18626804 -170652750 - AluSg/x SINE Alu -17 295 138 1259 320 128 16 chr6 18626916 18627669 -170651885 + L3 LINE CR1 619 1455 -122 2188 94 0 0 chr6 18627869 18628157 -170651397 + AluSg SINE Alu 1 288 -22 1724 161 7 0 chr6 18628789 18629087 -170650467 - AluJo SINE Alu -12 300 1 1077 132 0 0 chr6 18629095 18629254 -170650300 - AluSg/x SINE Alu -20 290 132 1376 113 154 30 chr6 18629254 18629520 -170650034 - AluSg1 SINE Alu -10 299 1 257 218 333 39 chr6 18630096 18630252 -170649302 + MIR SINE MIR 53 254 -8 937 135 0 0 chr6 18630404 18630537 -170649017 + FLAM_C SINE Alu 1 133 0 382 246 62 142 chr6 18630755 18630795 -170648759 + L2 LINE L2 2675 2717 -596 2222 74 10 3 chr6 18630795 18631092 -170648462 + AluSc SINE Alu 1 299 -10 2459 62 0 3 chr6 18631092 18631401 -170648153 + AluY SINE Alu 1 308 -3 382 246 62 142 chr6 18631401 18631808 -170647746 + L2 LINE L2 2715 3087 -226 1934 129 0 14 chr6 18632040 18632360 -170647194 - AluSq SINE Alu 0 316 1 326 0 68 0 chr6 18632367 18632411 -170647143 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 1473 197 3 19 chr6 18632434 18632743 -170646811 - AluJo SINE Alu -8 304 1 2123 93 7 0 chr6 18632909 18633199 -170646355 - AluSc SINE Alu -17 292 1 1958 108 3 48 chr6 18633680 18633994 -170645560 - AluJb SINE Alu -12 300 1 423 182 45 0 chr6 18634217 18634305 -170645249 + MER69 DNA AcHobo 10 101 -1125 796 226 100 42 chr6 18634408 18634669 -170644885 + MER21B LTR ERV1 526 801 -62 373 206 93 21 chr6 18634776 18634873 -170644681 - MSTA LTR MaLR -202 226 123 2138 319 85 40 chr6 18635222 18635301 -170644253 - HERVL LTR ERVL -1442 4212 4138 1933 145 134 31 chr6 18635301 18635688 -170643866 + MSTA LTR MaLR 1 427 -1 2138 319 85 40 chr6 18635688 18636051 -170643503 - HERVL LTR ERVL -1516 4138 3793 2558 45 0 0 chr6 18636051 18636360 -170643194 - AluYa5 SINE Alu -2 309 1 2138 319 85 40 chr6 18636360 18637345 -170642209 - HERVL LTR ERVL -1861 3793 2719 848 242 58 51 chr6 18637349 18637714 -170641840 - L1MEc LINE L1 -4557 2321 1960 1830 130 6 22 chr6 18637714 18638030 -170641524 + AluSx SINE Alu 1 311 -1 848 242 58 51 chr6 18638030 18638193 -170641361 - L1MEc LINE L1 -4918 1960 1369 313 248 83 25 chr6 18638297 18638418 -170641136 - L1MEc LINE L1 -5628 1510 1383 622 330 32 16 chr6 18638672 18638987 -170640567 - L1MEc LINE L1 -5969 1169 850 2291 46 39 0 chr6 18639000 18639283 -170640271 - AluY SINE Alu -17 294 1 2039 218 32 43 chr6 18639434 18639989 -170639565 - L1ME1 LINE L1 -44 6191 5643 1667 262 75 28 chr6 18639991 18640482 -170639072 - L1ME1 LINE L1 -3167 3048 2503 1521 211 7 3 chr6 18640482 18640786 -170638768 - AluJb SINE Alu -7 305 1 1667 262 75 28 chr6 18640786 18641093 -170638461 - L1ME1 LINE L1 -3712 2503 2212 248 232 232 16 chr6 18641139 18641333 -170638221 - L1ME1 LINE L1 -4115 2281 2046 2269 77 0 35 chr6 18641334 18641644 -170637910 + AluSx SINE Alu 1 299 -13 340 250 89 109 chr6 18641927 18642163 -170637391 + L1MEd LINE L1 538 777 -5342 1591 154 14 20 chr6 18642163 18642492 -170637062 - AluSx SINE Alu 0 327 1 340 250 89 109 chr6 18642492 18642633 -170636921 + L1MEd LINE L1 777 919 -5200 1583 189 0 3 chr6 18642633 18642930 -170636624 + AluJo SINE Alu 1 296 -16 340 250 89 109 chr6 18642930 18643120 -170636434 + L1MEd LINE L1 919 1097 -5022 2062 75 0 34 chr6 18643122 18643462 -170636092 + AluY SINE Alu 1 330 0 2177 98 3 0 chr6 18643476 18643772 -170635782 + AluSq SINE Alu 1 297 -16 6694 238 34 47 chr6 18644487 18646700 -170632854 + HERVFH21 LTR ERV1 304 2412 -4117 11788 161 19 7 chr6 18646826 18649108 -170630446 + HERVFH21 LTR ERV1 2290 4665 -1864 1956 128 14 0 chr6 18649292 18649581 -170629973 - AluSg SINE Alu -17 293 1 209 255 32 106 chr6 18649593 18649660 -170629894 - L2 LINE L2 -540 2774 2714 2095 102 7 0 chr6 18649660 18649953 -170629601 - AluSx SINE Alu -17 295 1 209 255 32 106 chr6 18649953 18649979 -170629575 - L2 LINE L2 -600 2714 2688 467 327 114 48 chr6 18649980 18650374 -170629180 + L1MEd LINE L1 1 420 -5699 2371 208 29 12 chr6 18650376 18650828 -170628726 + L1ME2 LINE L1 5526 6014 -154 2002 98 3 55 chr6 18650828 18651153 -170628401 + AluY SINE Alu 2 309 -2 2371 208 29 12 chr6 18651153 18651310 -170628244 + L1ME2 LINE L1 6014 6167 -1 390 297 52 57 chr6 18651645 18651837 -170627717 - L2 LINE L2 0 3313 3123 2257 103 0 0 chr6 18651849 18652160 -170627394 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr6 18652285 18652307 -170627247 + AT_rich Low_complexity Low_complexity 1 22 0 700 301 59 34 chr6 18652390 18652799 -170626755 + MLT1H1 LTR MaLR 10 533 -57 2321 81 3 10 chr6 18652802 18653098 -170626456 + AluSp SINE Alu 2 295 -18 1942 128 28 3 chr6 18653112 18653401 -170626153 + AluSg1 SINE Alu 1 296 -13 415 246 85 15 chr6 18653417 18653547 -170626007 + MLT1I LTR MaLR 258 396 -13 240 259 86 72 chr6 18653569 18653708 -170625846 - L2 LINE L2 -1097 2217 2077 1279 156 103 43 chr6 18653709 18653870 -170625684 + MLT1A1 LTR MaLR 1 151 -214 1735 173 18 0 chr6 18653870 18654147 -170625407 + AluJo SINE Alu 4 285 -27 1279 156 103 43 chr6 18654147 18654287 -170625267 + MLT1A1 LTR MaLR 151 320 -45 864 107 0 0 chr6 18654290 18654402 -170625152 - AluSg/x SINE Alu -113 197 86 286 103 0 0 chr6 18654404 18654443 -170625111 + MLT1A1 LTR MaLR 336 374 0 1172 256 125 13 chr6 18654472 18655015 -170624539 - L2 LINE L2 -1293 2021 1418 2105 127 14 0 chr6 18655021 18655313 -170624241 - AluSx SINE Alu -16 296 1 1755 74 4 9 chr6 18655338 18655569 -170623985 - AluY SINE Alu -1 310 81 2222 114 0 7 chr6 18655946 18656254 -170623300 - AluSx SINE Alu -6 306 1 268 312 104 32 chr6 18656596 18656846 -170622708 + MLT1L LTR MaLR 302 569 -46 2265 108 0 0 chr6 18656857 18657164 -170622390 - AluY SINE Alu -4 307 1 2438 74 6 10 chr6 18657241 18657553 -170622001 - AluY SINE Alu 0 311 1 2243 128 0 0 chr6 18657575 18657880 -170621674 - AluSx SINE Alu -5 307 3 2254 248 13 6 chr6 18657928 18658476 -170621078 - L1ME1 LINE L1 -140 6026 5475 673 254 65 14 chr6 18659171 18659388 -170620166 + MIR SINE MIR 24 251 -11 277 273 0 30 chr6 18659433 18659532 -170620022 + L1ME LINE L1 5730 5825 -296 1979 80 53 4 chr6 18659764 18660026 -170619528 + AluSc SINE Alu 20 294 -15 1556 164 25 29 chr6 18660134 18660408 -170619146 + AluJo SINE Alu 11 283 -29 2473 64 3 3 chr6 18660898 18661194 -170618360 + AluSx SINE Alu 1 296 -16 24 67 0 0 chr6 18661205 18661250 -170618304 + AT_rich Low_complexity Low_complexity 1 45 0 2113 313 26 26 chr6 18662703 18663731 -170615823 + HERVFH21 LTR ERV1 5502 6529 0 801 179 105 83 chr6 18663761 18664124 -170615430 + LTR21B LTR ERV1 68 438 0 739 278 76 4 chr6 18664265 18664585 -170614969 + MLT1I LTR MaLR 21 363 -46 2104 51 94 0 chr6 18665396 18665651 -170613903 + AluY SINE Alu 1 279 -32 341 58 19 0 chr6 18665651 18665703 -170613851 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 227 278 72 10 chr6 18665755 18665852 -170613702 + L2 LINE L2 1241 1343 -1971 * 1023 291 40 24 chr6 18665848 18666270 -170613284 - L2 LINE L2 -80 3233 2805 2518 61 0 0 chr6 18666359 18666656 -170612898 + AluY SINE Alu 1 297 -14 1365 95 0 0 chr6 18666657 18666825 -170612729 + AluSg/x SINE Alu 134 301 -11 1596 150 44 47 chr6 18667001 18667136 -170612418 - MER44D DNA MER2_type -1882 609 475 2103 102 7 14 chr6 18667136 18667430 -170612124 + AluSx SINE Alu 1 292 -20 1596 150 44 47 chr6 18667430 18667534 -170612020 - MER44D DNA MER2_type -2016 475 372 180 0 0 0 chr6 18667534 18667554 -170612000 + (TC)n Simple_repeat Simple_repeat 1 20 0 1596 150 44 47 chr6 18667554 18667652 -170611902 - MER44D DNA MER2_type -2119 372 2 249 231 15 0 chr6 18667656 18667721 -170611833 - L1M4c LINE L1 -5012 1372 1307 26 0 0 0 chr6 18667724 18667750 -170611804 + AT_rich Low_complexity Low_complexity 1 26 0 1115 129 8 133 chr6 18667906 18667945 -170611609 - L1MA7 LINE L1 -115 6176 6134 1862 142 9 41 chr6 18667945 18668263 -170611291 - AluJb SINE Alu -4 308 1 1115 129 8 133 chr6 18668263 18668486 -170611068 - L1MA7 LINE L1 -157 6134 5947 1717 151 63 6 chr6 18668568 18668699 -170610855 - L1MA7 LINE L1 -360 5931 5809 198 0 0 0 chr6 18668699 18668721 -170610833 + (TG)n Simple_repeat Simple_repeat 1 22 0 1717 151 63 6 chr6 18668721 18668906 -170610648 - L1MA7 LINE L1 -482 5809 5597 190 230 223 50 chr6 18669330 18669469 -170610085 - MIR SINE MIR -47 215 53 2103 191 26 26 chr6 18669479 18669548 -170610006 - MSTB LTR MaLR -2 424 356 2368 90 0 13 chr6 18669548 18669860 -170609694 + AluY SINE Alu 1 308 -3 2103 191 26 26 chr6 18669860 18670214 -170609340 - MSTB LTR MaLR -69 357 1 2486 68 3 7 chr6 18670632 18670940 -170608614 - AluY SINE Alu -4 307 1 186 43 0 0 chr6 18671271 18671294 -170608260 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 100 3 21 chr6 18671294 18671583 -170607971 - AluY SINE Alu -27 284 1 2089 122 10 0 chr6 18672160 18672456 -170607098 + AluSx SINE Alu 1 299 -13 1195 165 78 0 chr6 18672466 18672696 -170606858 + L1MB3 LINE L1 5893 6140 -43 1451 103 5 9 chr6 18672699 18672912 -170606642 + AluY SINE Alu 1 212 -99 201 349 151 8 chr6 18673102 18673228 -170606326 - L2 LINE L2 -12 3260 3117 1526 147 23 30 chr6 18674766 18675031 -170604523 + AluJo SINE Alu 25 287 -25 629 68 91 0 chr6 18675129 18675217 -170604337 - FLAM_C SINE Alu -13 130 35 204 40 0 0 chr6 18675446 18675471 -170604083 + (TA)n Simple_repeat Simple_repeat 2 26 0 2527 59 0 0 chr6 18675471 18675761 -170603793 - AluY SINE Alu -19 292 3 1041 84 30 0 chr6 18676058 18676189 -170603365 - AluJb SINE Alu -177 135 1 34 24 0 0 chr6 18676288 18676329 -170603225 + AT_rich Low_complexity Low_complexity 1 41 0 1804 126 7 7 chr6 18676806 18677083 -170602471 - Tigger5 DNA MER2_type 0 2323 2047 2183 113 6 25 chr6 18677220 18677538 -170602016 + AluSx SINE Alu 1 312 0 2487 82 3 0 chr6 18678141 18678447 -170601107 - AluSx SINE Alu -5 307 1 2214 108 0 3 chr6 18678705 18679002 -170600552 + AluSx SINE Alu 1 296 -16 204 254 0 34 chr6 18679433 18679492 -170600062 + L2 LINE L2 3257 3313 0 651 134 0 59 chr6 18679628 18679747 -170599807 - AluSg/x SINE Alu -4 306 195 2270 102 0 28 chr6 18679920 18680242 -170599312 + AluSq SINE Alu 1 313 0 2299 187 59 17 chr6 18680275 18680734 -170598820 + MER66A LTR ERV1 1 478 0 2234 82 0 7 chr6 18681026 18681306 -170598248 - AluSc SINE Alu -8 301 24 539 100 0 0 chr6 18682090 18682160 -170597394 + AluS SINE Alu 2 71 -242 1180 139 0 0 chr6 18682160 18682333 -170597221 + AluSc SINE Alu 131 303 -6 184 336 148 18 chr6 18682405 18682628 -170596926 + L2 LINE L2 2811 3062 -210 292 220 184 137 chr6 18682879 18682985 -170596569 - MER5A DNA MER1_type 0 189 71 2241 117 0 0 chr6 18682985 18683292 -170596262 - AluSx SINE Alu -1 311 5 292 220 184 137 chr6 18683292 18683353 -170596201 - MER5A DNA MER1_type -118 71 14 226 351 8 61 chr6 18683465 18683596 -170595958 + L2 LINE L2 3141 3264 -8 2326 77 3 17 chr6 18683690 18683990 -170595564 - AluY SINE Alu -15 296 1 1974 144 0 7 chr6 18684730 18685021 -170594533 + AluJb SINE Alu 18 306 -6 2055 143 0 13 chr6 18686185 18686499 -170593055 + AluJb SINE Alu 1 310 -2 35 71 0 0 chr6 18686821 18686891 -170592663 + AT_rich Low_complexity Low_complexity 1 70 0 2231 106 0 0 chr6 18687195 18687504 -170592050 - AluSq SINE Alu 0 309 1 584 197 61 14 chr6 18687513 18687660 -170591894 - MER112 DNA MER1_type -11 249 96 1270 122 0 0 chr6 18688505 18688693 -170590861 - L1PB1 LINE L1 -2 6149 5962 354 173 40 13 chr6 18688776 18688851 -170590703 - L2 LINE L2 -2 3270 3194 2342 134 3 21 chr6 18689485 18689865 -170589689 - L1PA16 LINE L1 -1 6165 5793 2112 115 28 0 chr6 18689912 18690200 -170589354 - AluSx SINE Alu -16 296 1 2244 110 3 7 chr6 18690348 18690657 -170588897 - AluSx SINE Alu -4 308 1 2136 118 7 0 chr6 18690754 18691041 -170588513 - AluSx SINE Alu -23 289 1 23 0 0 0 chr6 18691315 18691338 -170588216 + AT_rich Low_complexity Low_complexity 1 23 0 204 237 51 0 chr6 18692522 18692581 -170586973 + MIR SINE MIR 201 262 0 203 254 16 32 chr6 18692601 18692664 -170586890 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 2001 137 0 19 chr6 18692705 18693012 -170586542 - AluJo SINE Alu -8 304 4 2188 138 0 6 chr6 18693369 18693680 -170585874 + AluSx SINE Alu 1 309 -3 792 134 6 56 chr6 18694783 18694962 -170584592 - L1MB8 LINE L1 -6 6172 6003 2241 127 15 46 chr6 18695041 18695434 -170584120 - L1MB8 LINE L1 -190 5994 5614 2291 97 10 0 chr6 18695438 18695727 -170583827 - AluSx SINE Alu -20 292 1 23 0 0 0 chr6 18695854 18695877 -170583677 + AT_rich Low_complexity Low_complexity 1 23 0 2325 86 3 26 chr6 18696068 18696370 -170583184 + AluSc SINE Alu 1 295 -14 1960 115 54 0 chr6 18698473 18698752 -170580802 - AluSx SINE Alu -18 294 1 1387 192 17 31 chr6 18698924 18699216 -170580338 + AluJo SINE Alu 1 288 -24 682 185 19 45 chr6 18699549 18699706 -170579848 - MER5B DNA MER1_type 0 178 26 391 274 211 5 chr6 18699857 18700061 -170579493 + MIR SINE MIR 17 262 0 459 239 96 16 chr6 18700252 18700382 -170579172 - MER112 DNA MER1_type -50 210 59 201 39 0 0 chr6 18700382 18700408 -170579146 + (TG)n Simple_repeat Simple_repeat 2 27 0 459 239 96 16 chr6 18700408 18700465 -170579089 - MER112 DNA MER1_type -201 59 8 347 225 63 27 chr6 18700475 18700586 -170578968 - MIR3 SINE MIR -51 157 43 576 339 16 8 chr6 18700692 18700934 -170578620 + MIR SINE MIR 13 256 -6 1550 107 154 136 chr6 18701301 18701497 -170578057 + MLT1B LTR MaLR 1 192 -198 2085 110 37 20 chr6 18701497 18701796 -170577758 - AluSq SINE Alu -9 304 1 1550 107 154 136 chr6 18701796 18701982 -170577572 + MLT1B LTR MaLR 192 390 0 266 271 42 28 chr6 18703651 18703795 -170575759 - L1ME4a LINE L1 0 6121 5976 319 28 0 0 chr6 18703813 18703849 -170575705 + U2 snRNA snRNA 1 36 -152 901 56 0 0 chr6 18704627 18704735 -170574819 + AluSc SINE Alu 172 279 -30 405 109 0 0 chr6 18704738 18704802 -170574752 + (TA)n Simple_repeat Simple_repeat 2 65 0 297 0 0 0 chr6 18705241 18705274 -170574280 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1719 134 7 11 chr6 18705274 18705550 -170574004 - AluJo SINE Alu -32 280 6 2366 95 0 0 chr6 18705702 18705998 -170573556 - AluSx SINE Alu -8 304 9 2308 67 0 3 chr6 18706094 18706420 -170573134 + AluY SINE Alu 1 325 0 837 182 0 0 chr6 18708498 18708630 -170570924 + FLAM_C SINE Alu 2 133 0 343 278 99 13 chr6 18708707 18708858 -170570696 - MER103 DNA DNA -2 164 1 2041 261 66 46 chr6 18709808 18709940 -170569614 - L2 LINE L2 -1 3312 3184 1940 194 88 50 chr6 18709940 18710441 -170569113 - MLT2B1 LTR ERVL 0 520 1 2041 261 66 46 chr6 18710441 18711264 -170568290 - L2 LINE L2 -129 3184 2326 383 267 176 0 chr6 18712191 18712378 -170567176 - L2 LINE L2 -16 3297 3078 532 302 104 31 chr6 18713246 18713468 -170566086 - MIR SINE MIR -6 256 19 2028 227 126 31 chr6 18714550 18715250 -170564304 - MER20B DNA MER1_type -12 771 6 395 284 95 0 chr6 18715287 18715403 -170564151 + L2 LINE L2 3146 3272 0 2285 114 0 0 chr6 18715664 18715971 -170563583 - AluSg SINE Alu -3 307 1 200 293 52 17 chr6 18716164 18716222 -170563332 + MIR SINE MIR 25 84 -124 238 261 62 0 chr6 18716433 18716498 -170563056 - MIR SINE MIR -76 186 118 828 197 0 14 chr6 18716915 18717062 -170562492 + AluJo SINE Alu 1 145 -167 1505 147 47 0 chr6 18717071 18717153 -170562401 + AluJo SINE Alu 39 116 -190 207 0 0 0 chr6 18717153 18717176 -170562378 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1505 147 47 0 chr6 18717176 18717350 -170562204 + AluJo SINE Alu 116 306 0 2307 77 0 3 chr6 18717352 18717670 -170561884 + AluSq SINE Alu 1 317 0 251 277 46 0 chr6 18717981 18718046 -170561508 + L2 LINE L2 3246 3313 0 1896 145 7 7 chr6 18718503 18718799 -170560755 - AluJb SINE Alu -16 296 1 818 177 0 0 chr6 18718935 18719059 -170560495 - FLAM_A SINE Alu -9 124 1 2341 195 17 25 chr6 18722220 18722585 -170556969 + MLT1C LTR MaLR 1 363 -104 2279 44 68 14 chr6 18722585 18722878 -170556676 - AluSc SINE Alu 0 309 1 2341 195 17 25 chr6 18722878 18722983 -170556571 + MLT1C LTR MaLR 363 467 0 2073 80 31 77 chr6 18724033 18724358 -170555196 + AluSq SINE Alu 2 311 -2 2540 54 0 19 chr6 18725208 18725522 -170554032 + AluY SINE Alu 1 308 -3 268 268 8 8 chr6 18725539 18725666 -170553888 + CT-rich Low_complexity Low_complexity 3 129 0 1759 174 0 36 chr6 18726677 18726981 -170552573 + AluSx SINE Alu 1 293 -19 231 120 53 27 chr6 18727065 18727140 -170552414 + (TA)n Simple_repeat Simple_repeat 2 78 0 2359 74 10 16 chr6 18727949 18728261 -170551293 + AluSx SINE Alu 1 310 -2 2428 95 0 0 chr6 18729904 18730208 -170549346 - AluSg SINE Alu -6 304 1 225 0 0 0 chr6 18730912 18730937 -170548617 + (A)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr6 18731164 18731192 -170548362 + AT_rich Low_complexity Low_complexity 1 28 0 2843 3 0 0 chr6 18732769 18733070 -170546484 - AluYa5 SINE Alu -10 301 1 2490 54 3 0 chr6 18733277 18733572 -170545982 - AluY SINE Alu -15 296 1 714 271 200 8 chr6 18734358 18734723 -170544831 + MLT1J1 LTR MaLR 10 444 -2 471 226 0 9 chr6 18734765 18734871 -170544683 - MIR SINE MIR -70 192 88 226 356 0 14 chr6 18735010 18735083 -170544471 - MIR SINE MIR -177 85 14 414 53 0 0 chr6 18735675 18735732 -170543822 + (CA)n Simple_repeat Simple_repeat 2 58 0 180 0 0 0 chr6 18736072 18736092 -170543462 + (AGGTG)n Simple_repeat Simple_repeat 1 20 0 408 228 162 15 chr6 18736598 18736734 -170542820 - MER112 DNA MER1_type -8 252 97 3180 99 11 38 chr6 18736994 18737300 -170542254 + L1MA2 LINE L1 5843 6133 -171 2143 118 0 3 chr6 18737300 18737596 -170541958 + AluSg SINE Alu 1 295 -15 3180 99 11 38 chr6 18737596 18737764 -170541790 + L1MA2 LINE L1 6133 6304 0 977 119 7 7 chr6 18737809 18737952 -170541602 - MLT1E3 LTR MaLR -2 622 480 432 274 0 35 chr6 18738206 18738319 -170541235 + MLT1I LTR MaLR 292 400 -9 612 223 153 0 chr6 18738420 18738577 -170540977 + MER5A DNA MER1_type 9 189 0 954 186 11 0 chr6 18738670 18738847 -170540707 + MER5A DNA MER1_type 11 189 0 2809 156 4 24 chr6 18739054 18739521 -170540033 + LTR32 LTR ERVL 14 471 0 862 207 18 35 chr6 18739769 18739938 -170539616 + FRAM SINE Alu 1 166 0 689 290 0 0 chr6 18740475 18740637 -170538917 + MER5B DNA MER1_type 11 172 -6 24 0 0 0 chr6 18740820 18740844 -170538710 + AT_rich Low_complexity Low_complexity 1 24 0 377 273 40 0 chr6 18741402 18741501 -170538053 + MER5A DNA MER1_type 26 128 -61 3256 161 29 11 chr6 18742177 18742736 -170536818 + L1MB8 LINE L1 5610 6178 0 2590 61 0 3 chr6 18743100 18743412 -170536142 - AluY SINE Alu 0 311 1 25 0 0 0 chr6 18743415 18743440 -170536114 + AT_rich Low_complexity Low_complexity 1 25 0 2011 143 0 23 chr6 18743596 18743904 -170535650 + AluSx SINE Alu 1 301 -11 1990 155 0 3 chr6 18743947 18744256 -170535298 - AluJo SINE Alu -3 309 2 2312 238 125 29 chr6 18744394 18745321 -170534233 - HAL1b LINE L1 -290 1058 43 206 219 0 0 chr6 18746203 18746244 -170533310 + CT-rich Low_complexity Low_complexity 2 42 0 922 192 68 0 chr6 18748868 18749045 -170530509 - MER5A DNA MER1_type 0 189 1 3815 148 42 23 chr6 18749144 18749288 -170530266 - MER50 LTR ERV1 -23 711 571 2439 75 0 0 chr6 18749288 18749583 -170529971 + AluY SINE Alu 1 295 -16 3815 148 42 23 chr6 18749583 18750136 -170529418 - MER50 LTR ERV1 -163 571 1 187 356 159 38 chr6 18750162 18750294 -170529260 - MIR3 SINE MIR -42 166 19 210 302 62 0 chr6 18750783 18750879 -170528675 + L2 LINE L2 2791 2892 -422 1702 127 46 81 chr6 18750913 18751236 -170528318 + AluJb SINE Alu 1 312 0 185 327 83 71 chr6 18751384 18751552 -170528002 + L2 LINE L2 3073 3242 -30 273 254 112 37 chr6 18753112 18753246 -170526308 + L1ME4a LINE L1 5977 6120 -1 2317 88 0 0 chr6 18753313 18753608 -170525946 + AluSx SINE Alu 1 295 -17 197 233 96 68 chr6 18753610 18753683 -170525871 - L2 LINE L2 -19 3253 3179 24 0 0 0 chr6 18753867 18753891 -170525663 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 18754454 18754476 -170525078 + AT_rich Low_complexity Low_complexity 1 22 0 2398 71 3 0 chr6 18754773 18755067 -170524487 + AluY SINE Alu 1 295 -16 335 267 73 63 chr6 18755276 18755414 -170524140 + L1ME4a LINE L1 5538 5680 -2128 2224 117 0 7 chr6 18755414 18755723 -170523831 + AluSq SINE Alu 1 307 -6 335 267 73 63 chr6 18755723 18755790 -170523764 + L1ME4a LINE L1 5680 5745 -2063 237 315 14 0 chr6 18755838 18755911 -170523643 - MER96 DNA MER1_type? 0 175 102 295 275 6 75 chr6 18755993 18756061 -170523493 + L1ME4a LINE L1 5761 5832 -289 2249 96 10 0 chr6 18756061 18756354 -170523200 + AluSq SINE Alu 1 296 -17 295 275 6 75 chr6 18756354 18756445 -170523109 + L1ME4a LINE L1 5832 5909 -212 232 362 79 2 chr6 18757169 18757325 -170522229 + MIR SINE MIR 4 179 -83 2160 113 3 0 chr6 18757325 18757617 -170521937 + AluSx SINE Alu 1 293 -19 232 362 79 2 chr6 18757617 18757702 -170521852 + MIR SINE MIR 179 256 -6 1302 154 90 79 chr6 18757803 18758082 -170521472 + AluJo SINE Alu 1 282 -30 295 260 96 34 chr6 18758406 18758552 -170521002 - L1ME4a LINE L1 -4 6117 5963 776 197 98 38 chr6 18758965 18759229 -170520325 - MER5C DNA MER1_type -1 323 44 2162 122 0 0 chr6 18759716 18760002 -170519552 + AluSx SINE Alu 1 286 -26 360 0 0 0 chr6 18760278 18760318 -170519236 + (TG)n Simple_repeat Simple_repeat 1 40 0 2376 86 0 13 chr6 18760464 18760766 -170518788 - AluSc SINE Alu -11 298 1 22 0 0 0 chr6 18761108 18761130 -170518424 + AT_rich Low_complexity Low_complexity 1 22 0 219 36 0 0 chr6 18761528 18761556 -170517998 + (TG)n Simple_repeat Simple_repeat 2 29 0 995 186 6 0 chr6 18761854 18762021 -170517533 - FRAM SINE Alu -12 164 1 2060 133 3 0 chr6 18762106 18762399 -170517155 + AluSx SINE Alu 1 294 -18 708 188 0 0 chr6 18762399 18762516 -170517038 - AluJo/FLAM SINE Alu -194 118 2 22 0 0 0 chr6 18763177 18763199 -170516355 + AT_rich Low_complexity Low_complexity 1 22 0 2014 139 0 7 chr6 18763338 18763632 -170515922 + AluJb SINE Alu 1 292 -20 26 0 0 0 chr6 18763733 18763759 -170515795 + AT_rich Low_complexity Low_complexity 1 26 0 635 300 111 46 chr6 18763930 18764086 -170515468 + L1MC4a LINE L1 3810 3955 -2191 2857 69 0 0 chr6 18764086 18764446 -170515108 + L1PA6 LINE L1 5789 6148 -6 635 300 111 46 chr6 18764446 18764477 -170515077 + L1MC4a LINE L1 3955 3983 -2163 311 0 26 0 chr6 18764477 18764516 -170515038 + (CA)n Simple_repeat Simple_repeat 1 40 0 635 300 111 46 chr6 18764516 18765192 -170514362 + L1MC4a LINE L1 3983 4771 -1375 2749 126 139 30 chr6 18765192 18765667 -170513887 + MER1A DNA MER1_type 1 527 0 635 300 111 46 chr6 18765667 18765965 -170513589 + L1MC4a LINE L1 4771 5048 -1098 2348 108 0 0 chr6 18765986 18766291 -170513263 - AluSg SINE Alu -4 306 2 2405 92 0 3 chr6 18766384 18766689 -170512865 + AluY SINE Alu 1 304 -7 2291 106 0 0 chr6 18766736 18767037 -170512517 - AluSg SINE Alu -9 301 1 1035 241 48 40 chr6 18767113 18767232 -170512322 + L1MC4a LINE L1 5254 5371 -2437 2179 112 0 14 chr6 18767232 18767526 -170512028 - AluSg SINE Alu -20 290 1 1035 241 48 40 chr6 18767526 18767784 -170511770 + L1MC4a LINE L1 5371 5634 -2174 304 162 44 15 chr6 18767788 18767856 -170511698 + LTR33 LTR ERVL 16 85 -436 3578 102 12 8 chr6 18767859 18768341 -170511213 - MER1A DNA MER1_type 0 529 46 493 247 58 54 chr6 18768303 18768685 -170510869 + LTR33 LTR ERVL 34 479 -42 * 1944 128 7 35 chr6 18768690 18768978 -170510576 + AluSx SINE Alu 1 280 -32 546 91 0 0 chr6 18768978 18769055 -170510499 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 781 231 129 0 chr6 18769156 18769381 -170510173 + L1MC4a LINE L1 5618 5871 -1937 8206 3 0 0 chr6 18769428 18770327 -170509227 - L1HS LINE L1 0 6155 5257 476 213 109 11 chr6 18770321 18770495 -170509059 + L1MC4a LINE L1 5860 6050 -1758 * 2390 109 0 0 chr6 18770594 18770906 -170508648 + AluSx SINE Alu 1 312 0 220 270 70 78 chr6 18771992 18772107 -170507447 + MIR SINE MIR 28 141 -67 340 116 14 29 chr6 18772134 18772203 -170507351 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 282 235 5 53 chr6 18772185 18772372 -170507182 + GA-rich Low_complexity Low_complexity 2 179 0 * 34 0 0 0 chr6 18773764 18773798 -170505756 + AT_rich Low_complexity Low_complexity 1 34 0 1626 141 8 0 chr6 18773803 18774059 -170505495 - L1PA15 LINE L1 -3 6162 5905 2411 84 0 0 chr6 18774286 18774582 -170504972 + AluSg SINE Alu 1 296 -14 221 182 0 30 chr6 18775367 18775433 -170504121 + CT-rich Low_complexity Low_complexity 1 64 0 2250 4 0 0 chr6 18776337 18776583 -170502971 - L1PA2 LINE L1 -2 6153 5908 186 279 16 16 chr6 18776874 18776935 -170502619 + L3 LINE CR1 1516 1576 -1 4146 146 42 3 chr6 18776969 18777666 -170501888 - L1MB2 LINE L1 -7 6164 5441 645 289 141 13 chr6 18777718 18778241 -170501313 + L2 LINE L2 2683 3273 -40 2296 101 3 10 chr6 18778588 18778896 -170500658 + AluSx SINE Alu 1 306 -6 1857 157 7 0 chr6 18778993 18779308 -170500246 - AluSx SINE Alu 0 319 3 2443 48 3 7 chr6 18780707 18780999 -170498555 - AluY SINE Alu -16 295 5 23 0 0 0 chr6 18781027 18781050 -170498504 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 18781349 18781374 -170498180 + AT_rich Low_complexity Low_complexity 1 25 0 748 156 21 94 chr6 18782081 18782273 -170497281 - MER53 DNA DNA 0 189 12 21 57 0 0 chr6 18782273 18782308 -170497246 + AT_rich Low_complexity Low_complexity 1 35 0 2353 106 0 0 chr6 18782474 18782776 -170496778 + AluY SINE Alu 1 302 -9 951 172 0 0 chr6 18783076 18783227 -170496327 + FRAM SINE Alu 1 151 -25 3380 86 8 15 chr6 18783725 18784203 -170495351 - L1PB2 LINE L1 -1 6150 5676 23 0 0 0 chr6 18784733 18784756 -170494798 + AT_rich Low_complexity Low_complexity 1 23 0 2412 94 3 0 chr6 18784953 18785262 -170494292 + AluSg SINE Alu 1 310 0 1293 116 0 0 chr6 18785262 18785434 -170494120 + AluSg/x SINE Alu 124 295 -17 2009 143 3 0 chr6 18787548 18787848 -170491706 + AluJb SINE Alu 1 301 -11 1464 204 10 23 chr6 18788011 18788310 -170491244 - AluJo SINE Alu -15 297 3 733 254 135 55 chr6 18788316 18788701 -170490853 - HAL1 LINE L1 0 2507 2092 6105 72 2 19 chr6 18790052 18790859 -170488695 + L1PA8A LINE L1 5338 6131 0 2333 104 0 0 chr6 18791054 18791351 -170488203 - AluSx SINE Alu -15 297 1 3532 186 25 11 chr6 18793434 18794143 -170485411 + L1MB7 LINE L1 5254 5972 -212 2134 80 45 11 chr6 18794264 18794550 -170485004 + AluY SINE Alu 1 296 -15 348 233 113 63 chr6 18794716 18794875 -170484679 - MER5A DNA MER1_type -22 167 1 2240 110 0 0 chr6 18795742 18796033 -170483521 - AluSx SINE Alu -21 291 1 2330 78 3 29 chr6 18796154 18796462 -170483092 + AluY SINE Alu 1 300 -11 1744 138 70 121 chr6 18796572 18797027 -170482527 + MSTB1 LTR MaLR 1 432 0 2287 107 0 7 chr6 18797320 18797628 -170481926 - AluSx SINE Alu -6 306 1 1085 154 0 12 chr6 18797629 18797798 -170481756 - FRAM SINE Alu -15 161 1 2238 108 7 0 chr6 18798431 18798728 -170480826 + AluSg SINE Alu 1 299 -11 298 295 179 12 chr6 18798873 18799046 -170480508 + L1ME LINE L1 244 445 -5625 1984 153 0 0 chr6 18799082 18799376 -170480178 + AluJo SINE Alu 1 294 -18 185 0 0 39 chr6 18799395 18799421 -170480133 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 1789 139 41 44 chr6 18799494 18799592 -170479962 + MER44D DNA MER2_type 2 99 -2392 288 0 0 0 chr6 18799592 18799624 -170479930 + (GA)n Simple_repeat Simple_repeat 1 32 0 1789 139 41 44 chr6 18799624 18799728 -170479826 + MER44D DNA MER2_type 99 202 -2289 2090 105 7 14 chr6 18799728 18800022 -170479532 - AluSx SINE Alu -20 292 1 1789 139 41 44 chr6 18800022 18800157 -170479397 + MER44D DNA MER2_type 202 609 0 2335 95 0 16 chr6 18800333 18800502 -170479052 - AluSg SINE Alu -11 299 136 2503 64 0 0 chr6 18800502 18800799 -170478755 - AluY SINE Alu -14 297 1 2335 95 0 16 chr6 18800799 18800933 -170478621 - AluSg SINE Alu -174 136 1 1470 217 92 41 chr6 18801105 18801720 -170477834 - Charlie2 DNA MER1_type 0 2862 2164 2296 106 0 3 chr6 18801720 18802032 -170477522 + AluSx SINE Alu 1 311 -1 1470 217 92 41 chr6 18802032 18802170 -170477384 - Charlie2 DNA MER1_type -698 2164 2034 1048 199 143 56 chr6 18802215 18802607 -170476947 + LTR37A LTR ERV1 1 426 0 350 248 17 26 chr6 18802607 18802722 -170476832 - Charlie2 DNA MER1_type -892 1970 1857 569 284 38 54 chr6 18802831 18803092 -170476462 - Charlie2 DNA MER1_type -2525 257 1 2021 131 64 12 chr6 18803695 18804038 -170475516 - MLT1A1 LTR MaLR -4 361 1 2504 70 0 7 chr6 18804239 18804541 -170475013 - AluY SINE Alu -11 300 1 186 43 0 0 chr6 18804871 18804894 -170474660 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 100 3 21 chr6 18804894 18805183 -170474371 - AluY SINE Alu -27 284 1 2082 118 10 0 chr6 18805760 18806056 -170473498 + AluSx SINE Alu 1 299 -13 1230 166 68 26 chr6 18806066 18806299 -170473255 + L1MB3 LINE L1 5893 6140 -43 2469 71 0 0 chr6 18806299 18806594 -170472960 + AluY SINE Alu 1 295 -16 1230 166 68 26 chr6 18806594 18806625 -170472929 + L1MB3 LINE L1 6140 6168 -15 474 256 36 23 chr6 18807213 18807395 -170472159 + L1P4 LINE L1 5641 5824 -341 2575 52 0 3 chr6 18807402 18807710 -170471844 - AluY SINE Alu -4 307 1 2137 117 0 0 chr6 18807763 18808054 -170471500 + AluSx SINE Alu 1 291 -21 5208 162 11 13 chr6 18808278 18809266 -170470288 - L1MB8 LINE L1 0 6178 5195 1097 229 84 37 chr6 18809600 18809923 -170469631 + MER58B DNA MER1_type 3 340 -1 29 60 0 0 chr6 18811004 18811054 -170468500 + GC_rich Low_complexity Low_complexity 1 50 0 216 258 11 70 chr6 18811158 18811344 -170468210 + C-rich Low_complexity Low_complexity 3 177 0 202 330 0 23 chr6 18811564 18811652 -170467902 + G-rich Low_complexity Low_complexity 4 89 0 184 188 62 42 chr6 18812609 18812657 -170466897 + L2 LINE L2 3224 3272 0 227 281 116 58 chr6 18813574 18813695 -170465859 + L2 LINE L2 3176 3303 -10 3449 188 20 40 chr6 18814295 18814713 -170464841 - MER44D DNA MER2_type -1882 705 280 2581 120 72 8 chr6 18814713 18815113 -170464441 - MSTA LTR MaLR -2 426 1 3449 188 20 40 chr6 18815113 18815196 -170464358 - MER44D DNA MER2_type -2307 280 197 1427 157 36 5 chr6 18815196 18815419 -170464135 + MER30 DNA MER1_type 1 230 0 3449 188 20 40 chr6 18815419 18815618 -170463936 - MER44D DNA MER2_type -2390 197 18 2834 7 0 0 chr6 18816013 18816314 -170463240 - AluYa5 SINE Alu -9 302 2 180 0 0 0 chr6 18816764 18816784 -170462770 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2243 84 0 0 chr6 18816788 18817062 -170462492 - AluY SINE Alu -37 274 1 2165 99 7 20 chr6 18817582 18817884 -170461670 + AluSx SINE Alu 1 298 -14 202 159 0 23 chr6 18818103 18818147 -170461407 + L2 LINE L2 3267 3309 -4 2563 65 0 0 chr6 18818689 18818999 -170460555 + AluY SINE Alu 1 310 -1 1795 171 34 0 chr6 18819428 18819756 -170459798 + L1MA7 LINE L1 5926 6264 -27 607 156 0 0 chr6 18819802 18819892 -170459662 + Tigger5 DNA MER2_type 2234 2323 0 566 176 0 8 chr6 18819937 18820062 -170459492 + CT-rich Low_complexity Low_complexity 4 127 0 1987 165 0 0 chr6 18820087 18820390 -170459164 - AluJb SINE Alu -9 303 1 191 35 0 35 chr6 18820390 18820419 -170459135 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1684 188 30 0 chr6 18820419 18820717 -170458837 - AluJo SINE Alu -5 307 1 2294 89 7 0 chr6 18821557 18821849 -170457705 + AluSc SINE Alu 1 294 -15 1515 195 3 20 chr6 18822015 18822441 -170457113 + AluJo SINE Alu 1 421 0 2078 122 0 14 chr6 18822448 18822768 -170456786 + AluSq SINE Alu 1 316 0 2459 87 0 0 chr6 18823780 18824089 -170455465 - AluSx SINE Alu -3 309 1 1783 184 7 0 chr6 18824238 18824542 -170455012 + AluJb SINE Alu 1 306 -6 306 269 27 81 chr6 18824588 18824774 -170454780 + MER3 DNA MER1_type 34 209 0 1863 181 0 0 chr6 18824909 18825212 -170454342 + AluJb SINE Alu 3 305 -7 2404 57 0 0 chr6 18825326 18825607 -170453947 - AluY SINE Alu -15 296 16 1694 251 62 33 chr6 18825629 18826180 -170453374 - L1ME1 LINE L1 -4 6162 5596 1116 159 0 11 chr6 18826184 18826360 -170453194 - AluSg/x SINE Alu -10 300 127 726 247 0 0 chr6 18826361 18826523 -170453031 - L1ME1 LINE L1 -577 5589 5428 1962 162 0 0 chr6 18826577 18826874 -170452680 - AluSx SINE Alu -13 299 3 264 30 0 0 chr6 18827307 18827340 -170452214 + (TG)n Simple_repeat Simple_repeat 2 34 0 486 135 109 7 chr6 18827352 18827473 -170452081 + L1ME LINE L1 5365 5495 -675 2434 39 0 0 chr6 18827484 18827817 -170451737 + AluY SINE Alu 3 335 0 869 149 44 135 chr6 18827856 18827955 -170451599 - L1 LINE L1 -2059 4087 3981 1797 163 0 46 chr6 18827955 18828281 -170451273 - AluJb SINE Alu 0 312 2 869 149 44 135 chr6 18828281 18828305 -170451249 - L1 LINE L1 -2165 3981 3956 207 0 0 0 chr6 18828305 18828328 -170451226 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2241 70 0 21 chr6 18828333 18828619 -170450935 - AluY SINE Alu -31 280 1 869 149 44 135 chr6 18828619 18828784 -170450770 - L1 LINE L1 -2194 3952 3819 2331 82 3 0 chr6 18828802 18829084 -170450470 - AluSg SINE Alu -27 283 1 1011 188 45 55 chr6 18829587 18829675 -170449879 - MER33 DNA MER1_type -2261 324 237 2221 101 3 26 chr6 18829675 18829982 -170449572 + AluSx SINE Alu 1 300 -12 1011 188 45 55 chr6 18829982 18830202 -170449352 - MER33 DNA MER1_type -2348 237 19 2013 121 0 21 chr6 18830546 18830858 -170448696 - AluSg SINE Alu 0 306 1 1843 133 61 0 chr6 18830862 18831141 -170448413 - AluSq SINE Alu -17 296 1 268 53 26 0 chr6 18831266 18831304 -170448250 - MADE1 DNA Mariner 0 80 42 870 226 5 16 chr6 18831328 18831518 -170448036 + MER69 DNA AcHobo 21 208 -2318 554 176 73 39 chr6 18831518 18831723 -170447831 + Charlie5 DNA MER1_type 2407 2618 0 2748 250 27 47 chr6 18831860 18832214 -170447340 + MER69 DNA AcHobo 242 601 -1925 1660 183 3 14 chr6 18832214 18832532 -170447022 + AluJb SINE Alu 1 315 0 2748 250 27 47 chr6 18832532 18832779 -170446775 + MER69 DNA AcHobo 601 830 -1696 2307 105 0 10 chr6 18832779 18833092 -170446462 - AluSx SINE Alu -2 310 1 2748 250 27 47 chr6 18833092 18833196 -170446358 + MER69 DNA AcHobo 830 935 -1591 623 254 30 5 chr6 18833194 18833395 -170446159 + MER69 DNA AcHobo 2156 2361 -165 * 6204 94 4 34 chr6 18833461 18834041 -170445513 + L1PB2 LINE L1 5214 5810 -341 2354 103 0 0 chr6 18834041 18834341 -170445213 + AluSq SINE Alu 1 300 -13 6204 94 4 34 chr6 18834341 18834596 -170444958 + L1PB2 LINE L1 5810 6019 -132 2300 82 0 3 chr6 18834596 18834888 -170444666 + AluY SINE Alu 2 292 -19 6204 94 4 34 chr6 18834888 18835014 -170444540 + L1PB2 LINE L1 6019 6147 -4 249 195 39 0 chr6 18835035 18835112 -170444442 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 406 184 22 50 chr6 18835128 18835307 -170444247 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 235 279 38 32 chr6 18835317 18835475 -170444079 - L1MCc LINE L1 -4983 1440 1282 2187 174 61 9 chr6 18835543 18835986 -170443568 - Cheshire DNA MER1_type 0 2420 1955 1183 219 29 0 chr6 18835989 18836231 -170443323 - Cheshire DNA MER1_type -622 1798 1550 4156 216 41 71 chr6 18836234 18837631 -170441923 + L1M4 LINE L1 3031 4378 -1768 2389 80 6 13 chr6 18837631 18837943 -170441611 - AluY SINE Alu -1 310 1 4156 216 41 71 chr6 18837943 18838105 -170441449 + L1M4 LINE L1 4378 4543 -1603 1190 176 83 31 chr6 18838105 18838227 -170441327 - MER2 DNA MER2_type 0 345 231 983 177 6 12 chr6 18838227 18838415 -170441139 + FRAM SINE Alu 1 52 0 1190 176 83 31 chr6 18838415 18838580 -170440974 - MER2 DNA MER2_type -114 231 41 1155 186 32 20 chr6 18838672 18838920 -170440634 + L1M4 LINE L1 4539 4789 -1357 735 255 64 15 chr6 18838931 18839135 -170440419 - MER58A DNA MER1_type 0 224 11 1171 200 102 98 chr6 18839146 18839418 -170440136 + L1M4 LINE L1 4795 5071 -1075 2255 113 3 0 chr6 18839418 18839718 -170439836 + AluSx SINE Alu 1 301 -11 1171 200 102 98 chr6 18839718 18839934 -170439620 + L1M4 LINE L1 5071 5285 -861 492 98 0 0 chr6 18839937 18839998 -170439556 + Alu SINE Alu 2 62 -248 2122 123 0 0 chr6 18840100 18840385 -170439169 - AluSx SINE Alu -27 285 1 287 234 0 2 chr6 18840385 18840450 -170439104 + MLT1G LTR MaLR 532 590 0 2395 74 0 43 chr6 18840810 18841135 -170438419 + AluY SINE Alu 1 311 0 2511 66 3 0 chr6 18841562 18841865 -170437689 - AluSp SINE Alu -9 304 1 2240 113 0 3 chr6 18842194 18842494 -170437060 + AluSq SINE Alu 2 300 -13 2611 54 0 10 chr6 18842926 18843240 -170436314 + AluY SINE Alu 1 311 0 2198 103 0 3 chr6 18844235 18844526 -170435028 + AluSc SINE Alu 1 290 -19 1825 156 11 3 chr6 18844557 18844839 -170434715 - AluJb SINE Alu -26 286 3 3197 116 15 48 chr6 18844845 18845016 -170434538 - L1MA4 LINE L1 -3 6297 6122 2471 51 0 0 chr6 18845016 18845308 -170434246 - AluY SINE Alu -19 292 1 3197 116 15 48 chr6 18845308 18845655 -170433899 - L1MA4 LINE L1 -178 6122 5796 377 209 23 8 chr6 18845657 18845786 -170433768 + CT-rich Low_complexity Low_complexity 5 135 0 185 103 77 0 chr6 18845787 18845826 -170433728 + C-rich Low_complexity Low_complexity 5 46 0 1007 191 0 0 chr6 18845837 18846015 -170433539 - AluJb SINE Alu -1 311 134 1466 113 154 30 chr6 18846015 18846281 -170433273 - AluSg1 SINE Alu -10 299 1 232 218 333 39 chr6 18846857 18847013 -170432541 + MIR SINE MIR 53 254 -8 1014 128 0 0 chr6 18847165 18847298 -170432256 + FLAM_C SINE Alu 1 133 0 2492 55 3 7 chr6 18847556 18847864 -170431690 + AluY SINE Alu 1 307 -4 2288 184 26 26 chr6 18848282 18848636 -170430918 + MSTB LTR MaLR 1 357 -69 2376 86 0 13 chr6 18848636 18848949 -170430605 - AluY SINE Alu -2 309 1 2288 184 26 26 chr6 18848949 18849018 -170430536 + MSTB LTR MaLR 356 424 -2 227 230 223 50 chr6 18849028 18849167 -170430387 + MIR SINE MIR 53 215 -47 1716 151 63 6 chr6 18849591 18849776 -170429778 + L1MA7 LINE L1 5597 5809 -482 198 0 0 0 chr6 18849776 18849798 -170429756 + (CA)n Simple_repeat Simple_repeat 1 22 0 1716 151 63 6 chr6 18849798 18849929 -170429625 + L1MA7 LINE L1 5809 5931 -360 1994 124 5 93 chr6 18850011 18850234 -170429320 + L1MA7 LINE L1 5947 6125 -166 1842 146 9 35 chr6 18850234 18850550 -170429004 + AluJb SINE Alu 1 308 -4 1994 124 5 93 chr6 18850550 18850704 -170428850 + L1MA7 LINE L1 6125 6291 0 1541 185 7 27 chr6 18852571 18852688 -170426866 + AluJb SINE Alu 21 139 -173 2120 106 0 0 chr6 18852688 18852961 -170426593 + AluSg SINE Alu 1 273 -37 1541 185 7 27 chr6 18852961 18853140 -170426414 + AluJb SINE Alu 139 311 -1 2211 105 3 25 chr6 18853732 18854046 -170425508 + AluSx SINE Alu 5 311 -1 328 188 0 0 chr6 18854239 18854303 -170425251 - L1MC4 LINE L1 -1339 6703 6640 1981 92 27 44 chr6 18854305 18854599 -170424955 - AluY SINE Alu -22 289 1 250 294 55 18 chr6 18854614 18854723 -170424831 - MIR SINE MIR -25 237 125 2487 73 0 0 chr6 18854745 18855047 -170424507 + AluY SINE Alu 1 302 -9 22 0 0 0 chr6 18855454 18855476 -170424078 + AT_rich Low_complexity Low_complexity 1 22 0 203 184 0 0 chr6 18857255 18857293 -170422261 + (CAG)n Simple_repeat Simple_repeat 3 40 0 198 103 0 0 chr6 18857402 18857431 -170422123 + (CAG)n Simple_repeat Simple_repeat 3 31 0 24 0 0 0 chr6 18858160 18858184 -170421370 + AT_rich Low_complexity Low_complexity 1 24 0 246 308 100 0 chr6 18860796 18860916 -170418638 + MIR SINE MIR 117 248 -14 519 290 30 56 chr6 18861105 18861355 -170418199 + MIR SINE MIR 5 257 -5 2391 68 3 26 chr6 18861494 18861805 -170417749 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 18863118 18863140 -170416414 + AT_rich Low_complexity Low_complexity 1 22 0 329 318 38 14 chr6 18865449 18865590 -170413964 + MIR3 SINE MIR 59 204 -4 2353 88 3 0 chr6 18865609 18865905 -170413649 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr6 18866690 18866721 -170412833 + GC_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 18866858 18866888 -170412666 + GC_rich Low_complexity Low_complexity 1 30 0 249 175 16 32 chr6 18868017 18868080 -170411474 + G-rich Low_complexity Low_complexity 2 63 0 27 0 0 0 chr6 18868383 18868410 -170411144 + GC_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr6 18868512 18868561 -170410993 + GC_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr6 18868589 18868614 -170410940 + GC_rich Low_complexity Low_complexity 1 25 0 417 228 66 30 chr6 18872843 18873010 -170406544 - L1ME4a LINE L1 -2 6119 5947 340 318 7 47 chr6 18873085 18873233 -170406321 - L1MC4a LINE L1 -1979 5829 5688 270 0 0 0 chr6 18873236 18873266 -170406288 + (TA)n Simple_repeat Simple_repeat 2 31 0 2412 86 0 0 chr6 18873266 18873567 -170405987 - AluSq SINE Alu -12 301 1 5516 91 12 43 chr6 18873575 18874458 -170405096 - L1PA15 LINE L1 -6 6159 5250 2216 105 0 3 chr6 18874458 18874753 -170404801 - AluSx SINE Alu -14 298 5 5516 91 12 43 chr6 18874753 18875881 -170403673 - L1PA15 LINE L1 -915 5250 4231 4004 114 44 8 chr6 18875903 18876003 -170403551 - LTR9 LTR ERV1 0 612 517 180 0 0 0 chr6 18876003 18876023 -170403531 + (GAGAA)n Simple_repeat Simple_repeat 2 21 0 4004 114 44 8 chr6 18876023 18876511 -170403043 - LTR9 LTR ERV1 -95 517 3 523 192 158 0 chr6 18876526 18876646 -170402908 + L2 LINE L2 3175 3313 0 368 277 31 8 chr6 18876667 18876797 -170402757 - L1MC4a LINE L1 -496 5625 5493 2232 94 40 0 chr6 18876820 18877119 -170402435 + AluY SINE Alu 1 311 0 372 284 59 54 chr6 18877122 18877190 -170402364 - MLT1K LTR MaLR -17 571 505 2417 168 16 12 chr6 18877190 18877614 -170401940 + MSTB LTR MaLR 1 426 0 372 284 59 54 chr6 18877614 18877784 -170401770 - MLT1K LTR MaLR -83 505 332 36 23 0 0 chr6 18878166 18878209 -170401345 + AT_rich Low_complexity Low_complexity 1 43 0 303 313 40 0 chr6 18878356 18878455 -170401099 - MIR3 SINE MIR -48 160 58 951 204 65 18 chr6 18878487 18878659 -170400895 - L1ME3 LINE L1 0 6162 5971 396 0 0 0 chr6 18878659 18878703 -170400851 + (CA)n Simple_repeat Simple_repeat 2 45 0 951 204 65 18 chr6 18878703 18878809 -170400745 - L1ME3 LINE L1 -191 5971 5871 1117 254 64 15 chr6 18878854 18879184 -170400370 - LTR16A LTR ERVL -104 346 1 514 345 42 41 chr6 18879345 18879424 -170400130 - ERVL LTR ERVL -441 5323 5246 2070 140 7 94 chr6 18879424 18879859 -170399695 - MLT2C1 LTR ERVL 0 397 1 514 345 42 41 chr6 18879859 18880321 -170399233 - ERVL LTR ERVL -518 5246 4781 2313 227 111 29 chr6 18880360 18881088 -170398466 + MER21B LTR ERV1 14 801 -62 332 206 93 21 chr6 18881195 18881292 -170398262 - MSTA LTR MaLR -202 226 123 1653 327 82 37 chr6 18881660 18881720 -170397834 - ERVL LTR ERVL -1462 4192 4136 1890 145 134 31 chr6 18881720 18882107 -170397447 + MSTA LTR MaLR 1 427 -1 1653 327 82 37 chr6 18882107 18882470 -170397084 - ERVL LTR ERVL -1518 4136 3791 2723 29 0 0 chr6 18882470 18882777 -170396777 - AluYa5 SINE Alu -4 307 1 1653 327 82 37 chr6 18882777 18883762 -170395792 - ERVL LTR ERVL -1863 3791 2719 796 249 52 42 chr6 18883766 18884131 -170395423 - L1MEc LINE L1 -4981 1966 1527 1929 130 6 22 chr6 18884131 18884447 -170395107 + AluSx SINE Alu 1 311 -1 796 249 52 42 chr6 18884447 18884600 -170394954 - L1MEc LINE L1 -5420 1527 1377 550 339 32 0 chr6 18885154 18885405 -170394149 - L1MEc LINE L1 -6030 1108 850 2374 46 39 0 chr6 18885418 18885701 -170393853 - AluY SINE Alu -17 294 1 1852 223 31 41 chr6 18885852 18886407 -170393147 - L1ME1 LINE L1 -44 6516 5968 1530 260 74 27 chr6 18886409 18886900 -170392654 - L1ME1 LINE L1 -3167 3373 2830 1651 211 7 3 chr6 18886900 18887204 -170392350 - AluJb SINE Alu -7 305 1 1530 260 74 27 chr6 18887204 18887493 -170392061 - L1ME1 LINE L1 -3710 2830 2556 368 251 131 76 chr6 18887557 18887752 -170391802 - L1ME1 LINE L1 -4115 2606 2423 2439 81 0 0 chr6 18887752 18888048 -170391506 + AluSx SINE Alu 1 296 -16 368 251 131 76 chr6 18888048 18888568 -170390986 - L1ME1 LINE L1 -4298 2423 1933 261 0 0 0 chr6 18888568 18888597 -170390957 + (TG)n Simple_repeat Simple_repeat 2 30 0 368 251 131 76 chr6 18888597 18889047 -170390507 - L1ME1 LINE L1 -4788 1933 1298 2069 125 0 4 chr6 18889132 18889471 -170390083 + AluSg SINE Alu 1 338 0 362 253 0 40 chr6 18891450 18891549 -170388005 + L1MC4 LINE L1 6609 6703 -1339 823 162 30 24 chr6 18891598 18891765 -170387789 + L1M4 LINE L1 16 183 -6359 840 149 316 11 chr6 18892476 18892557 -170386997 + AluSg1 SINE Alu 55 110 -199 1895 137 38 3 chr6 18892557 18892850 -170386704 + AluSg SINE Alu 1 303 -7 840 149 316 11 chr6 18892850 18892942 -170386612 + AluSg1 SINE Alu 110 281 -28 815 182 0 0 chr6 18893067 18893215 -170386339 + L1M4 LINE L1 16 163 -6379 2103 154 0 0 chr6 18893216 18893521 -170386033 + AluJb SINE Alu 1 305 -7 1158 232 28 55 chr6 18893541 18893903 -170385651 + L1M4 LINE L1 153 504 -6038 1064 182 5 15 chr6 18893906 18894109 -170385445 - MLT1A1 LTR MaLR 0 365 165 302 240 13 0 chr6 18894121 18894196 -170385358 + MIR SINE MIR 8 83 -179 500 272 43 0 chr6 18894225 18894387 -170385167 - MARNA DNA Mariner -403 183 15 4410 168 24 12 chr6 18894956 18895689 -170383865 - L1PB4 LINE L1 0 6156 5433 1850 164 3 14 chr6 18895689 18895981 -170383573 - AluJo SINE Alu -18 294 6 4410 168 24 12 chr6 18895981 18896977 -170382577 - L1PB4 LINE L1 -723 5433 4402 607 157 112 51 chr6 18897062 18897240 -170382314 + MER53 DNA DNA 1 189 0 1369 258 133 31 chr6 18897244 18897498 -170382056 - L2 LINE L2 -54 3259 3032 222 37 0 0 chr6 18897498 18897525 -170382029 + (CA)n Simple_repeat Simple_repeat 2 28 0 1369 258 133 31 chr6 18897525 18898020 -170381534 - L2 LINE L2 -281 3032 2431 2941 132 0 9 chr6 18898417 18898871 -170380683 + L1PA16 LINE L1 5717 6166 0 569 134 50 17 chr6 18899685 18899804 -170379750 - AluSg/x SINE Alu -6 303 181 24 32 0 0 chr6 18899827 18899858 -170379696 + AT_rich Low_complexity Low_complexity 1 31 0 3981 193 36 67 chr6 18899873 18900590 -170378964 + L1MC/D LINE L1 4114 4852 -1388 2118 133 0 3 chr6 18900590 18900892 -170378662 + AluSg SINE Alu 1 301 -9 3981 193 36 67 chr6 18900892 18901024 -170378530 + L1MC/D LINE L1 4852 4987 -1253 1934 174 0 3 chr6 18901024 18901322 -170378232 + AluJb SINE Alu 1 297 -15 3981 193 36 67 chr6 18901322 18901683 -170377871 + L1MC/D LINE L1 4987 5299 -941 1973 140 24 0 chr6 18901683 18901976 -170377578 + AluJb SINE Alu 1 300 -12 3981 193 36 67 chr6 18901976 18902170 -170377384 + L1MC/D LINE L1 5299 5497 -743 445 203 0 24 chr6 18902166 18902289 -170377265 - L1MEc LINE L1 -2212 4003 3884 * 10346 141 20 18 chr6 18902290 18903115 -170376439 - L1PA13 LINE L1 0 6163 5341 2060 141 7 0 chr6 18903115 18903406 -170376148 - AluSx SINE Alu -19 293 1 10346 141 20 18 chr6 18903406 18904331 -170375223 - L1PA13 LINE L1 -822 5341 4390 351 0 0 0 chr6 18904331 18904370 -170375184 + (TG)n Simple_repeat Simple_repeat 1 39 0 10346 141 20 18 chr6 18904370 18905253 -170374301 - L1PA13 LINE L1 -1773 4390 3510 1764 256 84 40 chr6 18905272 18906108 -170373446 - L1MEc LINE L1 -3266 2949 2151 201 39 0 0 chr6 18906108 18906134 -170373420 + (CCA)n Simple_repeat Simple_repeat 2 27 0 1764 256 84 40 chr6 18906134 18906263 -170373291 - L1MEc LINE L1 -4064 2151 2029 1955 98 76 0 chr6 18906263 18906527 -170373027 + AluSq SINE Alu 1 284 -29 657 132 0 0 chr6 18906436 18906529 -170373025 + AluSp/q SINE Alu 194 320 0 * 204 59 0 29 chr6 18906529 18906563 -170372991 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1764 256 84 40 chr6 18906563 18906985 -170372569 - L1MEc LINE L1 -4186 2029 1535 573 287 93 50 chr6 18907418 18908266 -170371288 + L1MEd LINE L1 561 1350 -4781 581 282 90 65 chr6 18908319 18908596 -170370958 - MLT1H LTR MaLR -243 306 23 658 124 150 0 chr6 18908968 18909081 -170370473 + FRAM SINE Alu 1 128 -48 1664 154 0 19 chr6 18909081 18909348 -170370206 + AluSx SINE Alu 47 308 -4 2173 100 35 3 chr6 18909361 18909650 -170369904 + AluSq SINE Alu 1 298 -15 1519 183 47 10 chr6 18910205 18910505 -170369049 - AluJo SINE Alu -1 311 1 313 294 68 14 chr6 18910680 18910826 -170368728 + MIR3 SINE MIR 30 183 -25 2409 107 0 0 chr6 18911158 18911467 -170368087 - AluSc SINE Alu 0 309 1 2352 92 3 0 chr6 18912802 18913097 -170366457 - AluSp SINE Alu -17 296 1 642 298 75 94 chr6 18914068 18914441 -170365113 + LTR16A LTR ERVL 1 365 -92 510 81 11 0 chr6 18914441 18914528 -170365026 - L1PB2 LINE L1 -1 6150 6063 642 298 75 94 chr6 18914528 18914620 -170364934 + LTR16A LTR ERVL 365 457 0 1699 161 52 17 chr6 18915168 18915459 -170364095 + AluJo SINE Alu 5 305 -7 801 229 209 34 chr6 18915674 18916032 -170363522 - MLT1H LTR MaLR -128 421 1 311 264 56 48 chr6 18916032 18916157 -170363397 + L2 LINE L2 2575 2700 -614 1202 174 0 10 chr6 18916225 18916250 -170363304 - AluJb SINE Alu -1 311 287 477 0 0 0 chr6 18916250 18916303 -170363251 + (TG)n Simple_repeat Simple_repeat 2 54 0 1202 174 0 10 chr6 18916303 18916484 -170363070 - AluJb SINE Alu -25 287 107 2180 79 11 4 chr6 18916484 18916764 -170362790 + AluSc SINE Alu 16 297 -12 2593 62 0 3 chr6 18916764 18917073 -170362481 + AluY SINE Alu 1 308 -3 437 269 53 124 chr6 18917077 18917539 -170362015 + L2 LINE L2 2710 3096 -217 1994 115 24 10 chr6 18917539 18917827 -170361727 - AluSx SINE Alu -20 292 1 437 269 53 124 chr6 18917827 18918031 -170361523 + L2 LINE L2 3096 3313 0 987 113 0 0 chr6 18918366 18918508 -170361046 - L1PA10 LINE L1 -1 6167 6026 2336 107 3 0 chr6 18918523 18918832 -170360722 - AluSg SINE Alu 0 310 1 2107 105 3 48 chr6 18919313 18919627 -170359927 - AluJb SINE Alu -12 300 1 3731 212 93 8 chr6 18919850 18920856 -170358698 + MER69B DNA AcHobo 10 1151 -1375 1567 186 16 19 chr6 18920856 18921167 -170358387 - AluJo SINE Alu -2 310 1 3731 212 93 8 chr6 18921167 18921251 -170358303 + MER69B DNA AcHobo 1151 1226 0 356 296 10 77 chr6 18921298 18921393 -170358161 - MIR SINE MIR -1 261 183 2163 116 3 0 chr6 18921393 18921732 -170357822 + AluSp SINE Alu 1 340 0 356 296 10 77 chr6 18921732 18921831 -170357723 - MIR SINE MIR -79 183 79 505 290 74 54 chr6 18922887 18923319 -170356235 - L3 LINE CR1 -59 1518 1024 240 281 0 0 chr6 18923393 18923457 -170356097 - L3 LINE CR1 -606 971 908 281 289 199 13 chr6 18924060 18924216 -170355338 - Charlie8 DNA MER1_type -2130 287 103 594 91 0 0 chr6 18924299 18924376 -170355178 + LTR26B LTR ERV1 2 78 -453 860 108 0 0 chr6 18924377 18924488 -170355066 + 7SLRNA srpRNA srpRNA 203 313 -7 2900 144 6 45 chr6 18924488 18924723 -170354831 + LTR26B LTR ERV1 65 273 -258 2214 112 56 34 chr6 18924723 18925079 -170354475 + THE1B LTR MaLR 1 364 0 2900 144 6 45 chr6 18925079 18925329 -170354225 + LTR26B LTR ERV1 273 531 0 225 224 41 0 chr6 18925358 18925407 -170354147 - MLT1J LTR MaLR -26 485 435 324 0 0 0 chr6 18925672 18925708 -170353846 + (TG)n Simple_repeat Simple_repeat 1 36 0 300 27 0 0 chr6 18925857 18925894 -170353660 + (CA)n Simple_repeat Simple_repeat 2 38 0 2777 91 18 61 chr6 18926015 18926156 -170353398 - LTR56 LTR ERV1 0 445 299 2333 98 0 0 chr6 18926156 18926452 -170353102 - AluSq SINE Alu -17 296 1 2777 91 18 61 chr6 18926452 18926587 -170352967 - LTR56 LTR ERV1 -146 299 160 1541 83 69 5 chr6 18926587 18926803 -170352751 - MER30 DNA MER1_type 0 230 1 2777 91 18 61 chr6 18926803 18926921 -170352633 - LTR56 LTR ERV1 -285 160 94 1925 130 82 23 chr6 18926921 18927275 -170352279 - THE1C LTR MaLR 0 375 1 2777 91 18 61 chr6 18927275 18927366 -170352188 - LTR56 LTR ERV1 -351 94 1 751 194 74 25 chr6 18927370 18927612 -170351942 - L1ME LINE L1 -342 5779 5526 354 193 243 7 chr6 18927617 18927757 -170351797 + MER5A DNA MER1_type 11 183 -6 521 300 67 10 chr6 18927779 18928285 -170351269 - L1M3 LINE L1 -711 5457 4839 4048 146 6 2 chr6 18928630 18929262 -170350292 + MER41B LTR ERV1 1 635 0 234 299 123 75 chr6 18930178 18930486 -170349068 - LTR16C LTR ERVL -1 490 168 32 0 0 0 chr6 18931467 18931499 -170348055 + AT_rich Low_complexity Low_complexity 1 32 0 262 212 145 50 chr6 18931572 18931751 -170347803 + ORSL DNA AcHobo 80 275 0 2331 108 0 0 chr6 18931986 18932351 -170347203 + AluSx SINE Alu 1 365 0 505 139 0 47 chr6 18932356 18932442 -170347112 - L1MD2 LINE L1 -21 6338 6257 1725 98 128 22 chr6 18932454 18932728 -170346826 - AluY SINE Alu -8 303 1 6103 107 9 28 chr6 18932859 18933892 -170345662 + L1PA16 LINE L1 5142 6157 -9 27 0 0 0 chr6 18933892 18933919 -170345635 + AT_rich Low_complexity Low_complexity 1 27 0 2436 71 3 3 chr6 18934094 18934389 -170345165 - AluY SINE Alu -16 295 1 1179 161 0 70 chr6 18934594 18934824 -170344730 - MER20 DNA MER1_type -5 214 1 500 268 49 5 chr6 18934961 18935121 -170344433 + MIR SINE MIR 9 168 -62 398 273 128 6 chr6 18935454 18935626 -170343928 - MIR SINE MIR -21 241 49 2346 81 0 36 chr6 18935863 18936172 -170343382 - AluY SINE Alu -13 298 1 2018 87 42 52 chr6 18937267 18937579 -170341975 + AluSx SINE Alu 1 309 0 2488 66 16 0 chr6 18937731 18938034 -170341520 - AluY SINE Alu -3 308 1 466 281 54 75 chr6 18938561 18938949 -170340605 - MLT1J2 LTR MaLR -4 446 67 22 35 0 0 chr6 18939279 18939308 -170340246 + AT_rich Low_complexity Low_complexity 1 29 0 1745 188 0 13 chr6 18939823 18940137 -170339417 + AluJb SINE Alu 1 310 -2 2140 112 0 16 chr6 18940229 18940542 -170339012 - AluY SINE Alu -3 308 1 736 223 60 0 chr6 18941008 18941174 -170338380 + MER5B DNA MER1_type 1 176 -2 216 0 0 0 chr6 18941193 18941217 -170338337 + (T)n Simple_repeat Simple_repeat 1 24 0 1001 154 0 0 chr6 18941217 18941366 -170338188 + AluSc SINE Alu 73 221 -88 303 380 38 11 chr6 18941367 18941551 -170338003 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr6 18941602 18941626 -170337928 + AT_rich Low_complexity Low_complexity 1 24 0 714 201 0 8 chr6 18941641 18941775 -170337779 - FLAM_C SINE Alu 0 133 1 1586 287 59 30 chr6 18941820 18942325 -170337229 - MLT1G1 LTR MaLR 0 595 76 1380 163 192 31 chr6 18942534 18942920 -170336634 + pTR5 LTR ERV1 742 1189 -1249 369 182 32 26 chr6 18943276 18943430 -170336124 + C-rich Low_complexity Low_complexity 2 156 0 4461 128 40 75 chr6 18943454 18944305 -170335249 + LTR12 LTR ERV1 5 825 -1 262 179 64 51 chr6 18944640 18944718 -170334836 - MIR3 SINE MIR -1 207 129 2373 77 0 3 chr6 18945323 18945623 -170333931 + AluY SINE Alu 1 299 -12 2495 69 0 7 chr6 18945812 18946117 -170333437 + AluY SINE Alu 1 303 -8 2247 97 14 0 chr6 18946127 18946417 -170333137 + AluSp SINE Alu 1 294 -19 750 107 116 8 chr6 18947584 18947705 -170331849 + AluJo SINE Alu 3 136 -176 390 197 3 9 chr6 18947997 18948077 -170331477 + AluSx SINE Alu 1 60 -248 642 142 117 8 chr6 18948078 18948198 -170331356 - LTR12 LTR ERV1 0 714 582 3300 191 174 1 chr6 18948198 18948901 -170330653 - LTR12 LTR ERV1 0 826 3 812 207 62 76 chr6 18949088 18949378 -170330176 - pTR5 LTR ERV1 -1410 1028 743 1873 79 24 12 chr6 18949378 18949630 -170329924 + AluSx SINE Alu 58 312 0 1627 157 34 62 chr6 18949874 18950198 -170329356 + MLT1B LTR MaLR 76 390 0 411 354 29 10 chr6 18950243 18950452 -170329102 + L1MEd LINE L1 452 664 -5455 * 1440 179 51 34 chr6 18950443 18950794 -170328760 + L1MB4 LINE L1 5824 6180 0 652 286 37 38 chr6 18950986 18951067 -170328487 + L1MEd LINE L1 896 976 -5303 2184 104 0 22 chr6 18951067 18951384 -170328170 + AluSx SINE Alu 1 310 -2 652 286 37 38 chr6 18951384 18951752 -170327802 + L1MEd LINE L1 976 1387 -4892 342 194 39 48 chr6 18951766 18951869 -170327685 - MLT1H1 LTR MaLR 0 555 454 2146 117 10 0 chr6 18952044 18952342 -170327212 + AluSx SINE Alu 1 301 -11 278 279 0 0 chr6 18952451 18952512 -170327042 - MLT1F LTR MaLR -459 83 23 2675 122 43 32 chr6 18952519 18952960 -170326594 - Tigger2 DNA MER2_type 0 2718 2273 2488 81 0 3 chr6 18952970 18953279 -170326275 + AluSq SINE Alu 1 308 -5 372 191 0 0 chr6 18953303 18953366 -170326188 - Tigger2 DNA MER2_type -2655 63 1 392 253 99 78 chr6 18953384 18953668 -170325886 - MLT1H-int LTR MaLR -1 1370 1078 2276 119 0 0 chr6 18953668 18953971 -170325583 + AluSx SINE Alu 1 303 -9 2313 110 0 19 chr6 18954082 18954400 -170325154 - AluSx SINE Alu 0 312 1 1824 158 14 14 chr6 18954498 18954633 -170324921 + AluJo SINE Alu 2 136 -176 2149 107 0 47 chr6 18954633 18954951 -170324603 + AluSg SINE Alu 1 303 -7 1824 158 14 14 chr6 18954951 18955112 -170324442 + AluJo SINE Alu 135 298 -14 3914 196 84 9 chr6 18955114 18955899 -170323655 - MER21B LTR ERV1 -19 844 1 2023 167 22 6 chr6 18956665 18957024 -170322530 + MLT1A1 LTR MaLR 1 365 0 231 250 0 17 chr6 18957159 18957219 -170322335 - MLT1H-int LTR MaLR -1644 91 33 357 226 11 34 chr6 18957286 18957379 -170322175 - MLT1H LTR MaLR -6 549 454 560 286 42 67 chr6 18957536 18957892 -170321662 + L1MDa LINE L1 1761 2107 -4433 257 263 0 0 chr6 18958056 18958155 -170321399 + L1MDa LINE L1 2479 2577 -3963 * 622 292 76 50 chr6 18958126 18958892 -170320662 + L1MDa LINE L1 2797 3582 -2958 3315 269 149 48 chr6 18958995 18959169 -170320385 + L2 LINE L2 1370 1525 -1788 1756 176 3 3 chr6 18959169 18959464 -170320090 + AluJb SINE Alu 1 295 -17 3315 269 149 48 chr6 18959464 18960008 -170319546 + L2 LINE L2 1525 2013 -1300 2362 104 0 0 chr6 18960008 18960315 -170319239 - AluY SINE Alu -4 307 1 3315 269 149 48 chr6 18960315 18961035 -170318519 + L2 LINE L2 2013 2659 -654 2369 67 3 3 chr6 18961035 18961332 -170318222 - AluY SINE Alu -14 297 1 3315 269 149 48 chr6 18961332 18961647 -170317907 + L2 LINE L2 2659 3311 -2 2751 282 68 39 chr6 18961647 18961795 -170317759 + L1MDa LINE L1 4109 4251 -2289 2116 77 4 0 chr6 18961795 18962056 -170317498 - AluSg SINE Alu -14 296 35 2751 282 68 39 chr6 18962056 18963546 -170316008 + L1MDa LINE L1 4251 5795 -745 3036 157 48 66 chr6 18963553 18964157 -170315397 - LTR59 LTR ERV1 -4 593 1 4908 111 45 49 chr6 18964203 18964787 -170314767 + MER4E LTR ERV1 1 583 -196 2307 113 0 6 chr6 18964787 18965098 -170314456 - AluSq SINE Alu -4 309 1 4908 111 45 49 chr6 18965098 18965295 -170314259 + MER4E LTR ERV1 583 779 0 1901 162 0 16 chr6 18965321 18965635 -170313919 - AluJb SINE Alu -3 309 1 2651 162 49 126 chr6 18966229 18966981 -170312573 - LTR8A LTR ERV1 0 727 34 2957 190 36 122 chr6 18967019 18967467 -170312087 + L1MC5 LINE L1 6476 6961 -1000 2547 75 0 0 chr6 18967467 18967775 -170311779 + AluSx SINE Alu 1 308 -4 2957 190 36 122 chr6 18967775 18968014 -170311540 + L1MC5 LINE L1 6961 7219 -742 1710 187 76 15 chr6 18968014 18968356 -170311198 + MLT1A1 LTR MaLR 3 365 0 2957 190 36 122 chr6 18968356 18968653 -170310901 + L1MC5 LINE L1 7219 7330 -631 2371 100 0 0 chr6 18968653 18968962 -170310592 + AluSq SINE Alu 1 309 -4 2957 190 36 122 chr6 18968962 18969347 -170310207 + L1MC5 LINE L1 7330 7747 -214 2531 167 59 133 chr6 18969433 18970218 -170309336 + LTR8A LTR ERV1 1 727 0 1621 217 21 32 chr6 18970393 18970771 -170308783 - MLT1A2 LTR MaLR 0 374 1 236 212 152 0 chr6 18971967 18972033 -170307521 + MLT1L LTR MaLR 318 393 -222 317 276 51 39 chr6 18972059 18972215 -170307339 + MLT1L LTR MaLR 458 615 0 685 240 136 50 chr6 18972245 18972503 -170307051 - MLT1J LTR MaLR -9 502 223 1870 145 21 0 chr6 18972946 18973228 -170306326 + AluSx SINE Alu 1 288 -24 363 277 0 0 chr6 18974140 18974223 -170305331 + MIR SINE MIR 179 261 -1 1085 176 0 6 chr6 18974224 18974406 -170305148 - AluSg/x SINE Alu -7 303 123 317 300 120 27 chr6 18974408 18974558 -170304996 + MIR3 SINE MIR 36 199 -9 1323 139 0 0 chr6 18974903 18975090 -170304464 - AluSc SINE Alu -116 193 7 2349 97 6 0 chr6 18975095 18975406 -170304148 - AluSp SINE Alu 0 313 1 2319 107 0 0 chr6 18975437 18975747 -170303807 + AluSg SINE Alu 1 310 0 1224 234 81 31 chr6 18975747 18976132 -170303422 - MLT1C LTR MaLR -58 409 6 223 250 0 33 chr6 18976353 18976413 -170303141 + C-rich Low_complexity Low_complexity 1 58 0 1902 159 36 3 chr6 18977542 18977844 -170301710 - AluSx SINE Alu 0 312 1 970 165 23 65 chr6 18978179 18978457 -170301097 + MSTB LTR MaLR 1 353 -73 2332 110 3 0 chr6 18978457 18978767 -170300787 - AluSx SINE Alu -1 311 1 970 165 23 65 chr6 18978767 18978839 -170300715 + MSTB LTR MaLR 353 426 0 349 303 103 23 chr6 18979122 18979297 -170300257 + MIR SINE MIR 34 222 -40 1829 142 7 29 chr6 18980695 18981004 -170298550 - AluJo SINE Alu -10 302 1 378 0 0 0 chr6 18981440 18981482 -170298072 + (TA)n Simple_repeat Simple_repeat 2 43 0 269 255 0 10 chr6 18981781 18981883 -170297671 + (TA)n Simple_repeat Simple_repeat 1 101 0 181 264 69 35 chr6 18981934 18982021 -170297533 + L2 LINE L2 3137 3226 -46 771 219 88 0 chr6 18982046 18982206 -170297348 - MER5B DNA MER1_type -2 176 3 491 323 25 10 chr6 18982665 18982863 -170296691 + L1ME LINE L1 5575 5775 -346 345 100 0 0 chr6 18982865 18982915 -170296639 + (TA)n Simple_repeat Simple_repeat 1 50 0 1507 137 0 13 chr6 18982921 18983148 -170296406 - AluJb SINE Alu -26 286 63 2079 103 0 7 chr6 19083256 19083548 -170196006 + AluSx SINE Alu 1 290 -22 1271 144 101 25 chr6 19084165 19084309 -170195245 + AluSx SINE Alu 3 135 -177 2449 60 0 0 chr6 19084309 19084609 -170194945 + AluY SINE Alu 1 300 -11 1271 144 101 25 chr6 19084609 19084741 -170194813 + AluSx SINE Alu 135 300 -12 25 0 0 0 chr6 19085036 19085061 -170194493 + AT_rich Low_complexity Low_complexity 1 25 0 1867 118 49 3 chr6 19085067 19085355 -170194199 + AluSg SINE Alu 1 301 -9 1927 129 7 0 chr6 19085407 19085701 -170193853 + AluSx SINE Alu 1 296 -16 320 98 78 0 chr6 19085987 19086038 -170193516 + LTR8 LTR ERV1 533 587 -104 279 219 324 76 chr6 19086098 19086308 -170193246 - MIR SINE MIR 0 262 1 560 180 197 39 chr6 19086570 19086748 -170192806 + MER58C DNA MER1_type 10 215 0 2081 92 3 20 chr6 19086798 19087092 -170192462 + AluSp SINE Alu 9 297 -16 1872 121 3 14 chr6 19087101 19087234 -170192320 + AluSg SINE Alu 2 135 -175 2212 109 0 0 chr6 19087234 19087537 -170192017 + AluSg1 SINE Alu 1 303 -6 1872 121 3 14 chr6 19087537 19087685 -170191869 + AluSg SINE Alu 135 280 -30 2354 63 0 3 chr6 19088078 19088379 -170191175 + AluY SINE Alu 1 300 -11 1148 127 0 0 chr6 19088381 19088554 -170191000 + AluSp SINE Alu 136 308 -5 2236 84 10 3 chr6 19088770 19089079 -170190475 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 19089494 19089522 -170190032 + AT_rich Low_complexity Low_complexity 1 28 0 2474 47 0 0 chr6 19089863 19090160 -170189394 + AluY SINE Alu 1 297 -14 2165 61 14 10 chr6 19090612 19090909 -170188645 - AluYa5 SINE Alu -13 298 1 23 0 0 0 chr6 19092317 19092340 -170187214 + GC_rich Low_complexity Low_complexity 1 23 0 271 350 6 6 chr6 19092605 19092768 -170186786 + (CCG)n Simple_repeat Simple_repeat 3 165 0 493 319 48 0 chr6 19093243 19093409 -170186145 + MIR SINE MIR 40 213 -49 327 331 37 7 chr6 19093601 19093737 -170185817 - MIR3 SINE MIR -28 180 41 2115 117 0 13 chr6 19093816 19094132 -170185422 - AluSx SINE Alu 0 312 1 421 220 77 82 chr6 19094145 19094191 -170185363 + MIR SINE MIR 66 111 -151 2116 73 37 13 chr6 19094191 19094491 -170185063 - AluSp SINE Alu -6 307 1 421 220 77 82 chr6 19094491 19094626 -170184928 + MIR SINE MIR 111 246 -16 1988 109 3 23 chr6 19095728 19096031 -170183523 + AluSx SINE Alu 1 297 -15 237 65 0 0 chr6 19096043 19096074 -170183480 + (TA)n Simple_repeat Simple_repeat 2 32 0 1563 179 66 0 chr6 19096349 19096650 -170182904 + Tigger3(Golem) DNA MER2_type 1 321 -2708 1851 147 0 3 chr6 19096707 19097000 -170182554 + AluJo SINE Alu 12 303 -9 221 0 35 0 chr6 19097013 19097042 -170182512 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1973 127 3 7 chr6 19097648 19097948 -170181606 + AluSx SINE Alu 1 299 -13 2364 66 0 22 chr6 19098003 19098320 -170181234 + AluY SINE Alu 1 310 -1 252 195 237 51 chr6 19098629 19098747 -170180807 + MER5A DNA MER1_type 18 157 -32 201 235 73 15 chr6 19098715 19098783 -170180771 - MER5A DNA MER1_type -114 75 4 * 2282 51 0 51 chr6 19099614 19099930 -170179624 - AluY SINE Alu -11 300 1 207 0 0 0 chr6 19100700 19100723 -170178831 + (A)n Simple_repeat Simple_repeat 1 23 0 1538 101 5 5 chr6 19101569 19101786 -170177768 + AluSp SINE Alu 65 281 -32 198 0 0 0 chr6 19101980 19102002 -170177552 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1150 124 0 6 chr6 19102019 19102196 -170177358 - AluSg/x SINE Alu -21 289 114 2237 72 3 7 chr6 19103017 19103310 -170176244 - AluY SINE Alu -15 296 5 1821 156 3 0 chr6 19103530 19103825 -170175729 - AluSx SINE Alu -16 296 1 1839 141 14 3 chr6 19103827 19104118 -170175436 - AluJo SINE Alu -18 294 1 435 19 0 0 chr6 19104347 19104399 -170175155 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 234 206 101 63 chr6 19104484 19104567 -170174987 - MIR SINE MIR -110 98 34 330 197 103 60 chr6 19104834 19104951 -170174603 + MER53 DNA DNA 3 124 -65 243 0 0 0 chr6 19104995 19105022 -170174532 + (TA)n Simple_repeat Simple_repeat 1 27 0 1162 120 6 0 chr6 19105022 19105197 -170174357 - AluSg/x SINE Alu -3 309 134 2222 85 7 0 chr6 19105197 19105491 -170174063 - AluY SINE Alu -15 296 1 1047 158 84 0 chr6 19105743 19105945 -170173609 - AluJb SINE Alu -9 303 85 1812 109 64 0 chr6 19105989 19106277 -170173277 - AluY SINE Alu 0 305 1 804 132 0 0 chr6 19106632 19106746 -170172808 - 5S rRNA rRNA -1 120 7 2195 97 13 0 chr6 19107211 19107510 -170172044 - AluSx SINE Alu -9 303 1 292 223 89 121 chr6 19107581 19107619 -170171935 + MER5A DNA MER1_type 17 55 -134 207 0 0 0 chr6 19107619 19107642 -170171912 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1682 171 0 17 chr6 19107643 19107930 -170171624 - AluJb SINE Alu -30 282 1 292 223 89 121 chr6 19107930 19108046 -170171508 + MER5A DNA MER1_type 54 168 -21 1969 77 25 32 chr6 19108288 19108594 -170170960 - AluSp SINE Alu 0 304 1 970 198 6 0 chr6 19108717 19108884 -170170670 + FAM SINE Alu 1 168 -7 279 0 0 0 chr6 19108890 19108921 -170170633 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 706 188 8 16 chr6 19109490 19109618 -170169936 + FLAM_C SINE Alu 2 128 -5 185 319 11 43 chr6 19109952 19110046 -170169508 - L3 LINE CR1 -5 1572 1482 27 0 0 0 chr6 19110387 19110414 -170169140 + AT_rich Low_complexity Low_complexity 1 27 0 2044 101 7 13 chr6 19110501 19110799 -170168755 + AluSx SINE Alu 9 304 -8 2588 30 0 0 chr6 19110799 19111098 -170168456 + AluY SINE Alu 1 299 -12 253 302 85 9 chr6 19111098 19111204 -170168350 - MIR SINE MIR -79 129 16 1998 107 18 0 chr6 19111281 19111562 -170167992 + AluSg SINE Alu 1 286 -24 304 254 0 192 chr6 19111644 19111837 -170167717 - MIR SINE MIR -6 256 101 808 148 15 22 chr6 19111838 19111973 -170167581 + AluJo SINE Alu 2 135 -177 2144 67 0 37 chr6 19112047 19112346 -170167208 - AluY SINE Alu -21 290 3 343 301 62 17 chr6 19112679 19112855 -170166699 - L3 LINE CR1 -171 1406 1223 302 321 95 22 chr6 19112887 19113024 -170166530 + HAL1 LINE L1 1 147 -2360 2202 61 4 0 chr6 19113024 19113333 -170166221 - AluY SINE Alu 0 310 1 723 105 0 0 chr6 19113333 19113438 -170166116 - AluSg/x SINE Alu -2 308 204 3975 163 62 61 chr6 19113438 19114496 -170165058 + pTR5 LTR ERV1 57 370 -344 1024 299 66 21 chr6 19114680 19115104 -170164450 - LTR16B LTR ERVL -4 460 18 1974 132 3 10 chr6 19115358 19115669 -170163885 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr6 19115893 19115917 -170163637 + AT_rich Low_complexity Low_complexity 1 24 0 342 241 121 0 chr6 19116043 19116184 -170163370 + L1P LINE L1 4883 5040 -1106 1268 169 29 16 chr6 19116240 19116483 -170163071 + AluJb SINE Alu 35 280 -32 596 246 22 78 chr6 19116484 19116584 -170162970 + L1MC4a LINE L1 5696 5800 -2008 1586 166 24 10 chr6 19116584 19116874 -170162680 + AluJb SINE Alu 1 294 -18 596 246 22 78 chr6 19116874 19116945 -170162609 + L1MC4a LINE L1 5800 5853 -1955 1713 173 0 10 chr6 19116945 19117245 -170162309 + AluJo SINE Alu 9 305 -7 596 246 22 78 chr6 19117245 19117304 -170162250 + L1MC4a LINE L1 5853 5914 -1894 341 202 96 0 chr6 19117634 19117728 -170161826 - MER115 DNA AcHobo -65 628 526 2162 119 0 0 chr6 19117731 19118042 -170161512 - AluSx SINE Alu -1 311 1 844 227 6 0 chr6 19118045 19118208 -170161346 - FRAM SINE Alu -17 159 1 2039 125 3 0 chr6 19118224 19118527 -170161027 + AluSx SINE Alu 1 304 -8 505 152 0 0 chr6 19118576 19118655 -170160899 - AluJ/FLAM SINE Alu -213 99 21 1895 134 7 0 chr6 19118655 19118946 -170160608 - AluSx SINE Alu -11 301 9 5468 168 66 33 chr6 19119000 19120452 -170159102 + pTR5 LTR ERV1 735 2396 -42 2665 41 0 0 chr6 19120452 19120770 -170158784 - AluYb8 SINE Alu 0 318 1 5468 168 66 33 chr6 19120770 19120808 -170158746 + pTR5 LTR ERV1 2396 2431 -7 298 240 40 40 chr6 19120811 19120886 -170158668 + FRAM/FAM SINE Alu 4 78 -97 271 344 73 0 chr6 19120892 19120988 -170158566 + FRAM SINE Alu 56 158 -8 237 125 143 18 chr6 19121075 19121131 -170158423 + MLT2F LTR ERVL 1 63 -600 1515 164 42 0 chr6 19121178 19121464 -170158090 - AluSx SINE Alu -12 300 3 1475 227 112 10 chr6 19121472 19121855 -170157699 + MLT2F LTR ERVL 184 605 -58 1531 167 4 8 chr6 19122948 19123212 -170156342 - AluJo SINE Alu -49 263 1 2246 89 3 0 chr6 19123234 19123536 -170156018 - AluY SINE Alu -8 303 1 26 88 0 0 chr6 19123536 19123604 -170155950 + AT_rich Low_complexity Low_complexity 1 68 0 2228 102 0 3 chr6 19123605 19123909 -170155645 + AluSx SINE Alu 1 303 -9 933 114 0 0 chr6 19124022 19124153 -170155401 + AluSg/x SINE Alu 154 284 -28 1891 89 4 0 chr6 19124175 19124432 -170155122 - AluSx SINE Alu -8 304 47 837 155 0 0 chr6 19124475 19124604 -170154950 + FLAM_C SINE Alu 1 129 -14 23 0 0 0 chr6 19124604 19124627 -170154927 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr6 19124686 19124733 -170154821 + (CA)n Simple_repeat Simple_repeat 2 48 0 963 34 0 0 chr6 19124741 19124858 -170154696 - AluY SINE Alu -11 300 184 1865 141 10 3 chr6 19125592 19125890 -170153664 + AluSx SINE Alu 3 302 -10 938 210 20 0 chr6 19126084 19126279 -170153275 + MER105 DNA DNA 4 202 -2 813 165 0 0 chr6 19126527 19126660 -170152894 - FLAM_C SINE Alu 0 133 1 1837 123 57 17 chr6 19126735 19126905 -170152649 - AluSx SINE Alu 0 312 123 2244 107 0 0 chr6 19126905 19127215 -170152339 - AluSq SINE Alu -3 310 1 1837 123 57 17 chr6 19127215 19127344 -170152210 - AluSx SINE Alu -189 123 1 813 142 0 0 chr6 19127346 19127473 -170152081 - AluSq/x SINE Alu -186 127 1 282 335 96 5 chr6 19127625 19127834 -170151720 + MARNA DNA Mariner 88 315 -271 1981 106 23 26 chr6 19127848 19128150 -170151404 + AluSx SINE Alu 1 301 -11 277 314 174 16 chr6 19128181 19128302 -170151252 + MIR3 SINE MIR 67 206 -2 296 246 0 0 chr6 19128302 19128363 -170151191 + MARNA DNA Mariner 349 409 -177 199 304 69 39 chr6 19128443 19128545 -170151009 - L2 LINE L2 0 3313 3209 4517 129 75 92 chr6 19128626 19129019 -170150535 - L1MA9 LINE L1 0 6312 5914 1726 164 6 16 chr6 19129019 19129331 -170150223 - AluJb SINE Alu -2 310 2 4517 129 75 92 chr6 19129331 19129480 -170150074 - L1MA9 LINE L1 -398 5914 5764 333 0 0 0 chr6 19129480 19129517 -170150037 + (TG)n Simple_repeat Simple_repeat 2 38 0 4517 129 75 92 chr6 19129517 19129617 -170149937 - L1MA9 LINE L1 -548 5764 5664 1826 132 0 21 chr6 19129617 19129954 -170149600 - AluSx SINE Alu 0 331 1 4517 129 75 92 chr6 19129954 19130314 -170149240 - L1MA9 LINE L1 -648 5664 5324 892 149 23 40 chr6 19130319 19130493 -170149061 - AluJo SINE Alu -21 291 121 199 259 103 0 chr6 19130600 19130658 -170148896 - MIR SINE MIR 0 262 199 2376 166 123 17 chr6 19130666 19131131 -170148423 + MLT2B1 LTR ERVL 2 515 -5 305 241 0 46 chr6 19131186 19131273 -170148281 - MIR SINE MIR -108 154 72 408 194 140 11 chr6 19131297 19131390 -170148164 + FLAM_C SINE Alu 3 107 -36 2727 16 0 0 chr6 19131395 19131704 -170147850 - AluYa5 SINE Alu -2 309 1 25 51 0 0 chr6 19131720 19131759 -170147795 + AT_rich Low_complexity Low_complexity 1 39 0 2059 114 3 3 chr6 19132919 19133217 -170146337 - AluSx SINE Alu -14 298 1 370 307 120 29 chr6 19133682 19133956 -170145598 + L2 LINE L2 2974 3272 0 2098 107 0 0 chr6 19134790 19135079 -170144475 + AluSx SINE Alu 21 309 -3 585 254 76 87 chr6 19135118 19135308 -170144246 - MIR SINE MIR 0 262 74 1643 168 28 3 chr6 19135308 19135594 -170143960 + AluJb SINE Alu 1 293 -19 585 254 76 87 chr6 19135594 19135667 -170143887 - MIR SINE MIR -188 74 2 2151 123 0 0 chr6 19135691 19135992 -170143562 - AluSx SINE Alu -11 301 1 594 280 110 30 chr6 19136283 19136483 -170143071 + MIR SINE MIR 47 262 0 995 298 32 49 chr6 19136527 19136635 -170142919 + MLT1I LTR MaLR 44 152 -257 2025 121 10 3 chr6 19136635 19136942 -170142612 - AluSg SINE Alu -1 309 1 995 298 32 49 chr6 19136942 19137202 -170142352 + MLT1I LTR MaLR 152 406 -3 283 133 44 0 chr6 19137794 19137839 -170141715 - AluSc SINE Alu -110 189 143 293 164 98 0 chr6 19137839 19137900 -170141654 + MLT1G1 LTR MaLR 529 595 0 330 312 40 83 chr6 19137910 19137993 -170141561 + L3 LINE CR1 1214 1299 -278 2235 103 0 6 chr6 19137993 19138304 -170141250 + AluSx SINE Alu 1 309 -3 330 312 40 83 chr6 19138304 19138521 -170141033 + L3 LINE CR1 1299 1501 -76 1778 158 0 11 chr6 19138617 19138929 -170140625 - AluSx SINE Alu 0 311 3 239 111 0 22 chr6 19139546 19139591 -170139963 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1874 128 14 10 chr6 19139594 19139890 -170139664 - AluJo SINE Alu -15 297 1 1963 176 71 47 chr6 19139892 19140187 -170139367 - MLT1C LTR MaLR 0 467 156 2191 109 3 0 chr6 19140187 19140489 -170139065 + AluSx SINE Alu 1 303 -9 1963 176 71 47 chr6 19140489 19140643 -170138911 - MLT1C LTR MaLR -311 156 7 2284 82 3 0 chr6 19140767 19141073 -170138481 - AluSp SINE Alu -6 307 1 331 226 15 90 chr6 19141238 19141371 -170138183 + L2 LINE L2 3191 3313 0 1051 167 56 60 chr6 19141483 19141619 -170137935 + MER8 DNA MER2_type 4 140 -99 1894 146 0 16 chr6 19141619 19141928 -170137626 - AluJb SINE Alu -3 309 6 1051 167 56 60 chr6 19141928 19142025 -170137529 + MER8 DNA MER2_type 140 236 -3 190 282 127 0 chr6 19142260 19142331 -170137223 + L2 LINE L2 3225 3304 -9 26 0 0 0 chr6 19142735 19142761 -170136793 + GC_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr6 19142940 19142981 -170136573 + GC_rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chr6 19143048 19143073 -170136481 + (CCG)n Simple_repeat Simple_repeat 3 27 0 36 62 0 0 chr6 19143073 19143137 -170136417 + GC_rich Low_complexity Low_complexity 1 64 0 216 155 35 17 chr6 19143174 19143232 -170136322 + (CGG)n Simple_repeat Simple_repeat 1 59 0 221 146 0 55 chr6 19143412 19143467 -170136087 + (CGGGGG)n Simple_repeat Simple_repeat 6 57 0 282 283 11 0 chr6 19143970 19144062 -170135492 - MIR3 SINE MIR -23 185 93 296 276 87 24 chr6 19146608 19146735 -170132819 + L2 LINE L2 3121 3255 -17 1735 174 17 0 chr6 19146969 19147262 -170132292 + AluSx SINE Alu 1 298 -14 2384 62 0 13 chr6 19147563 19147868 -170131686 - AluSg SINE Alu -9 301 1 226 175 25 0 chr6 19148312 19148352 -170131202 + MER46A DNA MER2_type 9 49 -187 2122 113 0 7 chr6 19148359 19148659 -170130895 + AluSq SINE Alu 1 298 -15 618 162 0 19 chr6 19148659 19148764 -170130790 + MER46A DNA MER2_type 134 236 0 2114 94 7 3 chr6 19149044 19149343 -170130211 + AluSc SINE Alu 10 309 0 439 303 70 4 chr6 19149392 19149620 -170129934 + MER112 DNA MER1_type 18 260 0 3424 222 143 39 chr6 19149736 19151145 -170128409 - HAL1 LINE L1 -96 2411 856 242 336 43 43 chr6 19151147 19151263 -170128291 + L2 LINE L2 3138 3253 -19 1809 147 0 27 chr6 19151455 19151754 -170127800 - AluSx SINE Alu -21 291 1 1118 33 0 33 chr6 19152907 19153058 -170126496 + L1PA5 LINE L1 6008 6153 -1 464 174 245 0 chr6 19153518 19153616 -170125938 - MER5A DNA MER1_type -2 187 66 2374 71 7 3 chr6 19153625 19153935 -170125619 - AluY SINE Alu 0 311 1 426 134 0 12 chr6 19153935 19154007 -170125547 - AluS SINE Alu -9 302 230 5690 142 37 63 chr6 19154007 19155450 -170124104 + pTR5 LTR ERV1 276 2295 -143 1356 152 4 41 chr6 19155451 19155695 -170123859 - AluSq SINE Alu -78 235 1 435 123 14 14 chr6 19155695 19155768 -170123786 - MER5A DNA MER1_type -113 76 4 818 186 120 0 chr6 19155776 19155943 -170123611 + MER3 DNA MER1_type 1 187 -22 689 190 21 35 chr6 19155968 19156110 -170123444 - MER5B DNA MER1_type -3 175 36 701 230 78 11 chr6 19156110 19156317 -170123237 - MLT1G LTR MaLR 0 590 303 220 129 0 0 chr6 19156320 19156351 -170123203 - MER5B DNA MER1_type -143 35 5 2277 81 7 0 chr6 19156380 19156677 -170122877 + AluSg SINE Alu 2 300 -10 382 307 46 20 chr6 19156971 19157124 -170122430 + MIR3 SINE MIR 15 171 -37 189 0 0 0 chr6 19157902 19157923 -170121631 + (T)n Simple_repeat Simple_repeat 1 21 0 1858 160 0 10 chr6 19159032 19159339 -170120215 + AluJb SINE Alu 1 304 -8 27 0 0 0 chr6 19159346 19159373 -170120181 + AT_rich Low_complexity Low_complexity 1 27 0 952 117 0 7 chr6 19160300 19160437 -170119117 - AluSq/x SINE Alu -176 136 1 2451 50 0 0 chr6 19160535 19160834 -170118720 + AluY SINE Alu 1 299 -12 22 56 0 0 chr6 19160869 19160905 -170118649 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr6 19161338 19161359 -170118195 + AT_rich Low_complexity Low_complexity 1 21 0 243 262 33 115 chr6 19161546 19161668 -170117886 + L2 LINE L2 3174 3285 -28 23 0 0 0 chr6 19162806 19162829 -170116725 + AT_rich Low_complexity Low_complexity 1 23 0 436 213 94 39 chr6 19163777 19163904 -170115650 + MIR SINE MIR 18 151 -111 180 0 0 0 chr6 19164293 19164313 -170115241 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr6 19164451 19164474 -170115080 + AT_rich Low_complexity Low_complexity 1 23 0 2026 120 0 58 chr6 19164555 19164863 -170114691 - AluSx SINE Alu -22 290 1 2012 113 10 26 chr6 19165628 19165938 -170113616 + AluSx SINE Alu 1 305 -7 842 216 0 7 chr6 19166639 19166787 -170112767 - FRAM SINE Alu -30 146 1 452 250 0 9 chr6 19166787 19166899 -170112655 - L1ME2 LINE L1 -12 6152 6042 2099 110 7 3 chr6 19166902 19167192 -170112362 + AluSg SINE Alu 1 291 -19 2330 102 0 0 chr6 19167316 19167621 -170111933 - AluSq SINE Alu -8 305 1 2008 125 56 0 chr6 19168425 19168712 -170110842 - AluSx SINE Alu -9 303 1 2355 87 6 0 chr6 19170704 19171015 -170108539 - AluSp SINE Alu 0 313 1 1174 131 17 63 chr6 19171649 19171886 -170107668 + AluJo SINE Alu 86 311 -1 4481 153 59 106 chr6 19172936 19173575 -170105979 - MER21A LTR ERV1 0 931 352 2150 116 3 3 chr6 19173575 19173867 -170105687 + AluSx SINE Alu 1 292 -20 4481 153 59 106 chr6 19173867 19174204 -170105350 - MER21A LTR ERV1 -579 352 1 866 240 64 0 chr6 19174466 19174670 -170104884 + MIR SINE MIR 13 229 -33 243 336 82 0 chr6 19175470 19175580 -170103974 + MIR3 SINE MIR 49 167 -41 748 145 0 87 chr6 19175627 19175765 -170103789 + FLAM_C SINE Alu 1 126 -7 1635 174 16 35 chr6 19175778 19176094 -170103460 + AluJo SINE Alu 1 310 -2 21 0 0 0 chr6 19176230 19176251 -170103303 + AT_rich Low_complexity Low_complexity 1 21 0 2330 82 0 16 chr6 19176433 19176739 -170102815 - AluY SINE Alu -10 301 1 601 259 75 26 chr6 19177469 19177722 -170101832 - L1MC4a LINE L1 -167 5954 5691 253 218 18 0 chr6 19177753 19177808 -170101746 + CT-rich Low_complexity Low_complexity 1 56 0 2408 70 7 0 chr6 19177810 19178108 -170101446 - AluY SINE Alu -11 300 1 1641 167 10 27 chr6 19178108 19178406 -170101148 - AluJo SINE Alu -18 294 1 2409 82 0 3 chr6 19178431 19178734 -170100820 - AluY SINE Alu -8 303 2 1984 171 63 22 chr6 19178890 19179305 -170100249 + L1MB8 LINE L1 5741 6172 -6 1585 139 99 15 chr6 19179326 19179599 -170099955 + AluJb SINE Alu 1 296 -16 2109 117 10 16 chr6 19181891 19182199 -170097355 + AluSx SINE Alu 1 306 -6 346 230 14 81 chr6 19182773 19182901 -170096653 - L1MC4 LINE L1 -85 7957 7839 2191 97 3 39 chr6 19182901 19183210 -170096344 - AluSq SINE Alu -15 298 1 346 230 14 81 chr6 19183210 19183229 -170096325 - L1MC4 LINE L1 -203 7839 7820 1031 255 157 39 chr6 19183638 19183719 -170095835 - L1ME2 LINE L1 -212 5952 5882 482 190 0 50 chr6 19183719 19183840 -170095714 - L1MB8 LINE L1 -1 6177 6063 1031 255 157 39 chr6 19183840 19184430 -170095124 - L1ME2 LINE L1 -282 5882 5175 787 144 0 9 chr6 19184508 19184619 -170094935 + FLAM_C SINE Alu 9 118 -25 392 323 106 12 chr6 19184637 19184968 -170094586 - L1ME2 LINE L1 -1034 5112 4751 406 270 110 42 chr6 19185029 19185266 -170094288 - L1ME2 LINE L1 -1529 4617 4365 * 1210 222 115 8 chr6 19185249 19185605 -170093949 - L1ME3A LINE L1 -1 6169 5776 832 189 8 15 chr6 19185633 19185765 -170093789 - FLAM_C SINE Alu -11 132 2 355 307 104 0 chr6 19185810 19185973 -170093581 - L1ME2 LINE L1 -1811 4335 4156 25 31 0 0 chr6 19186023 19186055 -170093499 + AT_rich Low_complexity Low_complexity 1 32 0 566 220 0 9 chr6 19187099 19187208 -170092346 + MER5A DNA MER1_type 2 109 -80 1156 60 0 0 chr6 19187209 19187342 -170092212 + AluSq/x SINE Alu 1 133 -179 196 295 13 51 chr6 19187352 19187430 -170092124 - MER5A DNA MER1_type -114 75 1 2298 109 0 3 chr6 19187748 19188061 -170091493 - AluSx SINE Alu 0 312 1 387 226 286 8 chr6 19188224 19188357 -170091197 - MIR SINE MIR -61 201 32 216 0 0 0 chr6 19188397 19188421 -170091133 + (TA)n Simple_repeat Simple_repeat 2 25 0 1802 168 10 7 chr6 19188444 19188736 -170090818 - AluJb SINE Alu -18 294 2 2174 144 15 50 chr6 19188972 19189376 -170090178 - MLT1B LTR MaLR 0 390 1 2487 84 6 0 chr6 19189632 19189943 -170089611 + AluSp SINE Alu 1 313 0 412 241 0 0 chr6 19190376 19190463 -170089091 + MER5A DNA MER1_type 26 112 -77 224 119 0 24 chr6 19190550 19190592 -170088962 + (GGA)n Simple_repeat Simple_repeat 2 42 0 * 270 81 0 0 chr6 19190585 19190622 -170088932 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 2162 121 6 47 chr6 19190625 19190690 -170088864 - MER41B LTR ERV1 -286 349 283 2284 54 40 14 chr6 19190690 19190986 -170088568 - AluY SINE Alu -7 304 1 2162 121 6 47 chr6 19190986 19191284 -170088270 - MER41B LTR ERV1 -352 283 1 22 0 0 0 chr6 19191917 19191939 -170087615 + AT_rich Low_complexity Low_complexity 1 22 0 1033 109 0 124 chr6 19192562 19192709 -170086845 + AluJo SINE Alu 1 120 -192 2229 120 7 0 chr6 19192709 19193017 -170086537 + AluSx SINE Alu 1 310 -2 1033 109 0 124 chr6 19193017 19193062 -170086492 + AluJo SINE Alu 120 169 -143 1614 173 7 7 chr6 19193580 19193857 -170085697 - AluJb SINE Alu -31 281 5 391 238 79 0 chr6 19194075 19194176 -170085378 + MIR SINE MIR 127 235 -27 198 150 0 0 chr6 19194266 19194306 -170085248 + (GA)n Simple_repeat Simple_repeat 1 40 0 1697 137 79 14 chr6 19194329 19194607 -170084947 + AluSg SINE Alu 1 296 -14 272 181 64 106 chr6 19195191 19195285 -170084269 - MER5B DNA MER1_type 0 178 89 1833 148 7 7 chr6 19195955 19196252 -170083302 - AluJb SINE Alu -15 297 1 1393 124 42 28 chr6 19197224 19197441 -170082113 + AluJo SINE Alu 12 231 -81 227 244 39 26 chr6 19197609 19197687 -170081867 - MIR3 SINE MIR -49 159 81 1227 176 5 0 chr6 19198614 19198802 -170080752 - MER5A DNA MER1_type 0 189 1 342 200 43 70 chr6 19198815 19198930 -170080624 + L1ME4a LINE L1 5961 6072 -49 775 199 0 29 chr6 19199073 19199209 -170080345 + FLAM_A SINE Alu 2 133 0 1413 182 10 55 chr6 19200915 19201057 -170078497 + AluJo SINE Alu 1 125 -187 2559 48 0 0 chr6 19201057 19201352 -170078202 + AluY SINE Alu 1 295 -16 1413 182 10 55 chr6 19201352 19201500 -170078054 + AluJo SINE Alu 125 278 -34 219 36 0 0 chr6 19201669 19201697 -170077857 + (T)n Simple_repeat Simple_repeat 1 28 0 297 312 8 56 chr6 19202671 19202796 -170076758 + Tigger8 DNA MER2_type 1 119 -547 3148 120 30 84 chr6 19203062 19203604 -170075950 - L1MB3 LINE L1 -3 6180 5671 1947 152 3 7 chr6 19203604 19203901 -170075653 - AluSx SINE Alu -16 296 1 3148 120 30 84 chr6 19203901 19203950 -170075604 - L1MB3 LINE L1 -512 5671 5621 2162 118 3 3 chr6 19204225 19204522 -170075032 + AluSx SINE Alu 1 297 -15 943 270 27 0 chr6 19205315 19205574 -170073980 + L2 LINE L2 2309 2574 -740 314 200 29 14 chr6 19205571 19205641 -170073913 + L2 LINE L2 2911 2981 -332 * 30 27 0 0 chr6 19206638 19206675 -170072879 + AT_rich Low_complexity Low_complexity 1 37 0 189 305 34 0 chr6 19206741 19206800 -170072754 - L2 LINE L2 -15 3298 3238 23 0 0 0 chr6 19207385 19207408 -170072146 + AT_rich Low_complexity Low_complexity 1 23 0 1860 154 0 16 chr6 19207427 19207767 -170071787 - AluJb SINE Alu 0 312 1 953 110 0 0 chr6 19207833 19207951 -170071603 + FLAM_C SINE Alu 1 118 -15 532 251 21 16 chr6 19208188 19208379 -170071175 - L1ME3A LINE L1 -219 5951 5760 383 282 8 8 chr6 19209478 19209609 -170069945 + MER103 DNA DNA 35 165 -1 2268 103 0 0 chr6 19209865 19210165 -170069389 - AluSx SINE Alu -12 300 1 201 108 0 0 chr6 19211493 19211530 -170068024 + (ATGTG)n Simple_repeat Simple_repeat 3 39 0 521 279 99 68 chr6 19211709 19212092 -170067462 - L2 LINE L2 -1 3312 2918 217 304 71 0 chr6 19212463 19212519 -170067035 - L2 LINE L2 0 3272 3213 181 326 81 58 chr6 19212866 19213038 -170066516 - L2 LINE L2 -457 2857 2682 217 238 129 61 chr6 19213107 19213216 -170066338 + MIR SINE MIR 100 223 -39 2277 117 0 0 chr6 19213216 19213524 -170066030 + AluSx SINE Alu 1 308 -4 217 238 129 61 chr6 19213524 19213561 -170065993 + MIR SINE MIR 223 256 -6 1633 154 88 0 chr6 19214792 19215077 -170064477 - AluJb SINE Alu -2 310 1 531 224 194 18 chr6 19215347 19215517 -170064037 - MIR SINE MIR -43 219 20 25 31 0 0 chr6 19216350 19216382 -170063172 + AT_rich Low_complexity Low_complexity 1 32 0 370 169 78 0 chr6 19216632 19216709 -170062845 - MER5C DNA MER1_type -2 322 240 180 125 0 0 chr6 19217638 19217670 -170061884 + (TA)n Simple_repeat Simple_repeat 2 33 0 843 146 15 15 chr6 19217672 19217809 -170061745 + AluJo SINE Alu 1 137 -175 2775 87 19 46 chr6 19218501 19218702 -170060852 - L1MA2 LINE L1 0 6304 6118 1907 133 7 3 chr6 19218702 19218988 -170060566 + AluSx SINE Alu 10 296 -16 2775 87 19 46 chr6 19218988 19219202 -170060352 - L1MA2 LINE L1 -186 6118 5900 2422 80 0 3 chr6 19219694 19220005 -170059549 + AluY SINE Alu 1 310 -1 1995 120 39 0 chr6 19220861 19221144 -170058410 - AluSx SINE Alu -18 294 1 2402 91 3 0 chr6 19221196 19221503 -170058051 - AluSx SINE Alu -4 308 1 427 260 155 27 chr6 19221664 19221883 -170057671 - MIR SINE MIR -8 254 8 1760 172 7 14 chr6 19222143 19222439 -170057115 - AluJo SINE Alu -18 294 1 599 300 36 47 chr6 19223428 19223681 -170055873 + MIR SINE MIR 11 260 -2 1832 181 3 13 chr6 19224004 19224319 -170055235 + AluJo SINE Alu 1 312 0 223 200 15 15 chr6 19224327 19224392 -170055162 + GA-rich Low_complexity Low_complexity 4 68 0 203 355 22 36 chr6 19224997 19225135 -170054419 + L2 LINE L2 2926 3061 -211 234 277 96 48 chr6 19225323 19225489 -170054065 + L2 LINE L2 3130 3303 -10 1732 111 0 21 chr6 19225507 19225742 -170053812 + MER30 DNA MER1_type 1 230 0 2366 110 0 0 chr6 19226261 19226571 -170052983 - AluSx SINE Alu -2 310 1 1682 179 0 52 chr6 19226573 19226898 -170052656 - AluJb SINE Alu -3 309 2 476 239 18 61 chr6 19227431 19227594 -170051960 - MER103 DNA DNA 0 166 11 1101 141 0 18 chr6 19228747 19228917 -170050637 - AluSg/x SINE Alu -17 293 127 1734 155 11 33 chr6 19228997 19229330 -170050224 - MER93a LTR ERV1 0 402 29 2536 62 0 13 chr6 19229652 19229960 -170049594 - AluY SINE Alu -7 304 1 221 284 0 0 chr6 19230012 19230100 -170049454 + (TGAA)n Simple_repeat Simple_repeat 1 88 0 1649 190 30 3 chr6 19231629 19231924 -170047630 + AluJo SINE Alu 1 303 -9 41 48 0 0 chr6 19232164 19232226 -170047328 + AT_rich Low_complexity Low_complexity 1 62 0 385 283 83 0 chr6 19232817 19232937 -170046617 - MIR SINE MIR -76 186 57 1518 191 0 8 chr6 19234521 19234762 -170044792 - MER8 DNA MER2_type 0 239 1 307 315 45 0 chr6 19234846 19234957 -170044597 + L1ME LINE L1 50 165 -5954 385 291 92 72 chr6 19235232 19235731 -170043823 + L1ME LINE L1 481 989 -5130 1537 157 53 53 chr6 19235918 19236255 -170043299 + L1MC2 LINE L1 5991 6327 -17 1203 245 109 60 chr6 19236264 19236339 -170043215 + L1M4 LINE L1 3840 3910 -2236 1565 155 79 7 chr6 19236339 19236616 -170042938 + AluJo SINE Alu 1 297 -15 2379 97 0 0 chr6 19236624 19236924 -170042630 + AluSg SINE Alu 6 305 -5 1203 245 109 60 chr6 19236924 19237436 -170042118 + L1M4 LINE L1 3916 4465 -1681 2829 222 76 7 chr6 19237573 19238259 -170041295 - MER21B LTR ERV1 -52 811 79 1481 135 31 58 chr6 19238981 19239241 -170040313 - AluJo SINE Alu -19 293 41 1683 166 7 32 chr6 19239797 19239938 -170039616 + AluJo SINE Alu 1 144 -168 252 0 0 0 chr6 19239938 19239966 -170039588 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1683 166 7 32 chr6 19239966 19240132 -170039422 + AluJo SINE Alu 144 300 -12 1529 108 5 0 chr6 19240550 19240754 -170038800 - AluSp SINE Alu -12 301 97 680 121 91 0 chr6 19240785 19240884 -170038670 - AluSp SINE Alu -204 109 2 400 187 13 0 chr6 19241028 19241103 -170038451 - MER2 DNA MER2_type -269 76 1 471 201 157 7 chr6 19241707 19241911 -170037643 + MER33 DNA MER1_type 1 164 -2460 2135 138 0 3 chr6 19241911 19242215 -170037339 - AluSx SINE Alu -9 303 1 471 201 157 7 chr6 19242215 19242295 -170037259 + MER33 DNA MER1_type 164 363 0 2229 92 0 39 chr6 19242751 19243056 -170036498 + AluSq SINE Alu 1 293 -20 1009 282 50 12 chr6 19243388 19243752 -170035802 - MLT1I LTR MaLR -14 395 50 751 135 0 0 chr6 19243938 19244042 -170035512 - AluSp/q SINE Alu -14 299 196 223 279 0 0 chr6 19246335 19246378 -170033176 + MIR SINE MIR 200 242 -20 1064 198 0 0 chr6 19246819 19246986 -170032568 - FAM SINE Alu -8 167 1 1704 176 51 0 chr6 19247382 19247678 -170031876 - AluJo SINE Alu 0 312 2 207 189 0 0 chr6 19247790 19247827 -170031727 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2047 136 7 0 chr6 19247895 19248190 -170031364 + AluSx SINE Alu 1 297 -15 2135 130 3 0 chr6 19248743 19249042 -170030512 - AluSx SINE Alu -12 300 1 1728 114 4 12 chr6 19249053 19249299 -170030255 - AluSc SINE Alu -22 287 44 1183 173 122 43 chr6 19249851 19250106 -170029448 + AluJo SINE Alu 1 275 -37 2353 98 0 3 chr6 19250106 19250412 -170029142 - AluSx SINE Alu -7 305 1 1715 141 46 33 chr6 19250501 19250807 -170028747 + AluJo SINE Alu 1 310 -2 210 291 0 76 chr6 19251183 19251262 -170028292 - L3 LINE CR1 -4 1573 1501 285 309 118 37 chr6 19251403 19251539 -170028015 - L2 LINE L2 -1 3271 3125 838 156 14 14 chr6 19252179 19252320 -170027234 + FLAM_C SINE Alu 3 143 0 350 247 31 0 chr6 19252453 19252550 -170027004 + L2 LINE L2 2899 2998 -315 347 202 223 0 chr6 19252727 19252821 -170026733 + L2 LINE L2 3199 3313 0 210 118 0 0 chr6 19253075 19253109 -170026445 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 487 302 62 26 chr6 19253143 19253335 -170026219 + L3b LINE CR1 1354 1552 -31 1900 144 18 0 chr6 19253822 19254099 -170025455 + AluJb SINE Alu 1 282 -30 306 0 0 0 chr6 19254099 19254133 -170025421 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 230 179 22 187 chr6 19254712 19254846 -170024708 + MER103 DNA DNA 13 124 -42 2391 113 0 0 chr6 19255002 19255313 -170024241 + AluSx SINE Alu 1 311 -1 4584 122 17 3 chr6 19255442 19255731 -170023823 + L1PB1 LINE L1 5493 5777 -374 369 62 0 0 chr6 19255731 19255779 -170023775 + (TG)n Simple_repeat Simple_repeat 1 48 0 4584 122 17 3 chr6 19255779 19256139 -170023415 + L1PB1 LINE L1 5777 6151 0 1160 97 0 34 chr6 19256150 19256326 -170023228 + AluSg/x SINE Alu 131 300 -12 225 0 0 0 chr6 19256468 19256493 -170023061 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1389 181 57 37 chr6 19256865 19257164 -170022390 + AluJo SINE Alu 1 305 -7 190 359 97 19 chr6 19257509 19257612 -170021942 + MIR SINE MIR 25 135 -127 1993 132 28 0 chr6 19257823 19258112 -170021442 + AluSx SINE Alu 3 299 -13 1526 152 4 0 chr6 19258115 19258359 -170021195 - L1MA8 LINE L1 -3 6288 6044 693 171 0 0 chr6 19259498 19259615 -170019939 + L1MA8 LINE L1 6163 6279 -12 419 284 86 46 chr6 19259674 19259867 -170019687 + MIR SINE MIR 8 203 -59 777 248 27 31 chr6 19261146 19261368 -170018186 + MIR SINE MIR 13 233 -29 411 217 96 17 chr6 19261476 19261591 -170017963 + MIR3 SINE MIR 62 185 -23 2247 80 50 7 chr6 19261737 19262036 -170017518 - AluSx SINE Alu 0 312 1 602 242 258 5 chr6 19263089 19263287 -170016267 + MIR SINE MIR 12 259 -3 483 87 0 0 chr6 19263859 19263928 -170015626 + (TA)n Simple_repeat Simple_repeat 2 70 0 421 288 8 0 chr6 19264119 19264237 -170015317 - MIR SINE MIR -36 226 108 1516 170 3 42 chr6 19265982 19266265 -170013289 + AluJo SINE Alu 23 294 -18 223 27 27 27 chr6 19266933 19266970 -170012584 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1323 165 88 25 chr6 19267635 19267772 -170011782 - AluJo SINE Alu -9 303 176 282 29 0 0 chr6 19267772 19267807 -170011747 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2241 95 0 0 chr6 19267807 19268090 -170011464 - AluY SINE Alu -28 283 1 1323 165 88 25 chr6 19268090 19268236 -170011318 - AluJo SINE Alu -135 177 1 431 310 136 0 chr6 19268382 19268566 -170010988 - MIR SINE MIR -1 261 53 826 220 6 0 chr6 19268584 19268752 -170010802 + FRAM SINE Alu 8 176 0 365 345 83 31 chr6 19268752 19269103 -170010451 + L1ME4a LINE L1 5030 5398 -748 364 266 56 28 chr6 19269287 19269430 -170010124 + L1ME4a LINE L1 5719 5865 -256 444 75 0 0 chr6 19270016 19270069 -170009485 - Alu SINE Alu -15 296 244 2196 117 7 0 chr6 19270270 19270569 -170008985 + AluSx SINE Alu 1 301 -11 346 323 81 0 chr6 19270712 19270836 -170008718 + MIR SINE MIR 58 191 -71 2083 92 4 4 chr6 19270845 19271118 -170008436 + AluSg SINE Alu 24 296 -14 23 0 0 0 chr6 19271118 19271141 -170008413 + AT_rich Low_complexity Low_complexity 1 23 0 845 165 0 0 chr6 19271303 19271436 -170008118 - FLAM_C SINE Alu -10 133 1 404 276 91 67 chr6 19272556 19272615 -170006939 - L1ME4a LINE L1 -128 5993 5937 393 117 0 0 chr6 19272615 19272675 -170006879 + (CA)n Simple_repeat Simple_repeat 1 60 0 404 276 91 67 chr6 19272675 19273146 -170006408 - L1ME4a LINE L1 -184 5937 5450 1871 132 80 47 chr6 19273146 19273509 -170006045 - THE1C LTR MaLR 0 375 1 404 276 91 67 chr6 19273509 19273528 -170006026 - L1ME4a LINE L1 -671 5450 5433 250 324 216 0 chr6 19273707 19273818 -170005736 - L2 LINE L2 0 3272 3138 234 325 58 33 chr6 19274176 19274296 -170005258 - L2 LINE L2 -11 3261 3139 1632 164 11 0 chr6 19274746 19275009 -170004545 + AluJo SINE Alu 1 266 -46 372 282 53 23 chr6 19275705 19275836 -170003718 - MER5B DNA MER1_type -13 165 31 2192 128 10 0 chr6 19275904 19276210 -170003344 + AluSx SINE Alu 1 309 -3 348 174 80 123 chr6 19276215 19276319 -170003235 - L1ME4a LINE L1 -8 6113 6015 2038 134 3 0 chr6 19276319 19276602 -170002952 + AluSx SINE Alu 1 284 -28 348 174 80 123 chr6 19276602 19276635 -170002919 - L1ME4a LINE L1 -106 6015 5982 225 0 0 0 chr6 19276836 19276861 -170002693 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 765 273 82 24 chr6 19276990 19277427 -170002127 - L1ME4a LINE L1 -220 5950 5479 258 279 61 54 chr6 19277477 19277624 -170001930 + MIR SINE MIR 79 226 -36 1741 182 7 3 chr6 19278038 19278329 -170001225 + AluJb SINE Alu 1 292 -20 350 238 61 110 chr6 19279696 19279860 -169999694 + MIR SINE MIR 35 197 -11 250 237 114 9 chr6 19279809 19279923 -169999631 - L2 LINE L2 -5 3308 3183 * 797 199 0 0 chr6 19280631 19280767 -169998787 + FLAM_C SINE Alu 2 137 -6 1867 140 61 0 chr6 19281554 19281832 -169997722 + AluSx SINE Alu 1 295 -17 759 184 0 0 chr6 19281854 19281968 -169997586 + AluJb SINE Alu 6 119 -193 1358 140 5 0 chr6 19281998 19282198 -169997356 + AluSg/x SINE Alu 105 305 -5 2784 95 31 0 chr6 19282253 19282642 -169996912 + L1MA5 LINE L1 5900 6300 0 2277 90 3 3 chr6 19282645 19282935 -169996619 + AluSq SINE Alu 1 290 -23 358 236 94 0 chr6 19282940 19283046 -169996508 + MIR SINE MIR 146 261 -1 475 259 136 34 chr6 19283655 19283891 -169995663 - MIR SINE MIR 0 262 3 865 170 0 15 chr6 19284136 19284271 -169995283 - FLAM_C SINE Alu 0 133 1 221 172 17 52 chr6 19284408 19284466 -169995088 - MIR SINE MIR -108 154 99 1318 141 0 0 chr6 19284501 19284685 -169994869 + AluSq SINE Alu 1 184 -129 216 0 0 0 chr6 19284691 19284715 -169994839 + (A)n Simple_repeat Simple_repeat 1 24 0 2284 112 56 36 chr6 19285437 19285794 -169993760 + THE1B LTR MaLR 1 364 0 383 269 131 7 chr6 19286175 19286320 -169993234 - MER103 DNA DNA -3 163 1 2348 103 3 0 chr6 19286682 19286993 -169992561 - AluSx SINE Alu 0 312 1 326 272 11 29 chr6 19287282 19287417 -169992137 - MLT1J LTR MaLR -310 201 99 1994 142 0 7 chr6 19288406 19288702 -169990852 + AluJo SINE Alu 1 294 -18 306 0 0 0 chr6 19288705 19288722 -169990832 + (CA)n Simple_repeat Simple_repeat 1 51 0 306 0 0 0 chr6 19288722 19288756 -169990798 + (CA)n Simple_repeat Simple_repeat 2 35 0 1077 208 196 43 chr6 19289223 19289392 -169990162 - MER34C LTR ERV1 0 585 443 1784 161 55 0 chr6 19289392 19289683 -169989871 + AluJb SINE Alu 1 307 -5 1077 208 196 43 chr6 19289683 19289951 -169989603 - MER34C LTR ERV1 -142 443 81 1297 156 76 15 chr6 19290501 19290764 -169988790 - L1MB8 LINE L1 0 6178 5900 2164 164 40 5 chr6 19290765 19291168 -169988386 - MLT1C LTR MaLR 0 467 51 1302 152 11 42 chr6 19291195 19291458 -169988096 - L1MB8 LINE L1 -282 5902 5648 1238 194 10 68 chr6 19291498 19291637 -169987917 - L1PB4 LINE L1 -7 6149 6034 2197 117 0 16 chr6 19291637 19291946 -169987608 + AluSx SINE Alu 1 304 -8 1238 194 10 68 chr6 19291946 19292100 -169987454 - L1PB4 LINE L1 -122 6034 5873 23 0 0 0 chr6 19292100 19292123 -169987431 + AT_rich Low_complexity Low_complexity 1 23 0 2282 77 3 27 chr6 19292422 19292722 -169986832 - AluSc SINE Alu -16 293 1 2106 109 7 17 chr6 19292775 19293077 -169986477 - AluSx SINE Alu -3 309 11 843 96 178 0 chr6 19293971 19294106 -169985448 + MSTA LTR MaLR 1 159 -269 769 95 0 9 chr6 19294105 19294210 -169985344 + MSTA LTR MaLR 325 428 0 * 203 297 68 0 chr6 19294894 19294968 -169984586 - MIR SINE MIR -2 260 182 311 203 14 0 chr6 19295160 19295229 -169984325 + MIR SINE MIR 193 262 0 1764 127 48 60 chr6 19295531 19295845 -169983709 - AluSg SINE Alu 0 310 1 2346 100 0 0 chr6 19296883 19297183 -169982371 - AluSx SINE Alu -12 300 1 1773 163 3 13 chr6 19297237 19297544 -169982010 - AluJb SINE Alu -8 304 1 2212 108 3 13 chr6 19297713 19298027 -169981527 - AluSx SINE Alu -1 311 1 252 77 0 0 chr6 19298075 19298114 -169981440 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1803 122 0 4 chr6 19298117 19298364 -169981190 - AluSx SINE Alu -28 284 39 590 246 35 53 chr6 19298682 19298910 -169980644 + L2 LINE L2 3073 3296 -17 204 40 0 0 chr6 19298914 19298939 -169980615 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 263 312 70 96 chr6 19299082 19299396 -169980158 + L2 LINE L2 2957 3262 -10 621 209 29 14 chr6 19300246 19300385 -169979169 - Charlie1 DNA MER1_type -1 2760 2620 * 889 249 38 21 chr6 19300366 19300603 -169978951 - Charlie1 DNA MER1_type -2519 242 2 832 233 85 5 chr6 19301301 19301524 -169978030 + Charlie1 DNA MER1_type 2 242 -2519 2004 111 7 4 chr6 19301525 19301804 -169977750 + AluSx SINE Alu 16 295 -17 339 240 48 75 chr6 19301955 19302101 -169977453 - MIR SINE MIR -42 220 79 401 206 22 73 chr6 19302916 19302935 -169976619 - L1MC5 LINE L1 -54 7907 7889 1752 170 0 29 chr6 19302935 19303241 -169976313 + AluJo SINE Alu 1 297 -15 401 206 22 73 chr6 19303241 19303357 -169976197 - L1MC5 LINE L1 -72 7889 7779 1797 157 3 13 chr6 19303360 19303659 -169975895 + AluJb SINE Alu 1 296 -16 1015 124 7 0 chr6 19303663 19303839 -169975715 - AluSg/x SINE Alu 0 314 138 809 209 50 34 chr6 19303847 19304144 -169975410 - L1MC5 LINE L1 -182 7779 7478 992 239 76 38 chr6 19304177 19304574 -169974980 - L1MC5 LINE L1 -466 7495 7084 2423 75 0 7 chr6 19305971 19306279 -169973275 - AluY SINE Alu -5 306 1 2058 125 17 3 chr6 19306548 19306843 -169972711 + AluSx SINE Alu 1 299 -13 973 127 0 0 chr6 19306855 19306989 -169972565 + AluJo SINE Alu 2 135 -177 2012 162 0 0 chr6 19306989 19307291 -169972263 + AluSx SINE Alu 1 302 -10 185 254 14 0 chr6 19307291 19307362 -169972192 + GA-rich Low_complexity Low_complexity 2 73 0 2077 95 41 24 chr6 19307425 19307719 -169971835 + AluSq SINE Alu 1 299 -14 1983 152 0 10 chr6 19308414 19308716 -169970838 + AluSx SINE Alu 1 299 -13 324 0 0 0 chr6 19309168 19309204 -169970350 + (CA)n Simple_repeat Simple_repeat 2 37 0 873 139 0 0 chr6 19309597 19309719 -169969835 + FLAM_C SINE Alu 2 123 -20 2196 120 7 0 chr6 19311176 19311475 -169968079 - AluSx SINE Alu -11 301 1 2054 54 0 0 chr6 19311518 19311758 -169967796 + AluY SINE Alu 61 300 -11 508 314 58 6 chr6 19311969 19312141 -169967413 + MIR SINE MIR 37 217 -45 925 154 0 0 chr6 19314140 19314270 -169965284 + AluJo/FLAM SINE Alu 2 131 -171 1000 138 14 0 chr6 19314270 19314284 -169965270 + AluJo SINE Alu 3 147 -165 1397 156 5 0 chr6 19314307 19314519 -169965035 + AluJo SINE Alu 54 266 -46 2213 93 3 35 chr6 19314539 19314852 -169964702 + AluSq SINE Alu 1 303 -10 7354 103 20 10 chr6 19314923 19315920 -169963634 + LTR13 LTR ERVK 1 1007 0 277 313 125 0 chr6 19316015 19316143 -169963411 - MIR SINE MIR -71 191 48 2339 88 7 0 chr6 19316210 19316506 -169963048 + AluSg SINE Alu 1 298 -12 2543 60 3 0 chr6 19316506 19316808 -169962746 + AluY SINE Alu 1 303 -8 458 262 175 19 chr6 19316818 19317024 -169962530 - MIR SINE MIR -11 251 14 2119 104 0 43 chr6 19317255 19317554 -169962000 - AluSq SINE Alu -22 291 6 4957 144 17 6 chr6 19317749 19318569 -169960985 + L1PA15 LINE L1 5328 6156 -9 1040 193 0 0 chr6 19318731 19318897 -169960657 + FAM SINE Alu 1 166 -9 270 176 0 0 chr6 19318907 19318958 -169960596 + GA-rich Low_complexity Low_complexity 2 52 0 325 252 110 52 chr6 19319325 19319480 -169960074 + L2 LINE L2 3150 3313 0 4006 115 6 9 chr6 19319762 19320291 -169959263 + MER1A DNA MER1_type 1 527 0 960 119 0 15 chr6 19320677 19320811 -169958743 - FLAM_C SINE Alu 0 133 2 375 331 46 20 chr6 19321058 19321209 -169958345 - L2 LINE L2 -1 3271 3117 243 0 0 0 chr6 19322343 19322370 -169957184 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2002 136 4 0 chr6 19322372 19322652 -169956902 - AluSx SINE Alu -31 281 1 4788 61 20 16 chr6 19322836 19323866 -169955688 - MER11A LTR ERVK 0 1266 1 2225 101 7 0 chr6 19323873 19324159 -169955395 - AluSx SINE Alu -24 288 1 622 255 112 66 chr6 19324308 19324524 -169955030 + L1ME4a LINE L1 5615 5820 -301 1776 158 0 42 chr6 19324524 19324834 -169954720 + AluJo SINE Alu 1 297 -15 622 255 112 66 chr6 19324834 19325099 -169954455 + L1ME4a LINE L1 5820 6118 -3 342 0 0 0 chr6 19325348 19325386 -169954168 + (CA)n Simple_repeat Simple_repeat 2 39 0 1224 105 28 22 chr6 19325915 19326096 -169953458 - AluSg/x SINE Alu 0 312 131 23 0 0 0 chr6 19326174 19326197 -169953357 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr6 19326438 19326462 -169953092 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2406 54 0 0 chr6 19326582 19326886 -169952668 - AluY SINE Alu 0 304 1 1042 174 0 87 chr6 19327447 19327523 -169952031 + AluJb SINE Alu 73 154 -158 2162 100 0 7 chr6 19327523 19327843 -169951711 + AluSg SINE Alu 1 318 0 1042 174 0 87 chr6 19327843 19328007 -169951547 + AluJb SINE Alu 154 293 -19 2530 40 7 0 chr6 19328167 19328463 -169951091 + AluSp SINE Alu 1 298 -15 183 324 90 9 chr6 19328795 19328906 -169950648 + L3 LINE CR1 1078 1197 -380 353 295 62 8 chr6 19329022 19329151 -169950403 + L2 LINE L2 3178 3313 0 1956 106 10 44 chr6 19329216 19329547 -169950007 - AluSx SINE Alu 0 321 1 2139 127 0 10 chr6 19329725 19329858 -169949696 + AluSg SINE Alu 1 134 -176 2322 98 0 0 chr6 19329858 19330153 -169949401 + AluSg SINE Alu 1 295 -15 2139 127 0 10 chr6 19330153 19330319 -169949235 + AluSg SINE Alu 134 297 -13 386 304 170 13 chr6 19330321 19330633 -169948921 + L3 LINE CR1 1213 1573 -4 1783 152 14 20 chr6 19332843 19333139 -169946415 - AluJo SINE Alu -14 298 5 391 308 91 66 chr6 19333296 19333428 -169946126 + MIR3 SINE MIR 5 145 -63 2475 73 0 0 chr6 19333428 19333731 -169945823 + AluY SINE Alu 1 303 -8 391 308 91 66 chr6 19333731 19333796 -169945758 + MIR3 SINE MIR 145 207 -1 71 21 0 10 chr6 19334175 19334217 -169945337 + AT_rich Low_complexity Low_complexity 1 42 -53 1463 86 16 0 chr6 19334217 19334404 -169945150 + AluSg SINE Alu 1 190 -120 71 21 0 10 chr6 19334404 19334457 -169945097 + AT_rich Low_complexity Low_complexity 42 95 0 794 109 0 0 chr6 19334457 19334567 -169944987 + AluSg/x SINE Alu 201 310 0 378 265 118 0 chr6 19334582 19334684 -169944870 + MIR SINE MIR 50 163 -99 1020 228 75 21 chr6 19334689 19335022 -169944532 + L1ME2 LINE L1 4871 5221 -925 2034 197 100 30 chr6 19335026 19335142 -169944412 + L1ME2 LINE L1 5581 5687 -483 2209 96 0 45 chr6 19335142 19335456 -169944098 - AluSx SINE Alu -12 300 1 2034 197 100 30 chr6 19335456 19335882 -169943672 + L1ME2 LINE L1 5687 6170 0 328 267 0 40 chr6 19335893 19335994 -169943560 + MIR SINE MIR 166 262 0 23 0 0 0 chr6 19336681 19336704 -169942850 + AT_rich Low_complexity Low_complexity 1 23 0 1843 175 3 10 chr6 19336818 19337126 -169942428 - AluJb SINE Alu -6 306 1 1931 139 7 7 chr6 19337375 19337670 -169941884 + AluSx SINE Alu 1 295 -17 384 264 76 61 chr6 19338218 19338415 -169941139 + MIR3 SINE MIR 9 208 0 2126 112 20 3 chr6 19338539 19338833 -169940721 - AluSg SINE Alu -9 301 3 2175 110 3 7 chr6 19338836 19339137 -169940417 - AluSx SINE Alu -11 301 2 227 297 103 62 chr6 19340060 19340205 -169939349 + MIR3 SINE MIR 45 195 -13 1685 181 0 10 chr6 19340326 19340624 -169938930 - AluJo SINE Alu -4 308 14 348 49 0 0 chr6 19341170 19341211 -169938343 + LTR8 LTR ERV1 547 587 -104 195 42 0 0 chr6 19341211 19341235 -169938319 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2423 75 0 3 chr6 19341734 19342028 -169937526 + AluSg SINE Alu 1 293 -17 1889 142 7 0 chr6 19343081 19343386 -169936168 - AluJo SINE Alu 0 307 1 2299 104 0 3 chr6 19344131 19344440 -169935114 - AluSx SINE Alu -4 308 1 304 253 80 67 chr6 19344472 19344622 -169934932 - MIR SINE MIR -37 225 74 1192 166 4 26 chr6 19344812 19345041 -169934513 - AluJo SINE Alu -3 309 86 201 339 138 0 chr6 19346113 19346222 -169933332 - MER5A DNA MER1_type -5 184 61 1644 155 23 20 chr6 19346312 19346615 -169932939 - AluJo SINE Alu -4 308 5 281 250 15 0 chr6 19347376 19347444 -169932110 - MER5A DNA MER1_type -71 118 50 615 292 62 19 chr6 19347720 19347980 -169931574 + L3 LINE CR1 1305 1575 -2 2121 108 0 0 chr6 19348089 19348401 -169931153 - AluSg1 SINE Alu 0 312 1 2228 115 0 3 chr6 19348522 19348826 -169930728 + AluSc SINE Alu 1 303 -6 1755 159 10 13 chr6 19348832 19349133 -169930421 + AluJo SINE Alu 5 304 -8 770 208 0 0 chr6 19349134 19349259 -169930295 + FLAM_C SINE Alu 3 127 -16 240 234 164 32 chr6 19350249 19350387 -169929167 - MIR SINE MIR -67 141 30 2405 55 7 23 chr6 19350711 19351021 -169928533 + AluY SINE Alu 1 305 -6 2667 51 3 3 chr6 19351185 19351498 -169928056 + AluSp SINE Alu 1 313 0 198 0 0 0 chr6 19351498 19351520 -169928034 + (TA)n Simple_repeat Simple_repeat 2 23 0 984 272 8 12 chr6 19351971 19352221 -169927333 - MIR SINE MIR 0 262 14 1886 140 11 4 chr6 19352590 19352896 -169926658 - AluSg SINE Alu 0 309 2 22 56 0 0 chr6 19352898 19352934 -169926620 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr6 19353011 19353068 -169926486 + AT_rich Low_complexity Low_complexity 1 57 0 2118 97 13 30 chr6 19353073 19353373 -169926181 + AluSx SINE Alu 1 295 -17 607 271 125 7 chr6 19354158 19354439 -169925115 + L1M4 LINE L1 2708 3021 -3125 2286 88 14 0 chr6 19354582 19354878 -169924676 + AluSp SINE Alu 4 303 -10 21 0 0 0 chr6 19354895 19354916 -169924638 + AT_rich Low_complexity Low_complexity 1 21 0 585 130 0 0 chr6 19354941 19355018 -169924536 + FLAM_C SINE Alu 37 113 -30 253 173 210 12 chr6 19355028 19355109 -169924445 + L1M4 LINE L1 3364 3460 -2686 289 217 0 0 chr6 19355214 19355274 -169924280 + L1M4 LINE L1 4604 4663 -1483 2299 107 3 0 chr6 19355965 19356263 -169923291 - AluSq SINE Alu -12 301 3 257 328 46 23 chr6 19356475 19356606 -169922948 - L2 LINE L2 -6 3307 3174 298 310 62 31 chr6 19356718 19356847 -169922707 - MER94 DNA DNA 0 134 2 965 167 14 45 chr6 19358325 19358547 -169921007 - AluJo SINE Alu -13 299 85 771 215 0 0 chr6 19359182 19359312 -169920242 - FLAM_C SINE Alu -3 130 1 23 33 0 0 chr6 19359816 19359846 -169919708 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr6 19360372 19360395 -169919159 + (A)n Simple_repeat Simple_repeat 1 23 0 297 281 23 22 chr6 19361993 19362107 -169917447 - MIR SINE MIR -40 168 51 2421 91 0 0 chr6 19363203 19363501 -169916053 + AluSq SINE Alu 2 299 -14 836 206 0 7 chr6 19364038 19364184 -169915370 + FRAM SINE Alu 1 145 -31 191 32 65 0 chr6 19364185 19364216 -169915338 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2210 88 7 14 chr6 19364219 19364501 -169915053 + AluSp SINE Alu 1 282 -31 325 0 0 0 chr6 19364501 19364537 -169915017 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2210 88 7 14 chr6 19364537 19364550 -169915004 + AluSp SINE Alu 282 294 -19 383 259 26 35 chr6 19364767 19364883 -169914671 + L2 LINE L2 3156 3270 -2 719 166 46 34 chr6 19366962 19367137 -169912417 - MER104 DNA MER2_type 0 180 4 1793 132 50 20 chr6 19367251 19367554 -169912000 - AluSx SINE Alu 0 312 1 2224 101 3 0 chr6 19368245 19368543 -169911011 + AluSx SINE Alu 1 299 -13 728 191 0 0 chr6 19368554 19368669 -169910885 + FLAM_A SINE Alu 2 116 -17 37 0 0 0 chr6 19368670 19368707 -169910847 + AT_rich Low_complexity Low_complexity 1 37 0 2061 108 3 3 chr6 19369074 19369369 -169910185 + AluSp SINE Alu 1 295 -18 749 177 0 8 chr6 19369377 19369501 -169910053 + FLAM_C SINE Alu 2 124 -19 24 0 0 0 chr6 19370293 19370317 -169909237 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr6 19371534 19371557 -169907997 + (TG)n Simple_repeat Simple_repeat 2 24 0 577 231 51 39 chr6 19371680 19371836 -169907718 - MIR SINE MIR 0 262 105 2457 46 3 3 chr6 19372874 19373180 -169906374 + AluY SINE Alu 1 306 -5 2344 97 0 0 chr6 19373249 19373559 -169905995 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr6 19373559 19373581 -169905973 + AT_rich Low_complexity Low_complexity 1 22 0 2200 104 10 3 chr6 19373701 19374010 -169905544 - AluSq SINE Alu -2 311 1 2321 57 7 3 chr6 19374110 19374407 -169905147 - AluY SINE Alu -13 298 1 188 322 167 0 chr6 19374982 19375072 -169904482 + MIR3 SINE MIR 55 159 -49 1307 160 71 15 chr6 19375073 19375342 -169904212 + Charlie1b DNA MER1_type 1 284 -239 26 30 0 0 chr6 19375419 19375452 -169904102 + AT_rich Low_complexity Low_complexity 1 33 0 2120 129 0 0 chr6 19375563 19375873 -169903681 + AluSx SINE Alu 1 310 -2 1191 123 0 0 chr6 19375873 19376043 -169903511 + AluSg/x SINE Alu 132 301 -9 1377 182 45 38 chr6 19376141 19376496 -169903058 - MLT1F1 LTR MaLR -151 391 1 1254 183 3 69 chr6 19376733 19377022 -169902532 - AluJb SINE Alu -42 270 1 26 0 0 0 chr6 19377400 19377426 -169902128 + AT_rich Low_complexity Low_complexity 1 26 0 2026 113 3 10 chr6 19378063 19378355 -169901199 + AluSq SINE Alu 1 290 -23 653 191 29 52 chr6 19378793 19378947 -169900607 - FLAM_C SINE Alu 0 151 1 2007 134 3 0 chr6 19378985 19379284 -169900270 + AluSx SINE Alu 1 300 -12 531 244 23 8 chr6 19379314 19379445 -169900109 - MIR SINE MIR -49 213 81 2082 71 57 4 chr6 19379482 19379763 -169899791 + AluY SINE Alu 1 296 -15 2056 84 70 0 chr6 19379778 19380065 -169899489 + AluSg SINE Alu 1 307 -3 2092 96 3 20 chr6 19380141 19380276 -169899278 + AluSx SINE Alu 1 137 -175 1958 110 4 7 chr6 19380276 19380579 -169898975 + AluSc SINE Alu 1 302 0 2396 65 3 0 chr6 19380579 19380887 -169898667 + AluY SINE Alu 2 310 -1 2092 96 3 20 chr6 19380887 19381052 -169898502 + AluSx SINE Alu 135 298 -14 1977 129 0 3 chr6 19381313 19381608 -169897946 - AluSx SINE Alu -18 294 1 2177 86 14 0 chr6 19381674 19381964 -169897590 + AluSx SINE Alu 1 294 -18 2251 54 44 7 chr6 19381965 19382260 -169897294 + AluY SINE Alu 1 306 -5 2266 158 84 17 chr6 19382273 19382707 -169896847 + L1MC3 LINE L1 7120 7588 -197 2170 101 0 0 chr6 19382707 19383003 -169896551 + AluSg1 SINE Alu 1 296 -13 2266 158 84 17 chr6 19383003 19383030 -169896524 + L1MC3 LINE L1 7588 7612 -173 306 0 0 0 chr6 19383031 19383065 -169896489 + (TG)n Simple_repeat Simple_repeat 2 35 0 685 129 0 102 chr6 19383126 19383273 -169896281 + AluJb SINE Alu 181 312 0 195 268 49 37 chr6 19383409 19383491 -169896063 - L2 LINE L2 -896 2418 2336 2142 115 0 0 chr6 19383610 19383906 -169895648 - AluSg SINE Alu -14 296 1 388 291 120 6 chr6 19384042 19384200 -169895354 - MIR SINE MIR -56 206 31 2032 124 0 7 chr6 19384210 19384508 -169895046 + AluSx SINE Alu 1 296 -16 1896 168 0 0 chr6 19384628 19384932 -169894622 - AluJb SINE Alu -8 304 1 5746 130 82 99 chr6 19384969 19386557 -169892997 + pTR5 LTR ERV1 743 2438 0 638 137 0 76 chr6 19386573 19386704 -169892850 + FRAM SINE Alu 43 163 -13 200 281 49 12 chr6 19386759 19386841 -169892713 + L2 LINE L2 2973 3057 -215 378 316 43 48 chr6 19387371 19387476 -169892078 - L1M4 LINE L1 -1328 4818 4714 1662 141 53 3 chr6 19387476 19387759 -169891795 - AluJb SINE Alu -15 297 1 378 316 43 48 chr6 19387759 19387810 -169891744 - L1M4 LINE L1 -1432 4714 4661 750 187 0 8 chr6 19387810 19387944 -169891610 - FLAM_A SINE Alu 0 133 1 378 316 43 48 chr6 19387944 19387973 -169891581 - L1M4 LINE L1 -1485 4661 4633 1809 114 48 4 chr6 19387986 19388292 -169891262 + AluSq SINE Alu 1 318 0 382 184 158 0 chr6 19388435 19388511 -169891043 + L1M2a LINE L1 1 88 -7080 732 86 0 0 chr6 19388511 19388604 -169890950 - AluSx SINE Alu -19 290 198 872 54 18 0 chr6 19388605 19388717 -169890837 - AluSx SINE Alu -198 114 1 5209 199 99 98 chr6 19388717 19389300 -169890254 + L1M2a LINE L1 80 661 -6507 2100 101 3 3 chr6 19389300 19389606 -169889948 + AluSx SINE Alu 1 306 -6 5209 199 99 98 chr6 19389606 19390809 -169888745 + L1M2a LINE L1 661 1861 -5307 1677 115 12 112 chr6 19390809 19391147 -169888407 + AluSq SINE Alu 1 304 -9 518 233 92 0 chr6 19391151 19391271 -169888283 + FLAM_A SINE Alu 1 131 -11 5209 199 99 98 chr6 19391271 19391566 -169887988 + L1M2a LINE L1 1863 2229 -4939 207 280 85 42 chr6 19392199 19392317 -169887237 + MIR SINE MIR 84 206 -56 246 51 51 0 chr6 19392630 19392669 -169886885 + L1M2a LINE L1 2235 2275 -4893 * 3219 154 32 15 chr6 19392662 19393279 -169886275 + L1M2a LINE L1 2584 3211 -3957 743 73 0 0 chr6 19393281 19393377 -169886177 + HY3 scRNA scRNA 5 100 -1 1771 127 49 7 chr6 19393445 19393729 -169885825 + AluSx SINE Alu 1 296 -16 1014 182 4 74 chr6 19393735 19393831 -169885723 + L1M2a LINE L1 3234 3335 -3832 1800 172 0 0 chr6 19393831 19394128 -169885426 + AluJo SINE Alu 6 302 -10 1014 182 4 74 chr6 19394128 19394289 -169885265 + L1M2a LINE L1 3335 3473 -3694 5511 71 22 56 chr6 19394302 19395304 -169884250 + SVA Other Other 1 866 -592 5990 60 48 8 chr6 19395436 19396264 -169883290 + SVA Other Other 518 1378 -8 547 196 42 65 chr6 19396267 19396339 -169883215 + L1M2a LINE L1 3465 3537 -3630 2218 103 3 0 chr6 19396339 19396639 -169882915 + AluSp SINE Alu 1 301 -12 547 196 42 65 chr6 19396639 19396734 -169882820 + L1M2a LINE L1 3537 3628 -3539 1082 61 0 0 chr6 19396734 19396866 -169882688 + AluY SINE Alu 1 132 -179 881 160 82 124 chr6 19396866 19397172 -169882382 + L1M2a LINE L1 3608 3900 -3267 1971 107 0 48 chr6 19397172 19397481 -169882073 + AluSq SINE Alu 1 294 -19 248 146 0 0 chr6 19397482 19397523 -169882031 + L1M2a LINE L1 4076 4116 -3051 773 263 65 65 chr6 19397525 19397813 -169881741 + L1MEd LINE L1 960 1247 -5169 1599 167 44 0 chr6 19397813 19398088 -169881466 + AluJo SINE Alu 3 289 -23 773 263 65 65 chr6 19398088 19398384 -169881170 + L1MEd LINE L1 1246 1544 -4872 373 251 29 3 chr6 19398398 19398508 -169881046 + L1MEd LINE L1 1415 1713 -4894 1779 155 0 7 chr6 19498521 19498798 -169780756 + AluJo SINE Alu 30 304 -8 819 173 79 0 chr6 19498882 19499069 -169780485 - FRAM SINE Alu 0 194 1 1618 254 79 31 chr6 19499070 19499676 -169779878 - HAL1 LINE L1 -1806 701 67 295 211 0 0 chr6 19499829 19499886 -169779668 + MER4D LTR ERV1 1 57 -846 652 78 0 0 chr6 19499887 19499977 -169779577 - AluSp/q SINE Alu -3 310 221 2717 144 26 1 chr6 19499979 19500605 -169778949 + MER72 LTR ERV1 49 722 0 1384 162 22 0 chr6 19501240 19501462 -169778092 - AluJo SINE Alu -21 291 65 458 195 66 25 chr6 19501680 19501821 -169777733 - L1ME3 LINE L1 0 6164 6015 1264 160 0 18 chr6 19501878 19502103 -169777451 + AluJo SINE Alu 84 304 -8 307 191 35 29 chr6 19502403 19502576 -169776978 + C-rich Low_complexity Low_complexity 3 176 0 1967 92 4 11 chr6 19503974 19504235 -169775319 + AluSx SINE Alu 39 297 -15 226 238 40 26 chr6 19504876 19505027 -169774527 + (TA)n Simple_repeat Simple_repeat 1 153 0 2498 59 3 3 chr6 19505112 19505415 -169774139 - AluY SINE Alu -8 303 1 286 82 20 0 chr6 19505598 19505647 -169773907 + Alu SINE Alu 259 308 0 2297 107 0 0 chr6 19506271 19506569 -169772985 - AluSg SINE Alu -12 298 1 435 274 78 0 chr6 19506761 19506914 -169772640 - MIR SINE MIR -2 260 96 679 175 32 8 chr6 19506936 19507062 -169772492 + FLAM_A SINE Alu 5 133 0 2304 85 0 10 chr6 19507758 19508053 -169771501 + AluY SINE Alu 1 292 -19 369 136 45 0 chr6 19508133 19508199 -169771355 - AluS SINE Alu 0 301 233 965 163 0 19 chr6 19508199 19508359 -169771195 - AluJo SINE Alu -155 157 1 2146 124 0 3 chr6 19509343 19509641 -169769913 + AluSx SINE Alu 1 297 -15 463 191 75 11 chr6 19510447 19510541 -169769013 - AluSc SINE Alu -10 299 200 870 111 0 0 chr6 19510546 19510663 -169768891 - FLAM_C SINE Alu -15 118 2 2091 241 78 72 chr6 19510707 19511439 -169768115 - L1MEc LINE L1 -2956 3259 2533 1924 147 0 42 chr6 19511439 19511745 -169767809 - AluSx SINE Alu -19 293 1 2091 241 78 72 chr6 19511745 19511962 -169767592 - L1MEc LINE L1 -3682 2533 2339 2047 111 42 0 chr6 19511962 19512250 -169767304 - AluSx SINE Alu -12 300 1 2091 241 78 72 chr6 19512250 19512417 -169767137 - L1MEc LINE L1 -3876 2339 2174 1704 81 14 0 chr6 19512433 19512643 -169766911 - AluY SINE Alu -7 304 92 333 0 0 0 chr6 19512687 19512724 -169766830 + (A)n Simple_repeat Simple_repeat 1 37 0 2105 143 3 10 chr6 19512981 19513295 -169766259 + AluSx SINE Alu 1 312 0 814 181 12 44 chr6 19513309 19513469 -169766085 + FAM SINE Alu 1 45 -4 1361 170 49 99 chr6 19514003 19514327 -169765227 + AluJo SINE Alu 1 308 -4 2345 84 3 7 chr6 19514516 19514814 -169764740 + AluSc SINE Alu 1 297 -12 2011 145 0 0 chr6 19515099 19515389 -169764165 - AluJb SINE Alu -18 294 5 1638 198 10 0 chr6 19515391 19515679 -169763875 - AluJo SINE Alu -21 291 1 3130 194 79 36 chr6 19515736 19516485 -169763069 - L1MB5 LINE L1 -1 6170 5454 2156 128 0 0 chr6 19516485 19516791 -169762763 - AluSx SINE Alu -6 306 1 3130 194 79 36 chr6 19516791 19516854 -169762700 - L1MB5 LINE L1 -717 5454 5395 2135 107 31 3 chr6 19516854 19517145 -169762409 - AluSq SINE Alu -14 299 1 3130 194 79 36 chr6 19517145 19517477 -169762077 - L1MB5 LINE L1 -776 5395 4929 2055 108 35 7 chr6 19517528 19517816 -169761738 - AluSx SINE Alu -11 301 6 1316 153 47 0 chr6 19517819 19518055 -169761499 - L1MD3 LINE L1 -20 7975 7729 1888 160 3 3 chr6 19518106 19518399 -169761155 - AluJb SINE Alu -19 293 1 2579 65 0 0 chr6 19518432 19518739 -169760815 - AluY SINE Alu -4 307 1 264 278 126 84 chr6 19519195 19519576 -169759978 - MLT1L LTR MaLR -2 613 217 396 117 0 0 chr6 19519976 19520036 -169759518 - L1MB7 LINE L1 -19 6165 6106 1119 115 148 60 chr6 19520042 19520259 -169759295 + MER46A DNA MER2_type 1 236 0 22 70 0 0 chr6 19520321 19520364 -169759190 + AT_rich Low_complexity Low_complexity 1 43 0 1950 200 108 47 chr6 19520377 19520427 -169759127 - L1M4 LINE L1 -495 5683 5637 2420 97 0 0 chr6 19520427 19520726 -169758828 + AluSq SINE Alu 1 299 -14 1950 200 108 47 chr6 19520726 19521401 -169758153 - L1M4 LINE L1 -541 5637 5004 216 0 0 0 chr6 19521401 19521425 -169758129 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 2325 75 0 0 chr6 19521425 19521703 -169757851 - AluSg SINE Alu -32 278 1 1950 200 108 47 chr6 19521703 19522028 -169757526 - L1M4 LINE L1 -1173 5005 4530 227 211 0 0 chr6 19522028 19522066 -169757488 + MER58A DNA MER1_type 2 39 -185 10727 164 23 17 chr6 19522089 19525158 -169754396 - L1PB1 LINE L1 0 6151 3069 225 0 0 0 chr6 19525165 19525190 -169754364 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 869 136 0 0 chr6 19525202 19525327 -169754227 - FLAM_C SINE Alu -17 126 2 265 143 20 20 chr6 19525331 19525380 -169754174 + MER58A DNA MER1_type 44 92 -15 661 150 231 7 chr6 19525395 19525542 -169754012 + MER58A DNA MER1_type 44 223 -1 2687 272 66 40 chr6 19525543 19525709 -169753845 - L1M4 LINE L1 -1612 4534 4374 2238 98 3 10 chr6 19525709 19526005 -169753549 - AluSx SINE Alu -18 294 1 2223 112 7 3 chr6 19526007 19526310 -169753244 - AluSg SINE Alu -6 304 1 2687 272 66 40 chr6 19526310 19527369 -169752185 - L1M4 LINE L1 -1772 4374 3274 1146 194 0 42 chr6 19527471 19527708 -169751846 - AluJo SINE Alu 0 312 86 2124 129 0 0 chr6 19528190 19528485 -169751069 - AluSx SINE Alu -17 295 1 1030 253 96 73 chr6 19528717 19529106 -169750448 - HAL1b LINE L1 -3 1345 966 1759 148 69 0 chr6 19529106 19529383 -169750171 + AluJo SINE Alu 5 300 -12 1030 253 96 73 chr6 19529383 19529756 -169749798 - HAL1b LINE L1 -382 966 566 26 0 0 0 chr6 19529935 19529961 -169749593 + AT_rich Low_complexity Low_complexity 1 26 0 533 288 62 65 chr6 19530057 19530152 -169749402 - L1MC4a LINE L1 -1900 5908 5814 1688 154 44 17 chr6 19530152 19530450 -169749104 - AluJo SINE Alu -6 306 1 533 288 62 65 chr6 19530450 19530660 -169748894 - L1MC4a LINE L1 -1994 5814 5604 2311 93 30 3 chr6 19530878 19531179 -169748375 - AluSq SINE Alu -4 309 1 568 274 72 48 chr6 19531251 19531583 -169747971 - L1ME3A LINE L1 -218 5952 5613 1510 213 75 65 chr6 19531606 19531815 -169747739 - L1ME3A LINE L1 -5 6165 5960 180 0 0 0 chr6 19531815 19531835 -169747719 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1510 213 75 65 chr6 19531835 19531890 -169747664 - L1ME3A LINE L1 -210 5960 5907 2408 92 0 0 chr6 19531890 19532194 -169747360 - AluSx SINE Alu -8 304 1 1510 213 75 65 chr6 19532194 19532350 -169747204 - L1ME3A LINE L1 -263 5907 5754 1849 157 43 0 chr6 19532350 19532649 -169746905 - AluJo SINE Alu 0 312 1 1510 213 75 65 chr6 19532649 19532812 -169746742 - L1ME3A LINE L1 -416 5754 5574 2014 123 0 63 chr6 19532924 19533241 -169746313 - AluSx SINE Alu -15 297 1 2563 111 24 8 chr6 19534200 19534569 -169744985 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr6 19534593 19534620 -169744934 + (CA)n Simple_repeat Simple_repeat 2 28 0 910 123 0 0 chr6 19535722 19535852 -169743702 + FLAM_C SINE Alu 1 130 -3 21 0 0 0 chr6 19535855 19535876 -169743678 + AT_rich Low_complexity Low_complexity 1 21 0 1090 171 0 0 chr6 19536224 19536400 -169743154 - AluSg/x SINE Alu -3 309 134 2368 106 0 0 chr6 19536400 19536703 -169742851 - AluSx SINE Alu -9 303 1 727 236 185 35 chr6 19536912 19537280 -169742274 + L1ME4a LINE L1 5476 5898 -223 2118 113 3 23 chr6 19537483 19537783 -169741771 + AluSg SINE Alu 1 294 -16 842 152 17 73 chr6 19537805 19537930 -169741624 + L1MB2 LINE L1 6002 6132 -39 2431 59 0 33 chr6 19537930 19538235 -169741319 + AluY SINE Alu 1 295 -16 2010 149 3 0 chr6 19538238 19538533 -169741021 + AluSx SINE Alu 1 296 -16 842 152 17 73 chr6 19538533 19538581 -169740973 + L1MB2 LINE L1 6134 6169 -2 1006 165 85 0 chr6 19539094 19539294 -169740260 - MER20 DNA MER1_type 0 219 3 1955 160 0 10 chr6 19539596 19539889 -169739665 + AluJb SINE Alu 1 290 -22 849 132 0 0 chr6 19540250 19540371 -169739183 + FLAM_A SINE Alu 8 128 -14 2305 101 0 7 chr6 19540530 19540838 -169738716 + AluSq SINE Alu 1 306 -7 1868 169 16 10 chr6 19540914 19541221 -169738333 - AluJo SINE Alu -3 309 1 2321 93 0 10 chr6 19541496 19541796 -169737758 - AluSq SINE Alu -16 297 1 1006 29 7 79 chr6 19541797 19541936 -169737618 - AluSq/x SINE Alu -177 135 7 2897 158 42 52 chr6 19542227 19542283 -169737271 - L1MB5 LINE L1 0 6174 6119 808 129 0 58 chr6 19542283 19542422 -169737132 - FLAM_C SINE Alu -2 131 1 2897 158 42 52 chr6 19542422 19542961 -169736593 - L1MB5 LINE L1 -55 6119 5585 4780 122 38 44 chr6 19542992 19543071 -169736483 - L1MA8 LINE L1 -5 6286 6208 2378 97 3 3 chr6 19543071 19543379 -169736175 + AluSx SINE Alu 1 308 -4 4780 122 38 44 chr6 19543379 19544211 -169735343 - L1MA8 LINE L1 -83 6208 5380 1634 174 88 9 chr6 19544214 19544531 -169735023 - MER2 DNA MER2_type -3 342 1 433 206 88 0 chr6 19544531 19544633 -169734921 - L1MA8 LINE L1 -919 5381 5271 1875 121 110 0 chr6 19545542 19545815 -169733739 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 19545961 19545990 -169733564 + AT_rich Low_complexity Low_complexity 1 29 0 1007 135 0 0 chr6 19546007 19546148 -169733406 - AluSq/x SINE Alu -172 141 1 756 53 0 0 chr6 19546187 19546282 -169733272 + AluY SINE Alu 212 306 -5 1600 153 0 93 chr6 19546505 19546826 -169732728 + AluJb SINE Alu 1 291 -21 28 0 0 0 chr6 19547319 19547347 -169732207 + AT_rich Low_complexity Low_complexity 1 28 0 1942 149 17 0 chr6 19547504 19547793 -169731761 - AluSx SINE Alu -18 294 1 628 137 29 127 chr6 19548454 19548659 -169730895 + MER53 DNA DNA 1 185 -4 1602 157 28 25 chr6 19549743 19550029 -169729525 + AluJo SINE Alu 6 292 -20 967 161 37 0 chr6 19550756 19550917 -169728637 + FRAM SINE Alu 1 167 -9 2253 114 3 0 chr6 19551191 19551490 -169728064 + AluSx SINE Alu 2 301 -11 1749 150 39 0 chr6 19551835 19552115 -169727439 + AluJb SINE Alu 14 304 -8 366 0 0 0 chr6 19552916 19552960 -169726594 + L1PA3 LINE L1 6109 6152 -3 2092 70 4 4 chr6 19553331 19553588 -169725966 + AluSc SINE Alu 1 257 -52 23 0 0 0 chr6 19553594 19553617 -169725937 + AT_rich Low_complexity Low_complexity 1 23 0 1804 167 0 3 chr6 19553853 19554135 -169725419 + AluJo SINE Alu 1 281 -31 952 130 0 0 chr6 19554211 19554342 -169725212 - FLAM_C SINE Alu -10 133 3 252 86 0 0 chr6 19556213 19556248 -169723306 + (TA)n Simple_repeat Simple_repeat 1 35 0 2498 62 0 31 chr6 19556252 19556573 -169722981 - AluY SINE Alu 0 311 1 373 216 45 11 chr6 19556581 19556669 -169722885 - MER103 DNA DNA -73 93 3 1101 141 0 12 chr6 19557223 19557393 -169722161 - FRAM SINE Alu -10 166 1 327 122 0 0 chr6 19557399 19557448 -169722106 + MER5B DNA MER1_type 126 174 -4 1842 155 9 29 chr6 19557962 19558278 -169721276 - AluJo SINE Alu 0 312 3 1827 146 0 7 chr6 19558339 19558619 -169720935 + AluJo SINE Alu 5 282 -30 2373 83 10 0 chr6 19559564 19559864 -169719690 - AluSx SINE Alu -9 303 1 294 146 0 0 chr6 19559959 19560007 -169719547 - MER91A DNA MER1_type -147 49 2 2251 114 3 9 chr6 19560774 19561089 -169718465 + AluSq SINE Alu 1 313 0 2455 92 0 9 chr6 19562247 19562562 -169716992 + AluSx SINE Alu 1 312 0 2242 167 8 0 chr6 19562908 19563292 -169716262 - MLT1B LTR MaLR -3 387 1 2194 91 0 4 chr6 19563685 19563991 -169715563 - AluSx SINE Alu 0 314 10 752 222 296 0 chr6 19564166 19564369 -169715185 + Tigger7 DNA MER2_type 1 263 -2224 * 1192 136 79 0 chr6 19564366 19564580 -169714974 + Tigger7 DNA MER2_type 2261 2491 0 2419 69 3 16 chr6 19564995 19565301 -169714253 - AluY SINE Alu -9 302 1 668 269 133 70 chr6 19565553 19565740 -169713814 - HAL1 LINE L1 -6 2501 2327 1927 156 3 10 chr6 19565740 19566042 -169713512 - AluJo SINE Alu -12 300 1 668 269 133 70 chr6 19566042 19566512 -169713042 - HAL1 LINE L1 -180 2327 1791 2504 68 0 10 chr6 19566512 19566821 -169712733 - AluY SINE Alu -5 306 1 668 269 133 70 chr6 19566821 19566894 -169712660 - HAL1 LINE L1 -716 1791 1724 329 235 184 14 chr6 19566968 19567185 -169712369 - HAL1 LINE L1 -1244 1263 1010 261 308 62 8 chr6 19567610 19567740 -169711814 - HAL1 LINE L1 -2134 373 237 2151 100 28 0 chr6 19567891 19568182 -169711372 + AluSx SINE Alu 1 299 -13 1646 112 115 15 chr6 19568390 19568659 -169710895 - AluSx SINE Alu -11 301 6 22 0 0 0 chr6 19570953 19570975 -169708579 + GC_rich Low_complexity Low_complexity 1 22 0 1616 184 0 4 chr6 19574116 19574385 -169705169 + AluJb SINE Alu 1 268 -44 7170 77 43 2 chr6 19574385 19575316 -169704238 + LTR5 LTR ERVK 1 969 0 920 196 26 78 chr6 19575734 19575964 -169703590 - MER58A DNA MER1_type -3 221 4 40211 57 36 2 chr6 19576009 19581899 -169697655 + L1PA5 LINE L1 3 6100 -54 204 40 0 0 chr6 19581899 19581924 -169697630 + (TA)n Simple_repeat Simple_repeat 1 25 0 40211 57 36 2 chr6 19581924 19581981 -169697573 + L1PA5 LINE L1 6100 6154 0 206 282 20 128 chr6 19583071 19583266 -169696288 + L2 LINE L2 3031 3204 -68 876 145 30 0 chr6 19583277 19583408 -169696146 - AluJo SINE Alu -177 135 1 221 308 62 0 chr6 19583410 19583475 -169696079 + L2 LINE L2 3244 3312 -1 368 246 109 0 chr6 19583874 19583984 -169695570 + L2 LINE L2 3192 3313 0 22 0 0 0 chr6 19584227 19584249 -169695305 + AT_rich Low_complexity Low_complexity 1 22 0 789 153 15 8 chr6 19584424 19584555 -169694999 + Tigger4(Zombi) DNA MER2_type 1 132 -2599 495 250 9 9 chr6 19584565 19584677 -169694877 + FRAM SINE Alu 1 112 -64 848 103 146 65 chr6 19584690 19584875 -169694679 + Tigger4(Zombi) DNA MER2_type 2532 2731 0 2322 94 0 7 chr6 19585480 19585788 -169693766 - AluSx SINE Alu -6 306 1 349 256 12 0 chr6 19585795 19585877 -169693677 + L2 LINE L2 3229 3311 -2 335 255 151 9 chr6 19585873 19585979 -169693575 - MIR SINE MIR -130 132 12 * 2037 120 41 0 chr6 19586036 19586327 -169693227 + AluSc SINE Alu 1 303 -6 2249 87 3 20 chr6 19586544 19586843 -169692711 - AluSp SINE Alu -19 294 1 669 161 113 40 chr6 19586964 19587088 -169692466 - FLAM_A SINE Alu 0 133 1 452 294 234 19 chr6 19587988 19588202 -169691352 + MIR SINE MIR 3 262 0 795 180 0 0 chr6 19588294 19588416 -169691138 + FLAM_C SINE Alu 2 123 -10 805 254 93 10 chr6 19589292 19589485 -169690069 - MER58C DNA MER1_type -5 210 2 1427 148 121 0 chr6 19589733 19589997 -169689557 + AluSg SINE Alu 1 296 -14 4436 168 25 18 chr6 19590002 19590730 -169688824 + MER44D DNA MER2_type 1 605 0 782 174 223 38 chr6 19591414 19591598 -169687956 + AluJo SINE Alu 70 287 -25 467 320 67 67 chr6 19592680 19593024 -169686530 + MLT1J LTR MaLR 105 448 -63 2493 117 40 6 chr6 19593391 19593743 -169685811 + THE1B LTR MaLR 1 364 0 189 250 125 14 chr6 19594386 19594458 -169685096 - MIR3 SINE MIR -44 164 85 2221 96 7 3 chr6 19595298 19595591 -169683963 - AluSx SINE Alu -18 294 1 634 224 154 33 chr6 19595683 19595897 -169683657 - MIR SINE MIR 0 262 23 361 90 34 18 chr6 19596384 19596486 -169683068 + MER20 DNA MER1_type 31 195 -24 2292 60 0 0 chr6 19597836 19598118 -169681436 + AluY SINE Alu 30 311 0 244 95 0 0 chr6 19598196 19598238 -169681316 - AluSx SINE Alu 0 308 267 1327 110 6 0 chr6 19598241 19598414 -169681140 - AluSx SINE Alu -138 174 1 1788 206 3 0 chr6 19599847 19600158 -169679396 + AluJb SINE Alu 1 312 0 4127 169 134 108 chr6 19600260 19601351 -169678203 + Charlie1a DNA MER1_type 5 1067 -1694 1377 196 55 0 chr6 19601351 19601622 -169677932 - AluJo SINE Alu -26 286 1 4127 169 134 108 chr6 19601622 19601668 -169677886 + Charlie1a DNA MER1_type 1067 1110 -1651 2134 117 0 7 chr6 19601668 19601995 -169677559 + AluSx SINE Alu 1 312 0 4127 169 134 108 chr6 19601995 19602271 -169677283 + Charlie1a DNA MER1_type 1110 1455 0 2438 70 10 0 chr6 19603606 19603906 -169675648 - AluSp SINE Alu -10 303 1 1943 149 6 19 chr6 19605049 19605365 -169674189 + AluJb SINE Alu 1 312 0 303 333 30 15 chr6 19605373 19605505 -169674049 + MIR3 SINE MIR 36 169 -39 794 62 0 0 chr6 19606673 19606769 -169672785 + AluY SINE Alu 6 101 -210 243 0 0 0 chr6 19606769 19606796 -169672758 + Alu SINE Alu 70 96 -212 1968 69 0 4 chr6 19606799 19607044 -169672510 + AluY SINE Alu 68 311 0 198 288 24 56 chr6 19607540 19607665 -169671889 + L2 LINE L2 2159 2279 -1035 1939 131 66 19 chr6 19607676 19607996 -169671558 + MER2 DNA MER2_type 9 343 -2 350 312 55 15 chr6 19607997 19608199 -169671355 + L2 LINE L2 2281 2490 -824 2728 134 140 110 chr6 19608251 19608338 -169671216 + MSTB-int LTR MaLR 942 1025 -626 1745 163 54 0 chr6 19608338 19608632 -169670922 + AluJb SINE Alu 1 310 -2 2728 134 140 110 chr6 19608632 19608910 -169670644 + MSTB-int LTR MaLR 1025 1293 -358 2134 122 7 0 chr6 19608910 19609213 -169670341 + AluSp SINE Alu 1 305 -8 2728 134 140 110 chr6 19609213 19609530 -169670024 + MSTB-int LTR MaLR 1293 1646 -5 2179 150 85 13 chr6 19609535 19609938 -169669616 + MSTB LTR MaLR 1 364 0 23 0 0 0 chr6 19610375 19610398 -169669156 + AT_rich Low_complexity Low_complexity 1 23 0 282 132 0 0 chr6 19611467 19611520 -169668034 + (TCC)n Simple_repeat Simple_repeat 2 54 0 334 266 100 123 chr6 19611573 19611994 -169667560 + L1M2 LINE L1 594 1004 -5845 28 29 0 0 chr6 19612220 19612255 -169667299 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 19612514 19612545 -169667009 + GC_rich Low_complexity Low_complexity 1 31 0 182 326 39 23 chr6 19613097 19613226 -169666328 + L2 LINE L2 2433 2563 -751 4410 167 140 87 chr6 19613244 19614118 -169665436 - MER52A LTR ERV1 -456 1299 251 699 97 0 0 chr6 19614118 19614211 -169665343 - AluSg/x SINE Alu -4 308 216 4410 167 140 87 chr6 19614211 19614477 -169665077 - MER52A LTR ERV1 -1504 251 1 2358 235 86 46 chr6 19614692 19615560 -169663994 - L2 LINE L2 -816 2498 1596 1053 266 96 29 chr6 19615579 19615996 -169663558 - LTR16A LTR ERVL -5 445 1 1854 290 37 24 chr6 19615998 19616619 -169662935 - L2 LINE L2 -1732 1582 954 683 230 146 11 chr6 19616628 19616806 -169662748 + L2 LINE L2 3112 3313 0 351 333 35 0 chr6 19617416 19617530 -169662024 + L2 LINE L2 3191 3308 -5 2347 103 0 0 chr6 19617598 19617900 -169661654 + AluSp SINE Alu 1 302 -11 2259 107 7 3 chr6 19618650 19618959 -169660595 - AluSx SINE Alu -2 310 1 816 151 123 0 chr6 19619209 19619355 -169660199 + MER20 DNA MER1_type 1 164 -55 505 48 0 0 chr6 19619357 19619420 -169660134 - FLAM_A SINE Alu -8 134 72 1040 83 0 0 chr6 19619359 19619491 -169660063 - AluJo/FLAM SINE Alu -169 133 2 2149 161 59 11 chr6 19619962 19620334 -169659220 + MLT2B1 LTR ERVL 1 390 -130 223 274 0 0 chr6 19620334 19620396 -169659158 + A-rich Low_complexity Low_complexity 1 62 0 680 129 0 0 chr6 19620785 19620886 -169658668 - HY3 scRNA scRNA 0 101 1 2129 114 44 0 chr6 19620966 19621263 -169658291 + AluSx SINE Alu 1 310 -2 1830 171 3 0 chr6 19621642 19621928 -169657626 - AluJb SINE Alu -25 287 1 1569 154 8 19 chr6 19622119 19622386 -169657168 - AluJo SINE Alu -12 300 37 40 0 0 0 chr6 19622434 19622474 -169657080 + AT_rich Low_complexity Low_complexity 1 40 0 2185 143 24 8 chr6 19622474 19622851 -169656703 - L1PB3 LINE L1 -7 6147 5765 193 286 48 12 chr6 19622872 19622956 -169656598 + L2 LINE L2 2791 2877 -437 188 298 18 0 chr6 19623205 19623262 -169656292 + L2 LINE L2 3202 3259 -54 1980 146 10 0 chr6 19623330 19623624 -169655930 + AluJb SINE Alu 1 297 -15 38 85 0 0 chr6 19624105 19624199 -169655355 + AT_rich Low_complexity Low_complexity 1 94 0 183 184 0 0 chr6 19625844 19625882 -169653672 + (TG)n Simple_repeat Simple_repeat 2 39 0 2350 86 0 10 chr6 19626117 19626421 -169653133 - AluSx SINE Alu -6 306 6 250 303 0 26 chr6 19628152 19628228 -169651326 - MIR3 SINE MIR -5 203 130 667 161 17 0 chr6 19628421 19628539 -169651015 + FLAM_C SINE Alu 2 121 -22 32 0 0 0 chr6 19628539 19628571 -169650983 + AT_rich Low_complexity Low_complexity 1 32 0 1377 150 0 13 chr6 19628874 19629101 -169650453 - AluJb SINE Alu 0 312 89 592 172 0 0 chr6 19629143 19629236 -169650318 - AluJb SINE Alu -218 94 2 537 158 8 16 chr6 19629296 19629423 -169650131 + CT-rich Low_complexity Low_complexity 1 126 0 989 182 0 11 chr6 19629435 19629611 -169649943 - FRAM SINE Alu -2 174 1 209 256 141 0 chr6 19629826 19629904 -169649650 - MIR SINE MIR -92 170 82 2193 105 20 3 chr6 19629991 19630286 -169649268 + AluSc SINE Alu 1 300 -9 297 227 102 11 chr6 19630328 19630416 -169649138 + L2 LINE L2 3210 3305 -8 392 279 122 27 chr6 19630587 19630734 -169648820 + L2 LINE L2 3111 3271 -1 2125 130 3 0 chr6 19630876 19631168 -169648386 - AluSx SINE Alu -13 299 7 267 224 0 40 chr6 19631222 19631298 -169648256 + MER20B DNA MER1_type 540 612 -171 598 208 66 20 chr6 19631304 19631501 -169648053 + MER20B DNA MER1_type 578 783 0 315 0 0 0 chr6 19631584 19631619 -169647935 + (TA)n Simple_repeat Simple_repeat 2 36 0 2117 99 27 7 chr6 19631619 19631913 -169647641 - AluSq SINE Alu -1 312 13 751 151 0 24 chr6 19632374 19632490 -169647064 + FLAM_C SINE Alu 2 116 -186 402 21 0 0 chr6 19632490 19632537 -169647017 + (CA)n Simple_repeat Simple_repeat 1 47 0 2234 118 3 0 chr6 19632627 19632923 -169646631 + AluSg SINE Alu 1 297 -13 25 51 0 0 chr6 19633017 19633056 -169646498 + AT_rich Low_complexity Low_complexity 1 39 0 1561 156 0 101 chr6 19633064 19633209 -169646345 + AluJb SINE Alu 1 159 -143 1763 136 0 54 chr6 19633209 19633488 -169646066 + AluSx SINE Alu 4 267 -45 1561 156 0 101 chr6 19633488 19633511 -169646043 + AluJb SINE Alu 159 183 -119 236 30 30 0 chr6 19633511 19633544 -169646010 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1561 156 0 101 chr6 19633544 19633700 -169645854 + AluJb SINE Alu 183 293 -9 313 288 33 49 chr6 19633759 19634002 -169645552 - L1ME4a LINE L1 -44 6077 5839 206 278 0 0 chr6 19634116 19634170 -169645384 + (TG)n Simple_repeat Simple_repeat 1 54 0 303 93 0 0 chr6 19634170 19634213 -169645341 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr6 19634348 19634383 -169645171 + AT_rich Low_complexity Low_complexity 1 35 0 1567 78 11 117 chr6 19634454 19634735 -169644819 - L1MA5A LINE L1 -10 6287 6037 457 167 0 0 chr6 19634739 19634811 -169644743 + AluS SINE Alu 225 296 -16 262 327 85 28 chr6 19635266 19635584 -169643970 - L2 LINE L2 -1190 2124 1789 2637 43 0 3 chr6 19635724 19636026 -169643528 + AluY SINE Alu 1 301 -10 2008 145 0 0 chr6 19636093 19636403 -169643151 + AluJb SINE Alu 1 310 0 224 349 76 0 chr6 19636541 19636673 -169642881 + L2 LINE L2 1562 1703 -1611 2118 107 21 0 chr6 19636683 19636973 -169642581 + AluSg SINE Alu 1 296 -14 188 333 25 43 chr6 19636975 19637137 -169642417 - L2 LINE L2 -705 2609 2451 194 79 0 53 chr6 19637426 19637464 -169642090 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2315 64 3 7 chr6 19638249 19638559 -169640995 - AluSg1 SINE Alu 0 309 1 418 155 0 0 chr6 19638960 19639031 -169640523 + AluJ/FLAM SINE Alu 1 71 -241 469 179 0 0 chr6 19639034 19639112 -169640442 - AluJ/FLAM SINE Alu -233 79 2 235 85 0 85 chr6 19639113 19639160 -169640394 - MLT2B2 LTR ERVL -372 143 101 2252 108 14 0 chr6 19639169 19639464 -169640090 - AluSx SINE Alu -13 299 1 683 135 45 0 chr6 19639464 19639575 -169639979 - MLT2B2 LTR ERVL -399 116 1 2294 109 6 6 chr6 19639794 19640106 -169639448 - AluSq SINE Alu -1 312 1 240 35 0 0 chr6 19640106 19640135 -169639419 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1638 162 52 4 chr6 19640135 19640407 -169639147 - AluJo SINE Alu -27 285 1 31 0 0 0 chr6 19640418 19640449 -169639105 + AT_rich Low_complexity Low_complexity 1 31 0 1878 172 0 0 chr6 19640449 19640740 -169638814 - AluJb SINE Alu -21 291 1 2284 86 16 0 chr6 19641500 19641678 -169637876 - AluY SINE Alu -2 309 122 210 37 0 0 chr6 19641678 19641705 -169637849 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2284 86 16 0 chr6 19641705 19641830 -169637724 - AluY SINE Alu -189 122 1 521 229 145 50 chr6 19641865 19642126 -169637428 + MLT1E LTR MaLR 2 391 -263 255 248 60 34 chr6 19642251 19642368 -169637186 - L1MEd LINE L1 -5016 1103 984 302 295 73 109 chr6 19642440 19642769 -169636785 - MLT1I LTR MaLR -80 329 13 1876 132 33 0 chr6 19643006 19643304 -169636250 - AluSq SINE Alu 0 307 1 1596 168 0 83 chr6 19643310 19643637 -169635917 - AluJb SINE Alu -8 304 5 243 190 63 25 chr6 19644033 19644112 -169635442 - L1MC4 LINE L1 -1337 6705 6624 744 168 0 8 chr6 19644129 19644254 -169635300 - FLAM_C SINE Alu -9 124 1 2470 74 0 0 chr6 19644451 19644749 -169634805 + AluSx SINE Alu 1 298 -14 1846 143 17 34 chr6 19644761 19645055 -169634499 + AluSx SINE Alu 1 289 -23 284 264 18 106 chr6 19645156 19645278 -169634276 - L1M4 LINE L1 -1501 4645 4559 1474 173 60 0 chr6 19645278 19645562 -169633992 + AluJb SINE Alu 22 320 0 284 264 18 106 chr6 19645562 19645722 -169633832 - L1M4 LINE L1 -1587 4559 4387 2398 104 0 0 chr6 19646066 19646373 -169633181 + AluSx SINE Alu 1 307 -5 2294 81 0 7 chr6 19646845 19647154 -169632400 - AluY SINE Alu 0 307 1 2265 91 11 0 chr6 19647721 19648007 -169631547 - AluSp SINE Alu -24 289 1 1409 185 56 4 chr6 19648417 19648687 -169630867 - AluJo SINE Alu -28 284 1 2253 110 0 0 chr6 19649339 19649629 -169629925 - AluSg SINE Alu -20 290 1 2280 92 7 3 chr6 19649629 19649923 -169629631 - AluSx SINE Alu -17 295 1 341 221 164 29 chr6 19650034 19650138 -169629416 - MIR3 SINE MIR -26 182 65 627 125 19 19 chr6 19650323 19650427 -169629127 - AluJo SINE Alu -10 302 199 886 163 7 7 chr6 19650427 19650574 -169628980 - AluJo SINE Alu -165 147 1 677 122 0 0 chr6 19650687 19650794 -169628760 - L1MA8 LINE L1 -3 6288 6182 410 263 51 0 chr6 19650834 19650952 -169628602 + MLT1I LTR MaLR 258 381 -28 305 305 156 26 chr6 19651255 19651409 -169628145 + MIR3 SINE MIR 32 205 -3 2172 107 7 3 chr6 19651629 19651918 -169627636 + AluSc SINE Alu 3 292 -17 2004 155 0 3 chr6 19652361 19652657 -169626897 - AluJb SINE Alu -17 295 1 2478 68 0 0 chr6 19653266 19653562 -169625992 - AluY SINE Alu -15 296 1 1987 113 41 17 chr6 19653629 19653922 -169625632 - AluSq SINE Alu -4 309 10 1803 156 0 43 chr6 19653998 19654300 -169625254 - AluJo SINE Alu -23 289 1 1659 129 0 0 chr6 19654527 19654775 -169624779 - L1PB1 LINE L1 -4 6147 5900 844 77 0 0 chr6 19654775 19654879 -169624675 - U6 snRNA snRNA -2 105 2 2277 110 3 3 chr6 19655524 19655833 -169623721 - AluSc SINE Alu 0 309 1 756 176 11 6 chr6 19656525 19656701 -169622853 + CT-rich Low_complexity Low_complexity 4 180 0 264 149 0 0 chr6 19656724 19656771 -169622783 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 444 239 42 21 chr6 19656794 19656936 -169622618 - AluJb SINE Alu -8 304 160 817 115 0 68 chr6 19657079 19657271 -169622283 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1627 193 24 10 chr6 19657298 19657594 -169621960 - AluJb SINE Alu -10 302 3 2412 109 35 11 chr6 19657707 19658083 -169621471 + L1MA5 LINE L1 5659 6043 -257 845 163 0 7 chr6 19658086 19658221 -169621333 + AluJb SINE Alu 1 134 -178 3448 108 10 29 chr6 19658228 19658748 -169620806 - MER9 LTR ERVK 0 511 2 1035 75 38 113 chr6 19658759 19658867 -169620687 + L1MA5 LINE L1 6028 6114 -186 2147 147 0 3 chr6 19658867 19659180 -169620374 + AluSx SINE Alu 1 312 0 1035 75 38 113 chr6 19659180 19659283 -169620271 + L1MA5 LINE L1 6114 6223 -77 23 68 0 0 chr6 19659283 19659327 -169620227 + AT_rich Low_complexity Low_complexity 1 44 0 270 153 68 0 chr6 19659349 19659408 -169620146 + L1MA5A LINE L1 6235 6297 0 2577 74 0 0 chr6 19659758 19660068 -169619486 + AluY SINE Alu 1 310 -1 266 365 22 17 chr6 19660128 19660309 -169619245 + MIR3 SINE MIR 24 205 -3 327 325 34 39 chr6 19660739 19660945 -169618609 + L2 LINE L2 2682 2886 -428 2294 110 0 0 chr6 19661150 19661441 -169618113 - AluSg SINE Alu -17 293 3 2325 110 0 0 chr6 19661641 19661942 -169617612 - AluSg SINE Alu -3 307 7 2222 91 3 17 chr6 19661952 19662248 -169617306 - AluSq SINE Alu -20 293 2 2058 122 37 0 chr6 19663248 19663542 -169616012 - AluSx SINE Alu -7 305 1 32 26 0 0 chr6 19663573 19663612 -169615942 + AT_rich Low_complexity Low_complexity 1 39 0 422 261 58 27 chr6 19663791 19663995 -169615559 + LTR16C LTR ERVL 1 277 -214 329 245 170 0 chr6 19664033 19664139 -169615415 + LTR16C LTR ERVL 337 460 -31 1259 115 5 35 chr6 19664216 19664416 -169615138 - L1PB2 LINE L1 -1 6150 5957 2034 151 0 0 chr6 19664425 19664729 -169614825 - AluSx SINE Alu -8 304 1 2113 114 11 0 chr6 19664975 19665256 -169614298 + AluJo SINE Alu 10 293 -19 2128 108 21 3 chr6 19665256 19665542 -169614012 + AluSc SINE Alu 1 291 -18 2718 139 83 28 chr6 19665909 19666457 -169613097 - LTR24B LTR ERV1 -6 570 1 2345 71 3 20 chr6 19666560 19666877 -169612677 - AluY SINE Alu 0 311 1 225 274 179 0 chr6 19667036 19667142 -169612412 + MIR SINE MIR 132 256 -6 2138 138 0 0 chr6 19667143 19667447 -169612107 - AluSx SINE Alu -4 308 5 22 94 0 0 chr6 19667515 19667579 -169611975 + AT_rich Low_complexity Low_complexity 1 64 0 2319 87 0 16 chr6 19667659 19667971 -169611583 - AluSp SINE Alu -4 309 3 2343 86 3 0 chr6 19668118 19668410 -169611144 - AluSp SINE Alu -20 293 1 2081 162 0 0 chr6 19668475 19668778 -169610776 - AluSx SINE Alu -9 303 1 1588 238 123 23 chr6 19668878 19669445 -169610109 + MER114 LTR ERV 25 648 0 2504 51 10 3 chr6 19669815 19670111 -169609443 - AluY SINE Alu -13 298 1 2159 99 0 18 chr6 19670148 19670430 -169609124 - AluSg SINE Alu -31 279 3 1686 179 0 45 chr6 19670912 19671224 -169608330 - AluJo SINE Alu -14 298 1 2169 105 0 26 chr6 19671258 19671563 -169607991 + AluSx SINE Alu 14 310 -2 713 198 9 0 chr6 19671760 19671876 -169607678 - FLAM_C SINE Alu -25 118 2 420 285 44 25 chr6 19672998 19673156 -169606398 - MIR SINE MIR -18 244 84 1642 135 128 6 chr6 19673854 19673954 -169605600 - L1MB3 LINE L1 -1 6182 6096 1867 166 10 3 chr6 19673954 19674250 -169605304 - AluJo SINE Alu -14 298 1 1642 135 128 6 chr6 19674250 19674468 -169605086 - L1MB3 LINE L1 -87 6096 5825 2539 59 0 0 chr6 19674983 19675286 -169604268 - AluY SINE Alu -8 303 1 3659 183 43 3 chr6 19675294 19675766 -169603788 + MER54B LTR ERVL 1 509 -284 769 84 17 0 chr6 19675766 19675885 -169603669 + (GA)n Simple_repeat Simple_repeat 1 121 0 3659 183 43 3 chr6 19675885 19676078 -169603476 + MER54B LTR ERVL 509 693 -100 1297 170 4 18 chr6 19677427 19677656 -169601898 - AluJb SINE Alu -86 226 1 1330 115 161 14 chr6 19677678 19677896 -169601658 + AluSg1 SINE Alu 49 298 -11 217 250 73 0 chr6 19677927 19677995 -169601559 + L3 LINE CR1 1380 1452 -125 22 0 0 0 chr6 19678141 19678163 -169601391 + AT_rich Low_complexity Low_complexity 1 22 0 883 90 0 0 chr6 19679018 19679129 -169600425 + AluSp/q SINE Alu 186 296 -17 4346 126 47 11 chr6 19679467 19679593 -169599961 + L1PB3 LINE L1 5462 5582 -572 2581 59 0 0 chr6 19679593 19679896 -169599658 - AluY SINE Alu -8 303 1 4346 126 47 11 chr6 19679896 19680099 -169599455 + L1PB3 LINE L1 5582 5776 -378 396 0 0 0 chr6 19680099 19680143 -169599411 + (CA)n Simple_repeat Simple_repeat 2 45 0 4346 126 47 11 chr6 19680143 19680479 -169599075 + L1PB3 LINE L1 5776 6152 -2 190 224 271 12 chr6 19680520 19680605 -169598949 + MIR SINE MIR 55 161 -101 207 336 108 35 chr6 19680836 19681095 -169598459 + L2 LINE L2 2958 3235 -37 1845 151 7 30 chr6 19681534 19681838 -169597716 + AluJo SINE Alu 1 297 -15 349 250 61 15 chr6 19681937 19682069 -169597485 + MER97b DNA MER1_type? 916 1053 0 1717 163 10 23 chr6 19682688 19682989 -169596565 + AluJo SINE Alu 5 301 -11 296 277 125 9 chr6 19683626 19683738 -169595816 + MIR SINE MIR 50 174 -88 2320 102 0 16 chr6 19683742 19684057 -169595497 - AluSx SINE Alu -2 310 1 218 267 133 0 chr6 19684900 19684960 -169594594 + MIR3 SINE MIR 98 165 -43 1713 104 5 0 chr6 19685284 19685504 -169594050 + AluSx SINE Alu 1 221 -91 210 37 0 0 chr6 19685520 19685547 -169594007 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1192 172 18 35 chr6 19685578 19685805 -169593749 - AluJo SINE Alu -8 304 82 195 286 0 61 chr6 19686140 19686238 -169593316 - MIR SINE MIR -66 196 105 1032 230 96 5 chr6 19686238 19686532 -169593022 - MER57A LTR ERV1 0 403 117 182 342 13 0 chr6 19686532 19686608 -169592946 - MIR SINE MIR -128 134 58 2334 113 0 0 chr6 19686641 19686951 -169592603 - AluSx SINE Alu -2 310 1 285 254 159 16 chr6 19687162 19687288 -169592266 - L2 LINE L2 -1 3312 3169 23 0 0 0 chr6 19687960 19687983 -169591571 + AT_rich Low_complexity Low_complexity 1 23 0 2033 137 27 0 chr6 19688403 19688703 -169590851 + AluSx SINE Alu 1 308 -4 1871 171 30 18 chr6 19688705 19689039 -169590515 + MLT1A1 LTR MaLR 27 364 -1 209 275 0 88 chr6 19689910 19690001 -169589553 + MIR SINE MIR 166 248 -14 387 0 0 0 chr6 19690037 19690080 -169589474 + (TG)n Simple_repeat Simple_repeat 2 44 0 573 274 20 68 chr6 19690138 19690390 -169589164 + MIR SINE MIR 6 245 -17 445 234 40 16 chr6 19690663 19690787 -169588767 + MER5A DNA MER1_type 21 147 -42 389 200 12 147 chr6 19690815 19690985 -169588569 - MER5B DNA MER1_type -30 148 2 250 299 60 19 chr6 19691010 19691186 -169588368 + MER5A DNA MER1_type 38 187 -2 2113 120 3 3 chr6 19691303 19691594 -169587960 + AluSx SINE Alu 1 291 -21 496 173 0 0 chr6 19692046 19692127 -169587427 + MER5A DNA MER1_type 10 90 -99 1542 174 44 20 chr6 19692614 19692912 -169586642 + AluJo SINE Alu 1 305 -7 686 178 31 16 chr6 19692937 19693066 -169586488 - L1MC1 LINE L1 -1 6332 6202 312 194 0 0 chr6 19693170 19693232 -169586322 - LTR5 LTR ERVK -153 816 755 1403 164 35 28 chr6 19693232 19693519 -169586035 - L1MC3 LINE L1 -202 7583 7295 729 142 0 0 chr6 19693521 19693627 -169585927 - MLT1B LTR MaLR -284 106 1 1568 149 90 28 chr6 19693699 19693988 -169585566 - AluJo SINE Alu -5 307 1 2216 116 0 0 chr6 19694794 19695097 -169584457 - AluSx SINE Alu -9 303 1 586 263 173 63 chr6 19695112 19695447 -169584107 + MLT1J LTR MaLR 1 372 -139 1695 184 3 20 chr6 19695508 19695813 -169583741 - AluJo SINE Alu -12 300 1 2469 66 3 0 chr6 19695861 19696162 -169583392 - AluY SINE Alu -9 302 1 541 219 206 20 chr6 19697767 19697913 -169581641 - MER21B LTR ERV1 -690 173 1 664 333 154 49 chr6 19698128 19698617 -169580937 + L2 LINE L2 1563 2000 -1313 1469 168 78 4 chr6 19698617 19698885 -169580669 + AluJo SINE Alu 1 288 -24 664 333 154 49 chr6 19698885 19699716 -169579838 + L2 LINE L2 2000 3030 -283 243 180 0 20 chr6 19699726 19699776 -169579778 + MER5B DNA MER1_type 1 49 -129 230 195 24 10 chr6 19699826 19699917 -169579637 - MER5A DNA MER1_type -19 170 1 392 269 0 19 chr6 19700065 19700169 -169579385 + L2 LINE L2 3212 3313 0 208 231 19 0 chr6 19700511 19700563 -169578991 + (TG)n Simple_repeat Simple_repeat 2 54 0 1424 199 14 11 chr6 19700704 19700990 -169578564 - AluJo SINE Alu -6 306 20 37549 60 3 2 chr6 19702081 19707632 -169571922 - L1PA5 LINE L1 0 6154 597 197 358 12 25 chr6 19707692 19707773 -169571781 - MIR SINE MIR -163 99 20 1007 153 0 69 chr6 19708161 19708350 -169571204 - AluJ SINE Alu -15 297 122 299 200 0 12 chr6 19708351 19708431 -169571123 + CT-rich Low_complexity Low_complexity 1 79 0 840 150 39 0 chr6 19708431 19708558 -169570996 - AluJ SINE Alu -169 133 2 1931 151 3 19 chr6 19709966 19710277 -169569277 - AluJb SINE Alu 0 312 7 1533 103 84 5 chr6 19710958 19711171 -169568383 + MER30 DNA MER1_type 1 230 0 500 220 56 13 chr6 19711201 19711359 -169568195 + MIR SINE MIR 50 215 -47 27 0 0 0 chr6 19711453 19711480 -169568074 + AT_rich Low_complexity Low_complexity 1 27 0 2515 124 28 3 chr6 19713773 19714128 -169565426 + THE1B LTR MaLR 1 364 0 308 215 161 113 chr6 19714458 19714732 -169564822 - L1M2a LINE L1 -6066 1102 816 2339 104 13 0 chr6 19715354 19715663 -169563891 - AluSp SINE Alu 0 313 1 189 171 0 0 chr6 19716982 19717017 -169562537 + (CTG)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr6 19717018 19717039 -169562515 + AT_rich Low_complexity Low_complexity 1 21 0 604 114 11 23 chr6 19717906 19717994 -169561560 - FLAM_A SINE Alu -20 122 36 34 0 0 0 chr6 19718001 19718035 -169561519 + AT_rich Low_complexity Low_complexity 1 34 0 285 286 217 43 chr6 19718079 19718383 -169561171 + L2 LINE L2 2915 3271 -1 860 170 0 15 chr6 19718877 19719012 -169560542 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 19719280 19719301 -169560253 + AT_rich Low_complexity Low_complexity 1 21 0 255 238 0 88 chr6 19719309 19719389 -169560165 + MIR SINE MIR 175 247 -15 1833 93 0 4 chr6 19719676 19719912 -169559642 + AluSq SINE Alu 1 235 -78 323 303 68 56 chr6 19720434 19720863 -169558691 + L1M4 LINE L1 2731 3164 -2982 1614 59 5 55 chr6 19720999 19721218 -169558336 + AluY SINE Alu 86 293 -18 2368 88 0 0 chr6 19721218 19721514 -169558040 + AluY SINE Alu 1 296 -15 739 218 0 0 chr6 19722588 19722721 -169556833 - FLAM_C SINE Alu 0 133 1 2075 108 0 0 chr6 19722726 19723004 -169556550 - AluSg1 SINE Alu 0 309 32 329 214 70 5 chr6 19723752 19723849 -169555705 - MER5A DNA MER1_type -15 163 53 1663 160 3 33 chr6 19723861 19724161 -169555393 + AluJb SINE Alu 1 291 -21 1212 113 15 10 chr6 19724278 19724473 -169555081 - Tigger2a DNA MER2_type -238 196 1 1290 78 48 0 chr6 19724493 19724659 -169554895 - AluSg/x SINE Alu -5 307 134 359 232 80 8 chr6 19724670 19724795 -169554759 - MER114 LTR ERV -514 134 1 1570 175 0 77 chr6 19724861 19725187 -169554367 + AluJo SINE Alu 1 301 -11 224 154 19 0 chr6 19725304 19725356 -169554198 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 252 65 0 0 chr6 19725360 19725406 -169554148 + LTR66 LTR ERVL 394 439 -171 1987 135 0 0 chr6 19725412 19725700 -169553854 - AluSx SINE Alu -20 292 5 24 53 0 0 chr6 19725709 19725747 -169553807 + AT_rich Low_complexity Low_complexity 1 38 0 1206 174 178 12 chr6 19725747 19725994 -169553560 + AluJo SINE Alu 1 288 -24 269 191 29 15 chr6 19726113 19726181 -169553373 - MER94 DNA DNA -64 70 2 289 302 53 45 chr6 19726293 19726667 -169552887 + L1M4 LINE L1 3778 4154 -1992 365 313 93 65 chr6 19727047 19727643 -169551911 + L1M4 LINE L1 4741 5358 -788 432 0 0 0 chr6 19727643 19727691 -169551863 + (TG)n Simple_repeat Simple_repeat 2 49 0 365 313 93 65 chr6 19727691 19727730 -169551824 + L1M4 LINE L1 5358 5394 -752 2388 98 3 0 chr6 19729596 19729901 -169549653 - AluSg SINE Alu -4 306 1 2131 125 7 7 chr6 19730648 19730945 -169548609 - AluSx SINE Alu -15 297 1 506 121 0 0 chr6 19730945 19731011 -169548543 - AluS SINE Alu -227 86 21 21 0 0 0 chr6 19731128 19731149 -169548405 + AT_rich Low_complexity Low_complexity 1 21 0 1600 165 27 27 chr6 19731152 19731449 -169548105 - AluJo SINE Alu -15 297 1 290 258 0 0 chr6 19731633 19731695 -169547859 - MER91 DNA MER1_type 0 140 79 429 312 62 11 chr6 19731754 19731943 -169547611 - MIR SINE MIR -32 230 35 189 274 228 35 chr6 19731967 19732164 -169547390 + L2 LINE L2 2176 2410 -904 2150 115 123 52 chr6 19732210 19732610 -169546944 + MSTA LTR MaLR 1 428 0 2310 148 63 22 chr6 19732868 19733279 -169546275 + MSTA LTR MaLR 1 428 0 259 333 116 22 chr6 19733429 19733567 -169545987 + L2 LINE L2 3118 3268 -4 239 319 76 35 chr6 19734090 19734161 -169545393 + MIR3 SINE MIR 45 112 -96 2451 91 0 3 chr6 19734161 19734469 -169545085 - AluSq SINE Alu -6 307 1 239 319 76 35 chr6 19734469 19734541 -169545013 + MIR3 SINE MIR 112 194 -14 204 324 95 0 chr6 19738297 19738371 -169541183 - L2 LINE L2 -22 3250 3170 21 57 0 0 chr6 19738544 19738579 -169540975 + AT_rich Low_complexity Low_complexity 1 35 0 2334 65 0 3 chr6 19739884 19740175 -169539379 + AluY SINE Alu 1 290 -21 2138 70 13 47 chr6 19740215 19740516 -169539038 + AluY SINE Alu 1 291 -20 1978 65 4 4 chr6 19741190 19741435 -169538119 + AluY SINE Alu 54 298 -13 2140 116 0 29 chr6 19742616 19742926 -169536628 + AluSg SINE Alu 1 301 -9 332 290 40 24 chr6 19746103 19746227 -169533327 + MIR SINE MIR 24 149 -113 283 114 0 0 chr6 19746228 19746272 -169533282 - L1MB4 LINE L1 -124 6056 6013 733 169 0 0 chr6 19746296 19746420 -169533134 + FRAM SINE Alu 36 159 -17 2303 126 59 0 chr6 19746426 19746661 -169532893 - L1MB2 LINE L1 -153 6018 5748 1971 115 15 78 chr6 19746661 19746992 -169532562 - AluSx SINE Alu -2 310 1 2303 126 59 0 chr6 19746992 19747160 -169532394 - L1MB2 LINE L1 -423 5748 5591 1136 153 121 7 chr6 19747259 19747541 -169532013 - L1MA9 LINE L1 -9 6303 5990 2461 60 0 7 chr6 19748288 19748588 -169530966 + AluY SINE Alu 1 298 -13 453 225 14 67 chr6 19748967 19749191 -169530363 - L2 LINE L2 -1 3312 3017 413 235 20 0 chr6 19750249 19750351 -169529203 - U13 snRNA snRNA 0 104 1 376 240 42 10 chr6 19750487 19750583 -169528971 + MIR SINE MIR 55 153 -55 354 211 60 96 chr6 19750782 19750948 -169528606 - MER103 DNA DNA -1 165 6 2175 144 87 41 chr6 19751971 19752407 -169527147 - MSTB2 LTR MaLR -1 456 1 462 300 18 59 chr6 19752573 19752743 -169526811 + MIR SINE MIR 2 164 -98 2191 101 0 10 chr6 19753440 19753773 -169525781 - AluSg SINE Alu 0 310 1 247 282 51 0 chr6 19754210 19754288 -169525266 - L3 LINE CR1 -1 1576 1495 1087 277 108 2 chr6 19754348 19754756 -169524798 - L2 LINE L2 -1 3312 2856 396 0 0 0 chr6 19754756 19754800 -169524754 + (TG)n Simple_repeat Simple_repeat 2 45 0 1087 277 108 2 chr6 19754800 19754817 -169524737 - L2 LINE L2 -457 2856 2842 1530 145 167 38 chr6 19754817 19755099 -169524455 - MLT2B1 LTR ERVL -94 426 83 1775 122 134 15 chr6 19755099 19755434 -169524120 - THE1C LTR MaLR 0 375 1 1530 145 167 38 chr6 19755434 19755523 -169524031 - MLT2B1 LTR ERVL -437 83 7 507 209 18 18 chr6 19755527 19755637 -169523917 - L2 LINE L2 -633 2681 2572 239 304 43 9 chr6 19755666 19755781 -169523773 + MIR SINE MIR 120 238 -24 261 369 45 25 chr6 19755805 19756003 -169523551 - L3 LINE CR1 -99 1478 1277 267 300 146 0 chr6 19756146 19756256 -169523298 + MIR3 SINE MIR 34 159 -49 2203 132 3 0 chr6 19756273 19756583 -169522971 - AluSq SINE Alu -2 311 1 183 268 0 0 chr6 19756622 19756663 -169522891 - L3 LINE CR1 -351 1226 1186 334 325 16 47 chr6 19756900 19757091 -169522463 + LTR16A LTR ERVL 181 365 -85 1985 136 51 0 chr6 19757407 19757702 -169521852 + AluSx SINE Alu 1 310 -2 2124 126 3 3 chr6 19758416 19758725 -169520829 - AluSq SINE Alu -4 309 1 199 293 89 70 chr6 19759267 19759526 -169520028 - L2 LINE L2 -198 3074 2811 2373 104 0 0 chr6 19759828 19760135 -169519419 - AluSc SINE Alu 0 309 3 324 0 0 0 chr6 19760317 19760353 -169519201 + (TA)n Simple_repeat Simple_repeat 2 37 0 2192 112 34 0 chr6 19760353 19760648 -169518906 - AluSx SINE Alu -7 305 1 471 282 90 29 chr6 19760804 19761193 -169518361 - L1ME LINE L1 -302 5819 5401 193 145 118 158 chr6 19761883 19761959 -169517595 - MIR SINE MIR -103 159 87 21 82 0 0 chr6 19763460 19763509 -169516045 + AT_rich Low_complexity Low_complexity 1 49 0 1137 179 153 58 chr6 19763757 19764070 -169515484 + MER2 DNA MER2_type 2 344 0 961 200 88 117 chr6 19764093 19764468 -169515086 - MLT1A1 LTR MaLR 0 365 2 263 224 35 0 chr6 19765697 19765755 -169513799 - MER5B DNA MER1_type -1 177 118 4121 176 45 27 chr6 19765760 19767594 -169511960 + L1MB8 LINE L1 4282 6161 -17 28 48 0 0 chr6 19767632 19767674 -169511880 + AT_rich Low_complexity Low_complexity 1 42 0 555 290 0 0 chr6 19767684 19767815 -169511739 - MER5B DNA MER1_type -47 131 1 389 303 133 6 chr6 19767825 19767990 -169511564 + MER5A DNA MER1_type 4 189 0 572 300 173 35 chr6 19768271 19768845 -169510709 - L2 LINE L2 -1123 2191 1539 1449 135 0 41 chr6 19768948 19769192 -169510362 - MER46A DNA MER2_type 0 236 3 277 324 48 69 chr6 19769231 19769376 -169510178 - L2 LINE L2 -24 3248 3107 1836 169 10 0 chr6 19769827 19770117 -169509437 + AluSx SINE Alu 1 293 -19 387 0 0 0 chr6 19770128 19770171 -169509383 + (CA)n Simple_repeat Simple_repeat 2 44 0 1515 157 56 21 chr6 19771534 19771821 -169507733 + AluJo SINE Alu 1 297 -15 269 239 84 0 chr6 19772054 19772125 -169507429 - MIR SINE MIR -98 164 88 240 222 0 19 chr6 19772491 19772545 -169507009 - L3 LINE CR1 -1 1576 1524 267 79 0 0 chr6 19773891 19773929 -169505625 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 261 99 70 chr6 19773931 19774073 -169505481 - MIR SINE MIR -89 173 28 345 239 65 19 chr6 19774577 19774732 -169504822 - L1ME4a LINE L1 -249 5872 5711 291 218 0 77 chr6 19775472 19775642 -169503912 + T-rich Low_complexity Low_complexity 4 160 0 2095 109 89 9 chr6 19776821 19777168 -169502386 + THE1C LTR MaLR 1 375 0 189 195 98 0 chr6 19777511 19777552 -169502002 - L2 LINE L2 -5 3267 3223 * 518 259 74 65 chr6 19777528 19777744 -169501810 - MIR SINE MIR -20 242 25 1786 171 0 27 chr6 19777764 19778062 -169501492 + AluJo SINE Alu 1 290 -22 213 314 39 0 chr6 19778132 19778234 -169501320 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 223 286 81 87 chr6 19778686 19778847 -169500707 - L2 LINE L2 -36 3236 3077 866 213 45 15 chr6 19778967 19779169 -169500385 - MER3 DNA MER1_type 0 209 2 1456 178 86 27 chr6 19779315 19779338 -169500216 - AluJo SINE Alu -3 309 289 195 42 0 0 chr6 19779338 19779362 -169500192 + (TC)n Simple_repeat Simple_repeat 2 25 0 1456 178 86 27 chr6 19779362 19779630 -169499924 - AluJo SINE Alu -23 289 1 1889 122 58 3 chr6 19779815 19780110 -169499444 + AluY SINE Alu 1 311 0 1685 169 68 12 chr6 19780811 19781136 -169498418 - MER2 DNA MER2_type 0 344 2 2428 85 0 0 chr6 19783469 19783775 -169495779 - AluY SINE Alu -5 306 1 2353 214 66 49 chr6 19784192 19784533 -169495021 + L1MC4a LINE L1 6928 7262 -733 3025 23 0 0 chr6 19784533 19784882 -169494672 + L1PA4 LINE L1 5799 6147 -8 2353 214 66 49 chr6 19784882 19785426 -169494128 + L1MC4a LINE L1 7262 7951 -44 187 324 67 29 chr6 19785613 19785718 -169493836 - MIR SINE MIR -70 192 84 249 295 93 23 chr6 19785880 19786009 -169493545 + L2 LINE L2 3173 3310 -3 1689 188 3 14 chr6 19786010 19786302 -169493252 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr6 19786574 19786602 -169492952 + AT_rich Low_complexity Low_complexity 1 28 0 745 219 30 12 chr6 19790535 19790704 -169488850 + MIR SINE MIR 41 212 -50 312 236 42 14 chr6 19791268 19791340 -169488214 - MIR SINE MIR -108 154 81 2414 175 68 11 chr6 19791391 19791963 -169487591 - L1MB4 LINE L1 -1 6179 5575 24 0 0 0 chr6 19791970 19791994 -169487560 + AT_rich Low_complexity Low_complexity 1 24 0 201 304 36 0 chr6 19792032 19792088 -169487466 - MIR3 SINE MIR -39 169 112 2170 120 7 0 chr6 19792107 19792415 -169487139 - AluSx SINE Alu -2 310 1 266 290 113 21 chr6 19792840 19793026 -169486528 - L3 LINE CR1 -741 836 634 570 232 49 0 chr6 19795519 19795661 -169483893 + MER20 DNA MER1_type 1 149 -70 407 35 18 0 chr6 19795695 19795752 -169483802 + (TG)n Simple_repeat Simple_repeat 2 59 0 281 227 45 0 chr6 19795769 19795835 -169483719 + MER20 DNA MER1_type 150 218 -1 1604 264 283 21 chr6 19795848 19796996 -169482558 - L2 LINE L2 -63 3250 2404 216 0 0 0 chr6 19796996 19797020 -169482534 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1604 264 283 21 chr6 19797020 19797348 -169482206 - L2 LINE L2 -909 2404 1325 244 203 0 51 chr6 19797425 19797484 -169482070 - L2 LINE L2 0 3313 3258 349 225 181 19 chr6 19797496 19797543 -169482011 + MER112 DNA MER1_type 23 61 -199 261 0 0 0 chr6 19797543 19797572 -169481982 + (CA)n Simple_repeat Simple_repeat 1 29 0 349 225 181 19 chr6 19797572 19797684 -169481870 + MER112 DNA MER1_type 61 208 -52 188 313 0 0 chr6 19797807 19797855 -169481699 - L2 LINE L2 -27 3245 3198 728 140 86 50 chr6 19798494 19798716 -169480838 - L1MA8 LINE L1 -2 6289 6060 666 198 25 64 chr6 19799131 19799159 -169480395 + MER63A DNA MER1_type 50 78 -1610 2158 102 3 7 chr6 19799159 19799453 -169480101 - AluSx SINE Alu -19 293 1 666 198 25 64 chr6 19799453 19799581 -169479973 + MER63A DNA MER1_type 78 200 -10 182 254 189 49 chr6 19800048 19800170 -169479384 + L2 LINE L2 3134 3272 0 1670 188 0 7 chr6 19801638 19801941 -169477613 - AluJb SINE Alu -11 301 1 2382 93 3 0 chr6 19801992 19802292 -169477262 - AluSx SINE Alu -11 301 1 310 285 65 49 chr6 19802306 19802429 -169477125 - L1MC4a LINE L1 -1922 5886 5762 187 283 0 0 chr6 19802577 19802623 -169476931 - L3 LINE CR1 -2 1575 1530 638 273 95 65 chr6 19802725 19803124 -169476430 - MLT1L LTR MaLR -4 611 201 203 267 30 79 chr6 19803262 19803363 -169476191 - L3 LINE CR1 -196 1381 1286 2478 78 0 0 chr6 19804767 19805076 -169474478 - AluY SINE Alu -2 309 1 2034 117 7 7 chr6 19805633 19805923 -169473631 + AluSx SINE Alu 1 290 -22 2155 114 0 0 chr6 19806784 19807090 -169472464 - AluSx SINE Alu 0 308 3 286 303 34 42 chr6 19807463 19807566 -169471988 + MIR SINE MIR 50 153 -109 1299 159 26 9 chr6 19807566 19807798 -169471756 - MER46A DNA MER2_type 0 236 1 286 303 34 42 chr6 19807798 19807813 -169471741 + MIR SINE MIR 153 167 -95 2268 178 55 34 chr6 19808883 19809377 -169470177 - MLT1D LTR MaLR 0 505 2 227 200 18 0 chr6 19809440 19809495 -169470059 + CT-rich Low_complexity Low_complexity 2 57 0 326 329 175 31 chr6 19810864 19811418 -169468136 + L2 LINE L2 1603 2236 -1078 22 35 0 0 chr6 19811911 19811940 -169467614 + AT_rich Low_complexity Low_complexity 1 29 0 2509 110 22 0 chr6 19812574 19812930 -169466624 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr6 19813026 19813065 -169466489 + AT_rich Low_complexity Low_complexity 1 39 0 1568 208 30 33 chr6 19813339 19813704 -169465850 - MLT1A2 LTR MaLR -10 364 1 183 42 0 0 chr6 19816250 19816274 -169463280 + (T)n Simple_repeat Simple_repeat 1 24 0 1851 168 3 0 chr6 19816496 19816794 -169462760 - AluJo SINE Alu -12 300 2 1996 83 3 119 chr6 19817907 19818243 -169461311 + AluSp SINE Alu 1 297 -6 189 211 211 0 chr6 19818415 19818472 -169461082 + MIR3 SINE MIR 133 201 -7 2089 123 7 7 chr6 19820625 19820926 -169458628 - AluSx SINE Alu -11 301 1 354 274 34 75 chr6 19821266 19821412 -169458142 - MIR SINE MIR -74 188 49 765 170 27 67 chr6 19821463 19821573 -169457981 - MLT1E3 LTR MaLR -43 581 468 2342 91 3 0 chr6 19821573 19821869 -169457685 + AluSc SINE Alu 1 297 -12 765 170 27 67 chr6 19821869 19822063 -169457491 - MLT1E3 LTR MaLR -156 468 208 280 283 98 0 chr6 19822728 19822820 -169456734 + MIR3 SINE MIR 93 193 -15 2476 71 0 3 chr6 19823570 19823878 -169455676 + AluY SINE Alu 5 311 0 22 80 0 0 chr6 19824148 19824198 -169455356 + AT_rich Low_complexity Low_complexity 1 50 0 848 199 6 0 chr6 19824229 19824385 -169455169 - FRAM SINE Alu -19 157 1 1932 144 7 16 chr6 19824389 19824694 -169454860 - AluJb SINE Alu -10 302 1 2294 115 0 6 chr6 19824742 19825054 -169454500 - AluSx SINE Alu -2 310 1 291 321 18 72 chr6 19825586 19825633 -169453921 - L2 LINE L2 -552 2762 2714 2012 141 0 7 chr6 19825633 19825932 -169453622 + AluJb SINE Alu 6 302 -10 291 321 18 72 chr6 19825932 19826105 -169453449 - L2 LINE L2 -600 2714 2554 495 0 0 0 chr6 19827255 19827310 -169452244 + (TA)n Simple_repeat Simple_repeat 2 56 0 421 301 97 5 chr6 19827461 19827696 -169451858 - L1 LINE L1 -2860 3286 3028 241 235 131 99 chr6 19828311 19828532 -169451022 - HAL1 LINE L1 -111 2396 2169 1454 158 18 94 chr6 19828826 19829095 -169450459 + L1MC1 LINE L1 6030 6271 -62 2277 138 40 11 chr6 19829095 19829449 -169450105 + THE1B LTR MaLR 1 364 0 1454 158 18 94 chr6 19829449 19829508 -169450046 + L1MC1 LINE L1 6271 6333 0 441 246 42 28 chr6 19829525 19829667 -169449887 + MIR SINE MIR 5 148 -114 197 289 0 0 chr6 19829680 19829725 -169449829 + L2 LINE L2 3217 3261 -11 2087 132 3 0 chr6 19829762 19830065 -169449489 - AluSx SINE Alu -8 304 1 1636 140 114 7 chr6 19830445 19830717 -169448837 - AluSg1 SINE Alu -8 301 1 189 0 0 0 chr6 19830805 19830826 -169448728 + (T)n Simple_repeat Simple_repeat 1 21 0 1085 286 208 33 chr6 19830911 19831899 -169447655 - HAL1 LINE L1 -604 1903 744 261 0 0 0 chr6 19832035 19832064 -169447490 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1823 118 20 104 chr6 19832621 19832968 -169446586 - AluYb8 SINE Alu 0 318 1 242 261 101 0 chr6 19833101 19833170 -169446384 - L1MC2 LINE L1 -57 6287 6212 1719 251 100 69 chr6 19833829 19834578 -169444976 - LTR41 LTR ERVL -1 772 1 427 276 17 9 chr6 19835820 19835936 -169443618 + L2 LINE L2 3197 3313 0 207 344 57 45 chr6 19837311 19837555 -169441999 - MIR SINE MIR -3 259 13 330 26 0 0 chr6 19837772 19837811 -169441743 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1133 243 9 0 chr6 19838232 19838454 -169441100 - MER58A DNA MER1_type 0 224 1 217 269 0 39 chr6 19838476 19838528 -169441026 + L2 LINE L2 3246 3295 -18 606 297 24 19 chr6 19838837 19839049 -169440505 - MLT1K LTR MaLR 0 588 376 221 329 148 33 chr6 19839270 19839629 -169439925 - L2 LINE L2 -337 2977 2578 2121 101 0 37 chr6 19840930 19841259 -169438295 + AluSq SINE Alu 1 318 0 279 323 31 31 chr6 19841354 19841484 -169438070 - L2 LINE L2 -9 3263 3134 404 253 107 20 chr6 19842437 19842587 -169436967 - MIR SINE MIR -11 251 89 288 200 15 15 chr6 19842780 19842845 -169436709 + MER112 DNA MER1_type 5 69 -191 278 314 42 42 chr6 19843992 19844110 -169435444 - L2 LINE L2 -14 3258 3141 1409 159 131 68 chr6 19844472 19844824 -169434730 - MLT1A2 LTR MaLR 0 374 1 323 325 123 0 chr6 19845792 19845946 -169433608 - MIR3 SINE MIR -5 203 31 215 326 65 11 chr6 19846564 19846656 -169432898 + MIR SINE MIR 31 127 -81 1774 141 11 0 chr6 19846674 19846937 -169432617 - AluSg SINE Alu -44 266 1 181 247 35 82 chr6 19846940 19847025 -169432529 + MIR3 SINE MIR 119 199 -9 558 29 0 0 chr6 19847674 19847742 -169431812 + (CA)n Simple_repeat Simple_repeat 2 69 0 469 106 0 59 chr6 19847744 19847829 -169431725 - AluJo SINE Alu -3 309 230 1034 119 0 50 chr6 19847834 19847993 -169431561 - AluJo SINE Alu -161 151 1 572 280 19 6 chr6 19848634 19848791 -169430763 - MER5B DNA MER1_type -13 165 7 206 236 67 90 chr6 19849057 19849146 -169430408 + MIR SINE MIR 120 206 -56 233 245 0 0 chr6 19849232 19849285 -169430269 + (TA)n Simple_repeat Simple_repeat 1 53 0 191 242 23 8 chr6 19849301 19849433 -169430121 + (TA)n Simple_repeat Simple_repeat 1 134 0 2100 189 23 21 chr6 19849799 19850227 -169429327 + MER54A LTR ERVL 473 901 0 2350 92 0 0 chr6 19851559 19851851 -169427703 + AluSx SINE Alu 1 292 -20 212 318 91 27 chr6 19853335 19853445 -169426109 + L2 LINE L2 3144 3260 -12 37 69 0 0 chr6 19854448 19854520 -169425034 + AT_rich Low_complexity Low_complexity 1 72 0 917 207 0 69 chr6 19855555 19855631 -169423923 + MER5A DNA MER1_type 1 81 -108 1557 69 8 69 chr6 19855631 19855762 -169423792 + L1PA10 LINE L1 5939 6050 -118 4557 110 8 15 chr6 19855762 19856378 -169423176 - LTR9 LTR ERV1 0 612 1 1557 69 8 69 chr6 19856378 19856491 -169423063 + L1PA10 LINE L1 6050 6168 0 917 207 0 69 chr6 19856491 19856617 -169422937 + MER5A DNA MER1_type 81 189 0 675 221 29 23 chr6 19856856 19857028 -169422526 + MER46C DNA MER2_type 1 173 -165 575 165 96 0 chr6 19857391 19857534 -169422020 - L1MC3 LINE L1 -167 7828 7441 390 136 0 15 chr6 19857534 19857600 -169421954 - L1MA5 LINE L1 0 6300 6236 2091 127 16 0 chr6 19857855 19858162 -169421392 - AluSx SINE Alu 0 312 1 2288 128 11 16 chr6 19858188 19858564 -169420990 - L1MA5 LINE L1 -61 6239 5866 835 167 39 13 chr6 19858564 19858720 -169420834 - L1MC3 LINE L1 -329 7456 7297 665 296 116 53 chr6 19858877 19859275 -169420279 - MLT1K LTR MaLR -23 565 143 887 297 22 0 chr6 19859471 19859693 -169419861 - MIR SINE MIR -35 227 1 3916 164 46 31 chr6 19859712 19860480 -169419074 + LTR1 LTR ERV1 7 785 0 227 307 20 59 chr6 19860734 19860835 -169418719 + LTR16A LTR ERVL 346 442 -8 322 313 30 15 chr6 19861025 19861156 -169418398 + L2 LINE L2 3009 3141 -172 293 242 48 18 chr6 19861158 19861323 -169418231 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 315 0 0 0 chr6 19861336 19861371 -169418183 + (CA)n Simple_repeat Simple_repeat 1 35 0 475 269 50 0 chr6 19861385 19861504 -169418050 + L2 LINE L2 3188 3312 -1 2172 99 3 0 chr6 19861537 19861849 -169417705 + AluSx SINE Alu 1 313 0 390 297 120 17 chr6 19862059 19862234 -169417320 + MIR SINE MIR 57 249 -13 210 299 65 28 chr6 19862266 19862373 -169417181 + L3 LINE CR1 1462 1572 -5 578 282 20 7 chr6 19862489 19862638 -169416916 + MIR SINE MIR 1 151 -111 2453 91 0 0 chr6 19862822 19863129 -169416425 + AluSc SINE Alu 1 307 -2 21 0 0 0 chr6 19863979 19864000 -169415554 + AT_rich Low_complexity Low_complexity 1 21 0 419 202 76 19 chr6 19864033 19864166 -169415388 + L1PB4 LINE L1 5919 6061 -94 28 48 0 0 chr6 19865374 19865416 -169414138 + AT_rich Low_complexity Low_complexity 1 42 0 254 115 19 39 chr6 19865684 19865736 -169413818 - L1MA9 LINE L1 0 6312 6262 22 56 0 0 chr6 19865737 19865773 -169413781 + AT_rich Low_complexity Low_complexity 1 36 0 1773 85 29 16 chr6 19865773 19866019 -169413535 - L1PB1 LINE L1 -1 6150 5902 570 238 223 15 chr6 19866020 19866285 -169413269 - L1ME2 LINE L1 -34 6130 5811 1055 103 14 0 chr6 19866312 19866457 -169413097 - AluSg/x SINE Alu -93 219 73 2078 207 148 5 chr6 19866457 19867443 -169412111 - L1ME2 LINE L1 -347 5817 4681 474 238 0 24 chr6 19867448 19867574 -169411980 - L1ME2 LINE L1 -1904 4242 4120 1225 196 31 9 chr6 19868013 19868290 -169411264 + L1ME LINE L1 5328 5609 -512 473 210 0 0 chr6 19868847 19868928 -169410626 - AluJb SINE Alu -189 123 43 25 31 0 0 chr6 19868966 19868998 -169410556 + AT_rich Low_complexity Low_complexity 1 32 0 2143 137 0 3 chr6 19869072 19869379 -169410175 - AluSx SINE Alu -4 308 3 705 254 160 39 chr6 19869390 19869952 -169409602 - L1ME4a LINE L1 -150 5971 5342 393 310 18 0 chr6 19869952 19870065 -169409489 - L2 LINE L2 0 3313 3199 1869 120 53 3 chr6 19870068 19870351 -169409203 - AluSx SINE Alu -15 297 1 385 321 104 49 chr6 19870493 19870820 -169408734 - L1ME4a LINE L1 -1099 5047 4703 294 200 125 25 chr6 19870949 19871069 -169408485 - L1ME4a LINE L1 0 6121 5990 318 212 151 50 chr6 19871138 19871317 -169408237 - L1ME4a LINE L1 -234 5887 5691 2497 119 8 22 chr6 19871462 19871831 -169407723 + THE1B LTR MaLR 1 364 0 2360 82 7 0 chr6 19871879 19872183 -169407371 + AluSp SINE Alu 1 306 -7 970 117 0 48 chr6 19872196 19872341 -169407213 + AluSg SINE Alu 2 139 -171 195 100 0 0 chr6 19872475 19872505 -169407049 + (TG)n Simple_repeat Simple_repeat 1 30 0 2024 61 79 7 chr6 19872938 19873216 -169406338 + AluY SINE Alu 1 298 -13 2005 164 16 16 chr6 19873922 19874288 -169405266 - MER47A DNA MER2_type 0 366 1 837 252 32 5 chr6 19874372 19874590 -169404964 + MER58A DNA MER1_type 1 224 0 438 281 30 55 chr6 19874845 19875009 -169404545 + L2 LINE L2 3134 3293 -20 763 185 0 51 chr6 19875015 19875193 -169404361 - MER104 DNA Tc2 -5 175 7 452 325 25 6 chr6 19877182 19877339 -169402215 + MIR3 SINE MIR 18 177 -31 559 326 85 17 chr6 19877490 19877726 -169401828 - L3 LINE CR1 -3 1574 1323 374 306 189 22 chr6 19877843 19878023 -169401531 - MIR SINE MIR -13 249 40 346 346 9 9 chr6 19878057 19878164 -169401390 - MIR SINE MIR -62 146 40 1071 182 0 0 chr6 19878339 19878509 -169401045 - AluJb SINE Alu -9 303 134 1907 144 11 0 chr6 19878509 19878794 -169400760 - AluSx SINE Alu -11 301 14 289 378 106 0 chr6 19878796 19878984 -169400570 - L3 LINE CR1 -469 1108 901 28 48 0 0 chr6 19879521 19879563 -169399991 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr6 19881090 19881119 -169398435 + AT_rich Low_complexity Low_complexity 1 29 0 992 186 33 0 chr6 19881129 19881312 -169398242 - MER5A DNA MER1_type 0 189 1 260 332 22 90 chr6 19881504 19881772 -169397782 + L2 LINE L2 2948 3197 -75 301 221 97 18 chr6 19882260 19882373 -169397181 + MER103 DNA DNA 11 132 -34 896 158 0 0 chr6 19882390 19882565 -169396989 - FLAM_C SINE Alu 0 175 1 609 120 0 0 chr6 19882782 19882874 -169396680 - AluY SINE Alu -2 309 218 1998 143 31 20 chr6 19883211 19883530 -169396024 - MER46B DNA MER2_type -2495 236 36 2195 143 3 0 chr6 19883530 19883838 -169395716 - AluSx SINE Alu -3 309 1 1998 143 31 20 chr6 19883838 19883875 -169395679 - MER46B DNA MER2_type -2695 36 1 271 288 0 0 chr6 19886996 19887062 -169392492 - L2 LINE L2 -10 3303 3238 1726 151 0 15 chr6 19887065 19887336 -169392218 - AluSx SINE Alu -13 299 33 292 127 0 56 chr6 19887454 19887525 -169392029 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr6 19887624 19887647 -169391907 + AT_rich Low_complexity Low_complexity 1 23 0 674 254 143 37 chr6 19887665 19888015 -169391539 - MLT1J2 LTR MaLR 0 450 64 1885 79 12 4 chr6 19888625 19888878 -169390676 + L1PA10 LINE L1 5905 6159 -9 943 176 0 0 chr6 19889423 19889600 -169389954 - AluJo/FRAM SINE Alu 0 306 130 467 189 0 0 chr6 19889600 19889674 -169389880 - AluJ/FLAM SINE Alu -232 80 7 195 333 0 27 chr6 19890259 19890334 -169389220 - MIR SINE MIR -61 147 75 7821 130 31 26 chr6 19891927 19893331 -169386223 + L1M4c LINE L1 18 1428 -4956 2015 120 0 27 chr6 19893353 19893652 -169385902 + AluY SINE Alu 1 291 -20 6325 85 0 0 chr6 19893653 19894569 -169384985 - L1PA14 LINE L1 -11 6150 5234 784 128 0 128 chr6 19894570 19894765 -169384789 + L1PA14 LINE L1 5077 5246 -900 * 4587 119 34 26 chr6 19894761 19895608 -169383946 + L1M4c LINE L1 1418 2271 -4113 * 13975 34 0 4 chr6 19895606 19897387 -169382167 - L1PA5 LINE L1 -1168 4978 3205 7513 32 2 0 chr6 19897388 19898558 -169380996 + L1PA5 LINE L1 4978 6149 -5 528 113 26 35 chr6 19898558 19898667 -169380887 + L1M4c LINE L1 2264 2371 -4013 1857 162 16 21 chr6 19898673 19899049 -169380505 + L1MB3 LINE L1 5810 6183 0 261 250 62 42 chr6 19899126 19899222 -169380332 + L2 LINE L2 3208 3305 -8 3061 184 22 30 chr6 19899284 19899924 -169379630 + MER82 DNA MER2_type 19 653 0 1406 134 0 13 chr6 19900593 19900832 -169378722 - L1MA9 LINE L1 0 6312 6077 2438 34 24 0 chr6 19901095 19901389 -169378165 - L1PA5 LINE L1 0 6154 5854 3814 35 6 0 chr6 19901389 19901870 -169377684 + L1P2 LINE L1 5300 5783 -371 390 216 46 106 chr6 19902308 19902712 -169376842 + MLT1C LTR MaLR 1 345 -122 190 256 44 100 chr6 19905528 19905688 -169373866 + MIR SINE MIR 56 206 -56 1829 157 27 0 chr6 19906146 19906439 -169373115 + AluSx SINE Alu 3 303 -9 792 291 10 33 chr6 19906660 19906838 -169372716 + LTR16B LTR ERVL 173 354 -110 189 0 0 0 chr6 19906838 19906859 -169372695 + (CAT)n Simple_repeat Simple_repeat 1 21 0 2176 110 3 0 chr6 19906859 19907150 -169372404 - AluSg SINE Alu -18 292 1 792 291 10 33 chr6 19907150 19907269 -169372285 + LTR16B LTR ERVL 352 464 0 229 236 97 28 chr6 19907798 19907870 -169371684 + MIR3 SINE MIR 110 186 -22 597 252 31 83 chr6 19908278 19908532 -169371022 - MER102b DNA MER1_type -1 340 100 1829 180 0 7 chr6 19908546 19908846 -169370708 - AluJo SINE Alu -9 303 6 25 0 0 0 chr6 19908851 19908876 -169370678 + AT_rich Low_complexity Low_complexity 1 25 0 1524 182 19 0 chr6 19908978 19909247 -169370307 + AluJo SINE Alu 39 312 0 490 328 50 0 chr6 19909340 19909520 -169370034 - MIR SINE MIR 0 262 74 316 196 27 18 chr6 19910733 19910845 -169368709 + CT-rich Low_complexity Low_complexity 2 114 0 293 245 117 10 chr6 19911191 19911253 -169368301 + MIR SINE MIR 20 74 -134 1800 142 15 89 chr6 19911253 19911591 -169367963 - AluSq SINE Alu 0 313 1 293 245 117 10 chr6 19911591 19911649 -169367905 + MIR SINE MIR 74 160 -48 1936 173 24 0 chr6 19911727 19912063 -169367491 - MER7A DNA MER2_type -4 342 1 22 0 0 0 chr6 19912175 19912197 -169367357 + AT_rich Low_complexity Low_complexity 1 22 0 510 266 9 0 chr6 19912681 19912790 -169366764 - MER81 DNA DNA -1 113 4 358 262 14 7 chr6 19913043 19913090 -169366464 + (TA)n Simple_repeat Simple_repeat 1 46 -100 2017 88 4 0 chr6 19913090 19913352 -169366202 + AluY SINE Alu 39 301 -10 358 262 14 7 chr6 19913352 19913449 -169366105 + (TA)n Simple_repeat Simple_repeat 46 146 0 198 0 0 0 chr6 19913548 19913570 -169365984 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 681 230 8 4 chr6 19914213 19914469 -169365085 + CT-rich Low_complexity Low_complexity 1 257 0 854 166 12 14 chr6 19914486 19914992 -169364562 + CT-rich Low_complexity Low_complexity 1 505 0 681 197 6 11 chr6 19915006 19915184 -169364370 + CT-rich Low_complexity Low_complexity 4 180 0 376 224 32 115 chr6 19915617 19915773 -169363781 - MIR SINE MIR -59 203 61 497 276 135 20 chr6 19915911 19916364 -169363190 + L1ME LINE L1 5261 5765 -356 1457 114 10 87 chr6 19916426 19916661 -169362893 - L1MA8 LINE L1 -279 6012 5803 1783 123 98 4 chr6 19916661 19916937 -169362617 - AluSx SINE Alu -6 306 5 1457 114 10 87 chr6 19916937 19917000 -169362554 - L1MA8 LINE L1 -488 5803 5737 568 345 102 34 chr6 19917130 19917853 -169361701 - L2 LINE L2 -1771 1543 871 727 174 76 14 chr6 19917853 19917997 -169361557 + FRAM SINE Alu 1 153 -13 1702 174 26 66 chr6 19918007 19918162 -169361392 + MLT1A1 LTR MaLR 1 161 -204 1607 187 53 13 chr6 19918162 19918278 -169361276 + AluJo SINE Alu 1 111 -201 558 67 0 0 chr6 19918278 19918353 -169361201 + (CA)n Simple_repeat Simple_repeat 1 75 0 1607 187 53 13 chr6 19918353 19918536 -169361018 + AluJo SINE Alu 111 312 0 1702 174 26 66 chr6 19918536 19918760 -169360794 + MLT1A1 LTR MaLR 161 365 0 568 345 102 34 chr6 19918760 19918876 -169360678 - L2 LINE L2 -2451 863 635 336 24 0 0 chr6 19919742 19919783 -169359771 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 248 103 34 chr6 19919984 19920101 -169359453 + 7SK RNA RNA 1 125 -68 508 107 0 0 chr6 19920708 19920783 -169358771 - MADE1 DNA Mariner 0 80 6 207 344 39 31 chr6 19921633 19921761 -169357793 + MIR3 SINE MIR 7 135 -73 586 172 10 0 chr6 19922626 19922725 -169356829 - MER81 DNA DNA -1 113 14 1208 83 0 0 chr6 19922973 19923142 -169356412 - L1MA2 LINE L1 0 6304 6136 1637 42 0 0 chr6 19923142 19923335 -169356219 + L1PA3 LINE L1 5960 6152 -3 5889 110 42 4 chr6 19923343 19924715 -169354839 - L1MA1 LINE L1 -170 6132 4697 28 0 0 0 chr6 19925083 19925111 -169354443 + AT_rich Low_complexity Low_complexity 1 28 0 4604 83 7 0 chr6 19925115 19925691 -169353863 - L1PA10 LINE L1 -11 6157 5578 657 306 104 87 chr6 19925854 19926612 -169352942 + HAL1b LINE L1 1 1839 -668 183 258 0 61 chr6 19927098 19927164 -169352390 + L2 LINE L2 3252 3313 0 21 0 0 0 chr6 19927247 19927268 -169352286 + AT_rich Low_complexity Low_complexity 1 21 0 1936 150 7 3 chr6 19927421 19927727 -169351827 - AluSx SINE Alu -5 307 1 195 348 0 0 chr6 19928715 19928784 -169350770 + MIR SINE MIR 194 262 0 325 322 190 5 chr6 19928920 19929131 -169350423 + L2 LINE L2 1825 2074 -1240 199 390 0 0 chr6 19929224 19929301 -169350253 - L2 LINE L2 -9 3263 3187 430 294 84 52 chr6 19929343 19929690 -169349864 + MLT1I LTR MaLR 40 397 -12 207 100 0 0 chr6 19930483 19930513 -169349041 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 651 31 41 10 chr6 19930520 19930617 -169348937 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1904 142 0 4 chr6 19930618 19930893 -169348661 - AluSx SINE Alu -38 274 1 3673 113 14 2 chr6 19931085 19931591 -169347963 - MER75 DNA T2_type 0 514 3 2415 106 0 0 chr6 19932039 19932351 -169347203 + AluSx SINE Alu 1 312 0 210 306 100 96 chr6 19932387 19932969 -169346585 - L2 LINE L2 -455 2859 2276 1038 189 92 10 chr6 19933324 19933530 -169346024 - MER58A DNA MER1_type -1 223 1 329 319 57 97 chr6 19935687 19935935 -169343619 - L3 LINE CR1 -107 1470 1233 353 241 12 12 chr6 19936129 19936212 -169343342 - MIR3 SINE MIR -28 180 98 2073 104 14 4 chr6 19936763 19937083 -169342471 + AluSc SINE Alu 1 323 0 198 71 0 0 chr6 19937977 19938005 -169341549 + (GGGAGA)n Simple_repeat Simple_repeat 3 30 0 757 124 0 0 chr6 19938189 19938302 -169341252 - AluSg/x SINE Alu -1 309 197 25 0 0 0 chr6 19938485 19938510 -169341044 + AT_rich Low_complexity Low_complexity 1 25 0 1768 161 58 0 chr6 19938570 19938861 -169340693 + AluJb SINE Alu 1 308 -4 204 40 0 0 chr6 19940211 19940236 -169339318 + (T)n Simple_repeat Simple_repeat 1 25 0 215 211 74 84 chr6 19940854 19940949 -169338605 + MIR SINE MIR 158 251 -11 * 218 255 0 0 chr6 19940915 19940966 -169338588 + L2 LINE L2 3263 3313 0 222 91 0 0 chr6 19941403 19941436 -169338118 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2232 129 0 0 chr6 19941990 19942300 -169337254 - AluSx SINE Alu -2 310 1 227 407 19 12 chr6 19942460 19942622 -169336932 + L2 LINE L2 2930 3092 -180 2390 97 3 0 chr6 19942770 19943081 -169336473 + AluSx SINE Alu 1 312 0 289 339 8 0 chr6 19943906 19944033 -169335521 + MIR SINE MIR 132 259 -3 207 292 46 0 chr6 19945707 19945772 -169333782 + L3 LINE CR1 1509 1576 -1 193 26 53 53 chr6 19945803 19945841 -169333713 + (TAAG)n Simple_repeat Simple_repeat 4 41 0 1759 184 3 0 chr6 19946427 19946721 -169332833 - AluJb SINE Alu -17 295 1 222 37 0 0 chr6 19946721 19946748 -169332806 + (T)n Simple_repeat Simple_repeat 1 27 0 205 344 33 11 chr6 19946748 19946838 -169332716 - MIR SINE MIR -92 116 25 2362 82 0 0 chr6 19946869 19947161 -169332393 + AluSc SINE Alu 1 292 -17 216 0 0 0 chr6 19947922 19947946 -169331608 + (T)n Simple_repeat Simple_repeat 1 24 0 2142 101 34 0 chr6 19948534 19948832 -169330722 + AluSq SINE Alu 1 308 -5 511 248 239 10 chr6 19953023 19953333 -169326221 + L1ME4a LINE L1 5736 6116 -5 35 0 0 0 chr6 19953364 19953399 -169326155 + AT_rich Low_complexity Low_complexity 1 35 0 373 266 55 51 chr6 19955468 19955624 -169323930 + MIR SINE MIR 35 191 -62 641 228 137 25 chr6 19955627 19955868 -169323686 + L2 LINE L2 3046 3313 0 546 272 88 55 chr6 19955910 19956127 -169323427 + MIR SINE MIR 2 225 -37 2348 131 70 15 chr6 19956456 19956853 -169322701 - MSTA LTR MaLR -9 419 1 6803 170 59 4 chr6 19956853 19958058 -169321496 - MSTA-int LTR MaLR 0 1651 381 473 324 71 18 chr6 19958224 19958449 -169321105 - MIR SINE MIR -6 256 20 263 302 22 122 chr6 19958684 19958906 -169320648 + L2 LINE L2 3048 3247 -25 398 296 184 14 chr6 19959410 19959633 -169319921 + MIR SINE MIR 2 262 0 278 294 31 47 chr6 19959816 19959932 -169319622 + MIR3 SINE MIR 48 160 -48 281 286 11 0 chr6 19959934 19960025 -169319529 - MER117 DNA MER1_type -2 195 104 184 220 20 20 chr6 19960119 19960169 -169319385 + MIR3 SINE MIR 159 208 0 638 247 20 0 chr6 19961004 19961150 -169318404 - MLT1A1 LTR MaLR 0 365 217 498 337 35 5 chr6 19961592 19961794 -169317760 - MIR SINE MIR -10 252 45 24 0 0 0 chr6 19962874 19962898 -169316656 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr6 19963603 19963656 -169315898 + (TTTCC)n Simple_repeat Simple_repeat 1 53 0 2239 88 18 0 chr6 19963672 19963957 -169315597 - AluSc SINE Alu -19 290 1 243 0 0 0 chr6 19965319 19965346 -169314208 + (T)n Simple_repeat Simple_repeat 1 27 0 2464 164 34 7 chr6 19966138 19966552 -169313002 - MSTA LTR MaLR 0 428 4 6266 180 102 62 chr6 19966553 19968070 -169311484 - MSTA-int LTR MaLR 0 1580 3 2490 164 19 24 chr6 19968077 19968503 -169311051 - MSTA LTR MaLR -4 424 1 1351 146 32 14 chr6 19968503 19968723 -169310831 + MSTB1 LTR MaLR 79 302 -130 234 192 0 0 chr6 19968971 19969023 -169310531 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1178 246 87 58 chr6 19969045 19969549 -169310005 - L1MC4 LINE L1 -142 7900 7382 2301 172 8 14 chr6 19969758 19970125 -169309429 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 19970905 19970933 -169308621 + AT_rich Low_complexity Low_complexity 1 28 0 339 44 0 0 chr6 19971492 19971537 -169308017 + (T)n Simple_repeat Simple_repeat 1 45 0 183 80 0 0 chr6 19971564 19971589 -169307965 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 480 317 180 25 chr6 19971787 19972494 -169307060 - L1ME4a LINE L1 -3 6118 5303 3696 155 11 9 chr6 19972784 19973418 -169306136 + L1MA8 LINE L1 5652 6286 -5 1017 325 123 27 chr6 19973561 19974191 -169305363 + L3 LINE CR1 272 1011 -566 1471 167 147 82 chr6 19974191 19974580 -169304974 - MLT2D LTR ERVL 0 414 1 1017 325 123 27 chr6 19974580 19974830 -169304724 + L3 LINE CR1 1011 1236 -341 637 277 126 25 chr6 19974833 19975111 -169304443 - MLT1K LTR MaLR -2 586 281 7439 151 35 39 chr6 19975144 19976098 -169303456 + L1MA7 LINE L1 3769 4726 -1565 312 48 0 0 chr6 19976098 19976140 -169303414 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7439 151 35 39 chr6 19976140 19977235 -169302319 + L1MA7 LINE L1 4726 5788 -503 201 39 0 0 chr6 19977235 19977261 -169302293 + (CA)n Simple_repeat Simple_repeat 1 26 0 7439 151 35 39 chr6 19977261 19977641 -169301913 + L1MA7 LINE L1 5788 6168 -123 547 335 132 10 chr6 19977826 19978136 -169301418 + L3 LINE CR1 1229 1576 -1 217 246 18 0 chr6 19979074 19979131 -169300423 + MIR SINE MIR 107 164 -98 615 265 74 56 chr6 19979710 19980034 -169299520 - LTR33 LTR ERVL -187 334 5 2347 99 3 0 chr6 19980755 19981058 -169298496 - AluSx SINE Alu 0 312 9 1941 96 37 51 chr6 19982348 19982702 -169296852 + L1PA13 LINE L1 5812 6160 -3 256 303 34 0 chr6 19983024 19983113 -169296441 + MIR SINE MIR 123 214 -48 594 293 66 47 chr6 19983156 19983395 -169296159 - MIR SINE MIR -16 246 7 392 341 101 36 chr6 19983672 19984186 -169295368 - L2 LINE L2 -1 3271 2715 404 321 80 15 chr6 19984486 19984623 -169294931 + MIR3 SINE MIR 47 192 -16 343 383 22 17 chr6 19984771 19984951 -169294603 - MIR3 SINE MIR -13 195 15 1726 219 54 43 chr6 19989998 19990460 -169289094 + MLT1C LTR MaLR 1 467 0 637 193 70 46 chr6 19990932 19991271 -169288283 - MER31B LTR ERV1 -5 461 1 294 191 238 41 chr6 19991662 19991809 -169287745 + LTR33 LTR ERVL 72 247 -276 308 318 129 18 chr6 19992731 19992901 -169286653 + MIR SINE MIR 7 195 -67 471 35 0 0 chr6 19993323 19993380 -169286174 + (CA)n Simple_repeat Simple_repeat 2 58 0 1201 145 28 5 chr6 19993380 19993594 -169285960 - MER46A DNA MER2_type -2 234 16 2495 210 50 39 chr6 19994223 19994808 -169284746 + MLT1E LTR MaLR 3 593 0 586 200 91 24 chr6 19995728 19995893 -169283661 + MER5B DNA MER1_type 1 176 -2 1713 149 82 7 chr6 19996168 19996450 -169283104 - AluJb SINE Alu -9 303 1 259 308 113 13 chr6 19996552 19996711 -169282843 - L2 LINE L2 -188 3084 2910 1734 184 113 30 chr6 19996743 19997184 -169282370 + MLT1D LTR MaLR 28 505 0 2378 71 0 3 chr6 19997342 19997636 -169281918 + AluY SINE Alu 1 293 -18 425 345 14 7 chr6 19997825 19997973 -169281581 - MIR3 SINE MIR -57 151 3 1937 119 0 18 chr6 19998412 19998743 -169280811 - AluSc SINE Alu 0 326 1 22 35 0 0 chr6 19999306 19999335 -169280219 + AT_rich Low_complexity Low_complexity 1 29 0 2641 171 13 6 chr6 19999342 19999864 -169279690 - L1MC2 LINE L1 -19 6325 5800 196 307 72 72 chr6 20000458 20000624 -169278930 + MER5A DNA MER1_type 1 166 -23 736 238 6 0 chr6 20000642 20000806 -169278748 - MER58A DNA MER1_type -14 210 46 1687 168 34 0 chr6 20000825 20001093 -169278461 + AluJb SINE Alu 1 277 -35 3436 138 16 2 chr6 20001110 20001691 -169277863 + L1MB3 LINE L1 5593 6181 -2 282 29 0 0 chr6 20002956 20002991 -169276563 + (TG)n Simple_repeat Simple_repeat 1 35 0 1783 173 35 49 chr6 20003082 20003452 -169276102 + MLT1A1 LTR MaLR 1 365 0 296 258 48 0 chr6 20003993 20004055 -169275499 - MIR SINE MIR -190 72 8 376 275 0 64 chr6 20004226 20004397 -169275157 + MIR SINE MIR 89 248 -14 24569 131 17 20 chr6 20005016 20011414 -169268140 + L1PA8A LINE L1 4 6444 -2 1234 98 0 0 chr6 20014131 20014294 -169265260 - AluSg/x SINE Alu -16 296 134 2196 108 7 3 chr6 20014294 20014599 -169264955 - AluSq SINE Alu -7 306 1 404 257 164 26 chr6 20014787 20014939 -169264615 - MIR SINE MIR -21 241 69 241 128 33 44 chr6 20015567 20015747 -169263807 + (TA)n Simple_repeat Simple_repeat 1 178 0 464 222 7 0 chr6 20016522 20016666 -169262888 + CT-rich Low_complexity Low_complexity 3 147 0 498 170 0 0 chr6 20019643 20019737 -169259817 + CT-rich Low_complexity Low_complexity 4 97 0 647 73 31 0 chr6 20019766 20019862 -169259692 + (TTCTC)n Simple_repeat Simple_repeat 5 103 0 190 333 76 0 chr6 20019864 20019930 -169259624 - L2 LINE L2 -1 3271 3201 805 303 73 62 chr6 20019969 20020807 -169258747 + L2 LINE L2 2437 3276 -37 1034 165 170 116 chr6 20020919 20021289 -169258265 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr6 20025333 20025357 -169254197 + AT_rich Low_complexity Low_complexity 1 24 0 380 250 177 55 chr6 20025928 20026092 -169253462 + MIR3 SINE MIR 18 201 -7 307 395 93 0 chr6 20026305 20026467 -169253087 - L2 LINE L2 -15 3257 3081 2497 151 13 0 chr6 20027262 20027640 -169251914 + MSTB LTR MaLR 1 383 -43 853 336 43 37 chr6 20027812 20028297 -169251257 + MLT1H1 LTR MaLR 41 528 -27 6254 166 23 12 chr6 20028505 20030091 -169249463 + L1MC1 LINE L1 4733 6332 -1 274 242 91 0 chr6 20030220 20030286 -169249268 - MIR SINE MIR -71 191 120 383 277 6 38 chr6 20032609 20032768 -169246786 - HAL1b LINE L1 -4 1344 1191 230 234 31 0 chr6 20032828 20032892 -169246662 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 200 29 14 chr6 20033013 20033083 -169246471 + CT-rich Low_complexity Low_complexity 2 72 0 231 240 128 16 chr6 20033210 20033335 -169246219 - L1P4 LINE L1 -698 5468 5330 1205 218 4 4 chr6 20033580 20033819 -169245735 - AluJo SINE Alu -15 297 59 2583 214 50 19 chr6 20034433 20035290 -169244264 - L1ME LINE L1 -667 5566 4685 2409 263 42 46 chr6 20035301 20036507 -169243047 - L1ME LINE L1 -4386 2010 810 1039 168 0 11 chr6 20036580 20036759 -169242795 - AluSg/x SINE Alu 0 310 134 474 209 95 0 chr6 20036761 20036919 -169242635 - L1ME LINE L1 -5571 825 653 188 189 38 0 chr6 20036961 20037014 -169242540 + (CAATT)n Simple_repeat Simple_repeat 1 55 0 546 258 61 88 chr6 20037065 20037395 -169242159 - MER21B LTR ERV1 -260 603 283 1045 216 8 124 chr6 20037399 20037761 -169241793 - MLT1A2 LTR MaLR 0 374 55 314 328 0 16 chr6 20037767 20037892 -169241662 + L1MEc LINE L1 940 1062 -5334 184 367 92 31 chr6 20038108 20038206 -169241348 - L2 LINE L2 -32 3240 3137 363 321 91 24 chr6 20038924 20039089 -169240465 - MIR SINE MIR -82 180 5 397 311 0 22 chr6 20039170 20039306 -169240248 - MER5A DNA MER1_type -10 168 39 186 255 21 0 chr6 20039315 20039362 -169240192 + MER5B DNA MER1_type 125 172 -6 538 248 161 0 chr6 20039615 20039764 -169239790 + MER5B DNA MER1_type 1 173 -5 198 309 151 8 chr6 20040148 20040274 -169239280 - L2 LINE L2 -8 3305 3162 189 0 0 0 chr6 20040438 20040459 -169239095 + (CA)n Simple_repeat Simple_repeat 2 22 0 197 383 54 40 chr6 20044785 20044934 -169234620 + L2 LINE L2 3004 3154 -118 21 89 0 0 chr6 20044999 20045055 -169234499 + AT_rich Low_complexity Low_complexity 1 56 0 1846 158 24 0 chr6 20045105 20045396 -169234158 - AluJo SINE Alu -14 298 1 284 298 44 89 chr6 20045778 20045936 -169233618 - MIR SINE MIR -79 183 33 333 0 0 0 chr6 20046345 20046382 -169233172 + (TG)n Simple_repeat Simple_repeat 2 38 0 1102 210 13 18 chr6 20046979 20047208 -169232346 - MIR SINE MIR -21 241 14 309 77 0 0 chr6 20048466 20048505 -169231049 + MADE1 DNA Mariner 1 39 -41 21 36 0 0 chr6 20048520 20048548 -169231006 + AT_rich Low_complexity Low_complexity 1 28 0 404 192 346 8 chr6 20048730 20048860 -169230694 + MER5A DNA MER1_type 9 182 -7 249 33 0 0 chr6 20049002 20049032 -169230522 + (TG)n Simple_repeat Simple_repeat 2 31 0 398 287 81 34 chr6 20050648 20050857 -169228697 - MIR SINE MIR -37 225 7 1429 226 134 53 chr6 20051345 20051778 -169227776 + MLT2B1 LTR ERVL 1 468 -52 2380 178 11 104 chr6 20051783 20052351 -169227203 + MLT2B2 LTR ERVL 1 515 0 804 153 217 26 chr6 20052911 20053100 -169226454 - L1MB5 LINE L1 -14 6160 5936 13730 165 33 13 chr6 20053261 20057025 -169222529 - L1MA6 LINE L1 -9 6291 2448 1852 208 6 6 chr6 20058105 20058470 -169221084 - MLT1A1 LTR MaLR 0 365 1 313 197 15 15 chr6 20058932 20058998 -169220556 - L3 LINE CR1 -683 894 829 219 69 0 0 chr6 20059190 20059219 -169220335 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 1228 177 146 16 chr6 20059229 20059483 -169220071 - AluJo SINE Alu -15 287 1 261 0 0 0 chr6 20063224 20063253 -169216301 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3236 85 32 21 chr6 20063258 20063730 -169215824 - L1PA11 LINE L1 -8 6166 5690 1758 166 42 86 chr6 20065870 20066303 -169213251 + MLT2D LTR ERVL 1 414 0 287 314 33 33 chr6 20066308 20066429 -169213125 - MIR3 SINE MIR -19 189 69 1277 175 17 115 chr6 20067173 20067590 -169211964 - L1MC4 LINE L1 0 8042 7667 204 206 9 84 chr6 20068031 20068138 -169211416 + T-rich Low_complexity Low_complexity 3 101 0 818 274 86 57 chr6 20068165 20068854 -169210700 - HAL1 LINE L1 -170 2337 1629 577 190 0 0 chr6 20068840 20068940 -169210614 + L1P4 LINE L1 2613 2712 -4137 * 2272 154 26 0 chr6 20068944 20069333 -169210221 + MER57A LTR ERV1 1 399 -4 15261 125 66 40 chr6 20069342 20071460 -169208094 + MER57A-int LTR ERV1 1 2063 -5474 322 250 0 0 chr6 20071460 20071524 -169208030 + AluJ/FRAM SINE Alu 232 295 -7 2116 116 3 13 chr6 20071526 20071829 -169207725 + AluSx SINE Alu 1 300 -12 15261 125 66 40 chr6 20071829 20072175 -169207379 + MER57A-int LTR ERV1 2063 2596 -4941 * 28828 105 50 34 chr6 20072168 20076751 -169202803 + MER57A-int LTR ERV1 2874 7531 -6 2226 178 10 0 chr6 20076756 20077155 -169202399 + MER57A LTR ERV1 1 403 0 12888 210 22 16 chr6 20077155 20078256 -169201298 + L1P4 LINE L1 2713 3806 -3062 222 59 20 39 chr6 20078256 20078307 -169201247 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 12888 210 22 16 chr6 20078307 20078886 -169200668 + L1P4 LINE L1 3806 4380 -2488 2097 106 4 0 chr6 20078886 20079159 -169200395 + AluSp SINE Alu 17 290 -23 12888 210 22 16 chr6 20079159 20081004 -169198550 + L1P4 LINE L1 4380 6253 -615 367 111 0 0 chr6 20081003 20081057 -169198497 + L1P4 LINE L1 5497 5550 -611 * 3964 156 1 10 chr6 20081058 20081731 -169197823 + L1PA15 LINE L1 5499 6165 0 214 364 10 20 chr6 20082124 20082223 -169197331 + MIR SINE MIR 53 150 -112 210 71 0 0 chr6 20082302 20082330 -169197224 + (TTA)n Simple_repeat Simple_repeat 1 28 0 323 230 64 79 chr6 20082550 20082847 -169196707 - L1MEc LINE L1 -3771 2375 2110 674 34 23 0 chr6 20083172 20083260 -169196294 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 533 319 26 35 chr6 20083344 20083576 -169195978 + L3 LINE CR1 457 686 -891 225 395 22 0 chr6 20084163 20084297 -169195257 + L3 LINE CR1 1110 1246 -331 21 36 0 0 chr6 20084654 20084682 -169194872 + AT_rich Low_complexity Low_complexity 1 28 0 185 258 17 150 chr6 20084759 20084879 -169194675 + L3 LINE CR1 1461 1564 -13 795 273 62 72 chr6 20085339 20085940 -169193614 + L1M4 LINE L1 2861 3455 -2691 22 0 0 0 chr6 20086001 20086023 -169193531 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 20086047 20086076 -169193478 + AT_rich Low_complexity Low_complexity 1 29 0 2111 103 0 0 chr6 20086243 20086553 -169193001 + AluSx SINE Alu 1 310 0 303 164 0 0 chr6 20086615 20086670 -169192884 + LTR19B LTR ERV1 526 580 0 452 328 129 38 chr6 20086696 20087276 -169192278 + L1M4 LINE L1 3795 4427 -1719 1815 142 22 0 chr6 20087431 20087748 -169191806 + L1MA10 LINE L1 5320 5643 -525 1674 142 48 21 chr6 20087748 20088079 -169191475 + L1MA10 LINE L1 5986 6331 -3 332 200 11 0 chr6 20088110 20088200 -169191354 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1847 170 17 0 chr6 20088202 20088490 -169191064 - AluJo SINE Alu -19 293 1 22 70 0 0 chr6 20088630 20088673 -169190881 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr6 20089194 20089227 -169190327 + AT_rich Low_complexity Low_complexity 1 33 0 207 164 60 15 chr6 20089746 20089813 -169189741 + (TA)n Simple_repeat Simple_repeat 1 70 0 1683 221 68 38 chr6 20090027 20090188 -169189366 + MER74B LTR ERVL 1 156 -466 2089 122 10 3 chr6 20090188 20090483 -169189071 + AluSg SINE Alu 1 297 -13 1683 221 68 38 chr6 20090483 20090850 -169188704 + MER74B LTR ERVL 156 545 -77 252 219 48 68 chr6 20090999 20091145 -169188409 + L1ME4a LINE L1 5945 6087 -34 1783 230 34 50 chr6 20092783 20093279 -169186275 - LTR40a LTR ERVL 0 519 32 331 155 70 0 chr6 20093279 20093350 -169186204 - LTR40a LTR ERVL -443 76 1 1323 211 46 38 chr6 20093576 20094106 -169185448 + MLT1E3 LTR MaLR 70 624 0 426 319 99 14 chr6 20094276 20094489 -169185065 - MIR SINE MIR 0 262 32 2630 46 0 0 chr6 20094494 20094800 -169184754 - AluY SINE Alu -5 306 1 946 256 78 25 chr6 20094912 20095233 -169184321 + MLT1I LTR MaLR 64 401 -8 229 386 18 9 chr6 20095307 20095421 -169184133 + L2 LINE L2 2849 2963 -309 665 245 27 33 chr6 20095433 20095617 -169183937 + MIR SINE MIR 7 189 -73 37 39 0 0 chr6 20095617 20095668 -169183886 + AT_rich Low_complexity Low_complexity 1 51 0 315 327 165 40 chr6 20095697 20095945 -169183609 + L2 LINE L2 2993 3271 -1 27 49 0 0 chr6 20097722 20097763 -169181791 + AT_rich Low_complexity Low_complexity 1 41 0 278 322 11 23 chr6 20098235 20098412 -169181142 + T-rich Low_complexity Low_complexity 4 178 0 333 0 0 0 chr6 20098484 20098521 -169181033 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 435 38 0 0 chr6 20098520 20098573 -169180981 + (TC)n Simple_repeat Simple_repeat 1 53 0 195 42 0 0 chr6 20098572 20098596 -169180958 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 202 277 0 75 chr6 20099187 20099281 -169180273 + MIR SINE MIR 54 140 -68 246 333 49 10 chr6 20100715 20100817 -169178737 - MIR3 SINE MIR -11 197 92 797 162 18 54 chr6 20101325 20101492 -169178062 + MER5A DNA MER1_type 28 188 -1 2483 74 151 5 chr6 20103056 20103447 -169176107 - LTR7 LTR ERV1 -2 448 1 2268 96 48 13 chr6 20103447 20103824 -169175730 - HERVH LTR ERV1 0 7713 7324 1285 139 19 0 chr6 20103824 20104040 -169175514 - HERVH LTR ERV1 -1894 5819 5600 4136 115 44 0 chr6 20104041 20104675 -169174879 - HERVH LTR ERV1 -2564 5149 4488 3380 86 4 6 chr6 20104677 20105180 -169174374 - HERVH LTR ERV1 -3720 3993 3492 854 142 20 0 chr6 20105170 20105318 -169174236 - HERVH LTR ERV1 -4423 3290 3140 * 18818 92 10 40 chr6 20105312 20108390 -169171164 - HERVH LTR ERV1 -4726 2987 1 2488 77 151 5 chr6 20108392 20108783 -169170771 - LTR7 LTR ERV1 -2 448 1 476 353 15 34 chr6 20109054 20109258 -169170296 + MIR SINE MIR 2 201 -61 279 325 25 0 chr6 20109356 20109436 -169170118 + L2 LINE L2 3186 3267 -5 3381 170 13 42 chr6 20109934 20110688 -169168866 - L1MB3 LINE L1 -2 6181 5450 1430 218 50 3 chr6 20110724 20111027 -169168527 + MLT1A1 LTR MaLR 49 365 0 231 152 0 0 chr6 20111072 20111118 -169168436 + CT-rich Low_complexity Low_complexity 4 49 0 3049 240 158 8 chr6 20111407 20112461 -169167093 + L1MC4 LINE L1 6459 7670 -372 333 0 0 0 chr6 20112506 20112543 -169167011 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2159 120 0 0 chr6 20112546 20112829 -169166725 - AluSx SINE Alu -29 283 1 1124 221 8 40 chr6 20112842 20113007 -169166547 - AluJb SINE Alu -18 294 138 2171 110 10 0 chr6 20113007 20113299 -169166255 - AluSx SINE Alu -17 295 1 1124 221 8 40 chr6 20113299 20113386 -169166168 - AluJb SINE Alu -174 138 50 447 257 0 0 chr6 20113441 20113554 -169166000 + L1MC4 LINE L1 7787 7899 -143 2136 190 42 6 chr6 20113829 20114324 -169165230 + L1MD3 LINE L1 7473 7985 -10 440 340 68 38 chr6 20115218 20115483 -169164071 + L1MC/D LINE L1 5512 5784 -2024 1238 182 104 17 chr6 20115553 20115850 -169163704 + MER33 DNA MER1_type 1 323 -1 991 301 68 39 chr6 20116824 20117253 -169162301 - L2 LINE L2 -1 3312 2866 1745 172 7 13 chr6 20117253 20117555 -169161999 + AluJb SINE Alu 1 300 -12 991 301 68 39 chr6 20117555 20117607 -169161947 - L2 LINE L2 -447 2866 2817 412 99 28 0 chr6 20117608 20117679 -169161875 + GA-rich Low_complexity Low_complexity 4 76 0 2093 138 0 3 chr6 20117679 20117991 -169161563 + AluSx SINE Alu 1 311 -1 574 319 168 22 chr6 20118004 20118408 -169161146 - L2 LINE L2 -445 2869 2407 2312 237 41 12 chr6 20118411 20119064 -169160490 + L1ME1 LINE L1 5486 6157 -9 2443 70 0 0 chr6 20119064 20119362 -169160192 - AluY SINE Alu -13 298 1 886 291 38 50 chr6 20119377 20119820 -169159734 - L2 LINE L2 -1573 1741 1304 3218 95 59 6 chr6 20119820 20120293 -169159261 + Charlie3 DNA MER1_type 1 498 -2212 * 3302 79 8 19 chr6 20120289 20120759 -169158795 + Charlie3 DNA MER1_type 2242 2706 -4 621 272 133 5 chr6 20120760 20120955 -169158599 - L2 LINE L2 -2004 1310 1091 359 250 0 0 chr6 20121167 20121255 -169158299 - MER63 DNA MER1_type 0 1060 973 * 385 164 0 0 chr6 20121253 20121314 -169158240 - MER63 DNA MER1_type -317 743 683 587 318 99 50 chr6 20121976 20122922 -169156632 + L2 LINE L2 2315 3313 0 341 256 128 32 chr6 20123038 20123194 -169156360 - MIR3 SINE MIR -17 191 21 268 240 144 56 chr6 20123631 20123756 -169155798 + MIR SINE MIR 121 256 -6 247 71 48 0 chr6 20124164 20124206 -169155348 + MER53 DNA DNA 1 44 -145 2385 84 0 13 chr6 20124266 20124574 -169154980 + AluSc SINE Alu 6 309 0 1750 214 84 7 chr6 20124716 20125146 -169154408 - MLT1C LTR MaLR -4 463 1 1580 191 50 3 chr6 20125796 20126078 -169153476 - AluJb SINE Alu -17 295 1 2038 143 13 3 chr6 20126587 20126887 -169152667 + AluJb SINE Alu 1 303 -9 353 280 83 15 chr6 20127825 20127957 -169151597 - L1ME4a LINE L1 -25 6096 5956 517 333 60 32 chr6 20128061 20128310 -169151244 + MIR SINE MIR 5 260 -2 631 314 82 18 chr6 20128310 20128651 -169150903 - L1ME4a LINE L1 -265 5856 5494 225 0 0 0 chr6 20128654 20128679 -169150875 + (TG)n Simple_repeat Simple_repeat 2 26 0 507 207 129 159 chr6 20129099 20129340 -169150214 + MLT1H1 LTR MaLR 112 335 -220 2030 131 0 0 chr6 20129340 20129656 -169149898 + AluSx SINE Alu 1 316 0 507 207 129 159 chr6 20129656 20129871 -169149683 + MLT1H1 LTR MaLR 335 555 0 2765 299 70 24 chr6 20132488 20133941 -169145613 + L1MEc LINE L1 35 1554 -4842 2444 76 0 0 chr6 20134071 20134374 -169145180 - AluY SINE Alu -8 303 1 2744 148 42 18 chr6 20134382 20134888 -169144666 - L1MC1 LINE L1 0 6333 5816 1021 182 5 5 chr6 20134973 20134986 -169144568 - L1MC1 LINE L1 0 6333 6321 975 106 11 17 chr6 20134986 20135165 -169144389 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 1021 182 5 5 chr6 20135165 20135343 -169144211 - L1MC1 LINE L1 -11 6322 6142 252 278 74 36 chr6 20135344 20135653 -169143901 - L1MEd LINE L1 -3704 2425 2105 1042 284 116 35 chr6 20136448 20137157 -169142397 - L1MEd LINE L1 -4862 1257 492 234 256 233 57 chr6 20137363 20137539 -169142015 - L1MEd LINE L1 -5857 262 56 197 301 140 29 chr6 20137757 20137893 -169141661 + L3 LINE CR1 295 445 -1132 213 353 0 0 chr6 20137911 20138013 -169141541 + L3 LINE CR1 387 488 -1089 519 266 161 14 chr6 20138016 20138234 -169141320 + LTR16C LTR ERVL 1 250 -241 611 346 123 48 chr6 20138389 20138952 -169140602 + L3 LINE CR1 486 1120 -457 5206 124 22 15 chr6 20138952 20139962 -169139592 - L1PA16 LINE L1 -10 6156 5128 611 346 123 48 chr6 20139962 20140149 -169139405 + L3 LINE CR1 1120 1292 -285 340 291 0 0 chr6 20140173 20140252 -169139302 + L2 LINE L2 3193 3271 -1 397 282 60 0 chr6 20141524 20141641 -169137913 + MIR3 SINE MIR 83 206 -2 204 44 0 67 chr6 20144018 20144063 -169135491 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2021 160 38 24 chr6 20144515 20144939 -169134615 - MSTB1 LTR MaLR -2 430 1 971 105 29 0 chr6 20145069 20145241 -169134313 + CT-rich Low_complexity Low_complexity 3 179 0 1016 145 0 6 chr6 20145256 20145435 -169134119 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 270 71 18 36 chr6 20145442 20145498 -169134056 + (TTCCC)n Simple_repeat Simple_repeat 2 56 0 1255 227 58 7 chr6 20145502 20145793 -169133761 - AluJo SINE Alu -6 306 1 396 0 0 0 chr6 20146955 20146999 -169132555 + (GA)n Simple_repeat Simple_repeat 1 44 0 386 283 128 46 chr6 20148789 20149093 -169130461 - L1M4 LINE L1 -2439 3707 3379 1904 269 181 25 chr6 20149256 20150332 -169129222 - L2 LINE L2 -1519 1795 552 10306 221 56 10 chr6 20151013 20152953 -169126601 - L1MC1 LINE L1 0 7128 5279 198 0 0 0 chr6 20152953 20152975 -169126579 + (TTG)n Simple_repeat Simple_repeat 3 24 0 10306 221 56 10 chr6 20152975 20154911 -169124643 - L1MC1 LINE L1 -1849 5279 3072 343 279 85 95 chr6 20154952 20155257 -169124297 - HAL1 LINE L1 -37 2470 2169 242 328 49 16 chr6 20155501 20155623 -169123931 + L2 LINE L2 897 1022 -2292 339 146 0 0 chr6 20155627 20155682 -169123872 - Alu SINE Alu -3 298 244 301 139 120 148 chr6 20155678 20155723 -169123831 - MER44D DNA MER2_type -1914 573 528 * 459 35 0 0 chr6 20155723 20155780 -169123774 + (CA)n Simple_repeat Simple_repeat 1 57 0 301 139 120 148 chr6 20155780 20155842 -169123712 - MER44D DNA MER2_type -1959 528 469 282 203 89 0 chr6 20155845 20155924 -169123630 - L1MC4 LINE L1 -1344 6698 6613 311 277 0 17 chr6 20155927 20156046 -169123508 + (TA)n Simple_repeat Simple_repeat 1 117 0 2295 187 71 2 chr6 20156046 20156469 -169123085 - MER44D DNA MER2_type -98 507 1 312 292 23 23 chr6 20156511 20156682 -169122872 - L1MC1 LINE L1 -6217 206 36 1491 239 98 21 chr6 20156924 20157396 -169122158 - L1ME1 LINE L1 -20 6146 5639 359 291 48 96 chr6 20157413 20157705 -169121849 - HAL1 LINE L1 -1421 1086 809 862 173 25 0 chr6 20157712 20157874 -169121680 + L1MA7 LINE L1 5442 5607 -705 1630 143 27 10 chr6 20157912 20158212 -169121342 + L1MA7 LINE L1 5982 6286 -5 556 180 27 0 chr6 20158218 20158329 -169121225 + L1MA9 LINE L1 6163 6276 -36 190 312 22 11 chr6 20158712 20158839 -169120715 - MER5B DNA MER1_type -10 179 3 191 367 0 0 chr6 20160025 20160115 -169119439 + MER5A DNA MER1_type 90 179 -10 212 353 71 40 chr6 20160456 20160746 -169118808 - L2 LINE L2 -18 3254 2883 522 339 139 50 chr6 20160809 20162001 -169117553 - L2 LINE L2 -505 2809 1511 1154 246 121 21 chr6 20163440 20164225 -169115329 - L1MCa LINE L1 -3519 2907 2087 466 245 126 53 chr6 20164232 20164639 -169114915 - L1MCa LINE L1 -4889 1546 924 1611 196 0 11 chr6 20164930 20165215 -169114339 + AluJb SINE Alu 1 282 -30 1106 185 28 5 chr6 20167512 20167723 -169111831 + AluJo SINE Alu 87 302 -10 23 54 0 0 chr6 20167786 20167823 -169111731 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 20168342 20168365 -169111189 + AT_rich Low_complexity Low_complexity 1 23 0 337 325 16 32 chr6 20168996 20169119 -169110435 - MER5A DNA MER1_type 0 189 69 612 232 13 2 chr6 20169938 20170097 -169109457 + L1ME3 LINE L1 5856 6013 -157 839 273 31 4 chr6 20170469 20170725 -169108829 - L1ME3 LINE L1 -6 6156 5894 324 339 134 13 chr6 20170772 20171011 -169108543 - HAL1 LINE L1 -2001 506 239 254 385 0 10 chr6 20171095 20171199 -169108355 + MIR3 SINE MIR 15 117 -91 219 220 169 17 chr6 20171267 20171326 -169108228 - MIR SINE MIR -104 104 37 1560 95 63 130 chr6 20171689 20172036 -169107518 - L1MA3 LINE L1 -1 6304 5981 886 251 0 0 chr6 20172035 20172222 -169107332 + MST-int LTR MaLR 746 932 -719 * 1177 141 0 5 chr6 20172225 20172410 -169107144 + MSTA LTR MaLR 245 428 0 206 282 188 0 chr6 20172493 20172578 -169106976 - L3 LINE CR1 -85 1492 1392 1706 159 17 17 chr6 20173483 20173784 -169105770 - AluSq SINE Alu -12 301 1 1091 160 63 93 chr6 20173882 20174214 -169105340 - MER33 DNA MER1_type -2 322 1 195 311 40 14 chr6 20175015 20175089 -169104465 - MIR3 SINE MIR -27 181 106 773 245 58 5 chr6 20175422 20175673 -169103881 + L2 LINE L2 2764 3022 -291 462 114 0 0 chr6 20176188 20176258 -169103296 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr6 20176752 20176773 -169102781 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 20176824 20176874 -169102680 + AT_rich Low_complexity Low_complexity 1 50 0 502 124 31 0 chr6 20177779 20177876 -169101678 + GA-rich Low_complexity Low_complexity 3 102 0 460 279 16 14 chr6 20177905 20178078 -169101476 + L1ME2 LINE L1 5992 6166 0 478 222 0 0 chr6 20178149 20178248 -169101306 + FLAM_A SINE Alu 44 142 0 180 176 0 0 chr6 20178305 20178339 -169101215 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 468 203 80 11 chr6 20178437 20178624 -169100930 + L1ME2 LINE L1 4317 4516 -1630 * 1793 241 65 46 chr6 20178595 20179308 -169100246 + L1ME2 LINE L1 5366 6091 -73 826 311 109 45 chr6 20179327 20180201 -169099353 + L2 LINE L2 2358 3313 0 348 261 176 29 chr6 20180266 20180607 -169098947 - L1ME4a LINE L1 -4 6117 5727 431 216 86 35 chr6 20180607 20180723 -169098831 + MIR SINE MIR 127 248 -14 361 153 222 0 chr6 20181845 20181917 -169097637 - MER3 DNA MER1_type -108 101 14 33 43 0 0 chr6 20182259 20182306 -169097248 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr6 20183094 20183135 -169096419 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 229 92 37 chr6 20183561 20183779 -169095775 - L1MC5 LINE L1 -36 7925 7696 425 233 111 33 chr6 20183792 20183972 -169095582 + L1MC5 LINE L1 7325 7518 -443 282 64 0 43 chr6 20184004 20184051 -169095503 + L1MC5 LINE L1 7603 7647 -314 264 59 0 0 chr6 20184298 20184332 -169095222 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 721 235 105 0 chr6 20185213 20185375 -169094179 - MER58A DNA MER1_type -35 189 11 2300 107 3 0 chr6 20185500 20185810 -169093744 - AluSp SINE Alu -2 311 1 277 217 0 0 chr6 20185826 20185872 -169093682 - L2 LINE L2 -27 3245 3200 182 338 14 0 chr6 20186242 20186313 -169093241 - L2 LINE L2 -527 2787 2716 1527 268 42 28 chr6 20187950 20188421 -169091133 - MER45C DNA AcHobo 0 953 476 946 213 99 116 chr6 20188422 20188855 -169090699 + LTR16A1 LTR ERVL 32 457 0 346 326 70 35 chr6 20188871 20189043 -169090511 - L2 LINE L2 -213 3100 2923 1774 228 45 45 chr6 20189085 20189554 -169090000 + MLT1D LTR MaLR 37 505 0 2619 277 106 25 chr6 20189554 20189603 -169089951 - L2 LINE L2 -378 2936 2892 2541 94 3 25 chr6 20189603 20189966 -169089588 - THE1A LTR MaLR 0 355 1 2619 277 106 25 chr6 20189966 20190994 -169088560 - L2 LINE L2 -422 2892 1772 1775 168 20 0 chr6 20190994 20191298 -169088256 - MLT2D LTR ERVL -104 310 1 35 24 0 0 chr6 20191321 20191363 -169088191 + AT_rich Low_complexity Low_complexity 1 42 0 6903 22 1 1 chr6 20191370 20192207 -169087347 - L1PA3 LINE L1 0 6155 5333 226 245 0 0 chr6 20192615 20192668 -169086886 + MLT1K LTR MaLR 524 576 -12 780 265 60 95 chr6 20192776 20193377 -169086177 + MLT1G1 LTR MaLR 16 595 0 910 170 116 76 chr6 20193861 20194151 -169085403 - L1M4 LINE L1 -650 5524 5216 515 292 119 31 chr6 20195019 20195245 -169084309 - L3 LINE CR1 -6 1571 1326 2159 87 3 7 chr6 20195555 20195842 -169083712 - AluSc SINE Alu 0 309 24 364 274 118 0 chr6 20197331 20197433 -169082121 - L2 LINE L2 0 3272 3159 447 238 30 0 chr6 20198104 20198205 -169081349 + L2 LINE L2 3169 3272 0 663 0 0 0 chr6 20198422 20198494 -169081060 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 856 150 232 36 chr6 20198511 20198731 -169080823 + AluJb SINE Alu 37 299 -13 1624 185 73 15 chr6 20198945 20199274 -169080280 + MER7A DNA MER2_type 1 346 0 338 325 8 15 chr6 20199872 20200003 -169079551 + MIR SINE MIR 31 159 -65 1380 207 51 85 chr6 20200012 20200485 -169079069 + MLT1C LTR MaLR 1 457 -10 225 214 0 0 chr6 20201314 20201356 -169078198 + (TA)n Simple_repeat Simple_repeat 1 42 0 493 288 68 18 chr6 20201459 20201622 -169077932 - MIR3 SINE MIR -23 185 15 283 313 0 0 chr6 20201666 20201746 -169077808 + MIR SINE MIR 73 152 -110 256 376 66 55 chr6 20201862 20202133 -169077421 + L2 LINE L2 2997 3270 -2 2478 59 3 0 chr6 20203453 20203759 -169075795 - AluY SINE Alu -4 307 1 32 0 0 0 chr6 20206271 20206303 -169073251 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 20206355 20206376 -169073178 + AT_rich Low_complexity Low_complexity 1 21 0 341 332 53 16 chr6 20206397 20206587 -169072967 + MIR3 SINE MIR 11 207 -1 875 204 36 45 chr6 20208965 20209186 -169070368 - MER20 DNA MER1_type 0 219 1 1198 50 29 19 chr6 20209980 20210418 -169069136 + (TTTC)n Simple_repeat Simple_repeat 1 616 0 261 0 0 0 chr6 20210418 20210447 -169069107 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2141 89 4 7 chr6 20210697 20210978 -169068576 + AluSp SINE Alu 1 280 -33 417 20 0 0 chr6 20210980 20211030 -169068524 + (CA)n Simple_repeat Simple_repeat 1 50 0 3059 214 39 55 chr6 20211802 20212731 -169066823 - L1MC4 LINE L1 0 8042 7129 871 237 43 91 chr6 20212732 20213024 -169066530 + L1MC4 LINE L1 6752 7028 -967 2403 98 0 0 chr6 20213024 20213351 -169066203 + L1PA11 LINE L1 5846 6172 -2 871 237 43 91 chr6 20213351 20213387 -169066167 + L1MC4 LINE L1 7028 7064 -931 227 20 61 41 chr6 20213390 20213439 -169066115 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 843 244 26 8 chr6 20213958 20214192 -169065362 - Zaphod DNA AcHobo -46 3985 3748 500 288 11 37 chr6 20214190 20214381 -169065173 - LTR16C LTR ERVL -14 477 292 * 22 70 0 0 chr6 20214798 20214841 -169064713 + AT_rich Low_complexity Low_complexity 1 43 0 336 224 101 41 chr6 20214862 20215130 -169064424 - Zaphod DNA AcHobo -3067 964 681 1847 218 49 14 chr6 20215131 20215576 -169063978 - L1MD3 LINE L1 -44 7951 7491 349 214 0 29 chr6 20215608 20215678 -169063876 - L1MD3 LINE L1 -589 7406 7339 4617 170 20 14 chr6 20215703 20215949 -169063605 - L1PB4 LINE L1 -3 6153 5910 2082 132 26 34 chr6 20215949 20216327 -169063227 - THE1C LTR MaLR 0 375 1 4617 170 20 14 chr6 20216327 20216975 -169062579 - L1PB4 LINE L1 -246 5910 5254 5577 234 35 21 chr6 20217006 20219431 -169060123 - L1PBb LINE L1 -2955 3894 1336 296 287 0 0 chr6 20219421 20219508 -169060046 - L1PBb LINE L1 -5290 1559 1473 * 311 333 19 38 chr6 20219898 20220057 -169059497 - L1PBb LINE L1 -5884 966 811 1101 258 39 9 chr6 20220080 20220413 -169059141 + L1ME LINE L1 5405 5747 -415 505 349 81 14 chr6 20220431 20220801 -169058753 - L2 LINE L2 -786 2528 2134 658 290 43 73 chr6 20220879 20221095 -169058459 - L2 LINE L2 -24 3289 3083 3639 152 36 12 chr6 20221095 20221780 -169057774 - L1MB3 LINE L1 -1 6182 5481 658 290 43 73 chr6 20221780 20221866 -169057688 - L2 LINE L2 -230 3083 2996 375 329 123 47 chr6 20221880 20222398 -169057156 - L2 LINE L2 -1234 2080 1480 2448 144 62 0 chr6 20222398 20222801 -169056753 - MSTA LTR MaLR 0 428 1 375 329 123 47 chr6 20222801 20223069 -169056485 - L2 LINE L2 -1834 1480 1234 1939 157 44 36 chr6 20224562 20224925 -169054629 - MER47A DNA MER2_type 0 366 1 4093 179 55 15 chr6 20225012 20225880 -169053674 - L1MC3 LINE L1 0 7785 6857 2601 142 12 23 chr6 20225880 20226311 -169053243 + MSTB LTR MaLR 1 426 0 4093 179 55 15 chr6 20226311 20226389 -169053165 - L1MC3 LINE L1 -928 6857 6784 1479 168 26 16 chr6 20226541 20226844 -169052710 + L1MC1 LINE L1 6010 6315 -18 954 215 23 27 chr6 20228176 20228395 -169051159 - MER20 DNA MER1_type -1 218 1 31 26 0 0 chr6 20228783 20228821 -169050733 + AT_rich Low_complexity Low_complexity 1 38 0 749 231 193 6 chr6 20228882 20229198 -169050356 - L1M4 LINE L1 -539 5579 5205 1668 161 77 9 chr6 20229203 20229539 -169050015 - L1MB2 LINE L1 -11 6160 5802 13166 182 10 8 chr6 20229539 20230190 -169049364 + L1PB1 LINE L1 2451 3100 -3051 2448 70 3 0 chr6 20230190 20230491 -169049063 + AluY SINE Alu 1 302 -9 13166 182 10 8 chr6 20230491 20231802 -169047752 + L1PB1 LINE L1 3100 4408 -1743 369 0 0 0 chr6 20231802 20231843 -169047711 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 13166 182 10 8 chr6 20231843 20232419 -169047135 + L1PB1 LINE L1 4408 4982 -1169 2317 112 0 0 chr6 20232419 20232723 -169046831 + AluSc SINE Alu 1 304 -5 13166 182 10 8 chr6 20232723 20233882 -169045672 + L1PB1 LINE L1 4982 6151 0 21 71 0 0 chr6 20233882 20233924 -169045630 + AT_rich Low_complexity Low_complexity 1 42 0 1444 174 15 15 chr6 20233928 20234198 -169045356 - L1MB2 LINE L1 -370 5813 5544 1072 230 92 25 chr6 20234199 20234357 -169045197 - L1M4 LINE L1 -860 5220 5074 2065 84 7 31 chr6 20234357 20234643 -169044911 - AluY SINE Alu -5 306 28 1072 230 92 25 chr6 20234643 20234919 -169044635 - L1M4 LINE L1 -1006 5074 4757 7526 96 4 20 chr6 20234923 20235998 -169043556 + MER11C LTR ERVK 1 1057 -14 991 33 8 0 chr6 20236024 20236146 -169043408 - HERVK11 LTR ERVK -1522 6431 6309 1361 224 73 19 chr6 20236147 20236625 -169042929 - L1M4 LINE L1 -1325 4755 4252 2477 129 12 37 chr6 20236631 20237131 -169042423 - L1MA8 LINE L1 -2 6289 5823 1527 49 0 0 chr6 20237131 20237316 -169042238 - L1PA3 LINE L1 -3 6152 5968 2477 129 12 37 chr6 20237316 20237549 -169042005 - L1MA8 LINE L1 -468 5823 5586 * 3995 250 105 36 chr6 20237546 20238192 -169041362 - L1M4 LINE L1 -1820 4260 3660 1578 159 0 86 chr6 20238192 20238549 -169041005 - AluSx SINE Alu 0 312 1 3995 250 105 36 chr6 20238549 20239877 -169039677 - L1M4 LINE L1 -2420 3660 2150 714 299 77 22 chr6 20239903 20240539 -169039015 - L1M4 LINE L1 -4048 2032 1362 911 259 101 29 chr6 20240586 20241341 -169038213 - L1ME LINE L1 -4820 1260 465 301 333 30 61 chr6 20242067 20242265 -169037289 - L1ME LINE L1 -5877 193 2 22 35 0 0 chr6 20242353 20242382 -169037172 + AT_rich Low_complexity Low_complexity 1 29 0 180 184 0 0 chr6 20242382 20242431 -169037123 + (CAT)n Simple_repeat Simple_repeat 1 49 0 1293 276 78 18 chr6 20242675 20243294 -169036260 + MER20B DNA MER1_type 64 719 -64 2403 104 97 32 chr6 20243937 20243972 -169035582 + MSTA LTR MaLR 1 32 -396 2661 138 78 6 chr6 20243972 20244449 -169035105 - MER9 LTR ERVK 0 511 1 2403 104 97 32 chr6 20244449 20244815 -169034739 + MSTA LTR MaLR 32 428 0 182 136 23 0 chr6 20246157 20246201 -169033353 + T-rich Low_complexity Low_complexity 2 46 0 776 125 28 23 chr6 20247297 20247473 -169032081 + CT-rich Low_complexity Low_complexity 3 179 0 736 272 60 19 chr6 20247779 20248147 -169031407 - L1ME LINE L1 -436 5734 5352 6190 149 77 15 chr6 20248260 20249410 -169030144 + Tigger3b DNA MER2_type 2 1222 -9 260 158 18 0 chr6 20249457 20249514 -169030040 + CT-rich Low_complexity Low_complexity 3 60 0 254 264 80 8 chr6 20249566 20249691 -169029863 - L1ME LINE L1 -2074 4072 3939 2598 102 27 22 chr6 20249691 20250093 -169029461 + MLT2A1 LTR ERVL 1 404 -40 729 74 0 80 chr6 20250098 20250963 -169028591 + (TA)n Simple_repeat Simple_repeat 1 795 0 239 97 28 28 chr6 20251013 20251085 -169028469 + (TA)n Simple_repeat Simple_repeat 2 73 0 372 94 0 0 chr6 20251110 20251163 -169028391 + MLT2A1 LTR ERVL 392 444 0 475 304 105 25 chr6 20251247 20251346 -169028208 - L1ME LINE L1 -639 5525 5435 2151 131 0 0 chr6 20251346 20251651 -169027903 - AluSq SINE Alu -8 305 1 475 304 105 25 chr6 20251651 20252430 -169027124 - L1ME LINE L1 -729 5435 4565 198 0 0 0 chr6 20252701 20252723 -169026831 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 432 266 128 35 chr6 20252742 20252968 -169026586 + L1MC4a LINE L1 1456 1702 -4840 893 297 111 6 chr6 20252982 20253590 -169025964 + L1MC4a LINE L1 4214 4899 -1745 304 287 84 49 chr6 20253598 20253741 -169025813 + L1MC4a LINE L1 6217 6364 -1942 2337 147 76 0 chr6 20253826 20254220 -169025334 + MSTA LTR MaLR 1 424 -4 306 329 204 0 chr6 20254760 20254897 -169024657 - MER5A DNA MER1_type -21 168 4 1032 219 71 115 chr6 20254932 20255392 -169024162 - MER66A LTR ERV1 -10 520 96 982 199 0 0 chr6 20256655 20256811 -169022743 - FAM SINE Alu -19 156 1 252 376 43 0 chr6 20257524 20257686 -169021868 + MER117 DNA MER1_type 7 175 -22 3497 141 6 0 chr6 20257750 20258274 -169021280 + MER1A DNA MER1_type 1 527 0 800 163 0 0 chr6 20258304 20258427 -169021127 + FLAM_C SINE Alu 1 123 -20 234 151 38 0 chr6 20258427 20258480 -169021074 + (TA)n Simple_repeat Simple_repeat 2 56 0 713 183 7 14 chr6 20258492 20258634 -169020920 + AluJb SINE Alu 142 282 -30 411 312 89 32 chr6 20259059 20259306 -169020248 + MIR SINE MIR 2 262 0 280 295 0 71 chr6 20259462 20259574 -169019980 + MER5A DNA MER1_type 46 149 -40 262 181 14 14 chr6 20260096 20260168 -169019386 + CT-rich Low_complexity Low_complexity 5 76 0 2043 126 36 0 chr6 20260172 20260474 -169019080 - AluSq SINE Alu 0 313 1 1940 136 61 0 chr6 20261187 20261481 -169018073 - AluSx SINE Alu 0 312 1 360 325 70 24 chr6 20261585 20261883 -169017671 + L1ME4a LINE L1 5265 5576 -2232 330 143 0 0 chr6 20262830 20262893 -169016661 + (GA)n Simple_repeat Simple_repeat 2 64 0 23 68 0 0 chr6 20262977 20263021 -169016533 + AT_rich Low_complexity Low_complexity 1 44 0 1171 200 23 111 chr6 20263454 20263849 -169015705 - MLT1A1 LTR MaLR -3 362 3 264 273 119 6 chr6 20263877 20264053 -169015501 + L1ME4a LINE L1 5758 5953 -168 318 264 50 36 chr6 20264054 20264194 -169015360 + L1ME4a LINE L1 5978 6119 -2 311 270 0 102 chr6 20264222 20264359 -169015195 - MIR SINE MIR -24 238 116 1567 161 0 8 chr6 20264790 20265044 -169014510 - AluJb SINE Alu -15 297 46 408 270 68 55 chr6 20266886 20267049 -169012505 + MER91A DNA MER1_type 1 165 -31 236 298 0 35 chr6 20267052 20267109 -169012445 + MER91A DNA MER1_type 136 190 0 1067 343 64 5 chr6 20267752 20268192 -169011362 + LTR33 LTR ERVL 33 498 -23 3499 69 7 4 chr6 20269810 20270271 -169009283 + L1PA8 LINE L1 5709 6170 -2 342 368 118 35 chr6 20271655 20272003 -169007551 + L2 LINE L2 2841 3217 -55 2080 144 119 16 chr6 20272042 20272430 -169007124 + MSTA LTR MaLR 1 428 0 13485 17 0 0 chr6 20272881 20275229 -169004325 - L1HS LINE L1 -2 6153 3805 1646 30 0 0 chr6 20275226 20275424 -169004130 + L1HS LINE L1 3607 3804 -2342 * 2241 234 36 32 chr6 20276729 20277343 -169002211 - MER77 LTR ERV1 -4 601 79 213 39 0 0 chr6 20277540 20277566 -169001988 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 20277706 20277734 -169001820 + AT_rich Low_complexity Low_complexity 1 28 0 4812 214 73 22 chr6 20278633 20279973 -168999581 + Charlie1a DNA MER1_type 1 1409 -46 231 36 0 0 chr6 20280114 20280142 -168999412 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1414 215 8 4 chr6 20280149 20280409 -168999145 - AluJb SINE Alu -51 261 1 209 222 22 0 chr6 20281241 20281286 -168998268 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 291 71 0 0 chr6 20282082 20282124 -168997430 + (CA)n Simple_repeat Simple_repeat 2 43 0 15497 156 19 9 chr6 20285191 20290352 -168989202 - L1MA3 LINE L1 0 7724 2567 236 333 65 0 chr6 20290560 20290683 -168988871 - L1MC5 LINE L1 -519 7442 7312 3831 23 0 0 chr6 20290901 20291344 -168988210 - L1PA4 LINE L1 -59 6096 5654 416 65 0 0 chr6 20291344 20291405 -168988149 + L1PA3 LINE L1 6094 6155 0 462 36 0 0 chr6 20291780 20291836 -168987718 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 252 213 0 0 chr6 20291972 20292033 -168987521 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 515 43 14 0 chr6 20292063 20292133 -168987421 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1253 165 187 31 chr6 20292746 20293067 -168986487 - MLT1A2 LTR MaLR 0 374 4 679 103 10 0 chr6 20297305 20297402 -168982152 + MSTB1 LTR MaLR 335 432 0 314 235 31 10 chr6 20297495 20297593 -168981961 + MER103 DNA DNA 66 165 -1 290 288 182 24 chr6 20298324 20298494 -168981060 + MIR SINE MIR 45 241 -21 2694 98 3 5 chr6 20298530 20298906 -168980648 + THE1C LTR MaLR 1 375 0 198 0 0 0 chr6 20299516 20299538 -168980016 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 420 55 0 0 chr6 20299537 20299592 -168979962 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 148 19 19 chr6 20299651 20299705 -168979849 + CT-rich Low_complexity Low_complexity 2 55 0 350 272 82 84 chr6 20300907 20301240 -168978314 - MLT1J1 LTR MaLR -71 375 20 298 298 12 0 chr6 20301765 20301849 -168977705 + L1ME LINE L1 5523 5607 -514 393 86 0 0 chr6 20302156 20302214 -168977340 + (T)n Simple_repeat Simple_repeat 1 58 0 2034 103 10 48 chr6 20302293 20302605 -168976949 - AluSq SINE Alu -13 300 1 2137 122 0 0 chr6 20304475 20304778 -168974776 - AluSx SINE Alu -5 307 5 215 343 0 0 chr6 20304923 20304990 -168974564 + L2 LINE L2 3247 3313 0 526 328 15 30 chr6 20305368 20305566 -168973988 - MIR SINE MIR -65 197 3 1246 149 61 105 chr6 20307450 20307745 -168971809 + AluJo SINE Alu 1 282 -30 216 319 112 35 chr6 20308597 20308713 -168970841 - MIR SINE MIR -46 216 92 282 375 65 5 chr6 20308912 20309096 -168970458 - L2 LINE L2 -209 3063 2869 584 286 50 14 chr6 20309096 20309316 -168970238 - MER102b DNA MER1_type -1 340 113 424 209 27 36 chr6 20309502 20309612 -168969942 + MIR3 SINE MIR 77 185 -23 1435 261 38 92 chr6 20309713 20310787 -168968767 + L1MEc LINE L1 2147 3121 -3094 3919 153 24 23 chr6 20310788 20311183 -168968371 - L1 LINE L1 -2242 3904 3506 1324 112 36 83 chr6 20311183 20311376 -168968178 - L1MA2 LINE L1 -1 6303 6125 1839 158 0 20 chr6 20311376 20311680 -168967874 - AluSx SINE Alu -10 302 5 1324 112 36 83 chr6 20311680 20311762 -168967792 - L1MA2 LINE L1 -179 6125 6041 3919 153 24 23 chr6 20311762 20312144 -168967410 - L1 LINE L1 -2640 3506 3126 3510 187 16 50 chr6 20312138 20312925 -168966629 + L1PA15 LINE L1 5400 6160 -5 * 360 0 0 0 chr6 20312947 20312987 -168966567 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 20312988 20313027 -168966527 + (CA)n Simple_repeat Simple_repeat 2 40 0 247 184 0 0 chr6 20313064 20313102 -168966452 + Alu SINE Alu 1 38 -261 523 144 62 0 chr6 20313104 20313201 -168966353 + AluY SINE Alu 207 309 -2 2972 126 13 2 chr6 20313203 20313678 -168965876 + L1MA6 LINE L1 5821 6300 0 1299 268 78 12 chr6 20313711 20314468 -168965086 + L1MC/D LINE L1 4872 5677 -489 447 192 8 128 chr6 20314474 20314599 -168964955 - Tigger3(Golem) DNA MER2_type 0 3029 2920 257 239 127 0 chr6 20314706 20314720 -168964834 - Tigger3(Golem) DNA MER2_type -522 80 69 2168 34 8 0 chr6 20314720 20314987 -168964567 - L1PA4 LINE L1 -3 6152 5884 257 239 127 0 chr6 20314987 20315043 -168964511 - Tigger3(Golem) DNA MER2_type -533 69 1 451 221 71 9 chr6 20315044 20315157 -168964397 + L1MC/D LINE L1 5689 5808 -356 27 0 0 0 chr6 20416026 20416053 -168863501 + AT_rich Low_complexity Low_complexity 1 27 0 2223 133 41 21 chr6 20416182 20416618 -168862936 - LTR7 LTR ERV1 -5 445 1 248 316 164 6 chr6 20416721 20416892 -168862662 + MIR SINE MIR 9 206 -56 194 298 85 0 chr6 20416940 20417034 -168862520 + MIR SINE MIR 154 255 -7 338 320 44 61 chr6 20417822 20418050 -168861504 - L2 LINE L2 -1021 2293 2070 819 168 0 40 chr6 20418505 20418654 -168860900 - FLAM_C SINE Alu 0 143 1 1394 243 75 33 chr6 20418661 20419161 -168860393 - L1MCc LINE L1 -4028 3094 2362 2108 86 4 11 chr6 20419161 20419440 -168860114 - AluSg SINE Alu -16 294 18 1394 243 75 33 chr6 20419440 20419669 -168859885 - L1MCc LINE L1 -4760 2362 2144 537 285 50 26 chr6 20419670 20420171 -168859383 - L1MCc LINE L1 -4889 1534 1130 573 88 0 0 chr6 20421927 20422007 -168857547 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 2212 122 3 6 chr6 20422445 20422757 -168856797 - AluSq SINE Alu -2 311 1 720 156 0 33 chr6 20423572 20423694 -168855860 + FRAM SINE Alu 45 162 -14 248 254 0 0 chr6 20423715 20423778 -168855776 + L1MC/D LINE L1 5837 5899 -1909 2198 132 0 0 chr6 20423998 20424301 -168855253 - AluSx SINE Alu -9 303 1 263 226 0 48 chr6 20424438 20424500 -168855054 - L2 LINE L2 -9 3304 3246 455 288 120 20 chr6 20424605 20424842 -168854712 + MIR SINE MIR 1 262 0 531 222 106 48 chr6 20426849 20427038 -168852516 + MIR SINE MIR 63 262 0 2552 52 0 0 chr6 20427110 20427416 -168852138 - AluY SINE Alu -5 306 1 1545 178 44 30 chr6 20428100 20428398 -168851156 - AluJb SINE Alu -8 304 3 2173 119 9 25 chr6 20428558 20428876 -168850678 - AluSq SINE Alu 0 313 1 308 65 43 0 chr6 20428933 20428979 -168850575 - LTR54 LTR ERV1 -61 449 402 3108 120 29 4 chr6 20429026 20429516 -168850038 - L1PA16 LINE L1 -17 6149 5648 493 278 146 9 chr6 20429516 20429728 -168849826 - L1MC/D LINE L1 -2055 5753 5513 872 291 20 12 chr6 20429829 20430080 -168849474 - MIR SINE MIR -9 253 1 2220 137 12 9 chr6 20430168 20430504 -168849050 + MER1B DNA MER1_type 1 337 0 426 306 89 20 chr6 20430560 20430808 -168848746 - L1MC/D LINE L1 -946 5200 4936 12167 165 12 8 chr6 20431028 20434143 -168845411 - L1PA13 LINE L1 -1 6162 3025 1814 160 17 7 chr6 20434143 20434430 -168845124 - AluJb SINE Alu -20 292 3 12167 165 12 8 chr6 20434430 20435021 -168844533 - L1PA13 LINE L1 -3138 3025 2438 746 110 110 17 chr6 20435281 20435399 -168844155 + FLAM_C SINE Alu 1 129 -4 1042 191 4 52 chr6 20435562 20435792 -168843762 + MER20 DNA MER1_type 1 219 0 791 182 0 0 chr6 20435800 20435921 -168843633 - FLAM_A SINE Alu -12 121 1 2800 13 0 0 chr6 20436722 20437028 -168842526 + AluYa5 SINE Alu 1 306 -5 2838 10 0 0 chr6 20438213 20438523 -168841031 + AluYa5 SINE Alu 1 310 -1 189 268 0 0 chr6 20440104 20440145 -168839409 - L2 LINE L2 -1 3271 3231 346 319 76 19 chr6 20440878 20441035 -168838519 - MIR SINE MIR -8 254 89 595 157 0 0 chr6 20441044 20441146 -168838408 + AluSg/x SINE Alu 207 308 -2 289 338 112 39 chr6 20441343 20441825 -168837729 - L2 LINE L2 -510 2804 2288 2018 151 0 0 chr6 20441884 20442183 -168837371 - AluJb SINE Alu -13 299 1 290 296 117 50 chr6 20442928 20443168 -168836386 - L2 LINE L2 -45 3268 3013 511 238 204 83 chr6 20443315 20443426 -168836128 - L2 LINE L2 -2 3311 3215 198 103 0 0 chr6 20443426 20443455 -168836099 + (TG)n Simple_repeat Simple_repeat 1 29 0 511 238 204 83 chr6 20443455 20443864 -168835690 - L2 LINE L2 -98 3215 2682 2331 82 0 20 chr6 20443864 20444168 -168835386 - AluSg1 SINE Alu -11 298 1 511 238 204 83 chr6 20444168 20444308 -168835246 - L2 LINE L2 -631 2682 2560 442 219 207 39 chr6 20444350 20444606 -168834948 - L2 LINE L2 0 3313 3015 2188 110 13 0 chr6 20445950 20446249 -168833305 + AluSx SINE Alu 1 303 -9 257 250 113 0 chr6 20446580 20446660 -168832894 + MIR SINE MIR 120 208 -54 195 42 0 0 chr6 20446983 20447007 -168832547 + (T)n Simple_repeat Simple_repeat 1 24 0 819 191 0 0 chr6 20447018 20447149 -168832405 + FLAM_A SINE Alu 1 131 -2 2112 132 0 13 chr6 20447653 20447956 -168831598 + AluSx SINE Alu 1 299 -13 448 338 59 34 chr6 20448563 20448800 -168830754 - MIR SINE MIR -8 254 12 1453 193 3 24 chr6 20448886 20449176 -168830378 - AluJo SINE Alu -3 309 26 529 211 0 0 chr6 20449176 20449271 -168830283 - FLAM_A SINE Alu -47 95 1 349 223 90 147 chr6 20449868 20450079 -168829475 + MIR SINE MIR 64 262 0 22 0 0 0 chr6 20450963 20450985 -168828569 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 20451208 20451228 -168828326 + (CACCC)n Simple_repeat Simple_repeat 1 20 0 268 240 27 0 chr6 20451403 20451478 -168828076 + L3b LINE CR1 1124 1200 -383 357 229 110 55 chr6 20451551 20451660 -168827894 + MIR SINE MIR 33 147 -61 231 209 0 0 chr6 20451750 20451793 -168827761 - L2 LINE L2 -4 3309 3267 296 300 127 0 chr6 20451875 20451985 -168827569 + L2 LINE L2 3149 3272 0 1826 146 27 23 chr6 20452325 20452626 -168826928 + AluJo SINE Alu 6 307 -5 291 140 0 0 chr6 20453834 20453884 -168825670 + (T)n Simple_repeat Simple_repeat 1 50 0 1951 168 24 5 chr6 20455048 20455418 -168824136 - L1PB4 LINE L1 0 6156 5780 195 42 0 0 chr6 20455462 20455486 -168824068 + (TG)n Simple_repeat Simple_repeat 2 25 0 3130 115 13 6 chr6 20455489 20456011 -168823543 - L1PB4 LINE L1 -371 5785 5260 2099 160 3 0 chr6 20457225 20457573 -168821981 - AluSx SINE Alu 0 349 1 2349 109 0 0 chr6 20457967 20458271 -168821283 - AluSg SINE Alu -6 304 1 530 301 109 18 chr6 20458396 20458625 -168820929 + MIR SINE MIR 12 261 -1 511 306 124 0 chr6 20460074 20460283 -168819271 - MIR SINE MIR -26 236 2 751 247 30 46 chr6 20461121 20461384 -168818170 - MIR SINE MIR -2 260 2 2127 124 0 0 chr6 20461436 20461744 -168817810 + AluSx SINE Alu 1 308 0 342 317 58 0 chr6 20461952 20462056 -168817498 - L2 LINE L2 -8 3264 3155 209 89 67 0 chr6 20462205 20462250 -168817304 + (TA)n Simple_repeat Simple_repeat 2 49 0 637 262 24 62 chr6 20462367 20462635 -168816919 + MIR SINE MIR 1 259 -3 283 265 59 0 chr6 20463143 20463211 -168816343 + MER91C DNA MER1_type 35 106 -34 347 313 6 38 chr6 20463224 20463384 -168816170 + L2 LINE L2 2828 2982 -290 237 288 106 0 chr6 20463450 20463516 -168816038 + L2 LINE L2 2981 3053 -219 236 226 137 48 chr6 20463690 20463814 -168815740 - HAL1 LINE L1 -78 2429 2295 1968 126 13 33 chr6 20463825 20464126 -168815428 - AluJb SINE Alu -17 295 1 1916 149 41 33 chr6 20464303 20464665 -168814889 + MLT1A1 LTR MaLR 1 365 0 2402 58 6 0 chr6 20465039 20465351 -168814203 - L1PA4 LINE L1 0 6155 5842 478 270 92 126 chr6 20465553 20465781 -168813773 - HAL1 LINE L1 -1011 1496 1262 1048 58 47 6 chr6 20465781 20465952 -168813602 + CT-rich Low_complexity Low_complexity 3 180 0 478 270 92 126 chr6 20465952 20465975 -168813579 - HAL1 LINE L1 -1245 1262 1240 1732 142 25 4 chr6 20465975 20466256 -168813298 - AluSx SINE Alu -25 287 1 478 270 92 126 chr6 20466256 20466711 -168812843 - HAL1 LINE L1 -1267 1240 813 324 0 0 0 chr6 20466998 20467034 -168812520 + (CA)n Simple_repeat Simple_repeat 2 37 0 264 30 0 0 chr6 20467339 20467372 -168812182 + (TG)n Simple_repeat Simple_repeat 1 33 0 759 242 113 17 chr6 20467441 20467672 -168811882 + MIR SINE MIR 10 262 0 199 381 83 32 chr6 20468113 20468391 -168811163 + L3 LINE CR1 1263 1554 -23 392 276 98 37 chr6 20469800 20469963 -168809591 - MIR3 SINE MIR -13 195 23 1127 195 0 19 chr6 20470054 20470269 -168809285 + AluJo SINE Alu 101 311 -1 682 268 63 54 chr6 20571289 20571890 -168707664 + MLT1G1 LTR MaLR 16 590 0 845 170 116 76 chr6 20572374 20572664 -168706890 - L1M4 LINE L1 -650 5524 5216 512 292 119 31 chr6 20573532 20573758 -168705796 - L3 LINE CR1 -6 1571 1326 2180 87 3 7 chr6 20574068 20574355 -168705199 - AluSc SINE Alu 0 309 24 368 274 118 0 chr6 20575844 20575946 -168703608 - L2 LINE L2 0 3272 3159 450 238 30 0 chr6 20576617 20576718 -168702836 + L2 LINE L2 3169 3272 0 669 0 0 0 chr6 20576935 20577007 -168702547 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 876 150 232 36 chr6 20577024 20577244 -168702310 + AluJb SINE Alu 37 299 -13 1606 185 73 15 chr6 20577458 20577787 -168701767 + MER7A DNA MER2_type 1 346 0 334 325 8 15 chr6 20578385 20578516 -168701038 + MIR SINE MIR 31 159 -65 1231 216 42 76 chr6 20578525 20578998 -168700556 + MLT1C LTR MaLR 1 457 -10 225 214 0 0 chr6 20579827 20579869 -168699685 + (TA)n Simple_repeat Simple_repeat 1 42 0 499 288 68 18 chr6 20579972 20580135 -168699419 - MIR3 SINE MIR -23 185 15 281 313 0 0 chr6 20580179 20580259 -168699295 + MIR SINE MIR 73 152 -110 261 376 66 55 chr6 20580375 20580646 -168698908 + L2 LINE L2 2997 3270 -2 2477 59 3 0 chr6 20581966 20582272 -168697282 - AluY SINE Alu -4 307 1 32 0 0 0 chr6 20584784 20584816 -168694738 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 20584868 20584889 -168694665 + AT_rich Low_complexity Low_complexity 1 21 0 347 332 53 16 chr6 20584910 20585100 -168694454 + MIR3 SINE MIR 11 207 -1 862 204 36 45 chr6 20587478 20587699 -168691855 - MER20 DNA MER1_type 0 219 1 1198 50 29 19 chr6 20588493 20588931 -168690623 + (TTTC)n Simple_repeat Simple_repeat 1 616 0 261 0 0 0 chr6 20588931 20588960 -168690594 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2105 89 4 7 chr6 20589210 20589491 -168690063 + AluSp SINE Alu 1 280 -33 417 20 0 0 chr6 20589493 20589543 -168690011 + (CA)n Simple_repeat Simple_repeat 1 50 0 3130 214 39 55 chr6 20590315 20591244 -168688310 - L1MC4 LINE L1 0 8042 7129 881 237 43 91 chr6 20591245 20591537 -168688017 + L1MC4 LINE L1 6752 7028 -967 2384 98 0 0 chr6 20591537 20591864 -168687690 + L1PA11 LINE L1 5846 6172 -2 881 237 43 91 chr6 20591864 20591900 -168687654 + L1MC4 LINE L1 7028 7064 -931 227 20 61 41 chr6 20591903 20591952 -168687602 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 864 244 26 8 chr6 20592471 20592705 -168686849 - Zaphod DNA AcHobo -46 3985 3748 495 288 11 37 chr6 20592703 20592894 -168686660 - LTR16C LTR ERVL -14 477 292 * 22 70 0 0 chr6 20593311 20593354 -168686200 + AT_rich Low_complexity Low_complexity 1 43 0 376 224 101 41 chr6 20593375 20593643 -168685911 - Zaphod DNA AcHobo -3067 964 681 1864 218 49 14 chr6 20593644 20594089 -168685465 - L1MD3 LINE L1 -44 7951 7491 351 214 0 29 chr6 20594121 20594191 -168685363 - L1MD3 LINE L1 -589 7406 7339 4678 169 20 14 chr6 20594216 20594462 -168685092 - L1PB4 LINE L1 -3 6153 5910 2062 132 26 34 chr6 20594462 20594840 -168684714 - THE1C LTR MaLR 0 375 1 4678 169 20 14 chr6 20594840 20595488 -168684066 - L1PB4 LINE L1 -246 5910 5254 5601 240 44 25 chr6 20595519 20598253 -168681301 - L1PBb LINE L1 -2955 3248 355 303 333 19 38 chr6 20598408 20598567 -168680987 - L1PBb LINE L1 -5884 320 165 1123 258 39 9 chr6 20598590 20598923 -168680631 + L1ME LINE L1 5405 5747 -415 508 349 81 14 chr6 20598941 20599311 -168680243 - L2 LINE L2 -786 2528 2134 667 290 43 73 chr6 20599389 20599605 -168679949 - L2 LINE L2 -24 3289 3083 3644 152 36 12 chr6 20599605 20600290 -168679264 - L1MB3 LINE L1 -1 6182 5481 667 290 43 73 chr6 20600290 20600376 -168679178 - L2 LINE L2 -230 3083 2996 387 329 123 47 chr6 20600390 20600908 -168678646 - L2 LINE L2 -1234 2080 1480 2420 144 62 0 chr6 20600908 20601311 -168678243 - MSTA LTR MaLR 0 428 1 387 329 123 47 chr6 20601311 20601579 -168677975 - L2 LINE L2 -1834 1480 1234 1937 157 44 36 chr6 20603072 20603435 -168676119 - MER47A DNA MER2_type 0 366 1 4128 184 55 13 chr6 20603522 20604388 -168675166 - L1MC3 LINE L1 0 7785 6857 2571 142 12 23 chr6 20604388 20604819 -168674735 + MSTB LTR MaLR 1 426 0 4128 184 55 13 chr6 20604819 20604897 -168674657 - L1MC3 LINE L1 -928 6857 6784 1477 168 26 16 chr6 20605049 20605352 -168674202 + L1MC1 LINE L1 6010 6315 -18 943 215 23 27 chr6 20606684 20606903 -168672651 - MER20 DNA MER1_type -1 218 1 31 26 0 0 chr6 20607291 20607329 -168672225 + AT_rich Low_complexity Low_complexity 1 38 0 770 231 193 6 chr6 20607390 20607706 -168671848 - L1M4 LINE L1 -539 5579 5205 1673 161 77 9 chr6 20607711 20608047 -168671507 - L1MB2 LINE L1 -11 6160 5802 13277 183 9 8 chr6 20608047 20608698 -168670856 + L1PB1 LINE L1 2451 3100 -3051 2394 70 3 0 chr6 20608698 20608997 -168670557 + AluY SINE Alu 1 300 -11 13277 183 9 8 chr6 20608997 20610308 -168669246 + L1PB1 LINE L1 3100 4408 -1743 369 0 0 0 chr6 20610308 20610349 -168669205 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 13277 183 9 8 chr6 20610349 20610925 -168668629 + L1PB1 LINE L1 4408 4982 -1169 2291 112 0 0 chr6 20610925 20611229 -168668325 + AluSc SINE Alu 1 304 -5 13277 183 9 8 chr6 20611229 20612388 -168667166 + L1PB1 LINE L1 4982 6151 0 21 71 0 0 chr6 20612388 20612430 -168667124 + AT_rich Low_complexity Low_complexity 1 42 0 1456 174 15 15 chr6 20612434 20612704 -168666850 - L1MB2 LINE L1 -370 5813 5544 1099 230 92 25 chr6 20612705 20612863 -168666691 - L1M4 LINE L1 -860 5220 5074 2039 84 7 31 chr6 20612863 20613149 -168666405 - AluY SINE Alu -5 306 28 1099 230 92 25 chr6 20613149 20613425 -168666129 - L1M4 LINE L1 -1006 5074 4757 7497 96 4 20 chr6 20613429 20614504 -168665050 + MER11C LTR ERVK 1 1057 -14 868 29 0 0 chr6 20614530 20614633 -168664921 - HERVK11 LTR ERVK -1522 6431 6329 4040 221 83 120 chr6 20614633 20615137 -168664417 - L1M4 LINE L1 -1307 4773 4252 2493 138 19 47 chr6 20615137 20615624 -168663930 - L1MA8 LINE L1 -2 6289 5817 4040 221 83 120 chr6 20615624 20615637 -168663917 - L1M4 LINE L1 -1828 4252 4240 1521 49 0 0 chr6 20615637 20615822 -168663732 - L1PA3 LINE L1 -3 6152 5968 4040 221 83 120 chr6 20615822 20616698 -168662856 - L1M4 LINE L1 -1840 4240 3333 1548 159 0 86 chr6 20616698 20617055 -168662499 - AluSx SINE Alu 0 312 1 4040 221 83 120 chr6 20617055 20618383 -168661171 - L1M4 LINE L1 -2747 3333 2150 776 299 77 22 chr6 20618409 20619045 -168660509 - L1M4 LINE L1 -4048 2032 1362 962 259 101 29 chr6 20619092 20619847 -168659707 - L1ME LINE L1 -4820 1260 465 306 333 30 61 chr6 20620573 20620771 -168658783 - L1ME LINE L1 -5877 193 2 22 35 0 0 chr6 20620859 20620888 -168658666 + AT_rich Low_complexity Low_complexity 1 29 0 180 184 0 0 chr6 20620888 20620937 -168658617 + (CAT)n Simple_repeat Simple_repeat 1 49 0 1347 276 78 18 chr6 20621181 20621800 -168657754 + MER20B DNA MER1_type 64 719 -64 2379 104 97 32 chr6 20622443 20622478 -168657076 + MSTA LTR MaLR 1 32 -396 2627 138 78 6 chr6 20622478 20622955 -168656599 - MER9 LTR ERVK 0 511 1 2379 104 97 32 chr6 20622955 20623321 -168656233 + MSTA LTR MaLR 32 428 0 182 136 23 0 chr6 20624663 20624707 -168654847 + T-rich Low_complexity Low_complexity 2 46 0 776 125 28 23 chr6 20625803 20625979 -168653575 + CT-rich Low_complexity Low_complexity 3 179 0 761 272 60 19 chr6 20626285 20626653 -168652901 - L1ME LINE L1 -436 5734 5352 6239 149 77 15 chr6 20626766 20627916 -168651638 + Tigger3b DNA MER2_type 2 1222 -9 260 158 18 0 chr6 20627963 20628020 -168651534 + CT-rich Low_complexity Low_complexity 3 60 0 260 264 80 8 chr6 20628072 20628197 -168651357 - L1ME LINE L1 -2074 4072 3939 2666 99 22 22 chr6 20628197 20628601 -168650953 + MLT2A1 LTR ERVL 1 404 -40 413 71 0 101 chr6 20628606 20628804 -168650750 + (TA)n Simple_repeat Simple_repeat 2 179 0 729 74 0 74 chr6 20628838 20629471 -168650083 + (TA)n Simple_repeat Simple_repeat 1 586 0 239 97 28 28 chr6 20629521 20629593 -168649961 + (TA)n Simple_repeat Simple_repeat 2 73 0 375 94 0 0 chr6 20629618 20629671 -168649883 + MLT2A1 LTR ERVL 392 444 0 546 304 105 25 chr6 20629755 20629854 -168649700 - L1ME LINE L1 -637 5525 5435 2124 131 0 0 chr6 20629854 20630159 -168649395 - AluSq SINE Alu -8 305 1 546 304 105 25 chr6 20630159 20630938 -168648616 - L1ME LINE L1 -727 5435 4565 198 0 0 0 chr6 20631209 20631231 -168648323 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 241 266 128 35 chr6 20631250 20631476 -168648078 + L1MC4a LINE L1 1456 1702 -4840 939 298 101 14 chr6 20631490 20632098 -168647456 + L1MC4a LINE L1 4214 4899 -1745 304 287 84 49 chr6 20632106 20632249 -168647305 + L1MC4a LINE L1 6217 6364 -1942 2314 147 76 0 chr6 20632334 20632728 -168646826 + MSTA LTR MaLR 1 424 -4 303 329 204 0 chr6 20633268 20633405 -168646149 - MER5A DNA MER1_type -21 168 4 1025 232 58 102 chr6 20633440 20633900 -168645654 - MER66A LTR ERV1 -10 520 96 968 199 0 0 chr6 20635163 20635319 -168644235 - FAM SINE Alu -19 156 1 257 376 43 0 chr6 20636032 20636194 -168643360 + MER117 DNA MER1_type 7 175 -22 3497 141 6 0 chr6 20636258 20636782 -168642772 + MER1A DNA MER1_type 1 527 0 800 163 0 0 chr6 20636812 20636935 -168642619 + FLAM_C SINE Alu 1 123 -20 234 151 38 0 chr6 20636935 20636988 -168642566 + (TA)n Simple_repeat Simple_repeat 1 55 0 713 183 7 14 chr6 20637000 20637142 -168642412 + AluJb SINE Alu 142 282 -30 411 312 89 32 chr6 20637567 20637814 -168641740 + MIR SINE MIR 2 262 0 280 295 0 71 chr6 20637970 20638082 -168641472 + MER5A DNA MER1_type 46 149 -40 262 181 14 14 chr6 20638604 20638676 -168640878 + CT-rich Low_complexity Low_complexity 5 76 0 2043 126 36 0 chr6 20638680 20638982 -168640572 - AluSq SINE Alu 0 313 1 1940 136 61 0 chr6 20639695 20639989 -168639565 - AluSx SINE Alu 0 312 1 360 325 70 24 chr6 20640093 20640391 -168639163 + L1ME4a LINE L1 5265 5576 -2232 330 143 0 0 chr6 20641338 20641401 -168638153 + (GA)n Simple_repeat Simple_repeat 2 64 0 23 68 0 0 chr6 20641485 20641529 -168638025 + AT_rich Low_complexity Low_complexity 1 44 0 1171 200 23 111 chr6 20641962 20642357 -168637197 - MLT1A1 LTR MaLR -3 362 3 279 271 113 6 chr6 20642385 20642562 -168636992 + L1ME4a LINE L1 5758 5953 -168 318 264 50 36 chr6 20642563 20642703 -168636851 + L1ME4a LINE L1 5978 6119 -2 311 270 0 102 chr6 20642731 20642868 -168636686 - MIR SINE MIR -24 238 116 1567 161 0 8 chr6 20643299 20643553 -168636001 - AluJb SINE Alu -15 297 46 408 270 68 55 chr6 20645395 20645558 -168633996 + MER91A DNA MER1_type 1 165 -31 236 298 0 35 chr6 20645561 20645618 -168633936 + MER91A DNA MER1_type 136 190 0 1067 343 64 5 chr6 20646261 20646701 -168632853 + LTR33 LTR ERVL 33 498 -23 3499 69 7 4 chr6 20648319 20648780 -168630774 + L1PA8 LINE L1 5709 6170 -2 342 368 118 35 chr6 20650164 20650512 -168629042 + L2 LINE L2 2841 3217 -55 2080 144 119 16 chr6 20650551 20650939 -168628615 + MSTA LTR MaLR 1 428 0 13485 17 0 0 chr6 20651390 20653738 -168625816 - L1HS LINE L1 -2 6153 3805 1646 30 0 0 chr6 20653735 20653933 -168625621 + L1HS LINE L1 3607 3804 -2342 * 2241 234 36 32 chr6 20655238 20655852 -168623702 - MER77 LTR ERV1 -4 601 79 213 39 0 0 chr6 20656049 20656075 -168623479 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 20656215 20656243 -168623311 + AT_rich Low_complexity Low_complexity 1 28 0 4812 214 73 22 chr6 20657141 20658481 -168621073 + Charlie1a DNA MER1_type 1 1409 -46 231 36 0 0 chr6 20658622 20658650 -168620904 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1414 215 8 4 chr6 20658657 20658917 -168620637 - AluJb SINE Alu -51 261 1 209 222 22 0 chr6 20659749 20659794 -168619760 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 291 71 0 0 chr6 20660590 20660632 -168618922 + (CA)n Simple_repeat Simple_repeat 2 43 0 15293 155 20 9 chr6 20663699 20668847 -168610707 - L1MA3 LINE L1 0 7724 2567 228 333 65 0 chr6 20669066 20669189 -168610365 - L1MC5 LINE L1 -519 7442 7312 3851 23 0 0 chr6 20669407 20669850 -168609704 - L1PA4 LINE L1 -59 6096 5654 411 65 0 0 chr6 20669850 20669911 -168609643 + L1PA3 LINE L1 6094 6155 0 462 36 0 0 chr6 20670286 20670342 -168609212 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 252 213 0 0 chr6 20670478 20670539 -168609015 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 515 43 14 0 chr6 20670569 20670639 -168608915 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1270 165 187 31 chr6 20671252 20671573 -168607981 - MLT1A2 LTR MaLR 0 374 4 677 103 10 0 chr6 20675811 20675908 -168603646 + MSTB1 LTR MaLR 335 432 0 316 235 31 10 chr6 20676001 20676099 -168603455 + MER103 DNA DNA 66 165 -1 293 288 182 24 chr6 20676830 20677000 -168602554 + MIR SINE MIR 45 241 -21 2716 98 3 5 chr6 20677036 20677412 -168602142 + THE1C LTR MaLR 1 375 0 198 0 0 0 chr6 20678022 20678044 -168601510 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 420 55 0 0 chr6 20678043 20678098 -168601456 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 148 19 19 chr6 20678157 20678211 -168601343 + CT-rich Low_complexity Low_complexity 2 55 0 353 272 82 84 chr6 20679413 20679746 -168599808 - MLT1J1 LTR MaLR -71 375 20 293 298 12 0 chr6 20680271 20680355 -168599199 + L1ME LINE L1 5523 5607 -514 393 86 0 0 chr6 20680662 20680720 -168598834 + (T)n Simple_repeat Simple_repeat 1 58 0 2066 103 10 48 chr6 20680799 20681111 -168598443 - AluSq SINE Alu -13 300 1 2169 122 0 0 chr6 20682981 20683284 -168596270 - AluSx SINE Alu -5 307 5 213 343 0 0 chr6 20683429 20683496 -168596058 + L2 LINE L2 3247 3313 0 517 328 15 30 chr6 20683874 20684072 -168595482 - MIR SINE MIR -65 197 3 1273 149 61 105 chr6 20685956 20686251 -168593303 + AluJo SINE Alu 1 282 -30 210 319 112 35 chr6 20687103 20687219 -168592335 - MIR SINE MIR -46 216 92 285 375 65 5 chr6 20687418 20687602 -168591952 - L2 LINE L2 -209 3063 2869 588 286 50 14 chr6 20687602 20687822 -168591732 - MER102b DNA MER1_type -1 340 113 426 209 27 36 chr6 20688008 20688118 -168591436 + MIR3 SINE MIR 77 185 -23 1338 259 37 94 chr6 20688248 20689293 -168590261 + L1MEc LINE L1 2176 3121 -3094 3881 152 25 23 chr6 20689294 20689689 -168589865 - L1 LINE L1 -2242 3904 3506 1313 112 36 83 chr6 20689689 20689882 -168589672 - L1MA2 LINE L1 -1 6303 6125 1860 158 0 20 chr6 20689882 20690186 -168589368 - AluSx SINE Alu -10 302 5 1313 112 36 83 chr6 20690186 20690268 -168589286 - L1MA2 LINE L1 -179 6125 6041 3881 152 25 23 chr6 20690268 20690648 -168588906 - L1 LINE L1 -2640 3506 3128 3487 187 16 50 chr6 20690644 20691431 -168588123 + L1PA15 LINE L1 5400 6160 -5 * 360 0 0 0 chr6 20691453 20691493 -168588061 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 20691494 20691533 -168588021 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 184 0 0 chr6 20691570 20691608 -168587946 + FLAM_A SINE Alu 1 38 -95 528 144 62 0 chr6 20691610 20691707 -168587847 + AluY SINE Alu 207 309 -2 2967 126 13 2 chr6 20691709 20692184 -168587370 + L1MA6 LINE L1 5821 6300 0 1268 268 78 12 chr6 20692217 20692974 -168586580 + L1ME2 LINE L1 4872 5677 -489 439 182 8 132 chr6 20692980 20693101 -168586453 - Tigger3(Golem) DNA MER2_type 0 3038 2933 255 239 127 0 chr6 20693212 20693226 -168586328 - Tigger3(Golem) DNA MER2_type -522 80 69 2180 34 8 0 chr6 20693226 20693493 -168586061 - L1PA4 LINE L1 -3 6152 5884 255 239 127 0 chr6 20693493 20693549 -168586005 - Tigger3(Golem) DNA MER2_type -533 69 1 785 255 53 18 chr6 20693550 20693878 -168585676 + L1ME2 LINE L1 5689 5967 -197 342 108 40 14 chr6 20693879 20693953 -168585601 + GA-rich Low_complexity Low_complexity 4 79 0 817 111 37 6 chr6 20694063 20694225 -168585329 + GA-rich Low_complexity Low_complexity 4 170 0 460 279 16 14 chr6 20694254 20694427 -168585127 + L1ME2 LINE L1 5992 6166 0 478 222 0 0 chr6 20694498 20694597 -168584957 + FLAM_A SINE Alu 44 142 0 180 176 0 0 chr6 20694654 20694688 -168584866 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 468 203 80 11 chr6 20694786 20694973 -168584581 + L1ME2 LINE L1 4317 4516 -1630 * 1793 241 65 46 chr6 20694944 20695657 -168583897 + L1ME2 LINE L1 5366 6091 -73 826 311 109 45 chr6 20695676 20696550 -168583004 + L2 LINE L2 2358 3313 0 348 261 176 29 chr6 20696615 20696956 -168582598 - L1ME4a LINE L1 -4 6117 5727 431 216 86 35 chr6 20696956 20697072 -168582482 + MIR SINE MIR 127 248 -14 361 153 222 0 chr6 20698194 20698266 -168581288 - MER3 DNA MER1_type -108 101 14 33 43 0 0 chr6 20698608 20698655 -168580899 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr6 20699443 20699484 -168580070 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 229 92 37 chr6 20699910 20700128 -168579426 - L1MC5 LINE L1 -36 7925 7696 425 233 111 33 chr6 20700141 20700321 -168579233 + L1MC5 LINE L1 7325 7518 -443 282 64 0 43 chr6 20700353 20700400 -168579154 + L1MC5 LINE L1 7603 7647 -314 264 59 0 0 chr6 20700647 20700681 -168578873 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 721 235 105 0 chr6 20701562 20701724 -168577830 - MER58A DNA MER1_type -35 189 11 2300 107 3 0 chr6 20701849 20702159 -168577395 - AluSp SINE Alu -2 311 1 277 217 0 0 chr6 20702175 20702221 -168577333 - L2 LINE L2 -27 3245 3200 182 338 14 0 chr6 20702591 20702662 -168576892 - L2 LINE L2 -527 2787 2716 1527 268 42 28 chr6 20704299 20704770 -168574784 - MER45C DNA AcHobo 0 953 476 946 213 99 116 chr6 20704771 20705204 -168574350 + LTR16A1 LTR ERVL 32 457 0 346 326 70 35 chr6 20705220 20705392 -168574162 - L2 LINE L2 -213 3100 2923 1774 228 45 45 chr6 20705434 20705903 -168573651 + MLT1D LTR MaLR 37 505 0 2619 277 106 25 chr6 20705903 20705952 -168573602 - L2 LINE L2 -378 2936 2892 2541 94 3 25 chr6 20705952 20706315 -168573239 - THE1A LTR MaLR 0 355 1 2619 277 106 25 chr6 20706315 20707343 -168572211 - L2 LINE L2 -422 2892 1772 1775 168 20 0 chr6 20707343 20707647 -168571907 - MLT2D LTR ERVL -104 310 1 35 24 0 0 chr6 20707670 20707712 -168571842 + AT_rich Low_complexity Low_complexity 1 42 0 7484 22 7 1 chr6 20707719 20708829 -168570725 - L1PA3 LINE L1 0 6155 5056 1236 288 156 13 chr6 20708852 20709488 -168570066 - L2 LINE L2 -1641 1673 947 1269 186 122 20 chr6 20709517 20709861 -168569693 + L1MC2 LINE L1 5942 6320 -24 2036 127 41 8 chr6 20709979 20710444 -168569110 + L1MA4A LINE L1 5137 5618 -682 2085 122 60 18 chr6 20710479 20710864 -168568690 + L1MA4A LINE L1 5899 6299 -4 488 326 60 18 chr6 20712144 20712426 -168567128 - L3b LINE CR1 -107 1476 1183 216 233 0 0 chr6 20712900 20712943 -168566611 - L2 LINE L2 -6 3307 3265 226 222 0 19 chr6 20713753 20713807 -168565747 - L2 LINE L2 -1 3271 3219 23 0 0 0 chr6 20714077 20714100 -168565454 + AT_rich Low_complexity Low_complexity 1 23 0 242 250 197 0 chr6 20714628 20714704 -168564850 + MIR3 SINE MIR 113 203 -5 215 386 20 20 chr6 20716607 20716708 -168562846 + L2 LINE L2 3171 3271 -1 2098 139 0 3 chr6 20717499 20717808 -168561746 + AluSg SINE Alu 1 308 -2 487 265 191 5 chr6 20717810 20717999 -168561555 + MIR SINE MIR 17 240 -22 182 264 161 23 chr6 20719108 20719195 -168560359 - L2 LINE L2 -5 3308 3210 408 288 38 23 chr6 20720919 20721051 -168558503 - MIR3 SINE MIR -21 187 54 344 264 157 0 chr6 20722104 20722244 -168557310 - MIR SINE MIR -10 252 91 464 282 74 31 chr6 20722254 20722417 -168557137 + MER91A DNA MER1_type 1 170 -26 185 167 0 7 chr6 20722818 20722852 -168556702 + L2 LINE L2 3216 3290 -23 289 296 72 56 chr6 20723084 20723209 -168556345 + L2 LINE L2 3137 3263 -9 2554 59 0 3 chr6 20723976 20724307 -168555247 - AluY SINE Alu 0 335 6 218 312 48 48 chr6 20725327 20725452 -168554102 + MIR3 SINE MIR 30 154 -54 2063 110 11 7 chr6 20725797 20726109 -168553445 - AluSx SINE Alu 0 313 1 270 231 62 69 chr6 20727674 20727834 -168551720 + MER103 DNA DNA 1 159 -7 852 175 75 0 chr6 20728137 20728297 -168551257 + MLT1B LTR MaLR 1 172 -218 248 262 0 0 chr6 20728375 20728436 -168551118 + MLT1K LTR MaLR 487 547 -41 995 216 5 20 chr6 20728559 20728758 -168550796 + MLT1B LTR MaLR 195 390 0 298 281 62 0 chr6 20729098 20729194 -168550360 + MLT1K LTR MaLR 487 588 0 368 274 5 99 chr6 20729927 20730128 -168549426 - L2 LINE L2 -5 3308 3127 1762 241 107 14 chr6 20730138 20730707 -168548847 + MLT2E LTR ERVL 7 628 0 213 336 40 24 chr6 20730716 20730841 -168548713 - L2 LINE L2 -191 3122 2996 276 30 0 0 chr6 20731974 20732007 -168547547 + (TC)n Simple_repeat Simple_repeat 2 34 0 766 176 0 23 chr6 20732007 20732138 -168547416 - FLAM_C SINE Alu -5 128 1 1127 104 203 5 chr6 20732709 20732901 -168546653 - MER30 DNA MER1_type 0 230 1 24 96 0 0 chr6 20733701 20733774 -168545780 + AT_rich Low_complexity Low_complexity 1 73 0 283 235 0 50 chr6 20734398 20734517 -168545037 + A-rich Low_complexity Low_complexity 2 114 0 630 204 43 81 chr6 20734944 20735130 -168544424 + L2 LINE L2 3135 3313 0 1292 122 23 14 chr6 20735381 20735595 -168543959 - L1MC1 LINE L1 -2 6331 6116 5857 264 22 11 chr6 20735595 20737755 -168541799 - L1PA15-16 LINE L1 -2612 4237 2050 599 137 10 0 chr6 20737756 20737858 -168541696 - AluSg/x SINE Alu -2 308 206 282 125 0 0 chr6 20737858 20737898 -168541656 - Alu SINE Alu -261 40 1 6078 145 1 50 chr6 20737898 20738924 -168540630 - L1PA15-16 LINE L1 -4803 2046 1071 2615 239 27 4 chr6 20738924 20739626 -168539928 - L1M4 LINE L1 -979 5167 4450 1158 230 32 68 chr6 20739626 20740091 -168539463 + MER74A LTR ERVL 2 528 -30 916 297 64 12 chr6 20740161 20740488 -168539066 + LTR16C LTR ERVL 99 442 -49 676 208 40 130 chr6 20740521 20740868 -168538686 - MLT1D LTR MaLR -50 455 21 304 85 0 21 chr6 20740896 20740943 -168538611 + LTR16C LTR ERVL 445 490 -1 324 198 72 18 chr6 20741879 20742046 -168537508 + (TA)n Simple_repeat Simple_repeat 2 177 0 419 282 76 0 chr6 20742072 20742203 -168537351 + MIR SINE MIR 105 245 -17 1881 256 42 19 chr6 20742667 20743209 -168536345 + MLT1H1 LTR MaLR 1 555 0 25 31 0 0 chr6 20743669 20743701 -168535853 + AT_rich Low_complexity Low_complexity 1 32 0 233 339 206 18 chr6 20743960 20744299 -168535255 + L2 LINE L2 2225 2627 -687 1981 271 70 44 chr6 20744479 20745544 -168534010 - L1ME3A LINE L1 -9 6161 5125 1681 194 3 7 chr6 20745544 20745837 -168533717 + AluJb SINE Alu 1 292 -20 1981 271 70 44 chr6 20745837 20745971 -168533583 - L1ME3A LINE L1 -1045 5125 4996 2612 52 0 0 chr6 20745971 20746280 -168533274 + AluY SINE Alu 3 311 0 1981 271 70 44 chr6 20746280 20746521 -168533033 - L1ME3A LINE L1 -1174 4996 4763 2256 103 0 3 chr6 20746521 20746823 -168532731 - AluSx SINE Alu -11 301 1 1981 271 70 44 chr6 20746823 20747029 -168532525 - L1ME3A LINE L1 -1407 4763 4469 345 400 63 44 chr6 20747083 20747482 -168532072 + L2 LINE L2 2835 3244 -28 1828 149 7 40 chr6 20747482 20747784 -168531770 + AluJo SINE Alu 1 292 -20 345 400 63 44 chr6 20747784 20747814 -168531740 + L2 LINE L2 3244 3272 0 235 309 107 62 chr6 20748031 20748209 -168531345 + MER5A DNA MER1_type 2 187 -2 309 26 0 0 chr6 20748770 20748808 -168530746 + (TG)n Simple_repeat Simple_repeat 2 39 0 577 228 64 29 chr6 20750191 20750362 -168529192 - MER5B DNA MER1_type 0 178 2 419 242 59 113 chr6 20750378 20750564 -168528990 + MER5B DNA MER1_type 1 176 -2 342 333 41 20 chr6 20751195 20751390 -168528164 - MIR SINE MIR -30 232 34 1606 210 100 30 chr6 20752223 20752695 -168526859 - MLT1D LTR MaLR 0 505 1 696 267 78 62 chr6 20754279 20754537 -168525017 + MLT1H LTR MaLR 1 262 -287 1012 277 139 7 chr6 20754638 20755341 -168524213 + L1ME1 LINE L1 1949 2702 -3513 1447 249 121 14 chr6 20755352 20755385 -168524169 + L1ME1 LINE L1 5601 5629 -606 414 0 0 0 chr6 20755385 20755431 -168524123 + (TA)n Simple_repeat Simple_repeat 2 47 0 2121 111 3 3 chr6 20755441 20755730 -168523824 - AluSg SINE Alu -21 289 1 1447 249 121 14 chr6 20755730 20756258 -168523296 + L1ME1 LINE L1 5637 6207 -28 340 336 14 42 chr6 20756808 20756951 -168522603 - L2 LINE L2 -944 2370 2232 246 62 0 0 chr6 20757289 20757321 -168522233 + (CA)n Simple_repeat Simple_repeat 2 33 0 714 268 61 58 chr6 20759597 20759910 -168519644 - MER102a DNA MER1_type -16 314 1 260 270 16 0 chr6 20759953 20760016 -168519538 + GA-rich Low_complexity Low_complexity 1 64 0 1838 84 26 4 chr6 20760047 20760320 -168519234 - L1MA1 LINE L1 0 6302 6024 340 283 9 0 chr6 20760483 20760589 -168518965 - L1M4 LINE L1 -1155 4991 4885 358 122 40 0 chr6 20760672 20760746 -168518808 + GA-rich Low_complexity Low_complexity 1 77 0 277 250 134 0 chr6 20760748 20760860 -168518694 - L1M4 LINE L1 -1316 4830 4704 1467 269 65 11 chr6 20760994 20761514 -168518040 + L1ME3A LINE L1 5615 6162 -8 296 100 0 20 chr6 20761874 20761924 -168517630 + (TTTCC)n Simple_repeat Simple_repeat 2 50 0 391 339 94 29 chr6 20762589 20762834 -168516720 - LTR16C LTR ERVL -110 381 121 314 356 43 12 chr6 20763050 20763213 -168516341 + MER5A DNA MER1_type 17 184 -5 201 129 0 0 chr6 20764310 20764341 -168515213 + (GA)n Simple_repeat Simple_repeat 2 32 0 225 132 0 0 chr6 20764718 20764756 -168514798 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2955 128 43 63 chr6 20764759 20765297 -168514257 + MER1A DNA MER1_type 1 527 0 354 257 180 11 chr6 20765614 20765797 -168513757 - L1ME3A LINE L1 -321 5849 5636 1146 180 31 0 chr6 20765797 20765991 -168513563 - MER20 DNA MER1_type 0 219 20 705 277 88 20 chr6 20765992 20766462 -168513092 - L1ME3A LINE L1 -518 5644 5146 24 77 0 0 chr6 20766462 20766514 -168513040 + AT_rich Low_complexity Low_complexity 1 52 0 837 246 22 18 chr6 20766587 20766815 -168512739 + MLT1F LTR MaLR 143 371 -171 631 174 0 9 chr6 20766834 20766943 -168512611 + MLT1A1 LTR MaLR 42 149 -216 441 215 47 67 chr6 20766931 20767080 -168512474 + MLT1F LTR MaLR 422 567 0 * 11846 18 1 0 chr6 20767367 20768746 -168510808 - L1P LINE L1 -1397 4749 3370 376 119 95 24 chr6 20769136 20769220 -168510334 - L1MC2 LINE L1 0 6344 6255 684 206 0 21 chr6 20769226 20769367 -168510187 - L1MC3 LINE L1 -439 7346 7209 * 3727 171 103 99 chr6 20769347 20769546 -168510008 - L1MC3 LINE L1 -93 7692 7495 2061 148 0 6 chr6 20769546 20769857 -168509697 - AluSg SINE Alu 0 310 2 3727 171 103 99 chr6 20769857 20770189 -168509365 - L1MC3 LINE L1 -290 7495 7166 322 287 0 10 chr6 20770189 20770290 -168509264 - MLT1F1 LTR MaLR -442 125 26 3727 171 103 99 chr6 20770290 20770496 -168509058 - L1MC3 LINE L1 -619 7166 6962 180 0 0 0 chr6 20770496 20770516 -168509038 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3727 171 103 99 chr6 20770516 20771029 -168508525 - L1MC3 LINE L1 -823 6962 6335 1430 82 0 0 chr6 20771066 20771250 -168508304 - AluY SINE Alu -4 307 124 5457 188 32 11 chr6 20771686 20773289 -168506265 - L1MC1 LINE L1 -5 6328 4694 3063 45 3 0 chr6 20773912 20774287 -168505267 - L1PA8 LINE L1 -2 6170 5795 281 274 39 20 chr6 20775184 20775286 -168504268 + MER94 DNA DNA 1 104 -30 2519 213 44 15 chr6 20775286 20776028 -168503526 - L1MB7 LINE L1 -258 5926 5160 1602 262 21 24 chr6 20776059 20776698 -168502856 - L1M4c LINE L1 -4315 2248 1469 248 243 45 9 chr6 20776699 20776810 -168502744 - L1MB7 LINE L1 -3211 2935 2821 265 165 107 58 chr6 20776856 20776959 -168502595 - LTR26 LTR ERV1 -31 572 465 808 270 86 35 chr6 20777307 20777852 -168501702 - L1MB7 LINE L1 -3335 2811 2239 2332 158 109 23 chr6 20777854 20778378 -168501176 + LTR49 LTR ERV1 1 569 -26 346 207 186 41 chr6 20778396 20778541 -168501013 - L1MEc LINE L1 -4047 2349 2184 523 160 84 0 chr6 20778608 20778727 -168500827 - L1 LINE L1 -1422 4724 4596 389 169 36 36 chr6 20778858 20779024 -168500530 + (TA)n Simple_repeat Simple_repeat 1 166 0 262 254 8 57 chr6 20779025 20779147 -168500407 - L1MC4 LINE L1 -1338 6704 6589 * 8469 194 34 27 chr6 20779141 20780429 -168499125 - L1 LINE L1 -1545 4601 3294 6575 76 12 3 chr6 20780429 20781888 -168497666 - L1PA10 LINE L1 -14 6154 4678 8469 194 34 27 chr6 20781888 20782641 -168496913 - L1 LINE L1 -2852 3294 2547 226 204 0 74 chr6 20782646 20782700 -168496854 + L1MA7 LINE L1 1357 1406 -6090 3052 302 72 40 chr6 20782738 20785244 -168494310 + L1MA7 LINE L1 1268 3499 -4066 1731 146 15 0 chr6 20785247 20785521 -168494033 + AluJb SINE Alu 1 278 -34 871 122 6 33 chr6 20785539 20785720 -168493834 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 242 229 14 0 chr6 20785730 20785800 -168493754 + GA-rich Low_complexity Low_complexity 1 71 0 2226 228 22 17 chr6 20785802 20786564 -168492990 + L1MA7 LINE L1 3462 4228 -3337 * 4769 192 26 28 chr6 20786555 20787362 -168492192 + L1MA7 LINE L1 5033 5840 -1870 6209 87 7 0 chr6 20787362 20788032 -168491522 - L1PA10 LINE L1 -1 6167 5481 2102 148 0 0 chr6 20788032 20788330 -168491224 - AluSx SINE Alu -14 298 1 6209 87 7 0 chr6 20788330 20788967 -168490587 - L1PA10 LINE L1 -687 5481 4850 4769 192 26 28 chr6 20788967 20789704 -168489850 + L1MA7 LINE L1 5840 6574 -1136 387 105 0 0 chr6 20789704 20789761 -168489793 + (CA)n Simple_repeat Simple_repeat 2 58 0 4769 192 26 28 chr6 20789761 20790383 -168489171 + L1MA7 LINE L1 6574 7195 -515 183 80 0 0 chr6 20790383 20790408 -168489146 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 194 0 0 chr6 20790408 20790444 -168489110 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 238 186 0 134 chr6 20790563 20790660 -168488894 - L1MC4 LINE L1 -1339 6703 6620 308 314 0 10 chr6 20790662 20790764 -168488790 + (TA)n Simple_repeat Simple_repeat 2 102 0 2235 157 36 38 chr6 20790774 20791277 -168488277 + L1MA7 LINE L1 7202 7703 -7 1518 234 204 11 chr6 20791298 20792373 -168487181 - L1 LINE L1 -3585 3980 2655 5804 59 8 1 chr6 20792373 20793116 -168486438 + L1PA7 LINE L1 5403 6150 -4 22 35 0 0 chr6 20793116 20793145 -168486409 + AT_rich Low_complexity Low_complexity 1 29 0 4265 186 10 12 chr6 20793146 20794152 -168485402 - L1P LINE L1 -1561 4585 3371 3282 246 78 99 chr6 20794147 20794746 -168484808 - L1M3c LINE L1 -4577 1564 954 * 193 29 29 29 chr6 20794746 20794781 -168484773 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3282 246 78 99 chr6 20794781 20794835 -168484719 - L1M3c LINE L1 -5187 954 900 2165 114 0 29 chr6 20794835 20795151 -168484403 - AluSc SINE Alu 0 309 3 3282 246 78 99 chr6 20795151 20796089 -168483465 - L1M3c LINE L1 -5241 900 5 334 269 149 0 chr6 20796294 20796428 -168483126 + L2 LINE L2 3159 3312 -1 23 54 0 0 chr6 20798557 20798594 -168480960 + AT_rich Low_complexity Low_complexity 1 37 0 1460 191 12 8 chr6 20798904 20799161 -168480393 - AluJo SINE Alu -20 292 35 2536 164 31 0 chr6 20799461 20799912 -168479642 + LTR40c LTR ERVL 1 465 0 897 235 4 25 chr6 20800599 20800837 -168478717 - MER106A DNA MER1_type -3 233 1 712 269 115 8 chr6 20801031 20801265 -168478289 + MIR SINE MIR 2 260 -2 1525 166 3 108 chr6 20801323 20801666 -168477888 + AluJo SINE Alu 1 307 -5 2442 51 0 38 chr6 20802015 20802329 -168477225 - AluY SINE Alu -9 302 1 23 68 0 0 chr6 20802517 20802561 -168476993 + AT_rich Low_complexity Low_complexity 1 44 0 264 281 115 10 chr6 20802983 20803079 -168476475 + MIR SINE MIR 46 151 -111 2016 208 92 45 chr6 20803493 20804129 -168475425 + MLT1E2 LTR MaLR 2 623 -3 204 277 0 0 chr6 20804208 20804255 -168475299 - MIR SINE MIR 0 262 216 183 309 111 12 chr6 20804327 20804408 -168475146 - MIR SINE MIR -151 111 23 1529 172 16 62 chr6 20805785 20806105 -168473449 + AluJo SINE Alu 1 305 -7 363 275 174 40 chr6 20806289 20806565 -168472989 + HAL1 LINE L1 810 1122 -1385 21 0 0 0 chr6 20806691 20806712 -168472842 + AT_rich Low_complexity Low_complexity 1 21 0 2152 100 19 23 chr6 20806891 20807201 -168472353 + AluSc SINE Alu 1 309 0 186 179 0 0 chr6 20807201 20807233 -168472321 + A-rich Low_complexity Low_complexity 5 39 0 1166 210 81 23 chr6 20807252 20807811 -168471743 + MLT1E1 LTR MaLR 2 651 -3 543 239 167 22 chr6 20807823 20808045 -168471509 + HAL1 LINE L1 1397 1650 -857 1664 238 62 34 chr6 20808244 20808821 -168470733 - L1ME3 LINE L1 -1 6161 5572 539 333 139 17 chr6 20808968 20809508 -168470046 + L2 LINE L2 2682 3291 -22 27 29 0 0 chr6 20809829 20809863 -168469691 + AT_rich Low_complexity Low_complexity 1 34 0 596 347 34 18 chr6 20813834 20814088 -168465466 + MIR SINE MIR 6 262 0 21 57 0 0 chr6 20815153 20815188 -168464366 + AT_rich Low_complexity Low_complexity 1 35 0 3204 188 113 32 chr6 20815477 20816589 -168462965 - L1MB7 LINE L1 -31 6153 4963 * 3473 232 68 51 chr6 20816588 20817857 -168461697 - L1MB7 LINE L1 -1497 4649 3360 336 315 92 45 chr6 20818179 20818361 -168461193 + MLT1J2 LTR MaLR 17 220 -230 1915 151 39 21 chr6 20818361 20818692 -168460862 - MER1B DNA MER1_type 0 337 1 336 315 92 45 chr6 20818692 20818801 -168460753 + MLT1J2 LTR MaLR 220 322 -128 2463 49 0 20 chr6 20818802 20819108 -168460446 - AluY SINE Alu -11 300 1 226 306 28 0 chr6 20819151 20819223 -168460331 + MLT1I LTR MaLR 334 407 -2 11514 200 62 33 chr6 20819552 20821929 -168457625 - L1MA4 LINE L1 -1 7718 5412 2455 87 0 0 chr6 20821929 20822240 -168457314 - AluY SINE Alu 0 311 1 11514 200 62 33 chr6 20822240 20823498 -168456056 - L1MA4 LINE L1 -2307 5412 4192 2272 146 72 12 chr6 20823498 20823902 -168455652 - MSTA LTR MaLR 0 428 1 11514 200 62 33 chr6 20823902 20825738 -168453816 - L1MA4 LINE L1 -3527 4192 2007 1564 192 76 38 chr6 20825740 20826162 -168453392 - L1MA4 LINE L1 -7115 450 13 1064 238 135 81 chr6 20826383 20827505 -168452049 - HAL1b LINE L1 -62 1286 105 26 0 0 0 chr6 20827807 20827833 -168451721 + AT_rich Low_complexity Low_complexity 1 26 0 470 315 67 17 chr6 20829302 20829480 -168450074 + MIR3 SINE MIR 1 187 -21 1664 182 12 87 chr6 20829927 20830329 -168449225 + MLT1A2 LTR MaLR 3 374 0 696 222 23 77 chr6 20832127 20832348 -168447206 - MER63A DNA MER1_type -1 209 1 201 316 18 0 chr6 20833209 20833266 -168446288 - L2 LINE L2 -2 3311 3254 248 272 25 0 chr6 20833408 20833489 -168446065 - L1MA9 LINE L1 -38 6274 6192 1444 180 3 84 chr6 20833906 20834229 -168445325 + AluJo SINE Alu 1 297 -15 463 246 49 49 chr6 20834431 20834634 -168444920 - MLT1J LTR MaLR -9 502 300 245 163 0 0 chr6 20835574 20835617 -168443937 + L1MC1 LINE L1 5618 5660 -684 5760 62 1 5 chr6 20835618 20836364 -168443190 + L1PA8 LINE L1 5428 6170 -2 3698 145 31 9 chr6 20836365 20837019 -168442535 + L1MC1 LINE L1 5664 6331 -2 732 172 8 15 chr6 20837751 20837885 -168441669 + FLAM_C SINE Alu 1 133 0 240 154 13 90 chr6 20837944 20838022 -168441532 - L1MC4 LINE L1 -1321 6721 6650 454 309 18 30 chr6 20838551 20838719 -168440835 + MER5B DNA MER1_type 1 166 -12 21 0 0 0 chr6 20839118 20839139 -168440415 + AT_rich Low_complexity Low_complexity 1 21 0 2156 193 12 14 chr6 20839896 20840310 -168439244 + L1MCa LINE L1 41 453 -5973 12509 212 20 64 chr6 20840514 20840560 -168438994 - L1PA15 LINE L1 -3 7600 7553 3506 109 35 11 chr6 20840560 20841126 -168438428 - L1MA3 LINE L1 0 6305 5726 12509 212 20 64 chr6 20841126 20842512 -168437042 - L1PA15 LINE L1 -50 7553 6107 1360 165 114 22 chr6 20842512 20842785 -168436769 - MSTA LTR MaLR -130 298 1 12509 212 20 64 chr6 20842785 20845929 -168433625 - L1PA15 LINE L1 -1496 6107 2824 2671 132 24 5 chr6 20845929 20846346 -168433208 + MSTA LTR MaLR 1 425 -3 12509 212 20 64 chr6 20846346 20846897 -168432657 - L1PA15 LINE L1 -4779 2824 2455 953 39 0 39 chr6 20846897 20847046 -168432508 - L1PA3 LINE L1 0 6155 6034 12509 212 20 64 chr6 20847046 20847256 -168432298 - L1PA15 LINE L1 -5148 2455 2237 836 355 27 34 chr6 20847907 20848349 -168431205 - L1PA15 LINE L1 -6348 1226 788 1668 144 32 16 chr6 20848358 20848841 -168430713 + L1MC1 LINE L1 1425 2008 -4418 1247 183 32 67 chr6 20848841 20849223 -168430331 - MLT1A1 LTR MaLR 0 428 4 7702 255 47 21 chr6 20849255 20849630 -168429924 + L1MC1 LINE L1 2187 2551 -3875 468 0 0 0 chr6 20849630 20849682 -168429872 + (CA)n Simple_repeat Simple_repeat 2 53 0 7702 255 47 21 chr6 20849682 20851871 -168427683 + L1MC1 LINE L1 2551 4924 -1502 2234 99 0 34 chr6 20851871 20852193 -168427361 + AluY SINE Alu 1 311 0 7702 255 47 21 chr6 20852193 20852823 -168426731 + L1MC1 LINE L1 4924 5536 -890 478 231 0 38 chr6 20852896 20853082 -168426472 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 5800 145 41 14 chr6 20853190 20854229 -168425325 + L1MC1 LINE L1 5544 6611 -2 225 0 0 0 chr6 20854258 20854283 -168425271 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 225 329 35 0 chr6 20855366 20855451 -168424103 - MIR3 SINE MIR -21 187 100 207 0 0 0 chr6 20855462 20855485 -168424069 + (TG)n Simple_repeat Simple_repeat 2 24 0 1278 173 145 9 chr6 20857485 20857803 -168421751 - MER46B DNA MER2_type 0 236 1 222 37 0 0 chr6 20857809 20857836 -168421718 + (TG)n Simple_repeat Simple_repeat 2 28 0 318 26 0 0 chr6 20857836 20857875 -168421679 + (CA)n Simple_repeat Simple_repeat 2 40 0 188 329 157 0 chr6 20857878 20857948 -168421606 - MIR SINE MIR -150 112 32 272 345 11 11 chr6 20858038 20858125 -168421429 + L2 LINE L2 3141 3227 -45 293 276 134 65 chr6 20858355 20858616 -168420938 + MLT1I LTR MaLR 121 399 -10 599 248 94 20 chr6 20858906 20859108 -168420446 - MIR SINE MIR -31 231 15 1487 204 56 36 chr6 20859768 20860021 -168419533 + MLT1A1 LTR MaLR 1 265 -100 2448 124 53 17 chr6 20860021 20860433 -168419121 - MSTA LTR MaLR -1 427 1 1487 204 56 36 chr6 20860433 20860537 -168419017 + MLT1A1 LTR MaLR 265 365 0 3341 195 32 9 chr6 20860604 20861234 -168418320 + MER82 DNA MER2_type 1 644 -9 1261 244 15 66 chr6 20861234 20861628 -168417926 + MLT1A2 LTR MaLR 1 374 0 364 309 12 49 chr6 20861641 20861803 -168417751 - MIR SINE MIR -104 158 3 575 341 143 19 chr6 20866528 20866953 -168412601 - MLT1K LTR MaLR -14 574 97 624 163 255 0 chr6 20867077 20867230 -168412324 - L1M4 LINE L1 -3625 2521 2330 2217 124 0 9 chr6 20867638 20867953 -168411601 + AluSq SINE Alu 1 312 -1 342 220 53 83 chr6 20868050 20868182 -168411372 + L2 LINE L2 2929 3056 -216 521 190 26 113 chr6 20868695 20868890 -168410664 - MER104 DNA MER2_type -1 179 2 195 261 136 23 chr6 20868903 20868991 -168410563 - MIR3 SINE MIR -8 200 103 2347 111 0 0 chr6 20869362 20869668 -168409886 + AluSg SINE Alu 1 306 -4 1471 226 22 38 chr6 20870904 20871063 -168408491 - MLT1A1 LTR MaLR 0 365 205 1878 150 0 33 chr6 20871063 20871363 -168408191 + AluJo SINE Alu 1 290 -22 1471 226 22 38 chr6 20871363 20871574 -168407980 - MLT1A1 LTR MaLR -160 205 1 225 0 0 0 chr6 20871746 20871771 -168407783 + (T)n Simple_repeat Simple_repeat 1 25 0 267 271 33 74 chr6 20871791 20871913 -168407641 - MIR3 SINE MIR -5 203 87 441 215 47 67 chr6 20872712 20872861 -168406693 - MLT1F LTR MaLR 0 567 422 * 631 174 0 9 chr6 20872849 20872958 -168406596 - MLT1A1 LTR MaLR -216 149 42 837 246 22 18 chr6 20872977 20873205 -168406349 - MLT1F LTR MaLR -171 371 143 24 77 0 0 chr6 20873278 20873330 -168406224 + AT_rich Low_complexity Low_complexity 1 52 0 705 277 88 20 chr6 20873330 20873800 -168405754 + L1ME3A LINE L1 5146 5644 -518 1146 180 31 0 chr6 20873801 20873995 -168405559 + MER20 DNA MER1_type 20 219 0 354 257 180 11 chr6 20873995 20874178 -168405376 + L1ME3A LINE L1 5636 5849 -321 2955 128 43 63 chr6 20874495 20875033 -168404521 - MER1A DNA MER1_type 0 527 1 225 132 0 0 chr6 20875036 20875074 -168404480 + (CATA)n Simple_repeat Simple_repeat 3 40 0 201 129 0 0 chr6 20875451 20875482 -168404072 + (TC)n Simple_repeat Simple_repeat 2 32 0 314 356 43 12 chr6 20876579 20876742 -168402812 - MER5A DNA MER1_type -5 184 17 391 339 94 29 chr6 20876958 20877203 -168402351 + LTR16C LTR ERVL 121 381 -110 296 100 0 20 chr6 20877868 20877918 -168401636 + (GGAAA)n Simple_repeat Simple_repeat 2 50 0 1467 269 65 11 chr6 20878278 20878798 -168400756 - L1ME3A LINE L1 -8 6162 5615 277 250 134 0 chr6 20878932 20879044 -168400510 + L1M4 LINE L1 4704 4830 -1316 358 122 40 0 chr6 20879046 20879120 -168400434 + CT-rich Low_complexity Low_complexity 1 77 0 340 283 9 0 chr6 20879203 20879309 -168400245 + L1M4 LINE L1 4885 4991 -1155 1838 84 26 4 chr6 20879472 20879745 -168399809 + L1MA1 LINE L1 6024 6302 0 260 270 16 0 chr6 20879776 20879839 -168399715 + CT-rich Low_complexity Low_complexity 1 64 0 714 268 61 58 chr6 20879882 20880195 -168399359 + MER102a DNA MER1_type 1 314 -16 246 62 0 0 chr6 20882471 20882503 -168397051 + (TG)n Simple_repeat Simple_repeat 2 33 0 340 336 14 42 chr6 20882841 20882984 -168396570 + L2 LINE L2 2232 2370 -944 1447 249 121 14 chr6 20883534 20884062 -168395492 - L1ME1 LINE L1 -28 6138 5668 2121 111 3 3 chr6 20884062 20884351 -168395203 + AluSg SINE Alu 1 289 -21 414 0 0 0 chr6 20884361 20884407 -168395147 + (TA)n Simple_repeat Simple_repeat 2 47 0 1447 249 121 14 chr6 20884407 20884440 -168395114 - L1ME1 LINE L1 -506 5660 5532 1012 277 139 7 chr6 20884451 20885154 -168394400 - L1MEc LINE L1 -3513 2702 1949 696 267 78 62 chr6 20885255 20885513 -168394041 - MLT1H LTR MaLR -287 262 1 1606 210 100 30 chr6 20887097 20887569 -168391985 + MLT1D LTR MaLR 1 505 0 342 333 41 20 chr6 20888402 20888597 -168390957 + MIR SINE MIR 34 232 -30 419 220 70 124 chr6 20889228 20889414 -168390140 - MER5B DNA MER1_type -2 176 1 577 228 64 29 chr6 20889430 20889601 -168389953 + MER5B DNA MER1_type 2 178 0 489 17 0 0 chr6 20890984 20891042 -168388512 + (CA)n Simple_repeat Simple_repeat 2 59 0 190 274 131 69 chr6 20891603 20891778 -168387776 - MER5A DNA MER1_type -2 187 2 488 260 11 14 chr6 20992023 20992134 -168287420 - MER5A DNA MER1_type 0 189 67 2271 107 0 7 chr6 20992134 20992433 -168287121 + AluSx SINE Alu 1 297 -15 488 260 11 14 chr6 20992433 20992464 -168287090 - MER5A DNA MER1_type -122 67 37 1904 162 0 7 chr6 20993963 20994247 -168285307 + AluJb SINE Alu 1 282 -30 287 253 55 28 chr6 20994320 20994502 -168285052 - L1ME4a LINE L1 0 6121 5935 611 281 151 54 chr6 20994814 20995323 -168284231 - L2 LINE L2 0 3313 2855 186 43 0 0 chr6 20995323 20995346 -168284208 + (GAAAA)n Simple_repeat Simple_repeat 5 27 0 611 281 151 54 chr6 20995346 20995426 -168284128 - L2 LINE L2 -458 2855 1893 523 186 144 121 chr6 20996115 20996379 -168283175 - LTR16C LTR ERVL 0 491 222 374 237 47 39 chr6 20996836 20997011 -168282543 - MLT1I LTR MaLR -4 405 244 1297 202 130 55 chr6 20997099 20997605 -168281949 - LTR10B LTR ERV1 -3 544 1 306 155 113 0 chr6 20997647 20997718 -168281836 - MLT1J2 LTR MaLR -305 145 67 326 346 39 0 chr6 20998011 20998115 -168281439 - MIR3 SINE MIR -48 160 53 298 330 104 0 chr6 20998791 20998897 -168280657 + MIR3 SINE MIR 89 205 -3 357 305 98 98 chr6 20999192 20999474 -168280080 - L2 LINE L2 -3 3269 2985 2373 103 3 0 chr6 20999474 20999776 -168279778 + AluSp SINE Alu 1 303 -10 357 305 98 98 chr6 20999776 20999808 -168279746 - L2 LINE L2 -286 2986 2955 616 254 87 0 chr6 20999849 21000022 -168279532 + MIR SINE MIR 63 250 -12 459 306 23 68 chr6 21000046 21000311 -168279243 - L2 LINE L2 -823 2491 2239 1368 99 0 11 chr6 21000479 21000661 -168278893 - AluSc SINE Alu 0 309 130 213 39 0 0 chr6 21000785 21000811 -168278743 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr6 21001005 21001028 -168278526 + AT_rich Low_complexity Low_complexity 1 23 0 1379 135 13 9 chr6 21001695 21001924 -168277630 + MSTA LTR MaLR 187 416 -12 2403 52 0 3 chr6 21001947 21002237 -168277317 - AluY SINE Alu -22 289 1 430 288 16 47 chr6 21002657 21002977 -168276577 + L1MEd LINE L1 1019 1328 -4877 1035 305 76 49 chr6 21003657 21004151 -168275403 + L1MEd LINE L1 2213 2702 -3513 1601 186 13 26 chr6 21004151 21004457 -168275097 + AluJo SINE Alu 5 306 -6 1035 305 76 49 chr6 21004457 21004848 -168274706 + L1MEd LINE L1 2702 3081 -3134 519 267 64 30 chr6 21005005 21005207 -168274347 + LTR33 LTR ERVL 301 509 -12 24 0 0 0 chr6 21005582 21005606 -168273948 + AT_rich Low_complexity Low_complexity 1 24 0 292 256 45 77 chr6 21008538 21008694 -168270860 - MIR SINE MIR -72 190 40 385 264 0 0 chr6 21010161 21010248 -168269306 - Tigger5 DNA MER2_type 0 2323 2237 265 204 19 0 chr6 21010258 21010312 -168269242 - Tigger5 DNA MER2_type -2268 55 1 343 284 83 89 chr6 21013558 21013620 -168265934 + HAL1b LINE L1 83 144 -1204 2068 165 0 0 chr6 21013620 21013929 -168265625 + AluSx SINE Alu 1 309 -3 343 284 83 89 chr6 21013929 21014896 -168264658 + HAL1b LINE L1 144 1106 -242 5878 141 11 3 chr6 21014918 21015611 -168263943 - L1PA13 LINE L1 0 6814 6128 2342 104 7 0 chr6 21015611 21015920 -168263634 + AluSq SINE Alu 1 311 -2 5878 141 11 3 chr6 21015920 21018329 -168261225 - L1PA13 LINE L1 -686 6128 3510 2218 116 41 36 chr6 21018329 21018691 -168260863 - THE1B LTR MaLR 0 364 1 8877 112 112 2 chr6 21018691 21020115 -168259439 - THE1B-int LTR MaLR 0 1580 1 2137 114 44 39 chr6 21020115 21020475 -168259079 - THE1B LTR MaLR 0 364 3 9893 207 54 12 chr6 21020478 21023760 -168255794 - L1PA13 LINE L1 -3284 3513 79 1998 234 56 34 chr6 21023806 21024487 -168255067 - L1ME1 LINE L1 0 6166 5471 1745 193 3 6 chr6 21024511 21024822 -168254732 + AluJb SINE Alu 3 312 0 2300 160 14 17 chr6 21024838 21025251 -168254303 + L1PA16 LINE L1 5746 6157 -9 310 229 121 60 chr6 21025291 21025305 -168254249 + HAL1b LINE L1 1171 1183 -165 194 0 39 0 chr6 21025305 21025331 -168254223 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 310 229 121 60 chr6 21025331 21025482 -168254072 + HAL1b LINE L1 1183 1346 -2 238 316 0 0 chr6 21025512 21025607 -168253947 - L1ME LINE L1 -303 5818 5724 300 342 58 32 chr6 21025665 21025820 -168253734 - L1ME LINE L1 -515 5606 5448 5721 128 16 0 chr6 21025908 21026913 -168252641 - L1PA15 LINE L1 -7 6158 5155 4305 208 84 18 chr6 21026913 21027861 -168251693 - L1PA13 LINE L1 -4550 2237 1200 2118 131 137 13 chr6 21027861 21028242 -168251312 + MSTA LTR MaLR 1 428 0 4305 208 84 18 chr6 21028242 21028427 -168251127 - L1PA13 LINE L1 -5587 1200 1029 1707 254 16 70 chr6 21028748 21029420 -168250134 - L1PA13 LINE L1 -5871 916 281 4190 205 65 13 chr6 21029425 21030160 -168249394 - L1MC3 LINE L1 -743 5403 5491 1330 142 93 123 chr6 21030160 21030624 -168248930 + LTR7 LTR ERV1 1 450 0 4190 205 65 13 chr6 21030624 21031315 -168248239 - L1MC3 LINE L1 -654 5492 4839 1073 258 56 20 chr6 21031321 21031716 -168247838 - L1MCb LINE L1 -5596 449 41 1664 127 79 17 chr6 21031719 21032094 -168247460 - LTR7 LTR ERV1 0 450 1 2085 84 87 3 chr6 21032859 21033145 -168246409 - AluY SINE Alu -1 310 1 21 82 0 0 chr6 21033145 21033194 -168246360 + AT_rich Low_complexity Low_complexity 1 49 0 415 264 61 61 chr6 21033543 21033706 -168245848 + MIR SINE MIR 100 262 0 332 221 108 64 chr6 21033724 21033928 -168245626 + L2 LINE L2 3049 3261 -52 335 218 73 57 chr6 21034005 21034129 -168245425 - L1ME4a LINE L1 -42 6079 5954 309 303 148 7 chr6 21034134 21034289 -168245265 - L1ME4a LINE L1 -204 5917 5741 356 289 175 0 chr6 21034358 21034472 -168245082 - L2 LINE L2 0 3313 3180 206 389 46 28 chr6 21035660 21035768 -168243786 - L2 LINE L2 0 3272 3163 24 0 0 0 chr6 21036288 21036312 -168243242 + AT_rich Low_complexity Low_complexity 1 24 0 2922 156 35 22 chr6 21036509 21037048 -168242506 + MER44D DNA MER2_type 4 604 -1 23 54 0 0 chr6 21037561 21037598 -168241956 + AT_rich Low_complexity Low_complexity 1 37 0 254 331 225 0 chr6 21038094 21038263 -168241291 - MIR SINE MIR -51 211 5 40995 41 5 2 chr6 21038443 21044595 -168234959 + L1PA4 LINE L1 3 6155 0 252 0 0 0 chr6 21044713 21044741 -168234813 + (A)n Simple_repeat Simple_repeat 1 28 0 430 259 189 5 chr6 21044814 21045026 -168234528 - MIR SINE MIR -1 261 11 722 254 82 37 chr6 21045626 21045980 -168233574 - L1MC4a LINE L1 -1865 5943 5574 366 243 95 48 chr6 21046208 21046397 -168233157 - L1MC4a LINE L1 -2260 5548 5351 288 317 110 44 chr6 21046950 21047443 -168232111 - L1MC4a LINE L1 -1797 4349 3789 4526 174 27 15 chr6 21047443 21048354 -168231200 - L1MA10 LINE L1 -7 6327 5406 288 317 110 44 chr6 21048354 21048608 -168230946 - L1MC4a LINE L1 -2357 3789 3553 904 285 88 0 chr6 21048979 21049242 -168230312 - MER58 DNA MER1_type -54 2366 2 595 301 49 24 chr6 21051134 21051380 -168228174 - MLT1I LTR MaLR -1 408 157 1653 228 55 36 chr6 21052037 21052664 -168226890 + L1MCc LINE L1 993 1634 -4851 828 173 7 0 chr6 21052664 21052803 -168226751 - MLT1B LTR MaLR 0 390 251 3288 258 72 24 chr6 21052859 21055293 -168224261 + L1MCc LINE L1 1647 4375 -2566 2968 287 58 14 chr6 21055332 21056228 -168223326 + L1M4b LINE L1 13 947 -5912 25070 144 24 39 chr6 21056240 21060963 -168218591 + L1PA8 LINE L1 12 4661 -1485 6750 68 7 6 chr6 21060963 21062234 -168217320 + L1PA8 LINE L1 4909 6161 -11 2274 246 75 46 chr6 21062251 21063838 -168215716 + L1M4b LINE L1 936 2703 -4435 440 218 42 28 chr6 21064072 21064214 -168215340 + L1M4 LINE L1 1420 1563 -5292 2292 83 0 23 chr6 21064261 21064563 -168214991 + AluY SINE Alu 1 295 -16 5062 82 0 9 chr6 21064563 21065235 -168214319 + L1P LINE L1 2 667 -5479 7041 184 6 7 chr6 21165326 21166786 -168112768 - L1PA13 LINE L1 -1830 4967 3510 2218 116 41 36 chr6 21166786 21167148 -168112406 - THE1B LTR MaLR 0 364 1 8877 112 112 2 chr6 21167148 21168572 -168110982 - THE1B-int LTR MaLR 0 1580 1 2137 114 44 39 chr6 21168572 21168932 -168110622 - THE1B LTR MaLR 0 364 3 9888 207 54 12 chr6 21168935 21172217 -168107337 - L1PA13 LINE L1 -3284 3513 79 1998 234 56 34 chr6 21172263 21172944 -168106610 - L1ME1 LINE L1 0 6166 5471 1732 196 3 6 chr6 21172968 21173279 -168106275 + AluJb SINE Alu 3 312 0 2283 162 14 17 chr6 21173295 21173708 -168105846 + L1PA16 LINE L1 5746 6157 -9 310 230 105 66 chr6 21173786 21173938 -168105616 + HAL1b LINE L1 1189 1346 -2 238 316 0 0 chr6 21173968 21174063 -168105491 - L1ME LINE L1 -303 5818 5724 300 342 58 32 chr6 21174121 21174276 -168105278 - L1ME LINE L1 -515 5606 5448 5748 127 16 0 chr6 21174364 21175369 -168104185 - L1PA15 LINE L1 -7 6158 5155 4301 208 84 18 chr6 21175369 21176317 -168103237 - L1PA13 LINE L1 -4550 2237 1200 2118 131 137 13 chr6 21176317 21176698 -168102856 + MSTA LTR MaLR 1 428 0 4301 208 84 18 chr6 21176698 21176883 -168102671 - L1PA13 LINE L1 -5587 1200 1029 1707 254 16 70 chr6 21177204 21177876 -168101678 - L1PA13 LINE L1 -5871 916 281 4190 205 65 13 chr6 21177881 21178616 -168100938 - L1MC3 LINE L1 -743 5403 5491 1330 142 93 123 chr6 21178616 21179080 -168100474 + LTR7 LTR ERV1 1 450 0 4190 205 65 13 chr6 21179080 21179771 -168099783 - L1MC3 LINE L1 -654 5492 4839 1073 258 56 20 chr6 21179777 21180172 -168099382 - L1MCb LINE L1 -5596 449 41 1664 127 79 17 chr6 21180175 21180550 -168099004 - LTR7 LTR ERV1 0 450 1 2085 84 87 3 chr6 21181315 21181601 -168097953 - AluY SINE Alu -1 310 1 21 82 0 0 chr6 21181601 21181650 -168097904 + AT_rich Low_complexity Low_complexity 1 49 0 415 264 61 61 chr6 21181999 21182162 -168097392 + MIR SINE MIR 100 262 0 332 221 108 64 chr6 21182180 21182384 -168097170 + L2 LINE L2 3049 3261 -52 335 218 73 57 chr6 21182461 21182585 -168096969 - L1ME4a LINE L1 -42 6079 5954 309 303 148 7 chr6 21182590 21182745 -168096809 - L1ME4a LINE L1 -204 5917 5741 356 289 175 0 chr6 21182814 21182928 -168096626 - L2 LINE L2 0 3313 3180 206 389 46 28 chr6 21184116 21184224 -168095330 - L2 LINE L2 0 3272 3163 24 0 0 0 chr6 21184744 21184768 -168094786 + AT_rich Low_complexity Low_complexity 1 24 0 2922 156 35 22 chr6 21184965 21185504 -168094050 + MER44D DNA MER2_type 4 604 -1 23 54 0 0 chr6 21186017 21186054 -168093500 + AT_rich Low_complexity Low_complexity 1 37 0 254 331 225 0 chr6 21186550 21186719 -168092835 - MIR SINE MIR -51 211 5 41403 42 4 3 chr6 21186899 21193051 -168086503 + L1PA4 LINE L1 3 6155 0 252 0 0 0 chr6 21193169 21193197 -168086357 + (A)n Simple_repeat Simple_repeat 1 28 0 437 259 189 5 chr6 21193270 21193482 -168086072 - MIR SINE MIR -1 261 11 630 254 82 37 chr6 21194082 21194436 -168085118 - L1MC4a LINE L1 -1865 5943 5574 315 259 85 37 chr6 21194664 21194853 -168084701 - L1MC4a LINE L1 -2260 5548 5351 999 316 116 42 chr6 21195326 21195899 -168083655 - L1MC4a LINE L1 -1703 4443 3914 4471 171 29 16 chr6 21195899 21196810 -168082744 - L1MA10 LINE L1 -7 6327 5406 999 316 116 42 chr6 21196810 21197338 -168082216 - L1MC4a LINE L1 -2232 3914 3261 820 285 88 0 chr6 21197435 21197698 -168081856 - MER58 DNA MER1_type -54 2366 2 515 301 49 24 chr6 21199590 21199836 -168079718 - MLT1I LTR MaLR -1 408 157 1508 228 55 36 chr6 21200493 21201120 -168078434 + L1MCc LINE L1 993 1634 -4851 782 173 7 0 chr6 21201120 21201259 -168078295 - MLT1B LTR MaLR 0 390 251 2982 258 73 22 chr6 21201315 21203749 -168075805 + L1MCc LINE L1 1647 4375 -2566 2676 287 58 14 chr6 21203788 21204684 -168074870 + L1M4b LINE L1 13 947 -5912 23565 144 24 39 chr6 21204696 21209419 -168070135 + L1PA8 LINE L1 12 4661 -1485 6749 68 7 6 chr6 21209419 21210690 -168068864 + L1PA8 LINE L1 4909 6161 -11 2074 246 75 46 chr6 21210707 21212294 -168067260 + L1M4b LINE L1 936 2703 -4435 430 204 53 9 chr6 21212557 21212670 -168066884 + L1M4 LINE L1 1446 1563 -5292 2302 83 0 23 chr6 21212717 21213019 -168066535 + AluY SINE Alu 1 295 -16 41726 41 2 1 chr6 21213019 21219163 -168060391 + L1PA4 LINE L1 2 6152 -3 1602 249 62 50 chr6 21219198 21219726 -168059828 + L1M4 LINE L1 1642 2162 -4795 2266 116 0 0 chr6 21219726 21220037 -168059517 + AluSx SINE Alu 1 311 -1 1602 249 62 50 chr6 21220037 21221149 -168058405 + L1M4 LINE L1 2162 3383 -3574 1269 209 28 56 chr6 21221151 21221581 -168057973 - L1M4 LINE L1 -3127 3019 2602 * 1326 221 26 5 chr6 21221579 21221960 -168057594 + L1M4 LINE L1 4200 4588 -2369 831 211 67 61 chr6 21221957 21222079 -168057475 + L1MD3 LINE L1 7680 7800 -195 * 1976 117 0 38 chr6 21222079 21222420 -168057134 + AluSg SINE Alu 1 330 0 831 211 67 61 chr6 21222420 21222608 -168056946 + L1MD3 LINE L1 7800 7993 -2 251 239 0 54 chr6 21222724 21222816 -168056738 + L1ME3A LINE L1 6026 6112 -58 891 296 110 27 chr6 21223202 21223749 -168055805 - MLT1L LTR MaLR -13 602 11 266 229 90 35 chr6 21223799 21223943 -168055611 - L1M4 LINE L1 -2079 4067 3916 464 290 46 10 chr6 21225042 21225262 -168054292 - L1MC/D LINE L1 -460 5661 5468 272 333 80 26 chr6 21226612 21227077 -168052477 + HAL1 LINE L1 1171 1660 -847 207 0 0 0 chr6 21227369 21227392 -168052162 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 231 341 111 8 chr6 21228251 21228377 -168051177 + MIR3 SINE MIR 62 200 -8 814 252 33 19 chr6 21228781 21228991 -168050563 - MIR SINE MIR -10 252 40 2266 107 0 0 chr6 21229212 21229502 -168050052 - AluSc SINE Alu -19 290 1 486 341 153 0 chr6 21231031 21231254 -168048300 - MIR SINE MIR -1 261 5 645 289 154 60 chr6 21231683 21232321 -168047233 - L2 LINE L2 -8 3305 2593 901 339 40 2 chr6 21232321 21232716 -168046838 - L2 LINE L2 -971 2343 1934 1808 76 13 0 chr6 21233131 21233356 -168046198 + AluY SINE Alu 83 310 -1 263 233 17 0 chr6 21233507 21233567 -168045987 - MLT1J LTR MaLR -313 198 138 301 310 39 31 chr6 21233828 21233957 -168045597 + L2 LINE L2 2927 3056 -216 5238 253 41 9 chr6 21234554 21236044 -168043510 + L1MB3 LINE L1 68 1438 -5411 2679 197 44 2 chr6 21236069 21236687 -168042867 + L1MB3 LINE L1 2192 2835 -4014 873 196 64 46 chr6 21236688 21236969 -168042585 + pTR5 LTR ERV1 743 1028 -1410 5247 82 88 36 chr6 21237048 21237833 -168041721 + LTR12 LTR ERV1 1 826 0 27561 93 7 9 chr6 21237833 21242700 -168036854 + HERV9 LTR ERV1 1 4944 -3455 2286 155 167 52 chr6 21242701 21243508 -168036046 + Harlequin LTR ERV1 840 1739 -5157 * 5392 84 16 0 chr6 21243507 21244299 -168035255 + Harlequin LTR ERV1 504 8399 0 1418 224 19 0 chr6 21244309 21244630 -168034924 + L1MB5 LINE L1 5838 6164 -10 1154 167 53 30 chr6 21244630 21244869 -168034685 - L1M4 LINE L1 -664 5510 5257 2398 59 7 13 chr6 21244869 21245174 -168034380 + AluY SINE Alu 1 303 -8 1154 167 53 30 chr6 21245174 21245375 -168034179 - L1M4 LINE L1 -917 5257 5062 488 291 73 23 chr6 21245375 21245595 -168033959 + LTR16C LTR ERVL 261 491 0 1401 232 140 7 chr6 21245820 21246256 -168033298 - LTR54B LTR ERV1 0 498 5 236 232 174 29 chr6 21247908 21247977 -168031577 + MIR SINE MIR 46 124 -84 397 176 71 88 chr6 21248625 21248807 -168030747 + MER104 DNA MER2_type 2 180 0 441 260 8 41 chr6 21249265 21249388 -168030166 + MER5B DNA MER1_type 1 119 -59 5882 229 37 25 chr6 21249420 21250604 -168028950 + L1MB3 LINE L1 4055 5270 -1578 2433 140 20 8 chr6 21250604 21250997 -168028557 + L1PA15 LINE L1 5767 6164 -1 5882 229 37 25 chr6 21250997 21251633 -168027921 + L1MB3 LINE L1 5270 5897 -951 344 198 19 3 chr6 21251633 21251850 -168027704 + AluJo SINE Alu 1 289 -13 4621 157 17 31 chr6 21251864 21252870 -168026684 + L1MB3 LINE L1 5889 6881 -4 217 167 71 0 chr6 21252890 21252932 -168026622 + MER5B DNA MER1_type 131 175 -3 411 199 333 0 chr6 21253119 21253260 -168026294 - MER5A DNA MER1_type 0 189 2 341 290 10 10 chr6 21253322 21253422 -168026132 - MIR SINE MIR -79 129 30 22 0 0 0 chr6 21253525 21253547 -168026007 + AT_rich Low_complexity Low_complexity 1 22 0 453 274 38 43 chr6 21254099 21254285 -168025269 - MIR SINE MIR -3 259 75 2190 93 49 41 chr6 21254395 21254441 -168025113 - THE1C LTR MaLR -6 369 325 2568 56 0 0 chr6 21254441 21254746 -168024808 - AluY SINE Alu -5 306 2 2190 93 49 41 chr6 21254746 21255065 -168024489 - THE1C LTR MaLR -50 325 1 959 245 37 8 chr6 21255212 21255453 -168024101 + MIR SINE MIR 15 262 0 3556 151 27 0 chr6 21257192 21257780 -168021774 - MER6A DNA MER2_type -1 604 1 434 238 119 54 chr6 21258401 21258569 -168020985 - MIR3 SINE MIR -25 183 5 224 341 8 0 chr6 21258629 21258723 -168020831 + MIR SINE MIR 53 148 -60 243 0 0 0 chr6 21259921 21259948 -168019606 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 307 224 13 0 chr6 21260951 21261027 -168018527 - MIR3 SINE MIR -7 201 125 923 284 68 65 chr6 21261740 21262327 -168017227 + MLT1L LTR MaLR 8 596 -19 2437 75 0 10 chr6 21262430 21262736 -168016818 + AluY SINE Alu 1 303 -8 1583 100 0 38 chr6 21263356 21263595 -168015959 + MER30 DNA MER1_type 1 230 0 269 286 71 0 chr6 21263664 21263734 -168015820 - L2 LINE L2 0 3272 3198 24 32 0 0 chr6 21264583 21264614 -168014940 + AT_rich Low_complexity Low_complexity 1 31 0 224 30 30 0 chr6 21265007 21265040 -168014514 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 343 292 133 10 chr6 21265995 21266190 -168013364 - LTR33A LTR ERVL -1 522 304 22 0 0 0 chr6 21267167 21267189 -168012365 + AT_rich Low_complexity Low_complexity 1 22 0 2159 110 0 0 chr6 21267272 21267586 -168011968 - AluSx SINE Alu 0 317 4 208 139 0 0 chr6 21267651 21267687 -168011867 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 422 301 83 13 chr6 21268345 21268574 -168010980 + MLT1L LTR MaLR 371 615 0 252 0 0 0 chr6 21268833 21268861 -168010693 + (TTG)n Simple_repeat Simple_repeat 2 29 0 288 0 0 0 chr6 21270169 21270201 -168009353 + (CA)n Simple_repeat Simple_repeat 2 33 0 2177 149 29 0 chr6 21271772 21272155 -168007399 + MER57A LTR ERV1 4 397 -6 219 36 0 0 chr6 21272156 21272184 -168007370 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2149 113 0 0 chr6 21272952 21273268 -168006286 + AluSx SINE Alu 1 316 0 37 32 0 16 chr6 21273325 21273343 -168006211 + AT_rich Low_complexity Low_complexity 1 18 -43 1701 167 15 18 chr6 21273343 21273673 -168005881 + L1MC1 LINE L1 6003 6331 -2 37 32 0 16 chr6 21273673 21273716 -168005838 + AT_rich Low_complexity Low_complexity 18 61 0 2347 107 3 0 chr6 21273921 21274229 -168005325 - AluSq SINE Alu -2 311 3 528 194 73 103 chr6 21274802 21274950 -168004604 + L1MC4 LINE L1 7612 7763 -279 2200 110 10 0 chr6 21274950 21275249 -168004305 - AluSq SINE Alu -11 302 1 528 194 73 103 chr6 21275249 21275429 -168004125 + L1MC4 LINE L1 7763 7930 -112 297 240 16 50 chr6 21275475 21275596 -168003958 + L1MC4 LINE L1 7926 8042 0 365 277 7 14 chr6 21275607 21275755 -168003799 + L1MC5 LINE L1 7769 7915 -46 1954 149 128 10 chr6 21275764 21276147 -168003407 + MSTA LTR MaLR 1 428 0 201 74 0 0 chr6 21276156 21276183 -168003371 + (T)n Simple_repeat Simple_repeat 1 27 0 2062 171 6 43 chr6 21276492 21276960 -168002594 + L1MB3 LINE L1 5730 6180 -3 2223 121 68 39 chr6 21277061 21277145 -168002409 + L1MA4A LINE L1 5867 5947 -356 2249 70 18 0 chr6 21277145 21277429 -168002125 + AluY SINE Alu 1 289 -22 2223 121 68 39 chr6 21277429 21277758 -168001796 + L1MA4A LINE L1 5947 6292 -11 207 0 0 0 chr6 21278288 21278311 -168001243 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2444 89 3 0 chr6 21278995 21279299 -168000255 - AluSq SINE Alu -8 305 1 261 0 0 0 chr6 21279483 21279512 -168000042 + (TG)n Simple_repeat Simple_repeat 1 29 0 199 291 154 34 chr6 21279796 21279913 -167999641 - L2 LINE L2 -4 3268 3138 1636 184 53 26 chr6 21280115 21280495 -167999059 - MLT1B LTR MaLR 0 390 1 247 311 126 29 chr6 21280579 21280785 -167998769 - L2 LINE L2 -652 2662 2437 295 320 26 57 chr6 21280845 21281012 -167998542 + MIR SINE MIR 15 176 -71 2151 101 3 3 chr6 21281346 21281634 -167997920 + AluSq SINE Alu 1 288 -25 315 321 60 30 chr6 21281652 21281820 -167997734 + L3b LINE CR1 1216 1388 -195 2027 167 0 13 chr6 21281834 21282012 -167997542 + MLT1B LTR MaLR 1 180 -210 2354 95 3 25 chr6 21282012 21282328 -167997226 + AluSp SINE Alu 1 309 -4 2027 167 0 13 chr6 21282328 21282532 -167997022 + MLT1B LTR MaLR 180 378 -12 380 20 20 0 chr6 21283401 21283450 -167996104 + (GA)n Simple_repeat Simple_repeat 1 50 0 276 296 20 0 chr6 21283639 21283737 -167995817 + MER94 DNA DNA 1 100 -34 461 263 164 84 chr6 21283760 21284174 -167995380 - L3 LINE CR1 -342 1235 789 915 276 71 0 chr6 21284271 21284510 -167995044 - MIR SINE MIR -1 261 6 1996 128 4 0 chr6 21284543 21284824 -167994730 - AluSg SINE Alu -28 282 1 224 167 45 76 chr6 21284824 21284890 -167994664 - L3 LINE CR1 -915 662 599 186 206 0 0 chr6 21284977 21285011 -167994543 - L3 LINE CR1 -1121 456 423 819 129 25 24 chr6 21285116 21285421 -167994133 + CT-rich Low_complexity Low_complexity 1 305 0 22 0 0 0 chr6 21286125 21286147 -167993407 + AT_rich Low_complexity Low_complexity 1 22 0 183 156 0 0 chr6 21286889 21286921 -167992633 + (TG)n Simple_repeat Simple_repeat 1 32 0 197 65 32 0 chr6 21287106 21287137 -167992417 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 493 242 17 42 chr6 21287328 21287448 -167992106 - L2 LINE L2 -1 3271 3155 503 229 46 8 chr6 21287880 21288011 -167991543 + MER45A DNA AcHobo 43 178 0 563 336 22 22 chr6 21288370 21288599 -167990955 + MIR SINE MIR 21 249 -13 28 0 0 0 chr6 21289460 21289488 -167990066 + AT_rich Low_complexity Low_complexity 1 28 0 287 343 116 17 chr6 21289512 21289693 -167989861 - MIR SINE MIR -45 217 19 23 0 0 0 chr6 21290860 21290883 -167988671 + AT_rich Low_complexity Low_complexity 1 23 0 771 277 81 24 chr6 21290906 21291202 -167988352 + L2 LINE L2 3000 3312 -1 285 29 0 0 chr6 21292587 21292621 -167986933 + (CA)n Simple_repeat Simple_repeat 2 35 0 200 217 22 0 chr6 21293154 21293200 -167986354 - L2 LINE L2 -5 3308 3262 216 0 0 0 chr6 21294483 21294507 -167985047 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 477 0 0 0 chr6 21294506 21294559 -167984995 + (TG)n Simple_repeat Simple_repeat 2 54 0 278 304 38 0 chr6 21295123 21295202 -167984352 - MER5A DNA MER1_type 0 189 108 1799 112 4 0 chr6 21295548 21295816 -167983738 - L1PA14 LINE L1 -2 6159 5891 277 333 10 0 chr6 21295816 21295912 -167983642 + L2 LINE L2 2461 2557 -757 638 297 50 18 chr6 21295948 21296170 -167983384 - L2 LINE L2 -422 2892 2664 2254 123 0 3 chr6 21296741 21297051 -167982503 + AluSx SINE Alu 1 309 -3 1469 112 0 42 chr6 21298274 21298488 -167981066 - AluSx SINE Alu -13 297 93 2108 20 4 0 chr6 21298505 21298750 -167980804 - L1PA3 LINE L1 -4 6151 5906 806 97 0 0 chr6 21298750 21298853 -167980701 - AluSx SINE Alu -210 103 1 195 265 118 59 chr6 21299215 21299317 -167980237 - MIR3 SINE MIR -86 122 15 195 42 0 0 chr6 21299400 21299424 -167980130 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1283 96 36 153 chr6 21299426 21299583 -167979971 - L1PA15 LINE L1 -13 6152 6045 2576 48 3 0 chr6 21299583 21299892 -167979662 - AluY SINE Alu -1 310 1 1283 96 36 153 chr6 21299892 21300035 -167979519 - L1PA15 LINE L1 -120 6045 5887 359 316 142 9 chr6 21300618 21300830 -167978724 - MIR SINE MIR -19 243 4 2108 106 0 7 chr6 21301569 21301883 -167977671 + AluSx SINE Alu 1 312 0 197 211 18 0 chr6 21301972 21302029 -167977525 + CT-rich Low_complexity Low_complexity 2 59 0 484 150 0 0 chr6 21302275 21302355 -167977199 - MADE1 DNA Mariner 0 80 1 391 190 0 20 chr6 21303078 21303178 -167976376 + GA-rich Low_complexity Low_complexity 2 99 0 243 264 0 0 chr6 21303178 21303231 -167976323 + A-rich Low_complexity Low_complexity 1 53 0 2025 147 0 7 chr6 21303607 21303913 -167975641 - AluSx SINE Alu 0 312 9 21 0 0 0 chr6 21304209 21304230 -167975324 + AT_rich Low_complexity Low_complexity 1 21 0 394 278 70 48 chr6 21305138 21305352 -167974202 - MIR SINE MIR -43 219 8 513 319 21 48 chr6 21306324 21306759 -167972795 - L1MEc LINE L1 -4745 1651 1229 823 214 0 18 chr6 21307119 21307287 -167972267 - FRAM SINE Alu 0 166 2 272 291 12 35 chr6 21307925 21308011 -167971543 - MIR3 SINE MIR -4 204 121 2459 90 0 0 chr6 21308206 21308518 -167971036 + AluSx SINE Alu 1 312 0 1600 234 55 39 chr6 21308664 21309360 -167970194 + L1MB8 LINE L1 875 1581 -4961 397 211 11 11 chr6 21309349 21309444 -167970110 + L1MB8 LINE L1 1987 2081 -4565 * 1732 248 45 41 chr6 21309478 21309560 -167969994 + L1MB8 LINE L1 3192 3272 -3372 2121 107 0 10 chr6 21309560 21309851 -167969703 + AluY SINE Alu 6 293 -18 1732 248 45 41 chr6 21309851 21310618 -167968936 + L1MB8 LINE L1 3272 4044 -2600 2075 118 3 0 chr6 21310637 21311104 -167968450 + AluY SINE Alu 23 490 0 879 183 0 6 chr6 21310924 21311140 -167968414 + GA-rich Low_complexity Low_complexity 1 215 0 3153 212 57 88 chr6 21311140 21311551 -167968003 + L1MB8 LINE L1 4060 4482 -2162 760 102 0 0 chr6 21311551 21311649 -167967905 + AluY SINE Alu 7 104 -207 3153 212 57 88 chr6 21311649 21312411 -167967143 + L1MB8 LINE L1 4482 5291 -1353 1328 244 13 16 chr6 21312413 21312724 -167966830 + Tigger5 DNA MER2_type 1 310 -2013 397 176 0 35 chr6 21312706 21312791 -167966763 + Tigger5 DNA MER2_type 2242 2323 0 * 1339 239 84 9 chr6 21312797 21313236 -167966318 + L1MB8 LINE L1 5298 5769 -875 511 286 0 28 chr6 21313240 21313608 -167965946 + (CATATA)n Simple_repeat Simple_repeat 1 357 0 436 268 0 91 chr6 21313564 21313762 -167965792 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 261 174 59 0 chr6 21313775 21313840 -167965714 + L1MB8 LINE L1 5754 5826 -846 2516 74 0 0 chr6 21313840 21314151 -167965403 + AluY SINE Alu 1 311 0 3220 224 43 3 chr6 21315195 21316045 -167963509 + L1MB8 LINE L1 5784 6667 -9 1590 235 24 17 chr6 21316047 21316460 -167963094 - LTR52 LTR ERVL -3 418 3 2179 136 3 0 chr6 21316745 21317055 -167962499 + AluSx SINE Alu 1 311 -1 209 276 69 0 chr6 21317806 21317864 -167961690 + MIR SINE MIR 92 153 -109 228 215 165 0 chr6 21318446 21318525 -167961029 + MLT1L LTR MaLR 507 598 -17 236 293 71 20 chr6 21318787 21318886 -167960668 + L3 LINE CR1 1300 1403 -174 2188 121 0 3 chr6 21319516 21319823 -167959731 + AluSq SINE Alu 1 306 -7 541 223 127 91 chr6 21319848 21319938 -167959616 - MIR SINE MIR -53 209 124 2170 109 0 0 chr6 21319938 21320242 -167959312 + L1PA11 LINE L1 5871 6174 0 541 223 127 91 chr6 21320242 21320348 -167959206 - MIR SINE MIR -138 124 6 257 398 6 12 chr6 21321019 21321180 -167958374 - L3b LINE CR1 -135 1448 1289 220 326 32 11 chr6 21321238 21321333 -167958221 + MIR3 SINE MIR 109 205 -3 2233 137 8 30 chr6 21321960 21322332 -167957222 - THE1B LTR MaLR 0 364 1 336 298 138 58 chr6 21324282 21324507 -167955047 - MIR SINE MIR 0 262 20 226 369 70 5 chr6 21324763 21324977 -167954577 - MLT1J1 LTR MaLR -126 320 93 379 346 14 13 chr6 21325221 21325432 -167954122 + MIR SINE MIR 9 217 -45 200 263 0 0 chr6 21325821 21325859 -167953695 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 255 241 13 13 chr6 21326192 21326271 -167953283 + L1MD2 LINE L1 6269 6347 -12 372 141 20 10 chr6 21326275 21326374 -167953180 + (TA)n Simple_repeat Simple_repeat 1 100 0 2088 117 0 20 chr6 21326377 21326675 -167952879 - AluSx SINE Alu -20 292 1 180 300 0 0 chr6 21327066 21327116 -167952438 - L2 LINE L2 -9 3263 3214 30 27 0 0 chr6 21327954 21327991 -167951563 + AT_rich Low_complexity Low_complexity 1 37 0 869 294 128 27 chr6 21328390 21328992 -167950562 + MLT2F LTR ERVL 1 663 0 246 345 150 0 chr6 21329317 21329430 -167950124 - MIR SINE MIR -61 147 18 223 250 0 0 chr6 21329912 21329964 -167949590 + A-rich Low_complexity Low_complexity 4 55 0 870 283 92 27 chr6 21329979 21330392 -167949162 - LTR16A LTR ERVL -2 455 16 1210 368 57 15 chr6 21330627 21331722 -167947832 - HERV16 LTR ERVL -480 5284 4144 1833 294 69 35 chr6 21331728 21332507 -167947047 - HERV16 LTR ERVL -2619 2377 1572 2718 316 50 8 chr6 21332706 21333874 -167945680 - HERV16 LTR ERVL -3710 1286 70 682 350 18 35 chr6 21333997 21334067 -167945487 - LTR16A LTR ERVL -6 444 374 1105 280 30 59 chr6 21334067 21334542 -167945012 + LTR16B LTR ERVL 4 464 0 682 350 18 35 chr6 21334542 21334871 -167944683 - LTR16A LTR ERVL -76 374 52 244 319 98 12 chr6 21335377 21335540 -167944014 - MIR SINE MIR -52 210 34 210 71 0 0 chr6 21337197 21337225 -167942329 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 488 298 29 35 chr6 21337695 21337866 -167941688 - MIR SINE MIR -18 244 75 254 248 67 60 chr6 21338364 21338513 -167941041 + HERV16 LTR ERVL 1585 1734 -3262 * 1401 311 32 28 chr6 21338510 21339398 -167940156 + HERV16 LTR ERVL 2524 3423 -1930 759 307 62 42 chr6 21339427 21339994 -167939560 + HERV16 LTR ERVL 3211 3788 -1208 560 319 53 43 chr6 21340116 21340566 -167938988 + HERV16 LTR ERVL 4152 4384 -612 1112 294 23 37 chr6 21341353 21341782 -167937772 + LTR16B LTR ERVL 34 456 -8 2384 86 3 0 chr6 21342425 21342729 -167936825 + AluSp SINE Alu 1 305 -8 338 236 64 29 chr6 21343097 21343237 -167936317 + MLT1H LTR MaLR 405 549 0 588 312 9 0 chr6 21343462 21343683 -167935871 - L1MC4a LINE L1 -1890 5918 5696 341 311 94 15 chr6 21345709 21345901 -167933653 - MIR SINE MIR -7 255 34 2446 72 3 13 chr6 21346744 21347050 -167932504 - AluSp SINE Alu 0 313 11 268 301 96 37 chr6 21347132 21347268 -167932286 - MIR3 SINE MIR -61 147 4 4564 150 39 21 chr6 21349543 21350512 -167929042 + L1PB3 LINE L1 4522 5529 -625 2126 147 0 0 chr6 21350512 21350811 -167928743 + AluSq SINE Alu 1 299 -14 4564 150 39 21 chr6 21350811 21351442 -167928112 + L1PB3 LINE L1 5529 6147 -7 348 125 16 0 chr6 21352242 21352306 -167927248 + MADE1 DNA Mariner 1 65 -15 191 323 37 49 chr6 21353619 21353783 -167925771 + MIR SINE MIR 99 260 -2 316 308 0 0 chr6 21354442 21354546 -167925008 + (TA)n Simple_repeat Simple_repeat 2 105 0 2768 237 68 6 chr6 21354612 21355635 -167923919 - L1ME2 LINE L1 -39 6125 5035 1250 242 31 31 chr6 21355645 21356124 -167923430 - L1ME2 LINE L1 -1286 4860 4382 1651 172 9 46 chr6 21357587 21357936 -167921618 - MLT1A1 LTR MaLR 0 365 30 4917 105 3 16 chr6 21357938 21358616 -167920938 - L1PA11 LINE L1 -14 6160 5492 2486 81 0 0 chr6 21358616 21358924 -167920630 - AluY SINE Alu -3 308 1 4917 105 3 16 chr6 21358924 21359006 -167920548 - L1PA11 LINE L1 -682 5492 5410 233 163 0 20 chr6 21359006 21359055 -167920499 - MLT1A1 LTR MaLR -319 55 8 188 146 0 21 chr6 21359895 21359943 -167919611 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 670 180 8 0 chr6 21360295 21360417 -167919137 - Tigger1 DNA MER2_type 0 2418 2296 4315 138 26 0 chr6 21360417 21361115 -167918439 + L1PA16 LINE L1 5442 6157 -9 8525 128 28 10 chr6 21361149 21361850 -167917704 - Tigger1 DNA MER2_type -980 1438 751 2023 129 0 7 chr6 21361850 21362145 -167917409 + AluSg SINE Alu 3 295 -15 8525 128 28 10 chr6 21362145 21362854 -167916700 - Tigger1 DNA MER2_type -1667 751 2 413 333 22 7 chr6 21362981 21363116 -167916438 + MIR3 SINE MIR 6 142 -66 552 205 0 0 chr6 21363585 21363697 -167915857 + MER45B DNA AcHobo 61 172 -868 933 232 82 38 chr6 21363697 21364038 -167915516 - MLT1A1 LTR MaLR 0 365 10 2005 210 48 42 chr6 21364051 21364594 -167914960 + MER45B DNA AcHobo 173 718 -322 285 250 230 0 chr6 21364602 21364702 -167914852 + MER5A DNA MER1_type 64 186 -3 231 170 0 0 chr6 21364740 21364787 -167914767 + GA-rich Low_complexity Low_complexity 1 47 0 2640 45 0 3 chr6 21365482 21365794 -167913760 - AluY SINE Alu 0 311 1 233 97 81 0 chr6 21366867 21366929 -167912625 + (TA)n Simple_repeat Simple_repeat 2 68 0 37010 73 8 1 chr6 21366979 21371919 -167907635 - HERVL-A1 LTR ERVL -682 4972 1 294 48 0 24 chr6 21371919 21371961 -167907593 - MLT2A1 LTR ERVL 0 453 413 404 24 72 12 chr6 21371963 21372046 -167907508 + (TA)n Simple_repeat Simple_repeat 1 88 0 1527 80 46 8 chr6 21372071 21372308 -167907246 - MLT2A1 LTR ERVL -198 246 1 197 388 140 9 chr6 21373168 21373604 -167905950 + L2 LINE L2 1972 2464 -850 * 399 341 30 0 chr6 21373601 21373733 -167905821 + L2 LINE L2 3137 3272 0 221 308 113 15 chr6 21374268 21374401 -167905153 + L2 LINE L2 3153 3298 -15 6676 111 13 25 chr6 21374548 21375850 -167903704 + L1MA1 LINE L1 5016 6301 -1 431 309 73 30 chr6 21377284 21377517 -167902037 - MIR SINE MIR 0 262 20 2232 105 7 0 chr6 21377567 21377861 -167901693 - AluSg SINE Alu -14 296 1 291 362 9 0 chr6 21378341 21378446 -167901108 - L2 LINE L2 -16 3297 3192 443 235 279 7 chr6 21379766 21380046 -167899508 - MLT1G3 LTR MaLR -7 535 142 1376 186 16 8 chr6 21380046 21380299 -167899255 - MLT1E1 LTR MaLR 0 654 400 2207 102 0 0 chr6 21380388 21380671 -167898883 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr6 21380675 21380698 -167898856 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3211 182 50 47 chr6 21380701 21380842 -167898712 - L1MB7 LINE L1 -11 6173 6034 2009 147 0 13 chr6 21380842 21381142 -167898412 - AluSx SINE Alu -16 296 1 3211 182 50 47 chr6 21381142 21382259 -167897295 - L1MB7 LINE L1 -150 6034 4905 806 226 53 23 chr6 21382260 21382525 -167897029 - MLT1E1 LTR MaLR -379 275 3 281 356 19 6 chr6 21382541 21382701 -167896853 - MLT1G3 LTR MaLR -393 162 1 2013 157 0 3 chr6 21382741 21383047 -167896507 - AluSx SINE Alu -3 309 5 26 0 0 0 chr6 21383672 21383698 -167895856 + AT_rich Low_complexity Low_complexity 1 26 0 290 165 0 35 chr6 21383778 21383863 -167895691 + CT-rich Low_complexity Low_complexity 1 82 0 221 241 0 0 chr6 21384021 21384079 -167895475 + A-rich Low_complexity Low_complexity 5 62 0 10902 164 20 27 chr6 21384373 21387084 -167892470 - L1P4 LINE L1 -359 5809 3126 2032 127 0 0 chr6 21387084 21387359 -167892195 - AluSq SINE Alu -38 275 1 10902 164 20 27 chr6 21387359 21387565 -167891989 - L1P4 LINE L1 -3042 3126 2920 2059 39 47 4 chr6 21387565 21387819 -167891735 + AluY SINE Alu 34 298 -13 1716 207 10 0 chr6 21388250 21388554 -167891000 - AluJb SINE Alu -5 307 1 2120 4 0 0 chr6 21388564 21388790 -167890764 - AluYa5 SINE Alu -10 301 76 366 312 7 36 chr6 21388790 21388928 -167890626 - MIR SINE MIR -63 199 66 1166 265 32 40 chr6 21388949 21389545 -167890009 - Charlie7 DNA MER1_type -33 2579 1989 1902 233 106 106 chr6 21389545 21390336 -167889218 + L1MCa LINE L1 1 790 -5255 2088 160 14 8 chr6 21390336 21390699 -167888855 - MLT1A1 LTR MaLR 0 365 1 1902 233 106 106 chr6 21390699 21390830 -167888724 + L1MCa LINE L1 790 919 -5126 4292 118 5 2 chr6 21390830 21391440 -167888114 - LTR9 LTR ERV1 0 612 1 1902 233 106 106 chr6 21391440 21391717 -167887837 + L1MCa LINE L1 919 1173 -4872 2147 130 0 25 chr6 21392208 21392524 -167887030 + AluSx SINE Alu 1 308 -4 319 247 0 0 chr6 21392687 21392760 -167886794 + MLT1I LTR MaLR 71 143 -266 358 250 19 10 chr6 21392882 21392986 -167886568 + MLT1I LTR MaLR 305 409 0 341 48 0 0 chr6 21394084 21394126 -167885428 - L1PA7 LINE L1 -11 6143 6102 5027 63 2 3 chr6 21394150 21394788 -167884766 - L1PA7 LINE L1 -11 6143 5507 280 295 158 86 chr6 21395091 21395325 -167884229 - L2 LINE L2 -27 3245 2995 23 0 0 0 chr6 21395383 21395406 -167884148 + AT_rich Low_complexity Low_complexity 1 23 0 874 54 9 0 chr6 21395407 21395519 -167884035 - L1PA5 LINE L1 -9 6145 6033 2469 52 0 0 chr6 21395519 21395843 -167883711 + L1PA4 LINE L1 5646 5969 -186 451 206 14 99 chr6 21395904 21396045 -167883509 + MER3 DNA MER1_type 1 129 -80 185 62 0 31 chr6 21396045 21396077 -167883477 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 317 319 66 30 chr6 21396184 21396350 -167883204 - L2 LINE L2 -508 2806 2635 2250 105 0 0 chr6 21399312 21399597 -167879957 + AluSg SINE Alu 1 285 -25 1512 49 25 0 chr6 21399621 21399824 -167879730 - L1PA10 LINE L1 -187 5981 5774 198 0 0 0 chr6 21399835 21399857 -167879697 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 27 0 0 0 chr6 21399997 21400024 -167879530 + AT_rich Low_complexity Low_complexity 1 27 0 1734 168 4 4 chr6 21400028 21400308 -167879246 + AluJb SINE Alu 6 285 -27 279 300 73 0 chr6 21400517 21400667 -167878887 - L1ME4a LINE L1 -81 6040 5880 1404 289 162 11 chr6 21400855 21401514 -167878040 - L2 LINE L2 0 3313 2755 2390 70 0 13 chr6 21401514 21401816 -167877738 + AluY SINE Alu 1 298 -13 1404 289 162 11 chr6 21401816 21401955 -167877599 - L2 LINE L2 -558 2755 2638 1974 164 65 25 chr6 21401955 21402357 -167877197 - MER47B DNA MER2_type 0 418 1 1404 289 162 11 chr6 21402357 21402543 -167877011 - L2 LINE L2 -675 2638 2172 659 66 0 11 chr6 21402820 21402911 -167876643 + 5S rRNA rRNA 1 90 -31 23 86 0 0 chr6 21404222 21404280 -167875274 + AT_rich Low_complexity Low_complexity 1 58 0 293 322 34 7 chr6 21404401 21404547 -167875007 - MIR SINE MIR -46 216 67 1551 207 21 3 chr6 21404551 21404880 -167874674 - MER58B DNA MER1_type -6 335 1 3237 198 59 36 chr6 21456068 21457004 -167822550 - L1MB2 LINE L1 -18 6389 5434 6404 226 65 24 chr6 21457024 21457815 -167821739 - L1MB2 LINE L1 -1073 5309 4552 321 26 0 0 chr6 21457815 21457853 -167821701 + (TG)n Simple_repeat Simple_repeat 2 39 0 6404 226 65 24 chr6 21457853 21459121 -167820433 - L1MB2 LINE L1 -1830 4552 3164 6700 192 17 4 chr6 21459123 21461191 -167818363 - L1PA13 LINE L1 0 6814 4714 1693 104 0 0 chr6 21461191 21461412 -167818142 - AluY SINE Alu -25 286 66 6700 192 17 4 chr6 21461412 21461482 -167818072 - L1PA13 LINE L1 -2100 4714 4646 235 100 25 0 chr6 21461482 21461522 -167818032 - MLT2A1 LTR ERVL -7 437 397 192 200 0 0 chr6 21461522 21461562 -167817992 + (TG)n Simple_repeat Simple_repeat 2 41 0 2893 78 4 13 chr6 21461562 21461977 -167817577 - MLT2A1 LTR ERVL -40 480 1 11264 204 16 22 chr6 21461978 21462464 -167817090 - L1PA13 LINE L1 -2141 4656 4169 186 43 0 0 chr6 21462464 21462487 -167817067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11264 204 16 22 chr6 21462487 21465572 -167813982 - L1PA13 LINE L1 -2628 4169 1105 1045 255 10 7 chr6 21465580 21465882 -167813672 - L1MB2 LINE L1 -3220 3162 2860 910 205 100 0 chr6 21465882 21466072 -167813482 + Tigger7 DNA MER2_type 1 209 -496 359 132 51 139 chr6 21466080 21466238 -167813316 - L1MB2 LINE L1 -3850 2532 2378 385 178 0 14 chr6 21466238 21466311 -167813243 + Tigger2 DNA MER2_type 1 72 -2646 * 1268 127 9 9 chr6 21466298 21466519 -167813035 + Tigger2 DNA MER2_type 2273 2493 -225 389 237 0 42 chr6 21466623 21466741 -167812813 - L1 LINE L1 -1257 5125 5013 424 107 12 60 chr6 21466847 21466931 -167812623 - L1P LINE L1 -1370 4776 4697 1028 215 0 0 chr6 21466945 21467164 -167812390 - L1 LINE L1 -1832 4550 4332 1085 196 13 0 chr6 21467165 21467394 -167812160 + Tigger2 DNA MER2_type 2486 2717 -1 2133 262 76 13 chr6 21467395 21468064 -167811490 - L1 LINE L1 -4005 2377 1532 222 37 0 0 chr6 21468064 21468091 -167811463 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 2133 262 76 13 chr6 21468091 21468488 -167811066 - L1 LINE L1 -4850 1532 1161 476 179 41 123 chr6 21468506 21468701 -167810853 + MER58A DNA MER1_type 46 224 0 818 154 0 0 chr6 21468792 21468922 -167810632 + MER1A DNA MER1_type 1 130 -397 1709 130 28 1 chr6 21468924 21469243 -167810311 + THE1B LTR MaLR 3 364 0 10535 101 10 61 chr6 21469243 21470908 -167808646 + THE1B-int LTR MaLR 1 1580 0 1936 148 96 0 chr6 21470908 21471240 -167808314 + THE1B LTR MaLR 1 364 0 2738 117 8 0 chr6 21471240 21471641 -167807913 + MER1A DNA MER1_type 126 529 0 221 377 66 0 chr6 21472276 21472398 -167807156 + MIR3 SINE MIR 43 172 -36 47 53 0 0 chr6 21472715 21472790 -167806764 + AT_rich Low_complexity Low_complexity 1 75 0 346 347 133 28 chr6 21473260 21473782 -167805772 + L2 LINE L2 2724 3313 0 21 36 0 0 chr6 21476007 21476035 -167803519 + AT_rich Low_complexity Low_complexity 1 28 0 2135 117 0 0 chr6 21476072 21476381 -167803173 + AluSx SINE Alu 1 309 0 26 0 0 0 chr6 21476412 21476438 -167803116 + AT_rich Low_complexity Low_complexity 1 26 0 1274 198 124 21 chr6 21476788 21477127 -167802427 + MLT1A2 LTR MaLR 1 374 0 1039 243 18 5 chr6 21478310 21478528 -167801026 + MER58A DNA MER1_type 1 221 -3 5892 99 9 9 chr6 21479890 21480232 -167799322 - L1PB1 LINE L1 -8 6143 5802 317 62 21 0 chr6 21480232 21480280 -167799274 + (TA)n Simple_repeat Simple_repeat 1 49 0 5892 99 9 9 chr6 21480280 21481031 -167798523 - L1PB1 LINE L1 -349 5802 5038 2217 102 3 0 chr6 21481031 21481324 -167798230 - AluSg SINE Alu -11 299 6 5892 99 9 9 chr6 21481324 21481386 -167798168 - L1PB1 LINE L1 -1112 5039 4978 373 310 133 19 chr6 21481442 21481600 -167797954 - MIR SINE MIR -58 204 29 2064 142 3 0 chr6 21481918 21482213 -167797341 + AluSx SINE Alu 1 296 -16 183 355 128 28 chr6 21482279 21482420 -167797134 - L2 LINE L2 -1 3271 3117 2136 102 7 0 chr6 21482424 21482734 -167796820 - AluSx SINE Alu 0 312 1 410 163 0 0 chr6 21482746 21482826 -167796728 + L1MB3 LINE L1 6102 6181 -2 318 182 68 11 chr6 21483315 21483403 -167796151 + MER94 DNA DNA 1 93 -41 189 0 0 0 chr6 21483518 21483539 -167796015 + (TG)n Simple_repeat Simple_repeat 2 22 0 204 299 37 28 chr6 21484420 21484527 -167795027 + MIR SINE MIR 63 170 -92 484 249 107 3 chr6 21484602 21484742 -167794812 + MIR3 SINE MIR 59 208 0 213 39 0 0 chr6 21485190 21485216 -167794338 + (CA)n Simple_repeat Simple_repeat 1 26 0 3011 139 24 71 chr6 21485242 21485823 -167793731 + MLT2B3 LTR ERVL 1 554 0 21 0 0 0 chr6 21485911 21485932 -167793622 + AT_rich Low_complexity Low_complexity 1 21 0 266 308 110 14 chr6 21486332 21486478 -167793076 - L3b LINE CR1 -207 1376 1217 2329 106 3 0 chr6 21486638 21486940 -167792614 + AluSg SINE Alu 1 303 -7 1658 165 73 12 chr6 21487109 21487449 -167792105 + MER46B DNA MER2_type 1 236 0 305 267 38 30 chr6 21488933 21489064 -167790490 + MER94 DNA DNA 1 132 -2 2110 92 11 4 chr6 21489694 21489967 -167789587 + AluSq SINE Alu 23 297 -16 2333 92 0 3 chr6 21490175 21490470 -167789084 + AluSq SINE Alu 1 294 -19 233 224 0 0 chr6 21490727 21490776 -167788778 + L2 LINE L2 3262 3310 -3 205 310 52 60 chr6 21491636 21491752 -167787802 - MIR3 SINE MIR -91 117 3 15295 92 14 16 chr6 21493335 21496176 -167783378 + HERVH LTR ERV1 25 2984 -4729 6034 74 1 2 chr6 21496173 21497028 -167782526 + HERVH LTR ERV1 3140 3993 -3720 * 4020 145 3 3 chr6 21497030 21497692 -167781862 + HERVH LTR ERV1 4488 5149 -2564 1331 121 23 0 chr6 21497693 21497908 -167781646 + HERVH LTR ERV1 5600 5819 -1894 2196 106 48 13 chr6 21497908 21498285 -167781269 + HERVH LTR ERV1 7324 7713 0 2526 87 119 5 chr6 21498285 21498687 -167780867 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr6 21499391 21499412 -167780142 + AT_rich Low_complexity Low_complexity 1 21 0 2136 89 7 0 chr6 21500709 21500989 -167778565 + AluSp SINE Alu 13 294 -19 590 250 49 12 chr6 21501247 21501411 -167778143 - MIR SINE MIR -80 182 13 200 309 22 81 chr6 21501496 21501719 -167777835 - L2 LINE L2 -817 2497 2288 281 279 0 67 chr6 21502455 21502559 -167776995 + MER102b DNA MER1_type 236 332 -9 720 235 118 5 chr6 21502617 21502804 -167776750 - MLT1D LTR MaLR 0 505 298 279 0 0 0 chr6 21502880 21502911 -167776643 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 311 131 18 chr6 21503046 21503268 -167776286 + L2 LINE L2 2033 2279 -1035 615 216 0 0 chr6 21503268 21503314 -167776240 + MER3 DNA MER1_type 2 47 -162 314 194 355 0 chr6 21503314 21503438 -167776116 - MER3 DNA MER1_type 0 209 42 234 317 71 107 chr6 21503490 21503771 -167775783 + L2 LINE L2 2963 3233 -39 227 184 0 0 chr6 21505315 21505364 -167774190 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 323 221 142 31 chr6 21507067 21507194 -167772360 + MLT1H LTR MaLR 409 549 0 425 114 0 10 chr6 21507626 21507872 -167771682 + AluSx SINE Alu 1 298 -12 184 354 31 21 chr6 21508017 21508113 -167771441 + MIR SINE MIR 5 101 -161 233 220 0 0 chr6 21508185 21508235 -167771319 + (CAT)n Simple_repeat Simple_repeat 1 50 0 2330 99 3 0 chr6 21509422 21509726 -167769828 + AluSx SINE Alu 1 305 -7 252 402 49 49 chr6 21509914 21510160 -167769394 - L2 LINE L2 0 3272 3027 2416 44 17 10 chr6 21510757 21511053 -167768501 + AluY SINE Alu 1 298 -13 329 359 32 19 chr6 21511357 21511513 -167768041 + MIR3 SINE MIR 37 194 -14 21 0 0 0 chr6 21512611 21512632 -167766922 + AT_rich Low_complexity Low_complexity 1 21 0 1617 183 17 3 chr6 21513325 21513614 -167765940 + AluJo SINE Alu 7 299 -13 2275 114 0 7 chr6 21514335 21514642 -167764912 + AluSx SINE Alu 1 305 -7 202 343 70 47 chr6 21515139 21515311 -167764243 - L2 LINE L2 -185 3087 2912 337 331 135 0 chr6 21515404 21515537 -167764017 + MIR3 SINE MIR 35 185 -23 257 150 0 67 chr6 21515748 21515761 -167763793 - MLT2B1 LTR ERVL 0 520 508 1788 137 68 44 chr6 21515761 21516127 -167763427 + THE1C LTR MaLR 1 375 0 257 150 0 67 chr6 21516127 21516173 -167763381 - MLT2B1 LTR ERVL -12 508 465 339 272 0 22 chr6 21516209 21516301 -167763253 - L1MC4 LINE L1 -1339 6703 6614 326 337 0 0 chr6 21516223 21516318 -167763236 + L1MC4 LINE L1 6614 6708 -1334 * 1253 201 179 128 chr6 21516347 21516800 -167762754 - MLT2B3 LTR ERVL -30 524 1 193 317 77 44 chr6 21516866 21517049 -167762505 + L2 LINE L2 1748 1936 -1378 477 0 0 0 chr6 21517315 21517368 -167762186 + (CAATT)n Simple_repeat Simple_repeat 1 53 0 254 176 39 0 chr6 21517371 21517422 -167762132 - MER21B LTR ERV1 -197 666 614 2393 85 31 8 chr6 21517502 21517855 -167761699 - L1P4 LINE L1 -536 5632 5272 209 326 35 12 chr6 21517991 21518077 -167761477 + MIR SINE MIR 31 118 -90 24 32 0 0 chr6 21518123 21518154 -167761400 + AT_rich Low_complexity Low_complexity 1 31 0 256 322 78 0 chr6 21518218 21518308 -167761246 + L2 LINE L2 3173 3269 -3 249 33 0 0 chr6 21518613 21518643 -167760911 + (TG)n Simple_repeat Simple_repeat 2 31 0 387 320 39 19 chr6 21521133 21521289 -167758265 - MIR3 SINE MIR -11 197 39 245 356 0 19 chr6 21521669 21521773 -167757781 - MIR SINE MIR -142 120 19 255 61 0 0 chr6 21521779 21521812 -167757742 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 635 293 72 31 chr6 21521812 21522130 -167757424 - L2 LINE L2 -13 3300 2970 223 321 116 9 chr6 21522147 21522259 -167757295 - MIR3 SINE MIR -81 127 4 822 254 12 0 chr6 21523131 21523304 -167756250 - MER5A DNA MER1_type -6 183 9 189 0 0 0 chr6 21524689 21524710 -167754844 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 302 0 0 26 chr6 21526343 21526382 -167753172 + (TG)n Simple_repeat Simple_repeat 1 38 0 247 245 0 0 chr6 21526768 21526817 -167752737 + MIR SINE MIR 214 262 0 * 305 322 0 49 chr6 21526811 21526954 -167752600 + L2 LINE L2 3178 3313 0 21 57 0 0 chr6 21526960 21526995 -167752559 + AT_rich Low_complexity Low_complexity 1 35 0 654 276 74 47 chr6 21527861 21528376 -167751178 + L1MEd LINE L1 728 1256 -4863 1017 218 53 84 chr6 21528912 21529292 -167750262 - MLT1A2 LTR MaLR -6 368 1 1520 213 33 96 chr6 21529292 21529460 -167750094 - MLT1A2-int LTR MaLR 0 1735 1558 7435 41 0 2 chr6 21529460 21530791 -167748763 + L1PA5 LINE L1 4825 6154 0 1520 213 33 96 chr6 21530791 21531072 -167748482 - MLT1A2-int LTR MaLR -177 1558 1314 2289 169 20 60 chr6 21531075 21531573 -167747981 - MER66B LTR ERV1 0 486 9 1118 176 126 50 chr6 21531697 21531975 -167747579 - MLT1A2-int LTR MaLR -1072 299 1 287 105 0 35 chr6 21531977 21532034 -167747520 - MLT2B1 LTR ERVL -2 518 464 258 192 0 0 chr6 21532035 21532087 -167747467 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 1191 243 137 44 chr6 21532087 21532116 -167747438 - MLT2B1 LTR ERVL -26 494 469 15604 141 41 14 chr6 21532116 21534758 -167744796 + Tigger2 DNA MER2_type 3 2717 -1 1191 243 137 44 chr6 21534758 21535180 -167744374 - MLT2B1 LTR ERVL -51 469 1 1528 311 46 52 chr6 21535375 21536790 -167742764 + L1M4 LINE L1 3509 4915 -1231 517 294 72 43 chr6 21536798 21537287 -167742267 + L1MEd LINE L1 987 1588 -902 449 262 68 128 chr6 21537632 21537994 -167741560 + L1MEd LINE L1 2767 3149 -2980 4540 71 3 0 chr6 21537994 21538588 -167740966 + L1PA7 LINE L1 5558 6153 -1 449 262 68 128 chr6 21538588 21538699 -167740855 + L1MEd LINE L1 3149 3265 -2864 1857 151 0 0 chr6 21538699 21538978 -167740576 + AluSx SINE Alu 30 308 -4 449 262 68 128 chr6 21538978 21539256 -167740298 + L1MEd LINE L1 3265 3485 -2644 1929 85 0 8 chr6 21539359 21539607 -167739947 - AluSc SINE Alu -30 279 34 4934 23 0 0 chr6 21539840 21540414 -167739140 - L1PA3 LINE L1 0 6155 5582 276 154 0 0 chr6 21540606 21540658 -167738896 + GA-rich Low_complexity Low_complexity 1 52 0 2485 205 44 32 chr6 21540772 21541391 -167738163 + MLT1E2 LTR MaLR 1 626 0 782 197 0 0 chr6 21542365 21542497 -167737057 + FLAM_A SINE Alu 1 132 -1 536 158 20 0 chr6 21543282 21543383 -167736171 - L1PA11 LINE L1 -5 6169 6067 714 200 82 46 chr6 21543816 21543838 -167735716 - MER3 DNA MER1_type -5 204 184 1731 169 91 0 chr6 21543838 21544169 -167735385 + MER46B DNA MER2_type 1 236 0 714 200 82 46 chr6 21544169 21544341 -167735213 - MER3 DNA MER1_type -25 184 3 1722 109 121 8 chr6 21545351 21545640 -167733914 + AluSq SINE Alu 1 318 0 247 221 15 0 chr6 21546152 21546220 -167733334 + (TA)n Simple_repeat Simple_repeat 1 69 0 1975 130 0 4 chr6 21546236 21546512 -167733042 - AluSx SINE Alu -37 275 1 23 0 0 0 chr6 21547066 21547089 -167732465 + AT_rich Low_complexity Low_complexity 1 23 0 222 171 0 0 chr6 21547320 21547355 -167732199 - L2 LINE L2 -16 3256 3222 374 324 82 12 chr6 21547414 21547584 -167731970 - MIR SINE MIR -61 201 20 205 331 69 48 chr6 21547715 21547860 -167731694 - L2 LINE L2 -1 3312 3165 21 36 0 0 chr6 21548666 21548694 -167730860 + AT_rich Low_complexity Low_complexity 1 28 0 207 257 157 14 chr6 21549143 21549213 -167730341 + MIR3 SINE MIR 92 171 -37 26 0 0 0 chr6 21549751 21549777 -167729777 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr6 21549840 21549861 -167729693 + AT_rich Low_complexity Low_complexity 1 21 0 292 350 82 22 chr6 21551012 21551195 -167728359 - MIR SINE MIR -41 221 28 2218 102 0 0 chr6 21551196 21551524 -167728030 - AluSp SINE Alu 0 328 1 355 281 123 19 chr6 21551603 21551863 -167727691 - L1M4 LINE L1 -2171 3975 3689 399 279 23 0 chr6 21552072 21552158 -167727396 - FLAM_A SINE Alu -44 89 2 2470 55 0 0 chr6 21552166 21552456 -167727098 - AluY SINE Alu -21 290 1 240 253 27 0 chr6 21552897 21552972 -167726582 - MLT1L LTR MaLR -342 273 197 1763 152 4 4 chr6 21554720 21554989 -167724565 + AluJo SINE Alu 14 282 -30 1766 233 33 64 chr6 21556338 21556983 -167722571 - MLT1G LTR MaLR 0 590 6 331 376 91 12 chr6 21557093 21557258 -167722296 + L2 LINE L2 3090 3267 -5 247 269 154 0 chr6 21557334 21557412 -167722142 + L2 LINE L2 3212 3301 -12 555 278 94 43 chr6 21557569 21558052 -167721502 - MLT1G1 LTR MaLR -23 532 1 1786 190 84 13 chr6 21558486 21558949 -167720605 + LTR54B LTR ERV1 1 496 -2 2060 179 30 15 chr6 21559361 21559764 -167719790 - MSTB2 LTR MaLR 0 457 49 437 107 13 13 chr6 21559764 21559839 -167719715 - MSTB2 LTR MaLR -368 89 15 1749 173 23 16 chr6 21560180 21560486 -167719068 + AluJb SINE Alu 1 308 -4 918 156 20 0 chr6 21560487 21560731 -167718823 + GA-rich Low_complexity Low_complexity 1 249 0 2174 99 41 0 chr6 21560770 21561064 -167718490 - AluSx SINE Alu -6 306 1 955 89 0 0 chr6 21562018 21562141 -167717413 + AluSg/x SINE Alu 165 287 -25 1982 185 17 0 chr6 21562204 21562561 -167716993 - MLT2D LTR ERVL -48 366 4 188 318 0 30 chr6 21563696 21563762 -167715792 - MIR3 SINE MIR -38 170 107 495 360 75 0 chr6 21565216 21565402 -167714152 - MIR SINE MIR -16 246 47 477 84 0 0 chr6 21567968 21568039 -167711515 + (TA)n Simple_repeat Simple_repeat 1 71 0 11815 207 43 40 chr6 21568094 21570104 -167709450 + L1MA4A LINE L1 10 2014 -4991 718 112 0 0 chr6 21570104 21570211 -167709343 + L1PA11 LINE L1 6067 6173 -1 11815 207 43 40 chr6 21570211 21572545 -167707009 + L1MA4A LINE L1 2014 4342 -2663 2316 113 0 0 chr6 21572545 21572854 -167706700 - AluSg SINE Alu 0 310 2 11815 207 43 40 chr6 21572854 21574475 -167705079 + L1MA4A LINE L1 4342 5958 -1047 25280 42 44 0 chr6 21574475 21578363 -167701191 + L1PA5 LINE L1 2212 6146 -8 11815 207 43 40 chr6 21578363 21579211 -167700343 + L1MA4A LINE L1 5958 6881 -124 2379 61 0 10 chr6 21579211 21579506 -167700048 + AluY SINE Alu 1 292 -19 11815 207 43 40 chr6 21579506 21579609 -167699945 + L1MA4A LINE L1 6881 6982 -23 437 279 40 52 chr6 21580112 21580363 -167699191 + L1MC/D LINE L1 39 286 -5833 616 267 135 106 chr6 21580430 21580598 -167698956 + L1MC/D LINE L1 328 490 -5629 2073 133 7 7 chr6 21580598 21580900 -167698654 + AluSx SINE Alu 1 302 -10 616 267 135 106 chr6 21580900 21581337 -167698217 + L1MC/D LINE L1 490 951 -5168 607 154 7 47 chr6 21581352 21581501 -167698053 + L1MB8 LINE L1 5733 5875 -303 580 307 74 19 chr6 21581512 21582132 -167697422 + L1MC/D LINE L1 946 1628 -4682 649 224 6 6 chr6 21582779 21582953 -167696601 + L1MC/D LINE L1 4422 4595 -1534 1452 223 111 34 chr6 21582963 21583808 -167695746 + L1MC/D LINE L1 4679 5621 -751 230 282 45 27 chr6 21583856 21583966 -167695588 + L1M4 LINE L1 4860 4971 -1175 1912 136 7 14 chr6 21584512 21584807 -167694747 - AluSx SINE Alu -16 296 4 2022 156 12 6 chr6 21584861 21585207 -167694347 + MER7A DNA MER2_type 1 346 0 1506 191 35 85 chr6 21585216 21585840 -167693714 - L1MC5 LINE L1 -101 7860 7268 809 205 73 19 chr6 21585972 21586248 -167693306 - L1MC4 LINE L1 -728 7233 6959 1050 151 0 6 chr6 21586548 21586727 -167692827 + GA-rich Low_complexity Low_complexity 3 180 0 2942 53 35 0 chr6 21587855 21588231 -167691323 - L1PA7 LINE L1 -17 6137 5749 375 281 152 6 chr6 21588827 21588991 -167690563 + MLT1J LTR MaLR 55 242 -269 569 352 86 40 chr6 21589244 21589349 -167690205 + L2 LINE L2 2230 2329 -943 243 0 0 0 chr6 21589349 21589376 -167690178 + (CA)n Simple_repeat Simple_repeat 2 28 0 569 352 86 40 chr6 21589376 21590185 -167689369 + L2 LINE L2 2329 3188 -84 428 279 211 0 chr6 21590240 21590444 -167689110 - MIR SINE MIR 0 262 16 208 315 14 0 chr6 21590666 21590739 -167688815 + MER5B DNA MER1_type 26 99 -79 262 363 180 11 chr6 21590877 21591155 -167688399 - L3 LINE CR1 -1193 384 60 22 56 0 0 chr6 21591248 21591284 -167688270 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr6 21591331 21591361 -167688193 + AT_rich Low_complexity Low_complexity 1 30 0 187 313 94 16 chr6 21591547 21591611 -167687943 - MIR3 SINE MIR -125 83 15 269 275 122 38 chr6 21591737 21591868 -167687686 + MIR SINE MIR 85 226 -36 658 115 39 19 chr6 21592045 21592149 -167687405 - U6 snRNA snRNA -1 106 1 2269 121 3 0 chr6 21592612 21592918 -167686636 + AluSp SINE Alu 1 307 -6 21 0 0 0 chr6 21593115 21593136 -167686418 + AT_rich Low_complexity Low_complexity 1 21 0 437 265 30 24 chr6 21594837 21595003 -167684551 - LTR16B LTR ERVL -4 460 294 566 345 29 5 chr6 21595044 21595250 -167684304 - LTR16B LTR ERVL -239 225 15 21 89 0 0 chr6 21595407 21595463 -167684091 + AT_rich Low_complexity Low_complexity 1 56 0 356 279 192 12 chr6 21596201 21596681 -167682873 + L1ME4a LINE L1 5283 5848 -273 2192 129 132 5 chr6 21596711 21597091 -167682463 - MSTA LTR MaLR 0 428 1 2473 68 0 34 chr6 21597447 21597768 -167681786 + AluY SINE Alu 1 310 -1 228 316 157 5 chr6 21597800 21597985 -167681569 + MIR3 SINE MIR 1 212 -50 262 235 118 29 chr6 21598354 21598456 -167681098 - MIR SINE MIR -1 261 151 2269 102 3 0 chr6 21598499 21598792 -167680762 + AluSq SINE Alu 1 294 -19 1746 251 57 41 chr6 21599393 21599582 -167679972 + HsTC2a DNA Tc2 1 186 -1714 2675 52 0 0 chr6 21599582 21599891 -167679663 - AluY SINE Alu -2 309 1 1746 251 57 41 chr6 21599891 21600407 -167679147 + HsTC2a DNA Tc2 186 717 -27 2322 98 0 10 chr6 21600985 21601290 -167678264 - AluSg SINE Alu -8 302 1 24 53 0 0 chr6 21601607 21601645 -167677909 + AT_rich Low_complexity Low_complexity 1 38 0 236 333 117 17 chr6 21602036 21602156 -167677398 - MIR SINE MIR -130 132 1 1517 296 62 41 chr6 21602791 21603583 -167675971 - L1ME3A LINE L1 -256 5897 5123 2122 79 14 7 chr6 21603583 21603881 -167675673 - AluY SINE Alu 0 300 1 1517 296 62 41 chr6 21603881 21604880 -167674674 - L1ME3A LINE L1 -1030 5123 4050 2442 55 7 0 chr6 21604880 21605171 -167674383 + AluY SINE Alu 5 297 -14 1517 296 62 41 chr6 21605171 21605513 -167674041 - L1ME3A LINE L1 -2103 4050 3717 354 255 115 95 chr6 21605564 21605921 -167673633 - L1ME3A LINE L1 -2554 3575 3212 373 258 115 111 chr6 21606081 21606209 -167673345 - L1ME3A LINE L1 -3180 2949 2823 1893 158 28 0 chr6 21606209 21606500 -167673054 - AluSx SINE Alu -13 299 1 373 258 115 111 chr6 21606500 21607038 -167672516 - L1ME3A LINE L1 -3306 2823 2280 351 236 24 16 chr6 21607049 21607172 -167672382 + (TA)n Simple_repeat Simple_repeat 2 125 0 259 281 43 29 chr6 21607183 21607393 -167672161 - L1ME3A LINE L1 -4915 1395 1183 321 316 72 52 chr6 21607468 21607775 -167671779 - L1ME3A LINE L1 -5104 1015 703 297 196 213 53 chr6 21607788 21607945 -167671609 + MER34 LTR ERV1 1 162 -410 1263 161 120 20 chr6 21607952 21608251 -167671303 + MER39 LTR ERV1 379 707 0 302 250 50 40 chr6 21608267 21608367 -167671187 - L1ME3A LINE L1 -5499 620 520 879 124 73 28 chr6 21608724 21608901 -167670653 + MER53 DNA DNA 3 187 -2 407 339 24 6 chr6 21609141 21609309 -167670245 - MIR3 SINE MIR -28 180 10 25 51 0 0 chr6 21609565 21609604 -167669950 + AT_rich Low_complexity Low_complexity 1 39 0 225 311 143 8 chr6 21610515 21610634 -167668920 + L2 LINE L2 3137 3271 -1 34 42 0 0 chr6 21611390 21611438 -167668116 + AT_rich Low_complexity Low_complexity 1 48 0 2147 104 0 0 chr6 21611488 21611766 -167667788 + AluY SINE Alu 1 278 -33 1323 69 0 0 chr6 21611767 21611942 -167667612 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 416 265 66 7 chr6 21612082 21612233 -167667321 + MIR SINE MIR 103 262 0 1693 183 48 36 chr6 21613008 21613271 -167666283 - L1MB8 LINE L1 -13 6165 5892 402 69 0 0 chr6 21613271 21613329 -167666225 + (TG)n Simple_repeat Simple_repeat 1 58 0 1693 183 48 36 chr6 21613329 21613506 -167666048 - L1MB8 LINE L1 -286 5892 5719 21 36 0 0 chr6 21613873 21613901 -167665653 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 21614926 21614947 -167664607 + (TTA)n Simple_repeat Simple_repeat 2 22 0 580 211 18 0 chr6 21614950 21615064 -167664490 - AluJb SINE Alu -196 116 1 448 223 170 0 chr6 21615132 21615244 -167664310 - FLAM_A SINE Alu -2 131 1 207 191 24 0 chr6 21615506 21615548 -167664006 + CT-rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr6 21615551 21615586 -167663968 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 239 124 17 chr6 21615766 21615906 -167663648 - L1ME3A LINE L1 -264 5898 5747 1687 141 78 14 chr6 21616265 21616549 -167663005 + AluJb SINE Alu 6 307 -5 186 43 0 0 chr6 21616640 21616663 -167662891 + (TG)n Simple_repeat Simple_repeat 2 24 0 2409 100 0 0 chr6 21617825 21618135 -167661419 - AluSx SINE Alu -2 310 1 896 149 0 8 chr6 21620388 21620544 -167659010 - AluJb SINE Alu 0 309 155 234 0 0 0 chr6 21620664 21620690 -167658864 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 252 0 0 0 chr6 21620689 21620717 -167658837 + (CA)n Simple_repeat Simple_repeat 1 28 0 1495 197 13 30 chr6 21621276 21621581 -167657973 - AluJo SINE Alu -12 300 1 2388 107 0 0 chr6 21622304 21622612 -167656942 - AluSx SINE Alu -4 308 1 249 33 0 0 chr6 21622928 21622958 -167656596 + (TC)n Simple_repeat Simple_repeat 1 30 0 221 57 29 0 chr6 21623473 21623508 -167656046 + (TG)n Simple_repeat Simple_repeat 1 36 0 2273 103 0 17 chr6 21623583 21623884 -167655670 - AluSq SINE Alu -17 296 1 2357 117 10 0 chr6 21626197 21626506 -167653048 + AluSx SINE Alu 1 312 0 894 144 63 0 chr6 21627047 21627221 -167652333 + L1MA7 LINE L1 6104 6288 -3 1342 183 48 41 chr6 21627754 21628044 -167651510 - AluJo SINE Alu -20 292 1 214 282 209 9 chr6 21628268 21628378 -167651176 - MIR SINE MIR -44 218 87 258 312 118 0 chr6 21630188 21630281 -167649273 + MIR SINE MIR 49 152 -110 195 139 0 0 chr6 21631109 21631145 -167648409 + (T)n Simple_repeat Simple_repeat 1 36 0 2404 280 24 25 chr6 21631178 21631853 -167647701 + MER115 DNA AcHobo 3 676 -17 4842 112 0 0 chr6 21632076 21632753 -167646801 + L1PA13 LINE L1 5448 6124 -39 186 350 88 10 chr6 21632766 21632960 -167646594 + L2 LINE L2 2624 2832 -482 191 326 14 64 chr6 21634697 21634838 -167644716 + L2 LINE L2 2753 2886 -428 306 0 0 0 chr6 21634838 21634872 -167644682 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 527 252 91 24 chr6 21634875 21635085 -167644469 + MLT1G1 LTR MaLR 103 326 -269 701 271 21 5 chr6 21635311 21635503 -167644051 + MIR SINE MIR 53 247 -15 2335 71 0 0 chr6 21636011 21636326 -167643228 - AluY SINE Alu 0 315 1 22 0 0 0 chr6 21637308 21637330 -167642224 + AT_rich Low_complexity Low_complexity 1 22 0 404 291 122 5 chr6 21637543 21637739 -167641815 - MIR SINE MIR -15 247 29 1479 249 25 6 chr6 21637769 21638127 -167641427 - MLT1A1 LTR MaLR 0 365 1 196 346 13 13 chr6 21638447 21638525 -167641029 - MER5B DNA MER1_type -45 133 56 321 183 28 4 chr6 21638547 21638657 -167640897 - MER5A DNA MER1_type 0 189 35 238 262 47 84 chr6 21638656 21638763 -167640791 - MER5B DNA MER1_type -74 104 2 * 294 277 45 23 chr6 21638945 21639083 -167640471 + MIR3 SINE MIR 45 186 -22 349 247 160 40 chr6 21639957 21640107 -167639447 + MER5A DNA MER1_type 13 180 -9 1756 154 3 42 chr6 21640586 21640898 -167638656 - MLT1B LTR MaLR 0 390 91 416 143 0 0 chr6 21640900 21640963 -167638591 - MLT1C LTR MaLR -115 352 290 * 463 188 27 89 chr6 21640954 21641066 -167638488 - MLT1C LTR MaLR -362 105 1 381 22 0 0 chr6 21641714 21641760 -167637794 + (CA)n Simple_repeat Simple_repeat 2 47 0 4278 135 59 48 chr6 21642557 21642810 -167636744 - pTR5 LTR ERV1 -25 2212 1963 187 53 26 26 chr6 21642810 21642848 -167636706 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4278 135 59 48 chr6 21642848 21643839 -167635715 - pTR5 LTR ERV1 -274 1963 7 1982 109 18 0 chr6 21643840 21644116 -167635438 + AluSp SINE Alu 32 312 -1 906 194 184 43 chr6 21644189 21644626 -167634928 - MLT1E1 LTR MaLR -74 580 1 3633 170 32 17 chr6 21645672 21646395 -167633159 + L1MB4 LINE L1 5446 6179 -1 181 233 47 35 chr6 21646738 21646824 -167632730 + L3b LINE CR1 1146 1232 -351 263 238 70 98 chr6 21646843 21646986 -167632568 + MIR3 SINE MIR 20 158 -50 243 311 17 25 chr6 21646990 21647109 -167632445 - L2 LINE L2 0 3272 3155 226 200 30 80 chr6 21647433 21647533 -167632021 - L2 LINE L2 -656 2658 2564 234 0 0 0 chr6 21648229 21648255 -167631299 + (GA)n Simple_repeat Simple_repeat 2 27 0 207 69 0 0 chr6 21648460 21648489 -167631065 + (TG)n Simple_repeat Simple_repeat 1 29 0 368 235 101 13 chr6 21648556 21648705 -167630849 - L1ME3A LINE L1 -96 6074 5913 2661 68 0 0 chr6 21648945 21649255 -167630299 + AluSg SINE Alu 1 310 0 469 183 70 9 chr6 21649462 21649577 -167629977 - MIR SINE MIR -62 200 79 26 30 0 0 chr6 21649698 21649731 -167629823 + AT_rich Low_complexity Low_complexity 1 33 0 430 297 67 67 chr6 21649732 21650237 -167629317 - L2 LINE L2 0 3313 2809 2328 91 33 0 chr6 21651668 21652006 -167627548 - LTR12 LTR ERV1 0 714 383 3666 143 87 39 chr6 21652007 21652676 -167626878 - LTR12 LTR ERV1 -11 703 3 1737 180 7 10 chr6 21652676 21652965 -167626589 + AluJo SINE Alu 10 297 -15 1536 184 223 39 chr6 21653206 21653663 -167625891 - MLT1F LTR MaLR 0 542 2 315 71 0 0 chr6 21653668 21653710 -167625844 + (TG)n Simple_repeat Simple_repeat 2 43 0 180 375 31 10 chr6 21653926 21654022 -167625532 + L2 LINE L2 3015 3112 -160 240 35 0 0 chr6 21654277 21654306 -167625248 + (CAT)n Simple_repeat Simple_repeat 1 29 0 552 308 110 9 chr6 21655004 21655231 -167624323 - MIR SINE MIR -1 261 12 326 301 36 0 chr6 21656068 21656151 -167623403 - MIR SINE MIR -115 147 62 206 197 40 66 chr6 21657725 21657801 -167621753 - L2 LINE L2 -78 3235 3162 237 310 106 42 chr6 21657979 21658263 -167621291 - L2 LINE L2 -463 2851 2550 381 304 87 0 chr6 21658531 21658646 -167620908 + L2 LINE L2 3182 3306 -7 408 302 119 38 chr6 21658771 21659006 -167620548 - MIR SINE MIR 0 262 9 246 237 17 0 chr6 21659546 21659605 -167619949 + L2 LINE L2 3253 3312 -1 180 0 0 0 chr6 21660099 21660119 -167619435 + (T)n Simple_repeat Simple_repeat 1 20 0 293 324 114 11 chr6 21661113 21661289 -167618265 - L3b LINE CR1 -261 1322 1129 1741 171 7 32 chr6 21663218 21663528 -167616026 + AluJo SINE Alu 5 306 -6 316 354 22 58 chr6 21663870 21664096 -167615458 - MIR SINE MIR -19 243 26 2135 120 0 10 chr6 21664176 21664475 -167615079 + AluSx SINE Alu 1 296 -16 11809 42 8 0 chr6 21664481 21666707 -167612847 - L1PA6 LINE L1 0 6154 3917 2258 100 10 7 chr6 21666980 21667279 -167612275 - AluSg SINE Alu -10 300 1 1031 147 13 0 chr6 21667320 21667476 -167612078 + AluSg/x SINE Alu 135 292 -20 4499 194 27 20 chr6 21667615 21668208 -167611346 + MER45B DNA AcHobo 37 641 -940 1970 158 6 3 chr6 21668208 21668519 -167611035 + AluSx SINE Alu 1 312 0 4499 194 27 20 chr6 21668519 21668922 -167610632 + MER45B DNA AcHobo 641 1040 0 735 268 128 38 chr6 21669362 21669839 -167609715 + HAL1 LINE L1 1984 2503 -4 278 294 220 67 chr6 21669862 21670280 -167609274 - LTR67 LTR ERVL -74 483 2 246 62 0 0 chr6 21670404 21670436 -167609118 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 28 0 0 chr6 21670611 21670647 -167608907 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 7161 40 10 1 chr6 21671509 21672485 -167607069 + L1PA7 LINE L1 5165 6148 -6 259 292 15 0 chr6 21673138 21673203 -167606351 - L3 LINE CR1 -248 1329 1264 352 119 0 0 chr6 21673210 21673269 -167606285 - Alu SINE Alu 0 302 244 185 243 121 79 chr6 21673279 21673331 -167606223 - L3 LINE CR1 -321 1256 1208 2295 97 0 7 chr6 21673331 21673639 -167605915 + AluSq SINE Alu 1 306 -7 185 243 121 79 chr6 21673639 21673726 -167605828 - L3 LINE CR1 -369 1208 1111 * 208 398 70 8 chr6 21673709 21673837 -167605717 - L2 LINE L2 0 3272 3137 302 332 153 0 chr6 21674091 21674281 -167605273 - L1M4 LINE L1 -2972 3174 2956 1100 151 23 41 chr6 21675210 21675428 -167604126 + MER20 DNA MER1_type 6 219 0 371 247 0 0 chr6 21675581 21675670 -167603884 - Charlie8 DNA MER1_type -2256 161 73 198 182 0 76 chr6 21676053 21676119 -167603435 + MIR SINE MIR 154 214 -48 359 292 118 12 chr6 21677214 21677375 -167602179 + MER5A DNA MER1_type 9 186 -3 525 328 51 2 chr6 21677398 21677812 -167601742 - MLT1L LTR MaLR -79 536 35 2323 86 0 3 chr6 21678025 21678327 -167601227 - AluSq SINE Alu -12 301 1 206 355 40 0 chr6 21678369 21678445 -167601109 - MIR3 SINE MIR -16 192 114 4224 148 24 14 chr6 21679007 21679725 -167599829 - MER44D DNA MER2_type 0 605 9 262 306 95 48 chr6 21679769 21679916 -167599638 + L3 LINE CR1 1003 1156 -421 322 268 176 33 chr6 21679938 21680091 -167599463 - MIR SINE MIR -53 209 35 423 257 74 40 chr6 21680118 21680266 -167599288 - MIR SINE MIR -18 244 92 211 152 0 0 chr6 21680330 21680363 -167599191 + L3 LINE CR1 1294 1326 -251 21 0 0 0 chr6 21680856 21680877 -167598677 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 21681413 21681434 -167598120 + AT_rich Low_complexity Low_complexity 1 21 0 2070 98 7 20 chr6 21683312 21683617 -167595937 - AluSq SINE Alu -12 301 1 195 317 30 40 chr6 21684059 21684160 -167595394 + L2 LINE L2 2840 2939 -375 517 232 132 96 chr6 21684606 21684878 -167594676 - L2 LINE L2 -1 3312 3031 219 88 0 0 chr6 21684879 21684913 -167594641 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 4111 113 14 7 chr6 21684935 21685555 -167593999 - L1PB1 LINE L1 -6 6145 5521 259 292 29 74 chr6 21685650 21685893 -167593661 - L2 LINE L2 -1262 2052 1821 835 176 0 0 chr6 21685933 21686075 -167593479 + FLAM_C SINE Alu 1 142 -1 2539 61 0 3 chr6 21686091 21686401 -167593153 + AluY SINE Alu 1 309 -2 1069 178 18 49 chr6 21686495 21686720 -167592834 - MER20 DNA MER1_type -1 218 1 225 371 64 21 chr6 21687628 21687768 -167591786 - MIR SINE MIR -6 256 111 375 60 0 0 chr6 21689157 21689207 -167590347 + (TG)n Simple_repeat Simple_repeat 1 50 0 358 215 21 55 chr6 21692209 21692335 -167587219 - MIR SINE MIR -70 138 23 2635 42 0 6 chr6 21693044 21693356 -167586198 - AluY SINE Alu -1 310 1 230 225 38 12 chr6 21693612 21693692 -167585862 - L1ME4a LINE L1 -49 6072 5991 244 210 25 37 chr6 21693754 21693835 -167585719 + MER116 DNA Mariner 1 80 0 1715 131 64 14 chr6 21694033 21694342 -167585212 + AluSq SINE Alu 7 313 0 234 0 0 0 chr6 21695843 21695869 -167583685 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1541 147 59 82 chr6 21697473 21697662 -167581892 - AluJb SINE Alu -13 299 118 297 0 0 0 chr6 21697662 21697695 -167581859 + (TA)n Simple_repeat Simple_repeat 1 33 0 1541 147 59 82 chr6 21697695 21697811 -167581743 - AluJb SINE Alu -194 118 1 3633 122 2 28 chr6 21698112 21698652 -167580902 - MER1A DNA MER1_type 0 527 2 188 33 0 33 chr6 21698704 21698734 -167580820 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr6 21698956 21698988 -167580566 + (GA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr6 21699654 21699682 -167579872 + AT_rich Low_complexity Low_complexity 1 28 0 2222 107 3 16 chr6 21700778 21701088 -167578466 - AluSg SINE Alu -4 306 1 21 0 0 0 chr6 21701262 21701283 -167578271 + AT_rich Low_complexity Low_complexity 1 21 0 2417 86 3 0 chr6 21702019 21702322 -167577232 - AluSp SINE Alu -9 304 1 248 248 28 131 chr6 21702442 21702587 -167576967 + MIR SINE MIR 61 190 -72 468 275 84 24 chr6 21703265 21703432 -167576122 + MIR SINE MIR 30 206 -56 207 216 0 0 chr6 21703504 21703541 -167576013 + L2 LINE L2 3219 3255 -17 1605 55 0 0 chr6 21703563 21703765 -167575789 - L1PA5 LINE L1 -2 6152 5951 1794 146 57 0 chr6 21703765 21704045 -167575509 + AluSx SINE Alu 6 301 -11 1751 129 18 11 chr6 21705408 21705736 -167573818 - AluSx SINE Alu 0 330 1 2418 75 0 3 chr6 21706349 21706654 -167572900 - AluSq SINE Alu -9 304 1 593 304 43 32 chr6 21706858 21707111 -167572443 - MIR SINE MIR -1 261 6 2435 76 0 0 chr6 21707308 21707610 -167571944 - AluY SINE Alu -9 302 1 5906 20 6 0 chr6 21708264 21708950 -167570604 - L1PA2 LINE L1 -2 6153 5464 35 24 0 0 chr6 21709498 21709540 -167570014 + AT_rich Low_complexity Low_complexity 1 42 0 393 237 26 13 chr6 21709553 21709705 -167569849 + (TA)n Simple_repeat Simple_repeat 1 154 0 264 273 80 87 chr6 21710971 21711121 -167568433 - L2 LINE L2 -42 3271 3123 22 70 0 0 chr6 21711518 21711561 -167567993 + AT_rich Low_complexity Low_complexity 1 43 0 360 356 164 8 chr6 21711596 21711998 -167567556 - L2 LINE L2 -816 2498 2034 1024 83 0 8 chr6 21712007 21712139 -167567415 + AluSc SINE Alu 1 131 -178 2424 84 7 0 chr6 21712142 21712451 -167567103 + AluSx SINE Alu 1 311 -1 5364 130 32 29 chr6 21713503 21713558 -167565996 + L1MA5 LINE L1 5319 5372 -928 2134 125 30 0 chr6 21713558 21713861 -167565693 + AluSx SINE Alu 1 312 0 5364 130 32 29 chr6 21713861 21714782 -167564772 + L1MA5 LINE L1 5372 6298 -2 1891 112 0 0 chr6 21714796 21715037 -167564517 + AluSx SINE Alu 10 250 -62 284 319 141 15 chr6 21715188 21715323 -167564231 + MIR3 SINE MIR 52 203 -5 882 266 103 88 chr6 21715358 21715784 -167563770 + L2 LINE L2 1636 2075 -1239 791 169 123 60 chr6 21715784 21716086 -167563468 - MER33 DNA MER1_type 0 324 4 882 266 103 88 chr6 21716086 21716241 -167563313 + L2 LINE L2 2075 2226 -1088 713 258 39 82 chr6 21716243 21716770 -167562784 - L2 LINE L2 -2 3311 2538 1041 165 5 24 chr6 21716825 21717031 -167562523 - MER3 DNA MER1_type -6 203 2 679 297 39 66 chr6 21717124 21717454 -167562100 + L2 LINE L2 2316 2636 -678 369 208 195 88 chr6 21717454 21717613 -167561941 - MER5B DNA MER1_type -1 177 2 679 297 39 66 chr6 21717613 21717663 -167561891 + L2 LINE L2 2636 2686 -628 445 264 147 35 chr6 21717804 21718001 -167561553 - MIR SINE MIR -13 249 31 208 0 62 0 chr6 21718943 21718975 -167560579 + (CA)n Simple_repeat Simple_repeat 2 35 0 192 152 0 0 chr6 21720095 21720128 -167559426 + CT-rich Low_complexity Low_complexity 1 33 0 3739 124 24 24 chr6 21720209 21720844 -167558710 - MER41B LTR ERV1 0 635 1 252 217 22 0 chr6 21721215 21721261 -167558293 - MER5A DNA MER1_type 0 189 143 2512 77 0 6 chr6 21721782 21722095 -167557459 - AluY SINE Alu 0 311 1 2346 84 0 3 chr6 21722458 21722794 -167556760 + AluSp SINE Alu 6 340 0 422 206 2 11 chr6 21724127 21724258 -167555296 - L1ME LINE L1 -387 5758 5629 554 235 51 11 chr6 21724397 21724660 -167554894 - L1ME LINE L1 -537 5567 5275 649 296 90 49 chr6 21724685 21725745 -167553809 - L1ME LINE L1 -900 5229 4127 246 222 0 19 chr6 21725746 21725800 -167553754 + CT-rich Low_complexity Low_complexity 2 54 0 455 264 95 90 chr6 21725825 21725943 -167553611 - L1ME LINE L1 -1964 4165 4049 2353 73 7 0 chr6 21725943 21726243 -167553311 + AluSq SINE Alu 1 302 -11 455 264 95 90 chr6 21726243 21726346 -167553208 - L1ME LINE L1 -2080 4049 3948 1595 97 14 5 chr6 21726346 21726563 -167552991 - AluSg/x SINE Alu -19 291 73 455 264 95 90 chr6 21726563 21726708 -167552846 - L1ME LINE L1 -2181 3948 3796 1141 103 31 16 chr6 21726751 21726945 -167552609 - L1MB2 LINE L1 -16 6155 5959 3867 133 23 19 chr6 21726950 21727640 -167551914 + L1MA8 LINE L1 5587 6279 -12 335 236 113 55 chr6 21728119 21728429 -167551125 - L1ME LINE L1 -2665 3464 3137 22 80 0 0 chr6 21728635 21728685 -167550869 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr6 21728726 21728762 -167550792 + AT_rich Low_complexity Low_complexity 1 36 0 225 154 0 0 chr6 21728795 21728834 -167550720 + T-rich Low_complexity Low_complexity 1 39 0 2188 141 0 0 chr6 21728836 21729148 -167550406 - AluSx SINE Alu 0 312 1 257 209 52 26 chr6 21729294 21729409 -167550145 - L1ME LINE L1 -3690 2439 2322 261 240 25 16 chr6 21729462 21729583 -167549971 + (TA)n Simple_repeat Simple_repeat 2 123 0 575 162 0 38 chr6 21729861 21729966 -167549588 - AluJb SINE Alu -78 234 134 738 291 94 46 chr6 21730164 21731208 -167548346 - L1MEd LINE L1 -4746 1564 420 309 109 0 0 chr6 21731459 21731505 -167548049 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr6 21731513 21731538 -167548016 + AT_rich Low_complexity Low_complexity 1 25 0 2489 74 0 0 chr6 21733571 21733882 -167545672 - AluY SINE Alu 0 311 1 1043 115 5 72 chr6 21733929 21734137 -167545417 + LTR57 LTR ERVL 2 195 -216 214 149 0 43 chr6 21734224 21734271 -167545283 + (CAT)n Simple_repeat Simple_repeat 3 47 0 4111 113 14 7 chr6 21734329 21734949 -167544605 + L1PB1 LINE L1 5521 6145 -6 219 88 0 0 chr6 21734971 21735005 -167544549 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 517 232 132 96 chr6 21735006 21735278 -167544276 + L2 LINE L2 3031 3312 -1 195 317 30 40 chr6 21735724 21735825 -167543729 - L2 LINE L2 -375 2938 2839 2070 98 7 20 chr6 21736267 21736572 -167542982 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr6 21738450 21738471 -167541083 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 21739007 21739028 -167540526 + AT_rich Low_complexity Low_complexity 1 21 0 211 152 0 0 chr6 21739521 21739554 -167540000 - L3 LINE CR1 -251 1326 1294 423 257 74 40 chr6 21739618 21739766 -167539788 + MIR SINE MIR 92 244 -18 328 270 178 26 chr6 21739793 21739945 -167539609 + MIR SINE MIR 35 209 -53 262 306 95 48 chr6 21739967 21740114 -167539440 - L3 LINE CR1 -421 1156 1003 4224 148 24 14 chr6 21740158 21740876 -167538678 + MER44D DNA MER2_type 9 605 0 206 355 40 0 chr6 21741438 21741514 -167538040 + MIR3 SINE MIR 114 192 -16 2323 86 0 3 chr6 21741556 21741858 -167537696 + AluSq SINE Alu 1 301 -12 525 328 51 2 chr6 21742071 21742485 -167537069 + MLT1L LTR MaLR 35 536 -79 359 292 118 12 chr6 21742508 21742669 -167536885 - MER5A DNA MER1_type -3 186 9 198 182 0 76 chr6 21743764 21743830 -167535724 - MIR SINE MIR -48 214 154 371 247 0 0 chr6 21744213 21744302 -167535252 + Charlie8 DNA MER1_type 73 161 -2256 1100 151 23 41 chr6 21744455 21744673 -167534881 - MER20 DNA MER1_type 0 219 6 302 332 153 0 chr6 21745602 21745792 -167533762 + L1M4 LINE L1 2956 3174 -2972 208 398 70 8 chr6 21746046 21746174 -167533380 + L2 LINE L2 3137 3272 0 185 243 121 79 chr6 21746157 21746244 -167533310 + L3 LINE CR1 1111 1208 -369 * 2295 97 0 7 chr6 21746244 21746552 -167533002 - AluSq SINE Alu -7 306 1 185 243 121 79 chr6 21746552 21746604 -167532950 + L3 LINE CR1 1208 1256 -321 352 119 0 0 chr6 21746614 21746673 -167532881 + Alu SINE Alu 244 302 0 259 292 15 0 chr6 21746680 21746745 -167532809 + L3 LINE CR1 1264 1329 -248 7161 40 30 4 chr6 21747398 21748374 -167531180 - L1PA7 LINE L1 -6 6148 5165 291 28 0 0 chr6 21749236 21749272 -167530282 + (CTTG)n Simple_repeat Simple_repeat 3 38 0 246 62 0 0 chr6 21749447 21749479 -167530075 + (GA)n Simple_repeat Simple_repeat 1 32 0 278 294 220 67 chr6 21749603 21750021 -167529533 + LTR67 LTR ERVL 2 483 -74 735 268 128 38 chr6 21750044 21750521 -167529033 - HAL1 LINE L1 -4 2503 1984 4499 194 27 20 chr6 21750961 21751364 -167528190 - MER45B DNA AcHobo -541 1040 641 1970 158 6 3 chr6 21751364 21751675 -167527879 - AluSx SINE Alu 0 312 1 4499 194 27 20 chr6 21751675 21752268 -167527286 - MER45B DNA AcHobo -940 641 37 1031 147 13 0 chr6 21752407 21752563 -167526991 - AluSg/x SINE Alu -20 292 135 2258 100 10 7 chr6 21752604 21752903 -167526651 + AluSg SINE Alu 1 300 -10 11809 42 5 0 chr6 21753176 21755402 -167524152 + L1PA6 LINE L1 3917 6154 0 2135 120 0 10 chr6 21755408 21755707 -167523847 - AluSx SINE Alu -16 296 1 316 354 22 58 chr6 21755787 21756013 -167523541 + MIR SINE MIR 26 243 -19 1741 171 7 32 chr6 21756355 21756665 -167522889 - AluJo SINE Alu -6 306 5 293 324 114 11 chr6 21758594 21758770 -167520784 + L3b LINE CR1 1129 1322 -261 180 0 0 0 chr6 21759764 21759784 -167519770 + (A)n Simple_repeat Simple_repeat 1 20 0 246 237 17 0 chr6 21760278 21760337 -167519217 - L2 LINE L2 -1 3312 3253 408 302 119 38 chr6 21760877 21761112 -167518442 + MIR SINE MIR 9 262 0 381 304 87 0 chr6 21761237 21761352 -167518202 - L2 LINE L2 -7 3306 3182 237 310 106 42 chr6 21761620 21761904 -167517650 + L2 LINE L2 2550 2851 -463 206 197 40 66 chr6 21762082 21762158 -167517396 + L2 LINE L2 3162 3235 -78 326 301 36 0 chr6 21763732 21763815 -167515739 + MIR SINE MIR 62 147 -115 2186 113 3 3 chr6 21765628 21765937 -167513617 + AluSx SINE Alu 1 309 -3 2036 133 0 7 chr6 21766391 21766727 -167512827 - AluSx SINE Alu 0 334 1 459 270 50 55 chr6 21766981 21767181 -167512373 - MIR SINE MIR -34 228 30 204 271 153 61 chr6 21767717 21767979 -167511575 + L2 LINE L2 2967 3252 -61 300 304 49 10 chr6 21768067 21768169 -167511385 - MIR SINE MIR -88 174 69 212 184 0 0 chr6 21769353 21769391 -167510163 - MIR SINE MIR -11 251 214 22 35 0 0 chr6 21769504 21769533 -167510021 + AT_rich Low_complexity Low_complexity 1 29 0 947 164 16 22 chr6 21769626 21769809 -167509745 + AluSg/x SINE Alu 130 311 -1 988 189 5 11 chr6 21771511 21771702 -167507852 - AluJo SINE Alu -1 311 122 8684 110 15 82 chr6 21771703 21773015 -167506539 + Tigger1 DNA MER2_type 56 1238 -1180 2320 67 0 11 chr6 21773015 21773300 -167506254 - AluY SINE Alu -1 310 29 8684 110 15 82 chr6 21773300 21773625 -167505929 + Tigger1 DNA MER2_type 1238 1583 -835 763 126 15 44 chr6 21773630 21773765 -167505789 + AluJ SINE Alu 1 131 -171 41241 30 21 1 chr6 21773771 21779797 -167499757 + L1HS LINE L1 7 6155 0 228 35 0 0 chr6 21779800 21779829 -167499725 + (A)n Simple_repeat Simple_repeat 1 29 0 1160 163 0 20 chr6 21779829 21780025 -167499529 + AluJ SINE Alu 120 311 -1 4073 127 25 22 chr6 21780028 21780191 -167499363 + Tigger1 DNA MER2_type 1585 1746 -672 2015 77 59 21 chr6 21780191 21780478 -167499076 + AluY SINE Alu 1 298 -13 4073 127 25 22 chr6 21780478 21781036 -167498518 + Tigger1 DNA MER2_type 1746 2308 -110 627 180 40 47 chr6 21781105 21781255 -167498299 + Tigger1 DNA MER2_type 2269 2417 -1 2136 114 7 3 chr6 21781300 21781622 -167497932 + AluSq SINE Alu 1 323 0 2139 132 3 0 chr6 21782583 21782878 -167496676 + AluSx SINE Alu 1 296 -16 2695 19 0 0 chr6 21783049 21783372 -167496182 - L1PA3 LINE L1 -167 5988 5666 1449 12 0 0 chr6 21783379 21783544 -167496010 + L1PA3 LINE L1 5991 6155 0 1494 219 50 71 chr6 21784026 21784256 -167495298 + L1ME1 LINE L1 4615 4848 -1298 1635 150 93 31 chr6 21784256 21784609 -167494945 - THE1C LTR MaLR 0 375 1 1494 219 50 71 chr6 21784609 21784780 -167494774 + L1ME1 LINE L1 4848 5021 -1125 2161 118 0 0 chr6 21784780 21785076 -167494478 + AluSx SINE Alu 1 296 -16 1494 219 50 71 chr6 21785076 21785338 -167494216 + L1ME1 LINE L1 5021 5265 -881 886 150 0 0 chr6 21785345 21785472 -167494082 - FRAM SINE Alu -3 173 47 1706 208 83 55 chr6 21785474 21786042 -167493512 + L1ME1 LINE L1 5530 6081 -85 1588 154 41 31 chr6 21786042 21786335 -167493219 + AluJo SINE Alu 1 296 -16 2401 94 0 7 chr6 21786339 21786647 -167492907 - AluSx SINE Alu -6 306 1 1706 208 83 55 chr6 21786647 21786688 -167492866 + L1ME1 LINE L1 6083 6161 -5 21 36 0 0 chr6 21786862 21786890 -167492664 + AT_rich Low_complexity Low_complexity 1 28 0 792 20 0 10 chr6 21786906 21787006 -167492548 - L1PB1 LINE L1 0 6151 6053 2443 69 0 13 chr6 21787369 21787672 -167491882 - AluY SINE Alu -12 299 1 2334 95 0 3 chr6 21787873 21788177 -167491377 - AluSx SINE Alu -9 303 1 2593 175 32 20 chr6 21790709 21791212 -167488342 - MLT2B2 LTR ERVL -6 509 1 261 250 228 0 chr6 21791549 21791641 -167487913 + MIR SINE MIR 88 200 -62 625 244 45 51 chr6 21792998 21793191 -167486363 - MLT2C1 LTR ERVL -34 380 201 2338 107 0 0 chr6 21793191 21793501 -167486053 + AluSg SINE Alu 1 310 0 625 244 45 51 chr6 21793501 21793689 -167485865 - MLT2C1 LTR ERVL -213 201 13 1652 265 38 34 chr6 21793721 21794495 -167485059 + L1M4 LINE L1 4410 5186 -960 368 127 0 0 chr6 21794496 21794559 -167484995 + L1MA9 LINE L1 6212 6274 -38 524 231 75 42 chr6 21794610 21794822 -167484732 + L1M4 LINE L1 4812 5030 -1116 282 221 250 0 chr6 21794822 21794926 -167484628 + L1ME3A LINE L1 6034 6163 -7 1563 164 101 9 chr6 21794939 21795257 -167484297 + MER7A DNA MER2_type 1 345 -1 297 258 0 0 chr6 21795258 21795351 -167484203 + (TATG)n Simple_repeat Simple_repeat 2 94 0 299 317 10 0 chr6 21795455 21795556 -167483998 + (TA)n Simple_repeat Simple_repeat 2 103 0 255 31 0 0 chr6 21796299 21796331 -167483223 + (TA)n Simple_repeat Simple_repeat 1 32 0 2474 71 3 0 chr6 21796332 21796628 -167482926 - AluSp SINE Alu -16 297 1 246 349 148 0 chr6 21797050 21797219 -167482335 + MER117 DNA MER1_type 3 196 -1 204 222 0 0 chr6 21797256 21797301 -167482253 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr6 21797945 21797973 -167481581 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 21798009 21798031 -167481523 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr6 21798089 21798113 -167481441 + (TG)n Simple_repeat Simple_repeat 2 25 0 310 343 9 0 chr6 21799307 21799415 -167480139 + MIR SINE MIR 125 233 -29 298 260 41 112 chr6 21799478 21799647 -167479907 - MIR SINE MIR -25 237 81 2009 119 57 3 chr6 21801209 21801545 -167478009 - MER46B DNA MER2_type 0 236 8 2141 116 20 3 chr6 21801932 21802233 -167477321 - AluSq SINE Alu -7 306 1 208 91 45 23 chr6 21802749 21802793 -167476761 + GA-rich Low_complexity Low_complexity 3 47 0 460 292 142 34 chr6 21802858 21803211 -167476343 + MLT1I LTR MaLR 19 409 0 330 329 234 13 chr6 21803547 21803945 -167475609 - L2 LINE L2 -784 2530 2045 182 294 71 47 chr6 21804316 21804401 -167475153 - MIR SINE MIR -3 259 173 2757 249 70 9 chr6 21804786 21805585 -167473969 + L1MD2 LINE L1 108 955 -5585 * 5773 203 63 52 chr6 21805573 21806357 -167473197 + L1MD2 LINE L1 1179 1953 -4587 1316 192 80 4 chr6 21806357 21806633 -167472921 + AluJo SINE Alu 5 301 -11 5773 203 63 52 chr6 21806633 21809052 -167470502 + L1MD2 LINE L1 1953 4436 -2104 2083 123 30 0 chr6 21809052 21809353 -167470201 + AluSx SINE Alu 1 310 -2 5773 203 63 52 chr6 21809353 21809652 -167469902 + L1MD2 LINE L1 4436 4730 -1810 1019 168 56 0 chr6 21809652 21809831 -167469723 + L1PA15 LINE L1 5976 6164 -1 3704 212 99 49 chr6 21809831 21809883 -167469671 + L1MD2 LINE L1 5526 5574 -1179 2383 79 3 10 chr6 21809883 21810187 -167469367 - AluSp SINE Alu -2 311 10 3704 212 99 49 chr6 21810187 21810254 -167469300 + L1MD2 LINE L1 5574 5636 -1117 2053 166 0 20 chr6 21810254 21810598 -167468956 + MER1B DNA MER1_type 1 337 0 3704 212 99 49 chr6 21810598 21811660 -167467894 + L1MD2 LINE L1 5636 6753 0 468 298 0 24 chr6 21811661 21811785 -167467769 + MER5B DNA MER1_type 58 178 0 202 213 85 0 chr6 21814861 21814908 -167464646 - L2 LINE L2 -3 3269 3219 414 101 241 0 chr6 21814950 21815029 -167464525 + AluSg SINE Alu 5 102 -208 4215 124 70 64 chr6 21815029 21816410 -167463144 - pTR5 LTR ERV1 -1 2437 743 1278 112 20 30 chr6 21816410 21816607 -167462947 + AluSg SINE Alu 99 293 -19 224 163 0 20 chr6 21816610 21816659 -167462895 + GA-rich Low_complexity Low_complexity 1 48 0 360 274 14 0 chr6 21816749 21816822 -167462732 - MER5A DNA MER1_type -106 83 10 632 283 30 0 chr6 21817537 21817703 -167461851 + MER5B DNA MER1_type 7 177 -1 289 311 47 0 chr6 21818237 21818343 -167461211 - L2 LINE L2 0 3313 3203 22 56 0 0 chr6 21818444 21818480 -167461074 + AT_rich Low_complexity Low_complexity 1 36 0 746 249 127 47 chr6 21818551 21818960 -167460594 - L1MC4a LINE L1 -1762 6046 5605 * 781 318 44 21 chr6 21818958 21819345 -167460209 - L1ME LINE L1 -444 5677 5282 229 263 35 0 chr6 21819366 21819423 -167460131 - MIR SINE MIR 0 262 204 2143 97 0 10 chr6 21819763 21820072 -167459482 - AluSg1 SINE Alu 0 306 1 387 264 50 50 chr6 21820129 21820330 -167459224 - L1ME4a LINE L1 -82 6039 5839 290 329 117 41 chr6 21821929 21822183 -167457371 + L2 LINE L2 2780 3047 -225 1796 166 32 9 chr6 21822896 21823240 -167456314 + L1MC3 LINE L1 7434 7785 0 2205 111 0 10 chr6 21823649 21823956 -167455598 + AluSg SINE Alu 2 305 -5 2374 78 3 0 chr6 21824987 21825280 -167454274 - AluY SINE Alu -17 294 1 345 303 8 30 chr6 21825327 21825459 -167454095 - MIR SINE MIR -109 153 25 288 304 36 7 chr6 21825899 21826037 -167453517 - L1M4b LINE L1 -5330 1529 1388 2309 99 3 3 chr6 21826042 21826345 -167453209 - AluSx SINE Alu -9 303 1 23 0 0 0 chr6 21826845 21826868 -167452686 + AT_rich Low_complexity Low_complexity 1 23 0 338 344 8 0 chr6 21826999 21827130 -167452424 + Charlie8 DNA MER1_type 129 260 -2157 394 306 50 88 chr6 21827818 21828135 -167451419 - L2 LINE L2 -6 3266 2962 2345 91 0 3 chr6 21828232 21828528 -167451026 - AluSq SINE Alu -18 295 1 219 316 0 25 chr6 21828867 21828946 -167450608 + L2 LINE L2 3196 3272 0 1191 204 27 4 chr6 21829456 21829716 -167449838 + L1MD3 LINE L1 7730 7995 0 22 35 0 0 chr6 21830204 21830233 -167449321 + AT_rich Low_complexity Low_complexity 1 29 0 2268 118 0 0 chr6 21830484 21830790 -167448764 + AluSx SINE Alu 1 306 -6 1692 251 136 36 chr6 21831794 21832462 -167447092 + L2 LINE L2 1957 2691 -623 2321 102 0 0 chr6 21832664 21832959 -167446595 - AluSx SINE Alu -17 295 1 211 341 45 38 chr6 21832962 21833094 -167446460 - MIR3 SINE MIR -43 165 33 387 0 0 0 chr6 21833112 21833155 -167446399 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1301 198 0 0 chr6 21833754 21833971 -167445583 - AluJb SINE Alu -95 217 1 498 279 49 46 chr6 21836897 21837266 -167442288 + L1ME4a LINE L1 5719 6088 -33 206 160 60 0 chr6 21837272 21837322 -167442232 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 2640 48 0 3 chr6 21837540 21837852 -167441702 + AluY SINE Alu 1 311 0 209 296 178 33 chr6 21837917 21838069 -167441485 + L2 LINE L2 2918 3091 -181 1793 179 38 52 chr6 21840560 21840875 -167438679 - L1ME LINE L1 -494 5672 5363 1746 136 0 101 chr6 21840875 21841213 -167438341 - AluJb SINE Alu -8 304 1 1793 179 38 52 chr6 21841213 21841322 -167438232 - L1ME LINE L1 -803 5363 5254 2076 185 82 55 chr6 21841344 21841726 -167437828 + L1M4 LINE L1 4612 4982 -1164 936 218 35 0 chr6 21841726 21841896 -167437658 - MER45A DNA AcHobo -1 177 2 2076 185 82 55 chr6 21841896 21842044 -167437510 + L1M4 LINE L1 4982 5164 -982 2235 106 3 0 chr6 21842044 21842336 -167437218 + AluSq SINE Alu 5 297 -16 2076 185 82 55 chr6 21842336 21842410 -167437144 + L1M4 LINE L1 5164 5234 -912 386 288 54 95 chr6 21842444 21842666 -167436888 - MIR SINE MIR -30 232 20 220 226 0 69 chr6 21846048 21846150 -167433404 + C-rich Low_complexity Low_complexity 2 96 0 195 42 0 0 chr6 21846753 21846777 -167432777 + (CGG)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chr6 21847080 21847115 -167432439 + GC_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr6 21848664 21848709 -167430845 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr6 21850582 21850604 -167428950 + AT_rich Low_complexity Low_complexity 1 22 0 342 318 166 15 chr6 21853234 21853571 -167425983 + L2 LINE L2 2267 2654 -660 223 277 40 30 chr6 21854880 21854906 -167424648 - MIR3 SINE MIR -6 202 178 2253 108 3 10 chr6 21854906 21855220 -167424334 + AluSx SINE Alu 1 312 0 223 277 40 30 chr6 21855220 21855294 -167424260 - MIR3 SINE MIR -30 178 101 934 217 40 54 chr6 21855556 21855832 -167423722 + L1M4 LINE L1 4856 5127 -1019 445 270 66 51 chr6 21855901 21856121 -167423433 + MIR3 SINE MIR 1 216 -46 315 266 85 96 chr6 21856121 21856158 -167423396 - MER5A DNA MER1_type 0 189 153 2492 70 3 0 chr6 21856158 21856456 -167423098 + AluSp SINE Alu 1 299 -14 315 266 85 96 chr6 21856456 21856606 -167422948 - MER5A DNA MER1_type -36 153 4 337 204 69 0 chr6 21857453 21857530 -167422024 + MIR SINE MIR 35 120 -88 267 229 36 136 chr6 21858560 21858626 -167420928 - MIR3 SINE MIR -52 156 110 1764 193 0 10 chr6 21858626 21858937 -167420617 + AluJo SINE Alu 1 308 -4 267 229 36 136 chr6 21858937 21859010 -167420544 - MIR3 SINE MIR -98 110 31 3418 141 32 17 chr6 21861142 21861732 -167417822 - L1MA9 LINE L1 0 6312 5714 5317 111 96 126 chr6 21862291 21863870 -167415684 - pTR5 LTR ERV1 0 2438 741 876 193 35 12 chr6 21864261 21864432 -167415122 + MER45A DNA AcHobo 4 178 0 198 239 0 0 chr6 21866480 21866551 -167413003 + (CA)n Simple_repeat Simple_repeat 2 72 0 201 39 0 0 chr6 21867241 21867267 -167412287 + (T)n Simple_repeat Simple_repeat 1 26 0 465 286 21 7 chr6 21867505 21867645 -167411909 + MER5B DNA MER1_type 32 173 -5 987 181 12 0 chr6 21867657 21867828 -167411726 - MER5B DNA MER1_type 0 178 6 2171 121 3 0 chr6 21871395 21871700 -167407854 + AluSx SINE Alu 1 306 -6 406 288 0 61 chr6 21876307 21876439 -167403115 + MIR3 SINE MIR 1 124 -84 207 108 27 0 chr6 21876448 21876485 -167403069 + (TTG)n Simple_repeat Simple_repeat 3 40 0 276 186 0 0 chr6 21876992 21877051 -167402503 + (CA)n Simple_repeat Simple_repeat 1 59 0 182 245 41 0 chr6 21877626 21877675 -167401879 + L2 LINE L2 3261 3311 -2 1152 188 34 5 chr6 21878487 21878695 -167400859 + MER20 DNA MER1_type 1 214 -5 2053 101 34 24 chr6 21878997 21879293 -167400261 + AluSq SINE Alu 2 300 -13 2158 110 3 7 chr6 21879887 21880196 -167399358 - AluSx SINE Alu -4 308 1 548 118 24 0 chr6 21880226 21880311 -167399243 + L1MA4 LINE L1 6208 6294 -6 584 294 35 41 chr6 21880428 21880625 -167398929 - MIR SINE MIR -19 243 48 2904 156 11 85 chr6 21880720 21880840 -167398714 - L1MD3 LINE L1 -6 7989 7862 2306 108 0 0 chr6 21880840 21881145 -167398409 - AluSq SINE Alu -8 305 1 2904 156 11 85 chr6 21881145 21881658 -167397896 - L1MD3 LINE L1 -133 7862 7403 266 216 102 57 chr6 21881659 21881747 -167397807 - MLT1F1 LTR MaLR -443 124 33 811 157 0 7 chr6 21881754 21881901 -167397653 - L1MC3 LINE L1 -697 7088 6943 268 209 90 0 chr6 21882067 21882134 -167397420 - MER91C DNA MER1_type -32 108 36 661 152 88 16 chr6 21882774 21882899 -167396655 - FRAM SINE Alu 0 40 1 285 329 41 35 chr6 21882955 21883125 -167396429 + L2 LINE L2 3009 3179 -93 32 26 0 0 chr6 21883713 21883752 -167395802 + AT_rich Low_complexity Low_complexity 1 39 0 1474 159 56 0 chr6 21883783 21884035 -167395519 - L1MC1 LINE L1 -7 6326 6061 2430 154 73 5 chr6 21884036 21884433 -167395121 + MSTB LTR MaLR 3 426 0 975 169 6 0 chr6 21884435 21884595 -167394959 - L1MC1 LINE L1 -217 6116 5956 249 111 156 0 chr6 21884609 21884654 -167394900 - L1MC1 LINE L1 -505 5828 5777 892 226 36 9 chr6 21884660 21884881 -167394673 - L1ME3A LINE L1 -5 6165 5939 236 250 17 0 chr6 21885439 21885499 -167394055 + (CA)n Simple_repeat Simple_repeat 2 62 0 455 275 112 39 chr6 21886074 21886252 -167393302 - MIR SINE MIR -9 253 63 2745 196 133 75 chr6 21886925 21887570 -167391984 + L1MC3 LINE L1 6706 7423 -362 1771 99 0 0 chr6 21887570 21887793 -167391761 - AluSc SINE Alu -86 223 1 2745 196 133 75 chr6 21887793 21888082 -167391472 + L1MC3 LINE L1 7423 7694 -91 231 282 45 55 chr6 21889005 21889115 -167390439 + LTR67 LTR ERVL 93 201 -356 505 288 55 0 chr6 21889264 21889410 -167390144 + LTR67 LTR ERVL 393 546 -11 253 351 52 30 chr6 21889938 21890206 -167389348 - L2 LINE L2 -343 2971 2698 491 198 0 11 chr6 21891398 21891489 -167388065 + Tigger5 DNA MER2_type 2234 2323 0 21 82 0 0 chr6 21892428 21892477 -167387077 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr6 21892567 21892606 -167386948 + AT_rich Low_complexity Low_complexity 1 39 0 371 257 106 17 chr6 21892630 21892809 -167386745 - HAL1b LINE L1 -37 1311 1117 327 345 53 9 chr6 21892811 21892924 -167386630 - HAL1b LINE L1 -1165 183 66 198 0 0 0 chr6 21893003 21893025 -167386529 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2465 39 11 0 chr6 21893035 21893318 -167386236 - AluY SINE Alu -25 286 1 9416 216 64 30 chr6 21893484 21894272 -167385282 - L1M3 LINE L1 -691 5489 4729 2375 75 0 16 chr6 21894272 21894579 -167384975 - AluY SINE Alu -9 302 1 9416 216 64 30 chr6 21894579 21896040 -167383514 - L1M3 LINE L1 -1451 4729 3137 1920 151 3 25 chr6 21896040 21896359 -167383195 - AluSx SINE Alu 0 312 1 9416 216 64 30 chr6 21896359 21896986 -167382568 - L1M3 LINE L1 -3043 3137 2533 317 226 12 0 chr6 21899593 21899677 -167379877 + CT-rich Low_complexity Low_complexity 1 85 0 936 260 72 40 chr6 21899685 21900062 -167379492 - L2 LINE L2 -1 3312 2924 1348 90 0 124 chr6 21900906 21901140 -167378414 + AluSg/x SINE Alu 82 286 -26 22 0 0 0 chr6 21901140 21901162 -167378392 + AT_rich Low_complexity Low_complexity 1 22 0 613 283 53 35 chr6 21901659 21901849 -167377705 + MIR SINE MIR 12 208 -54 1833 146 3 59 chr6 21901849 21902172 -167377382 + AluJb SINE Alu 1 305 -7 613 283 53 35 chr6 21902172 21902207 -167377347 + MIR SINE MIR 208 241 -21 258 32 0 0 chr6 21902344 21902375 -167377179 + (CA)n Simple_repeat Simple_repeat 1 31 0 3045 158 41 16 chr6 21902536 21903043 -167376511 - MLT2B1 LTR ERVL 0 520 1 451 333 13 13 chr6 21903257 21903413 -167376141 + MER5B DNA MER1_type 23 178 0 253 246 82 118 chr6 21903419 21903529 -167376025 - MIR SINE MIR -55 153 48 2528 69 3 0 chr6 21903839 21904142 -167375412 + AluY SINE Alu 1 304 -7 290 237 75 43 chr6 21904551 21904644 -167374910 - MIR SINE MIR -68 140 45 3695 46 7 0 chr6 21906126 21906558 -167372996 + L1PA8 LINE L1 5737 6171 -1 228 179 54 18 chr6 21907266 21907322 -167372232 + HAL1 LINE L1 1451 1508 -999 207 316 18 0 chr6 21907434 21907491 -167372063 - L2 LINE L2 -4 3309 3252 447 258 73 22 chr6 21908098 21908276 -167371278 - MIR SINE MIR -7 255 69 4356 173 81 26 chr6 21908321 21908476 -167371078 - MER6 DNA MER2_type 0 865 720 198 0 0 0 chr6 21908476 21908498 -167371056 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2151 79 22 4 chr6 21908498 21908776 -167370778 - AluY SINE Alu -28 283 1 4356 173 81 26 chr6 21908776 21909439 -167370115 - MER6 DNA MER2_type -144 721 1 429 272 64 67 chr6 21909440 21909651 -167369903 + MIR SINE MIR 45 258 -4 2593 66 0 0 chr6 21909652 21909956 -167369598 - AluY SINE Alu -7 304 1 375 41 0 0 chr6 21910182 21910231 -167369323 + (TC)n Simple_repeat Simple_repeat 2 50 0 191 133 0 0 chr6 21910397 21910427 -167369127 - L2 LINE L2 -7 3306 3277 232 250 0 19 chr6 21912807 21912859 -167366695 + L3 LINE CR1 1526 1576 -1 251 232 81 40 chr6 21913006 21913105 -167366449 + MER103 DNA DNA 55 157 -9 2432 99 0 0 chr6 21913130 21913443 -167366111 - AluSq SINE Alu 0 313 1 1544 241 45 8 chr6 21913645 21914047 -167365507 - L1ME1 LINE L1 -1 6165 5749 198 330 40 30 chr6 21915133 21915233 -167364321 - L2 LINE L2 -51 3221 3121 389 191 29 0 chr6 21916016 21916084 -167363470 - MLT1B LTR MaLR -22 368 299 * 590 184 0 0 chr6 21916082 21916180 -167363374 - Tigger3(Golem) DNA MER2_type -2931 98 1 180 77 0 0 chr6 21916184 21916210 -167363344 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 188 328 0 15 chr6 21916217 21916284 -167363270 + MIR SINE MIR 59 124 -84 203 208 42 0 chr6 21918502 21918550 -167361004 - L2 LINE L2 -1 3271 3222 274 245 64 21 chr6 21918718 21918812 -167360742 + MIR3 SINE MIR 101 198 -10 314 215 15 0 chr6 21920712 21920777 -167358777 - MIR SINE MIR 0 262 197 483 60 0 0 chr6 21920777 21920844 -167358710 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 681 258 92 0 chr6 21920872 21921035 -167358519 - MIR SINE MIR -73 189 12 217 204 0 37 chr6 21921939 21921993 -167357561 - L2 LINE L2 0 3313 3262 2026 154 3 3 chr6 21922295 21922606 -167356948 + AluSx SINE Alu 1 311 -1 286 235 59 12 chr6 21923062 21923147 -167356407 + L1MC4 LINE L1 6614 6702 -1340 183 80 0 0 chr6 21923148 21923173 -167356381 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1392 146 0 0 chr6 21923255 21923454 -167356100 + L1PA16 LINE L1 5 203 -6646 * 8668 200 47 23 chr6 21923448 21928315 -167351239 + L1PA16 LINE L1 1661 6869 0 1803 147 55 0 chr6 21931991 21932283 -167347271 - AluJo SINE Alu 0 312 5 286 195 24 24 chr6 21932530 21932612 -167346942 + MER112 DNA MER1_type 36 117 -143 1262 87 0 0 chr6 21932615 21932776 -167346778 - AluSg/x SINE Alu -12 300 140 275 342 86 8 chr6 21933643 21933760 -167345794 - L2 LINE L2 0 3313 3188 344 255 21 11 chr6 21934258 21934352 -167345202 - MER5A DNA MER1_type -24 165 71 980 322 69 53 chr6 21934606 21935174 -167344380 - L3 LINE CR1 -673 904 328 1614 153 133 50 chr6 21935714 21936113 -167343441 - MSTB1 LTR MaLR 0 432 1 1667 198 3 3 chr6 21936151 21936454 -167343100 - AluJo SINE Alu -1 311 9 356 151 70 23 chr6 21936567 21936653 -167342901 + MER58 DNA MER1_type 2316 2405 -15 316 275 107 15 chr6 21938801 21938932 -167340622 - MIR3 SINE MIR -26 182 40 2171 97 0 39 chr6 21939066 21939398 -167340156 + AluSg SINE Alu 1 310 0 795 267 35 69 chr6 21940188 21940563 -167338991 - L2 LINE L2 -15 3298 2937 463 246 161 33 chr6 21940583 21940794 -167338760 - L2 LINE L2 -658 2656 2419 334 295 0 48 chr6 21940816 21940921 -167338633 + L2 LINE L2 3214 3313 0 190 333 64 13 chr6 21941921 21941999 -167337555 - MIR3 SINE MIR -34 174 93 320 356 37 12 chr6 21942272 21942435 -167337119 + MIR3 SINE MIR 39 205 -3 225 193 0 72 chr6 21942718 21942801 -167336753 + L1ME4a LINE L1 5999 6075 -46 239 390 48 0 chr6 21943328 21943515 -167336039 - MER117 DNA MER1_type 0 197 2 2177 104 0 0 chr6 21943533 21943839 -167335715 - AluSg SINE Alu 0 306 1 1745 233 8 14 chr6 21943961 21944330 -167335224 - MLT1F LTR MaLR -174 368 2 219 289 0 66 chr6 21944362 21944438 -167335116 - L2 LINE L2 -86 3186 3116 459 289 58 42 chr6 21944515 21944705 -167334849 + MLT1J2 LTR MaLR 45 237 -213 291 366 11 26 chr6 21945134 21945325 -167334229 + L2 LINE L2 2616 2803 -511 199 300 50 0 chr6 21945354 21945414 -167334140 - L2 LINE L2 0 3313 3251 707 143 118 25 chr6 21945449 21945568 -167333986 + FLAM_C SINE Alu 2 131 -12 2987 152 75 2 chr6 21945799 21946319 -167333235 - L1MD3 LINE L1 -34 7961 7404 332 242 0 0 chr6 21946319 21946385 -167333169 - MLT1F1 LTR MaLR -442 125 60 330 162 6 229 chr6 21946396 21946575 -167332979 - L1MC3 LINE L1 -674 7111 6973 617 322 27 44 chr6 21946719 21947017 -167332537 + L2 LINE L2 3021 3313 0 205 137 59 0 chr6 21947449 21947500 -167332054 + GA-rich Low_complexity Low_complexity 3 56 0 225 0 0 0 chr6 21947512 21947537 -167332017 + (TCTCCC)n Simple_repeat Simple_repeat 5 29 0 5958 61 20 61 chr6 21947539 21948442 -167331112 + SVA Other Other 1 866 -520 6768 73 11 54 chr6 21948505 21950203 -167329351 + SVA Other Other 433 1542 0 364 327 13 53 chr6 21951155 21951305 -167328249 + L3 LINE CR1 1426 1569 -8 22 0 0 0 chr6 21951378 21951400 -167328154 + AT_rich Low_complexity Low_complexity 1 22 0 277 245 47 28 chr6 21951565 21951671 -167327883 + LTR16C LTR ERVL 1 108 -383 * 2126 191 61 22 chr6 21951656 21952116 -167327438 + MLT1F LTR MaLR 75 542 0 511 240 116 26 chr6 21952456 21952682 -167326872 - L1ME4a LINE L1 -238 5883 5634 2146 115 11 0 chr6 21952682 21952969 -167326585 + AluSg SINE Alu 7 296 -14 2105 128 0 118 chr6 21953114 21953496 -167326058 - MER1B DNA MER1_type 0 337 1 329 319 103 60 chr6 21953523 21953824 -167325730 + L2 LINE L2 111 424 -2890 190 264 207 0 chr6 21954011 21954098 -167325456 + L2 LINE L2 721 825 -2489 2147 111 7 0 chr6 21954424 21954713 -167324841 - AluSx SINE Alu -7 305 15 300 260 118 66 chr6 21955281 21955781 -167323773 - L1MEd LINE L1 -2521 3608 3083 2951 223 53 44 chr6 21955839 21956732 -167322822 - L1ME1 LINE L1 -9 6157 5257 375 290 134 48 chr6 21956756 21957429 -167322125 - L1MEd LINE L1 -3177 2952 2204 2777 68 32 16 chr6 21957429 21957798 -167321756 - THE1C LTR MaLR 0 375 1 375 290 134 48 chr6 21957798 21957890 -167321664 - L1MEd LINE L1 -3925 2204 2121 1267 199 97 16 chr6 21957905 21958309 -167321245 - L1ME2 LINE L1 -9 6155 5715 23 0 0 0 chr6 21958785 21958808 -167320746 + AT_rich Low_complexity Low_complexity 1 23 0 7343 159 41 55 chr6 21958895 21959866 -167319688 - L1MA6 LINE L1 0 6300 5317 1967 150 0 0 chr6 21959866 21960153 -167319401 - AluSx SINE Alu -25 287 1 7343 159 41 55 chr6 21960153 21961656 -167317898 - L1MA6 LINE L1 -983 5317 3876 185 0 40 0 chr6 21961656 21961681 -167317873 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7343 159 41 55 chr6 21961681 21962016 -167317538 - L1MA6 LINE L1 -2424 3876 3538 1030 275 149 31 chr6 21962149 21962892 -167316662 - L1MEd LINE L1 -4880 1239 409 595 325 60 15 chr6 21962900 21963235 -167316319 - L1MEd LINE L1 -5759 360 11 587 311 109 0 chr6 21963244 21963482 -167316072 + L2 LINE L2 1823 2086 -1228 2085 134 3 0 chr6 21963654 21963946 -167315608 - AluSx SINE Alu -19 293 1 591 290 111 14 chr6 21964077 21964271 -167315283 + MIR SINE MIR 15 234 -28 1759 159 36 28 chr6 21964271 21964629 -167314925 - MER46B DNA MER2_type 0 236 1 591 290 111 14 chr6 21964629 21964651 -167314903 + MIR SINE MIR 234 252 -10 2505 82 0 0 chr6 21965020 21965324 -167314230 - AluSc SINE Alu -5 304 1 527 255 150 45 chr6 21965938 21966081 -167313473 - MER102b DNA MER1_type -1108 320 193 1931 133 3 3 chr6 21966081 21966367 -167313187 - AluSx SINE Alu -1 311 26 527 255 150 45 chr6 21966367 21966509 -167313045 - MER102b DNA MER1_type -1235 193 5 3202 19 5 0 chr6 21966899 21967269 -167312285 + L1PA4 LINE L1 5784 6155 0 258 254 52 45 chr6 21967354 21967488 -167312066 + MLT1J LTR MaLR 374 508 -3 23 0 0 0 chr6 21967496 21967519 -167312035 + AT_rich Low_complexity Low_complexity 1 23 0 690 176 109 114 chr6 21970473 21970849 -167308705 - LTR37B LTR ERV1 0 468 95 404 119 0 0 chr6 21970957 21971024 -167308530 - L1PA11 LINE L1 0 6174 6108 263 311 19 0 chr6 21971161 21971264 -167308290 - LTR37B LTR ERV1 -348 120 16 2113 186 89 43 chr6 21971299 21971782 -167307772 + MLT1D LTR MaLR 1 505 0 2151 118 7 3 chr6 21972303 21972599 -167306955 - AluSx SINE Alu -15 297 1 2159 145 3 0 chr6 21975424 21975735 -167303819 - AluSq SINE Alu 0 313 2 2210 104 0 13 chr6 21975762 21976071 -167303483 - AluY SINE Alu -6 305 1 2397 84 0 0 chr6 21976181 21976492 -167303062 - AluY SINE Alu 0 311 1 623 74 0 21 chr6 21976492 21976587 -167302967 - AluSg/x SINE Alu -3 306 214 2134 102 13 7 chr6 21976725 21977028 -167302526 + AluSc SINE Alu 1 305 -4 625 249 153 68 chr6 21977134 21977592 -167301962 - MLT1H LTR MaLR -9 540 44 354 316 63 57 chr6 21977970 21978128 -167301426 + MER91A DNA MER1_type 4 162 -34 263 77 0 77 chr6 21978205 21978257 -167301297 - MER5C DNA MER1_type -15 309 262 300 254 82 9 chr6 21978416 21978526 -167301028 - MER5C DNA MER1_type -201 123 6 838 246 12 74 chr6 21979095 21979158 -167300396 - MIR SINE MIR -3 259 194 2168 88 0 67 chr6 21979158 21979488 -167300066 - AluSg SINE Alu -2 308 1 838 246 12 74 chr6 21979488 21979680 -167299874 - MIR SINE MIR -68 194 20 225 239 0 0 chr6 21979924 21979970 -167299584 + L2 LINE L2 3255 3300 -13 400 263 8 8 chr6 21980330 21980448 -167299106 + HsTC2 DNA Tc2 1518 1635 -263 567 290 36 10 chr6 21980657 21980850 -167298704 - LTR33 LTR ERVL -315 206 9 * 639 207 70 18 chr6 21980844 21981071 -167298483 + HsTC2 DNA Tc2 1632 1870 -28 365 293 38 38 chr6 21981116 21981355 -167298199 - MLT1L LTR MaLR -8 607 369 1989 154 30 0 chr6 21981783 21982082 -167297472 - AluJb SINE Alu -4 308 1 367 304 22 7 chr6 21982082 21982217 -167297337 - LTR67 LTR ERVL -6 551 415 256 164 0 73 chr6 21982305 21982360 -167297194 + FRAM/FAM SINE Alu 1 41 -134 180 0 0 0 chr6 21982393 21982413 -167297141 + (CAA)n Simple_repeat Simple_repeat 2 21 0 356 299 48 30 chr6 21982485 21982652 -167296902 - LTR67 LTR ERVL -364 193 24 434 257 70 12 chr6 21983177 21983348 -167296206 - MIR SINE MIR 0 262 82 417 306 62 59 chr6 21987571 21987727 -167291827 + L2 LINE L2 2463 2617 -697 2029 134 7 7 chr6 21987727 21988026 -167291528 - AluJb SINE Alu -13 299 1 417 306 62 59 chr6 21988026 21988193 -167291361 + L2 LINE L2 2617 2787 -527 417 198 0 10 chr6 21988293 21988394 -167291160 - L1M4 LINE L1 -2110 4036 3937 351 268 173 25 chr6 21989755 21990113 -167289441 + L1ME4a LINE L1 5484 5894 -227 324 214 96 86 chr6 21990189 21990376 -167289178 + L1ME4a LINE L1 5932 6120 -1 185 302 0 23 chr6 21990484 21990527 -167289027 - L2 LINE L2 -28 3244 3203 * 439 355 55 11 chr6 21990493 21990676 -167288878 - MIR SINE MIR -31 231 41 22 35 0 0 chr6 21990744 21990773 -167288781 + AT_rich Low_complexity Low_complexity 1 29 0 554 239 76 35 chr6 21992996 21993193 -167286361 + L2 LINE L2 3109 3313 0 2315 108 3 0 chr6 21993206 21993511 -167286043 + AluSq SINE Alu 1 306 -7 343 227 43 64 chr6 21993634 21993775 -167285779 + MER104 DNA Tc2 28 165 -15 483 236 115 30 chr6 21993872 21994037 -167285517 - MER5A DNA MER1_type -4 185 7 1215 275 64 30 chr6 21994633 21995173 -167284381 + MLT1F1 LTR MaLR 11 567 0 246 326 69 29 chr6 21995183 21995358 -167284196 - MIR SINE MIR -67 195 14 397 359 29 6 chr6 21995375 21995545 -167284009 + MIR3 SINE MIR 32 205 -3 384 184 0 0 chr6 21997112 21997188 -167282366 - MER53 DNA DNA -113 76 1 238 284 15 15 chr6 21997224 21997291 -167282263 - MIR SINE MIR -125 83 17 698 248 44 26 chr6 21998059 21998285 -167281269 + L1ME1 LINE L1 5932 6161 -5 305 333 8 24 chr6 21998363 21998486 -167281068 + L3 LINE CR1 1030 1150 -427 302 318 246 17 chr6 21998487 21998723 -167280831 + L3 LINE CR1 1279 1568 -9 835 208 58 0 chr6 22000151 22000324 -167279230 - MER5A DNA MER1_type -6 183 1 197 250 39 39 chr6 22000407 22000459 -167279095 + MIR SINE MIR 18 69 -193 352 221 123 41 chr6 22001060 22001182 -167278372 - MIR SINE MIR -111 151 20 378 329 89 14 chr6 22001458 22001604 -167277950 - L2 LINE L2 0 3272 3116 308 361 101 12 chr6 22001851 22002020 -167277534 - L2 LINE L2 -220 3052 2869 217 384 75 8 chr6 22002459 22002592 -167276962 + MER5A DNA MER1_type 46 187 -2 23 33 0 0 chr6 22002657 22002687 -167276867 + AT_rich Low_complexity Low_complexity 1 30 0 1906 202 31 75 chr6 22002696 22003310 -167276244 - L1ME2 LINE L1 0 6164 5578 207 277 0 0 chr6 22005360 22005407 -167274147 + L2 LINE L2 3258 3304 -9 921 149 41 10 chr6 22005864 22006059 -167273495 + L1MB3 LINE L1 5289 5489 -691 672 174 19 7 chr6 22006064 22006219 -167273335 + GA-rich Low_complexity Low_complexity 3 159 0 3588 148 56 3 chr6 22006219 22006882 -167272672 + L1MB3 LINE L1 5484 6181 -2 2239 78 0 0 chr6 22006887 22007182 -167272372 - AluY SINE Alu 0 305 11 1199 205 73 80 chr6 22008609 22009033 -167270521 + MLT1J1 LTR MaLR 1 421 -25 295 269 13 0 chr6 22009043 22009121 -167270433 + MER69B DNA AcHobo 24 102 -1124 2625 241 123 14 chr6 22009125 22010023 -167269531 + MER69B DNA AcHobo 230 1224 -2 392 311 12 0 chr6 22010558 22010696 -167268858 - MIR SINE MIR -59 149 8 1960 138 3 0 chr6 22011087 22011401 -167268153 + AluSx SINE Alu 1 315 0 1261 230 94 40 chr6 22011484 22011858 -167267696 + MSTD LTR MaLR 1 394 -2 2051 122 24 113 chr6 22012801 22013218 -167266336 + MLT1B LTR MaLR 9 388 -2 2233 111 0 19 chr6 22013782 22014089 -167265465 + AluSc SINE Alu 1 301 -8 314 215 89 0 chr6 22014614 22014693 -167264861 - MER5A DNA MER1_type -95 94 9 22 0 0 0 chr6 22014822 22014844 -167264710 + AT_rich Low_complexity Low_complexity 1 22 0 247 233 75 15 chr6 22014971 22015104 -167264450 + L1MC/D LINE L1 5337 5477 -2331 290 289 33 25 chr6 22015174 22015292 -167264262 - MIR SINE MIR -65 143 32 267 200 9 55 chr6 22015458 22015568 -167263986 + (TA)n Simple_repeat Simple_repeat 2 106 0 451 286 62 49 chr6 22015651 22015955 -167263599 - L1ME4a LINE L1 -289 5832 5525 644 201 12 0 chr6 22016826 22016995 -167262559 + L1MA4 LINE L1 6122 6292 -8 222 62 0 0 chr6 22017288 22017320 -167262234 + (A)n Simple_repeat Simple_repeat 1 32 0 349 301 38 0 chr6 22018020 22018153 -167261401 - MIR3 SINE MIR -3 205 68 500 179 19 0 chr6 22018533 22018639 -167260915 + (CATA)n Simple_repeat Simple_repeat 2 109 0 2168 105 7 7 chr6 22018639 22018933 -167260621 - AluSq SINE Alu -19 294 1 465 298 48 27 chr6 22018959 22019147 -167260407 + MIR SINE MIR 1 192 -70 380 68 0 243 chr6 22020565 22020668 -167258886 + MADE1 DNA Mariner 1 78 -2 338 300 52 31 chr6 22020669 22020975 -167258579 - L2 LINE L2 -245 3027 2724 1535 218 65 40 chr6 22021007 22021453 -167258101 + MLT1C LTR MaLR 11 467 0 382 114 29 0 chr6 22021703 22021773 -167257781 + (TG)n Simple_repeat Simple_repeat 1 72 0 618 305 36 46 chr6 22023204 22023692 -167255862 - L1MC4a LINE L1 -753 5591 5486 207 326 79 11 chr6 22024878 22024942 -167254612 - L3 LINE CR1 -58 1519 1446 2175 111 14 3 chr6 22024942 22025239 -167254315 - AluSx SINE Alu -12 300 1 207 326 79 11 chr6 22025239 22025263 -167254291 - L3 LINE CR1 -131 1446 1425 298 272 56 16 chr6 22026787 22026912 -167252642 - MIR SINE MIR -62 200 71 5545 125 36 19 chr6 22027312 22027543 -167252011 + L1MA8 LINE L1 4680 4906 -1385 2349 174 47 2 chr6 22027543 22027951 -167251603 - MSTB LTR MaLR 0 426 1 5545 125 36 19 chr6 22027951 22028832 -167250722 + L1MA8 LINE L1 4906 5829 -462 2233 97 0 31 chr6 22028832 22028969 -167250585 + AluSx SINE Alu 1 141 -171 2298 95 3 0 chr6 22028969 22029264 -167250290 + AluY SINE Alu 1 296 -15 2233 97 0 31 chr6 22029264 22029447 -167250107 + AluSx SINE Alu 141 311 -1 5545 125 36 19 chr6 22029447 22029768 -167249786 + L1MA8 LINE L1 5829 6143 -148 867 156 25 0 chr6 22029912 22030072 -167249482 + L1MA8 LINE L1 6124 6287 -4 2208 128 0 0 chr6 22030083 22030387 -167249167 + AluSx SINE Alu 1 304 -8 451 224 75 9 chr6 22031179 22031343 -167248211 + MIR SINE MIR 20 192 -63 2081 173 68 5 chr6 22031622 22032021 -167247533 + MSTA LTR MaLR 5 428 0 1651 175 14 20 chr6 22032027 22032319 -167247235 - AluJo SINE Alu -13 299 10 3666 125 68 25 chr6 22032319 22033224 -167246330 + LTR12 LTR ERV1 3 714 0 463 286 54 112 chr6 22034655 22035103 -167244451 + L2 LINE L2 2809 3230 -42 26 30 0 0 chr6 22035163 22035196 -167244358 + AT_rich Low_complexity Low_complexity 1 33 0 469 183 70 9 chr6 22035317 22035432 -167244122 + MIR SINE MIR 79 200 -62 2653 68 0 0 chr6 22035637 22035946 -167243608 - AluSg SINE Alu -1 309 1 391 228 101 13 chr6 22036186 22036335 -167243219 + L1ME3A LINE L1 5913 6074 -96 207 69 0 0 chr6 22036402 22036431 -167243123 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 0 0 0 chr6 22036634 22036662 -167242892 + (TC)n Simple_repeat Simple_repeat 2 29 0 226 200 30 80 chr6 22037358 22037458 -167242096 + L2 LINE L2 2564 2658 -656 243 311 17 25 chr6 22037782 22037901 -167241653 + L2 LINE L2 3155 3272 0 263 238 70 98 chr6 22037905 22038048 -167241506 - MIR3 SINE MIR -50 158 20 181 233 47 35 chr6 22038067 22038153 -167241401 - L3b LINE CR1 -351 1232 1146 3633 170 32 17 chr6 22038496 22039219 -167240335 - L1MB4 LINE L1 -1 6179 5446 886 198 184 43 chr6 22040265 22040702 -167238852 + MLT1E1 LTR MaLR 1 580 -74 2041 101 18 0 chr6 22040775 22041051 -167238503 - AluSp SINE Alu -1 312 32 4269 137 98 75 chr6 22041052 22042043 -167237511 + pTR5 LTR ERV1 7 443 -271 187 53 26 26 chr6 22042043 22042081 -167237473 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4269 137 98 75 chr6 22042081 22042334 -167237220 + pTR5 LTR ERV1 443 689 -25 201 39 0 0 chr6 22043137 22043163 -167236391 + (TG)n Simple_repeat Simple_repeat 2 27 0 463 188 27 89 chr6 22043811 22043923 -167235631 + MLT1C LTR MaLR 1 105 -362 416 143 0 0 chr6 22043914 22043977 -167235577 + MLT1C LTR MaLR 290 352 -115 * 1740 157 3 42 chr6 22043979 22044291 -167235263 + MLT1B LTR MaLR 91 390 0 349 247 160 40 chr6 22044770 22044920 -167234634 - MER5A DNA MER1_type -9 180 13 294 277 45 23 chr6 22045794 22045932 -167233622 - MIR3 SINE MIR -22 186 45 238 262 47 84 chr6 22046114 22046221 -167233333 + MER5B DNA MER1_type 2 104 -74 * 321 183 28 4 chr6 22046220 22046330 -167233224 + MER5A DNA MER1_type 35 189 0 196 346 13 13 chr6 22046352 22046430 -167233124 + MER5B DNA MER1_type 56 133 -45 1479 249 25 6 chr6 22046750 22047108 -167232446 + MLT1A1 LTR MaLR 1 365 0 404 291 122 5 chr6 22047138 22047334 -167232220 + MIR SINE MIR 29 247 -15 2336 71 0 0 chr6 22048547 22048862 -167230692 + AluY SINE Alu 1 315 0 701 271 21 5 chr6 22049370 22049562 -167229992 - MIR SINE MIR -15 247 53 527 252 91 24 chr6 22049788 22049998 -167229556 - MLT1G1 LTR MaLR -269 326 103 261 0 0 0 chr6 22050001 22050030 -167229524 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 191 326 14 64 chr6 22050030 22050171 -167229383 - L2 LINE L2 -428 2886 2753 186 350 88 10 chr6 22051908 22052102 -167227452 - L2 LINE L2 -482 2832 2624 4858 111 0 0 chr6 22052115 22052792 -167226762 - L1PA13 LINE L1 -39 6124 5448 2396 281 24 25 chr6 22053015 22053690 -167225864 - MER115 DNA AcHobo -17 676 3 195 139 0 0 chr6 22053723 22053759 -167225795 + (A)n Simple_repeat Simple_repeat 1 36 0 258 312 118 0 chr6 22054585 22054678 -167224876 - MIR SINE MIR -110 152 49 214 282 209 9 chr6 22056488 22056598 -167222956 + MIR SINE MIR 87 218 -44 1343 183 48 41 chr6 22056822 22057112 -167222442 + AluJo SINE Alu 1 292 -20 894 144 63 0 chr6 22057645 22057819 -167221735 - L1MA7 LINE L1 -3 6288 6104 2357 117 10 0 chr6 22058359 22058668 -167220886 - AluSx SINE Alu 0 312 1 2278 100 0 17 chr6 22060981 22061281 -167218273 + AluSq SINE Alu 1 295 -18 221 57 29 0 chr6 22061356 22061391 -167218163 + (CA)n Simple_repeat Simple_repeat 1 36 0 231 36 0 0 chr6 22061906 22061934 -167217620 + (GA)n Simple_repeat Simple_repeat 1 28 0 2326 114 0 0 chr6 22062250 22062556 -167216998 + AluSx SINE Alu 1 306 -6 1519 190 13 30 chr6 22063279 22063584 -167215970 + AluJo SINE Alu 1 300 -12 288 0 0 0 chr6 22064143 22064175 -167215379 + (TG)n Simple_repeat Simple_repeat 1 32 0 234 0 0 0 chr6 22064174 22064200 -167215354 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 884 149 0 8 chr6 22064320 22064476 -167215078 + AluJb SINE Alu 155 309 0 2380 100 0 0 chr6 22066729 22067039 -167212515 + AluSx SINE Alu 1 310 -2 542 308 110 9 chr6 22068342 22068569 -167210985 + MIR SINE MIR 12 261 -1 240 35 0 0 chr6 22069293 22069322 -167210232 + (ATG)n Simple_repeat Simple_repeat 1 29 0 405 58 0 0 chr6 22069889 22069941 -167209613 + (CA)n Simple_repeat Simple_repeat 2 53 0 1686 186 223 39 chr6 22069946 22070403 -167209151 + MLT1F LTR MaLR 2 542 0 1705 186 7 10 chr6 22070643 22070938 -167208616 - AluJo SINE Alu -18 294 1 1106 179 115 8 chr6 22071795 22072030 -167207524 - LOR1a LTR ERV1 0 497 238 379 234 206 9 chr6 22074147 22074254 -167205300 + MIR SINE MIR 20 147 -115 212 172 52 0 chr6 22075064 22075122 -167204432 + (TA)n Simple_repeat Simple_repeat 1 61 0 2118 256 46 11 chr6 22075122 22075681 -167203873 + L1MD2 LINE L1 5333 5916 -443 2348 165 64 12 chr6 22075681 22076086 -167203468 - MSTB LTR MaLR 0 426 1 2118 256 46 11 chr6 22076086 22076136 -167203418 + L1MD2 LINE L1 5916 5963 -396 815 155 14 0 chr6 22076295 22076437 -167203117 - L1MA6 LINE L1 -2 6298 6155 245 296 0 37 chr6 22076546 22076627 -167202927 + L2 LINE L2 3182 3259 -13 183 344 33 0 chr6 22077040 22077101 -167202453 - L3 LINE CR1 -1 1576 1514 216 163 0 0 chr6 22077267 22077310 -167202244 + (TTG)n Simple_repeat Simple_repeat 3 45 0 299 291 28 44 chr6 22078680 22078862 -167200692 + L1ME4a LINE L1 5728 5906 -215 2177 205 93 17 chr6 22079104 22079587 -167199967 + MLT2B1 LTR ERVL 1 520 0 230 271 0 24 chr6 22080571 22080656 -167198898 + HAL1b LINE L1 1175 1257 -91 1575 192 0 0 chr6 22080660 22080921 -167198633 + Tigger7 DNA MER2_type 4 264 -469 594 184 0 0 chr6 22080924 22081022 -167198532 + Tigger7 DNA MER2_type 2490 2587 0 263 279 35 0 chr6 22081102 22081188 -167198366 - L2 LINE L2 -1 3271 3183 332 260 24 65 chr6 22081217 22081340 -167198214 - L2 LINE L2 -595 2719 2602 1839 170 150 42 chr6 22081379 22081831 -167197723 - MLT1D LTR MaLR -1 504 4 1778 160 38 7 chr6 22081866 22082159 -167197395 - AluJb SINE Alu -10 302 1 536 309 14 24 chr6 22082420 22082627 -167196927 - MIR SINE MIR -12 250 46 316 285 16 24 chr6 22082899 22083022 -167196532 + MIR SINE MIR 64 185 -77 214 234 21 0 chr6 22083196 22083243 -167196311 - L2 LINE L2 -6 3266 3219 1147 150 26 0 chr6 22083290 22083483 -167196071 + L1P5 LINE L1 3 200 -6663 3112 151 13 17 chr6 22083483 22084007 -167195547 + L1P5 LINE L1 634 1155 -5708 15037 197 43 21 chr6 22084009 22088684 -167190870 + L1P5 LINE L1 1311 6091 -771 7684 27 0 0 chr6 22088672 22090152 -167189402 + L1PA3 LINE L1 4695 6174 0 * 3232 82 7 7 chr6 22090152 22090581 -167188973 + L1P5 LINE L1 6079 6507 -360 218 220 17 0 chr6 22090581 22090640 -167188914 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 252 220 0 0 chr6 22090674 22090724 -167188830 + L1MC4 LINE L1 6654 6703 -1339 * 273 234 0 0 chr6 22090682 22090746 -167188808 - L1MC4 LINE L1 -1339 6703 6640 250 93 0 0 chr6 22090748 22090791 -167188763 - LTR66 LTR ERVL -174 436 394 2738 98 11 0 chr6 22090801 22091158 -167188396 + L1PB1 LINE L1 5791 6151 0 885 298 174 13 chr6 22092144 22092674 -167186880 + L2 LINE L2 2091 2705 -609 3105 179 52 92 chr6 22092677 22093524 -167186030 - L1MC4 LINE L1 -9 8033 7221 536 358 54 15 chr6 22093532 22093848 -167185706 + L2 LINE L2 2725 3053 -260 607 236 60 6 chr6 22094047 22094229 -167185325 + HAL1 LINE L1 1227 1418 -1089 1204 245 129 68 chr6 22094311 22095141 -167184413 + HAL1 LINE L1 1548 2428 -79 438 33 115 0 chr6 22095401 22095462 -167184092 - MADE1 DNA Mariner 0 80 13 727 236 66 39 chr6 22095631 22095889 -167183665 - L1ME3A LINE L1 -27 6143 5879 2557 268 104 36 chr6 22095919 22097184 -167182370 - L1ME3A LINE L1 -1825 4321 2970 25 31 0 0 chr6 22097229 22097261 -167182293 + AT_rich Low_complexity Low_complexity 1 32 0 2225 123 0 0 chr6 22097316 22097626 -167181928 - AluY SINE Alu -1 310 1 993 279 108 16 chr6 22098045 22098478 -167181076 + LTR16C LTR ERVL 18 490 -1 1925 130 22 0 chr6 22098666 22098969 -167180585 - AluSx SINE Alu 0 309 1 292 328 18 47 chr6 22099033 22099204 -167180350 + MIR SINE MIR 47 212 -50 2095 114 0 4 chr6 22099652 22099933 -167179621 + AluSx SINE Alu 1 280 -32 228 361 34 0 chr6 22100160 22100279 -167179275 - MIR3 SINE MIR -1 207 85 219 355 65 18 chr6 22100342 22100511 -167179043 - MIR SINE MIR -66 196 20 2272 92 0 3 chr6 22100666 22100961 -167178593 + AluSg SINE Alu 10 303 -7 222 118 0 0 chr6 22101008 22101042 -167178512 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 207 100 0 0 chr6 22102360 22102390 -167177164 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 386 252 30 23 chr6 22102991 22103122 -167176432 + L1ME4a LINE L1 5738 5869 -252 2075 122 3 3 chr6 22103255 22103543 -167176011 - AluSg SINE Alu -22 288 1 249 313 35 17 chr6 22103569 22103684 -167175870 + L1MC/D LINE L1 5445 5561 -2247 2242 138 32 19 chr6 22103849 22104016 -167175538 + MLT1B LTR MaLR 4 167 -223 2221 111 7 7 chr6 22104016 22104322 -167175232 + AluSx SINE Alu 1 306 -6 2242 138 32 19 chr6 22104322 22104525 -167175029 + MLT1B LTR MaLR 167 379 -11 268 275 0 84 chr6 22106015 22106146 -167173408 + MIR SINE MIR 22 141 -67 550 226 8 16 chr6 22106159 22106283 -167173271 + MER5B DNA MER1_type 1 123 -55 343 263 88 9 chr6 22107185 22107299 -167172255 + MIR SINE MIR 26 148 -114 214 349 64 0 chr6 22107834 22107943 -167171611 + L2 LINE L2 3157 3272 0 297 330 43 0 chr6 22108161 22108255 -167171299 - L2 LINE L2 -2 3270 3173 290 227 53 27 chr6 22108249 22108324 -167171230 + MER5B DNA MER1_type 96 172 -6 * 2945 0 0 0 chr6 22110712 22111023 -167168531 + AluYa5 SINE Alu 1 311 0 7460 117 52 29 chr6 22111650 22112274 -167167280 + Tigger3b DNA MER2_type 3 611 -2417 578 103 0 23 chr6 22112274 22112290 -167167264 - AluSp/q SINE Alu 0 313 298 241 59 0 0 chr6 22112290 22112324 -167167230 + (TTTG)n Simple_repeat Simple_repeat 3 88 0 578 103 0 23 chr6 22112324 22112394 -167167160 - AluSp/q SINE Alu -15 298 217 2107 104 18 0 chr6 22112325 22112605 -167166949 - AluSp SINE Alu -28 285 1 7460 117 52 29 chr6 22112605 22113163 -167166391 + Tigger3b DNA MER2_type 822 1231 0 358 305 8 15 chr6 22113883 22114014 -167165540 + MER94 DNA DNA 5 134 0 266 313 146 0 chr6 22114235 22114331 -167165223 - L2 LINE L2 -12 3260 3151 1629 147 9 59 chr6 22114361 22114681 -167164873 + AluJo SINE Alu 1 304 -8 889 199 0 79 chr6 22115122 22115308 -167164246 - MER3 DNA MER1_type -10 199 31 2184 113 0 3 chr6 22115308 22115600 -167163954 - AluSg SINE Alu -19 291 1 889 199 0 79 chr6 22115600 22115629 -167163925 - MER3 DNA MER1_type -178 31 1 260 321 71 9 chr6 22115989 22116101 -167163453 + MIR SINE MIR 48 166 -96 341 330 74 83 chr6 22116224 22116563 -167162991 + L2 LINE L2 2910 3245 -27 590 216 0 16 chr6 22117001 22117126 -167162428 - MER3 DNA MER1_type -10 199 77 485 261 22 72 chr6 22117608 22117788 -167161766 - MIR SINE MIR -10 252 82 2415 78 0 3 chr6 22118781 22119087 -167160467 - AluSg SINE Alu -5 305 1 1913 161 0 10 chr6 22119095 22119394 -167160160 - AluJo SINE Alu -16 296 1 198 0 0 0 chr6 22119409 22119431 -167160123 + (TAA)n Simple_repeat Simple_repeat 2 23 0 262 265 0 39 chr6 22119698 22119800 -167159754 - L1ME LINE L1 -377 5744 5647 454 264 36 7 chr6 22119841 22119981 -167159573 - MIR SINE MIR -6 256 113 624 91 0 0 chr6 22120684 22120772 -167158782 + (TA)n Simple_repeat Simple_repeat 2 89 0 455 229 51 0 chr6 22120791 22120909 -167158645 + L2 LINE L2 3190 3313 0 241 57 57 43 chr6 22122668 22122738 -167156816 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 581 249 65 54 chr6 22123446 22123479 -167156075 + MIR SINE MIR 2 33 -229 2241 119 0 3 chr6 22123479 22123781 -167155773 + AluSx SINE Alu 1 301 -11 581 249 65 54 chr6 22123781 22123932 -167155622 + MIR SINE MIR 33 188 -74 2361 90 3 0 chr6 22124928 22125238 -167154316 + AluSq SINE Alu 1 311 -2 207 277 0 0 chr6 22125375 22125422 -167154132 + GA-rich Low_complexity Low_complexity 3 49 0 181 214 24 0 chr6 22126139 22126181 -167153373 + L2 LINE L2 3263 3305 -8 182 314 120 39 chr6 22127811 22128094 -167151460 - L2 LINE L2 -832 2482 2177 294 29 0 0 chr6 22128868 22128903 -167150651 + (TG)n Simple_repeat Simple_repeat 2 36 0 501 341 24 20 chr6 22128990 22129236 -167150318 + MIR SINE MIR 16 262 0 222 319 56 76 chr6 22129221 22129304 -167150250 - MIR SINE MIR -98 164 84 * 1894 96 4 11 chr6 22129304 22129565 -167149989 + AluSq SINE Alu 40 298 -15 222 319 56 76 chr6 22129565 22129625 -167149929 - MIR SINE MIR -178 84 24 2333 97 0 0 chr6 22130761 22131051 -167148503 + AluSq SINE Alu 1 290 -23 1166 129 36 0 chr6 22131519 22131713 -167147841 + L1MB3 LINE L1 5983 6183 0 1668 190 7 0 chr6 22131718 22132008 -167147546 - AluSx SINE Alu -20 292 1 30 0 0 0 chr6 22132008 22132038 -167147516 + AT_rich Low_complexity Low_complexity 1 30 0 2323 78 3 7 chr6 22132653 22132948 -167146606 + AluY SINE Alu 1 294 -17 320 304 9 9 chr6 22134151 22134266 -167145288 + MIR SINE MIR 129 243 -19 3436 136 23 11 chr6 22136260 22136781 -167142773 + MER1A DNA MER1_type 1 527 0 783 285 29 22 chr6 22137291 22137565 -167141989 + L1MC4a LINE L1 5597 5872 -1936 22 0 0 0 chr6 22138117 22138139 -167141415 + AT_rich Low_complexity Low_complexity 1 22 0 616 216 27 0 chr6 22138702 22138813 -167140741 - MER81 DNA DNA 0 114 1 234 0 0 0 chr6 22139227 22139253 -167140301 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2297 72 0 4 chr6 22139253 22139531 -167140023 - AluSg SINE Alu -33 277 1 3071 76 0 13 chr6 22140122 22140502 -167139052 + THE1C LTR MaLR 1 375 0 464 295 90 6 chr6 22140693 22140788 -167138766 + MER5A DNA MER1_type 15 129 -60 1711 169 8 0 chr6 22140788 22141055 -167138499 - AluJb SINE Alu -39 273 5 464 295 90 6 chr6 22141055 22141115 -167138439 + MER5A DNA MER1_type 129 183 -6 1385 213 115 18 chr6 22141355 22141755 -167137799 + L1M4 LINE L1 4862 5300 -846 984 272 98 39 chr6 22142697 22143135 -167136419 + LTR16B LTR ERVL 1 464 0 24 53 0 0 chr6 22143355 22143393 -167136161 + AT_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr6 22143778 22143802 -167135752 + (T)n Simple_repeat Simple_repeat 1 24 0 719 239 150 45 chr6 22145820 22146133 -167133421 - L1ME4a LINE L1 -283 5838 5496 234 0 0 0 chr6 22146596 22146622 -167132932 + (CA)n Simple_repeat Simple_repeat 2 27 0 1808 169 52 92 chr6 22147636 22147999 -167131555 - MLT1C LTR MaLR -3 464 123 1616 141 85 7 chr6 22147999 22148282 -167131272 - AluSx SINE Alu -7 305 1 1808 169 52 92 chr6 22148282 22148396 -167131158 - MLT1C LTR MaLR -344 123 6 2246 127 3 3 chr6 22148425 22148733 -167130821 - AluJb SINE Alu -4 308 1 3094 147 55 6 chr6 22149220 22149711 -167129843 + MLT2B2 LTR ERVL 1 515 0 436 325 18 12 chr6 22149952 22150115 -167129439 - L2 LINE L2 -214 3058 2895 1774 151 6 80 chr6 22150228 22150565 -167128989 - AluJo SINE Alu 0 312 1 219 268 145 14 chr6 22150572 22150710 -167128844 - L2 LINE L2 -620 2694 2539 196 264 14 56 chr6 22151123 22151195 -167128359 - L2 LINE L2 -19 3294 3226 2150 122 7 0 chr6 22151330 22151624 -167127930 - AluSx SINE Alu -12 300 5 1657 104 97 15 chr6 22152391 22152650 -167126904 + L1PA13 LINE L1 5881 6160 -3 1109 205 29 9 chr6 22152688 22152898 -167126656 - MER58A DNA MER1_type 0 224 11 181 270 45 45 chr6 22153305 22153387 -167126167 + L2 LINE L2 2536 2617 -697 293 270 79 0 chr6 22153387 22153476 -167126078 - MER5B DNA MER1_type 0 178 83 332 260 130 18 chr6 22153614 22153783 -167125771 + L2 LINE L2 1972 2159 -1155 1580 175 80 30 chr6 22153963 22154301 -167125253 + MLT1A1 LTR MaLR 11 365 0 260 277 0 46 chr6 22154314 22154379 -167125175 + L2 LINE L2 3138 3199 -73 252 367 44 29 chr6 22154423 22154735 -167124819 + L2 LINE L2 2725 3038 -234 200 268 10 62 chr6 22154877 22154974 -167124580 + L2 LINE L2 3180 3271 -1 2769 90 31 8 chr6 22155770 22156126 -167123428 + THE1B LTR MaLR 1 364 0 359 247 184 32 chr6 22156153 22156236 -167123318 + L1ME3A LINE L1 5938 6007 -163 2244 101 7 0 chr6 22156236 22156532 -167123022 + AluSp SINE Alu 1 298 -15 359 247 184 32 chr6 22156532 22156606 -167122948 + L1ME3A LINE L1 6007 6119 -51 24 77 0 0 chr6 22156677 22156729 -167122825 + AT_rich Low_complexity Low_complexity 1 52 0 1846 169 10 3 chr6 22157016 22157306 -167122248 + AluSx SINE Alu 1 292 -20 220 267 205 31 chr6 22157415 22157576 -167121978 - MIR3 SINE MIR 0 208 20 2414 87 0 10 chr6 22157699 22158011 -167121543 + AluSc SINE Alu 1 309 0 562 231 8 8 chr6 22158823 22158940 -167120614 - L2 LINE L2 -2 3311 3195 319 257 155 34 chr6 22159113 22159143 -167120411 - L1MA10 LINE L1 0 6334 6305 441 257 134 53 chr6 22159143 22159427 -167120127 - L1ME1 LINE L1 -47 6119 5813 2076 108 3 63 chr6 22159428 22159760 -167119794 - AluSx SINE Alu 0 312 1 256 262 0 0 chr6 22159768 22159829 -167119725 - L1ME1 LINE L1 -398 5764 5704 2164 114 0 19 chr6 22160917 22161232 -167118322 + AluSx SINE Alu 1 309 -3 240 59 0 0 chr6 22161234 22161268 -167118286 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2395 43 0 7 chr6 22161687 22162012 -167117542 - AluY SINE Alu 0 323 1 2397 96 0 3 chr6 22163128 22163441 -167116113 + AluSx SINE Alu 1 312 0 953 203 0 36 chr6 22164018 22164210 -167115344 + MER5A DNA MER1_type 3 187 -2 296 304 0 0 chr6 22164357 22164449 -167115105 + MIR3 SINE MIR 112 203 -5 1134 215 35 101 chr6 22164470 22164865 -167114689 + MER93a LTR ERV1 7 374 -28 2526 50 0 10 chr6 22164865 22165167 -167114387 + AluY SINE Alu 1 299 -12 1134 215 35 101 chr6 22165167 22165195 -167114359 + MER93a LTR ERV1 374 402 0 554 196 0 75 chr6 22165468 22165601 -167113953 + L1M3 LINE L1 5430 5552 -631 * 1064 43 51 0 chr6 22165588 22165726 -167113828 - L1P LINE L1 -1761 4385 4241 970 64 0 0 chr6 22165718 22165843 -167113711 + L1P LINE L1 5109 5233 -913 * 1429 199 18 31 chr6 22165879 22166165 -167113389 + AluJo SINE Alu 1 282 -30 2154 127 0 0 chr6 22166759 22167059 -167112495 + AluSx SINE Alu 8 307 -5 3134 176 11 5 chr6 22167081 22168012 -167111542 + L1MA6 LINE L1 4769 5706 -585 1483 132 9 0 chr6 22168021 22168234 -167111320 + Charlie3 DNA MER1_type 1 215 -2495 1763 159 25 6 chr6 22168234 22168561 -167110993 + L1MA6 LINE L1 5719 6051 -249 771 95 35 9 chr6 22168561 22168674 -167110880 + L1MA7 LINE L1 6173 6291 0 798 154 60 0 chr6 22169326 22169475 -167110079 + L1 LINE L1 5151 5308 -838 3899 120 2 13 chr6 22169853 22170386 -167109168 + MER1A DNA MER1_type 1 527 0 499 310 75 5 chr6 22170412 22170625 -167108929 - MIR SINE MIR 0 262 35 2129 109 45 79 chr6 22170710 22171114 -167108440 - MLT1B LTR MaLR 0 390 1 276 221 0 159 chr6 22171411 22171524 -167108030 - MIR SINE MIR 0 262 168 608 293 52 9 chr6 22172273 22172485 -167107069 - MIR SINE MIR -8 254 34 448 244 16 31 chr6 22172517 22172644 -167106910 - MIR SINE MIR -63 145 21 347 232 58 7 chr6 22172913 22173053 -167106501 + (TA)n Simple_repeat Simple_repeat 1 151 -12 309 26 0 0 chr6 22173053 22173091 -167106463 + (CA)n Simple_repeat Simple_repeat 2 39 0 347 232 58 7 chr6 22173091 22173105 -167106449 + (TA)n Simple_repeat Simple_repeat 151 163 0 203 307 93 0 chr6 22173226 22173301 -167106253 + MIR SINE MIR 143 224 -38 302 241 15 144 chr6 22173381 22173576 -167105978 + MER5B DNA MER1_type 7 176 -2 2255 131 39 19 chr6 22173638 22173997 -167105557 + MER47A DNA MER2_type 1 366 0 297 286 0 24 chr6 22174041 22174125 -167105429 - MIR3 SINE MIR -34 174 93 2259 120 0 0 chr6 22174339 22174639 -167104915 + AluSx SINE Alu 1 300 -12 244 301 93 11 chr6 22174972 22175155 -167104399 - L1MC4a LINE L1 -1818 5990 5793 1754 165 26 23 chr6 22175543 22175852 -167103702 + AluJo SINE Alu 2 311 -1 207 0 0 0 chr6 22175862 22175885 -167103669 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 698 289 134 21 chr6 22176028 22176401 -167103153 - L1MC4a LINE L1 -2019 5789 5375 598 306 112 9 chr6 22176523 22176755 -167102799 + MIR SINE MIR 7 262 0 968 141 0 0 chr6 22177195 22177337 -167102217 + AluSg/x SINE Alu 133 274 -36 318 26 0 0 chr6 22177342 22177381 -167102173 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 702 203 0 16 chr6 22177381 22177563 -167101991 + GA-rich Low_complexity Low_complexity 2 180 0 581 231 13 0 chr6 22177573 22177729 -167101825 + G-rich Low_complexity Low_complexity 4 161 0 189 147 0 0 chr6 22178486 22178520 -167101034 + (A)n Simple_repeat Simple_repeat 1 34 0 715 286 113 59 chr6 22178773 22179536 -167100018 + L2 LINE L2 1859 2662 -652 451 261 124 89 chr6 22179511 22179768 -167099786 + L2 LINE L2 2985 3250 -22 * 351 0 0 0 chr6 22179771 22179810 -167099744 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1814 119 31 55 chr6 22180133 22180454 -167099100 + AluJo SINE Alu 1 314 0 1915 164 3 0 chr6 22180630 22180979 -167098575 + AluJo SINE Alu 1 350 0 1820 139 15 0 chr6 22181033 22181300 -167098254 + AluSg SINE Alu 3 273 -37 219 36 0 0 chr6 22181304 22181332 -167098222 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2931 120 31 2 chr6 22181717 22182133 -167097421 + MSTA LTR MaLR 1 428 0 2155 128 3 0 chr6 22182547 22182853 -167096701 + AluSx SINE Alu 1 307 -5 288 306 71 20 chr6 22183007 22183105 -167096449 + L2 LINE L2 3139 3241 -31 2810 184 97 14 chr6 22183107 22183663 -167095891 - MER7C DNA MER2_type 0 602 1 25 31 0 0 chr6 22184026 22184058 -167095496 + AT_rich Low_complexity Low_complexity 1 32 0 1567 174 0 66 chr6 22184133 22184316 -167095238 - AluJo SINE Alu -16 296 102 210 37 0 0 chr6 22184316 22184343 -167095211 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1867 121 0 81 chr6 22184343 22184650 -167094904 - AluSx SINE Alu -30 282 1 1567 174 0 66 chr6 22184650 22184782 -167094772 - AluJo SINE Alu -208 104 1 1770 188 0 0 chr6 22184884 22185176 -167094378 + AluJo SINE Alu 5 296 -16 212 356 55 0 chr6 22185275 22185348 -167094206 + MIR SINE MIR 1 77 -185 2181 108 7 7 chr6 22185507 22185802 -167093752 - AluSx SINE Alu -17 295 1 827 171 0 0 chr6 22186241 22186370 -167093184 - FLAM_C SINE Alu -12 131 3 2338 67 0 3 chr6 22186392 22186677 -167092877 + AluY SINE Alu 23 306 -5 23 0 0 0 chr6 22187505 22187528 -167092026 + AT_rich Low_complexity Low_complexity 1 23 0 1425 62 28 6 chr6 22187811 22187988 -167091566 - L1PA11 LINE L1 0 6174 5994 192 274 0 0 chr6 22188004 22188055 -167091499 - MIR SINE MIR -44 218 168 4612 86 8 18 chr6 22188200 22188828 -167090726 - L1PA11 LINE L1 -187 5987 5366 1139 157 58 4 chr6 22191007 22191321 -167088233 - MLT1A1 LTR MaLR 0 365 1 2905 88 3 0 chr6 22192638 22192992 -167086562 - THE1A LTR MaLR 0 355 1 288 0 0 0 chr6 22193759 22193791 -167085763 + (TG)n Simple_repeat Simple_repeat 2 33 0 1625 160 18 32 chr6 22193848 22194130 -167085424 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr6 22194131 22194151 -167085403 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1803 178 82 21 chr6 22194157 22194545 -167085009 + MLT2D LTR ERVL 1 412 -2 478 278 42 14 chr6 22194611 22194755 -167084799 - MIR SINE MIR -47 215 68 1626 165 8 4 chr6 22194791 22195051 -167084503 + AluJo SINE Alu 14 274 -38 192 77 0 0 chr6 22195054 22195080 -167084474 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 220 293 120 0 chr6 22196128 22196203 -167083351 + MIR SINE MIR 66 149 -59 1869 147 25 0 chr6 22196598 22196884 -167082670 + AluJb SINE Alu 11 303 -9 4488 91 16 4 chr6 22197277 22197839 -167081715 - MER61E LTR ERV1 0 569 1 2993 132 29 25 chr6 22198162 22198276 -167081278 - L1MA8 LINE L1 -56 6235 6123 1245 157 0 0 chr6 22198276 22198442 -167081112 - FAM SINE Alu -8 167 2 2993 132 29 25 chr6 22198442 22198848 -167080706 - L1MA8 LINE L1 -168 6123 5713 2221 105 6 16 chr6 22198858 22199171 -167080383 - AluSg SINE Alu 0 310 1 482 271 150 19 chr6 22199720 22199927 -167079627 - L3 LINE CR1 -108 1469 1236 1040 246 66 22 chr6 22199927 22200270 -167079284 + MSTD LTR MaLR 1 396 0 482 274 16 59 chr6 22200287 22200473 -167079081 - L3 LINE CR1 -358 1219 1042 477 295 38 1 chr6 22201588 22201757 -167077797 - MIR SINE MIR -63 145 20 2716 26 0 3 chr6 22201874 22202184 -167077370 - AluY SINE Alu -2 309 1 2415 90 0 0 chr6 22202483 22202783 -167076771 - AluSc SINE Alu -9 300 1 22 0 0 0 chr6 22202841 22202863 -167076691 + AT_rich Low_complexity Low_complexity 1 22 0 3798 161 106 126 chr6 22203019 22203551 -167076003 - L1MC3 LINE L1 0 7785 7244 318 266 18 33 chr6 22203551 22203685 -167075869 - MLT1F1 LTR MaLR -406 143 45 3798 161 106 126 chr6 22203685 22203837 -167075717 - L1MC3 LINE L1 -541 7244 7090 1785 173 0 3 chr6 22203837 22204126 -167075428 - AluJb SINE Alu -19 293 6 3798 161 106 126 chr6 22204126 22204484 -167075070 - L1MC3 LINE L1 -695 7090 6634 282 56 0 0 chr6 22204484 22204520 -167075034 + (TG)n Simple_repeat Simple_repeat 1 36 0 3798 161 106 126 chr6 22204520 22204609 -167074945 - L1MC3 LINE L1 -1151 6634 6545 378 338 56 5 chr6 22204990 22205206 -167074348 + L1MEd LINE L1 497 723 -5396 * 891 163 48 122 chr6 22205203 22205459 -167074095 + L1MB8 LINE L1 5874 6107 -71 2326 103 0 3 chr6 22205459 22205771 -167073783 + AluSq SINE Alu 3 313 0 891 163 48 122 chr6 22205771 22205808 -167073746 + L1MB8 LINE L1 6107 6145 -33 898 209 44 0 chr6 22205816 22205998 -167073556 + L1MD3 LINE L1 7757 7946 -49 749 157 0 25 chr6 22205999 22206120 -167073434 - FLAM_A SINE Alu -15 127 10 4248 90 11 45 chr6 22206121 22206741 -167072813 + MER4A LTR ERV1 2 600 0 281 95 0 32 chr6 22206753 22206816 -167072738 + L1MD3 LINE L1 7935 7995 0 2272 115 3 6 chr6 22206823 22207136 -167072418 + AluSx SINE Alu 1 312 0 2337 166 20 5 chr6 22207744 22208141 -167071413 + MER57A LTR ERV1 1 403 0 2304 105 0 0 chr6 22208566 22208860 -167070694 + AluSg SINE Alu 1 294 -16 2556 148 32 17 chr6 22209683 22210088 -167069466 + LTR57 LTR ERVL 1 411 0 198 167 0 0 chr6 22210210 22210246 -167069308 + GA-rich Low_complexity Low_complexity 3 38 0 2247 107 0 3 chr6 22210462 22210760 -167068794 - AluSx SINE Alu -15 297 1 35 78 0 0 chr6 22210787 22210864 -167068690 + AT_rich Low_complexity Low_complexity 1 77 0 22 80 0 0 chr6 22211079 22211129 -167068425 + AT_rich Low_complexity Low_complexity 1 50 0 1003 111 0 15 chr6 22211900 22212035 -167067519 + FLAM_C SINE Alu 1 133 0 1675 176 181 2 chr6 22212543 22212964 -167066590 + LTR54B LTR ERV1 1 496 -2 200 293 126 52 chr6 22213464 22213655 -167065899 - L2 LINE L2 -221 3051 2847 280 315 108 0 chr6 22213660 22213790 -167065764 + MIR SINE MIR 3 146 -116 1788 191 0 7 chr6 22213793 22214096 -167065458 + AluJo SINE Alu 1 301 -11 225 192 19 19 chr6 22214096 22214148 -167065406 + GA-rich Low_complexity Low_complexity 1 52 0 2353 106 0 0 chr6 22215050 22215352 -167064202 - AluSx SINE Alu -10 302 1 209 274 232 0 chr6 22216220 22216315 -167063239 - MER5A DNA MER1_type -1 188 72 795 190 37 0 chr6 22216379 22216542 -167063012 + MER58 DNA MER1_type 28 196 -145 280 283 58 17 chr6 22216779 22216899 -167062655 + L2 LINE L2 3179 3303 -10 2398 78 0 0 chr6 22217044 22217339 -167062215 + AluSg SINE Alu 1 295 -15 365 289 56 0 chr6 22218845 22218987 -167060567 + LTR33 LTR ERVL 364 513 -8 357 210 51 58 chr6 22219035 22219173 -167060381 - MIR SINE MIR -88 174 38 267 31 0 0 chr6 22219454 22219486 -167060068 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 315 0 0 0 chr6 22220848 22220883 -167058671 + (CA)n Simple_repeat Simple_repeat 2 36 0 226 234 0 16 chr6 22222530 22222594 -167056960 + (CA)n Simple_repeat Simple_repeat 1 63 0 257 200 22 33 chr6 22222916 22223096 -167056458 + (TA)n Simple_repeat Simple_repeat 1 178 0 2279 99 10 0 chr6 22223185 22223487 -167056067 + AluSx SINE Alu 1 305 -7 191 336 64 0 chr6 22223783 22223893 -167055661 - MIR SINE MIR -50 212 96 405 244 0 22 chr6 22225374 22225464 -167054090 + AluS SINE Alu 4 91 -221 348 309 8 8 chr6 22225465 22225588 -167053966 + MIR SINE MIR 34 156 -106 2363 86 17 0 chr6 22225868 22226169 -167053385 + AluSp SINE Alu 1 306 -7 1195 289 42 27 chr6 22227396 22228162 -167051392 - L2 LINE L2 -7 3306 2534 912 169 28 89 chr6 22228179 22228223 -167051331 - MLT1A1 LTR MaLR 0 365 320 2240 105 7 0 chr6 22228223 22228518 -167051036 + AluSx SINE Alu 1 297 -15 912 169 28 89 chr6 22228518 22228686 -167050868 - MLT1A1 LTR MaLR -45 320 166 1102 114 0 72 chr6 22228699 22228892 -167050662 - AluSg/x SINE Alu 0 310 132 2467 91 3 0 chr6 22228892 22229201 -167050353 - AluSp SINE Alu -3 310 1 864 168 27 0 chr6 22229204 22229353 -167050201 - MLT1A1 LTR MaLR -212 153 1 1531 206 59 78 chr6 22230396 22230800 -167048754 + MER39 LTR ERV1 167 707 0 26 74 0 0 chr6 22231000 22231054 -167048500 + AT_rich Low_complexity Low_complexity 1 54 0 2127 120 7 3 chr6 22231054 22231355 -167048199 - AluSx SINE Alu -10 302 1 302 134 15 0 chr6 22231360 22231427 -167048127 + (TA)n Simple_repeat Simple_repeat 1 68 0 1102 135 0 45 chr6 22231454 22231632 -167047922 + FRAM SINE Alu 1 166 -10 2122 238 104 33 chr6 22231740 22232690 -167046864 + Charlie2a DNA MER1_type 38 1074 -1788 229 198 91 83 chr6 22232699 22232820 -167046734 + Charlie2a DNA MER1_type 978 1099 -1763 * 1919 196 51 52 chr6 22232798 22233276 -167046278 + Charlie2a DNA MER1_type 2215 2693 -169 1627 157 39 18 chr6 22233276 22233562 -167045992 - AluJo SINE Alu -20 292 1 1919 196 51 52 chr6 22233562 22233732 -167045822 + Charlie2a DNA MER1_type 2693 2862 0 480 264 13 13 chr6 22233928 22234083 -167045471 - L1ME3A LINE L1 -289 5881 5727 1001 163 73 0 chr6 22234093 22234271 -167045283 - AluJo SINE Alu -1 311 121 999 275 76 18 chr6 22234271 22234664 -167044890 - L1ME3A LINE L1 -451 5711 5296 365 206 0 0 chr6 22234669 22234742 -167044812 - L1MA9 LINE L1 0 6312 6240 2606 176 13 74 chr6 22234762 22235314 -167044240 + MLT2B1 LTR ERVL 3 520 0 1742 183 0 26 chr6 22235327 22235638 -167043916 - AluJo SINE Alu -9 303 1 951 297 58 27 chr6 22235646 22236317 -167043237 - L1ME3A LINE L1 -1112 5034 4343 1836 166 3 16 chr6 22236324 22236637 -167042917 - AluJo SINE Alu -3 309 1 2328 69 10 16 chr6 22236899 22237204 -167042350 + AluY SINE Alu 2 304 -7 2378 87 3 0 chr6 22237259 22237557 -167041997 - AluSp SINE Alu -14 299 1 197 330 139 0 chr6 22237632 22237747 -167041807 - L2 LINE L2 -1 3271 3141 513 122 0 14 chr6 22237906 22238011 -167041543 + AluSg/x SINE Alu 210 313 0 413 353 66 25 chr6 22238011 22238328 -167041226 - L3 LINE CR1 -223 1354 1025 183 354 0 0 chr6 22238389 22238468 -167041086 + L3 LINE CR1 1303 1381 -196 1021 269 69 94 chr6 22238568 22239088 -167040466 - MLT1K LTR MaLR -15 573 67 263 289 74 47 chr6 22239210 22239359 -167040195 + MIR3 SINE MIR 54 206 -2 218 294 56 67 chr6 22239798 22239948 -167039606 + MIR SINE MIR 3 149 -65 232 351 37 0 chr6 22240019 22240153 -167039401 + L3 LINE CR1 626 764 -813 371 256 64 40 chr6 22240415 22240540 -167039014 + MER91B DNA MER1_type 1 128 -62 299 226 65 54 chr6 22240560 22240653 -167038901 + MER91B DNA MER1_type 95 188 -2 1466 159 29 108 chr6 22240721 22240893 -167038661 + AluJo SINE Alu 1 138 -174 658 29 48 0 chr6 22240893 22240998 -167038556 + (TA)n Simple_repeat Simple_repeat 2 111 0 1466 159 29 108 chr6 22240998 22241140 -167038414 + AluJo SINE Alu 138 290 -22 24 0 0 0 chr6 22241144 22241168 -167038386 + AT_rich Low_complexity Low_complexity 1 24 0 337 333 101 6 chr6 22241170 22241329 -167038225 + L3 LINE CR1 1368 1541 -36 242 286 137 30 chr6 22241343 22241511 -167038043 - MIR SINE MIR -10 252 67 405 123 0 15 chr6 22241529 22241594 -167037960 - MLT1D LTR MaLR -2 503 440 2134 108 0 0 chr6 22241598 22241875 -167037679 + AluSx SINE Alu 4 280 -32 183 42 0 0 chr6 22241878 22241902 -167037652 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7881 133 69 43 chr6 22241914 22243430 -167036124 + pTR5 LTR ERV1 741 2295 -143 1316 241 65 34 chr6 22243442 22243857 -167035697 - MLT1D LTR MaLR -76 429 2 2326 100 0 28 chr6 22244626 22244947 -167034607 + AluSx SINE Alu 1 312 0 289 215 0 131 chr6 22245099 22245229 -167034325 + MER5A DNA MER1_type 33 145 -44 430 261 0 9 chr6 22246292 22246403 -167033151 + MER5B DNA MER1_type 6 115 -63 448 278 35 0 chr6 22246405 22246574 -167032980 + L1MD2 LINE L1 4623 4797 -1349 3167 158 115 13 chr6 22246574 22247183 -167032371 + LTR51 LTR ERV1 1 671 0 1267 200 82 65 chr6 22247198 22247763 -167031791 - LTR1B LTR ERV1 0 1020 308 4045 134 67 62 chr6 22247766 22248971 -167030583 + pTR5 LTR ERV1 749 2295 -143 692 246 89 0 chr6 22249032 22249235 -167030319 - LTR1B LTR ERV1 -605 221 1 595 215 49 85 chr6 22249245 22249320 -167030234 + L1MD2 LINE L1 4792 4868 -1278 1227 96 21 11 chr6 22249320 22249507 -167030047 - L1MA5 LINE L1 -4 6296 6108 595 215 49 85 chr6 22249507 22249677 -167029877 + L1MD2 LINE L1 4868 5028 -1118 2256 109 3 10 chr6 22249704 22250008 -167029546 + AluSp SINE Alu 1 302 -11 563 108 0 65 chr6 22250082 22250217 -167029337 + AluSp/q SINE Alu 215 313 0 2805 233 45 33 chr6 22250250 22250429 -167029125 - MER21B LTR ERV1 -52 811 636 1520 197 139 47 chr6 22250429 22250896 -167028658 - LTR54 LTR ERV1 0 510 1 2805 233 45 33 chr6 22250896 22251421 -167028133 - MER21B LTR ERV1 -227 636 98 375 211 11 63 chr6 22251550 22251645 -167027909 - MER21B LTR ERV1 -773 90 1 1239 203 12 30 chr6 22251647 22251810 -167027744 + L1MD2 LINE L1 5074 5238 -1004 1624 168 0 38 chr6 22251810 22252101 -167027453 + AluJb SINE Alu 20 299 -13 1239 203 12 30 chr6 22252101 22252385 -167027169 + L1MD2 LINE L1 5238 5508 -734 775 179 85 113 chr6 22252385 22252681 -167026873 - LTR8A LTR ERV1 0 727 439 3511 156 34 128 chr6 22252681 22253588 -167025966 - LTR12 LTR ERV1 0 826 5 775 179 85 113 chr6 22253588 22253620 -167025934 - LTR8A LTR ERV1 -288 439 408 2779 169 17 27 chr6 22253620 22254213 -167025341 - pTR5 LTR ERV1 -1110 1328 742 454 223 121 40 chr6 22254221 22254453 -167025101 - LTR8A LTR ERV1 -266 461 84 793 254 66 31 chr6 22254521 22254777 -167024777 - LTR8 LTR ERV1 -425 266 2 659 233 98 123 chr6 22254804 22255374 -167024180 - MER34B LTR ERV1 -4 561 6 2562 191 17 101 chr6 22255381 22255954 -167023600 + L1MD2 LINE L1 5526 6029 -213 255 61 0 0 chr6 22255954 22255987 -167023567 + (CA)n Simple_repeat Simple_repeat 1 33 0 2562 191 17 101 chr6 22255987 22256125 -167023429 + L1MD2 LINE L1 6029 6177 -65 2310 47 29 4 chr6 22256125 22256399 -167023155 + AluY SINE Alu 15 295 -16 957 163 0 7 chr6 22256400 22256547 -167023007 + AluSg/x SINE Alu 134 279 -33 427 298 8 8 chr6 22256585 22256706 -167022848 + MER5B DNA MER1_type 50 170 -8 2281 117 0 0 chr6 22256802 22257110 -167022444 + AluSx SINE Alu 1 308 -4 2148 105 7 3 chr6 22257181 22257475 -167022079 + AluSq SINE Alu 1 295 -18 1400 206 110 39 chr6 22257694 22257864 -167021690 - Zaphod DNA AcHobo 0 4031 3875 2100 136 0 3 chr6 22257864 22258166 -167021388 - AluSx SINE Alu -11 301 1 1400 206 110 39 chr6 22258166 22258403 -167021151 - Zaphod DNA AcHobo -156 3875 3595 686 184 52 55 chr6 22258375 22258718 -167020836 - Zaphod DNA AcHobo -3020 1011 670 * 2014 192 44 3 chr6 22258718 22259104 -167020450 + Tigger7 DNA MER2_type 1 402 -2085 231 216 0 20 chr6 22259205 22259256 -167020298 - LTR28 LTR ERV1 -56 964 915 1810 199 129 58 chr6 22259265 22259839 -167019715 - LTR1B LTR ERV1 -211 615 1 509 154 13 0 chr6 22259867 22259945 -167019609 + Tigger7 DNA MER2_type 2409 2487 0 1602 257 120 46 chr6 22259945 22259999 -167019555 - Zaphod DNA AcHobo -3360 671 622 244 48 48 0 chr6 22259999 22260041 -167019513 + (TA)n Simple_repeat Simple_repeat 1 44 0 1602 257 120 46 chr6 22260041 22260596 -167018958 - Zaphod DNA AcHobo -3409 622 17 363 313 60 30 chr6 22260667 22260900 -167018654 + MARNA DNA Mariner 272 511 -75 2266 104 10 7 chr6 22261077 22261385 -167018169 - AluSx SINE Alu -3 309 1 1825 169 0 3 chr6 22261623 22261919 -167017635 + AluJo SINE Alu 1 295 -17 431 218 11 0 chr6 22262809 22262896 -167016658 - L1MC5 LINE L1 -1221 6740 6653 * 749 310 38 34 chr6 22262894 22263397 -167016157 - HAL1b LINE L1 -755 593 89 1250 311 9 12 chr6 22264077 22264411 -167015143 - HERV16 LTR ERVL -1963 3033 2701 22 56 0 0 chr6 22264426 22264462 -167015092 + AT_rich Low_complexity Low_complexity 1 36 0 2257 111 3 10 chr6 22264655 22264962 -167014592 - AluSx SINE Alu -5 307 3 2231 99 7 0 chr6 22265222 22265516 -167014038 + AluSx SINE Alu 1 296 -16 997 197 89 15 chr6 22266106 22266340 -167013214 + MLT2B1 LTR ERVL 222 520 0 1166 187 83 56 chr6 22266350 22266520 -167013034 - Charlie5 DNA MER1_type -2143 481 317 2260 112 10 0 chr6 22266520 22266823 -167012731 + AluSx SINE Alu 1 306 -6 1166 187 83 56 chr6 22266823 22266989 -167012565 - Charlie5 DNA MER1_type -2307 317 136 830 171 8 0 chr6 22266991 22267120 -167012434 + AluSq/x SINE Alu 2 131 -182 379 259 0 0 chr6 22267159 22267244 -167012310 - Charlie5 DNA MER1_type -2518 94 10 400 288 122 18 chr6 22267554 22267776 -167011778 + MIR SINE MIR 1 245 -17 2011 119 34 3 chr6 22267812 22268107 -167011447 + AluSx SINE Alu 4 307 -5 3691 124 208 82 chr6 22268267 22269638 -167009916 + pTR5 LTR ERV1 742 2438 0 6191 154 34 19 chr6 22271189 22271674 -167007880 + L1MA7 LINE L1 4157 4633 -1658 351 0 0 0 chr6 22271674 22271713 -167007841 + (CA)n Simple_repeat Simple_repeat 1 39 0 6191 154 34 19 chr6 22271713 22271752 -167007802 + L1MA7 LINE L1 4633 4670 -1621 1732 194 3 32 chr6 22271752 22272067 -167007487 + AluJo SINE Alu 1 306 -6 6191 154 34 19 chr6 22272067 22272362 -167007192 + L1MA7 LINE L1 4670 4959 -1332 760 169 39 15 chr6 22272362 22272492 -167007062 + FLAM_C SINE Alu 1 133 0 6191 154 34 19 chr6 22272492 22273779 -167005775 + L1MA7 LINE L1 4959 6291 0 786 218 0 0 chr6 22273920 22274053 -167005501 - FLAM_A SINE Alu 0 133 1 24 0 0 0 chr6 22274112 22274136 -167005418 + AT_rich Low_complexity Low_complexity 1 24 0 1537 149 22 99 chr6 22274170 22274492 -167005062 - AluJo SINE Alu -15 297 1 402 298 5 105 chr6 22274887 22275078 -167004476 + MIR3 SINE MIR 20 191 -17 2327 116 7 0 chr6 22275167 22275477 -167004077 - AluSx SINE Alu 0 312 1 1512 265 78 75 chr6 22276731 22277257 -167002297 + MER115 DNA AcHobo 19 549 -144 2342 106 0 3 chr6 22277257 22277568 -167001986 + AluSq SINE Alu 1 310 -3 1512 265 78 75 chr6 22277568 22277710 -167001844 + MER115 DNA AcHobo 549 689 -4 2346 89 0 0 chr6 22278889 22279181 -167000373 + AluSg SINE Alu 1 292 -18 1346 46 0 0 chr6 22280041 22280194 -166999360 - AluY SINE Alu -8 303 151 255 273 0 0 chr6 22280502 22280557 -166998997 - L2 LINE L2 -82 3190 3136 228 296 138 73 chr6 22280652 22280912 -166998642 - L2 LINE L2 -189 3083 2807 316 339 104 9 chr6 22280966 22281081 -166998473 + L2 LINE L2 3147 3272 0 4239 142 13 2 chr6 22281271 22281897 -166997657 - MER41B LTR ERV1 0 635 3 2423 94 0 0 chr6 22281904 22282213 -166997341 - AluSc SINE Alu 0 309 1 232 237 62 52 chr6 22282369 22282466 -166997088 + MER103 DNA DNA 43 140 -26 2163 125 3 3 chr6 22282466 22282778 -166996776 + AluSx SINE Alu 1 312 0 496 304 90 83 chr6 22283020 22283477 -166996077 + L2 LINE L2 2811 3270 -2 2486 66 0 10 chr6 22283529 22283831 -166995723 + AluY SINE Alu 1 299 -12 208 239 22 0 chr6 22284487 22284533 -166995021 + L2 LINE L2 3218 3264 -8 4891 106 0 2 chr6 22284588 22285232 -166994322 - L1PA13 LINE L1 -4 6159 5517 441 313 114 11 chr6 22285781 22285957 -166993597 - MIR SINE MIR -32 230 37 2108 123 3 0 chr6 22285987 22286280 -166993274 - AluSx SINE Alu -18 294 1 359 270 76 133 chr6 22286461 22286850 -166992704 + MLT1K LTR MaLR 149 510 -78 2178 84 28 3 chr6 22286850 22287137 -166992417 - AluSg1 SINE Alu -15 294 1 359 270 76 133 chr6 22287137 22287207 -166992347 + MLT1K LTR MaLR 510 582 -6 633 121 0 10 chr6 22287470 22287569 -166991985 + MER4A LTR ERV1 1 98 -566 1913 128 9 25 chr6 22287569 22287920 -166991634 + MER4A LTR ERV1 261 664 0 833 204 0 0 chr6 22288870 22289043 -166990511 - FLAM_A SINE Alu 0 173 1 1153 261 59 36 chr6 22289165 22289609 -166989945 - L2 LINE L2 0 3313 2860 1714 257 40 71 chr6 22289609 22290445 -166989109 + L1MEd LINE L1 304 1113 -5006 1445 256 15 15 chr6 22290434 22290894 -166988660 + L1MEd LINE L1 3018 3477 -2652 * 517 111 0 0 chr6 22290907 22290979 -166988575 + U3 snRNA snRNA 1 72 -145 11231 180 17 14 chr6 22290980 22294094 -166985460 + L1PA16 LINE L1 3041 6160 -6 7602 197 37 26 chr6 22294074 22296379 -166983175 + L1MB8 LINE L1 3452 5791 -376 * 1848 160 0 39 chr6 22296379 22296506 -166983048 + AluJo SINE Alu 1 131 -181 2494 62 0 10 chr6 22296506 22296810 -166982744 - AluSp SINE Alu -12 301 1 1848 160 0 39 chr6 22296810 22296994 -166982560 + AluJo SINE Alu 131 300 -12 7602 197 37 26 chr6 22296994 22297200 -166982354 + L1MB8 LINE L1 5791 5993 -174 1816 195 84 7 chr6 22297202 22297429 -166982125 - MLT1C LTR MaLR -3 464 256 2327 122 0 0 chr6 22297429 22297740 -166981814 - AluSp SINE Alu -2 311 1 1816 195 84 7 chr6 22297740 22297938 -166981616 - MLT1C LTR MaLR -211 256 6 990 141 12 12 chr6 22297943 22298113 -166981441 + L1MB8 LINE L1 5990 6159 -2 1649 140 41 51 chr6 22298788 22299080 -166980474 - AluJb SINE Alu -23 289 1 246 270 43 17 chr6 22299085 22299200 -166980354 + L1MEc LINE L1 2256 2373 -4023 1168 188 134 3 chr6 22299222 22299514 -166980040 - MER46C DNA MER2_type -8 330 1 243 311 71 36 chr6 22299515 22299711 -166979843 + L1MEc LINE L1 2366 2568 -3647 317 253 72 24 chr6 22299965 22300048 -166979506 - MIR SINE MIR -148 114 28 766 216 50 66 chr6 22301390 22301573 -166977981 + MIR SINE MIR 21 201 -61 3521 146 9 13 chr6 22301573 22302102 -166977452 - MER1A DNA MER1_type 0 527 1 766 216 50 66 chr6 22302102 22302159 -166977395 + MIR SINE MIR 201 257 -5 934 279 36 69 chr6 22302165 22302515 -166977039 - L2 LINE L2 -1 3312 2979 2331 88 7 0 chr6 22302515 22302812 -166976742 - AluSp SINE Alu -14 299 1 934 279 36 69 chr6 22302812 22302927 -166976627 - L2 LINE L2 -334 2979 2862 2809 207 36 52 chr6 22303757 22304443 -166975111 - L1ME1 LINE L1 -18 6148 5474 26 64 0 0 chr6 22304485 22304532 -166975022 + AT_rich Low_complexity Low_complexity 1 47 0 280 209 22 11 chr6 22304543 22304634 -166974920 - Charlie5 DNA MER1_type -84 2528 2437 7513 145 19 35 chr6 22304634 22306151 -166973403 - L1MA4 LINE L1 -10 6290 4824 2158 122 0 10 chr6 22306151 22306454 -166973100 - AluSq SINE Alu -3 310 11 7513 145 19 35 chr6 22306454 22307344 -166972210 - L1MA4 LINE L1 -1476 4824 3921 885 167 48 0 chr6 22307343 22307580 -166971974 - L1ME1 LINE L1 -745 5401 5192 * 1139 204 232 20 chr6 22307576 22307929 -166971625 - L1ME1 LINE L1 -19 6147 5720 37 0 0 21 chr6 22308251 22308268 -166971286 + AT_rich Low_complexity Low_complexity 1 17 -30 2470 49 0 0 chr6 22308268 22308556 -166970998 + AluY SINE Alu 1 288 -23 37 0 0 21 chr6 22308556 22308586 -166970968 + AT_rich Low_complexity Low_complexity 17 47 0 1954 86 0 32 chr6 22308899 22309178 -166970376 + AluY SINE Alu 37 306 -5 2025 106 7 46 chr6 22309189 22309492 -166970062 + AluSx SINE Alu 2 292 -20 340 271 15 68 chr6 22309643 22309776 -166969778 + MER5A DNA MER1_type 7 132 -57 6217 131 153 81 chr6 22309954 22311407 -166968147 + pTR5 LTR ERV1 738 2295 -143 1639 148 7 21 chr6 22313099 22313383 -166966171 + L1MB7 LINE L1 5905 6184 0 828 288 93 27 chr6 22313390 22313898 -166965656 + L1ME LINE L1 5267 5817 -345 1720 164 7 33 chr6 22314385 22314690 -166964864 - AluJo SINE Alu -15 297 1 987 219 9 19 chr6 22314739 22314949 -166964605 + MER3 DNA MER1_type 2 209 0 2224 106 26 7 chr6 22315066 22315369 -166964185 - AluSx SINE Alu -3 309 1 201 340 57 0 chr6 22315751 22315868 -166963686 - L2 LINE L2 -464 2850 2724 2941 163 42 11 chr6 22315906 22316132 -166963422 + L1MB3 LINE L1 5609 5827 -356 1990 103 88 0 chr6 22316132 22316404 -166963150 + AluSp SINE Alu 1 296 -17 2941 163 42 11 chr6 22316404 22316731 -166962823 + L1MB3 LINE L1 5827 6179 -4 1210 273 147 10 chr6 22316745 22316771 -166962783 + L2 LINE L2 2565 2586 -727 2465 89 0 6 chr6 22316771 22317085 -166962469 - AluSq SINE Alu -1 312 1 1210 273 147 10 chr6 22317085 22317507 -166962047 + L2 LINE L2 2586 2949 -364 823 19 19 28 chr6 22317507 22317635 -166961919 + L1PA3 LINE L1 6048 6155 0 1210 273 147 10 chr6 22317635 22317837 -166961717 + L2 LINE L2 2949 3313 0 462 232 151 27 chr6 22318005 22318190 -166961364 - L2 LINE L2 -887 2427 2220 44 46 0 0 chr6 22318406 22318471 -166961083 + AT_rich Low_complexity Low_complexity 1 65 0 244 254 0 0 chr6 22318595 22318658 -166960896 - MIR3 SINE MIR -41 167 105 2147 117 3 47 chr6 22318773 22318994 -166960560 + L1PB4 LINE L1 5585 5785 -371 297 0 0 0 chr6 22318994 22319027 -166960527 + (CA)n Simple_repeat Simple_repeat 1 33 0 2147 117 3 47 chr6 22319027 22319165 -166960389 + L1PB4 LINE L1 5785 5928 -228 * 2242 110 27 9 chr6 22319152 22319489 -166960065 + L1PA16 LINE L1 5686 6028 -138 24 67 0 0 chr6 22319497 22319542 -166960012 + AT_rich Low_complexity Low_complexity 1 45 0 429 158 89 0 chr6 22319550 22319651 -166959903 + L1MDa LINE L1 1631 1740 -4800 1397 165 28 0 chr6 22319728 22319976 -166959578 + L1PB4 LINE L1 5892 6146 -10 273 307 156 34 chr6 22320554 22320733 -166958821 + MLT1J LTR MaLR 115 315 -196 274 218 126 0 chr6 22320785 22320872 -166958682 + MLT1L LTR MaLR 501 598 -17 1671 155 15 0 chr6 22321051 22321315 -166958239 - AluJb SINE Alu -44 268 1 920 193 19 0 chr6 22324443 22324604 -166954950 + FAM SINE Alu 1 164 -11 389 276 52 22 chr6 22324642 22324776 -166954778 + MIR SINE MIR 12 149 -113 2068 93 90 0 chr6 22324781 22325060 -166954494 - AluSg SINE Alu -6 304 1 275 260 144 0 chr6 22325109 22325213 -166954341 + MIR SINE MIR 4 122 -140 742 218 0 0 chr6 22325299 22325423 -166954131 - FLAM_A SINE Alu -9 124 1 1268 197 0 0 chr6 22325428 22325636 -166953918 - MER58A DNA MER1_type -16 208 1 210 158 0 0 chr6 22325870 22325908 -166953646 + A-rich Low_complexity Low_complexity 1 38 0 462 246 36 98 chr6 22326431 22326655 -166952899 + MLT1J LTR MaLR 299 508 -3 808 266 112 16 chr6 22326665 22326707 -166952847 - HsTC2c DNA Tc2 -1170 728 691 1792 52 4 0 chr6 22326707 22326937 -166952617 - L1PA4 LINE L1 -3 6152 5922 808 266 112 16 chr6 22326937 22327206 -166952348 - HsTC2c DNA Tc2 -1207 691 387 340 231 0 15 chr6 22327218 22327283 -166952271 + MER91A DNA MER1_type 28 91 -105 4406 158 72 39 chr6 22327600 22328911 -166950643 + pTR5 LTR ERV1 734 2438 0 5405 171 239 33 chr6 22328921 22330327 -166949227 + pTR5 LTR ERV1 743 2438 0 1824 161 3 7 chr6 22330456 22330754 -166948800 + AluSx SINE Alu 1 297 -15 1648 125 4 36 chr6 22331386 22331634 -166947920 + AluSc SINE Alu 46 285 -24 1381 169 103 63 chr6 22331697 22332064 -166947490 + MLT1B LTR MaLR 1 382 -8 2158 102 7 3 chr6 22332811 22333138 -166946416 - AluSx SINE Alu 0 328 1 2137 125 0 13 chr6 22333407 22333711 -166945843 + AluSx SINE Alu 1 300 -12 298 316 0 11 chr6 22334191 22334286 -166945268 + GA-rich Low_complexity Low_complexity 3 96 0 344 248 92 46 chr6 22334319 22334557 -166944997 + L1M4 LINE L1 3791 4039 -2107 692 199 0 8 chr6 22334581 22334712 -166944842 + FLAM_C SINE Alu 2 131 -12 1506 170 25 28 chr6 22334719 22335001 -166944553 + AluJo SINE Alu 1 281 -31 1197 263 28 12 chr6 22335150 22335473 -166944081 + MER93a LTR ERV1 75 402 0 1799 171 3 0 chr6 22335682 22335975 -166943579 + AluJo SINE Alu 7 300 -12 2347 110 0 10 chr6 22336901 22337211 -166942343 - AluSx SINE Alu -5 307 1 401 218 40 30 chr6 22337968 22338069 -166941485 - MER5A DNA MER1_type -84 105 4 345 223 58 10 chr6 22338370 22338473 -166941081 + Charlie8 DNA MER1_type 1 108 -2309 327 351 0 30 chr6 22338474 22338605 -166940949 - MER5B DNA MER1_type 0 178 52 2344 169 14 0 chr6 22338606 22339025 -166940529 - L1MC3 LINE L1 0 7785 7361 246 261 0 15 chr6 22339026 22339091 -166940463 - MER5B DNA MER1_type -114 64 1 695 148 0 9 chr6 22339115 22339223 -166940331 + AluJ SINE Alu 24 130 -182 181 288 38 38 chr6 22339437 22339517 -166940037 + L2 LINE L2 3193 3272 0 727 164 8 8 chr6 22339599 22339721 -166939833 + AluJ SINE Alu 2 123 -189 855 229 0 7 chr6 22339774 22339952 -166939602 + AluJ SINE Alu 132 308 0 234 135 0 0 chr6 22340029 22340066 -166939488 + MLT1J LTR MaLR 99 135 -376 436 66 33 0 chr6 22340084 22340145 -166939409 + MADE1 DNA Mariner 2 64 -16 442 289 106 29 chr6 22340668 22340876 -166938678 + MLT1J LTR MaLR 241 464 -47 830 128 0 16 chr6 22340976 22341101 -166938453 - FLAM_A SINE Alu -10 123 1 504 186 39 0 chr6 22341417 22341519 -166938035 - L2 LINE L2 -22 3291 3186 285 317 106 0 chr6 22341959 22342082 -166937472 - MIR SINE MIR -31 231 96 1358 94 0 6 chr6 22342209 22342389 -166937165 - AluSg/x SINE Alu -7 303 125 984 269 100 59 chr6 22343065 22343593 -166935961 - MLT1K LTR MaLR -8 580 31 218 325 78 0 chr6 22344956 22345065 -166934489 - MIR SINE MIR -65 143 28 429 281 141 5 chr6 22345868 22346053 -166933501 + MIR SINE MIR 4 213 -49 1852 137 7 25 chr6 22347559 22347844 -166931710 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr6 22347849 22347875 -166931679 + (CA)n Simple_repeat Simple_repeat 1 26 0 2469 28 42 0 chr6 22348232 22348520 -166931034 + AluY SINE Alu 1 300 -11 272 294 56 32 chr6 22348521 22348647 -166930907 - MER94 DNA DNA -4 130 2 259 19 0 111 chr6 22349888 22349942 -166929612 + (TA)n Simple_repeat Simple_repeat 1 48 0 408 88 0 0 chr6 22349942 22349999 -166929555 + (TG)n Simple_repeat Simple_repeat 2 58 0 607 306 23 9 chr6 22350458 22350674 -166928880 + MIR SINE MIR 30 248 -14 2186 107 3 0 chr6 22351131 22351430 -166928124 - AluY SINE Alu -11 300 1 695 176 16 0 chr6 22352027 22352152 -166927402 - FLAM_A SINE Alu -2 131 5 421 189 242 0 chr6 22352177 22352272 -166927282 + MER33 DNA MER1_type 1 118 -206 894 191 27 16 chr6 22352273 22352461 -166927093 + AluJo SINE Alu 117 306 -6 706 138 78 6 chr6 22352474 22352641 -166926913 + MER33 DNA MER1_type 127 305 -19 884 199 18 6 chr6 22353362 22353574 -166925980 - AluSg/x SINE Alu 0 347 134 1476 254 72 19 chr6 22353575 22354208 -166925346 + L2 LINE L2 2622 3312 -1 387 298 90 53 chr6 22354243 22354533 -166925021 - L2 LINE L2 -125 3188 2873 2218 97 3 7 chr6 22354533 22354832 -166924722 + AluSq SINE Alu 1 298 -15 387 298 90 53 chr6 22354832 22354944 -166924610 - L2 LINE L2 -440 2873 2767 1648 235 47 28 chr6 22355465 22355649 -166923905 + MLT1D LTR MaLR 1 180 -325 2417 83 0 49 chr6 22355649 22355975 -166923579 + AluSp SINE Alu 1 310 -3 1648 235 47 28 chr6 22355975 22356283 -166923271 + MLT1D LTR MaLR 180 502 -3 1994 156 21 9 chr6 22356370 22356710 -166922844 - MER2 DNA MER2_type 0 344 1 301 98 0 0 chr6 22356807 22356848 -166922706 - MER2 DNA MER2_type -303 42 2 2295 101 0 23 chr6 22357613 22357921 -166921633 + AluSx SINE Alu 1 301 -11 223 271 0 57 chr6 22357937 22358007 -166921547 + L2 LINE L2 3199 3264 -8 241 293 13 0 chr6 22358021 22358096 -166921458 - L2 LINE L2 -1041 2273 2198 180 309 0 36 chr6 22358822 22358906 -166920648 - L2 LINE L2 -3 3269 3189 23 0 0 0 chr6 22359621 22359644 -166919910 + AT_rich Low_complexity Low_complexity 1 23 0 1789 176 3 3 chr6 22359644 22359934 -166919620 - AluJo SINE Alu -22 290 1 2196 115 0 0 chr6 22359958 22360245 -166919309 + AluSx SINE Alu 1 287 -25 213 196 0 0 chr6 22360398 22360449 -166919105 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 214 307 89 50 chr6 22360990 22361091 -166918463 - L2 LINE L2 0 3272 3168 451 225 0 0 chr6 22361445 22361525 -166918029 + MLT1G1 LTR MaLR 8 87 -508 526 196 4 6 chr6 22361529 22361774 -166917780 + AluJb SINE Alu 1 300 -2 838 220 12 0 chr6 22361812 22361980 -166917574 + AluSg/x SINE Alu 137 306 -6 1683 233 103 19 chr6 22362018 22362482 -166917072 + MLT1G3 LTR MaLR 28 530 0 951 215 17 0 chr6 22363083 22363255 -166916299 + MER45A DNA AcHobo 1 175 -3 1886 162 0 13 chr6 22363310 22363624 -166915930 + AluJb SINE Alu 1 310 -2 477 139 0 25 chr6 22363834 22363913 -166915641 + Tigger2 DNA MER2_type 1 77 -2641 * 2812 118 18 29 chr6 22363894 22364345 -166915209 + Tigger2 DNA MER2_type 2273 2718 0 2291 98 3 22 chr6 22364390 22364707 -166914847 - AluY SINE Alu 0 311 1 2207 143 95 23 chr6 22365167 22365566 -166913988 + MSTA LTR MaLR 1 428 0 2262 85 3 0 chr6 22366390 22366672 -166912882 - AluSx SINE Alu -29 283 1 787 145 40 20 chr6 22366672 22366824 -166912730 - L1MC1 LINE L1 -3 6330 6176 3626 139 15 11 chr6 22366681 22367292 -166912262 - L1MC1 LINE L1 -15 6318 5706 22 56 0 0 chr6 22367300 22367336 -166912218 + AT_rich Low_complexity Low_complexity 1 36 0 2165 91 7 3 chr6 22367855 22368153 -166911401 - AluSp SINE Alu -14 299 1 1884 114 61 0 chr6 22368181 22368461 -166911093 + AluSg SINE Alu 1 297 -13 306 284 88 25 chr6 22368480 22368684 -166910870 - L1ME LINE L1 -282 5839 5623 661 273 110 9 chr6 22368799 22369075 -166910479 - MLT1J LTR MaLR -146 304 40 292 249 76 27 chr6 22369088 22369273 -166910281 - L1ME LINE L1 -513 5608 5384 957 261 95 46 chr6 22369743 22370133 -166909421 - MLT1I LTR MaLR 0 409 1 245 400 61 0 chr6 22370242 22370357 -166909197 + L2 LINE L2 3144 3265 -7 1960 123 3 3 chr6 22370411 22370696 -166908858 + AluSq SINE Alu 1 285 -28 904 246 128 35 chr6 22371284 22371650 -166907904 - MLT1I LTR MaLR -2 407 8 2228 75 24 0 chr6 22372448 22372740 -166906814 - AluSq SINE Alu -14 299 1 475 291 106 13 chr6 22372894 22373131 -166906423 - L1ME4a LINE L1 -258 5863 5605 1452 248 111 12 chr6 22373131 22373636 -166905918 + MLT1G LTR MaLR 1 590 0 374 288 17 8 chr6 22373636 22373754 -166905800 - L1ME4a LINE L1 -512 5609 5491 251 179 71 24 chr6 22373792 22373876 -166905678 - L1MC5 LINE L1 -37 7924 7837 886 223 22 5 chr6 22373974 22374158 -166905396 - AluJo SINE Alu -5 307 121 603 307 11 38 chr6 22374277 22374541 -166905013 - MIR SINE MIR -1 261 5 1789 125 0 48 chr6 22375684 22375996 -166903558 + AluJo SINE Alu 1 297 -15 465 211 79 0 chr6 22376227 22376341 -166903213 - MIR SINE MIR -18 244 122 2045 123 10 3 chr6 22377398 22377700 -166901854 - AluSx SINE Alu -8 304 1 423 0 0 0 chr6 22377806 22377853 -166901701 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2168 104 0 0 chr6 22378330 22378629 -166900925 + AluSq SINE Alu 1 299 -14 327 327 136 45 chr6 22378691 22378809 -166900745 + L2 LINE L2 2153 2259 -1055 252 0 0 0 chr6 22378809 22378837 -166900717 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 351 0 0 0 chr6 22378836 22378875 -166900679 + (TG)n Simple_repeat Simple_repeat 2 40 0 327 327 136 45 chr6 22378837 22379291 -166900263 + L2 LINE L2 2259 2736 -578 317 294 42 8 chr6 22379328 22379447 -166900107 + LTR33 LTR ERVL 3 125 -396 282 186 17 17 chr6 22379687 22379746 -166899808 + LTR33 LTR ERVL 456 514 -7 357 278 93 0 chr6 22379747 22379844 -166899710 + L2 LINE L2 3167 3272 0 1601 173 0 35 chr6 22379985 22380119 -166899435 + AluJo SINE Alu 9 146 -166 2105 101 0 19 chr6 22380119 22380426 -166899128 + AluSx SINE Alu 1 301 -11 1601 173 0 35 chr6 22380426 22380580 -166898974 + AluJo SINE Alu 146 287 -25 487 331 35 7 chr6 22380834 22380979 -166898575 - L2 LINE L2 -8 3264 3116 2645 134 71 5 chr6 22381141 22381565 -166897989 - LTR47A LTR ERVL 0 452 1 787 171 47 12 chr6 22381762 22381932 -166897622 + AluJo SINE Alu 121 296 -16 221 262 49 0 chr6 22382943 22383004 -166896550 + L2 LINE L2 3250 3313 0 302 264 73 9 chr6 22383012 22383122 -166896432 - L1MC/D LINE L1 -1950 5858 5742 254 179 15 15 chr6 22383182 22383254 -166896300 - L1MC/D LINE L1 -526 5595 5525 2024 64 40 47 chr6 22383968 22384264 -166895290 - AluY SINE Alu -17 294 1 326 239 9 80 chr6 22384857 22384970 -166894584 + MLT1K LTR MaLR 180 284 -304 1545 179 21 3 chr6 22385211 22385501 -166894053 + AluJb SINE Alu 1 295 -17 1882 129 0 3 chr6 22385501 22385787 -166893767 + AluSq SINE Alu 21 305 -8 275 304 7 93 chr6 22387446 22387543 -166892011 + MIR SINE MIR 56 136 -118 2072 122 3 0 chr6 22387543 22387854 -166891700 + AluSx SINE Alu 1 312 0 275 304 7 93 chr6 22387854 22387906 -166891648 + MIR SINE MIR 136 191 -63 181 263 0 35 chr6 22388164 22388221 -166891333 - L2 LINE L2 -70 3202 3148 244 369 0 27 chr6 22388241 22388352 -166891202 + MER5B DNA MER1_type 3 110 -68 295 234 202 0 chr6 22388571 22388665 -166890889 - L2 LINE L2 0 3313 3201 2027 101 7 13 chr6 22389324 22389631 -166889923 + AluSx SINE Alu 1 305 -7 246 241 18 116 chr6 22389923 22390035 -166889519 + 7SK RNA RNA 34 134 -59 1250 182 103 114 chr6 22390151 22390696 -166888858 - LTR8A LTR ERV1 -2 725 187 2326 69 3 10 chr6 22390747 22391050 -166888504 - AluY SINE Alu -10 301 1 292 196 76 65 chr6 22391071 22391163 -166888391 - LTR8 LTR ERV1 -598 93 1 2040 134 0 7 chr6 22391756 22392062 -166887492 - AluSx SINE Alu -8 304 1 1703 157 70 107 chr6 22392275 22392760 -166886794 - MLT1C LTR MaLR 0 467 1 2045 118 0 3 chr6 22392946 22393242 -166886312 + AluSg SINE Alu 1 295 -15 385 132 13 13 chr6 22393242 22393318 -166886236 + GA-rich Low_complexity Low_complexity 1 76 0 272 224 0 30 chr6 22393319 22393386 -166886168 + MIR SINE MIR 63 127 -81 2066 134 0 0 chr6 22393520 22393819 -166885735 - AluSq SINE Alu -14 299 1 2030 141 0 3 chr6 22394100 22394413 -166885141 - AluJb SINE Alu 0 312 1 629 299 90 43 chr6 22394645 22394990 -166884564 + LTR16C LTR ERVL 99 459 -32 651 301 125 24 chr6 22395051 22395386 -166884168 - MLT1K LTR MaLR -11 577 209 195 129 0 0 chr6 22395402 22395433 -166884121 + (TATG)n Simple_repeat Simple_repeat 2 32 0 454 153 0 38 chr6 22395767 22395898 -166883656 + (CA)n Simple_repeat Simple_repeat 2 127 0 223 265 0 0 chr6 22395928 22395977 -166883577 - L2 LINE L2 -1 3271 3223 2082 113 13 3 chr6 22396011 22396320 -166883234 + AluSx SINE Alu 1 312 0 1421 210 26 46 chr6 22396488 22396836 -166882718 - MER58B DNA MER1_type 0 341 1 1944 98 56 7 chr6 22396916 22397201 -166882353 - AluSg SINE Alu -11 299 1 410 320 57 39 chr6 22397398 22397679 -166881875 + L2 LINE L2 3028 3313 0 236 324 174 37 chr6 22397791 22398032 -166881522 - L2 LINE L2 -349 2965 2692 206 292 22 45 chr6 22398222 22398311 -166881243 - L2 LINE L2 -1018 2296 2210 930 179 29 43 chr6 22398311 22398518 -166881036 - MER3 DNA MER1_type -4 205 2 1250 144 40 36 chr6 22398566 22398816 -166880738 + L1MB4 LINE L1 5586 5836 -344 15519 125 17 21 chr6 22398816 22399367 -166880187 - Tigger1 DNA MER2_type 0 2418 1866 1649 57 40 31 chr6 22399367 22399595 -166879959 + MER30 DNA MER1_type 1 230 0 15519 125 17 21 chr6 22399595 22399741 -166879813 - Tigger1 DNA MER2_type -552 1866 1721 1379 210 0 22 chr6 22399741 22400060 -166879494 - AluJo SINE Alu 0 312 1 15519 125 17 21 chr6 22400060 22400183 -166879371 - Tigger1 DNA MER2_type -697 1721 1599 2320 72 7 0 chr6 22400183 22400490 -166879064 - AluY SINE Alu -2 309 1 15519 125 17 21 chr6 22400490 22402096 -166877458 - Tigger1 DNA MER2_type -819 1599 1 1727 164 42 12 chr6 22402097 22402432 -166877122 + L1MB4 LINE L1 5836 6180 0 764 153 8 16 chr6 22402934 22403058 -166876496 + FLAM_C SINE Alu 1 123 -10 2123 92 0 11 chr6 22403064 22403385 -166876169 + AluSc SINE Alu 1 318 0 2255 83 0 0 chr6 22403390 22403678 -166875876 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr6 22403685 22403710 -166875844 + AT_rich Low_complexity Low_complexity 1 25 0 2135 88 14 3 chr6 22404413 22404709 -166874845 + AluSx SINE Alu 2 300 -12 401 292 41 41 chr6 22404709 22404904 -166874650 + L1ME3A LINE L1 5967 6161 -9 265 276 92 10 chr6 22405174 22405272 -166874282 + MER5A DNA MER1_type 1 106 -83 221 143 0 20 chr6 22405889 22405938 -166873616 + (TA)n Simple_repeat Simple_repeat 1 48 0 511 296 45 17 chr6 22406141 22406317 -166873237 - MER5A DNA MER1_type -3 186 6 1593 154 7 37 chr6 22406409 22406707 -166872847 + AluJb SINE Alu 1 289 -23 1454 232 126 30 chr6 22406762 22407223 -166872331 - MLT1D LTR MaLR 0 505 1 273 289 117 23 chr6 22407620 22407748 -166871806 - MIR SINE MIR -3 259 120 2238 100 3 0 chr6 22407749 22408049 -166871505 - AluSx SINE Alu -11 301 1 978 103 0 0 chr6 22408049 22408185 -166871369 - AluSq/x SINE Alu -176 136 1 352 248 5 17 chr6 22408185 22408270 -166871284 - MIR SINE MIR -121 87 3 2140 109 0 0 chr6 22408868 22409161 -166870393 + AluSq SINE Alu 1 293 -20 25 0 0 0 chr6 22410382 22410407 -166869147 + GC_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr6 22411229 22411257 -166868297 + (CCG)n Simple_repeat Simple_repeat 2 29 0 213 39 0 0 chr6 22411459 22411485 -166868069 + (CGG)n Simple_repeat Simple_repeat 3 28 0 213 217 0 65 chr6 22412220 22412312 -166867242 + (CCCCG)n Simple_repeat Simple_repeat 4 89 0 308 299 5 5 chr6 22412522 22412659 -166866895 + C-rich Low_complexity Low_complexity 1 137 0 1317 61 6 0 chr6 22414210 22414375 -166865179 - AluSg/x SINE Alu -10 302 137 2221 77 0 0 chr6 22414408 22414693 -166864861 + AluSc SINE Alu 1 285 -24 653 268 26 16 chr6 22415088 22415282 -166864272 + MIR SINE MIR 66 261 -1 21 36 0 0 chr6 22417385 22417413 -166862141 + AT_rich Low_complexity Low_complexity 1 28 0 523 274 17 29 chr6 22417790 22417965 -166861589 - MIR3 SINE MIR -3 205 33 898 198 41 0 chr6 22419204 22419401 -166860153 + MIR SINE MIR 33 237 -25 2073 130 0 10 chr6 22419479 22419787 -166859767 - AluSx SINE Alu -7 305 1 215 288 56 64 chr6 22420839 22420964 -166858590 - L2 LINE L2 -17 3296 3173 496 178 147 80 chr6 22421110 22421273 -166858281 + MER5B DNA MER1_type 5 178 0 446 293 122 37 chr6 22421455 22421749 -166857805 - MER102b DNA MER1_type -22 319 1 716 281 54 9 chr6 22421760 22421984 -166857570 - MIR SINE MIR 0 262 29 192 282 127 14 chr6 22422072 22422143 -166857411 - MER5A DNA MER1_type 0 189 111 * 241 257 43 14 chr6 22422094 22422164 -166857390 + MER5A DNA MER1_type 43 114 -75 209 282 218 0 chr6 22423736 22423846 -166855708 + MIR SINE MIR 64 197 -65 822 163 62 12 chr6 22424289 22424449 -166855105 - MER20 DNA MER1_type -51 168 1 22 56 0 0 chr6 22424510 22424546 -166855008 + AT_rich Low_complexity Low_complexity 1 36 0 539 277 88 3 chr6 22424829 22425010 -166854544 + MIR SINE MIR 50 242 -20 496 292 8 15 chr6 22425189 22425319 -166854235 - L2 LINE L2 -3 3310 3182 638 208 67 67 chr6 22425381 22425559 -166853995 + MER5A DNA MER1_type 2 179 -10 24 67 0 0 chr6 22426373 22426418 -166853136 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr6 22427746 22427777 -166851777 + AT_rich Low_complexity Low_complexity 1 31 0 834 285 66 45 chr6 22427833 22428363 -166851191 - L1ME4a LINE L1 -104 6017 5477 1874 133 3 11 chr6 22428395 22428731 -166850823 - AluSx SINE Alu 0 334 1 1295 169 0 0 chr6 22428733 22428946 -166850608 - AluJb SINE Alu -14 298 86 548 287 27 5 chr6 22429016 22429204 -166850350 - MIR SINE MIR -2 260 69 234 0 0 0 chr6 22429304 22429330 -166850224 + (TG)n Simple_repeat Simple_repeat 2 27 0 14803 135 25 12 chr6 22429340 22430552 -166849002 - Tigger1 DNA MER2_type 0 2418 1223 1706 55 0 0 chr6 22430552 22430753 -166848801 - 7SLRNA srpRNA srpRNA -119 201 1 14803 135 25 12 chr6 22430753 22431902 -166847652 - Tigger1 DNA MER2_type -1195 1223 27 1916 165 58 3 chr6 22431998 22432325 -166847229 - MER7A DNA MER2_type -2 344 2 2296 86 0 3 chr6 22432344 22432634 -166846920 - AluSg SINE Alu -21 289 1 2381 76 0 3 chr6 22432644 22432935 -166846619 - AluSq SINE Alu -23 290 1 360 0 0 0 chr6 22433076 22433116 -166846438 + (TG)n Simple_repeat Simple_repeat 2 41 0 254 196 0 0 chr6 22433245 22433296 -166846258 + MER4-int LTR ERV1 1112 1162 -5436 305 267 35 69 chr6 22433316 22433518 -166846036 - L1ME4a LINE L1 -1306 4840 4646 491 264 88 26 chr6 22433611 22433804 -166845750 - MIR SINE MIR -49 213 9 2345 84 0 29 chr6 22434253 22434563 -166844991 - AluSx SINE Alu -11 301 1 302 213 160 21 chr6 22436349 22436443 -166843111 + MIR3 SINE MIR 93 199 -9 215 229 215 97 chr6 22436989 22437079 -166842475 + MIR SINE MIR 14 92 -170 2334 113 3 0 chr6 22437079 22437388 -166842166 - AluSx SINE Alu -2 310 1 215 229 215 97 chr6 22437388 22437441 -166842113 + MIR SINE MIR 92 174 -88 1448 168 0 5 chr6 22437817 22438037 -166841517 + MER20 DNA MER1_type 1 219 0 941 166 155 10 chr6 22438127 22438320 -166841234 + Tigger7 DNA MER2_type 9 229 -476 620 154 19 0 chr6 22438336 22438440 -166841114 + Tigger7 DNA MER2_type 2382 2487 0 33 0 0 0 chr6 22438748 22438781 -166840773 + AT_rich Low_complexity Low_complexity 1 33 0 1001 153 21 26 chr6 22439000 22439190 -166840364 - MER53 DNA DNA 0 189 1 1783 139 0 0 chr6 22439652 22439910 -166839644 + AluSx SINE Alu 45 302 -10 386 227 72 0 chr6 22440560 22440657 -166838897 + LTR16C LTR ERVL 388 491 0 1549 175 118 3 chr6 22440665 22440996 -166838558 - MLT1B LTR MaLR -3 387 19 180 302 19 0 chr6 22441453 22441506 -166838048 + MIR3 SINE MIR 146 199 -9 467 265 141 14 chr6 22441707 22441993 -166837561 + L2 LINE L2 2909 3312 -1 1986 160 19 43 chr6 22442288 22442706 -166836848 + Charlie4a DNA MER1_type 85 492 -16 609 141 33 0 chr6 22444050 22444142 -166835412 - AluJ/FLAM SINE Alu -216 96 2 2453 81 0 0 chr6 22444336 22444634 -166834920 + AluSc SINE Alu 1 298 -11 2401 108 0 0 chr6 22444840 22445146 -166834408 - AluSx SINE Alu -6 306 1 1446 149 27 0 chr6 22445217 22445318 -166834236 + MER30 DNA MER1_type 3 100 -130 243 0 0 0 chr6 22445318 22445345 -166834209 + (CA)n Simple_repeat Simple_repeat 2 28 0 1446 149 27 0 chr6 22445345 22445465 -166834089 + MER30 DNA MER1_type 100 230 0 1626 175 3 37 chr6 22445703 22446000 -166833554 + AluJo SINE Alu 1 287 -25 311 274 116 41 chr6 22446633 22446779 -166832775 - MIR3 SINE MIR -30 178 22 281 268 131 65 chr6 22446907 22447075 -166832479 + MIR SINE MIR 7 185 -77 1721 141 40 24 chr6 22448396 22448693 -166830861 - AluJo SINE Alu -10 302 1 3368 150 27 41 chr6 22449884 22450439 -166829115 - L1MB4 LINE L1 -25 6155 5609 1743 139 54 31 chr6 22450439 22450733 -166828821 - AluSx SINE Alu -11 301 1 3368 150 27 41 chr6 22450733 22450817 -166828737 - L1MB4 LINE L1 -571 5609 5525 2183 95 10 3 chr6 22451552 22451846 -166827708 + AluSq SINE Alu 1 296 -17 1032 171 34 6 chr6 22452323 22452498 -166827056 + AluJo SINE Alu 1 180 -132 1558 170 83 0 chr6 22452795 22453071 -166826483 + AluJb SINE Alu 1 299 -13 284 215 63 13 chr6 22453803 22453882 -166825672 + L2 LINE L2 3226 3308 -5 1932 81 12 4 chr6 22454104 22454363 -166825191 - AluSg SINE Alu -9 301 41 2945 156 117 9 chr6 22454523 22455069 -166824485 - MER6A DNA MER2_type 0 605 1 1939 120 7 30 chr6 22455431 22455732 -166823822 - AluSx SINE Alu -18 294 1 228 67 0 0 chr6 22456205 22456235 -166823319 + (GA)n Simple_repeat Simple_repeat 1 30 0 495 237 8 15 chr6 22456711 22456842 -166822712 - MIR3 SINE MIR -26 182 53 605 210 89 25 chr6 22458326 22458483 -166821071 - L1MC/D LINE L1 -2075 5733 5567 6702 119 13 7 chr6 22458483 22461198 -166818356 - L1PA13 LINE L1 -4 6159 3374 612 152 20 0 chr6 22461240 22461339 -166818215 - U6 snRNA snRNA -6 101 1 543 258 56 76 chr6 22461383 22461533 -166818021 - L1MC/D LINE L1 -832 5314 5163 2251 88 0 20 chr6 22461533 22461830 -166817724 + AluSc SINE Alu 1 291 -18 543 258 56 76 chr6 22461830 22461857 -166817697 - L1MC/D LINE L1 -983 5163 5137 279 0 0 0 chr6 22461857 22461888 -166817666 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 543 258 56 76 chr6 22461888 22462268 -166817286 - L1MC/D LINE L1 -1009 5137 4956 1786 170 20 0 chr6 22462268 22462574 -166816980 - AluJo SINE Alu 0 312 1 543 258 56 76 chr6 22462574 22462655 -166816899 - L1MC/D LINE L1 -1190 4956 4875 756 189 67 33 chr6 22463010 22463190 -166816364 + MER5A DNA MER1_type 1 186 -3 514 282 17 23 chr6 22463729 22463903 -166815651 + MER5B DNA MER1_type 1 173 -5 220 194 177 32 chr6 22465089 22465151 -166814403 - MIR3 SINE MIR -49 159 89 21 0 0 0 chr6 22465177 22465198 -166814356 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 22465567 22465594 -166813960 + AT_rich Low_complexity Low_complexity 1 27 0 1747 157 6 45 chr6 22466040 22466352 -166813202 - AluSx SINE Alu -12 300 1 2058 105 7 33 chr6 22467847 22468153 -166811401 + AluSx SINE Alu 1 298 -14 1812 134 31 0 chr6 22468554 22468815 -166810739 + AluJb SINE Alu 29 297 -15 395 278 18 100 chr6 22469357 22469579 -166809975 - L1ME LINE L1 -313 5877 5681 2447 100 0 0 chr6 22469579 22469890 -166809664 + AluSx SINE Alu 1 311 -1 395 278 18 100 chr6 22469890 22469948 -166809606 - L1ME LINE L1 -509 5681 5620 2237 77 0 4 chr6 22470077 22470351 -166809203 + AluY SINE Alu 1 273 -38 232 293 111 13 chr6 22470850 22471075 -166808479 - L1P4 LINE L1 -665 5501 5255 240 278 162 16 chr6 22471189 22471380 -166808174 - L1ME LINE L1 -1155 5060 4842 2211 129 0 0 chr6 22471392 22471694 -166807860 - AluSx SINE Alu -10 302 1 1365 147 14 142 chr6 22471812 22472158 -166807396 - AluJo SINE Alu 0 302 1 721 195 0 0 chr6 22472203 22472326 -166807228 + FLAM_C SINE Alu 2 124 -19 728 222 49 15 chr6 22472350 22472553 -166807001 - L1ME LINE L1 -4582 1814 1605 3215 154 47 25 chr6 22472603 22473155 -166806399 - MER21B LTR ERV1 -52 811 248 1388 152 124 56 chr6 22473156 22473478 -166806076 - MER21B-int LTR ERV1 -1783 2408 2065 1318 192 46 46 chr6 22473466 22473768 -166805786 - MER21B-int LTR ERV1 -2242 1949 1648 * 761 211 7 0 chr6 22473821 22473968 -166805586 - MER21B-int LTR ERV1 -2076 4682 4535 1484 227 28 25 chr6 22474047 22474400 -166805154 - MER21B-int LTR ERV1 -2554 1637 1284 5462 68 84 40 chr6 22474402 22475068 -166804486 - L1PB1 LINE L1 0 6151 5439 1992 140 0 0 chr6 22475068 22475347 -166804207 - AluSx SINE Alu -32 280 2 5462 68 84 40 chr6 22475347 22475514 -166804040 - L1PB1 LINE L1 -712 5439 5281 1668 265 32 47 chr6 22475514 22475618 -166803936 - MER21B-int LTR ERV1 -2897 1294 1190 2242 88 7 7 chr6 22475618 22475915 -166803639 - AluSg1 SINE Alu -12 297 1 1668 265 32 47 chr6 22475915 22476316 -166803238 - MER21B-int LTR ERV1 -3001 1190 797 3311 170 33 41 chr6 22476316 22476957 -166802597 - MER21B-int LTR ERV1 -3555 636 1 4049 170 36 10 chr6 22477017 22477712 -166801842 - MER21B LTR ERV1 -65 798 86 283 309 0 12 chr6 22477746 22477827 -166801727 - LTR67 LTR ERVL -476 81 2 723 252 100 41 chr6 22477852 22478341 -166801213 + HAL1 LINE L1 1812 2372 -135 185 268 0 18 chr6 22478635 22478691 -166800863 - L2 LINE L2 -667 2647 2593 254 133 67 0 chr6 22479287 22479332 -166800222 + L2 LINE L2 3262 3309 -4 293 244 30 60 chr6 22479911 22480079 -166799475 - L1ME4a LINE L1 -4 6117 5955 2223 101 10 0 chr6 22480236 22480534 -166799020 + AluSq SINE Alu 1 301 -12 292 250 8 52 chr6 22480691 22480817 -166798737 - L1ME4a LINE L1 -34 6036 1204 408 20 0 0 chr6 22480961 22481010 -166798544 + (CA)n Simple_repeat Simple_repeat 2 50 0 1475 192 75 0 chr6 22481341 22481622 -166797932 + AluJo SINE Alu 2 303 -9 205 229 241 0 chr6 22481630 22481713 -166797841 + MIR SINE MIR 66 168 -94 431 309 39 11 chr6 22482264 22482445 -166797109 + MIR SINE MIR 73 258 -4 338 321 58 14 chr6 22482492 22482795 -166796759 - MLT1K LTR MaLR -37 551 199 701 166 0 65 chr6 22483033 22483172 -166796382 - FLAM_A SINE Alu -3 130 1 1685 149 87 4 chr6 22484453 22484728 -166794826 - AluSx SINE Alu -14 298 1 2381 75 0 7 chr6 22485025 22485320 -166794234 + AluY SINE Alu 1 293 -18 529 270 41 63 chr6 22485324 22485677 -166793877 - MLT1K LTR MaLR -55 533 151 1047 125 69 86 chr6 22485971 22486074 -166793480 - Tigger2a DNA MER2_type -2278 430 327 497 192 117 17 chr6 22486074 22486194 -166793360 - FLAM_A SINE Alu -1 132 1 1047 125 69 86 chr6 22486194 22486322 -166793232 - Tigger2a DNA MER2_type -2381 327 203 516 219 70 0 chr6 22486478 22486592 -166792962 - MER5A DNA MER1_type -6 183 62 1113 121 17 116 chr6 22486661 22486845 -166792709 - Tigger2a DNA MER2_type -2499 209 51 1852 149 0 23 chr6 22486845 22487147 -166792407 + AluJb SINE Alu 1 295 -17 1113 121 17 116 chr6 22487147 22487194 -166792360 - Tigger2a DNA MER2_type -2657 51 1 619 170 222 0 chr6 22487203 22487356 -166792198 - MER33 DNA MER1_type -137 187 1 2202 105 3 7 chr6 22487462 22487757 -166791797 + AluSx SINE Alu 1 294 -18 241 241 69 0 chr6 22488221 22488279 -166791275 - L2 LINE L2 -42 3230 3169 192 175 25 0 chr6 22489809 22489849 -166789705 - L2 LINE L2 -1 3312 3272 238 273 0 0 chr6 22490455 22490510 -166789044 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr6 22491270 22491299 -166788255 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr6 22491535 22491562 -166787992 + (TA)n Simple_repeat Simple_repeat 1 27 0 267 133 0 0 chr6 22491973 22492018 -166787536 + (TG)n Simple_repeat Simple_repeat 2 46 0 298 57 0 0 chr6 22493350 22493385 -166786169 - U2 snRNA snRNA -153 35 1 1214 126 0 0 chr6 22493741 22493908 -166785646 + AluSg/x SINE Alu 136 302 -10 2039 127 3 7 chr6 22494231 22494530 -166785024 + AluSx SINE Alu 1 298 -14 2504 42 0 0 chr6 22495220 22495507 -166784047 - AluY SINE Alu -24 287 1 1022 196 4 71 chr6 22496651 22496891 -166782663 - MER58A DNA MER1_type 0 224 1 2262 79 4 0 chr6 22497650 22497953 -166781601 + AluSc SINE Alu 2 305 0 975 122 20 0 chr6 22498272 22498419 -166781135 + FAM SINE Alu 20 169 -16 1785 159 36 0 chr6 22498628 22498905 -166780649 + AluJo SINE Alu 1 287 -25 24 32 0 0 chr6 22499510 22499541 -166780013 + AT_rich Low_complexity Low_complexity 1 31 0 196 281 18 0 chr6 22501011 22501068 -166778486 + L2 LINE L2 3252 3309 -4 196 115 0 58 chr6 22502143 22502195 -166777359 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 2398 90 6 6 chr6 22502721 22503033 -166776521 - AluSx SINE Alu 0 312 1 358 261 67 25 chr6 22503320 22503439 -166776115 - L3 LINE CR1 -547 1030 907 335 180 22 22 chr6 22503537 22503626 -166775928 - L1ME4a LINE L1 -105 6016 5928 2317 106 3 0 chr6 22503626 22503937 -166775617 - AluSx SINE Alu 0 312 1 1620 162 0 24 chr6 22503949 22504246 -166775308 - AluJo SINE Alu 0 312 23 2179 118 3 0 chr6 22504403 22504699 -166774855 - AluSx SINE Alu -15 297 1 978 218 105 16 chr6 22504820 22505077 -166774477 - L1MB5 LINE L1 -10 6164 5885 1749 107 21 0 chr6 22505077 22505319 -166774235 - AluSx SINE Alu -6 306 60 1963 115 23 36 chr6 22505487 22505791 -166773763 + AluSx SINE Alu 1 300 -12 2431 80 0 7 chr6 22505791 22506091 -166773463 + AluSc SINE Alu 1 298 -11 284 159 0 16 chr6 22506212 22506275 -166773279 + GA-rich Low_complexity Low_complexity 4 65 0 192 267 0 0 chr6 22506394 22506439 -166773115 - L2 LINE L2 -22 3291 3247 360 0 0 0 chr6 22508466 22508506 -166771048 + (TG)n Simple_repeat Simple_repeat 2 41 0 1665 109 0 0 chr6 22508971 22509191 -166770363 - AluSx SINE Alu -75 237 18 1955 135 27 80 chr6 22509191 22509236 -166770318 + L1MB1 LINE L1 5788 5834 -334 716 101 0 0 chr6 22509236 22509335 -166770219 + HY3 scRNA scRNA 2 100 -1 1955 135 27 80 chr6 22509335 22509690 -166769864 + L1MB1 LINE L1 5834 6167 -1 9956 230 49 21 chr6 22509695 22509906 -166769648 + L1M4 LINE L1 2269 2473 -3673 2368 70 3 10 chr6 22509906 22510206 -166769348 + AluY SINE Alu 1 298 -13 9956 230 49 21 chr6 22510206 22510318 -166769236 + L1M4 LINE L1 2473 2580 -3566 2347 104 0 3 chr6 22510318 22510626 -166768928 + AluSx SINE Alu 1 307 -5 9956 230 49 21 chr6 22510626 22512249 -166767305 + L1M4 LINE L1 2580 4156 -1990 2178 91 54 7 chr6 22512249 22512545 -166767009 + AluY SINE Alu 1 310 -1 9956 230 49 21 chr6 22512545 22512710 -166766844 + L1M4 LINE L1 4156 4315 -1831 2434 95 0 0 chr6 22512710 22513014 -166766540 + AluSx SINE Alu 1 304 -8 9956 230 49 21 chr6 22513014 22513697 -166765857 + L1M4 LINE L1 4315 5144 -1002 26 30 0 0 chr6 22513817 22513850 -166765704 + AT_rich Low_complexity Low_complexity 1 33 0 1378 165 0 0 chr6 22514081 22514293 -166765261 + AluSx SINE Alu 1 212 -100 455 69 0 0 chr6 22514293 22514351 -166765203 + AluSq/x SINE Alu 78 135 -177 1879 157 23 0 chr6 22514351 22514656 -166764898 + AluSx SINE Alu 1 312 0 2143 128 7 0 chr6 22515654 22515951 -166763603 - AluSx SINE Alu -13 299 1 2177 109 3 0 chr6 22516196 22516520 -166763034 - AluSq SINE Alu 0 325 1 1358 209 50 26 chr6 22517400 22517695 -166761859 + MLT2D LTR ERVL 68 373 -41 305 24 24 0 chr6 22517695 22517737 -166761817 + (CA)n Simple_repeat Simple_repeat 1 43 0 1358 209 50 26 chr6 22517737 22517780 -166761774 + MLT2D LTR ERVL 373 414 0 1731 140 16 51 chr6 22517843 22518158 -166761396 + AluJo SINE Alu 1 304 -8 404 236 112 39 chr6 22518365 22518543 -166761011 + MLT1K LTR MaLR 395 585 -3 216 0 0 0 chr6 22518595 22518619 -166760935 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 564 165 21 0 chr6 22518751 22518848 -166760706 + MER53 DNA DNA 3 101 -88 1679 113 36 0 chr6 22519011 22519233 -166760321 + AluSx SINE Alu 1 230 -82 692 338 50 7 chr6 22519268 22519567 -166759987 - L2 LINE L2 -564 2750 2439 1574 175 7 24 chr6 22519693 22519985 -166759569 + AluJo SINE Alu 1 287 -25 2480 94 0 0 chr6 22520013 22520321 -166759233 + AluSg SINE Alu 1 308 -2 26 64 0 0 chr6 22520370 22520417 -166759137 + AT_rich Low_complexity Low_complexity 1 47 0 1673 153 52 8 chr6 22520441 22520709 -166758845 - AluJb SINE Alu -22 290 11 367 203 0 0 chr6 22520719 22520788 -166758766 - MIR SINE MIR -110 152 84 2262 175 15 111 chr6 22520856 22521384 -166758170 - MLT1F LTR MaLR -10 532 64 2236 99 3 3 chr6 22521384 22521686 -166757868 + AluY SINE Alu 1 302 -9 2262 175 15 111 chr6 22521686 22521745 -166757809 - MLT1F LTR MaLR -478 64 1 336 281 154 41 chr6 22522015 22522236 -166757318 + L2 LINE L2 2813 3058 -255 2180 113 0 23 chr6 22522486 22522795 -166756759 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr6 22522876 22522902 -166756652 + AT_rich Low_complexity Low_complexity 1 26 0 769 287 26 0 chr6 22522977 22523172 -166756382 + MER63A DNA MER1_type 7 206 -4 1142 164 0 0 chr6 22523547 22523712 -166755842 + FAM SINE Alu 1 165 -10 198 262 0 0 chr6 22523721 22523763 -166755791 - MIR SINE MIR -81 127 86 2222 132 0 6 chr6 22523765 22524076 -166755478 - AluSx SINE Alu -3 309 1 2351 83 0 3 chr6 22524100 22524401 -166755153 - AluY SINE Alu -11 300 1 1765 137 49 7 chr6 22524702 22524986 -166754568 - AluJo SINE Alu -16 296 1 372 299 63 124 chr6 22525181 22525270 -166754284 + MLT1K LTR MaLR 27 120 -468 2171 121 10 0 chr6 22525270 22525568 -166753986 - AluSx SINE Alu -11 301 1 372 299 63 124 chr6 22525568 22525624 -166753930 + MLT1K LTR MaLR 120 178 -410 330 167 0 0 chr6 22525624 22525678 -166753876 + L1MB7 LINE L1 6131 6184 0 372 299 63 124 chr6 22525678 22525879 -166753675 + MLT1K LTR MaLR 178 353 -235 831 226 129 85 chr6 22525976 22526481 -166753073 - MER34B LTR ERV1 0 565 39 1119 164 226 4 chr6 22526499 22526747 -166752807 + AluJo SINE Alu 9 306 0 275 109 19 28 chr6 22526760 22526814 -166752740 - MER34C LTR ERV1 -502 83 1 1969 144 3 7 chr6 22526945 22527244 -166752310 + AluSx SINE Alu 1 298 -14 2288 116 0 3 chr6 22527338 22527649 -166751905 + AluSx SINE Alu 1 310 -2 2349 100 3 0 chr6 22527921 22528222 -166751332 - AluSp SINE Alu -10 303 2 2103 116 0 0 chr6 22528659 22528943 -166750611 + AluSx SINE Alu 1 284 -28 961 189 6 0 chr6 22528976 22529145 -166750409 + AluJb SINE Alu 137 306 -6 33 0 0 0 chr6 22529427 22529460 -166750094 + AT_rich Low_complexity Low_complexity 1 33 0 513 121 0 0 chr6 22529461 22529544 -166750010 - L1MB4 LINE L1 0 6180 6098 2254 101 0 3 chr6 22529544 22529842 -166749712 - AluSx SINE Alu -15 297 1 27 0 0 0 chr6 22529890 22529917 -166749637 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 22529938 22529966 -166749588 + AT_rich Low_complexity Low_complexity 1 28 0 4563 131 17 27 chr6 22529966 22530207 -166749347 - L1MA4 LINE L1 -11 6289 6047 1966 146 0 20 chr6 22530207 22530508 -166749046 - AluSx SINE Alu -17 295 1 4563 131 17 27 chr6 22530508 22531015 -166748539 - L1MA4 LINE L1 -253 6047 5548 1718 146 3 51 chr6 22531539 22531854 -166747700 - AluJb SINE Alu -12 300 1 202 188 43 43 chr6 22532172 22532241 -166747313 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 246 266 16 16 chr6 22532555 22532619 -166746935 - MLT1K LTR MaLR -379 209 146 2421 92 0 9 chr6 22533591 22533907 -166745647 - AluSq SINE Alu 0 313 1 558 199 30 66 chr6 22534051 22534123 -166745431 + L1MD3 LINE L1 7826 7899 -96 5483 65 5 0 chr6 22534123 22534780 -166744774 + L1PA6 LINE L1 5495 6154 0 558 199 30 66 chr6 22534780 22534873 -166744681 + L1MD3 LINE L1 7899 7985 -10 1119 268 194 35 chr6 22534880 22535365 -166744189 + L2 LINE L2 2329 2890 -424 1421 135 0 5 chr6 22535368 22535575 -166743979 - AluJo SINE Alu -24 288 83 857 283 62 64 chr6 22535581 22535893 -166743661 + L2 LINE L2 2891 3203 -110 2396 85 10 0 chr6 22535893 22536200 -166743354 - AluSg SINE Alu 0 310 1 857 283 62 64 chr6 22536200 22536293 -166743261 + L2 LINE L2 3203 3295 -18 797 203 16 96 chr6 22536465 22536678 -166742876 - MLT1K LTR MaLR -4 584 392 2409 87 0 0 chr6 22536678 22536977 -166742577 + AluY SINE Alu 1 299 -12 797 203 16 96 chr6 22536977 22537014 -166742540 - MLT1K LTR MaLR -196 392 354 1671 172 10 10 chr6 22537259 22537555 -166741999 + AluJb SINE Alu 11 306 -6 1043 90 0 0 chr6 22537874 22538008 -166741546 + AluSq/x SINE Alu 1 134 -178 2126 115 0 16 chr6 22538009 22538314 -166741240 + AluSx SINE Alu 1 300 -12 1197 123 0 0 chr6 22538623 22538786 -166740768 + AluSx SINE Alu 1 163 -149 24 0 0 0 chr6 22538841 22538865 -166740689 + AT_rich Low_complexity Low_complexity 1 24 0 1612 178 7 7 chr6 22539058 22539345 -166740209 + AluJo SINE Alu 1 287 -25 1621 174 45 3 chr6 22539383 22539671 -166739883 - AluJb SINE Alu -12 300 1 2287 101 0 0 chr6 22539811 22540107 -166739447 - AluSg SINE Alu -14 296 1 2262 105 0 0 chr6 22540560 22540856 -166738698 - AluY SINE Alu -15 296 1 2293 102 3 7 chr6 22540856 22541161 -166738393 - AluSq SINE Alu -7 306 3 328 277 17 25 chr6 22541184 22541303 -166738251 - L1MC/D LINE L1 -2016 5792 5675 334 253 111 10 chr6 22541341 22541440 -166738114 - L1MC/D LINE L1 -2090 5718 5610 203 333 97 30 chr6 22541493 22541658 -166737896 + L2 LINE L2 2442 2617 -697 243 0 0 0 chr6 22542140 22542167 -166737387 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1091 169 0 0 chr6 22542279 22542456 -166737098 + AluJb SINE Alu 132 308 -4 712 139 0 26 chr6 22542566 22542681 -166736873 - FLAM_A SINE Alu -1 141 30 402 291 145 9 chr6 22543132 22543359 -166736195 + MIR SINE MIR 3 260 -2 315 327 90 41 chr6 22544582 22544848 -166734706 + L2 LINE L2 1908 2186 -1128 852 135 47 0 chr6 22544852 22545000 -166734554 - L1M4 LINE L1 -670 5514 5360 1470 159 31 38 chr6 22545005 22545294 -166734260 - AluJb SINE Alu -25 287 1 1207 200 4 36 chr6 22545317 22545592 -166733962 - L1M4 LINE L1 -1010 5136 4871 553 254 57 0 chr6 22545647 22545769 -166733785 - MER5A DNA MER1_type 0 189 61 657 148 148 25 chr6 22545770 22545892 -166733662 + FLAM_C SINE Alu 2 138 -5 352 197 15 0 chr6 22545896 22545962 -166733592 - MER5A DNA MER1_type -122 67 1 371 244 89 41 chr6 22545964 22546087 -166733467 - MER5B DNA MER1_type 0 178 50 744 62 0 0 chr6 22546088 22546184 -166733370 - AluY SINE Alu 0 311 216 243 263 0 0 chr6 22546190 22546247 -166733307 - MER5B DNA MER1_type -120 58 2 272 367 86 8 chr6 22546258 22546386 -166733168 - MER5B DNA MER1_type -2 176 39 2445 78 3 7 chr6 22546386 22546692 -166732862 + AluSq SINE Alu 2 306 -7 387 260 67 0 chr6 22547076 22547180 -166732374 - L1MC/D LINE L1 -2150 5658 5548 182 324 261 18 chr6 22547438 22547549 -166732005 + MIR SINE MIR 16 153 -55 220 338 0 50 chr6 22547790 22547870 -166731684 - L3 LINE CR1 -7 1570 1495 929 262 101 42 chr6 22547911 22548297 -166731257 - L2 LINE L2 -1 3312 2904 2386 255 144 31 chr6 22548343 22549138 -166730416 - L2 LINE L2 -15 3298 2594 2254 105 0 3 chr6 22549138 22549433 -166730121 - AluSg SINE Alu -16 294 1 2386 255 144 31 chr6 22549433 22549519 -166730035 - L2 LINE L2 -719 2594 2519 2186 114 0 3 chr6 22549519 22549816 -166729738 - AluSq SINE Alu -17 296 1 2386 255 144 31 chr6 22549816 22550106 -166729448 - L2 LINE L2 -794 2519 2011 307 159 261 0 chr6 22550109 22550197 -166729357 + MER103 DNA DNA 55 165 -1 1069 280 111 24 chr6 22550285 22550707 -166728847 - MLT1K LTR MaLR -4 584 126 2366 82 3 0 chr6 22550726 22551019 -166728535 - AluSp SINE Alu -18 295 2 451 241 57 14 chr6 22551455 22551596 -166727958 + MIR SINE MIR 89 235 -27 4741 174 94 25 chr6 22551654 22552793 -166726761 - L1MD1 LINE L1 -11 6625 5566 2286 112 0 3 chr6 22552793 22553098 -166726456 - AluSx SINE Alu -8 304 1 4741 174 94 25 chr6 22553098 22553376 -166726178 - L1MD1 LINE L1 -1070 5566 5309 2666 33 3 0 chr6 22553376 22553682 -166725872 + AluY SINE Alu 1 307 -4 4741 174 94 25 chr6 22553682 22553845 -166725709 - L1MD1 LINE L1 -1327 5309 4959 1652 218 183 16 chr6 22553842 22554026 -166725528 - L1MD1 LINE L1 -5942 598 446 * 282 29 0 0 chr6 22554026 22554061 -166725493 + (TG)n Simple_repeat Simple_repeat 2 36 0 1652 218 183 16 chr6 22554061 22554368 -166725186 - L1MD1 LINE L1 -6094 446 25 21 36 0 0 chr6 22554386 22554414 -166725140 + AT_rich Low_complexity Low_complexity 1 28 0 1937 135 21 0 chr6 22554499 22554781 -166724773 - AluSx SINE Alu -14 298 11 276 171 0 0 chr6 22554781 22554822 -166724732 - Alu SINE Alu -258 41 1 730 264 65 74 chr6 22554843 22555354 -166724200 - L1MC5 LINE L1 -186 7775 7270 2248 110 0 0 chr6 22555613 22555914 -166723640 - AluSx SINE Alu -11 301 1 1390 146 39 26 chr6 22556017 22556250 -166723304 - MER46A DNA MER2_type 0 236 1 1767 164 7 3 chr6 22557320 22557607 -166721947 + AluJb SINE Alu 9 296 -16 21 36 0 0 chr6 22557777 22557805 -166721749 + AT_rich Low_complexity Low_complexity 1 28 0 4322 214 64 48 chr6 22557934 22558641 -166720913 - L1MC4a LINE L1 0 7808 7114 2042 117 7 0 chr6 22558641 22558967 -166720587 - AluSx SINE Alu 0 328 1 4322 214 64 48 chr6 22558967 22559046 -166720508 - L1MC4a LINE L1 -694 7114 7038 2125 113 7 3 chr6 22559046 22559338 -166720216 - AluSx SINE Alu -19 293 1 4322 214 64 48 chr6 22559338 22559733 -166719821 - L1MC4a LINE L1 -770 7038 6606 254 298 124 50 chr6 22559803 22559921 -166719633 - MIR SINE MIR -18 244 109 2373 86 3 0 chr6 22559921 22560225 -166719329 - AluY SINE Alu -6 305 1 254 298 124 50 chr6 22560225 22560267 -166719287 - MIR SINE MIR -153 109 72 2403 70 0 10 chr6 22560431 22560730 -166718824 - AluY SINE Alu -15 296 1 182 33 67 0 chr6 22560941 22560971 -166718583 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 659 155 10 10 chr6 22560973 22561076 -166718478 - FLAM_A SINE Alu -27 115 13 1531 158 13 49 chr6 22561114 22561418 -166718136 + AluJb SINE Alu 1 293 -19 23 54 0 0 chr6 22561476 22561513 -166718041 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 22561718 22561755 -166717799 + AT_rich Low_complexity Low_complexity 1 37 0 2257 107 3 0 chr6 22562288 22562586 -166716968 + AluSx SINE Alu 1 299 -13 1848 156 0 3 chr6 22562683 22562972 -166716582 - AluSx SINE Alu -24 288 1 1431 139 10 0 chr6 22562976 22563178 -166716376 - AluSx SINE Alu -108 204 1 469 315 5 22 chr6 22563444 22563628 -166715926 - MARNA DNA Mariner -165 421 241 295 193 53 0 chr6 22563773 22563830 -166715724 + MARNA DNA Mariner 456 515 -71 2207 129 0 0 chr6 22564369 22564679 -166714875 - AluSg SINE Alu 0 310 1 2510 61 0 0 chr6 22564686 22564982 -166714572 - AluY SINE Alu -15 296 1 2044 136 0 0 chr6 22565143 22565437 -166714117 + AluSq SINE Alu 1 294 -19 2220 84 0 17 chr6 22565816 22566177 -166713377 + AluY SINE Alu 1 356 0 226 137 20 20 chr6 22566606 22566657 -166712897 + L1MCa LINE L1 2006 2056 -4370 2108 105 0 14 chr6 22566705 22567029 -166712525 + AluSx SINE Alu 1 320 0 747 94 0 0 chr6 22567892 22567988 -166711566 - AluJ/FLAM SINE Alu -215 97 2 22 35 0 0 chr6 22568788 22568817 -166710737 + AT_rich Low_complexity Low_complexity 1 29 0 2387 90 7 0 chr6 22570220 22570530 -166709024 + AluSx SINE Alu 1 312 0 378 266 252 7 chr6 22570561 22570700 -166708854 + MIR SINE MIR 37 209 -53 1917 135 38 10 chr6 22571528 22571817 -166707737 + AluSx SINE Alu 1 297 -15 696 201 0 15 chr6 22572573 22572707 -166706847 - FLAM_C SINE Alu -1 132 1 238 287 93 39 chr6 22573027 22573156 -166706398 + MIR SINE MIR 63 198 -64 579 219 0 0 chr6 22573203 22573308 -166706246 + FLAM_A SINE Alu 18 122 -20 23 0 0 0 chr6 22574200 22574223 -166705331 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22575541 22575569 -166703985 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 22575916 22575944 -166703610 + AT_rich Low_complexity Low_complexity 1 28 0 555 104 0 0 chr6 22576240 22576317 -166703237 - MADE1 DNA Mariner -1 79 3 207 0 0 0 chr6 22576759 22576782 -166702772 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1786 155 0 37 chr6 22576788 22576941 -166702613 - AluJo SINE Alu -26 286 148 2301 64 0 7 chr6 22576941 22577236 -166702318 - AluY SINE Alu -17 294 2 1786 155 0 37 chr6 22577236 22577379 -166702175 - AluJo SINE Alu -164 148 1 2594 39 3 6 chr6 22577513 22577825 -166701729 + AluY SINE Alu 1 311 0 272 273 230 0 chr6 22577944 22578105 -166701449 + L2 LINE L2 3112 3309 -4 39 0 0 0 chr6 22579131 22579170 -166700384 + AT_rich Low_complexity Low_complexity 1 39 0 2188 96 14 0 chr6 22579170 22579462 -166700092 - AluSc SINE Alu -13 296 1 2047 123 0 0 chr6 22579468 22579744 -166699810 - AluSx SINE Alu -19 293 18 383 286 0 0 chr6 22580262 22580346 -166699208 + MIR3 SINE MIR 73 156 -52 22 35 0 0 chr6 22580643 22580672 -166698882 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr6 22584502 22584527 -166695027 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr6 22585969 22585992 -166693562 + AT_rich Low_complexity Low_complexity 1 23 0 309 333 252 0 chr6 22586530 22586665 -166692889 + L2 LINE L2 3102 3270 -2 1161 207 61 52 chr6 22587231 22587560 -166691994 - L1ME2 LINE L1 0 6164 5833 201 238 175 0 chr6 22587685 22587748 -166691806 - MIR SINE MIR -6 256 183 1987 122 3 7 chr6 22588052 22588338 -166691216 - AluSx SINE Alu -26 286 2 686 267 62 50 chr6 22588532 22588772 -166690782 - MIR SINE MIR -7 255 13 2252 79 4 0 chr6 22589856 22590133 -166689421 - AluSp SINE Alu -19 294 17 22 56 0 0 chr6 22590565 22590601 -166688953 + AT_rich Low_complexity Low_complexity 1 36 0 224 290 0 0 chr6 22590918 22590980 -166688574 - MIR SINE MIR -1 261 200 29 0 0 0 chr6 22592970 22592999 -166686555 + AT_rich Low_complexity Low_complexity 1 29 0 2799 256 126 46 chr6 22593850 22594114 -166685440 + L2 LINE L2 1421 1662 -1652 2480 44 17 3 chr6 22594114 22594412 -166685142 - AluY SINE Alu -9 302 1 2799 256 126 46 chr6 22594412 22595371 -166684183 + L2 LINE L2 1662 2742 -572 778 153 68 62 chr6 22595372 22595414 -166684140 + MER3 DNA MER1_type 1 41 -121 2206 103 3 7 chr6 22595414 22595715 -166683839 + AluSx SINE Alu 1 300 -12 778 153 68 62 chr6 22595715 22595849 -166683705 + MER3 DNA MER1_type 41 131 -31 414 232 195 60 chr6 22595849 22596034 -166683520 + L2 LINE L2 2768 2977 -337 2336 101 0 0 chr6 22596039 22596347 -166683207 - AluSq SINE Alu -5 308 1 1867 157 0 0 chr6 22596511 22596814 -166682740 + AluJo SINE Alu 1 303 0 1691 170 3 7 chr6 22596874 22597181 -166682373 + AluJo SINE Alu 1 306 0 588 297 68 40 chr6 22598944 22599166 -166680388 + MIR SINE MIR 16 243 -19 295 310 109 22 chr6 22599209 22599393 -166680161 + MIR SINE MIR 48 247 -15 31633 102 13 58 chr6 22599412 22601529 -166678025 - L1PA7 LINE L1 0 6154 3942 2040 134 3 3 chr6 22601529 22601827 -166677727 - AluSg SINE Alu -12 298 1 31633 102 13 58 chr6 22601827 22606168 -166673386 - L1PA7 LINE L1 -2212 3942 2 2287 97 0 0 chr6 22606178 22606478 -166673076 - AluY SINE Alu -1 310 11 2097 142 0 0 chr6 22606479 22606775 -166672779 - AluSx SINE Alu -16 296 1 26 30 0 0 chr6 22607913 22607946 -166671608 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 22608066 22608100 -166671454 + AT_rich Low_complexity Low_complexity 1 34 0 237 65 0 0 chr6 22609818 22609849 -166669705 + (TA)n Simple_repeat Simple_repeat 2 32 0 269 347 95 7 chr6 22610747 22610894 -166668660 - MIR3 SINE MIR -3 205 46 508 347 23 12 chr6 22611074 22611318 -166668236 - MIR SINE MIR 0 262 14 180 375 50 19 chr6 22611723 22611883 -166667671 - L3 LINE CR1 -1410 167 3 1998 303 31 11 chr6 22612174 22612828 -166666726 + ERVL LTR ERVL 3230 3896 -1868 1449 82 0 0 chr6 22612829 22613013 -166666541 - AluSg/x SINE Alu -4 308 125 4651 277 34 12 chr6 22613014 22614377 -166665177 + ERVL LTR ERVL 3889 5281 -483 2039 234 96 12 chr6 22614379 22614960 -166664594 - L1MEc LINE L1 -5353 1043 414 1011 254 51 14 chr6 22614967 22615242 -166664312 - L1MEc LINE L1 -6030 366 82 406 309 56 5 chr6 22615927 22616128 -166663426 - MIR SINE MIR -13 249 33 2306 110 7 0 chr6 22616746 22617055 -166662499 - AluSx SINE Alu -1 311 1 563 168 42 18 chr6 22618277 22618444 -166661110 + CT-rich Low_complexity Low_complexity 4 174 0 2044 126 0 0 chr6 22618444 22618721 -166660833 - AluSx SINE Alu 0 312 36 5063 86 8 3 chr6 22618836 22619543 -166660011 - L1PA13 LINE L1 -2 6161 5451 217 244 0 0 chr6 22619681 22619726 -166659828 + CT-rich Low_complexity Low_complexity 2 46 0 517 158 24 0 chr6 22619954 22620036 -166659518 - FRAM/FAM SINE Alu -94 82 1 521 300 70 26 chr6 22620039 22620422 -166659132 - HAL1 LINE L1 -910 1597 1198 342 111 0 0 chr6 22620427 22620472 -166659082 - AluS SINE Alu -239 64 20 6306 132 24 7 chr6 22620676 22621907 -166657647 - L1MA4A LINE L1 -11 6292 5048 495 0 0 0 chr6 22622051 22622106 -166657448 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 205 0 0 chr6 22622126 22622165 -166657389 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2285 125 0 0 chr6 22622323 22622635 -166656919 - AluSx SINE Alu 0 312 1 967 256 97 44 chr6 22622729 22623182 -166656372 - L1MC/D LINE L1 -2024 5784 5308 314 323 48 26 chr6 22623350 22623539 -166656015 - L1MA4A LINE L1 -1071 5075 4883 302 265 128 15 chr6 22623624 22623828 -166655726 - L1MC5 LINE L1 -48 7913 7687 9916 20 0 0 chr6 22623841 22625769 -166653785 - L1PA2 LINE L1 -2 6153 4226 1705 164 34 10 chr6 22625782 22625900 -166653654 + AluJb SINE Alu 1 115 -197 387 0 0 0 chr6 22625900 22625943 -166653611 + (CA)n Simple_repeat Simple_repeat 1 43 0 1705 164 34 10 chr6 22625943 22626116 -166653438 + AluJb SINE Alu 115 299 -13 6908 64 11 0 chr6 22626480 22627577 -166651977 - L1PA6 LINE L1 -4 6150 5051 1924 163 0 0 chr6 22627737 22628037 -166651517 - AluJb SINE Alu -10 302 3 1074 196 78 4 chr6 22628319 22628574 -166650980 + L1MA8 LINE L1 6016 6289 -2 604 311 58 0 chr6 22629437 22629653 -166649901 - MIR SINE MIR -12 250 19 1325 144 73 33 chr6 22629809 22630111 -166649443 - L1MC2 LINE L1 -11 7746 6138 4347 154 62 34 chr6 22630243 22631153 -166648401 - L1MC3 LINE L1 -331 7454 6520 255 276 41 87 chr6 22631222 22631418 -166648136 - HAL1b LINE L1 -610 738 552 308 29 0 0 chr6 22631752 22631787 -166647767 - U2 snRNA snRNA -153 35 1 202 184 53 0 chr6 22631910 22631948 -166647606 - MIR3 SINE MIR -46 162 123 777 255 100 4 chr6 22632821 22633052 -166646502 + MIR SINE MIR 6 258 -4 228 178 22 0 chr6 22635414 22635459 -166644095 + L2 LINE L2 3267 3312 -1 248 237 0 17 chr6 22635642 22635701 -166643853 - MLT1L LTR MaLR -12 603 546 373 284 49 66 chr6 22635767 22636010 -166643544 - MLT1J LTR MaLR -169 342 104 2241 251 31 33 chr6 22636535 22637386 -166642168 - L1M4 LINE L1 -1372 4774 3926 1930 195 21 12 chr6 22637928 22638553 -166641001 - L1MC4 LINE L1 -95 7713 7155 1960 123 3 48 chr6 22638914 22639224 -166640330 - AluSx SINE Alu -11 301 6 405 277 71 49 chr6 22639797 22639981 -166639573 + MIR SINE MIR 23 210 -52 309 327 75 28 chr6 22640384 22640598 -166638956 + L2 LINE L2 2302 2525 -789 239 264 33 22 chr6 22640957 22641048 -166638506 - L1ME4a LINE L1 -94 6027 5936 2163 186 50 0 chr6 22641124 22641521 -166638033 - MER47B DNA MER2_type 0 418 2 202 222 22 0 chr6 22641733 22641778 -166637776 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 285 279 41 54 chr6 22641904 22642051 -166637503 - L2 LINE L2 -183 3089 2945 319 191 0 15 chr6 22642113 22642181 -166637373 - L1MB8 LINE L1 0 6178 6112 3937 173 36 8 chr6 22642188 22642962 -166636592 - L1MB8 LINE L1 -111 6067 5272 438 269 64 95 chr6 22643565 22643756 -166635798 - L2 LINE L2 -665 2649 2468 2355 103 3 0 chr6 22643756 22644066 -166635488 + AluSq SINE Alu 1 311 -2 438 269 64 95 chr6 22644066 22644157 -166635397 - L2 LINE L2 -846 2468 2376 1145 256 63 94 chr6 22644164 22644493 -166635061 + LTR33A LTR ERVL 1 339 -184 1246 132 66 31 chr6 22644493 22644721 -166634833 - MER46A DNA MER2_type 0 236 1 1145 256 63 94 chr6 22644721 22644781 -166634773 + LTR33A LTR ERVL 339 399 -124 1333 228 67 92 chr6 22644781 22645334 -166634220 - MER34 LTR ERV1 -3 539 1 1145 256 63 94 chr6 22645334 22645483 -166634071 + LTR33A LTR ERVL 399 523 0 362 271 207 55 chr6 22645483 22645816 -166633738 - L2 LINE L2 -941 2373 2092 2432 90 3 0 chr6 22645816 22646127 -166633427 + AluSx SINE Alu 1 312 0 362 271 207 55 chr6 22646127 22646339 -166633215 - L2 LINE L2 -1222 2092 1745 2278 93 3 0 chr6 22646341 22646642 -166632912 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr6 22646701 22646722 -166632832 + AT_rich Low_complexity Low_complexity 1 21 0 1177 273 159 28 chr6 22646776 22647488 -166632066 - L1MC4a LINE L1 -1742 6066 5262 2094 91 0 69 chr6 22647673 22647992 -166631562 - AluSc SINE Alu -12 297 1 2327 92 0 0 chr6 22648721 22649024 -166630530 - AluSg SINE Alu -2 308 6 661 293 83 18 chr6 22649798 22650027 -166629527 + MIR SINE MIR 18 261 -1 436 303 82 50 chr6 22650571 22651146 -166628408 - L1MC4a LINE L1 -1802 6006 5414 392 316 114 0 chr6 22651167 22651395 -166628159 + L1MC/D LINE L1 4975 5228 -918 1030 281 37 51 chr6 22651457 22651892 -166627662 + L1MC/D LINE L1 5281 5709 -2099 301 136 22 6 chr6 22651892 22652006 -166627548 + Alu SINE Alu 239 328 0 22 0 0 0 chr6 22652435 22652457 -166627097 + AT_rich Low_complexity Low_complexity 1 22 0 1887 161 0 26 chr6 22652883 22653193 -166626361 - AluSx SINE Alu -10 302 1 39 0 0 0 chr6 22653196 22653235 -166626319 + AT_rich Low_complexity Low_complexity 1 39 0 371 266 80 26 chr6 22653250 22653363 -166626191 + L2 LINE L2 3193 3311 -2 2281 68 41 10 chr6 22653456 22653750 -166625804 + AluY SINE Alu 1 303 -8 5008 113 46 75 chr6 22653895 22654510 -166625044 - Tigger3b DNA MER2_type -1797 1231 599 2131 100 0 4 chr6 22654510 22654830 -166624724 + AluSc SINE Alu 1 319 0 5008 113 46 75 chr6 22654830 22655109 -166624445 - Tigger3b DNA MER2_type -2429 599 365 2338 108 0 0 chr6 22655109 22655415 -166624139 - AluSg SINE Alu -4 306 1 5008 113 46 75 chr6 22655415 22655505 -166624049 - Tigger3b DNA MER2_type -2663 365 274 592 194 0 0 chr6 22655503 22655601 -166623953 - Tigger3b DNA MER2_type -1129 102 5 * 2289 91 0 3 chr6 22655809 22656105 -166623449 - AluSq SINE Alu -18 295 1 391 268 0 31 chr6 22656235 22656332 -166623222 - L2 LINE L2 -3 3269 3176 331 210 37 105 chr6 22656791 22656953 -166622601 - L2 LINE L2 -577 2737 2587 1304 86 0 0 chr6 22656986 22657149 -166622405 + AluY SINE Alu 133 295 -16 2084 111 0 17 chr6 22657189 22657486 -166622068 - AluSg1 SINE Alu -15 294 3 11710 115 9 1 chr6 22658620 22661183 -166618371 - L1PA10 LINE L1 -2 6166 3581 232 280 129 11 chr6 22661864 22661957 -166617597 - L1ME3A LINE L1 -104 6066 5963 898 285 110 10 chr6 22662029 22662510 -166617044 - L1ME3A LINE L1 -222 5948 5420 2081 114 0 29 chr6 22662510 22662679 -166616875 - AluSx SINE Alu -10 302 144 2215 98 7 0 chr6 22662679 22662966 -166616588 - AluSc SINE Alu -15 294 6 2081 114 0 29 chr6 22662966 22663102 -166616452 - AluSx SINE Alu -168 144 6 1071 90 0 0 chr6 22663110 22663243 -166616311 - AluSq/x SINE Alu -179 133 1 1160 254 108 43 chr6 22663247 22664087 -166615467 - L1ME3A LINE L1 -769 5377 4529 2050 154 3 26 chr6 22664485 22664830 -166614724 + MER1B DNA MER1_type 1 337 0 642 255 56 68 chr6 22664995 22665246 -166614308 - MIR SINE MIR -14 248 1 194 368 47 0 chr6 22665251 22665357 -166614197 - L2 LINE L2 -999 2315 2205 1636 164 0 63 chr6 22667878 22668195 -166611359 - AluJb SINE Alu -15 297 1 28 0 0 0 chr6 22668198 22668226 -166611328 + AT_rich Low_complexity Low_complexity 1 28 0 387 307 14 61 chr6 22668658 22668870 -166610684 + L2 LINE L2 2205 2406 -908 250 314 95 9 chr6 22670116 22670221 -166609333 + L2 LINE L2 3200 3313 0 205 282 141 12 chr6 22671661 22671746 -166607808 + L2 LINE L2 3137 3232 -40 386 287 25 102 chr6 22672072 22672386 -166607168 - MLT1J LTR MaLR -196 315 26 1342 259 58 22 chr6 22674227 22674675 -166604879 - MER20B DNA MER1_type 0 783 320 575 215 56 28 chr6 22674694 22674838 -166604716 - MER6 DNA MER2_type -1 864 -4 * 743 266 39 0 chr6 22674838 22675038 -166604516 - MER20B DNA MER1_type -513 270 63 353 329 79 27 chr6 22675194 22675594 -166603960 + L1MC/D LINE L1 5307 5725 -532 397 353 111 0 chr6 22676270 22676423 -166603131 - L2 LINE L2 -1 3271 3102 483 205 6 121 chr6 22676556 22676722 -166602832 - MLT1L LTR MaLR -59 556 410 405 245 0 0 chr6 22676829 22676931 -166602623 - L1MC4 LINE L1 -7 8035 7934 194 174 22 0 chr6 22677130 22677176 -166602378 + CT-rich Low_complexity Low_complexity 2 48 0 944 201 0 0 chr6 22677383 22677552 -166602002 - FAM SINE Alu -2 173 5 4048 198 71 145 chr6 22677621 22679619 -166599935 - L1MC4a LINE L1 -1 7807 5959 535 151 122 22 chr6 22679627 22679766 -166599788 - L1MC4a LINE L1 -719 7089 6937 1566 258 78 13 chr6 22679804 22680409 -166599145 - L1MC4a LINE L1 -1852 5956 5313 245 272 76 0 chr6 22680647 22680739 -166598815 - L1MC4a LINE L1 -1131 5015 4917 879 218 0 0 chr6 22680797 22680962 -166598592 - FAM SINE Alu -9 166 2 247 273 67 13 chr6 22680970 22681120 -166598434 - L1MC4a LINE L1 -1226 4920 4763 305 43 43 0 chr6 22681185 22681231 -166598323 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 805 185 11 0 chr6 22681231 22681409 -166598145 + CT-rich Low_complexity Low_complexity 1 180 0 1937 144 23 10 chr6 22681409 22681715 -166597839 - AluSx SINE Alu -2 310 1 2285 99 0 0 chr6 22681843 22682137 -166597417 - AluSx SINE Alu -18 294 1 26 0 0 0 chr6 22682139 22682165 -166597389 + AT_rich Low_complexity Low_complexity 1 26 0 1666 178 33 21 chr6 22682296 22682613 -166596941 + MER2 DNA MER2_type 1 324 -21 2282 117 19 27 chr6 22682613 22682980 -166596574 + THE1B LTR MaLR 1 364 0 1666 178 33 21 chr6 22682980 22682993 -166596561 + MER2 DNA MER2_type 324 335 -10 496 297 57 64 chr6 22683093 22683498 -166596056 - L1MC4a LINE L1 -1788 4358 3952 2546 134 45 14 chr6 22683498 22683944 -166595610 - L1MA5 LINE L1 0 6300 5841 496 297 57 64 chr6 22683944 22684529 -166595025 - L1MC4a LINE L1 -2194 3952 3375 6319 139 67 13 chr6 22684532 22685447 -166594107 + Tigger3b DNA MER2_type 1 994 -2034 2253 101 3 0 chr6 22685447 22685784 -166593770 + AluY SINE Alu 1 311 0 6319 139 67 13 chr6 22685784 22686036 -166593518 + Tigger3b DNA MER2_type 994 1231 0 607 250 199 56 chr6 22686085 22686131 -166593423 - L1MC4a LINE L1 -2974 3172 3134 2032 130 3 0 chr6 22686131 22686430 -166593124 - AluSx SINE Alu -12 300 1 607 250 199 56 chr6 22686430 22686484 -166593070 - L1MC4a LINE L1 -3012 3134 3089 1960 134 10 0 chr6 22686484 22686775 -166592779 - AluSq SINE Alu -18 295 2 607 250 199 56 chr6 22686775 22687121 -166592433 - L1MC4a LINE L1 -3057 3089 2661 796 154 44 34 chr6 22687565 22687763 -166591791 + MER6 DNA MER2_type -65 865 0 31 0 0 0 chr6 22687805 22687836 -166591718 + AT_rich Low_complexity Low_complexity 1 31 0 1457 178 6 60 chr6 22687961 22688275 -166591279 - AluJo SINE Alu -13 299 3 528 302 118 30 chr6 22688513 22688986 -166590568 - HAL1b LINE L1 -597 751 237 26 30 0 0 chr6 22689011 22689044 -166590510 + AT_rich Low_complexity Low_complexity 1 33 0 1968 151 3 7 chr6 22689121 22689425 -166590129 - AluSx SINE Alu -7 305 3 23 33 0 0 chr6 22689440 22689470 -166590084 + AT_rich Low_complexity Low_complexity 1 30 0 202 118 0 29 chr6 22689539 22689573 -166589981 + L3b LINE CR1 1369 1401 -182 182 262 49 16 chr6 22690492 22690553 -166589001 - L2 LINE L2 -13 3300 3238 272 301 27 33 chr6 22690585 22690768 -166588786 + LTR41 LTR ERVL 1 182 -591 2007 175 11 11 chr6 22690877 22691242 -166588312 - MLT1A1 LTR MaLR 0 365 1 1896 141 171 11 chr6 22691393 22691762 -166587792 - MSTA LTR MaLR 0 428 1 182 353 29 0 chr6 22691822 22691890 -166587664 + L2 LINE L2 3095 3164 -108 1026 170 12 0 chr6 22692013 22692184 -166587370 - FAM SINE Alu 0 175 3 258 328 67 37 chr6 22692230 22692364 -166587190 - MIR3 SINE MIR -49 159 22 5869 185 34 82 chr6 22692603 22693220 -166586334 - L1MC1 LINE L1 0 6613 5968 2131 132 0 0 chr6 22693220 22693516 -166586038 + AluSx SINE Alu 1 296 -16 5869 185 34 82 chr6 22693516 22694777 -166584777 - L1MC1 LINE L1 -645 5968 4647 852 233 0 12 chr6 22694777 22694949 -166584605 - AluJo SINE Alu -142 170 1 5869 185 34 82 chr6 22694949 22695282 -166584272 - L1MC1 LINE L1 -1966 4647 4299 3249 112 85 0 chr6 22695282 22695765 -166583789 + MER1A DNA MER1_type 4 527 0 5869 185 34 82 chr6 22695765 22696510 -166583044 - L1MC1 LINE L1 -2314 4299 3651 * 8161 169 83 34 chr6 22696507 22696602 -166582952 - L1MC1 LINE L1 -4458 1968 1879 1561 169 67 0 chr6 22696602 22696886 -166582668 - AluJb SINE Alu -9 303 1 8161 169 83 34 chr6 22696886 22698649 -166580905 - L1MC1 LINE L1 -4547 1879 20 369 295 48 80 chr6 22699253 22699731 -166579823 - L1ME LINE L1 -299 5822 5360 311 195 27 60 chr6 22700900 22701049 -166578505 + Charlie7 DNA MER1_type 2429 2572 -40 2494 67 0 13 chr6 22701905 22702218 -166577336 + AluY SINE Alu 1 309 -2 1252 147 0 206 chr6 22702936 22703103 -166576451 - AluSx SINE Alu -15 297 97 453 36 0 0 chr6 22703103 22703158 -166576396 + (TG)n Simple_repeat Simple_repeat 2 56 0 1252 147 0 206 chr6 22703158 22703234 -166576320 - AluSx SINE Alu -215 97 154 339 25 0 0 chr6 22703234 22703274 -166576280 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1252 147 0 206 chr6 22703274 22703403 -166576151 - AluSx SINE Alu -157 155 1 1568 182 173 3 chr6 22703787 22704156 -166575398 + MSTB1 LTR MaLR 1 432 0 1308 156 3 67 chr6 22704798 22705081 -166574473 - L1MB3 LINE L1 0 6183 5919 24 53 0 0 chr6 22705667 22705705 -166573849 + AT_rich Low_complexity Low_complexity 1 38 0 2050 192 63 11 chr6 22707298 22707756 -166571798 - L1MC3 LINE L1 -15 7770 7289 1365 92 0 0 chr6 22709268 22709442 -166570112 + AluSp SINE Alu 136 309 -4 459 256 139 37 chr6 22710352 22710567 -166568987 + MER102a DNA MER1_type 93 329 -1 4047 124 50 32 chr6 22711184 22711940 -166567614 - LTR1 LTR ERV1 0 785 16 185 348 0 14 chr6 22711975 22712044 -166567510 + L2 LINE L2 417 484 -2830 1042 242 0 5 chr6 22712258 22712481 -166567073 + MER58A DNA MER1_type 3 224 0 313 258 161 0 chr6 22713094 22713218 -166566336 - L2 LINE L2 -5 3308 3165 1091 279 141 18 chr6 22713249 22713640 -166565914 - L2 LINE L2 -42 3271 2833 253 268 0 0 chr6 22716612 22716668 -166562886 + MER94 DNA DNA 3 58 -76 274 241 0 0 chr6 22716811 22716869 -166562685 + L2 LINE L2 3256 3313 0 454 278 56 0 chr6 22718066 22718192 -166561362 + L2 LINE L2 3161 3293 -20 1043 159 169 0 chr6 22718376 22718577 -166560977 + MER46A DNA MER2_type 2 236 0 414 284 66 27 chr6 22718629 22718812 -166560742 - MLT1L LTR MaLR -2 613 424 1629 151 0 0 chr6 22719374 22719619 -166559935 + Tigger3(Golem) DNA MER2_type 2784 3028 -1 213 386 105 18 chr6 22719919 22720033 -166559521 + MIR SINE MIR 20 143 -65 542 333 122 17 chr6 22720636 22721054 -166558500 - MLT1L LTR MaLR -6 609 148 239 324 0 14 chr6 22721353 22721424 -166558130 - L2 LINE L2 -218 3054 2985 270 167 0 0 chr6 22721565 22721625 -166557929 + A-rich Low_complexity Low_complexity 4 63 0 2093 104 14 3 chr6 22721713 22722000 -166557554 - AluSg SINE Alu -20 290 1 38 0 0 0 chr6 22723322 22723360 -166556194 + AT_rich Low_complexity Low_complexity 1 38 0 1469 159 0 4 chr6 22723439 22723665 -166555889 - AluJo SINE Alu -2 310 86 2951 200 52 42 chr6 22723993 22724809 -166554745 - L1MA9 LINE L1 -25 6287 5464 21 36 0 0 chr6 22724822 22724850 -166554704 + AT_rich Low_complexity Low_complexity 1 28 0 403 345 87 31 chr6 22725132 22725454 -166554100 - L2 LINE L2 -7 3306 2967 2148 256 119 62 chr6 22725472 22726683 -166552871 - L2 LINE L2 -690 2624 1345 27 0 0 0 chr6 22726684 22726711 -166552843 + AT_rich Low_complexity Low_complexity 1 27 0 28 29 0 0 chr6 22727862 22727897 -166551657 + AT_rich Low_complexity Low_complexity 1 35 0 414 342 58 21 chr6 22727996 22728186 -166551368 - MIR3 SINE MIR -9 199 3 25 51 0 0 chr6 22728653 22728692 -166550862 + AT_rich Low_complexity Low_complexity 1 39 0 251 265 49 68 chr6 22728737 22728899 -166550655 - L1ME3A LINE L1 -50 6120 5962 366 211 38 45 chr6 22728987 22729120 -166550434 - L1MC5 LINE L1 -431 7530 7399 3123 149 108 68 chr6 22729342 22729594 -166549960 - L1MA4A LINE L1 -24 6279 6039 1789 125 34 0 chr6 22729594 22729858 -166549696 - AluSq SINE Alu -40 273 1 3123 149 108 68 chr6 22729858 22730022 -166549532 - L1MA4A LINE L1 -264 6039 5883 3329 63 0 0 chr6 22730022 22730448 -166549106 - L1PA5 LINE L1 0 6154 5729 3123 149 108 68 chr6 22730448 22730786 -166548768 - L1MA4A LINE L1 -420 5883 5493 2352 112 0 0 chr6 22730786 22731091 -166548463 - AluSg SINE Alu -5 305 1 425 245 159 0 chr6 22731634 22731785 -166547769 + LTR28 LTR ERV1 4 178 -842 370 198 12 0 chr6 22731801 22731882 -166547672 + LTR1 LTR ERV1 109 190 -595 * 2020 178 137 24 chr6 22731851 22732311 -166547243 + LTR28 LTR ERV1 308 819 -201 1657 177 38 0 chr6 22732310 22732626 -166546928 + LTR28 LTR ERV1 693 1020 0 * 1989 145 0 16 chr6 22732994 22733298 -166546256 - AluSx SINE Alu -13 299 1 1213 201 76 8 chr6 22733495 22733778 -166545776 + AluSx SINE Alu 1 301 0 2364 101 3 0 chr6 22734563 22734871 -166544683 + AluSp SINE Alu 1 309 -4 1798 186 58 41 chr6 22734878 22735593 -166543961 + MER4E LTR ERV1 1 779 0 3683 150 46 11 chr6 22735660 22736308 -166543246 - LTR51 LTR ERV1 0 671 1 579 246 83 76 chr6 22736308 22736856 -166542698 - MER34C LTR ERV1 -6 536 2 399 333 0 0 chr6 22737684 22737792 -166541762 + MIR3 SINE MIR 87 194 -14 216 135 0 0 chr6 22737907 22737944 -166541610 + (T)n Simple_repeat Simple_repeat 1 37 0 337 269 13 0 chr6 22738078 22738156 -166541398 + L3 LINE CR1 1426 1504 -73 939 233 83 0 chr6 22738621 22738849 -166540705 - MIR SINE MIR -14 248 2 245 330 20 30 chr6 22738952 22739052 -166540502 - L2 LINE L2 -32 3281 3183 1340 167 84 43 chr6 22739098 22739397 -166540157 + AluSx SINE Alu 1 311 -1 475 97 29 29 chr6 22739444 22739547 -166540007 + GA-rich Low_complexity Low_complexity 2 104 0 1248 293 101 38 chr6 22739547 22739623 -166539931 - L2 LINE L2 -124 3189 3119 2383 98 3 0 chr6 22739623 22739929 -166539625 + AluSx SINE Alu 1 307 -5 1248 293 101 38 chr6 22739929 22740588 -166538966 - L2 LINE L2 -194 3119 2403 25 31 0 0 chr6 22741085 22741117 -166538437 + AT_rich Low_complexity Low_complexity 1 32 0 882 196 0 0 chr6 22741117 22741270 -166538284 - FRAM SINE Alu -13 153 1 186 189 0 0 chr6 22741286 22741323 -166538231 + T-rich Low_complexity Low_complexity 1 37 0 2080 124 3 34 chr6 22741325 22741647 -166537907 - AluSx SINE Alu 0 312 1 1352 152 16 4 chr6 22742471 22742714 -166536840 - MER101 LTR ERV1 0 474 229 403 315 11 67 chr6 22742746 22742924 -166536630 + MIR3 SINE MIR 36 203 -5 2282 128 0 0 chr6 22742927 22743239 -166536315 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 22743384 22743415 -166536139 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 22743770 22743800 -166535754 + AT_rich Low_complexity Low_complexity 1 30 0 456 168 11 42 chr6 22743827 22743922 -166535632 - AluJ/FLAM SINE Alu -215 97 6 2250 105 7 7 chr6 22743924 22744230 -166535324 - AluSx SINE Alu -6 306 1 420 57 0 71 chr6 22744252 22744305 -166535249 - L1PA16 LINE L1 -9 6157 6109 2171 120 62 11 chr6 22744305 22744662 -166534892 - THE1C LTR MaLR 0 375 1 420 57 0 71 chr6 22744662 22744678 -166534876 - L1PA16 LINE L1 -57 6109 6093 904 181 62 14 chr6 22745220 22745430 -166534124 + MER58A DNA MER1_type 4 223 -1 2313 71 0 7 chr6 22745549 22745846 -166533708 + AluY SINE Alu 1 295 -16 1977 133 0 32 chr6 22747546 22747855 -166531699 - AluJo SINE Alu -9 303 5 287 299 13 0 chr6 22749269 22749346 -166530208 + L2 LINE L2 3235 3312 -1 5588 121 9 4 chr6 22750379 22751355 -166528199 - L1PA14 LINE L1 0 6161 5170 21 57 0 0 chr6 22751737 22751772 -166527782 + AT_rich Low_complexity Low_complexity 1 35 0 414 215 0 139 chr6 22753421 22753565 -166525989 - L2 LINE L2 0 3313 3190 341 227 0 0 chr6 22754680 22754746 -166524808 + MIR SINE MIR 3 68 -194 885 128 47 14 chr6 22754757 22754905 -166524649 + MER30 DNA MER1_type 78 230 0 4432 160 44 28 chr6 22755804 22757105 -166522449 - L1MA9 LINE L1 -38 6274 4953 738 220 28 0 chr6 22757093 22757270 -166522284 + L1 LINE L1 4576 4757 -1389 * 1265 173 42 137 chr6 22757275 22757386 -166522168 + AluJo SINE Alu 9 129 -183 228 111 0 0 chr6 22757386 22757422 -166522132 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1265 173 42 137 chr6 22757422 22757646 -166521908 + AluJo SINE Alu 129 312 0 855 112 25 87 chr6 22757653 22757849 -166521705 + L1 LINE L1 4747 4930 -1216 372 164 0 0 chr6 22758005 22758072 -166521482 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 297 280 60 99 chr6 22758266 22758498 -166521056 + L2 LINE L2 2738 2960 -354 2446 90 0 0 chr6 22758596 22758907 -166520647 - AluY SINE Alu 0 311 1 913 158 0 20 chr6 22758920 22759066 -166520488 - FLAM_C SINE Alu 0 143 1 183 317 59 0 chr6 22759077 22759178 -166520376 + L2 LINE L2 3119 3225 -88 349 206 14 0 chr6 22759179 22759252 -166520302 - AluJo SINE Alu -6 296 223 857 139 42 7 chr6 22759252 22759396 -166520158 - AluJo SINE Alu -128 184 36 314 258 65 0 chr6 22759396 22759489 -166520065 + L2 LINE L2 3215 3313 0 322 297 11 97 chr6 22759690 22759742 -166519812 + MIR SINE MIR 103 158 -104 2386 79 33 0 chr6 22759742 22760045 -166519509 + AluSq SINE Alu 1 313 0 322 297 11 97 chr6 22760045 22760167 -166519387 + MIR SINE MIR 158 262 0 255 235 0 0 chr6 22760343 22760394 -166519160 - MLT1B LTR MaLR 0 390 340 717 194 167 6 chr6 22760414 22760594 -166518960 - MER3 DNA MER1_type 0 209 1 186 143 0 0 chr6 22761546 22761581 -166517973 + (CA)n Simple_repeat Simple_repeat 1 35 0 1395 198 128 12 chr6 22761589 22762019 -166517535 - L1MC4 LINE L1 0 8042 7563 3577 179 64 34 chr6 22762059 22762394 -166517160 - L1MB7 LINE L1 -7 6177 5854 1540 174 92 0 chr6 22762394 22762710 -166516844 + MER7A DNA MER2_type 4 346 0 3577 179 64 34 chr6 22762710 22763014 -166516540 - L1MB7 LINE L1 -330 5854 5561 312 27 0 0 chr6 22763014 22763051 -166516503 + (TG)n Simple_repeat Simple_repeat 2 38 0 1731 183 0 11 chr6 22763058 22763343 -166516211 - AluJo SINE Alu -30 282 1 3577 179 64 34 chr6 22763343 22763399 -166516155 - L1MB7 LINE L1 -628 5556 5503 832 168 69 0 chr6 22763399 22763572 -166515982 - L1MB3 LINE L1 0 6183 5999 3577 179 64 34 chr6 22763572 22763997 -166515557 - L1MB7 LINE L1 -681 5503 5018 202 367 102 49 chr6 22764206 22765582 -166513972 + L2 LINE L2 589 2037 -1277 1220 39 0 7 chr6 22765865 22766020 -166513534 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 1862 139 7 11 chr6 22766022 22766295 -166513259 - AluSx SINE Alu -40 272 1 193 329 0 29 chr6 22767138 22767208 -166512346 + L2 LINE L2 3226 3293 -20 537 241 167 0 chr6 22767922 22767953 -166511601 + AluJo SINE Alu 9 33 -279 225 94 0 0 chr6 22767953 22767985 -166511569 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 537 241 167 0 chr6 22767985 22768115 -166511439 + AluJo SINE Alu 33 197 -115 2425 85 7 0 chr6 22818683 22819011 -166460543 - AluSc SINE Alu 0 330 1 1227 231 21 3 chr6 22819564 22819846 -166459708 - MLT1A1 LTR MaLR 0 365 79 243 217 69 74 chr6 22820268 22820443 -166459111 + L1ME4a LINE L1 5932 6105 -16 30 93 0 0 chr6 22820454 22820540 -166459014 + AT_rich Low_complexity Low_complexity 1 86 0 27 62 0 37 chr6 22821356 22821437 -166458117 + AT_rich Low_complexity Low_complexity 1 78 0 232 382 24 16 chr6 22821502 22821625 -166457929 - MIR3 SINE MIR -13 195 72 2229 86 10 7 chr6 22821673 22821976 -166457578 - AluSc SINE Alu -5 304 1 2225 113 3 7 chr6 22822252 22822562 -166456992 + AluSq SINE Alu 1 309 -4 2207 221 76 39 chr6 22823161 22823865 -166455689 - L1MC4 LINE L1 -5 8037 5612 1199 196 93 36 chr6 22823867 22824199 -166455355 + MLT2D LTR ERVL 1 351 -63 229 114 0 0 chr6 22824253 22824288 -166455266 + MLT2D LTR ERVL 363 397 0 247 229 0 0 chr6 22824288 22824336 -166455218 + L1M4 LINE L1 4062 4109 -2037 663 233 68 79 chr6 22824911 22825203 -166454351 - L2 LINE L2 0 3313 3025 2273 91 0 3 chr6 22825228 22825526 -166454028 - AluY SINE Alu -14 297 1 1626 184 0 34 chr6 22825531 22825825 -166453729 - AluJo SINE Alu -20 292 9 1586 92 61 0 chr6 22826133 22826361 -166453193 - L1PB1 LINE L1 -1 6150 5909 816 209 0 0 chr6 22826396 22826554 -166453000 + MLT1A1 LTR MaLR 1 158 -207 1080 165 0 12 chr6 22826554 22826724 -166452830 + AluSc SINE Alu 112 279 -30 980 184 32 37 chr6 22826730 22826948 -166452606 + MLT1A1 LTR MaLR 144 360 -5 1464 78 289 14 chr6 22827994 22828278 -166451276 - L1PA8 LINE L1 0 6172 5811 463 304 100 33 chr6 22828319 22828589 -166450965 + LTR67 LTR ERVL 3 290 -267 230 268 14 14 chr6 22828699 22828770 -166450784 + LTR67 LTR ERVL 471 541 -16 2126 108 10 3 chr6 22829762 22830059 -166449495 + AluSc SINE Alu 1 299 -10 184 327 18 0 chr6 22830063 22830118 -166449436 - MIR SINE MIR -71 137 82 356 294 64 0 chr6 22831427 22831536 -166448018 - MIR SINE MIR -59 149 34 613 164 36 79 chr6 22831738 22831815 -166447739 + MER33 DNA MER1_type 1 69 -2516 2364 70 10 13 chr6 22831815 22832117 -166447437 - AluY SINE Alu -10 301 1 613 164 36 79 chr6 22832117 22832204 -166447350 + MER33 DNA MER1_type 69 158 -166 605 202 147 16 chr6 22832224 22832353 -166447201 + FRAM SINE Alu 1 146 -30 628 170 65 0 chr6 22832372 22832525 -166447029 + MER33 DNA MER1_type 201 363 0 23 78 0 0 chr6 22832724 22832775 -166446779 + AT_rich Low_complexity Low_complexity 1 51 0 428 225 21 99 chr6 22833700 22833891 -166445663 + L2 LINE L2 3138 3313 0 2293 218 63 18 chr6 22834487 22835172 -166444382 + L1MC4a LINE L1 6646 7361 -447 2012 102 11 14 chr6 22835298 22835583 -166443971 + AluSx SINE Alu 6 289 -23 461 228 59 0 chr6 22835595 22835696 -166443858 - MIR SINE MIR -74 188 82 492 229 0 8 chr6 22836997 22837119 -166442435 - L1ME3A LINE L1 -2 6168 6048 2266 76 0 27 chr6 22837126 22837427 -166442127 + AluY SINE Alu 1 293 -18 1771 151 4 0 chr6 22837501 22837766 -166441788 - AluSx SINE Alu -2 310 45 1002 278 188 16 chr6 22837903 22838046 -166441508 - L2 LINE L2 -571 2743 2626 432 0 0 0 chr6 22838046 22838094 -166441460 + (CA)n Simple_repeat Simple_repeat 1 48 0 1002 278 188 16 chr6 22838094 22838450 -166441104 - L2 LINE L2 -688 2626 2158 10506 160 31 35 chr6 22839540 22839989 -166439565 + L1M4c LINE L1 16 466 -5918 894 138 0 8 chr6 22839989 22840119 -166439435 + FLAM_C SINE Alu 1 129 -4 10506 160 31 35 chr6 22840119 22840243 -166439311 + L1M4c LINE L1 466 589 -5795 2396 98 3 0 chr6 22840243 22840550 -166439004 + AluSp SINE Alu 1 308 -5 10506 160 31 35 chr6 22840550 22842185 -166437369 + L1M4c LINE L1 589 2215 -4169 561 116 12 0 chr6 22842187 22842273 -166437281 - Tigger5 DNA MER2_type 0 2323 2237 229 184 0 0 chr6 22842283 22842321 -166437233 - Tigger5 DNA MER2_type -2268 55 18 311 203 29 14 chr6 22842328 22842397 -166437157 - Tigger5 DNA MER2_type -6 2317 2248 675 100 157 21 chr6 22842417 22842557 -166436997 + L1M4c LINE L1 2216 2374 -4010 1038 202 6 65 chr6 22842583 22842958 -166436596 + L1MB3 LINE L1 5820 6141 -42 1440 133 24 0 chr6 22842958 22843168 -166436386 + AluJb SINE Alu 83 297 -15 954 247 77 30 chr6 22843323 22843881 -166435673 - MLT2E LTR ERVL 0 628 1 31 58 0 0 chr6 22844289 22844341 -166435213 + AT_rich Low_complexity Low_complexity 1 52 0 315 192 103 0 chr6 22844581 22844659 -166434895 + MER53 DNA DNA 103 188 -1 1802 194 75 20 chr6 22844838 22845281 -166434273 + MLT1C LTR MaLR 1 467 0 356 325 105 53 chr6 22845293 22845521 -166434033 - MIR SINE MIR -2 260 21 266 57 0 0 chr6 22847261 22847296 -166432258 - MLT2C1 LTR ERVL 0 397 363 387 0 0 0 chr6 22847313 22847356 -166432198 + (CA)n Simple_repeat Simple_repeat 2 44 0 1291 186 137 25 chr6 22847356 22847678 -166431876 - MLT1E LTR MaLR -30 563 206 418 234 0 82 chr6 22847901 22848059 -166431495 + AluSg SINE Alu 9 153 -157 848 153 0 0 chr6 22849148 22849279 -166430275 - FLAM_C SINE Alu -2 131 1 3655 149 26 17 chr6 22849298 22849789 -166429765 + Tigger1 DNA MER2_type 1 501 -1917 1658 181 7 3 chr6 22849789 22850076 -166429478 + AluJb SINE Alu 1 288 -24 3655 149 26 17 chr6 22850076 22850274 -166429280 + Tigger1 DNA MER2_type 501 696 -1722 898 206 0 0 chr6 22850275 22850430 -166429124 + AluJb SINE Alu 134 288 -24 3481 99 23 2 chr6 22850430 22850954 -166428600 + Tigger1 DNA MER2_type 492 1026 -1392 2758 137 44 16 chr6 22850933 22851436 -166428118 + Tigger1 DNA MER2_type 1859 2375 -43 * 312 133 0 0 chr6 22852938 22852998 -166426556 + (TA)n Simple_repeat Simple_repeat 1 60 0 286 365 52 0 chr6 22854588 22854703 -166424851 - MIR3 SINE MIR -36 172 52 775 181 0 15 chr6 22854756 22854889 -166424665 - FLAM_C SINE Alu 0 133 3 21 0 0 0 chr6 22856312 22856333 -166423221 + AT_rich Low_complexity Low_complexity 1 21 0 616 277 38 50 chr6 22856714 22856805 -166422749 - MIR SINE MIR -26 236 145 2370 74 0 7 chr6 22856805 22857101 -166422453 - AluSc SINE Alu -15 294 1 616 277 38 50 chr6 22857101 22857247 -166422307 - MIR SINE MIR -117 145 2 248 255 117 32 chr6 22857767 22857861 -166421693 - L2 LINE L2 -1 3271 3170 195 289 214 38 chr6 22858352 22858511 -166421043 + MER5A DNA MER1_type 2 188 -1 243 283 183 52 chr6 22858910 22859101 -166420453 - MIR SINE MIR 0 262 47 1711 154 7 20 chr6 22860626 22860924 -166418630 + AluJb SINE Alu 6 299 -13 2102 123 14 0 chr6 22860958 22861251 -166418303 - AluSg SINE Alu -13 297 1 2014 151 0 3 chr6 22861489 22861787 -166417767 - AluSx SINE Alu -15 297 1 609 170 0 0 chr6 22861809 22861909 -166417645 - FLAM_C SINE Alu -25 118 19 2878 0 0 0 chr6 22862299 22862607 -166416947 - AluYa5 SINE Alu -3 308 1 413 315 21 13 chr6 22863055 22863134 -166416420 - L1MC4a LINE L1 -1 7807 7730 1929 151 13 10 chr6 22863134 22863445 -166416109 - AluJb SINE Alu 0 312 1 413 315 21 13 chr6 22863445 22863603 -166415951 - L1MC4a LINE L1 -78 7730 7568 378 325 8 8 chr6 22863945 22864071 -166415483 + MER5A DNA MER1_type 36 161 -28 360 164 0 0 chr6 22865010 22865077 -166414477 + (CA)n Simple_repeat Simple_repeat 2 68 0 338 269 17 42 chr6 22865558 22865677 -166413877 - L1MCa LINE L1 -4859 1681 1566 297 75 0 0 chr6 22865679 22865719 -166413835 + (A)n Simple_repeat Simple_repeat 1 40 0 266 215 93 19 chr6 22865731 22865838 -166413716 - L1MCa LINE L1 -4853 1687 1573 504 232 57 23 chr6 22865959 22866136 -166413418 - L1MCa LINE L1 -5354 1367 1185 463 229 101 9 chr6 22866166 22866275 -166413279 + FLAM_A SINE Alu 1 119 -14 880 296 52 16 chr6 22866313 22866698 -166412856 - L1MCa LINE L1 -5962 759 361 2081 106 14 0 chr6 22866712 22866995 -166412559 - AluSx SINE Alu -25 287 1 282 56 0 0 chr6 22867411 22867447 -166412107 + (CA)n Simple_repeat Simple_repeat 1 36 0 1289 163 9 13 chr6 22867533 22867766 -166411788 + MER46A DNA MER2_type 5 236 0 597 293 95 36 chr6 22868574 22868796 -166410758 + L2 LINE L2 2857 3091 -222 380 224 0 0 chr6 22868804 22868880 -166410674 - AluJ/FLAM SINE Alu -226 76 1 239 162 0 0 chr6 22868889 22868926 -166410628 + Tigger5 DNA MER2_type 2264 2300 -23 484 273 163 29 chr6 22868931 22868944 -166410610 + L2 LINE L2 3073 3083 -230 2301 86 10 3 chr6 22868944 22869246 -166410308 - AluSp SINE Alu -9 304 1 484 273 163 29 chr6 22869246 22869441 -166410113 + L2 LINE L2 3083 3309 -4 261 0 0 0 chr6 22869442 22869471 -166410083 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2367 98 10 65 chr6 22869576 22869658 -166409896 - MER47A DNA MER2_type -1957 366 281 2039 170 0 0 chr6 22869658 22869970 -166409584 + AluJb SINE Alu 1 312 0 2367 98 10 65 chr6 22869970 22870274 -166409280 - MER47A DNA MER2_type -2042 281 1 1841 173 3 13 chr6 22870360 22870667 -166408887 - AluJo SINE Alu -8 304 1 243 215 0 0 chr6 22871762 22871827 -166407727 + (TG)n Simple_repeat Simple_repeat 2 66 0 284 353 127 46 chr6 22871913 22872151 -166407403 - L2 LINE L2 -4 3268 2996 1816 160 21 0 chr6 22872151 22872433 -166407121 - AluSx SINE Alu -24 288 1 284 353 127 46 chr6 22872433 22872517 -166407037 - L2 LINE L2 -276 2996 2920 1792 77 5 0 chr6 22872552 22872772 -166406782 - AluSp SINE Alu -91 222 2 2160 112 10 16 chr6 22873033 22873347 -166406207 + AluSx SINE Alu 1 312 0 2656 55 0 0 chr6 22874296 22874607 -166404947 - AluY SINE Alu 0 311 1 23 0 0 0 chr6 22875748 22875771 -166403783 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 22876712 22876734 -166402820 + AT_rich Low_complexity Low_complexity 1 22 0 333 253 11 0 chr6 22878457 22878548 -166401006 + MER65A LTR ERV1 341 432 -13 198 0 0 0 chr6 22879358 22879380 -166400174 + (A)n Simple_repeat Simple_repeat 1 22 0 2202 120 7 0 chr6 22880040 22880339 -166399215 + AluSx SINE Alu 3 303 -9 203 278 0 83 chr6 22881418 22881490 -166398064 + L2 LINE L2 3202 3267 -5 257 209 124 48 chr6 22882363 22882468 -166397086 - MIR SINE MIR -13 249 137 910 152 93 0 chr6 22882480 22882631 -166396923 - FAM SINE Alu -10 165 1 200 293 108 95 chr6 22882764 22882996 -166396558 + L2 LINE L2 3032 3266 -6 3006 121 4 22 chr6 22883475 22883836 -166395718 + L1PA13 LINE L1 5678 6029 -134 2577 68 0 0 chr6 22883836 22884147 -166395407 + AluY SINE Alu 1 311 0 3006 121 4 22 chr6 22884147 22884273 -166395281 + L1PA13 LINE L1 6029 6156 -7 5374 100 36 8 chr6 22886295 22887158 -166392396 + L1PA13 LINE L1 5276 6162 -1 1421 201 32 18 chr6 22887379 22887657 -166391897 + AluJo SINE Alu 1 282 -30 255 125 0 0 chr6 22887663 22887703 -166391851 + (GGGGA)n Simple_repeat Simple_repeat 5 44 0 263 246 82 0 chr6 22887705 22887766 -166391788 + AluJ/FRAM SINE Alu 217 282 -20 234 0 0 0 chr6 22887768 22887794 -166391760 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 1337 202 48 10 chr6 22889288 22889661 -166389893 - MLT1C LTR MaLR 0 467 1 3789 214 113 44 chr6 22889661 22890505 -166389049 - L1M4c LINE L1 -4098 2548 1764 1947 174 0 0 chr6 22890505 22890809 -166388745 - AluJb SINE Alu -8 304 1 3789 214 113 44 chr6 22890809 22891442 -166388112 - L1M4c LINE L1 -4882 1764 969 2367 143 28 23 chr6 22891467 22891894 -166387660 - Tigger2a DNA MER2_type -5 429 1 3713 227 15 40 chr6 22891894 22892843 -166386711 - L1M4c LINE L1 -5610 932 8 2131 109 3 3 chr6 22893182 22893499 -166386055 - AluSg SINE Alu 0 310 1 976 68 0 0 chr6 22895325 22895443 -166384111 + AluSp/q SINE Alu 179 296 -17 349 263 0 0 chr6 22895500 22895576 -166383978 + MIR SINE MIR 187 262 0 1963 151 0 0 chr6 22895957 22896255 -166383299 - AluJb SINE Alu -14 298 1 533 274 103 45 chr6 22896391 22896794 -166382760 - MLT1J LTR MaLR -41 470 1 1875 177 0 0 chr6 22897047 22897357 -166382197 + AluJo SINE Alu 1 310 -2 1945 162 32 0 chr6 22898226 22898603 -166380951 - L1MC1 LINE L1 -174 6159 5771 1853 220 63 18 chr6 22898864 22899418 -166380136 - L1ME3 LINE L1 -2 6160 5582 467 327 0 36 chr6 22899755 22899923 -166379631 + MIR3 SINE MIR 40 201 -7 34 83 0 9 chr6 22899923 22899941 -166379613 + AT_rich Low_complexity Low_complexity 1 18 -89 1792 168 0 17 chr6 22899941 22900232 -166379322 + AluJo SINE Alu 1 286 -26 34 83 0 9 chr6 22900232 22900321 -166379233 + AT_rich Low_complexity Low_complexity 18 107 0 29 47 0 0 chr6 22902071 22902114 -166377440 + AT_rich Low_complexity Low_complexity 1 43 0 2197 124 3 0 chr6 22902123 22902421 -166377133 - AluSx SINE Alu -13 299 1 336 186 12 0 chr6 22902421 22902507 -166377047 - Charlie2 DNA MER1_type -354 2508 2422 216 158 0 0 chr6 22902539 22902596 -166376958 + (TA)n Simple_repeat Simple_repeat 1 57 0 2423 46 0 0 chr6 22902598 22902878 -166376676 - AluY SINE Alu -22 289 10 260 131 98 0 chr6 22902904 22902965 -166376589 - Charlie2 DNA MER1_type -489 2373 2307 2220 98 7 3 chr6 22903910 22904206 -166375348 + AluSg SINE Alu 1 297 -13 1591 184 30 0 chr6 22904399 22904706 -166374848 - AluJb SINE Alu 0 318 4 225 250 0 0 chr6 22904901 22904973 -166374581 + A-rich Low_complexity Low_complexity 1 72 0 23 0 0 0 chr6 22905592 22905615 -166373939 + AT_rich Low_complexity Low_complexity 1 23 0 2226 98 0 0 chr6 22905789 22906076 -166373478 + AluSx SINE Alu 1 287 -25 192 263 70 0 chr6 22906429 22906486 -166373068 + MIR SINE MIR 172 232 -30 1328 204 171 67 chr6 22906659 22907330 -166372224 - LTR1B LTR ERV1 -85 741 1 704 197 13 4 chr6 22907441 22907619 -166371935 - L1MA6 LINE L1 -2 6295 6120 2280 107 0 3 chr6 22907631 22907941 -166371613 - AluSq SINE Alu 0 313 5 882 158 0 102 chr6 22907988 22908165 -166371389 + FRAM SINE Alu 1 158 -18 22 0 0 0 chr6 22908991 22909013 -166370541 + AT_rich Low_complexity Low_complexity 1 22 0 1399 174 114 23 chr6 22909198 22909583 -166369971 - MER95 LTR ERV -10 421 2 2089 122 27 7 chr6 22909613 22909907 -166369647 - AluSx SINE Alu -12 300 1 253 279 20 102 chr6 22910042 22910131 -166369423 + MIR SINE MIR 13 87 -175 1619 204 3 20 chr6 22910131 22910435 -166369119 - AluJb SINE Alu -13 299 1 253 279 20 102 chr6 22910435 22910492 -166369062 + MIR SINE MIR 87 147 -115 333 0 0 0 chr6 22910533 22910570 -166368984 + (TG)n Simple_repeat Simple_repeat 2 38 0 1150 162 40 5 chr6 22910570 22910792 -166368762 - MLT2B2 LTR ERVL -285 230 1 756 241 122 65 chr6 22910792 22910991 -166368563 - MLT1I LTR MaLR -7 402 179 2183 110 0 31 chr6 22910991 22911308 -166368246 - AluSc SINE Alu -2 307 1 756 241 122 65 chr6 22911308 22911401 -166368153 - MLT1I LTR MaLR -230 179 93 228 225 0 56 chr6 22912152 22912241 -166367313 - L1ME1 LINE L1 -25 6141 6058 23 0 0 0 chr6 22912288 22912311 -166367243 + AT_rich Low_complexity Low_complexity 1 23 0 2301 122 0 0 chr6 22912311 22912622 -166366932 + AluSx SINE Alu 1 311 -1 1141 137 113 101 chr6 22913489 22913778 -166365776 + L1MB3 LINE L1 5838 6122 -58 2237 115 3 0 chr6 22913778 22914082 -166365472 + AluSx SINE Alu 3 307 -5 698 199 0 15 chr6 22914086 22914217 -166365337 + FLAM_A SINE Alu 2 130 -3 1141 137 113 101 chr6 22914217 22914259 -166365295 + L1MB3 LINE L1 6124 6178 -2 1249 169 55 128 chr6 22914374 22914717 -166364837 - AluYb8 SINE Alu 0 318 1 1873 173 0 13 chr6 22914970 22915277 -166364277 + AluJb SINE Alu 5 307 -5 1439 149 39 57 chr6 22915281 22915616 -166363938 + L1MB8 LINE L1 5834 6162 -16 383 98 148 0 chr6 22915858 22915919 -166363635 - U6 snRNA snRNA -37 70 1 2067 129 23 0 chr6 22916547 22916850 -166362704 + AluSx SINE Alu 1 310 -2 13109 121 74 10 chr6 22916940 22919188 -166360366 - Tigger1 DNA MER2_type 0 2418 26 304 218 161 65 chr6 22920269 22920393 -166359161 - MIR SINE MIR -16 246 111 2395 94 3 0 chr6 22920679 22920988 -166358566 + AluSx SINE Alu 1 310 -2 281 200 27 0 chr6 22921566 22921641 -166357913 + CT-rich Low_complexity Low_complexity 2 78 0 246 62 0 0 chr6 22922013 22922045 -166357509 + (A)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr6 22925001 22925025 -166354529 + AT_rich Low_complexity Low_complexity 1 24 0 1897 156 3 3 chr6 22925055 22925350 -166354204 + AluSx SINE Alu 1 295 -17 948 118 16 0 chr6 22925573 22925700 -166353854 + AluSx SINE Alu 1 129 -183 234 222 0 0 chr6 22925700 22925754 -166353800 + (TA)n Simple_repeat Simple_repeat 1 54 0 1400 109 0 0 chr6 22925759 22925943 -166353611 + AluSx SINE Alu 127 310 -2 1648 166 35 31 chr6 22927032 22927321 -166352233 + AluJo SINE Alu 1 290 -22 188 83 0 28 chr6 22928632 22928668 -166350886 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1298 150 28 156 chr6 22929506 22929859 -166349695 + AluYa5 SINE Alu 1 308 -3 403 289 31 8 chr6 22930046 22930240 -166349314 - MIR SINE MIR -5 257 2 370 368 64 23 chr6 22930418 22930858 -166348696 - L2 LINE L2 -901 2413 1956 193 214 0 0 chr6 22931008 22931050 -166348504 + L2 LINE L2 3230 3271 -42 721 233 26 69 chr6 22931352 22931584 -166347970 - MIR SINE MIR -9 253 32 3674 146 33 8 chr6 22931812 22932483 -166347071 + L1MA4 LINE L1 5602 6289 -11 2423 74 3 0 chr6 22933151 22933446 -166346108 + AluY SINE Alu 1 296 -15 2253 89 0 20 chr6 22933446 22933749 -166345805 + AluY SINE Alu 1 297 -14 1343 234 163 18 chr6 22934248 22934689 -166344865 - MLT1J LTR MaLR -6 505 1 223 93 47 0 chr6 22935632 22935675 -166343879 + CT-rich Low_complexity Low_complexity 4 48 0 613 142 75 8 chr6 22935736 22935856 -166343698 - L1MA3 LINE L1 -6 6299 6172 1166 274 87 56 chr6 22936162 22936647 -166342907 - MLT1J LTR MaLR -11 500 1 2276 88 3 29 chr6 22936671 22936978 -166342576 + AluY SINE Alu 1 299 -12 2140 104 0 64 chr6 22937994 22938320 -166341234 + AluSx SINE Alu 1 305 -7 399 249 258 65 chr6 22938438 22938479 -166341075 - MIR SINE MIR -1 261 229 267 103 0 0 chr6 22938479 22938518 -166341036 + (TA)n Simple_repeat Simple_repeat 1 39 0 399 249 258 65 chr6 22938518 22938693 -166340861 - MIR SINE MIR -33 229 3 573 15 0 0 chr6 22938956 22939022 -166340532 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 191 125 175 0 chr6 22939579 22939619 -166339935 + L2 LINE L2 3221 3267 -5 34 42 0 0 chr6 22940186 22940234 -166339320 + AT_rich Low_complexity Low_complexity 1 48 0 1902 151 3 0 chr6 22941313 22941597 -166337957 - AluSx SINE Alu -26 286 2 2247 99 3 0 chr6 22942802 22943116 -166336438 - AluSp SINE Alu 0 313 1 736 177 0 57 chr6 22943126 22943267 -166336287 - FLAM_A SINE Alu 0 133 1 458 281 78 54 chr6 22943443 22943685 -166335869 + MIR SINE MIR 3 250 -12 903 144 0 0 chr6 22946715 22946847 -166332707 + FLAM_C SINE Alu 1 132 -1 189 74 0 0 chr6 22947741 22947768 -166331786 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 251 233 17 0 chr6 22948392 22948452 -166331102 - L1ME LINE L1 -387 5775 5715 21 36 0 0 chr6 22948511 22948539 -166331015 + AT_rich Low_complexity Low_complexity 1 28 0 279 298 26 53 chr6 22948747 22948861 -166330693 + MIR3 SINE MIR 92 202 -6 1323 239 123 6 chr6 22949809 22950160 -166329394 + MSTD LTR MaLR 1 392 -4 190 320 40 13 chr6 22950506 22950581 -166328973 + L2 LINE L2 2603 2679 -635 360 267 125 62 chr6 22950583 22950684 -166328870 - MIR SINE MIR 0 262 144 1609 174 49 54 chr6 22950684 22951074 -166328480 - MLT1B LTR MaLR -2 388 1 360 267 125 62 chr6 22951074 22951148 -166328406 - MIR SINE MIR -118 144 76 204 343 41 46 chr6 22951150 22951369 -166328185 + L2 LINE L2 2287 2504 -810 1707 160 7 42 chr6 22951392 22951699 -166327855 - AluJb SINE Alu -6 306 11 5963 101 19 12 chr6 22951821 22952856 -166326698 + L1PA8 LINE L1 5132 6172 0 2238 211 42 39 chr6 22953289 22953911 -166325643 - MLT1E3 LTR MaLR 0 624 1 504 216 17 9 chr6 22954239 22954355 -166325199 - MER94 DNA DNA -13 121 5 666 128 147 0 chr6 22954614 22954723 -166324831 - AluJb SINE Alu -187 125 1 258 313 42 42 chr6 22954788 22954890 -166324664 + MIR SINE MIR 97 201 -61 1940 160 48 3 chr6 22954890 22955222 -166324332 + MER7A DNA MER2_type 2 346 0 258 313 42 42 chr6 22955222 22955285 -166324269 + MIR SINE MIR 200 262 0 243 0 0 0 chr6 22956322 22956349 -166323205 + (CAG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr6 22956775 22956811 -166322743 + AT_rich Low_complexity Low_complexity 1 36 0 6060 198 64 14 chr6 22957881 22959268 -166320286 - Cheshire DNA MER1_type -83 2337 881 1056 211 5 0 chr6 22959872 22960080 -166319474 + MER3 DNA MER1_type 1 209 0 376 267 30 59 chr6 22960296 22960431 -166319123 - L2 LINE L2 -1 3312 3182 1248 91 151 0 chr6 22960941 22961140 -166318414 - MER30 DNA MER1_type 0 230 2 2033 148 33 12 chr6 22961390 22961720 -166317834 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr6 22962975 22962998 -166316556 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22963649 22963677 -166315877 + AT_rich Low_complexity Low_complexity 1 28 0 365 240 96 10 chr6 22965302 22965406 -166314148 + MIR SINE MIR 140 252 -10 333 47 0 0 chr6 22965673 22965716 -166313838 + (TG)n Simple_repeat Simple_repeat 2 44 0 186 241 56 19 chr6 22965730 22965784 -166313770 + MIR3 SINE MIR 141 196 -12 1404 213 51 14 chr6 22967143 22967495 -166312059 - MLT1A1 LTR MaLR 0 365 1 295 234 137 48 chr6 22967986 22968110 -166311444 + MIR SINE MIR 1 136 -72 613 260 85 0 chr6 22968332 22968509 -166311045 + MIR SINE MIR 40 231 -31 672 185 76 0 chr6 22969444 22969563 -166309991 - FLAM_A SINE Alu -4 129 2 1038 175 20 55 chr6 22970462 22970662 -166308892 - MER58A DNA MER1_type -31 193 1 2951 165 47 30 chr6 22972612 22973218 -166306336 - LTR27 LTR ERV1 0 636 1 1234 180 0 72 chr6 22973480 22973730 -166305824 + AluJb SINE Alu 58 289 -23 279 284 99 81 chr6 22973813 22974024 -166305530 + MIR SINE MIR 15 229 -33 578 255 103 22 chr6 22974099 22974283 -166305271 - MIR SINE MIR 0 262 64 1613 180 0 76 chr6 22974703 22975020 -166304534 - AluJo SINE Alu -17 295 3 775 156 0 8 chr6 22975081 22975209 -166304345 + FLAM_C SINE Alu 1 127 -16 4360 218 58 32 chr6 22975370 22977694 -166301860 - L1ME1 LINE L1 -48 6118 3663 5794 78 25 1 chr6 22977726 22978518 -166301036 - L1PA10 LINE L1 -1 7605 6795 * 15722 141 7 2 chr6 22978506 22981076 -166298478 - L1PA10 LINE L1 -1627 5957 3375 2244 259 27 54 chr6 22981070 22982104 -166297450 - L1PA10 LINE L1 -4745 2253 1 * 1410 145 8 20 chr6 22982122 22982371 -166297183 - L1PB3 LINE L1 -8 6146 5901 1696 244 109 10 chr6 22982372 22982518 -166297036 - L1ME1 LINE L1 -2470 3676 3546 183 42 0 0 chr6 22982518 22982542 -166297012 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1696 244 109 10 chr6 22982542 22983082 -166296472 - L1ME1 LINE L1 -2600 3546 2922 2244 98 0 0 chr6 22985251 22985564 -166293990 - AluSx SINE Alu 0 313 1 312 183 158 85 chr6 22985907 22986153 -166293401 + HAL1 LINE L1 922 1185 -1322 1083 288 162 34 chr6 22986202 22987301 -166292253 + HAL1 LINE L1 1267 2506 -1 463 44 176 0 chr6 22988300 22988368 -166291186 + MADE1 DNA Mariner 1 80 0 846 192 8 110 chr6 22988804 22988955 -166290599 - L1ME1 LINE L1 -6 6160 6042 1703 172 0 14 chr6 22988955 22989275 -166290279 - AluJo SINE Alu 0 316 1 846 192 8 110 chr6 22989275 22989376 -166290178 - L1ME1 LINE L1 -124 6042 5932 784 259 19 67 chr6 22989432 22989803 -166289751 - L1ME3A LINE L1 -53 6100 5748 1105 75 0 20 chr6 22989811 22989957 -166289597 + AluY SINE Alu 132 274 -37 4059 251 75 39 chr6 22990013 22992123 -166287431 - L1ME3A LINE L1 -475 5678 3494 2460 59 0 13 chr6 22992124 22992427 -166287127 - AluY SINE Alu 0 311 13 232 250 0 0 chr6 22992691 22992759 -166286795 + T-rich Low_complexity Low_complexity 1 68 0 279 348 8 8 chr6 22992768 22992886 -166286668 - MLT1-int LTR MaLR -555 816 699 234 253 67 20 chr6 22992891 22993041 -166286513 - L1ME3A LINE L1 -5002 1308 1152 402 253 11 0 chr6 22993188 22993279 -166286275 + MER5A DNA MER1_type 12 103 -86 296 247 93 83 chr6 22993315 22993505 -166286049 - L1MEd LINE L1 -5104 1015 828 2298 115 50 6 chr6 22993505 22993862 -166285692 + THE1C LTR MaLR 3 375 0 296 247 93 83 chr6 22993862 22994106 -166285448 - L1MEd LINE L1 -5291 828 593 863 259 56 0 chr6 22994215 22994412 -166285142 + MER63A DNA MER1_type 1 208 -2 743 63 0 0 chr6 22994835 22994930 -166284624 + AluY SINE Alu 213 307 -4 1745 157 85 9 chr6 22995043 22995374 -166284180 - L1MC1 LINE L1 -12 6321 5966 1750 166 49 3 chr6 23045802 23046086 -166233468 + AluJb SINE Alu 1 297 -15 317 333 38 8 chr6 23046089 23046221 -166233333 + MIR SINE MIR 61 196 -66 688 241 36 27 chr6 23046892 23047116 -166232438 - MSTD LTR MaLR -170 226 1 1464 188 83 24 chr6 23047116 23047452 -166232102 + MSTD LTR MaLR 41 396 0 368 231 148 0 chr6 23048150 23048258 -166231296 - L2 LINE L2 -1 3312 3189 1967 149 0 0 chr6 23050052 23050367 -166229187 - AluSx SINE Alu 0 315 1 2117 82 16 43 chr6 23050374 23050677 -166228877 - AluSc SINE Alu -14 295 1 405 297 43 0 chr6 23051212 23051350 -166228204 + MIR3 SINE MIR 51 194 -14 2249 57 43 33 chr6 23052804 23053104 -166226450 + AluY SINE Alu 1 303 -8 2395 63 0 3 chr6 23053104 23053404 -166226150 + AluY SINE Alu 1 299 -12 4192 138 17 13 chr6 23053422 23053439 -166226115 + L1MB2 LINE L1 5458 5473 -698 225 0 0 0 chr6 23053439 23053464 -166226090 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4192 138 17 13 chr6 23053464 23054154 -166225400 + L1MB2 LINE L1 5473 6168 -3 627 301 26 40 chr6 23054165 23054394 -166225160 + MIR SINE MIR 22 253 -9 671 231 19 39 chr6 23054451 23054711 -166224843 + L1MC5 LINE L1 7659 7913 -48 1311 92 35 0 chr6 23055072 23055245 -166224309 + AluSg/x SINE Alu 133 311 -1 515 172 0 0 chr6 23055299 23055386 -166224168 + FLAM SINE Alu 41 127 -16 1995 130 3 7 chr6 23055401 23055685 -166223869 + AluSx SINE Alu 1 283 -29 252 0 0 0 chr6 23055951 23055979 -166223575 + (T)n Simple_repeat Simple_repeat 1 28 0 333 251 124 66 chr6 23056801 23057042 -166222512 + MIR SINE MIR 3 262 0 323 232 184 14 chr6 23057083 23057290 -166222264 + MER113 DNA MER1_type? 36 277 -244 2417 96 0 3 chr6 23058162 23058475 -166221079 - AluSx SINE Alu 0 312 1 561 227 67 0 chr6 23058479 23058629 -166220925 - L1MB4 LINE L1 -118 6062 5903 308 220 242 0 chr6 23058889 23058980 -166220574 + L2 LINE L2 3197 3309 -4 574 250 115 48 chr6 23059196 23059461 -166220093 + L1ME4a LINE L1 5692 5993 -128 2131 135 0 10 chr6 23059461 23059772 -166219782 + AluJb SINE Alu 1 308 -4 574 250 115 48 chr6 23059772 23059898 -166219656 + L1ME4a LINE L1 5993 6109 -12 368 294 97 59 chr6 23060380 23060624 -166218930 + MIR SINE MIR 3 262 0 660 131 65 0 chr6 23060665 23060772 -166218782 + FLAM_A SINE Alu 20 133 -9 27 0 0 0 chr6 23062424 23062451 -166217103 + AT_rich Low_complexity Low_complexity 1 27 0 352 347 8 16 chr6 23062646 23062770 -166216784 + L2 LINE L2 2578 2700 -614 294 362 11 32 chr6 23062819 23062913 -166216641 + L2 LINE L2 3102 3193 -79 222 62 0 0 chr6 23063747 23063779 -166215775 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 2025 119 18 0 chr6 23063779 23064056 -166215498 - AluSg SINE Alu -28 282 1 580 268 176 35 chr6 23064481 23064648 -166214906 - L1ME4a LINE L1 -35 6086 5944 2184 89 7 7 chr6 23064648 23064939 -166214615 - AluSg SINE Alu -19 291 1 580 268 176 35 chr6 23064939 23065253 -166214301 - L1ME4a LINE L1 -177 5944 5537 338 306 0 37 chr6 23065259 23065393 -166214161 - L1ME4a LINE L1 -2322 3824 3696 187 320 31 41 chr6 23065619 23065716 -166213838 - MIR SINE MIR -145 117 22 1899 127 7 29 chr6 23065896 23066204 -166213350 + AluJo SINE Alu 1 301 -11 394 286 141 42 chr6 23066295 23066536 -166213018 - L1ME4a LINE L1 -2705 3441 3177 31 26 0 0 chr6 23066618 23066656 -166212898 + AT_rich Low_complexity Low_complexity 1 38 0 284 333 114 8 chr6 23067001 23067124 -166212430 - L2 LINE L2 -10 3303 3168 2036 91 0 0 chr6 23067224 23067476 -166212078 - AluSx SINE Alu -60 252 1 207 100 0 0 chr6 23068142 23068172 -166211382 + (CA)n Simple_repeat Simple_repeat 2 31 0 325 308 0 0 chr6 23068876 23068954 -166210600 - MER2 DNA MER2_type 0 345 268 931 170 48 0 chr6 23069040 23069205 -166210349 - MER2 DNA MER2_type -172 173 1 1832 236 63 31 chr6 23069446 23070021 -166209533 + MLT1E LTR MaLR 1 593 0 329 295 68 17 chr6 23070034 23070271 -166209283 + L1ME LINE L1 4814 5062 -1084 768 266 19 62 chr6 23070416 23070439 -166209115 + L1ME LINE L1 5260 5282 -884 1797 158 0 61 chr6 23070439 23070564 -166208990 + AluJo SINE Alu 1 132 -180 2350 113 0 0 chr6 23070564 23070874 -166208680 + AluSx SINE Alu 1 310 -2 1797 158 0 61 chr6 23070874 23071077 -166208477 + AluJo SINE Alu 132 309 -3 768 266 19 62 chr6 23071077 23071166 -166208388 + L1ME LINE L1 5282 5373 -793 198 103 0 0 chr6 23071166 23071195 -166208359 + (TA)n Simple_repeat Simple_repeat 1 29 0 768 266 19 62 chr6 23071195 23071527 -166208027 + L1ME LINE L1 5373 5683 -483 2062 95 7 52 chr6 23072322 23072627 -166206927 - AluSc SINE Alu -18 291 1 669 281 45 10 chr6 23073139 23073338 -166206216 - MIR SINE MIR -12 250 45 222 37 0 0 chr6 23074076 23074103 -166205451 + (A)n Simple_repeat Simple_repeat 1 27 0 181 219 0 0 chr6 23074733 23074765 -166204789 + L2 LINE L2 3151 3182 -90 246 367 46 0 chr6 23074869 23074978 -166204576 + L2 LINE L2 3156 3269 -3 2261 102 0 13 chr6 23078441 23078755 -166200799 + AluSg SINE Alu 1 310 0 647 250 88 20 chr6 23079314 23079518 -166200036 - MIR SINE MIR -42 220 3 569 303 58 33 chr6 23080247 23080488 -166199066 + L2 LINE L2 2569 2815 -499 452 219 164 64 chr6 23080516 23080735 -166198819 - L1ME LINE L1 -331 5790 5550 1073 178 8 54 chr6 23081333 23081575 -166197979 - AluJo SINE Alu -6 306 76 2566 112 3 11 chr6 23081848 23082215 -166197339 + THE1B LTR MaLR 1 364 0 2045 132 0 7 chr6 23082240 23082528 -166197026 - AluSx SINE Alu -21 291 6 22 0 0 0 chr6 23084091 23084113 -166195441 + AT_rich Low_complexity Low_complexity 1 22 0 622 300 42 6 chr6 23084800 23085000 -166194554 - MIR SINE MIR -54 208 3 952 222 36 13 chr6 23085754 23085979 -166193575 - MIR SINE MIR -19 243 14 258 285 110 89 chr6 23085993 23086239 -166193315 + L2 LINE L2 3017 3267 -5 2142 122 6 6 chr6 23087906 23088217 -166191337 - AluSq SINE Alu -2 311 1 211 182 0 0 chr6 23088884 23088917 -166190637 + polypyrimidine Low_complexity Low_complexity 3 35 0 1560 175 16 62 chr6 23088923 23089243 -166190311 - AluJo SINE Alu -6 306 2 1349 194 121 59 chr6 23090316 23090738 -166188816 - MLT1D LTR MaLR -57 448 1 333 264 69 129 chr6 23091148 23091466 -166188088 + MLT1H LTR MaLR 124 422 -127 348 24 0 0 chr6 23091602 23091643 -166187911 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1068 244 119 44 chr6 23091643 23092162 -166187392 - L2 LINE L2 -13 3300 2736 2230 184 60 7 chr6 23092170 23092708 -166186846 - L1MB4 LINE L1 -1 6179 5614 226 239 0 0 chr6 23092710 23092756 -166186798 - L2 LINE L2 -565 2749 2704 549 281 80 5 chr6 23093204 23093403 -166186151 - MIR SINE MIR -11 251 38 29 47 0 0 chr6 23093792 23093835 -166185719 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr6 23093878 23093901 -166185653 + AT_rich Low_complexity Low_complexity 1 23 0 1833 162 0 19 chr6 23094454 23094762 -166184792 + AluJb SINE Alu 1 302 -10 541 241 122 82 chr6 23094833 23095152 -166184402 + MLT1I LTR MaLR 69 400 -9 235 339 54 8 chr6 23095442 23095572 -166183982 + LTR67 LTR ERVL 97 232 -325 324 251 105 47 chr6 23095593 23095784 -166183770 + LTR67 LTR ERVL 356 557 0 242 236 69 97 chr6 23095852 23095895 -166183659 + L2 LINE L2 3136 3179 -134 2125 167 3 21 chr6 23095895 23096267 -166183287 - MLT1A1 LTR MaLR 0 365 1 242 236 69 97 chr6 23096267 23096367 -166183187 + L2 LINE L2 3179 3275 -38 434 213 37 9 chr6 23096381 23096489 -166183065 + MER94 DNA DNA 1 111 -23 261 240 53 13 chr6 23097363 23097438 -166182116 + MIR SINE MIR 185 262 0 681 287 30 0 chr6 23098793 23098960 -166180594 - MIR SINE MIR -90 172 1 1156 224 53 0 chr6 23098987 23099232 -166180322 - AluJo SINE Alu -17 295 38 1054 79 7 0 chr6 23099334 23099486 -166180068 + MER4D LTR ERV1 176 328 -544 2242 99 0 3 chr6 23099487 23099780 -166179774 - AluSx SINE Alu -14 298 7 1806 137 7 52 chr6 23099949 23100256 -166179298 - AluJb SINE Alu -19 293 1 1404 179 16 35 chr6 23102152 23102470 -166177084 - MER33 DNA MER1_type 0 324 13 478 152 31 96 chr6 23102562 23102699 -166176855 + MIR3 SINE MIR 74 202 -6 330 281 106 55 chr6 23103215 23103414 -166176140 - L1ME LINE L1 -645 5476 5268 306 91 0 0 chr6 23104061 23104105 -166175449 + L1MB1 LINE L1 6120 6163 -5 2306 93 3 3 chr6 23105655 23105956 -166173598 - AluSq SINE Alu -10 303 3 201 273 191 9 chr6 23106893 23107003 -166172551 + MIR3 SINE MIR 67 196 -12 21 75 0 15 chr6 23107261 23107293 -166172261 + AT_rich Low_complexity Low_complexity 1 32 -34 2949 6 0 0 chr6 23107293 23107611 -166171943 - AluYb8 SINE Alu 0 318 1 21 75 0 15 chr6 23107611 23107645 -166171909 + AT_rich Low_complexity Low_complexity 32 66 0 1869 158 0 22 chr6 23108102 23108413 -166171141 - AluJo SINE Alu -8 304 1 204 97 0 0 chr6 23108596 23108627 -166170927 + (GA)n Simple_repeat Simple_repeat 2 32 0 213 91 91 23 chr6 23108811 23108855 -166170699 - MIR3 SINE MIR -49 159 113 1166 179 133 60 chr6 23109160 23109529 -166170025 - MSTD LTR MaLR 0 396 1 675 165 0 0 chr6 23110223 23110338 -166169216 - FRAM SINE Alu -2 174 60 23 0 0 0 chr6 23110339 23110362 -166169192 + AT_rich Low_complexity Low_complexity 1 23 0 2091 138 0 0 chr6 23110463 23110754 -166168800 - AluSx SINE Alu -21 291 1 1843 164 4 0 chr6 23110765 23111101 -166168453 - AluJb SINE Alu 0 337 1 2373 89 0 0 chr6 23112169 23112461 -166167093 + AluSx SINE Alu 3 294 -18 300 53 0 0 chr6 23113809 23113847 -166165707 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 255 125 0 0 chr6 23116281 23116329 -166163225 + L1MC3 LINE L1 7738 7785 0 21 0 0 0 chr6 23117638 23117659 -166161895 + AT_rich Low_complexity Low_complexity 1 21 0 1378 171 4 61 chr6 23118293 23118470 -166161084 - AluJo SINE Alu -8 304 147 1988 160 3 6 chr6 23118470 23118783 -166160771 - AluSx SINE Alu 0 312 1 1378 171 4 61 chr6 23118783 23118885 -166160669 - AluJo SINE Alu -165 147 41 1219 87 35 23 chr6 23118939 23119112 -166160442 - AluSg/x SINE Alu -5 305 131 273 259 25 0 chr6 23119491 23119572 -166159982 - L1MC5 LINE L1 -64 7897 7815 192 217 130 54 chr6 23122110 23122202 -166157352 + MIR SINE MIR 105 203 -59 407 51 0 17 chr6 23125076 23125135 -166154419 + (TG)n Simple_repeat Simple_repeat 1 58 0 436 245 40 31 chr6 23125262 23125423 -166154131 + MIR SINE MIR 3 161 -62 1719 192 23 0 chr6 23126368 23126670 -166152884 - AluJb SINE Alu -3 309 1 256 335 28 84 chr6 23126999 23127178 -166152376 + L2 LINE L2 3099 3267 -5 264 282 94 31 chr6 23127405 23127607 -166151947 + MER20B DNA MER1_type 5 219 0 2770 48 11 3 chr6 23127638 23127990 -166151564 - THE1A LTR MaLR 0 355 1 556 299 128 80 chr6 23127999 23128414 -166151140 + L2 LINE L2 2836 3270 -2 591 237 182 40 chr6 23128664 23128917 -166150637 + MER5C DNA MER1_type 1 289 -35 324 228 69 111 chr6 23131034 23131223 -166148331 + MIR SINE MIR 70 250 -12 1740 153 3 66 chr6 23131366 23131699 -166147855 + AluJb SINE Alu 1 312 0 1177 190 9 0 chr6 23132565 23132776 -166146778 + AluJo SINE Alu 85 297 -15 2533 59 0 3 chr6 23133431 23133735 -166145819 + AluY SINE Alu 1 303 -8 21 57 0 0 chr6 23135607 23135642 -166143912 + AT_rich Low_complexity Low_complexity 1 35 0 2151 110 0 20 chr6 23136008 23136308 -166143246 - AluSx SINE Alu -18 294 1 2293 67 0 3 chr6 23136717 23137020 -166142534 - AluY SINE Alu 0 302 1 1169 156 6 0 chr6 23138080 23138260 -166141294 - AluJo SINE Alu -131 181 1 1058 177 0 21 chr6 23140839 23141025 -166138529 + MLT1D LTR MaLR 2 183 -322 1552 113 61 0 chr6 23141035 23141284 -166138270 + AluSx SINE Alu 59 320 0 1046 211 95 9 chr6 23141288 23141520 -166138034 + MLT1D LTR MaLR 248 499 -6 273 362 80 6 chr6 23142244 23142407 -166137147 - MIR SINE MIR -9 253 79 578 235 74 19 chr6 23142641 23142803 -166136751 - MIR SINE MIR -44 218 48 2312 50 18 0 chr6 23143416 23143739 -166135815 - AluY SINE Alu 0 328 1 715 170 177 0 chr6 23144848 23144995 -166134559 + MER69A DNA AcHobo 5 177 0 401 270 54 0 chr6 23145360 23145471 -166134083 - L2 LINE L2 0 3272 3156 202 332 145 31 chr6 23145983 23146176 -166133378 + L2 LINE L2 2467 2681 -633 2150 125 0 0 chr6 23146899 23147194 -166132360 - AluSx SINE Alu -17 295 1 2284 90 0 19 chr6 23148152 23148462 -166131092 - AluSq SINE Alu -9 304 1 1900 164 3 3 chr6 23148728 23149040 -166130514 - AluJo SINE Alu 0 312 1 205 339 0 37 chr6 23149693 23149802 -166129752 + CT-rich Low_complexity Low_complexity 4 108 0 526 281 109 34 chr6 23150213 23150587 -166128967 + MLT1I LTR MaLR 1 449 -1 342 0 0 0 chr6 23150686 23150724 -166128830 + (TG)n Simple_repeat Simple_repeat 2 39 0 2007 226 145 15 chr6 23150784 23151403 -166128151 - L1ME3A LINE L1 0 6170 5461 402 335 70 10 chr6 23151503 23151703 -166127851 - MIR SINE MIR -31 231 20 210 143 0 0 chr6 23151914 23151949 -166127605 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 251 261 29 14 chr6 23152232 23152301 -166127253 + GA-rich Low_complexity Low_complexity 5 74 0 492 208 69 28 chr6 23152301 23152445 -166127109 + L1MA9 LINE L1 6125 6274 -38 2042 220 69 8 chr6 23152482 23152960 -166126594 + MER119 DNA MER1_type 17 523 -60 5368 217 30 15 chr6 23154148 23155519 -166124035 + L1MB4 LINE L1 4089 5490 -690 3790 153 32 7 chr6 23155515 23156471 -166123083 - L1PA16 LINE L1 -547 5619 4645 * 3609 104 17 10 chr6 23156476 23156996 -166122558 + L1PA16 LINE L1 5643 6166 0 3078 162 36 5 chr6 23156997 23157553 -166122001 + L1MB4 LINE L1 5486 6058 -122 193 253 33 77 chr6 23157602 23157693 -166121861 - L2 LINE L2 -498 2816 2730 913 45 0 9 chr6 23158870 23158980 -166120574 + AluY SINE Alu 120 228 -83 2189 106 0 3 chr6 23159167 23159449 -166120105 - AluSq SINE Alu -17 296 16 288 288 55 49 chr6 23159465 23159730 -166119824 - L1MC5 LINE L1 -308 7679 7481 261 333 10 10 chr6 23159900 23159996 -166119558 - MER5A DNA MER1_type -68 121 26 8949 169 51 17 chr6 23160243 23160323 -166119231 - L1MC3 LINE L1 -607 7178 7102 8657 108 45 9 chr6 23160323 23161580 -166117974 - HSMAR2 DNA Mariner 0 1302 1 8949 169 51 17 chr6 23161580 23161638 -166117916 - L1MC3 LINE L1 -683 7102 7047 180 77 0 0 chr6 23161638 23161664 -166117890 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 8949 169 51 17 chr6 23161664 23162616 -166116938 - L1MC3 LINE L1 -738 7047 6007 180 0 0 0 chr6 23162616 23162636 -166116918 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8949 169 51 17 chr6 23162636 23163240 -166116314 - L1MC3 LINE L1 -1778 6007 5425 2163 135 0 0 chr6 23163340 23163644 -166115910 + AluSx SINE Alu 1 304 -8 2695 99 31 3 chr6 23164625 23164979 -166114575 - THE1B LTR MaLR 0 364 1 1522 123 176 0 chr6 23166597 23166841 -166112713 + AluSx SINE Alu 1 287 -25 789 202 0 8 chr6 23167477 23167606 -166111948 + FLAM_C SINE Alu 2 129 -14 583 78 31 31 chr6 23167606 23167735 -166111819 + (TA)n Simple_repeat Simple_repeat 2 130 0 297 333 89 15 chr6 23167817 23167952 -166111602 - L2 LINE L2 -1 3271 3127 2032 145 0 0 chr6 23168250 23168546 -166111008 - AluSx SINE Alu -16 296 1 451 272 114 80 chr6 23168691 23169129 -166110425 - MLT1J LTR MaLR -56 455 3 470 233 27 48 chr6 23169266 23169337 -166110217 + MER5B DNA MER1_type 36 107 -71 808 197 34 56 chr6 23169337 23169470 -166110084 - MER5B DNA MER1_type -4 174 44 2297 76 20 0 chr6 23169470 23169771 -166109783 + AluY SINE Alu 1 307 -4 808 197 34 56 chr6 23169771 23169815 -166109739 - MER5B DNA MER1_type -134 44 1 470 233 27 48 chr6 23169815 23169889 -166109665 + MER5B DNA MER1_type 107 178 0 1885 151 3 10 chr6 23170745 23171036 -166108518 - AluJb SINE Alu -23 289 1 545 264 192 6 chr6 23171207 23171389 -166108165 - MIR SINE MIR 0 262 47 219 146 0 24 chr6 23171425 23171467 -166108087 + (GGA)n Simple_repeat Simple_repeat 1 40 0 2260 122 165 5 chr6 23171697 23172066 -166107488 + MSTA LTR MaLR 1 428 0 413 127 70 0 chr6 23172448 23172519 -166107035 + AluJ/FRAM SINE Alu 230 305 -7 335 355 93 23 chr6 23172740 23172999 -166106555 + L2 LINE L2 2926 3202 -70 366 247 21 0 chr6 23174362 23174455 -166105099 - MIR3 SINE MIR -6 202 108 401 294 83 53 chr6 23175428 23175656 -166103898 - MIR SINE MIR -20 242 8 5716 106 13 5 chr6 23175922 23176750 -166102804 + L1PA16 LINE L1 5332 6166 0 2557 67 0 16 chr6 23176863 23177177 -166102377 - AluY SINE Alu -2 309 1 1841 174 16 47 chr6 23177620 23178143 -166101411 + L1MB2 LINE L1 5647 6125 -46 234 143 0 41 chr6 23178195 23178244 -166101310 + L1MB5 LINE L1 6096 6142 -32 513 153 0 0 chr6 23178244 23178316 -166101238 + AluJ/FRAM SINE Alu 221 292 -20 2058 124 3 0 chr6 23178461 23178743 -166100811 - AluSx SINE Alu -12 300 18 2449 42 0 3 chr6 23179630 23179951 -166099603 + AluY SINE Alu 1 320 0 1506 201 108 31 chr6 23180036 23180462 -166099092 - MLT1C LTR MaLR -2 465 17 210 273 81 61 chr6 23180712 23180811 -166098743 - MIR SINE MIR -90 118 18 1758 154 31 20 chr6 23181904 23182197 -166097357 - AluJo SINE Alu -16 296 1 401 337 121 8 chr6 23182782 23183138 -166096416 - L2 LINE L2 -941 2373 1978 200 247 0 110 chr6 23183238 23183311 -166096243 + L2 LINE L2 2244 2308 -1006 1171 215 14 0 chr6 23183607 23183826 -166095728 - MER58A DNA MER1_type -2 222 1 207 139 0 0 chr6 23184040 23184076 -166095478 + (TG)n Simple_repeat Simple_repeat 1 36 0 1616 174 10 41 chr6 23184076 23184370 -166095184 - AluJo SINE Alu -27 285 1 2417 97 3 0 chr6 23184391 23184700 -166094854 - AluSx SINE Alu -2 310 1 2107 113 19 10 chr6 23185995 23186304 -166093250 - AluSx SINE Alu 0 312 1 2244 121 0 0 chr6 23186847 23187152 -166092402 - AluSx SINE Alu -7 305 1 675 167 161 6 chr6 23187158 23187338 -166092216 - L1MD3 LINE L1 0 7995 7788 831 158 12 18 chr6 23188910 23189074 -166090480 + L1MB3 LINE L1 6021 6183 0 210 255 147 59 chr6 23189124 23189226 -166090328 + L2 LINE L2 3183 3293 -20 241 252 126 50 chr6 23192288 23192407 -166087147 + L3 LINE CR1 1375 1502 -75 1942 252 50 33 chr6 23192438 23192658 -166086896 + MLT1E LTR MaLR 2 217 -376 3534 114 32 31 chr6 23192658 23193082 -166086472 + MER41C LTR ERV1 1 423 -131 1930 148 0 41 chr6 23193082 23193399 -166086155 - AluSx SINE Alu -8 304 1 2433 80 3 3 chr6 23193404 23193705 -166085849 - AluY SINE Alu -10 301 1 3534 114 32 31 chr6 23193705 23193827 -166085727 + MER41C LTR ERV1 426 554 0 1942 252 50 33 chr6 23193827 23194185 -166085369 + MLT1E LTR MaLR 217 590 -3 2148 140 25 68 chr6 23195509 23195953 -166083601 - L1MB5 LINE L1 -2 6172 5748 188 353 29 0 chr6 23197830 23197898 -166081656 - L3 LINE CR1 -84 1493 1424 1646 184 110 60 chr6 23198048 23198392 -166081162 - MLT1C LTR MaLR -8 459 87 2176 147 0 0 chr6 23198392 23198704 -166080850 - AluSx SINE Alu 0 312 1 1646 184 110 60 chr6 23198704 23198794 -166080760 - MLT1C LTR MaLR -380 87 3 1908 130 34 0 chr6 23200462 23200731 -166078823 + AluSc SINE Alu 1 278 -31 1818 128 0 36 chr6 23201408 23201724 -166077830 + AluSx SINE Alu 21 326 0 888 157 30 12 chr6 23201729 23201895 -166077659 + L1MB2 LINE L1 6001 6169 -2 272 89 0 22 chr6 23201965 23202010 -166077544 + (TA)n Simple_repeat Simple_repeat 2 45 0 1865 128 53 0 chr6 23203204 23203470 -166076084 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr6 23203471 23203503 -166076051 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7130 59 1 1 chr6 23203806 23205517 -166074037 + L1PA7 LINE L1 4444 6154 0 379 261 157 7 chr6 23205578 23205731 -166073823 - MIR SINE MIR -41 221 46 216 0 0 0 chr6 23205788 23205812 -166073742 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 258 271 14 0 chr6 23205889 23205959 -166073595 + MER63 DNA MER1_type 983 1053 -7 1500 200 77 69 chr6 23206218 23206730 -166072824 + MER39 LTR ERV1 1 666 0 2114 118 6 40 chr6 23206777 23207100 -166072454 - AluSx SINE Alu 0 312 1 26 0 0 0 chr6 23207798 23207824 -166071730 + AT_rich Low_complexity Low_complexity 1 26 0 2335 89 0 0 chr6 23207824 23208115 -166071439 - AluSx SINE Alu -21 291 1 213 196 0 0 chr6 23208746 23208792 -166070762 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2538 74 3 0 chr6 23208836 23209148 -166070406 - AluSp SINE Alu 0 313 1 23 54 0 0 chr6 23209162 23209199 -166070355 + AT_rich Low_complexity Low_complexity 1 37 0 2077 121 30 0 chr6 23209255 23209552 -166070002 - AluSx SINE Alu -6 306 1 264 257 125 28 chr6 23209552 23209696 -166069858 - L1ME4a LINE L1 -1 6120 5963 4856 104 32 96 chr6 23210015 23210568 -166068986 - Tigger3(Golem) DNA MER2_type -2 3027 2440 2208 89 0 7 chr6 23210568 23210849 -166068705 - AluSx SINE Alu -33 279 1 4856 104 32 96 chr6 23210849 23211274 -166068280 - Tigger3(Golem) DNA MER2_type -589 2440 1989 2166 118 3 3 chr6 23211274 23211570 -166067984 - AluSc SINE Alu -13 296 1 4856 104 32 96 chr6 23211570 23211897 -166067657 - Tigger3(Golem) DNA MER2_type -1040 1989 1 262 312 16 32 chr6 23211935 23212060 -166067494 - L2 LINE L2 0 3313 3191 816 261 107 27 chr6 23212063 23212522 -166067032 + L1MC/D LINE L1 5312 5799 -443 2279 110 44 99 chr6 23212560 23212834 -166066720 + LTR23 LTR ERV1 1 289 -148 2166 115 0 7 chr6 23212834 23213130 -166066424 - AluSx SINE Alu -18 294 1 2279 110 44 99 chr6 23213130 23213162 -166066392 + LTR23 LTR ERV1 289 321 -116 2237 90 4 0 chr6 23213162 23213441 -166066113 + AluSp SINE Alu 1 280 -33 194 0 0 37 chr6 23213441 23213468 -166066086 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2320 98 3 10 chr6 23213477 23213784 -166065770 + AluSx SINE Alu 1 305 -7 2279 110 44 99 chr6 23213784 23213919 -166065635 + LTR23 LTR ERV1 328 429 -8 1262 229 95 23 chr6 23213969 23214342 -166065212 + MER39 LTR ERV1 6 351 -356 201 39 0 0 chr6 23214342 23214368 -166065186 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1262 229 95 23 chr6 23214368 23214432 -166065122 + MER39 LTR ERV1 351 707 0 2339 95 0 3 chr6 23214914 23215220 -166064334 - AluSq SINE Alu -8 305 1 26 23 0 23 chr6 23215288 23215307 -166064247 + AT_rich Low_complexity Low_complexity 1 19 -24 2259 100 0 3 chr6 23215307 23215598 -166063956 + AluSc SINE Alu 1 290 -19 26 23 0 23 chr6 23215598 23215622 -166063932 + AT_rich Low_complexity Low_complexity 19 43 0 219 375 7 7 chr6 23215694 23215830 -166063724 + MIR SINE MIR 109 244 -18 192 77 0 0 chr6 23216432 23216458 -166063096 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 1831 46 0 5 chr6 23217155 23217374 -166062180 + AluY SINE Alu 94 311 0 284 307 35 9 chr6 23217915 23218029 -166061525 - MIR SINE MIR -76 186 70 217 316 31 31 chr6 23218091 23218189 -166061365 - MIR3 SINE MIR -103 105 8 1517 119 0 0 chr6 23218913 23219114 -166060440 - AluJb SINE Alu -16 296 96 2454 69 0 3 chr6 23220810 23221115 -166058439 + AluY SINE Alu 1 304 -7 712 210 103 103 chr6 23221620 23221930 -166057624 + MLT1A2 LTR MaLR 3 312 -62 750 227 0 0 chr6 23221951 23222230 -166057324 + CT-rich Low_complexity Low_complexity 1 279 0 1590 153 40 11 chr6 23222275 23222550 -166057004 - AluJo SINE Alu -17 295 13 376 113 4 0 chr6 23222550 23222622 -166056932 + MSTB2 LTR MaLR 356 438 0 1002 276 98 19 chr6 23222913 23223341 -166056213 - MLT1C LTR MaLR 0 467 6 22 35 0 0 chr6 23223471 23223500 -166056054 + AT_rich Low_complexity Low_complexity 1 29 0 2032 93 4 0 chr6 23223501 23223628 -166055926 - L1PB2 LINE L1 -5 6146 6020 3895 121 32 6 chr6 23223628 23224342 -166055212 - L1PB2 LINE L1 -137 6017 5254 243 0 0 0 chr6 23225544 23225571 -166053983 + (A)n Simple_repeat Simple_repeat 1 27 0 303 277 71 32 chr6 23226069 23226224 -166053330 + MIR SINE MIR 28 188 -74 1180 224 0 9 chr6 23226298 23226521 -166053033 + MER58A DNA MER1_type 1 221 -3 418 198 153 45 chr6 23228408 23228519 -166051035 - MLT1C LTR MaLR 0 467 345 4060 103 2 16 chr6 23228524 23229104 -166050450 + L1PA14 LINE L1 5590 6161 0 21 36 0 0 chr6 23229334 23229362 -166050192 + AT_rich Low_complexity Low_complexity 1 28 0 6986 69 0 9 chr6 23229368 23230938 -166048616 + L1PA6 LINE L1 4586 6147 -7 2396 90 0 6 chr6 23231086 23231398 -166048156 + AluSg SINE Alu 1 310 0 856 272 112 21 chr6 23231405 23231736 -166047818 - MLT1C LTR MaLR -104 363 3 2040 115 13 3 chr6 23232326 23232630 -166046924 + AluSq SINE Alu 1 307 -6 666 41 31 0 chr6 23232653 23232751 -166046803 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 274 347 52 36 chr6 23234226 23234419 -166045135 - MIR SINE MIR -2 260 65 1592 185 7 23 chr6 23234513 23234821 -166044733 - AluJo SINE Alu -9 303 1 504 216 230 34 chr6 23235822 23235970 -166043584 - MER63A DNA MER1_type -33 177 1 1973 144 0 3 chr6 23236175 23236488 -166043066 + AluSx SINE Alu 1 312 0 2322 90 0 0 chr6 23237402 23237703 -166041851 + AluSc SINE Alu 1 301 -8 1259 142 9 32 chr6 23237939 23238158 -166041396 + L1MC1 LINE L1 6112 6325 -8 2075 101 25 0 chr6 23238158 23238444 -166041110 - AluY SINE Alu -18 293 1 1569 137 26 99 chr6 23238680 23239023 -166040531 - AluYb8 SINE Alu 0 318 1 2565 133 54 28 chr6 23240085 23240513 -166039041 - LTR32 LTR ERVL -3 468 30 888 228 20 15 chr6 23240531 23240733 -166038821 - HERVL32 LTR ERVL -1 3417 3215 315 239 37 128 chr6 23240815 23240850 -166038704 - PABL_B-int LTR ERV1 -446 6676 6639 1694 166 7 3 chr6 23240850 23241140 -166038414 - AluJb SINE Alu -21 291 1 315 239 37 128 chr6 23241140 23241213 -166038341 - PABL_B-int LTR ERV1 -483 6639 6578 367 313 84 34 chr6 23241246 23241569 -166037985 - PABL_B-int LTR ERV1 -1091 6665 6327 7298 241 60 70 chr6 23242810 23243013 -166036541 - HERVL32 LTR ERVL -205 3213 3009 2236 93 0 3 chr6 23243013 23243325 -166036229 + AluY SINE Alu 1 311 0 7298 241 60 70 chr6 23243325 23243341 -166036213 - HERVL32 LTR ERVL -409 3009 2994 2284 84 0 0 chr6 23243341 23243638 -166035916 + AluSg SINE Alu 1 297 -13 7298 241 60 70 chr6 23243638 23245851 -166033703 - HERVL32 LTR ERVL -424 2994 1274 312 303 49 56 chr6 23246035 23246197 -166033357 - MER5B DNA MER1_type 0 178 18 3616 51 0 7 chr6 23246199 23246650 -166032904 - LTR7 LTR ERV1 -2 448 1 2457 84 48 13 chr6 23246650 23247029 -166032525 - HERVH LTR ERV1 0 7713 7322 1465 115 18 5 chr6 23247027 23247244 -166032310 - HERVH LTR ERV1 -1894 5819 5600 * 4421 142 3 1 chr6 23247245 23247906 -166031648 - HERVH LTR ERV1 -2564 5149 4488 3598 99 0 6 chr6 23247908 23248413 -166031141 - HERVH LTR ERV1 -3720 3993 3492 1014 113 7 0 chr6 23248403 23248553 -166031001 - HERVH LTR ERV1 -4423 3290 3140 * 21467 92 8 7 chr6 23248532 23251522 -166028032 - HERVH LTR ERV1 -4718 2995 1 3455 50 23 7 chr6 23251524 23251965 -166027589 - LTR7 LTR ERV1 -2 448 1 246 331 54 34 chr6 23254311 23254459 -166025095 - L2 LINE L2 -1011 2303 2153 200 35 35 0 chr6 23254528 23254557 -166024997 + (GA)n Simple_repeat Simple_repeat 1 30 0 466 136 0 91 chr6 23255047 23255157 -166024397 + MER53 DNA DNA 1 100 -89 243 61 0 0 chr6 23257263 23257296 -166022258 + (A)n Simple_repeat Simple_repeat 1 33 0 1969 115 3 3 chr6 23257298 23257584 -166021970 + AluSx SINE Alu 1 286 -26 1983 135 0 3 chr6 23258239 23258542 -166021012 + AluSx SINE Alu 1 302 -10 422 305 14 35 chr6 23258731 23258872 -166020682 - MER5A DNA MER1_type -25 164 27 2139 110 7 10 chr6 23259122 23259432 -166020122 - AluSg SINE Alu -1 309 1 322 224 62 95 chr6 23259981 23260160 -166019394 - MER5A DNA MER1_type -7 182 10 1613 152 50 7 chr6 23261249 23261532 -166018022 - AluJo SINE Alu -17 295 1 185 328 34 42 chr6 23262497 23262616 -166016938 - L2 LINE L2 -906 2408 2291 282 345 45 14 chr6 23262619 23262842 -166016712 - L2 LINE L2 -1135 2179 1950 355 278 22 0 chr6 23263000 23263051 -166016503 - L1MC4 LINE L1 -1339 6703 6648 1913 138 10 16 chr6 23263051 23263356 -166016198 - AluSx SINE Alu -9 303 1 355 278 22 0 chr6 23263356 23263394 -166016160 - L1MC4 LINE L1 -1394 6648 6612 1478 157 82 4 chr6 23263615 23263896 -166015658 + AluJb SINE Alu 1 303 -9 705 182 17 62 chr6 23263902 23263945 -166015609 + L1MB4 LINE L1 6013 6056 -124 2215 111 0 0 chr6 23263945 23264251 -166015303 + AluSq SINE Alu 1 306 -7 705 182 17 62 chr6 23264251 23264383 -166015171 + L1MB4 LINE L1 6056 6180 0 551 295 108 49 chr6 23264558 23265096 -166014458 + L2 LINE L2 2690 3260 -12 180 0 0 0 chr6 23265097 23265117 -166014437 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 357 219 110 0 chr6 23265655 23265737 -166013817 - MIR SINE MIR -16 246 156 225 308 19 39 chr6 23265727 23265831 -166013723 - MIR3 SINE MIR -97 111 10 * 207 0 0 0 chr6 23266306 23266329 -166013225 + (A)n Simple_repeat Simple_repeat 1 23 0 1245 190 0 35 chr6 23267071 23267329 -166012225 + AluJb SINE Alu 1 249 -63 2063 185 101 7 chr6 23267641 23268068 -166011486 - MLT1C LTR MaLR 0 467 1 315 0 0 0 chr6 23268144 23268179 -166011375 + (T)n Simple_repeat Simple_repeat 1 35 0 2441 51 0 3 chr6 23269934 23270245 -166009309 - AluY SINE Alu -1 310 1 2168 165 18 48 chr6 23270575 23270699 -166008855 + L1MA10 LINE L1 5782 5908 -426 2283 110 0 0 chr6 23270699 23271009 -166008545 + AluSg SINE Alu 1 310 0 2168 165 18 48 chr6 23271009 23271321 -166008233 + L1MA10 LINE L1 5908 6205 -129 314 218 30 135 chr6 23271630 23271763 -166007791 - MLT1J LTR MaLR -256 180 35 264 103 0 0 chr6 23271868 23271907 -166007647 + Alu SINE Alu 1 39 -261 2172 96 0 0 chr6 23271907 23272208 -166007346 + AluY SINE Alu 11 311 0 183 114 0 0 chr6 23273655 23273690 -166005864 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2178 115 3 0 chr6 23273790 23274102 -166005452 + AluSq SINE Alu 1 313 0 2486 47 0 0 chr6 23274440 23274740 -166004814 + AluY SINE Alu 1 300 -11 205 258 208 34 chr6 23274873 23274945 -166004609 + L2 LINE L2 2575 2633 -681 2208 156 19 6 chr6 23274945 23275305 -166004249 + MLT1A1 LTR MaLR 1 365 0 205 258 208 34 chr6 23275305 23275410 -166004144 + L2 LINE L2 2633 2783 -531 929 183 27 32 chr6 23275972 23275991 -166003563 + MER5A DNA MER1_type 1 19 -170 2052 157 30 30 chr6 23275991 23276354 -166003200 - THE1B LTR MaLR -1 363 1 929 183 27 32 chr6 23276354 23276520 -166003034 + MER5A DNA MER1_type 19 185 -4 2168 114 3 0 chr6 23276545 23276853 -166002701 + AluSq SINE Alu 1 309 -4 346 267 145 0 chr6 23277222 23277353 -166002201 + MIR SINE MIR 43 192 -70 1056 156 5 26 chr6 23277530 23277722 -166001832 - MER53 DNA DNA 0 189 2 2152 99 0 3 chr6 23277793 23278085 -166001469 + AluSx SINE Alu 1 291 -21 1845 130 10 7 chr6 23278878 23279177 -166000377 - AluSx SINE Alu -12 300 1 1078 74 0 0 chr6 23279177 23279312 -166000242 - AluSq/x SINE Alu -177 135 1 344 279 70 16 chr6 23281352 23281481 -165998073 - MIR SINE MIR -64 198 63 317 263 141 20 chr6 23281742 23281841 -165997713 - L2 LINE L2 -7 3306 3196 358 248 191 83 chr6 23282018 23282405 -165997149 - LTR67 LTR ERVL -14 543 115 2298 101 0 3 chr6 23282570 23282867 -165996687 + AluSc SINE Alu 1 296 -13 359 82 0 33 chr6 23283129 23283190 -165996364 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 527 306 32 96 chr6 23283193 23283507 -165996047 - L2 LINE L2 -1 3271 2978 4140 134 10 5 chr6 23283544 23284172 -165995382 + MER41B LTR ERV1 5 635 0 280 234 109 31 chr6 23284376 23284504 -165995050 - L2 LINE L2 -581 2733 2596 21 23 0 47 chr6 23284550 23284567 -165994987 + AT_rich Low_complexity Low_complexity 1 17 -24 1968 134 3 3 chr6 23284567 23284851 -165994703 + AluSx SINE Alu 1 284 -28 21 23 0 47 chr6 23284851 23284876 -165994678 + AT_rich Low_complexity Low_complexity 17 41 0 229 237 140 21 chr6 23285012 23285105 -165994449 - L2 LINE L2 -961 2353 2250 25 0 0 0 chr6 23285295 23285320 -165994234 + AT_rich Low_complexity Low_complexity 1 25 0 4160 93 4 7 chr6 23286262 23286818 -165992736 + MER41A LTR ERV1 1 554 0 180 111 0 0 chr6 23287579 23287606 -165991948 + (T)n Simple_repeat Simple_repeat 1 27 0 250 294 37 18 chr6 23288471 23288580 -165990974 + MIR SINE MIR 18 128 -80 2483 90 0 0 chr6 23289086 23289397 -165990157 - AluSx SINE Alu -1 311 1 2213 118 0 0 chr6 23289895 23290191 -165989363 - AluY SINE Alu -15 296 1 282 191 238 48 chr6 23291022 23291148 -165988406 + MLT1L LTR MaLR 131 280 -335 349 316 43 11 chr6 23291215 23291402 -165988152 + MLT1L LTR MaLR 410 602 -13 1946 166 7 0 chr6 23291569 23291865 -165987689 + AluJb SINE Alu 1 298 -14 2316 143 50 31 chr6 23291889 23292083 -165987471 + MSTB LTR MaLR 1 190 -236 2462 99 3 0 chr6 23292083 23292395 -165987159 - AluSp SINE Alu 0 313 1 2316 143 50 31 chr6 23292395 23292618 -165986936 + MSTB LTR MaLR 190 426 0 2222 118 0 0 chr6 23293549 23293845 -165985709 - AluSx SINE Alu -16 296 1 753 235 40 10 chr6 23294155 23294355 -165985199 + MIR SINE MIR 36 241 -21 3936 65 2 0 chr6 23294594 23295089 -165984465 + L1PA8 LINE L1 5677 6172 0 379 233 4 41 chr6 23295156 23295271 -165984283 - HAL1b LINE L1 -806 542 444 242 204 146 58 chr6 23295670 23295710 -165983844 - L1ME2 LINE L1 -1 6163 6128 2124 115 0 16 chr6 23295710 23296014 -165983540 + AluSx SINE Alu 1 299 -13 242 204 146 58 chr6 23296014 23296076 -165983478 - L1ME2 LINE L1 -36 6128 6052 1990 96 4 18 chr6 23296087 23296359 -165983195 + AluSx SINE Alu 1 268 -44 236 343 89 7 chr6 23296687 23296990 -165982564 - L1M4 LINE L1 -2017 4129 3802 756 98 106 0 chr6 23297205 23297328 -165982226 + MER85 DNA T2_type 1 136 -3 313 241 27 33 chr6 23297348 23297454 -165982100 + MIR SINE MIR 37 145 -63 2033 121 72 0 chr6 23299558 23299848 -165979706 + AluSx SINE Alu 1 311 -1 832 266 57 4 chr6 23300090 23300334 -165979220 - MIR SINE MIR 0 262 6 31 20 0 20 chr6 23300624 23300641 -165978913 + AT_rich Low_complexity Low_complexity 1 17 -31 1716 94 5 0 chr6 23300641 23300853 -165978701 + AluSp SINE Alu 75 287 -26 31 20 0 20 chr6 23300853 23300884 -165978670 + AT_rich Low_complexity Low_complexity 17 48 0 2125 130 3 0 chr6 23301466 23301767 -165977787 + AluSq SINE Alu 12 313 0 26 30 0 0 chr6 23301959 23301992 -165977562 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 23302091 23302118 -165977436 + AT_rich Low_complexity Low_complexity 1 27 0 1807 180 100 90 chr6 23302720 23303037 -165976517 - MLT2B1 LTR ERVL -3 517 192 2308 116 7 0 chr6 23303037 23303347 -165976207 - AluSx SINE Alu 0 312 1 1807 180 100 90 chr6 23303347 23303541 -165976013 - MLT2B1 LTR ERVL -328 192 1 2402 97 0 0 chr6 23303850 23304159 -165975395 + AluSc SINE Alu 1 309 0 328 316 6 63 chr6 23306368 23306416 -165973138 + L2 LINE L2 2909 2958 -314 3196 44 2 17 chr6 23306416 23306822 -165972732 - L1PA7 LINE L1 -1 6153 5754 328 316 6 63 chr6 23306822 23306931 -165972623 + L2 LINE L2 2958 3057 -215 1270 255 54 26 chr6 23307096 23307559 -165971995 - L1MC4a LINE L1 -1753 6055 5580 5417 130 169 27 chr6 23307565 23308668 -165970886 - MER52C LTR ERV1 -18 1260 2 599 264 146 15 chr6 23308692 23309037 -165970517 - L1M3 LINE L1 -609 5562 5173 2315 116 33 25 chr6 23309748 23310109 -165969445 - THE1B LTR MaLR 0 364 1 1506 252 27 56 chr6 23311036 23311485 -165968069 + MLT1J LTR MaLR 72 507 -4 321 299 15 58 chr6 23312027 23312164 -165967390 - MIR3 SINE MIR -65 143 13 2055 124 0 11 chr6 23312647 23312954 -165966600 - AluSx SINE Alu 0 309 6 2224 109 0 3 chr6 23312967 23313269 -165966285 - AluSg SINE Alu -9 301 1 313 212 24 24 chr6 23313531 23313616 -165965938 - MIR3 SINE MIR -51 157 73 202 0 0 83 chr6 23314358 23314394 -165965160 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 2425 90 0 3 chr6 23314396 23314708 -165964846 - AluY SINE Alu 0 311 1 2301 104 3 0 chr6 23314711 23315008 -165964546 - AluSp SINE Alu -15 298 1 292 116 23 0 chr6 23315834 23315877 -165963677 + MSTA LTR MaLR 1 44 -382 758 116 27 0 chr6 23315877 23315989 -165963565 + AluSq/x SINE Alu 24 138 -174 2008 143 62 0 chr6 23315998 23316320 -165963234 + MSTA LTR MaLR 87 428 0 1822 148 46 11 chr6 23316560 23316844 -165962710 + AluSx SINE Alu 1 294 -18 510 289 83 63 chr6 23316870 23317233 -165962321 + HAL1 LINE L1 337 706 -1801 1479 200 31 109 chr6 23317240 23317398 -165962156 + MLT1D LTR MaLR 26 195 -310 2353 113 0 0 chr6 23317398 23317708 -165961846 - AluSq SINE Alu -3 310 1 1479 200 31 109 chr6 23317708 23317737 -165961817 + MLT1D LTR MaLR 195 225 -280 2297 95 0 3 chr6 23317737 23318032 -165961522 + AluSg SINE Alu 1 294 -16 1479 200 31 109 chr6 23318032 23318140 -165961414 + MLT1D LTR MaLR 225 340 -165 2421 99 0 0 chr6 23318140 23318443 -165961111 + AluSq SINE Alu 1 303 -10 1479 200 31 109 chr6 23318443 23318666 -165960888 + MLT1D LTR MaLR 340 505 0 379 302 126 9 chr6 23318666 23318888 -165960666 + HAL1 LINE L1 706 953 -1554 2270 99 7 0 chr6 23318935 23319237 -165960317 + AluSx SINE Alu 1 304 -8 459 242 57 50 chr6 23319269 23319373 -165960181 + HAL1 LINE L1 961 1063 -1444 1912 116 35 18 chr6 23319373 23319657 -165959897 + AluJo SINE Alu 1 289 -23 459 242 57 50 chr6 23319657 23319833 -165959721 + HAL1 LINE L1 1063 1243 -1264 389 113 0 0 chr6 23319834 23319887 -165959667 + AluSg/x SINE Alu 76 128 -172 2172 130 0 3 chr6 23319887 23320186 -165959368 + AluSx SINE Alu 1 298 -14 1671 52 0 5 chr6 23320284 23320495 -165959059 - AluY SINE Alu -5 306 97 1145 266 143 66 chr6 23320515 23321200 -165958354 + HAL1 LINE L1 1473 2210 -297 1713 229 122 12 chr6 23321232 23321726 -165957828 + MLT1H LTR MaLR 1 548 -1 180 111 0 0 chr6 23321726 23321753 -165957801 + (TG)n Simple_repeat Simple_repeat 2 28 0 1342 93 71 0 chr6 23321812 23321994 -165957560 - AluSg/x SINE Alu -10 302 108 337 247 21 0 chr6 23322952 23323045 -165956509 - MIR3 SINE MIR -6 202 108 322 294 94 12 chr6 23324018 23324188 -165955366 - MIR SINE MIR -20 242 59 5708 105 13 5 chr6 23324512 23325340 -165954214 + L1PA16 LINE L1 5332 6166 0 2621 60 0 13 chr6 23325453 23325767 -165953787 - AluY SINE Alu -1 310 1 1815 177 16 47 chr6 23326210 23326733 -165952821 + L1MB2 LINE L1 5647 6125 -46 227 143 0 41 chr6 23326785 23326834 -165952720 + L1MB5 LINE L1 6096 6142 -32 485 153 0 0 chr6 23326834 23326906 -165952648 + AluJ/FRAM SINE Alu 221 292 -20 2043 128 4 0 chr6 23327051 23327332 -165952222 - AluSx SINE Alu -13 299 18 2482 42 0 3 chr6 23328219 23328536 -165951018 + AluY SINE Alu 1 316 0 1506 201 108 31 chr6 23328621 23329047 -165950507 - MLT1C LTR MaLR -2 465 17 195 263 81 61 chr6 23329297 23329396 -165950158 - MIR SINE MIR -90 118 18 1741 157 31 20 chr6 23330489 23330782 -165948772 - AluJo SINE Alu -16 296 1 401 337 121 8 chr6 23331367 23331723 -165947831 - L2 LINE L2 -941 2373 1978 200 247 0 110 chr6 23331823 23331896 -165947658 + L2 LINE L2 2244 2308 -1006 1188 210 14 0 chr6 23332192 23332411 -165947143 - MER58A DNA MER1_type -2 222 1 207 139 0 0 chr6 23332625 23332661 -165946893 + (TG)n Simple_repeat Simple_repeat 1 36 0 1616 174 10 41 chr6 23332661 23332955 -165946599 - AluJo SINE Alu -27 285 1 2401 100 3 0 chr6 23332976 23333285 -165946269 - AluSx SINE Alu -2 310 1 2094 113 19 10 chr6 23334578 23334887 -165944667 - AluSx SINE Alu 0 312 1 2241 118 0 0 chr6 23335430 23335735 -165943819 - AluSx SINE Alu -7 305 1 696 167 161 6 chr6 23335742 23335922 -165943632 - L1MD3 LINE L1 0 7995 7788 867 158 12 18 chr6 23337494 23337658 -165941896 + L1MB3 LINE L1 6021 6183 0 253 245 147 59 chr6 23337708 23337810 -165941744 + L2 LINE L2 3183 3293 -20 264 244 126 50 chr6 23340872 23340991 -165938563 + L3 LINE CR1 1375 1502 -75 1937 252 50 33 chr6 23341022 23341242 -165938312 + MLT1E LTR MaLR 2 217 -376 3713 114 32 31 chr6 23341242 23341666 -165937888 + MER41C LTR ERV1 1 423 -131 2049 133 0 41 chr6 23341666 23341983 -165937571 - AluSx SINE Alu -8 304 1 2456 73 0 3 chr6 23341988 23342290 -165937264 - AluY SINE Alu -10 301 1 3713 114 32 31 chr6 23342290 23342412 -165937142 + MER41C LTR ERV1 426 554 0 1937 252 50 33 chr6 23342412 23342770 -165936784 + MLT1E LTR MaLR 217 590 -3 2267 140 25 68 chr6 23344094 23344538 -165935016 - L1MB5 LINE L1 -2 6172 5748 208 353 29 0 chr6 23346415 23346483 -165933071 - L3 LINE CR1 -84 1493 1424 1653 184 110 60 chr6 23346633 23346977 -165932577 - MLT1C LTR MaLR -8 459 87 2165 147 0 0 chr6 23346977 23347289 -165932265 - AluSx SINE Alu 0 312 1 1653 184 110 60 chr6 23347289 23347379 -165932175 - MLT1C LTR MaLR -380 87 3 2196 114 30 0 chr6 23349047 23349346 -165930208 + AluSc SINE Alu 1 308 -1 2231 61 0 31 chr6 23349346 23349667 -165929887 + AluY SINE Alu 1 313 0 798 258 103 66 chr6 23349681 23349755 -165929799 - L1ME4a LINE L1 -11 6110 6040 2319 77 10 17 chr6 23349755 23350053 -165929501 - AluSg1 SINE Alu -13 296 1 798 258 103 66 chr6 23350053 23350404 -165929150 - L1ME4a LINE L1 -81 6040 5669 1513 186 37 77 chr6 23350654 23350844 -165928710 - MLT1B LTR MaLR 0 390 223 2946 138 17 0 chr6 23350844 23351264 -165928290 - MSTC LTR MaLR -1 427 1 1513 186 37 77 chr6 23351264 23351476 -165928078 - MLT1B LTR MaLR -167 223 4 242 214 0 0 chr6 23351627 23351683 -165927871 - HAL1 LINE L1 -2 2505 2450 582 208 150 77 chr6 23351724 23352034 -165927520 - MLT1E1 LTR MaLR -263 330 43 935 259 95 45 chr6 23352341 23352820 -165926734 - HAL1 LINE L1 -973 1534 1026 4288 110 64 0 chr6 23352820 23353395 -165926159 + LTR9 LTR ERV1 1 612 0 935 259 95 45 chr6 23353395 23353429 -165926125 - HAL1 LINE L1 -1481 1026 995 245 343 30 49 chr6 23353563 23353828 -165925726 - HAL1 LINE L1 -2111 396 137 2379 87 0 10 chr6 23355958 23356268 -165923286 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr6 23356367 23356392 -165923162 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 81 65 chr6 23356693 23356816 -165922738 + MIR3 SINE MIR 84 208 0 466 178 0 19 chr6 23357852 23357959 -165921595 + CT-rich Low_complexity Low_complexity 2 106 0 887 278 45 36 chr6 23358865 23359410 -165920144 + L1MEc LINE L1 1774 2279 -3936 3646 142 42 30 chr6 23359436 23359638 -165919916 + L1MA7 LINE L1 5620 5818 -473 2246 104 0 3 chr6 23359638 23359945 -165919609 + AluY SINE Alu 2 307 -4 3646 142 42 30 chr6 23359945 23360083 -165919471 + L1MA7 LINE L1 5818 5953 -338 2531 55 0 13 chr6 23360083 23360395 -165919159 + AluY SINE Alu 1 308 -3 3646 142 42 30 chr6 23360395 23360717 -165918837 + L1MA7 LINE L1 5953 6291 0 7286 208 81 76 chr6 23360741 23361233 -165918321 + L1MB8 LINE L1 2983 3471 -2707 2150 115 121 0 chr6 23361233 23361555 -165917999 - MER46B DNA MER2_type 0 236 1 7286 208 81 76 chr6 23361555 23363347 -165916207 + L1MB8 LINE L1 3471 5284 -894 234 0 0 0 chr6 23363347 23363373 -165916181 + (TC)n Simple_repeat Simple_repeat 1 26 0 7286 208 81 76 chr6 23363373 23364267 -165915287 + L1MB8 LINE L1 5284 6172 -6 1878 158 0 11 chr6 23364278 23364588 -165914966 - AluSx SINE Alu 0 307 1 541 307 52 44 chr6 23365385 23365561 -165913993 - MARNA DNA Mariner -17 569 396 1816 122 0 8 chr6 23365561 23365815 -165913739 - AluSg SINE Alu -36 274 23 541 307 52 44 chr6 23365815 23366000 -165913554 - MARNA DNA Mariner -190 396 205 1907 163 0 7 chr6 23366029 23366324 -165913230 - AluJo SINE Alu -19 293 1 180 0 0 0 chr6 23366659 23366679 -165912875 + (TA)n Simple_repeat Simple_repeat 1 20 0 2305 128 6 0 chr6 23366685 23367013 -165912541 - L1PA16 LINE L1 -9 6157 5828 908 202 0 16 chr6 23367014 23367197 -165912357 + L1P4 LINE L1 5611 5790 -376 2229 121 3 0 chr6 23367889 23368195 -165911359 - AluSx SINE Alu -5 307 1 1897 146 7 7 chr6 23369851 23370146 -165909408 - AluJo SINE Alu -17 295 1 199 333 123 0 chr6 23370266 23370347 -165909207 + L2 LINE L2 3206 3296 -17 653 302 27 18 chr6 23370407 23370629 -165908925 + MIR SINE MIR 5 228 -34 797 154 79 106 chr6 23371619 23371925 -165907629 + MLT1C LTR MaLR 1 269 -198 241 213 0 0 chr6 23372079 23372126 -165907428 - L2 LINE L2 -5 3267 3221 338 307 37 12 chr6 23372136 23372299 -165907255 - L2 LINE L2 -2660 654 488 1000 204 11 11 chr6 23372340 23372526 -165907028 - MER5A DNA MER1_type 0 189 4 1605 159 22 57 chr6 23372557 23372871 -165906683 - AluJo SINE Alu -9 303 1 1828 162 97 43 chr6 23372958 23373328 -165906226 + MLT1B LTR MaLR 1 390 0 248 199 103 73 chr6 23373469 23373605 -165905949 - L1MEd LINE L1 -5932 187 48 370 323 10 0 chr6 23373736 23373835 -165905719 - MIR SINE MIR -59 149 50 1975 138 0 7 chr6 23373904 23374202 -165905352 + AluJb SINE Alu 1 296 -16 23 0 0 0 chr6 23374202 23374225 -165905329 + AT_rich Low_complexity Low_complexity 1 23 0 398 217 56 13 chr6 23425358 23425556 -165853998 - MLT1D LTR MaLR -2 503 250 2391 97 0 0 chr6 23425599 23425898 -165853656 - AluSx SINE Alu -13 299 1 1519 218 19 22 chr6 23425899 23426266 -165853288 - L1P LINE L1 -1117 5029 4664 4245 115 25 8 chr6 23426266 23426907 -165852647 + L1PA15 LINE L1 5362 6013 -152 949 95 0 0 chr6 23426908 23427034 -165852520 + AluSp/q SINE Alu 185 310 -3 917 244 91 5 chr6 23427035 23427444 -165852110 + L1 LINE L1 4955 5398 -748 2255 161 7 27 chr6 23427633 23428044 -165851510 + MER57A LTR ERV1 1 403 0 231 247 39 13 chr6 23428672 23428749 -165850805 + MER65A LTR ERV1 257 335 -110 780 158 47 0 chr6 23428867 23428994 -165850560 + LTR54 LTR ERV1 67 199 -311 22 0 0 0 chr6 23430131 23430153 -165849401 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr6 23430222 23430256 -165849298 + (CATA)n Simple_repeat Simple_repeat 3 36 0 2011 113 21 11 chr6 23430262 23430545 -165849009 - AluSx SINE Alu -26 286 1 2372 80 0 7 chr6 23430545 23430845 -165848709 - AluSq SINE Alu -15 298 1 743 311 29 10 chr6 23430852 23431161 -165848393 - L1MC4a LINE L1 -1983 5825 5511 219 171 0 0 chr6 23431603 23431644 -165847910 + L2 LINE L2 3272 3312 -1 447 271 76 3 chr6 23432429 23432579 -165846975 - MIR3 SINE MIR -29 179 21 282 160 20 0 chr6 23432673 23432723 -165846831 - L1ME3A LINE L1 -105 6065 6015 916 181 11 17 chr6 23432891 23433068 -165846486 - AluJo SINE Alu -132 180 5 339 284 0 12 chr6 23433072 23433153 -165846401 - LTR8A LTR ERV1 -361 366 287 1701 197 3 16 chr6 23433283 23433420 -165846134 + AluJb SINE Alu 1 138 -174 2298 118 0 6 chr6 23433420 23433734 -165845820 + AluSx SINE Alu 1 312 0 1701 197 3 16 chr6 23433734 23433911 -165845643 + AluJb SINE Alu 138 311 -1 1640 161 149 14 chr6 23434110 23434465 -165845089 - MER61A-int LTR ERV1 -4812 405 3 1676 190 61 9 chr6 23434467 23434793 -165844761 - MER61A LTR ERV1 0 343 1 1007 163 150 26 chr6 23434793 23435026 -165844528 + AluJb SINE Alu 31 292 -20 1810 53 8 8 chr6 23435730 23435973 -165843581 - AluY SINE Alu -30 281 39 1013 81 0 7 chr6 23435974 23436110 -165843444 - AluSq/x SINE Alu -178 135 1 606 263 69 65 chr6 23439010 23439257 -165840297 - MIR SINE MIR -10 252 5 686 255 11 27 chr6 23439336 23439520 -165840034 + MLT1J1 LTR MaLR 4 184 -262 2284 121 34 14 chr6 23439567 23439923 -165839631 + THE1B LTR MaLR 1 363 -1 325 191 48 0 chr6 23440102 23440165 -165839389 - LTR33A LTR ERVL 0 523 458 548 208 26 106 chr6 23440355 23440620 -165838934 - L1MC4a LINE L1 -2311 5497 5254 225 186 0 0 chr6 23440959 23441002 -165838552 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 271 270 11 11 chr6 23441183 23441272 -165838282 - L1MC4a LINE L1 -1326 4820 4732 675 292 118 37 chr6 23441660 23442043 -165837511 + MLT1J2 LTR MaLR 3 416 -34 2359 155 16 3 chr6 23442071 23442457 -165837097 + Tigger1 DNA MER2_type 24 414 -2004 505 146 0 0 chr6 23444479 23444561 -165834993 + L1P LINE L1 4480 4561 -1585 360 60 0 0 chr6 23444561 23444608 -165834946 + L1PA7 LINE L1 6104 6153 -1 1156 115 50 6 chr6 23444608 23444788 -165834766 + L1PA8A LINE L1 5937 6126 -5 2678 51 12 0 chr6 23444890 23445221 -165834333 - L1PA5 LINE L1 -4 6150 5816 1161 208 13 40 chr6 23445221 23445524 -165834030 + pTR5 LTR ERV1 744 1038 -1400 197 273 0 0 chr6 23447141 23447196 -165832358 + L3b LINE CR1 1383 1437 -146 1023 110 0 78 chr6 23447382 23447573 -165831981 - AluSp SINE Alu 0 313 138 2086 110 3 0 chr6 23448629 23448929 -165830625 - AluSp SINE Alu -12 301 1 1452 193 27 0 chr6 23449325 23449621 -165829933 - AluSx SINE Alu -4 308 5 212 291 0 38 chr6 23449755 23449834 -165829720 - MIR SINE MIR -75 133 58 759 156 7 21 chr6 23450448 23450589 -165828965 - L1MB3 LINE L1 -1 6182 6044 4005 124 17 10 chr6 23450848 23451482 -165828072 - MER39B LTR ERV1 0 625 1 7524 128 4 6 chr6 23451975 23453100 -165826454 - MER61-int LTR ERV1 -430 4787 3665 7839 115 80 1 chr6 23453200 23454723 -165824831 + L1P3 LINE L1 3943 5592 -562 388 115 33 0 chr6 23454827 23454888 -165824666 + AluS SINE Alu 231 293 -7 230 239 80 45 chr6 23455009 23455097 -165824457 - MIR SINE MIR -62 200 110 189 178 0 0 chr6 23455204 23455249 -165824305 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 23455641 23455674 -165823880 + AT_rich Low_complexity Low_complexity 1 33 0 494 285 39 43 chr6 23456256 23456463 -165823091 - MIR SINE MIR 0 262 57 257 299 0 31 chr6 23457114 23457240 -165822314 - AluSp/q SINE Alu 0 314 192 1210 215 16 8 chr6 23457784 23458030 -165821524 - AluJo SINE Alu -30 282 35 539 125 71 18 chr6 23458413 23458533 -165821021 + LTR49-int LTR ERV1 3118 4384 -1883 805 195 40 49 chr6 23458574 23458800 -165820754 + LTR49-int LTR ERV1 4567 4790 -1541 916 148 14 0 chr6 23458801 23458943 -165820611 - AluJb SINE Alu -25 287 144 279 0 0 0 chr6 23459923 23459954 -165819600 + (CA)n Simple_repeat Simple_repeat 2 32 0 1462 182 3 13 chr6 23459983 23460285 -165819269 - AluSq SINE Alu -14 299 1 345 102 0 0 chr6 23461448 23461507 -165818047 + (TTTTG)n Simple_repeat Simple_repeat 3 61 0 420 219 0 0 chr6 23462086 23462168 -165817386 - AluJb SINE Alu -52 260 179 27 0 0 0 chr6 23462189 23462216 -165817338 + AT_rich Low_complexity Low_complexity 1 27 0 1970 159 38 9 chr6 23462290 23462635 -165816919 + MLT1A1 LTR MaLR 11 365 0 462 158 42 0 chr6 23462635 23462730 -165816824 - L1M4 LINE L1 -811 5335 5237 359 154 0 46 chr6 23462917 23462982 -165816572 + AluJ/FRAM SINE Alu 231 292 -10 503 156 0 0 chr6 23463241 23463337 -165816217 + AluSg/x SINE Alu 214 309 0 458 268 49 33 chr6 23463390 23463573 -165815981 + LTR67 LTR ERVL 372 557 0 264 248 13 131 chr6 23463608 23463761 -165815793 - L2 LINE L2 -222 3050 2916 1150 139 0 0 chr6 23464057 23464230 -165815324 - AluJb SINE Alu -10 302 130 1503 190 3 19 chr6 23464567 23464878 -165814676 + AluJo SINE Alu 3 308 -4 2898 186 6 40 chr6 23467107 23467642 -165811912 - L1MCa LINE L1 -3259 3167 2616 2053 142 0 0 chr6 23467642 23467953 -165811601 + AluSq SINE Alu 1 311 -2 2898 186 6 40 chr6 23467953 23467989 -165811565 - L1MCa LINE L1 -3810 2616 2616 2305 93 0 3 chr6 23467989 23468299 -165811255 + AluSx SINE Alu 2 310 -2 2898 186 6 40 chr6 23468299 23468351 -165811203 - L1MCa LINE L1 -3810 2616 2564 557 212 159 59 chr6 23468518 23468753 -165810801 - MLT1H1 LTR MaLR -11 544 250 698 229 22 18 chr6 23469147 23469370 -165810184 + MER20B DNA MER1_type 544 767 -16 186 283 0 0 chr6 23469737 23469783 -165809771 + L2 LINE L2 3264 3309 -4 279 0 0 0 chr6 23471769 23471800 -165807754 + (T)n Simple_repeat Simple_repeat 1 31 0 530 208 77 24 chr6 23473685 23473853 -165805701 + MER104 DNA MER2_type 1 177 -3 1801 125 27 27 chr6 23474835 23475132 -165804422 - AluSx SINE Alu -15 297 1 410 228 118 24 chr6 23475234 23475361 -165804193 - MIR SINE MIR -7 255 117 239 170 0 19 chr6 23476251 23476304 -165803250 + (CA)n Simple_repeat Simple_repeat 1 52 0 198 71 0 0 chr6 23477069 23477097 -165802457 + (GA)n Simple_repeat Simple_repeat 1 28 0 213 250 0 0 chr6 23477812 23477904 -165801650 + (CGG)n Simple_repeat Simple_repeat 1 92 0 212 241 13 13 chr6 23478023 23478102 -165801452 + (CCG)n Simple_repeat Simple_repeat 1 79 0 209 123 0 53 chr6 23478473 23478530 -165801024 + (TCC)n Simple_repeat Simple_repeat 1 54 0 290 221 12 23 chr6 23478802 23478888 -165800666 + A-rich Low_complexity Low_complexity 5 89 0 297 75 0 0 chr6 23479766 23479806 -165799748 + (A)n Simple_repeat Simple_repeat 1 40 0 313 193 272 9 chr6 23480240 23480354 -165799200 - L1MCa LINE L1 -4065 2361 2218 22 0 0 0 chr6 23480406 23480428 -165799126 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 23483587 23483613 -165795941 + AT_rich Low_complexity Low_complexity 1 26 0 2171 110 0 0 chr6 23483629 23483928 -165795626 + AluSx SINE Alu 1 299 -13 268 429 30 5 chr6 23484560 23484763 -165794791 + MIR SINE MIR 47 254 -8 204 235 161 12 chr6 23484764 23484845 -165794709 + MIR SINE MIR 157 249 -13 365 288 159 18 chr6 23485261 23485424 -165794130 + MER5A DNA MER1_type 1 186 -3 246 311 93 34 chr6 23485447 23485598 -165793956 - MIR SINE MIR -58 150 28 2020 133 3 10 chr6 23485763 23486064 -165793490 + AluSq SINE Alu 1 299 -14 279 0 0 0 chr6 23486093 23486124 -165793430 + (TG)n Simple_repeat Simple_repeat 2 32 0 2159 103 3 27 chr6 23488453 23488589 -165790965 + AluSx SINE Alu 1 139 -173 2149 53 0 8 chr6 23488589 23488851 -165790703 + AluY SINE Alu 39 298 -13 2378 98 0 0 chr6 23488853 23489150 -165790404 + AluSc SINE Alu 1 297 -12 2159 103 3 27 chr6 23489150 23489311 -165790243 + AluSx SINE Alu 140 294 -18 1678 163 32 4 chr6 23490539 23490816 -165788738 - AluJb SINE Alu -26 286 2 2261 90 10 0 chr6 23490887 23491177 -165788377 + AluSp SINE Alu 1 293 -20 2280 75 7 0 chr6 23491188 23491492 -165788062 + AluSc SINE Alu 1 306 0 1333 186 80 22 chr6 23491616 23491927 -165787627 + MER61B LTR ERV1 1 421 -4 1501 116 0 18 chr6 23491927 23492152 -165787402 - pTR5 LTR ERV1 -2046 392 172 308 281 10 0 chr6 23492155 23492251 -165787303 - LTR30 LTR ERV1 -80 642 546 4077 128 196 24 chr6 23492257 23493245 -165786309 - pTR5 LTR ERV1 -417 2021 719 450 0 0 0 chr6 23493591 23493641 -165785913 + (CATAA)n Simple_repeat Simple_repeat 3 52 0 22 35 0 0 chr6 23493749 23493778 -165785776 + AT_rich Low_complexity Low_complexity 1 29 0 2331 88 3 3 chr6 23493851 23494147 -165785407 - AluSp SINE Alu -17 296 1 706 170 0 28 chr6 23495677 23495818 -165783736 - MER96B DNA MER1_type? -182 235 99 2175 93 25 0 chr6 23495818 23496098 -165783456 + AluSx SINE Alu 1 287 -25 239 73 59 29 chr6 23496105 23496173 -165783381 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 234 232 18 0 chr6 23496188 23496244 -165783310 + MER96B DNA MER1_type? 321 377 -40 309 299 10 99 chr6 23496412 23496613 -165782941 - MER5A DNA MER1_type 0 189 7 333 0 0 0 chr6 23498299 23498336 -165781218 + (CA)n Simple_repeat Simple_repeat 2 38 0 2175 120 7 7 chr6 23499257 23499566 -165779988 - AluSx SINE Alu -3 309 1 414 208 201 19 chr6 23499715 23499751 -165779803 - MIR SINE MIR -9 253 225 204 40 0 0 chr6 23499751 23499776 -165779778 + (TA)n Simple_repeat Simple_repeat 1 25 0 414 208 201 19 chr6 23499776 23499898 -165779656 - MIR SINE MIR -37 225 66 1683 152 61 10 chr6 23499903 23500200 -165779354 + AluJb SINE Alu 1 312 0 1708 161 41 21 chr6 23500374 23500665 -165778889 - AluJb SINE Alu -15 297 1 2153 130 0 7 chr6 23501021 23501322 -165778232 + AluSx SINE Alu 1 299 -13 2325 96 3 3 chr6 23501926 23502227 -165777327 + AluSx SINE Alu 1 301 -11 4348 140 103 14 chr6 23502815 23503708 -165775846 - MER52C LTR ERV1 0 1278 1 1586 181 0 28 chr6 23503911 23504199 -165775355 + AluJo SINE Alu 2 281 -31 189 0 0 0 chr6 23504202 23504223 -165775331 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 519 240 96 7 chr6 23504344 23504490 -165775064 - MLT1L LTR MaLR -36 579 421 2170 132 0 7 chr6 23504675 23504978 -165774576 - AluSx SINE Alu -11 301 1 2282 114 3 0 chr6 23504979 23505278 -165774276 - AluSp SINE Alu -7 306 7 2429 80 0 3 chr6 23505409 23505710 -165773844 + AluY SINE Alu 3 302 -9 2251 123 0 3 chr6 23505935 23506243 -165773311 + AluSx SINE Alu 1 307 -5 673 309 79 70 chr6 23506678 23506772 -165772782 + L2 LINE L2 1841 1933 -1381 1853 176 0 13 chr6 23506772 23507079 -165772475 - AluJo SINE Alu -9 303 1 673 309 79 70 chr6 23507079 23507722 -165771832 + L2 LINE L2 1933 2588 -726 2495 60 0 7 chr6 23507722 23508024 -165771530 + AluY SINE Alu 1 300 -11 673 309 79 70 chr6 23508024 23508096 -165771458 + L2 LINE L2 2588 2658 -656 2253 104 3 3 chr6 23508143 23508440 -165771114 - AluSx SINE Alu -15 297 1 1795 157 54 7 chr6 23508442 23508736 -165770818 - AluJo SINE Alu -4 308 1 2054 116 0 0 chr6 23508828 23509104 -165770450 + AluSx SINE Alu 35 310 -2 2502 65 0 10 chr6 23510090 23510398 -165769156 + AluY SINE Alu 1 305 -6 1696 97 124 16 chr6 23510713 23510970 -165768584 + AluSg SINE Alu 1 285 -25 2202 66 30 20 chr6 23511878 23512180 -165767374 - AluY SINE Alu -5 306 2 614 318 138 17 chr6 23512237 23512387 -165767167 + L2 LINE L2 2434 2564 -749 2354 87 0 10 chr6 23512387 23512698 -165766856 - AluSc SINE Alu -1 308 1 614 318 138 17 chr6 23512698 23513044 -165766510 + L2 LINE L2 2564 3002 -311 253 297 0 69 chr6 23513163 23513264 -165766290 + L2 LINE L2 3218 3311 -2 214 229 0 29 chr6 23513321 23513391 -165766163 + (TA)n Simple_repeat Simple_repeat 2 69 0 2596 55 3 3 chr6 23513487 23513798 -165765756 + AluY SINE Alu 1 311 0 24 0 0 0 chr6 23514269 23514293 -165765261 + AT_rich Low_complexity Low_complexity 1 24 0 545 194 70 74 chr6 23514293 23514407 -165765147 - MER113 DNA MER1_type? -277 244 131 2701 36 0 3 chr6 23514407 23514715 -165764839 + AluY SINE Alu 1 307 -4 440 35 17 0 chr6 23514715 23514773 -165764781 + (TA)n Simple_repeat Simple_repeat 2 60 0 2273 110 7 0 chr6 23514780 23515079 -165764475 + AluSp SINE Alu 1 301 -12 545 194 70 74 chr6 23515079 23515197 -165764357 - MER113 DNA MER1_type? -395 126 4 714 234 122 11 chr6 23515216 23515494 -165764060 - MER5C DNA MER1_type -15 309 1 2128 131 0 3 chr6 23515653 23515951 -165763603 - AluSx SINE Alu -15 297 1 1702 109 4 0 chr6 23516023 23516287 -165763267 + AluSg/x SINE Alu 69 312 0 1237 117 0 0 chr6 23516463 23516634 -165762920 + AluSg/x SINE Alu 134 304 -8 2104 125 3 0 chr6 23516924 23517221 -165762333 - AluSq SINE Alu -15 298 1 2169 126 13 0 chr6 23517882 23518191 -165761363 - AluSq SINE Alu 0 313 1 1585 176 11 21 chr6 23518465 23518749 -165760805 + AluJb SINE Alu 1 281 -31 229 0 26 53 chr6 23518752 23518790 -165760764 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2553 68 0 0 chr6 23518939 23519246 -165760308 + AluSc SINE Alu 1 307 -2 2302 108 0 3 chr6 23519251 23519557 -165759997 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr6 23519830 23519851 -165759703 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 23520496 23520524 -165759030 + AT_rich Low_complexity Low_complexity 1 28 0 450 53 0 0 chr6 23520528 23520585 -165758969 + (TA)n Simple_repeat Simple_repeat 2 58 0 2085 117 13 13 chr6 23520587 23520895 -165758659 - AluSg SINE Alu 0 310 3 1835 134 42 3 chr6 23520899 23521183 -165758371 - AluJb SINE Alu -17 295 1 2204 114 0 10 chr6 23521398 23521697 -165757857 - AluSg SINE Alu -13 297 2 551 274 71 63 chr6 23522338 23522567 -165756987 - L1M4 LINE L1 -1983 4163 3937 1883 86 4 0 chr6 23522567 23522832 -165756722 - AluSc SINE Alu 0 312 47 551 274 71 63 chr6 23522832 23523108 -165756446 - L1M4 LINE L1 -2209 3937 3653 2505 67 0 16 chr6 23523130 23523444 -165756110 - AluY SINE Alu -2 309 1 2433 100 0 0 chr6 23523454 23523764 -165755790 - AluSg SINE Alu 0 310 1 871 191 22 16 chr6 23523764 23523939 -165755615 - AluJo SINE Alu -14 298 120 734 170 7 0 chr6 23524015 23524162 -165755392 + CT-rich Low_complexity Low_complexity 1 148 0 1483 131 0 0 chr6 23524162 23524368 -165755186 - AluSg/x SINE Alu -10 300 95 10286 113 26 20 chr6 23524368 23525319 -165754235 + Tigger1 DNA MER2_type 465 1408 -1010 2315 90 0 0 chr6 23525319 23525618 -165753936 - AluY SINE Alu -12 299 1 10286 113 26 20 chr6 23525618 23525882 -165753672 + Tigger1 DNA MER2_type 1408 1669 -749 2141 110 28 0 chr6 23525882 23526172 -165753382 + AluSg SINE Alu 1 298 -12 10286 113 26 20 chr6 23526172 23526538 -165753016 + Tigger1 DNA MER2_type 1669 2058 -360 837 125 16 0 chr6 23526538 23526666 -165752888 - AluSg SINE Alu -7 302 173 952 85 0 0 chr6 23526666 23526784 -165752770 - AluSg SINE Alu -192 118 1 2354 114 29 0 chr6 23526784 23527126 -165752428 + Tigger1 DNA MER2_type 2064 2415 -3 1007 233 8 16 chr6 23527261 23527506 -165752048 - L1M4 LINE L1 -1191 4955 4713 2224 97 30 0 chr6 23527799 23528097 -165751457 + AluSq SINE Alu 1 307 -6 366 302 181 25 chr6 23528119 23528440 -165751114 - L1MDa LINE L1 -4588 1541 1171 36 17 0 35 chr6 23528486 23528526 -165751028 + AT_rich Low_complexity Low_complexity 1 40 -16 2165 116 7 0 chr6 23528526 23528818 -165750736 + AluSg1 SINE Alu 1 294 -15 36 17 0 35 chr6 23528818 23528835 -165750719 + AT_rich Low_complexity Low_complexity 40 56 0 332 281 82 41 chr6 23528854 23528939 -165750615 - L1MDa LINE L1 -4952 1167 1087 2038 141 0 0 chr6 23528939 23529245 -165750309 - AluSg SINE Alu -4 306 1 332 281 82 41 chr6 23529245 23529355 -165750199 - L1MDa LINE L1 -5032 1087 964 484 264 39 8 chr6 23529457 23529586 -165749968 + LTR16C LTR ERVL 151 283 -208 403 194 28 0 chr6 23529609 23529681 -165749873 - AluS SINE Alu -235 76 3 274 305 146 37 chr6 23530043 23530236 -165749318 + MIR SINE MIR 38 249 -13 1786 96 115 11 chr6 23530929 23531199 -165748355 - AluSg SINE Alu -12 298 1 1127 127 16 16 chr6 23531199 23531380 -165748174 + L1MB3 LINE L1 5999 6182 -1 189 0 0 0 chr6 23531500 23531521 -165748033 + (T)n Simple_repeat Simple_repeat 1 21 0 2115 120 3 31 chr6 23531847 23532028 -165747526 - AluSq SINE Alu -5 308 138 2468 49 0 13 chr6 23532028 23532333 -165747221 - AluY SINE Alu -10 301 1 2115 120 3 31 chr6 23532333 23532468 -165747086 - AluSq SINE Alu -175 138 1 292 335 135 16 chr6 23533623 23533927 -165745627 + L3 LINE CR1 496 835 -742 372 259 0 12 chr6 23533993 23534078 -165745476 - L2 LINE L2 -8 3264 3181 2506 114 7 88 chr6 23534117 23534375 -165745179 - MSTA LTR MaLR 0 428 223 2212 86 7 0 chr6 23534375 23534653 -165744901 - AluSp SINE Alu -13 300 21 2506 114 7 88 chr6 23534653 23534859 -165744695 - MSTA LTR MaLR -205 223 2 1241 194 28 127 chr6 23535331 23535593 -165743961 - MLT1B LTR MaLR 0 390 177 2535 59 0 3 chr6 23535593 23535896 -165743658 - AluY SINE Alu -9 302 1 1241 194 28 127 chr6 23535896 23536020 -165743534 - MLT1B LTR MaLR -213 177 42 1839 207 65 59 chr6 23536023 23536516 -165743038 + MLT2B3 LTR ERVL 5 500 -54 4414 105 25 6 chr6 23536526 23537155 -165742399 - LTR9B LTR ERV1 -2 642 2 462 73 12 85 chr6 23537155 23537215 -165742339 + MLT2A2 LTR ERVL 400 453 0 317 128 0 0 chr6 23537215 23537262 -165742292 - MLT1B LTR MaLR -325 49 3 259 274 77 95 chr6 23537263 23537538 -165742016 - L2 LINE L2 -691 2623 2359 2287 84 0 26 chr6 23537538 23537847 -165741707 + AluSx SINE Alu 12 312 0 259 274 77 95 chr6 23537847 23538067 -165741487 - L2 LINE L2 -955 2359 2137 2166 134 0 0 chr6 23538145 23538451 -165741103 + AluSx SINE Alu 1 306 -6 1948 143 26 10 chr6 23539991 23540298 -165739256 + AluJb SINE Alu 1 312 0 181 261 102 83 chr6 23540552 23540676 -165738878 - MIR SINE MIR -26 236 107 2005 118 0 85 chr6 23540676 23540811 -165738743 + AluSx SINE Alu 1 146 -166 2511 47 0 31 chr6 23540811 23541132 -165738422 + AluY SINE Alu 1 311 0 2005 118 0 85 chr6 23541132 23541327 -165738227 + AluSx SINE Alu 146 303 -9 181 261 102 83 chr6 23541327 23541359 -165738195 - MIR SINE MIR -155 107 77 228 320 70 51 chr6 23541452 23541608 -165737946 - L2 LINE L2 -190 3082 2924 2602 42 0 10 chr6 23541899 23542206 -165737348 - AluY SINE Alu -7 304 1 263 248 64 28 chr6 23542365 23542474 -165737080 - MIR SINE MIR -26 236 124 2361 93 0 13 chr6 23542659 23542971 -165736583 - AluSg SINE Alu -2 308 1 1282 170 15 104 chr6 23542995 23543174 -165736380 - AluJo SINE Alu -6 306 169 192 77 0 0 chr6 23543174 23543200 -165736354 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1282 170 15 104 chr6 23543200 23543356 -165736198 - AluJo SINE Alu -143 169 1 222 37 0 0 chr6 23543358 23543385 -165736169 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2355 60 7 0 chr6 23543387 23543670 -165735884 - AluY SINE Alu -26 285 1 507 50 0 0 chr6 23543671 23543731 -165735823 - AluSq/x SINE Alu -168 145 86 1103 178 35 0 chr6 23543733 23543930 -165735624 - AluSx SINE Alu -108 204 1 335 296 56 0 chr6 23544155 23544263 -165735291 - MLT1I LTR MaLR -6 403 290 822 238 48 19 chr6 23544309 23544519 -165735035 - MLT1I LTR MaLR -192 217 2 2486 87 0 0 chr6 23544685 23544995 -165734559 + AluSx SINE Alu 1 310 -2 897 211 43 142 chr6 23545472 23545775 -165733779 - LTR16C LTR ERVL -2 489 240 2185 123 0 3 chr6 23545775 23546075 -165733479 - AluSx SINE Alu -13 299 1 897 211 43 142 chr6 23546075 23546208 -165733346 - LTR16C LTR ERVL -251 240 96 196 183 17 17 chr6 23549161 23549221 -165730333 + GA-rich Low_complexity Low_complexity 2 61 0 2359 95 10 0 chr6 23550613 23550917 -165728637 + AluSx SINE Alu 1 307 -5 262 311 20 22 chr6 23552528 23552668 -165726886 + MIR SINE MIR 63 199 -9 2349 94 3 0 chr6 23552756 23553064 -165726490 - AluSq SINE Alu -4 309 1 342 274 62 20 chr6 23553371 23553517 -165726037 + MIR SINE MIR 29 180 -82 2467 72 3 0 chr6 23554782 23555088 -165724466 - AluSp SINE Alu -6 307 1 2282 89 3 32 chr6 23555249 23555564 -165723990 - AluSg SINE Alu -4 306 1 2027 265 150 26 chr6 23555698 23556596 -165722958 - L2 LINE L2 0 3313 2216 2103 104 3 7 chr6 23556596 23556894 -165722660 - AluSx SINE Alu -15 297 1 2027 265 150 26 chr6 23556894 23557301 -165722253 - L2 LINE L2 -1097 2216 1861 2453 62 0 23 chr6 23557362 23557666 -165721888 + AluY SINE Alu 1 297 -14 230 344 15 15 chr6 23557711 23557842 -165721712 - MIR SINE MIR -50 212 82 2449 101 0 0 chr6 23558243 23558551 -165721003 - AluSg SINE Alu -2 308 1 2415 76 9 22 chr6 23558556 23558871 -165720683 - AluY SINE Alu 0 311 1 1192 139 10 57 chr6 23558891 23559100 -165720454 - AluSx SINE Alu -113 199 1 2039 97 27 40 chr6 23559214 23559512 -165720042 - AluSx SINE Alu -18 294 1 264 271 0 0 chr6 23559605 23559675 -165719879 - MLT1L LTR MaLR 0 615 546 221 189 0 0 chr6 23559675 23559712 -165719842 + T-rich Low_complexity Low_complexity 1 37 0 891 61 0 55 chr6 23559712 23559875 -165719679 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 255 271 17 0 chr6 23559895 23559954 -165719600 - MLT1L LTR MaLR -91 524 465 2223 104 0 13 chr6 23560002 23560300 -165719254 - AluSg1 SINE Alu -15 294 1 2005 222 22 89 chr6 23560334 23560421 -165719133 - L1MB7 LINE L1 -46 6138 6047 2551 74 0 0 chr6 23560421 23560730 -165718824 - AluY SINE Alu -2 309 1 2005 222 22 89 chr6 23560730 23561117 -165718437 - L1MB7 LINE L1 -137 6047 5636 2004 149 0 3 chr6 23561117 23561413 -165718141 + AluJb SINE Alu 1 295 -17 2005 222 22 89 chr6 23561413 23561505 -165718049 - L1MB7 LINE L1 -548 5636 5622 2351 105 0 6 chr6 23561505 23561820 -165717734 - AluSq SINE Alu 0 313 1 2005 222 22 89 chr6 23561820 23561935 -165717619 - L1MB7 LINE L1 -562 5622 5501 180 0 0 0 chr6 23562259 23562279 -165717275 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2261 89 0 0 chr6 23562279 23562559 -165716995 - AluSx SINE Alu -32 280 1 869 136 0 29 chr6 23562662 23562802 -165716752 + AluJb SINE Alu 1 136 -176 1668 171 19 23 chr6 23563532 23563842 -165715712 - AluJb SINE Alu -3 309 1 2277 113 3 0 chr6 23563937 23564238 -165715316 - AluSq SINE Alu -11 302 1 278 359 47 0 chr6 23564363 23564491 -165715063 - MIR SINE MIR -61 201 68 2591 71 0 0 chr6 23564703 23565014 -165714540 - AluY SINE Alu 0 311 1 1870 162 0 40 chr6 23565497 23565818 -165713736 - AluJo SINE Alu -4 308 1 2338 76 0 3 chr6 23565838 23566126 -165713428 - AluY SINE Alu -23 288 2 2171 117 0 0 chr6 23566285 23566568 -165712986 + AluSq SINE Alu 1 283 -30 37 39 0 0 chr6 23566572 23566623 -165712931 + AT_rich Low_complexity Low_complexity 1 51 0 2481 78 0 3 chr6 23566920 23567229 -165712325 + AluSg SINE Alu 1 308 -2 3362 113 14 67 chr6 23568551 23569107 -165710447 + MER1A DNA MER1_type 1 527 0 353 74 0 0 chr6 23569184 23569238 -165710316 - Alu SINE Alu 0 302 249 261 83 0 0 chr6 23569240 23569276 -165710278 + (A)n Simple_repeat Simple_repeat 1 36 0 1252 132 0 0 chr6 23569276 23569458 -165710096 + AluSg/x SINE Alu 129 310 -2 241 216 128 49 chr6 23569480 23569582 -165709972 - MER103 DNA DNA -14 152 43 2255 101 0 7 chr6 23569966 23570263 -165709291 + AluSc SINE Alu 1 295 -14 1089 203 198 44 chr6 23570610 23571044 -165708510 + MLT1D LTR MaLR 5 505 0 2751 36 0 0 chr6 23571398 23571705 -165707849 + AluY SINE Alu 1 307 -4 778 88 18 0 chr6 23572383 23572497 -165707057 - LTR9B LTR ERV1 -87 557 442 250 113 0 75 chr6 23573009 23573062 -165706492 + L2 LINE L2 3265 3313 0 996 151 158 58 chr6 23573198 23573489 -165706065 - MER33 DNA MER1_type 0 324 5 296 159 0 29 chr6 23573727 23573796 -165705758 + MIR SINE MIR 82 148 -114 2384 104 0 0 chr6 23573834 23574142 -165705412 - AluSx SINE Alu -4 308 1 2330 97 0 0 chr6 23576271 23576560 -165702994 - AluSc SINE Alu -20 289 1 835 123 0 0 chr6 23577574 23577696 -165701858 - MER41A LTR ERV1 0 554 433 1092 62 8 0 chr6 23577696 23577825 -165701729 + AluSq/x SINE Alu 3 132 -180 2386 95 0 3 chr6 23577827 23578133 -165701421 + AluSq SINE Alu 1 305 -8 2258 117 3 0 chr6 23578146 23578445 -165701109 + AluSx SINE Alu 1 300 -12 1181 106 6 0 chr6 23578447 23578608 -165700946 - MER41B LTR ERV1 -111 524 363 1621 125 20 128 chr6 23578608 23578953 -165700601 - AluYb8 SINE Alu 0 308 1 2141 131 0 10 chr6 23578953 23579258 -165700296 - AluSq SINE Alu -11 302 1 1978 128 82 33 chr6 23580353 23580427 -165699127 - MLT1B LTR MaLR -2 388 319 2196 94 3 7 chr6 23580427 23580715 -165698839 + AluSq SINE Alu 1 287 -26 1978 128 82 33 chr6 23580715 23581008 -165698546 - MLT1B LTR MaLR -71 319 3 2152 124 0 0 chr6 23581422 23581713 -165697841 - AluSx SINE Alu -21 291 1 1148 240 146 28 chr6 23581719 23582144 -165697410 - L1ME3A LINE L1 -5 6165 5691 1028 228 64 38 chr6 23582159 23582380 -165697174 - L1MA7 LINE L1 -4 6287 6073 2394 69 0 20 chr6 23582380 23582686 -165696868 - AluY SINE Alu -11 300 1 1028 228 64 38 chr6 23582686 23582890 -165696664 - L1MA7 LINE L1 -218 6073 5346 860 171 13 7 chr6 23582914 23583066 -165696488 + AluJb SINE Alu 140 292 -20 749 62 31 0 chr6 23583066 23583195 -165696359 + (TA)n Simple_repeat Simple_repeat 1 133 0 325 172 78 0 chr6 23583349 23583413 -165696141 - MER94 DNA DNA -65 69 1 267 347 97 0 chr6 23583468 23583592 -165695962 - L2 LINE L2 0 3272 3137 2305 101 3 0 chr6 23583603 23583899 -165695655 - AluSp SINE Alu -16 297 1 2336 56 62 0 chr6 23583899 23584187 -165695367 - AluY SINE Alu -5 306 1 213 250 14 83 chr6 23584746 23584818 -165694736 + L2 LINE L2 3204 3270 -2 2235 87 0 45 chr6 23584836 23584980 -165694574 + AluSx SINE Alu 3 127 -185 2382 59 31 0 chr6 23584980 23585267 -165694287 + AluY SINE Alu 2 297 -14 2235 87 0 45 chr6 23585267 23585432 -165694122 + AluSx SINE Alu 127 298 -14 365 291 12 42 chr6 23585678 23585843 -165693711 - L2 LINE L2 -205 3067 2908 2623 193 54 51 chr6 23586026 23586891 -165692663 + L1MC5 LINE L1 6990 7913 -48 26 50 0 0 chr6 23587026 23587066 -165692488 + AT_rich Low_complexity Low_complexity 1 40 0 330 224 43 26 chr6 23587109 23587225 -165692329 - L1ME4a LINE L1 -21 6100 5983 22 56 0 0 chr6 23587238 23587274 -165692280 + AT_rich Low_complexity Low_complexity 1 36 0 616 295 91 42 chr6 23587286 23587573 -165691981 - L1ME4a LINE L1 -233 5888 5616 2586 46 0 13 chr6 23587573 23587880 -165691674 - AluY SINE Alu -8 303 1 616 295 91 42 chr6 23587880 23588185 -165691369 - L1ME4a LINE L1 -505 5616 5267 2150 112 0 0 chr6 23588278 23588556 -165690998 + AluSx SINE Alu 2 279 -33 207 0 0 0 chr6 23588556 23588579 -165690975 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr6 23588580 23588615 -165690939 + AT_rich Low_complexity Low_complexity 1 35 0 309 238 19 76 chr6 23589549 23589654 -165689900 + MIR SINE MIR 44 142 -66 2133 118 10 0 chr6 23589670 23589975 -165689579 - AluSq SINE Alu -5 308 1 1757 175 45 0 chr6 23590072 23590358 -165689196 + AluJo SINE Alu 1 299 -13 2445 77 0 13 chr6 23591666 23591979 -165687575 + AluY SINE Alu 1 309 -2 1937 128 48 0 chr6 23592132 23592421 -165687133 - AluSx SINE Alu -9 303 1 2441 77 0 3 chr6 23592556 23592856 -165686698 + AluSg SINE Alu 1 299 -11 365 233 23 0 chr6 23594282 23594368 -165685186 + L2 LINE L2 3223 3310 -3 21 0 0 0 chr6 23594572 23594593 -165684961 + AT_rich Low_complexity Low_complexity 1 21 0 2067 111 4 4 chr6 23594660 23594973 -165684581 - AluSg SINE Alu 0 313 1 232 135 0 0 chr6 23594973 23595010 -165684544 + Alu SINE Alu 201 237 -66 213 339 34 34 chr6 23595260 23595378 -165684176 - L2 LINE L2 0 3272 3155 371 280 103 40 chr6 23595421 23595596 -165683958 - MIR SINE MIR -6 256 71 3915 159 66 22 chr6 23596223 23596725 -165682829 - L1MB1 LINE L1 -1 6167 5620 1258 224 53 30 chr6 23596725 23597029 -165682525 + AluJo SINE Alu 1 311 -1 3915 159 66 22 chr6 23597029 23597268 -165682286 - L1MB1 LINE L1 -548 5620 5393 1053 202 0 5 chr6 23597262 23597480 -165682074 + L1MB1 LINE L1 5150 5366 -780 * 2286 95 3 7 chr6 23597480 23597784 -165681770 + AluSg SINE Alu 1 303 -7 202 273 106 0 chr6 23598524 23598590 -165680964 - MIR3 SINE MIR -43 165 93 2307 109 3 0 chr6 23598749 23599060 -165680494 - AluSp SINE Alu -1 312 1 2272 99 3 0 chr6 23599745 23600038 -165679516 + AluSp SINE Alu 1 294 -19 1966 105 30 20 chr6 23600050 23600178 -165679376 + AluSq SINE Alu 1 126 -187 2414 78 0 7 chr6 23600178 23600485 -165679069 + AluSg1 SINE Alu 1 305 -4 1966 105 30 20 chr6 23600485 23600651 -165678903 + AluSq SINE Alu 126 298 -15 3941 159 56 27 chr6 23600717 23601228 -165678326 - MER4E LTR ERV1 -4 775 280 180 0 0 0 chr6 23601228 23601248 -165678306 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 567 53 0 0 chr6 23601247 23601322 -165678232 + (CA)n Simple_repeat Simple_repeat 1 75 0 3941 159 56 27 chr6 23601248 23601558 -165677996 - MER4E LTR ERV1 -499 280 6 846 239 0 0 chr6 23601698 23601857 -165677697 - FRAM SINE Alu -18 158 1 1741 218 44 36 chr6 23601963 23602458 -165677096 - MLT1D LTR MaLR 0 505 7 2418 79 10 0 chr6 23602760 23603065 -165676489 + AluSx SINE Alu 1 308 -4 551 253 41 57 chr6 23603163 23603357 -165676197 + MIR SINE MIR 72 262 0 1917 91 0 0 chr6 23603660 23603903 -165675651 - AluSx SINE Alu -69 243 1 2253 84 0 11 chr6 23604415 23604732 -165674822 - AluSq SINE Alu 0 314 1 1483 116 116 4 chr6 23604737 23604970 -165674584 - AluSx SINE Alu -18 294 36 1364 176 11 22 chr6 23605277 23605544 -165674010 - MER61B LTR ERV1 -29 396 133 2358 85 0 13 chr6 23605819 23606126 -165673428 - AluSq SINE Alu -9 304 2 246 240 160 0 chr6 23606710 23606785 -165672769 + MIR3 SINE MIR 115 201 -7 204 40 0 0 chr6 23607425 23607450 -165672104 + (T)n Simple_repeat Simple_repeat 1 25 0 2405 92 0 0 chr6 23607619 23607922 -165671632 - AluSq SINE Alu -10 303 1 2371 92 0 7 chr6 23608630 23608935 -165670619 + AluSc SINE Alu 1 303 -6 300 137 0 0 chr6 23608936 23608987 -165670567 + (CA)n Simple_repeat Simple_repeat 2 52 0 1112 155 0 34 chr6 23609086 23609293 -165670261 - AluJo SINE Alu -24 288 89 1884 92 99 34 chr6 23610418 23610711 -165668843 - AluSx SINE Alu 0 312 1 2191 84 0 11 chr6 23611194 23611479 -165668075 + AluSx SINE Alu 1 282 -30 554 118 13 0 chr6 23611479 23611555 -165667999 - AluS SINE Alu -231 78 2 258 120 0 0 chr6 23611568 23611611 -165667943 + (A)n Simple_repeat Simple_repeat 1 46 -4 2472 60 0 16 chr6 23611611 23611927 -165667627 + AluY SINE Alu 1 311 0 258 120 0 0 chr6 23611927 23611933 -165667621 + (A)n Simple_repeat Simple_repeat 45 50 0 847 180 20 20 chr6 23611992 23612142 -165667412 + FRAM SINE Alu 6 155 -21 2362 88 0 7 chr6 23613067 23613372 -165666182 - AluSp SINE Alu -10 303 1 2065 135 27 0 chr6 23613767 23614064 -165665490 - AluSx SINE Alu -3 309 5 258 259 0 37 chr6 23614196 23614277 -165665277 - MIR SINE MIR -73 135 58 1029 115 0 19 chr6 23614891 23615047 -165664507 - L1MB3 LINE L1 -1 6182 6030 2275 89 7 0 chr6 23615098 23615389 -165664165 + AluSg SINE Alu 1 293 -17 250 261 91 0 chr6 23615500 23615588 -165663966 - MIR SINE MIR -51 211 116 189 178 0 0 chr6 23615705 23615750 -165663804 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 23616142 23616175 -165663379 + AT_rich Low_complexity Low_complexity 1 33 0 626 222 43 48 chr6 23616757 23616964 -165662590 - MIR SINE MIR 0 262 57 2357 67 3 0 chr6 23617615 23617928 -165661626 - AluSp SINE Alu 0 314 1 2284 93 10 0 chr6 23618105 23618395 -165661159 + AluSx SINE Alu 1 293 -19 2285 80 10 0 chr6 23619519 23619808 -165659746 - AluSg1 SINE Alu -17 292 1 185 319 57 71 chr6 23620141 23620282 -165659272 + L2 LINE L2 3172 3310 -3 1225 143 46 97 chr6 23620832 23621091 -165658463 + AluJb SINE Alu 67 312 0 24 53 0 0 chr6 23621895 23621933 -165657621 + AT_rich Low_complexity Low_complexity 1 38 0 200 200 0 0 chr6 23621989 23622024 -165657530 - L2 LINE L2 -12 3301 3267 548 277 55 118 chr6 23622148 23622477 -165657077 - L2 LINE L2 -1 3271 2964 550 305 26 13 chr6 23622715 23622941 -165656613 - L2 LINE L2 -599 2715 2487 21 0 0 0 chr6 23623024 23623045 -165656509 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 23623622 23623650 -165655904 + AT_rich Low_complexity Low_complexity 1 28 0 192 273 0 0 chr6 23625784 23625839 -165653715 + L3b LINE CR1 1383 1437 -146 2190 94 0 52 chr6 23626024 23626352 -165653202 - AluSq SINE Alu -2 311 1 2147 117 0 0 chr6 23626363 23626663 -165652891 - AluY SINE Alu -11 300 1 2051 89 32 3 chr6 23626799 23627081 -165652473 - AluSg SINE Alu -19 291 2 198 328 0 33 chr6 23627183 23627244 -165652310 - L2 LINE L2 -30 3242 3184 1882 142 3 32 chr6 23627438 23627749 -165651805 - AluJo SINE Alu -8 304 3 1186 145 0 0 chr6 23628086 23628258 -165651296 + AluJb SINE Alu 130 301 -11 255 263 13 125 chr6 23628554 23628706 -165650848 + L2 LINE L2 2916 3050 -222 907 240 59 125 chr6 23628741 23628977 -165650577 - LTR67 LTR ERVL 0 557 307 2211 121 0 13 chr6 23628977 23629154 -165650400 - AluSx SINE Alu -2 310 137 2626 45 3 3 chr6 23629154 23629464 -165650090 - AluY SINE Alu -1 310 1 2211 121 0 13 chr6 23629464 23629600 -165649954 - AluSx SINE Alu -175 137 1 907 240 59 125 chr6 23629600 23629955 -165649599 - LTR67 LTR ERVL -250 307 5 261 182 55 0 chr6 23630000 23630055 -165649499 + MIR SINE MIR 156 213 -49 27 0 0 0 chr6 23631964 23631991 -165647563 + AT_rich Low_complexity Low_complexity 1 27 0 306 237 148 15 chr6 23633772 23633907 -165645647 - L1ME4a LINE L1 -1 6189 6037 711 258 140 56 chr6 23634242 23634434 -165645120 - L1ME4a LINE L1 -223 6016 5842 930 265 185 35 chr6 23634434 23634861 -165644693 + LTR16C LTR ERVL 1 491 0 711 258 140 56 chr6 23634861 23635240 -165644314 - L1ME4a LINE L1 -397 5842 5352 804 177 23 0 chr6 23635240 23635370 -165644184 - FLAM_A SINE Alu 0 133 1 711 258 140 56 chr6 23635370 23635500 -165644054 - L1ME4a LINE L1 -887 5352 5234 2393 85 0 0 chr6 23635520 23635814 -165643740 - AluSx SINE Alu -17 295 2 405 202 0 11 chr6 23635871 23635965 -165643589 - L1ME4a LINE L1 -4107 2289 2197 282 178 0 0 chr6 23635967 23636021 -165643533 - Alu SINE Alu -269 39 1 302 45 0 136 chr6 23637281 23637298 -165642256 + L1MB3 LINE L1 6127 6145 -38 1972 123 16 52 chr6 23637298 23637608 -165641946 - AluSg SINE Alu -11 299 1 302 45 0 136 chr6 23637608 23637656 -165641898 + L1MB3 LINE L1 6145 6183 0 363 366 65 5 chr6 23637940 23638156 -165641398 - MIR SINE MIR -14 248 20 287 321 0 27 chr6 23638293 23638405 -165641149 - L2 LINE L2 -1 3312 3204 2441 87 0 0 chr6 23638609 23638919 -165640635 + AluSg SINE Alu 1 310 0 861 202 40 15 chr6 23638924 23639122 -165640432 + MER82 DNA MER2_type 5 207 -446 21 82 0 0 chr6 23639124 23639173 -165640381 + AT_rich Low_complexity Low_complexity 1 49 0 2197 215 35 20 chr6 23639178 23639633 -165639921 + MER82 DNA MER2_type 191 652 -1 485 302 26 16 chr6 23639733 23639922 -165639632 - L2 LINE L2 -248 3065 2875 2026 81 23 8 chr6 23640400 23640660 -165638894 - AluSx SINE Alu -48 264 1 2406 63 0 47 chr6 23640673 23640991 -165638563 - AluY SINE Alu -7 304 2 2445 62 10 19 chr6 23640998 23641306 -165638248 - AluY SINE Alu -6 305 1 2192 85 61 0 chr6 23641964 23642257 -165637297 - AluSp SINE Alu -2 311 1 1832 157 3 14 chr6 23642451 23642745 -165636809 - AluJo SINE Alu -19 293 3 37 23 0 0 chr6 23643681 23643725 -165635829 + AT_rich Low_complexity Low_complexity 1 44 0 4583 137 50 61 chr6 23643773 23645243 -165634311 + pTR5 LTR ERV1 741 2438 0 2061 77 0 0 chr6 23645300 23645560 -165633994 + AluY SINE Alu 1 260 -51 333 0 0 0 chr6 23645605 23645642 -165633912 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1929 146 17 3 chr6 23646041 23646205 -165633349 - AluSx SINE Alu -7 305 134 2024 124 10 13 chr6 23646205 23646503 -165633051 - AluSx SINE Alu -15 297 1 1929 146 17 3 chr6 23646503 23646639 -165632915 - AluSx SINE Alu -178 134 1 23 54 0 0 chr6 23646644 23646681 -165632873 + AT_rich Low_complexity Low_complexity 1 37 0 2142 116 3 0 chr6 23646893 23647187 -165632367 - AluSx SINE Alu -11 301 7 1066 177 0 58 chr6 23647451 23647677 -165631877 + AluJb SINE Alu 85 297 -15 25 0 0 0 chr6 23648673 23648698 -165630856 + AT_rich Low_complexity Low_complexity 1 25 0 1106 196 0 24 chr6 23648699 23648908 -165630646 - AluJo SINE Alu -23 289 86 2281 107 0 3 chr6 23649072 23649382 -165630172 - AluSc SINE Alu 0 309 1 2263 109 0 3 chr6 23649876 23650178 -165629376 + AluSx SINE Alu 1 301 -11 193 222 0 0 chr6 23651379 23651424 -165628130 - L2 LINE L2 -5 3308 3264 2502 57 0 10 chr6 23653303 23653602 -165625952 + AluY SINE Alu 1 296 -15 306 0 0 0 chr6 23653603 23653637 -165625917 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr6 23653636 23653665 -165625889 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 476 356 50 19 chr6 23654042 23654362 -165625192 + L3 LINE CR1 1147 1476 -101 23 33 0 0 chr6 23655073 23655103 -165624451 + AT_rich Low_complexity Low_complexity 1 30 0 215 225 81 72 chr6 23656218 23656329 -165623225 + L2 LINE L2 3160 3271 -1 1896 127 11 14 chr6 23656647 23656831 -165622723 - AluSc SINE Alu 0 318 134 2452 58 0 26 chr6 23656831 23657139 -165622415 - AluY SINE Alu -11 300 1 1896 127 11 14 chr6 23657139 23657273 -165622281 - AluSc SINE Alu -184 134 1 285 275 14 0 chr6 23657298 23657367 -165622187 + CT-rich Low_complexity Low_complexity 3 72 0 602 244 0 0 chr6 23657448 23657567 -165621987 + FLAM_A SINE Alu 8 126 -16 777 132 0 90 chr6 23658079 23658109 -165621445 - FLAM_C SINE Alu -169 133 102 1599 133 182 0 chr6 23658109 23658373 -165621181 + AluSx SINE Alu 1 312 0 777 132 0 90 chr6 23658373 23658486 -165621068 - FLAM_C SINE Alu -200 102 3 35 0 0 0 chr6 23659056 23659091 -165620463 + AT_rich Low_complexity Low_complexity 1 35 0 2110 84 40 0 chr6 23659096 23659370 -165620184 - AluSg SINE Alu -25 285 1 1184 68 0 20 chr6 23659370 23659516 -165620038 - AluSq/x SINE Alu -170 143 1 524 315 72 21 chr6 23659639 23659918 -165619636 - L2 LINE L2 -2 3311 3019 2228 128 0 0 chr6 23660207 23660520 -165619034 - AluSq SINE Alu 0 313 1 1041 131 0 0 chr6 23661354 23661530 -165618024 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 245 336 60 8 chr6 23661536 23661670 -165617884 + MIR3 SINE MIR 61 201 -7 505 203 38 23 chr6 23661974 23662107 -165617447 - MIR SINE MIR -71 191 57 2504 57 7 0 chr6 23662163 23662464 -165617090 + AluSp SINE Alu 1 303 -10 198 118 0 0 chr6 23662497 23662531 -165617023 + (TCCCC)n Simple_repeat Simple_repeat 4 37 0 1926 152 0 3 chr6 23662531 23662821 -165616733 - AluJb SINE Alu -23 289 1 219 293 28 28 chr6 23662822 23662928 -165616626 - L2 LINE L2 -303 2969 2864 669 119 0 0 chr6 23664736 23664837 -165614717 + AluJb SINE Alu 210 310 -2 2373 79 0 3 chr6 23665006 23665298 -165614256 - AluSg SINE Alu -19 291 1 286 344 68 21 chr6 23665450 23665642 -165613912 + MIR SINE MIR 6 206 -56 2288 78 3 3 chr6 23665654 23665971 -165613583 + AluSp SINE Alu 1 317 0 2102 115 0 44 chr6 23666865 23667186 -165612368 - AluSx SINE Alu -5 307 1 1682 150 18 81 chr6 23667251 23667389 -165612165 + AluJo SINE Alu 1 146 -166 261 0 0 0 chr6 23667389 23667418 -165612136 + (TA)n Simple_repeat Simple_repeat 2 30 0 1682 150 18 81 chr6 23667418 23667612 -165611942 + AluJo SINE Alu 146 312 0 770 214 92 6 chr6 23667815 23667988 -165611566 + MER5A DNA MER1_type 2 189 0 550 221 16 89 chr6 23668334 23668524 -165611030 - MER5B DNA MER1_type -2 176 1 2318 100 0 0 chr6 23669274 23669573 -165609981 + AluSg1 SINE Alu 1 299 -10 2206 73 35 7 chr6 23670209 23670495 -165609059 - AluSg SINE Alu -16 294 1 2125 119 3 13 chr6 23671192 23671494 -165608060 - AluSg SINE Alu -10 300 2 2296 94 0 7 chr6 23671919 23672218 -165607336 + AluSq SINE Alu 1 297 -16 216 200 0 0 chr6 23672362 23672407 -165607147 + T-rich Low_complexity Low_complexity 1 45 0 213 39 0 0 chr6 23672606 23672632 -165606922 + (TG)n Simple_repeat Simple_repeat 2 27 0 652 177 14 14 chr6 23672755 23672896 -165606658 - L1MB3 LINE L1 -2 6181 6041 1801 35 39 9 chr6 23672896 23673127 -165606427 + L1PA7 LINE L1 5915 6152 -2 2663 113 13 0 chr6 23673132 23673513 -165606041 - L1MB3 LINE L1 -130 6053 5668 2142 128 0 3 chr6 23673546 23673836 -165605718 - AluSq SINE Alu -24 289 1 2252 118 3 0 chr6 23674112 23674417 -165605137 + AluSq SINE Alu 1 306 -7 518 264 91 32 chr6 23674760 23674980 -165604574 - MIR SINE MIR -5 257 25 1720 151 49 30 chr6 23674984 23675288 -165604266 - AluJo SINE Alu -2 310 1 525 71 0 0 chr6 23675374 23675444 -165604110 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 2233 124 0 10 chr6 23675444 23675758 -165603796 - AluSx SINE Alu -1 311 1 21 36 0 0 chr6 23676157 23676185 -165603369 + AT_rich Low_complexity Low_complexity 1 28 0 1793 164 0 37 chr6 23676457 23676780 -165602774 - AluJo SINE Alu -1 311 1 524 240 65 37 chr6 23676970 23677187 -165602367 - L1MC4a LINE L1 -1764 6044 5822 363 154 0 0 chr6 23677198 23677263 -165602291 + (TA)n Simple_repeat Simple_repeat 2 66 0 280 207 98 0 chr6 23677265 23677347 -165602207 - L1MC4 LINE L1 -1339 6703 6614 1330 99 28 0 chr6 23677350 23677531 -165602023 - AluSg/x SINE Alu -7 305 120 442 201 33 113 chr6 23677531 23677548 -165602006 - L1MD2 LINE L1 -20 7960 7943 2048 130 0 17 chr6 23677548 23677849 -165601705 + AluSq SINE Alu 1 296 -17 442 201 33 113 chr6 23677849 23677959 -165601595 - L1MD2 LINE L1 -37 7943 7826 2307 104 3 3 chr6 23677959 23678268 -165601286 + AluSx SINE Alu 1 309 -3 442 201 33 113 chr6 23678268 23678370 -165601184 - L1MD2 LINE L1 -154 7826 6208 2354 147 14 14 chr6 23678407 23678835 -165600719 - L1MB4 LINE L1 -277 5903 5476 6533 66 18 47 chr6 23678934 23679916 -165599638 - SVA Other Other 0 1386 433 1592 82 7 36 chr6 23679933 23680212 -165599342 - SVA Other Other -520 866 596 5869 63 25 61 chr6 23680240 23681215 -165598339 - SVA Other Other -518 868 5 364 269 19 28 chr6 23681215 23681323 -165598231 - L1MD2 LINE L1 -217 6142 6036 1717 153 27 34 chr6 23681323 23681618 -165597936 - AluJo SINE Alu -16 296 4 2200 99 0 63 chr6 23682151 23682484 -165597070 + AluSx SINE Alu 1 312 0 213 280 65 11 chr6 23682534 23682627 -165596927 - MIR SINE MIR -79 183 86 1707 168 31 11 chr6 23682717 23683003 -165596551 + AluJb SINE Alu 1 292 -20 407 335 58 5 chr6 23683144 23683368 -165596186 + MIR SINE MIR 13 248 -14 191 205 0 0 chr6 23684414 23684453 -165595101 + MER5B DNA MER1_type 2 40 -138 191 304 0 0 chr6 23684478 23684524 -165595030 - MER5B DNA MER1_type -132 46 1 2418 70 3 10 chr6 23686039 23686339 -165593215 - AluY SINE Alu -11 300 3 324 0 0 0 chr6 23686380 23686416 -165593138 + (TG)n Simple_repeat Simple_repeat 1 36 0 893 215 0 0 chr6 23686416 23686574 -165592980 - FAM SINE Alu -17 158 1 2238 95 20 17 chr6 23686599 23686895 -165592659 - AluSx SINE Alu -15 297 1 185 0 40 0 chr6 23687236 23687261 -165592293 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2065 129 0 10 chr6 23687263 23687557 -165591997 - AluSq SINE Alu -22 291 1 500 176 0 0 chr6 23688315 23688400 -165591154 + AluY SINE Alu 209 293 -18 2370 97 3 0 chr6 23688411 23688721 -165590833 + AluSx SINE Alu 1 311 -1 1853 185 0 10 chr6 23688731 23689045 -165590509 + AluJb SINE Alu 1 311 -1 1099 91 0 0 chr6 23689080 23689212 -165590342 + AluSq/x SINE Alu 1 132 -181 201 39 0 0 chr6 23689366 23689392 -165590162 + (TA)n Simple_repeat Simple_repeat 1 26 0 2330 73 3 3 chr6 23689393 23689682 -165589872 - AluSp SINE Alu -24 289 1 2153 114 0 27 chr6 23689695 23689993 -165589561 - AluSq SINE Alu -23 290 1 26 0 0 0 chr6 23690064 23690090 -165589464 + AT_rich Low_complexity Low_complexity 1 26 0 1996 108 11 28 chr6 23690560 23690846 -165588708 + AluSq SINE Alu 13 293 -20 194 159 45 0 chr6 23692919 23692963 -165586591 + CT-rich Low_complexity Low_complexity 3 48 0 22 0 0 0 chr6 23693431 23693453 -165586101 + AT_rich Low_complexity Low_complexity 1 22 0 226 248 69 97 chr6 23693528 23693585 -165585969 + L1ME4a LINE L1 5975 6032 -89 2242 108 0 7 chr6 23693585 23693882 -165585672 - AluSx SINE Alu -12 300 6 226 248 69 97 chr6 23693882 23693969 -165585585 + L1ME4a LINE L1 6032 6115 -6 1606 165 10 34 chr6 23694255 23694387 -165585167 + AluJb SINE Alu 2 136 -199 2247 110 3 13 chr6 23694387 23694697 -165584857 + AluSp SINE Alu 1 307 -6 1606 165 10 34 chr6 23694697 23694905 -165584649 + AluJb SINE Alu 136 335 0 705 164 16 0 chr6 23695571 23695693 -165583861 - AluJb SINE Alu -8 304 181 2334 91 7 0 chr6 23695693 23695989 -165583565 - AluSg SINE Alu -12 298 1 216 0 0 0 chr6 23695989 23696013 -165583541 + (T)n Simple_repeat Simple_repeat 1 24 0 279 0 0 0 chr6 23696657 23696688 -165582866 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 200 33 0 chr6 23696868 23696928 -165582626 + MIR SINE MIR 86 147 -115 238 235 86 12 chr6 23697080 23697161 -165582393 + MIR3 SINE MIR 91 177 -31 1718 81 154 11 chr6 23697201 23697461 -165582093 - AluSg SINE Alu -3 297 1 570 41 0 0 chr6 23697712 23697785 -165581769 + AluY SINE Alu 223 295 -15 360 0 0 0 chr6 23698088 23698128 -165581426 + (TG)n Simple_repeat Simple_repeat 1 40 0 1883 116 45 0 chr6 23698128 23698396 -165581158 - AluSq SINE Alu -33 280 1 2211 127 0 0 chr6 23698686 23698986 -165580568 - AluSx SINE Alu -12 300 1 211 214 24 0 chr6 23699972 23700014 -165579540 + GA-rich Low_complexity Low_complexity 2 44 0 2345 92 3 3 chr6 23700138 23700444 -165579110 - AluSq SINE Alu -7 306 1 2213 117 3 0 chr6 23700446 23700745 -165578809 - AluSg SINE Alu -10 300 1 192 77 0 0 chr6 23701591 23701617 -165577937 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 599 205 70 119 chr6 23701827 23701898 -165577656 - L1ME2 LINE L1 -1 6163 6090 2305 94 7 3 chr6 23701898 23702205 -165577349 - AluSq SINE Alu -5 308 1 599 205 70 119 chr6 23702205 23702345 -165577209 - L1ME2 LINE L1 -74 6090 5969 201 39 0 0 chr6 23702345 23702371 -165577183 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 599 205 70 119 chr6 23702371 23702460 -165577094 - L1ME2 LINE L1 -195 5969 5877 1564 216 129 16 chr6 23702628 23702808 -165576746 - L1MD2 LINE L1 -8 6351 6193 204 40 0 0 chr6 23702808 23702833 -165576721 + (TG)n Simple_repeat Simple_repeat 2 26 0 1564 216 129 16 chr6 23702833 23703068 -165576486 - L1MD2 LINE L1 -166 6193 5885 1920 151 0 22 chr6 23703068 23703380 -165576174 - AluSx SINE Alu -7 305 1 934 149 65 0 chr6 23703380 23703548 -165576006 - L1MD2 LINE L1 -877 5482 5304 2634 67 0 13 chr6 23703565 23703880 -165575674 + AluSp SINE Alu 1 311 -2 2150 143 0 0 chr6 23704177 23704485 -165575069 - AluSq SINE Alu -5 308 1 378 243 90 30 chr6 23704844 23705032 -165574522 + MIR SINE MIR 17 212 -50 2138 122 0 35 chr6 23705214 23705533 -165574021 - AluSg SINE Alu -1 309 2 192 222 62 49 chr6 23705823 23705904 -165573650 + MIR SINE MIR 34 115 -93 2077 128 0 10 chr6 23706454 23706760 -165572794 + AluY SINE Alu 1 303 -8 459 243 108 60 chr6 23707898 23708166 -165571388 + L2 LINE L2 3033 3313 0 191 238 0 0 chr6 23708623 23708665 -165570889 + MIR SINE MIR 30 71 -137 2388 101 0 0 chr6 23708785 23709083 -165570471 - AluSx SINE Alu -14 298 1 432 0 0 0 chr6 23709168 23709216 -165570338 + (TG)n Simple_repeat Simple_repeat 2 49 0 671 242 6 22 chr6 23709717 23709899 -165569655 + MER5A DNA MER1_type 7 185 -4 1780 149 54 0 chr6 23709970 23710266 -165569288 - AluSx SINE Alu 0 312 1 180 289 0 0 chr6 23711655 23711707 -165567847 + MIR SINE MIR 156 207 -55 362 205 131 16 chr6 23713109 23713231 -165566323 + MIR SINE MIR 69 204 -58 2262 123 3 0 chr6 23713525 23713834 -165565720 + AluSq SINE Alu 1 310 -3 311 148 0 45 chr6 23713883 23713971 -165565583 + (TCTCC)n Simple_repeat Simple_repeat 3 86 0 1794 178 0 7 chr6 23713974 23714266 -165565288 - AluJb SINE Alu -18 294 5 21 36 0 0 chr6 23715853 23715881 -165563673 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 29 0 chr6 23716128 23716409 -165563145 + AluSx SINE Alu 1 289 -23 2151 256 79 24 chr6 23716489 23717199 -165562355 + MER20B DNA MER1_type 35 783 0 234 357 10 10 chr6 23717249 23717347 -165562207 + MER5A DNA MER1_type 4 101 -88 2424 90 3 3 chr6 23717409 23717721 -165561833 - AluSx SINE Alu 0 312 1 2140 138 0 13 chr6 23717848 23718160 -165561394 + AluSx SINE Alu 1 308 -4 228 325 145 35 chr6 23718226 23718632 -165560922 - L2 LINE L2 -691 2623 2173 2122 111 7 10 chr6 23718853 23719150 -165560404 - AluSx SINE Alu -16 296 1 1888 144 10 13 chr6 23720939 23721252 -165558302 - AluJb SINE Alu 0 312 1 238 215 25 0 chr6 23721415 23721494 -165558060 + (TA)n Simple_repeat Simple_repeat 2 82 0 282 326 142 0 chr6 23721573 23721714 -165557840 - MER91A DNA MER1_type -35 161 1 1782 149 14 35 chr6 23721831 23722149 -165557405 - AluJo SINE Alu 0 312 1 2329 112 3 0 chr6 23722509 23722821 -165556733 + AluSq SINE Alu 1 313 0 226 196 246 36 chr6 23723016 23723154 -165556400 - L1MA10 LINE L1 0 6334 6168 584 135 0 0 chr6 23723168 23723257 -165556297 - AluSg/x SINE Alu -4 305 217 1747 187 35 16 chr6 23723277 23723652 -165555902 - L1MB1 LINE L1 -15 6174 5793 2035 118 42 0 chr6 23724448 23724735 -165554819 + AluSx SINE Alu 1 299 -13 2278 135 0 0 chr6 23724962 23725274 -165554280 - AluSx SINE Alu 0 312 1 1345 132 0 85 chr6 23725466 23725577 -165553977 + MER46A DNA MER2_type 1 80 -2651 1844 124 40 11 chr6 23725577 23725879 -165553675 - AluSq SINE Alu 0 310 1 1345 132 0 85 chr6 23725879 23726024 -165553530 + MER46A DNA MER2_type 80 236 0 21 0 0 0 chr6 23728305 23728326 -165551228 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr6 23728825 23728862 -165550692 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 189 0 0 0 chr6 23729365 23729386 -165550168 + (TG)n Simple_repeat Simple_repeat 1 21 0 219 259 0 0 chr6 23731756 23731810 -165547744 + MER5B DNA MER1_type 1 54 -124 2101 147 0 3 chr6 23731818 23732130 -165547424 + AluJb SINE Alu 1 311 -1 1366 175 4 22 chr6 23732133 23732362 -165547192 + AluJo SINE Alu 6 230 -82 221 157 0 59 chr6 23732894 23732945 -165546609 + GA-rich Low_complexity Low_complexity 4 51 0 1962 134 81 85 chr6 23733057 23733462 -165546092 + Tigger2a DNA MER2_type 3 407 -2301 2289 114 0 0 chr6 23733462 23733761 -165545793 - AluSq SINE Alu -14 299 1 1962 134 81 85 chr6 23733761 23733789 -165545765 + Tigger2a DNA MER2_type 407 434 0 207 0 0 0 chr6 23734473 23734496 -165545058 + (T)n Simple_repeat Simple_repeat 1 23 0 2945 97 22 48 chr6 23734496 23735670 -165543884 - SVA Other Other -799 1047 432 426 20 0 0 chr6 23736405 23736456 -165543098 + (TGG)n Simple_repeat Simple_repeat 3 53 0 2003 176 34 10 chr6 23737017 23737431 -165542123 + L1MB3 LINE L1 5718 6141 -42 871 117 95 0 chr6 23737432 23737569 -165541985 + AluSg/x SINE Alu 146 295 -15 306 0 0 0 chr6 23737592 23737626 -165541928 + (TA)n Simple_repeat Simple_repeat 1 34 0 2495 61 3 0 chr6 23737658 23737952 -165541602 - AluSg SINE Alu -14 296 2 1925 152 3 3 chr6 23738405 23738695 -165540859 + AluJo SINE Alu 7 296 -16 255 196 0 0 chr6 23738745 23738801 -165540753 - MER5A DNA MER1_type -83 106 51 457 254 90 16 chr6 23738835 23739024 -165540530 - HAL1 LINE L1 -2256 251 49 199 227 0 0 chr6 23739192 23739236 -165540318 - MIR SINE MIR -6 256 213 2060 181 98 65 chr6 23739649 23740253 -165539301 + MLT1E2 LTR MaLR 1 626 0 224 295 213 8 chr6 23740435 23740557 -165538997 + MIR3 SINE MIR 20 166 -42 610 115 21 21 chr6 23740803 23740899 -165538655 + AluSq/x SINE Alu 39 134 -178 2232 94 0 33 chr6 23740902 23741209 -165538345 + AluSq SINE Alu 6 302 -11 896 199 6 0 chr6 23741945 23742111 -165537443 + FRAM SINE Alu 4 170 -6 234 0 0 0 chr6 23743052 23743078 -165536476 + (TG)n Simple_repeat Simple_repeat 1 26 0 1779 132 16 0 chr6 23743078 23743329 -165536225 - AluSx SINE Alu -33 279 25 2243 112 0 0 chr6 23743759 23744053 -165535501 + AluSx SINE Alu 1 294 -18 961 222 15 15 chr6 23744438 23744641 -165534913 - MLT1A2 LTR MaLR 0 374 172 842 208 5 68 chr6 23744662 23744709 -165534845 - MLT1A2 LTR MaLR -171 194 146 2374 100 0 3 chr6 23744709 23745018 -165534536 - AluSp SINE Alu -5 308 1 842 208 5 68 chr6 23745018 23745177 -165534377 - MLT1A2 LTR MaLR -219 146 1 2263 102 0 3 chr6 23745305 23745627 -165533927 - AluSq SINE Alu 0 321 1 2282 102 0 23 chr6 23745830 23746135 -165533419 + AluSg SINE Alu 1 298 -12 395 331 19 6 chr6 23746225 23746385 -165533169 + MIR SINE MIR 35 196 -66 1793 157 7 4 chr6 23746410 23746714 -165532840 + AluJb SINE Alu 1 305 0 2076 116 3 46 chr6 23746828 23747155 -165532399 + AluSq SINE Alu 1 313 0 402 273 15 0 chr6 23747156 23747283 -165532271 + MIR SINE MIR 23 152 -62 2400 103 0 0 chr6 23748066 23748376 -165531178 - AluSg SINE Alu 0 310 1 2198 98 7 0 chr6 23748707 23749021 -165530533 + AluSx SINE Alu 1 316 0 2381 94 3 0 chr6 23749826 23750124 -165529430 + AluSp SINE Alu 1 299 -14 2088 105 61 0 chr6 23750222 23750517 -165529037 + AluSq SINE Alu 1 313 0 1862 150 7 3 chr6 23750527 23750834 -165528720 + AluSx SINE Alu 1 308 -4 1301 167 13 0 chr6 23750835 23751069 -165528485 + L1MD3 LINE L1 7746 7982 -13 749 124 0 0 chr6 23751093 23751198 -165528356 + FLAM_C SINE Alu 2 106 -37 2269 95 7 13 chr6 23752512 23752817 -165526737 - AluSx SINE Alu -9 303 1 340 221 87 55 chr6 23753779 23753906 -165525648 - MIR SINE MIR -60 148 18 1028 143 0 12 chr6 23754312 23754473 -165525081 - AluSg/x SINE Alu -13 299 141 2196 95 25 0 chr6 23755121 23755404 -165524150 - AluSx SINE Alu -22 290 1 312 336 23 0 chr6 23756830 23756958 -165522596 + MIR3 SINE MIR 78 208 0 22 0 0 0 chr6 23757173 23757195 -165522359 + AT_rich Low_complexity Low_complexity 1 22 0 14711 199 43 17 chr6 23757390 23761728 -165517826 + L1PB1 LINE L1 6 4234 -2633 2200 115 0 3 chr6 23761728 23762024 -165517530 + AluSg SINE Alu 1 295 -15 14711 199 43 17 chr6 23762024 23762356 -165517198 + L1PB1 LINE L1 4234 4556 -2311 2074 112 42 0 chr6 23762356 23762643 -165516911 + AluSc SINE Alu 1 299 -10 14711 199 43 17 chr6 23762643 23763065 -165516489 + L1PB1 LINE L1 4556 4966 -1901 2074 127 19 3 chr6 23763065 23763372 -165516182 + AluSx SINE Alu 1 312 0 14711 199 43 17 chr6 23763372 23764804 -165514750 + L1PB1 LINE L1 4966 6865 -2 2014 145 17 7 chr6 23764948 23765115 -165514439 - AluSx SINE Alu -12 300 127 2023 128 6 31 chr6 23765115 23765436 -165514118 - AluSp SINE Alu 0 313 1 2014 145 17 7 chr6 23765436 23765565 -165513989 - AluSx SINE Alu -185 127 1 2127 131 3 6 chr6 23766628 23766941 -165512613 - AluSx SINE Alu 0 312 1 356 278 247 11 chr6 23770590 23770853 -165508701 - L2 LINE L2 -819 2495 2171 2205 109 10 10 chr6 23771830 23772134 -165507420 - AluSp SINE Alu -9 304 1 1768 80 0 13 chr6 23772908 23773133 -165506421 - AluY SINE Alu -7 304 83 2128 113 35 0 chr6 23773460 23773743 -165505811 + AluSx SINE Alu 2 294 -18 2308 67 14 3 chr6 23773749 23774031 -165505523 + AluSp SINE Alu 20 304 -9 2036 116 0 11 chr6 23774381 23774702 -165504852 + AluSx SINE Alu 1 318 0 226 122 0 24 chr6 23774845 23774886 -165504668 - LTR16A1 LTR ERVL -361 96 57 388 280 96 75 chr6 23774931 23775336 -165504218 + L2 LINE L2 2781 3221 -92 1832 148 0 0 chr6 23775450 23775720 -165503834 - AluSx SINE Alu -10 302 33 1993 146 17 50 chr6 23775886 23776248 -165503306 + MER4D LTR ERV1 554 903 0 644 234 114 0 chr6 23776250 23776417 -165503137 - L1MB3 LINE L1 -154 6029 5844 5116 132 63 9 chr6 23776554 23777393 -165502161 + MER4D LTR ERV1 1 884 -19 2423 87 0 0 chr6 23777398 23777698 -165501856 - AluSq SINE Alu -13 300 1 918 191 13 74 chr6 23778350 23778581 -165500973 - AluJo SINE Alu -9 303 87 2468 54 3 3 chr6 23779609 23779907 -165499647 + AluSp SINE Alu 1 298 -15 180 0 0 0 chr6 23780746 23780766 -165498788 + (TG)n Simple_repeat Simple_repeat 1 20 0 1518 149 23 50 chr6 23780836 23781137 -165498417 + AluJb SINE Alu 1 293 -19 342 0 0 0 chr6 23781659 23781697 -165497857 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1641 160 80 0 chr6 23781699 23781987 -165497567 - AluSx SINE Alu -1 311 1 278 339 80 9 chr6 23782181 23782293 -165497261 + L2 LINE L2 3148 3267 -5 21 36 0 0 chr6 23782544 23782572 -165496982 + AT_rich Low_complexity Low_complexity 1 28 0 256 180 20 0 chr6 23783929 23783979 -165495575 + LTR16C LTR ERVL 71 121 -370 424 179 152 0 chr6 23786577 23786689 -165492865 - L1MB4 LINE L1 -2 6178 6050 1416 126 50 14 chr6 23787754 23787976 -165491578 - MER30 DNA MER1_type 0 230 1 1263 125 0 6 chr6 23788063 23788239 -165491315 + AluJo SINE Alu 1 175 -137 1586 223 142 15 chr6 23788473 23788982 -165490572 - MLT1F1 LTR MaLR 0 567 1 2667 42 0 0 chr6 23789136 23789444 -165490110 - AluY SINE Alu -3 308 1 837 241 111 31 chr6 23789462 23789752 -165489802 - MSTD LTR MaLR -51 345 21 652 239 171 14 chr6 23789770 23789992 -165489562 - MIR SINE MIR -1 261 5 434 338 61 3 chr6 23790047 23790340 -165489214 - L1ME3A LINE L1 -208 5962 5653 2471 138 59 7 chr6 23790449 23790854 -165488700 + MSTA LTR MaLR 1 426 -2 1591 157 20 24 chr6 23790865 23791159 -165488395 - MLT1B LTR MaLR 0 390 98 920 138 0 8 chr6 23791166 23791296 -165488258 - FLAM_C SINE Alu -14 129 1 748 135 0 0 chr6 23791296 23791400 -165488154 - MLT1B LTR MaLR -281 109 6 543 130 0 22 chr6 23791447 23791539 -165488015 + MER65A LTR ERV1 1 90 -355 348 188 0 0 chr6 23791543 23791607 -165487947 + FLAM SINE Alu 69 132 -1 2001 77 0 40 chr6 23794530 23794804 -165484750 + AluY SINE Alu 35 297 -14 359 253 0 21 chr6 23795529 23795624 -165483930 + L3 LINE CR1 1481 1573 -4 309 89 0 0 chr6 23795929 23795974 -165483580 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 316 97 26 chr6 23796429 23796543 -165483011 - L2 LINE L2 -6 3266 3145 260 27 27 0 chr6 23796740 23796777 -165482777 + (GA)n Simple_repeat Simple_repeat 1 38 0 332 279 27 108 chr6 23796856 23797078 -165482476 + MIR SINE MIR 6 209 -53 2114 90 0 21 chr6 23797081 23797396 -165482158 + AluY SINE Alu 1 309 0 2085 116 0 3 chr6 23797399 23797726 -165481828 + AluSx SINE Alu 1 326 0 394 216 11 11 chr6 23798192 23798280 -165481274 + L2 LINE L2 3224 3311 -2 206 361 83 10 chr6 23798286 23798491 -165481063 - L2 LINE L2 -25 3247 3028 554 211 23 76 chr6 23798527 23798618 -165480936 + MER97a DNA MER1_type? 13 92 -802 1778 123 80 4 chr6 23798618 23798894 -165480660 + AluSg SINE Alu 7 303 -7 554 211 23 76 chr6 23798894 23798973 -165480581 + MER97a DNA MER1_type? 92 174 -720 2061 84 40 0 chr6 23798975 23799283 -165480271 + AluSq SINE Alu 1 319 0 924 138 0 8 chr6 23799359 23799489 -165480065 + AluSg SINE Alu 6 134 -176 2090 114 3 26 chr6 23799489 23799796 -165479758 + AluSx SINE Alu 1 300 -12 2373 93 7 0 chr6 23799796 23800097 -165479457 + AluSp SINE Alu 1 303 -10 1899 140 0 0 chr6 23801605 23801877 -165477677 + AluSp SINE Alu 1 272 -41 546 310 29 8 chr6 23802119 23802361 -165477193 - L2 LINE L2 -1242 2072 1826 412 254 79 9 chr6 23802447 23802561 -165476993 + MIR SINE MIR 78 199 -63 2561 165 22 40 chr6 23802681 23803184 -165476370 - L1MB2 LINE L1 -2 6169 5676 2408 89 3 6 chr6 23803745 23804058 -165475496 + AluSx SINE Alu 1 312 0 2449 70 3 0 chr6 23804181 23804480 -165475074 - AluSc SINE Alu -9 300 1 1766 173 7 7 chr6 23804486 23804786 -165474768 - AluJo SINE Alu -12 300 1 1943 109 88 0 chr6 23805987 23806272 -165473282 - AluSp SINE Alu -2 311 2 207 0 0 0 chr6 23808312 23808335 -165471219 + (TA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr6 23808386 23808414 -165471140 + (CA)n Simple_repeat Simple_repeat 2 29 0 2077 110 0 28 chr6 23812062 23812380 -165467174 - AluSq SINE Alu 0 311 2 2240 112 0 3 chr6 23812598 23812901 -165466653 + AluSc SINE Alu 1 302 -7 1646 155 34 34 chr6 23812912 23813208 -165466346 + AluJb SINE Alu 1 296 -16 689 252 53 0 chr6 23814010 23814161 -165465393 + MIR SINE MIR 3 161 -101 353 338 96 0 chr6 23815688 23815824 -165463730 - MIR SINE MIR -112 150 2 2203 119 13 7 chr6 23815911 23816221 -165463333 + AluSx SINE Alu 1 312 0 3113 132 17 25 chr6 23817033 23817511 -165462043 + MER101 LTR ERV1 1 474 0 449 280 104 26 chr6 23817591 23817786 -165461768 - MIR SINE MIR -7 255 46 367 294 37 0 chr6 23818510 23818619 -165460935 + MIR SINE MIR 113 225 -37 2358 100 7 0 chr6 23818803 23819113 -165460441 - AluSp SINE Alu -1 312 1 261 293 49 0 chr6 23820892 23820974 -165458580 + MIR SINE MIR 43 128 -80 947 237 25 25 chr6 23820983 23821219 -165458335 - MER115 DNA AcHobo 0 693 458 2269 84 7 0 chr6 23821572 23821857 -165457697 + AluSp SINE Alu 1 287 -26 599 208 9 0 chr6 23822366 23822472 -165457082 - AluSq/x SINE Alu -205 108 2 189 0 0 0 chr6 23822498 23822519 -165457035 + (A)n Simple_repeat Simple_repeat 1 21 0 1829 117 41 0 chr6 23822622 23822888 -165456666 - AluSq SINE Alu -32 281 5 1994 129 6 13 chr6 23822947 23823258 -165456296 - AluSq SINE Alu -4 309 1 232 222 69 0 chr6 23823352 23823424 -165456130 - L1ME LINE L1 -395 5726 5650 386 242 84 47 chr6 23823492 23823764 -165455790 - L1ME3A LINE L1 -4 6166 5839 2256 112 0 0 chr6 23823804 23824109 -165455445 - AluSq SINE Alu -8 305 1 1537 181 29 7 chr6 23824188 23824465 -165455089 - AluJo SINE Alu -29 283 1 422 189 0 22 chr6 23824465 23824555 -165454999 - L1ME3A LINE L1 -738 5440 5353 398 151 161 0 chr6 23824566 23824659 -165454895 - L1MA4 LINE L1 -1 6299 6192 * 953 272 46 48 chr6 23824650 23824730 -165454824 - L1ME3A LINE L1 -780 5366 5287 2368 63 7 3 chr6 23824730 23825029 -165454525 - AluY SINE Alu -11 300 1 953 272 46 48 chr6 23825029 23825444 -165454110 - L1ME3A LINE L1 -859 5287 4872 708 242 46 16 chr6 23826851 23827045 -165452509 - MIR SINE MIR 0 262 63 2638 59 3 0 chr6 23827109 23827415 -165452139 - AluSp SINE Alu -6 307 1 1855 102 88 0 chr6 23827661 23827935 -165451619 - AluSg SINE Alu -12 298 1 2202 119 0 0 chr6 23827937 23828230 -165451324 - AluSg SINE Alu -16 294 2 1882 160 10 0 chr6 23828334 23828622 -165450932 - AluJb SINE Alu -21 291 1 22 35 0 0 chr6 23828838 23828867 -165450687 + AT_rich Low_complexity Low_complexity 1 29 0 2338 83 0 20 chr6 23829105 23829405 -165450149 - AluSg SINE Alu -16 294 1 450 288 112 38 chr6 23829430 23829743 -165449811 - L1ME3 LINE L1 -206 5956 5621 892 212 27 54 chr6 23830136 23830358 -165449196 + MER20 DNA MER1_type 1 216 -3 342 247 0 0 chr6 23830364 23830437 -165449117 + MER20 DNA MER1_type 134 206 -13 1950 145 7 3 chr6 23830504 23830793 -165448761 + AluJb SINE Alu 1 290 -22 283 176 39 0 chr6 23833423 23833474 -165446080 + MIR SINE MIR 77 129 -133 2379 68 7 3 chr6 23833563 23833859 -165445695 - AluSc SINE Alu -12 297 1 879 235 6 0 chr6 23834339 23834518 -165445036 + MER58A DNA MER1_type 44 223 -1 342 0 0 0 chr6 23834574 23834612 -165444942 + (CA)n Simple_repeat Simple_repeat 2 39 0 182 214 24 0 chr6 23835563 23835605 -165443949 + MIR SINE MIR 214 256 -6 238 354 52 0 chr6 23835724 23835820 -165443734 - L2 LINE L2 -35 3237 3137 1217 202 48 61 chr6 23835980 23836315 -165443239 + MLT1A1 LTR MaLR 1 361 -35 1528 189 25 4 chr6 23836315 23836595 -165442959 - AluJo SINE Alu -26 286 1 313 209 15 0 chr6 23836595 23836662 -165442892 + MLT1A1 LTR MaLR 298 365 0 201 74 0 0 chr6 23837136 23837163 -165442391 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 311 102 85 chr6 23838367 23838672 -165440882 - L2 LINE L2 -1 3271 2962 192 239 42 28 chr6 23838672 23838743 -165440811 + L2 LINE L2 2887 2958 -356 431 257 18 1 chr6 23839372 23839492 -165440062 - L1ME3A LINE L1 -5 6157 6038 2281 86 3 46 chr6 23839591 23839875 -165439679 + AluSp SINE Alu 1 271 -42 213 39 0 0 chr6 23839875 23839901 -165439653 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2281 86 3 46 chr6 23839901 23839943 -165439611 + AluSp SINE Alu 271 313 0 686 270 41 10 chr6 23840337 23840533 -165439021 + MIR SINE MIR 47 248 -14 1451 188 30 13 chr6 23840891 23841189 -165438365 + AluJo SINE Alu 10 312 0 1499 178 7 22 chr6 23841570 23841840 -165437714 - AluJo SINE Alu -46 266 1 1911 66 4 0 chr6 23842220 23842447 -165437107 - AluSx SINE Alu -84 228 1 183 162 0 0 chr6 23842597 23842634 -165436920 + (TATG)n Simple_repeat Simple_repeat 3 39 0 381 225 39 126 chr6 23842693 23842875 -165436679 - MIR SINE MIR -78 184 19 204 37 0 0 chr6 23842919 23842928 -165436626 + (CAA)n Simple_repeat Simple_repeat 3 11 -18 2310 56 7 3 chr6 23842928 23843215 -165436339 + AluY SINE Alu 1 288 -23 204 37 0 0 chr6 23843215 23843232 -165436322 + (CAA)n Simple_repeat Simple_repeat 10 29 0 2487 65 3 3 chr6 23843897 23844203 -165435351 + AluSx SINE Alu 1 306 -6 270 0 0 0 chr6 23844203 23844233 -165435321 + (TA)n Simple_repeat Simple_repeat 2 31 0 323 306 40 81 chr6 23844238 23844326 -165435228 - L3 LINE CR1 -637 940 850 1730 182 3 0 chr6 23844326 23844612 -165434942 - AluJo SINE Alu -21 291 5 323 306 40 81 chr6 23844612 23844745 -165434809 - L3 LINE CR1 -727 850 728 2483 84 0 0 chr6 23845052 23845360 -165434194 - AluSg SINE Alu -2 308 1 1388 69 6 0 chr6 23845591 23845766 -165433788 - AluY SINE Alu -6 305 130 2330 85 0 3 chr6 23845839 23846132 -165433422 - AluSc SINE Alu -17 292 1 1103 77 0 0 chr6 23846170 23846300 -165433254 - AluY SINE Alu -181 130 1 193 211 0 0 chr6 23846300 23846338 -165433216 - L3 LINE CR1 -911 666 629 500 294 132 41 chr6 23846441 23847267 -165432287 - L1MEc LINE L1 -4639 1757 857 21 0 0 0 chr6 23848682 23848703 -165430851 + AT_rich Low_complexity Low_complexity 1 21 0 2305 102 0 3 chr6 23848716 23849020 -165430534 - AluSg SINE Alu -7 303 1 1986 122 4 4 chr6 23849203 23849481 -165430073 - AluSx SINE Alu -12 300 23 337 266 79 36 chr6 23849522 23849661 -165429893 - L2 LINE L2 -8 3305 3161 2257 81 0 36 chr6 23849923 23850230 -165429324 + AluSg SINE Alu 1 296 -14 1804 158 21 0 chr6 23850317 23850602 -165428952 - Tigger3(Golem) DNA MER2_type -1 3028 2738 2259 103 0 3 chr6 23850602 23850912 -165428642 + AluY SINE Alu 1 309 -2 812 148 75 37 chr6 23850912 23851160 -165428394 - Tigger3(Golem) DNA MER2_type -574 2455 19 23 33 0 0 chr6 23852047 23852077 -165427477 + AT_rich Low_complexity Low_complexity 1 30 0 277 274 67 19 chr6 23852112 23852249 -165427305 + MIR3 SINE MIR 58 205 -3 205 292 14 28 chr6 23852369 23852441 -165427113 - MER5B DNA MER1_type -45 133 63 2304 99 0 0 chr6 23852447 23852749 -165426805 - AluSg SINE Alu -8 302 1 672 193 6 17 chr6 23853770 23853951 -165425603 + (TGG)n Simple_repeat Simple_repeat 1 179 0 * 715 128 41 21 chr6 23853936 23854179 -165425375 + (ATGGTG)n Simple_repeat Simple_repeat 1 248 0 1561 158 55 22 chr6 23854829 23855102 -165424452 + AluJb SINE Alu 7 288 -24 1775 118 0 0 chr6 23855700 23855938 -165423616 - AluSx SINE Alu -28 284 47 2266 108 0 3 chr6 23855946 23856243 -165423311 - AluSx SINE Alu -16 296 1 2304 123 0 0 chr6 23857474 23857782 -165421772 - AluSx SINE Alu -4 308 1 310 322 301 0 chr6 23858082 23858228 -165421326 + L2 LINE L2 3080 3269 -3 1200 118 139 224 chr6 23858756 23859224 -165420330 - MSTA LTR MaLR 0 428 1 1340 226 50 77 chr6 23859558 23859925 -165419629 - L1M4 LINE L1 -3264 2882 2530 1993 156 0 3 chr6 23859925 23860232 -165419322 - AluSx SINE Alu -6 306 1 1340 226 50 77 chr6 23860232 23860360 -165419194 - L1M4 LINE L1 -3616 2530 2400 2108 122 0 10 chr6 23860369 23860673 -165418881 - AluSx SINE Alu -11 301 1 2538 210 59 36 chr6 23860673 23861355 -165418199 - L1MD2 LINE L1 -70 6683 6018 2272 105 3 3 chr6 23861355 23861659 -165417895 + AluSg SINE Alu 2 305 -5 2538 210 59 36 chr6 23861659 23861973 -165417581 - L1MD2 LINE L1 -735 6018 5713 1766 162 54 3 chr6 23861973 23862269 -165417285 - AluJo SINE Alu -1 311 1 2538 210 59 36 chr6 23862269 23862858 -165416696 - L1MD2 LINE L1 -1040 5713 5139 2033 85 48 4 chr6 23862858 23863166 -165416388 - AluY SINE Alu 0 320 1 2538 210 59 36 chr6 23863166 23863370 -165416184 - L1MD2 LINE L1 -1614 5139 1705 611 209 7 2 chr6 23863367 23863523 -165416031 - L1MB4 LINE L1 0 6174 6012 * 349 241 155 0 chr6 23863503 23863619 -165415935 - L1MD2 LINE L1 -4823 1717 1584 * 1424 94 0 0 chr6 23863628 23863808 -165415746 - AluSg/x SINE Alu -3 309 130 2288 110 0 0 chr6 23863813 23864114 -165415440 - AluSx SINE Alu -11 301 1 1541 246 9 97 chr6 23864156 23864838 -165414716 - L1MD2 LINE L1 -4995 1548 927 273 348 41 37 chr6 23865436 23865680 -165413874 - L1MD2 LINE L1 -6279 261 17 1492 174 87 24 chr6 23865905 23866192 -165413362 + AluJo SINE Alu 1 305 -7 232 277 54 84 chr6 23866578 23866744 -165412810 - LTR33A LTR ERVL -6 517 357 233 234 62 31 chr6 23866907 23866971 -165412583 - LTR33A LTR ERVL -401 122 57 213 288 68 27 chr6 23867097 23867170 -165412384 + L2 LINE L2 3153 3228 -44 2388 92 0 0 chr6 23867490 23867793 -165411761 + AluSg SINE Alu 1 303 -7 315 250 90 10 chr6 23868267 23868367 -165411187 - MIR SINE MIR -14 248 141 2162 133 0 0 chr6 23868367 23868676 -165410878 - AluSx SINE Alu -3 309 1 24 0 0 0 chr6 23869423 23869447 -165410107 + AT_rich Low_complexity Low_complexity 1 24 0 350 250 24 65 chr6 23871666 23871790 -165407764 - L2 LINE L2 0 3313 3195 626 245 63 0 chr6 23872255 23872398 -165407156 + Charlie1 DNA MER1_type 2 153 -2608 2266 189 84 60 chr6 23872402 23872873 -165406681 + Charlie1 DNA MER1_type 2080 2538 -223 2043 134 0 0 chr6 23872873 23873165 -165406389 - AluSx SINE Alu -20 292 1 2266 189 84 60 chr6 23873165 23873299 -165406255 + Charlie1 DNA MER1_type 2538 2705 -56 843 154 15 0 chr6 23873299 23873429 -165406125 - FLAM_A SINE Alu -1 132 1 2266 189 84 60 chr6 23873429 23873488 -165406066 + Charlie1 DNA MER1_type 2705 2761 0 193 229 217 12 chr6 23874189 23874272 -165405282 + L2 LINE L2 2694 2793 -521 189 0 0 0 chr6 23874720 23874741 -165404813 + (TG)n Simple_repeat Simple_repeat 2 22 0 1760 182 22 14 chr6 23875207 23875578 -165403976 - MLT1A1 LTR MaLR 0 365 1 232 296 14 0 chr6 23875636 23875707 -165403847 + (ATGGTG)n Simple_repeat Simple_repeat 3 74 0 465 257 69 57 chr6 23875769 23875944 -165403610 - MIR SINE MIR -70 192 16 1620 155 3 71 chr6 23876529 23876838 -165402716 + AluJo SINE Alu 4 291 -21 338 347 8 8 chr6 23876888 23877009 -165402545 + MIR SINE MIR 33 153 -55 182 91 30 0 chr6 23877295 23877328 -165402226 + CT-rich Low_complexity Low_complexity 1 34 0 4406 240 58 17 chr6 23877374 23877604 -165401950 + L1MC4 LINE L1 6464 6683 -1359 356 71 18 0 chr6 23877604 23877660 -165401894 + (CA)n Simple_repeat Simple_repeat 1 57 0 4406 240 58 17 chr6 23877660 23878652 -165400902 + L1MC4 LINE L1 6683 7736 -306 360 273 0 0 chr6 23878643 23878731 -165400823 + L1MC4 LINE L1 7955 8042 0 * 860 255 59 8 chr6 23879047 23879286 -165400268 + MIR SINE MIR 12 262 0 1690 56 0 73 chr6 23879350 23879463 -165400091 + L1PA8 LINE L1 5956 6045 -127 2133 114 20 3 chr6 23879463 23879762 -165399792 + AluSg SINE Alu 3 306 -4 1690 56 0 73 chr6 23879762 23879882 -165399672 + L1PA8 LINE L1 6045 6172 0 320 268 28 0 chr6 23881147 23881218 -165398336 + MIR SINE MIR 14 86 -176 2140 149 0 0 chr6 23881267 23881576 -165397978 + AluSx SINE Alu 1 309 -3 2319 79 6 19 chr6 23882034 23882351 -165397203 + AluSq SINE Alu 1 313 0 1438 186 65 21 chr6 23882441 23882732 -165396822 - AluJo SINE Alu -8 304 1 3918 183 5 32 chr6 23884892 23885642 -165393912 - L1MB7 LINE L1 -19 6165 5436 225 289 98 123 chr6 23885691 23885729 -165393825 + L2 LINE L2 3036 3073 -199 2180 133 50 42 chr6 23885729 23886090 -165393464 - THE1B LTR MaLR 0 364 1 225 289 98 123 chr6 23886090 23886255 -165393299 + L2 LINE L2 3073 3234 -38 2355 95 3 0 chr6 23886431 23886735 -165392819 - AluSp SINE Alu -4 309 5 308 309 53 0 chr6 23887890 23887984 -165391570 + MIR SINE MIR 48 146 -116 2538 51 0 0 chr6 23888417 23888713 -165390841 - AluY SINE Alu -15 296 1 25 0 0 0 chr6 23888723 23888748 -165390806 + AT_rich Low_complexity Low_complexity 1 25 0 526 240 40 7 chr6 23888806 23888956 -165390598 - L1MD3 LINE L1 -5 7990 7836 379 308 60 14 chr6 23889066 23889231 -165390323 + MIR SINE MIR 12 186 -67 186 340 0 0 chr6 23889286 23889336 -165390218 - L3b LINE CR1 -255 1328 1279 447 259 74 19 chr6 23890647 23890809 -165388745 - MER112 DNA MER1_type 0 260 90 545 293 73 61 chr6 23891015 23891999 -165387555 - L1ME3A LINE L1 -233 5937 4924 366 261 65 65 chr6 23892023 23892190 -165387364 - L1ME3A LINE L1 -1325 4821 4652 2266 117 0 0 chr6 23892190 23892497 -165387057 - AluSx SINE Alu -5 307 1 366 261 65 65 chr6 23892497 23892654 -165386900 - L1ME3A LINE L1 -1493 4653 4497 1412 161 27 0 chr6 23892879 23893102 -165386452 + MER46A DNA MER2_type 8 236 0 387 41 0 0 chr6 23893976 23894025 -165385529 + (TG)n Simple_repeat Simple_repeat 1 49 0 352 328 91 20 chr6 23894588 23894786 -165384768 + MIR SINE MIR 32 243 -19 305 262 0 0 chr6 23895064 23895125 -165384429 + L2 LINE L2 3148 3208 -64 187 286 29 0 chr6 23896467 23896537 -165383017 - MIR SINE MIR -27 235 164 330 87 0 0 chr6 23897228 23897274 -165382280 + (TG)n Simple_repeat Simple_repeat 2 47 0 298 270 27 36 chr6 23897587 23897698 -165381856 + MIR3 SINE MIR 95 204 -4 742 100 91 0 chr6 23897985 23898095 -165381459 + AluSp/q SINE Alu 176 295 -18 323 301 35 26 chr6 23898263 23898376 -165381178 - MIR SINE MIR -95 167 54 858 244 5 29 chr6 23899120 23899329 -165380225 - MER3 DNA MER1_type -5 204 1 22 0 0 0 chr6 23902720 23902742 -165376812 + AT_rich Low_complexity Low_complexity 1 22 0 187 235 153 35 chr6 23903659 23903744 -165375810 - L3 LINE CR1 -781 796 702 338 370 72 24 chr6 23903769 23903977 -165375577 + MIR SINE MIR 45 262 0 1119 304 66 57 chr6 23903982 23904561 -165374993 - L3 LINE CR1 -876 701 118 30 0 0 0 chr6 23904897 23904927 -165374627 + AT_rich Low_complexity Low_complexity 1 30 0 376 362 119 4 chr6 23904957 23905192 -165374362 - MIR SINE MIR 0 262 1 22 35 0 0 chr6 23905351 23905380 -165374174 + AT_rich Low_complexity Low_complexity 1 29 0 2233 120 7 0 chr6 23905671 23905980 -165373574 + AluSx SINE Alu 1 311 -1 862 180 0 14 chr6 23907052 23907191 -165372363 - L1PA8A LINE L1 -2 6129 5993 2389 53 43 16 chr6 23907201 23907504 -165372050 - AluY SINE Alu 0 311 1 2328 105 3 0 chr6 23907814 23908119 -165371435 - AluSx SINE Alu -6 306 1 1837 185 0 10 chr6 23908154 23908468 -165371086 - AluJb SINE Alu -1 311 1 2452 80 0 3 chr6 23908478 23908789 -165370765 - AluY SINE Alu -1 310 1 865 163 39 79 chr6 23908789 23908967 -165370587 - FAM SINE Alu -4 171 1 1158 223 37 25 chr6 23909049 23909372 -165370182 + L1M4 LINE L1 2715 3041 -3105 279 228 83 119 chr6 23909424 23909540 -165370014 + L1ME3 LINE L1 5960 6068 -94 1799 209 48 19 chr6 23909540 23909917 -165369637 + MLT1B LTR MaLR 3 390 0 279 228 83 119 chr6 23909917 23909993 -165369561 + L1ME3 LINE L1 6068 6145 -17 196 164 104 45 chr6 23910164 23910231 -165369323 + MIR SINE MIR 160 230 -32 225 239 57 11 chr6 23910872 23910960 -165368594 + CT-rich Low_complexity Low_complexity 4 95 0 2842 162 96 23 chr6 23912741 23913302 -165366252 - MER6A DNA MER2_type -2 603 2 21 36 0 0 chr6 23913497 23913525 -165366029 + AT_rich Low_complexity Low_complexity 1 28 0 1796 70 0 0 chr6 23913844 23914059 -165365495 - AluSg/x SINE Alu -13 299 85 733 291 36 55 chr6 23914990 23915243 -165364311 - MIR SINE MIR 0 262 16 2168 61 61 7 chr6 23915985 23916265 -165363289 + AluSq SINE Alu 1 295 -18 2462 66 0 10 chr6 23916861 23917166 -165362388 - AluY SINE Alu -9 302 1 275 294 0 24 chr6 23917326 23917411 -165362143 + MER103 DNA DNA 68 150 -16 2075 101 40 0 chr6 23917583 23917861 -165361693 - AluSq SINE Alu -24 289 1 2230 99 18 27 chr6 23917941 23918275 -165361279 + MER1B DNA MER1_type 1 331 -8 1838 107 0 0 chr6 23918450 23918694 -165360860 + AluSg SINE Alu 1 244 -66 1455 217 14 0 chr6 23919613 23919890 -165359664 - AluJo SINE Alu -31 281 1 704 264 126 29 chr6 23920425 23920664 -165358890 + MIR SINE MIR 1 262 0 208 271 17 0 chr6 23923302 23923361 -165356193 - L3 LINE CR1 -863 714 655 1897 171 7 0 chr6 23924594 23924899 -165354655 - AluJo SINE Alu -5 307 1 1462 199 211 28 chr6 23924970 23925397 -165354157 - MLT1D LTR MaLR 0 505 1 1805 156 10 26 chr6 23926398 23926700 -165352854 - AluJb SINE Alu -15 297 1 303 283 75 33 chr6 23927116 23927236 -165352318 - MIR SINE MIR -73 189 65 1381 143 0 23 chr6 23927708 23927925 -165351629 + AluJo SINE Alu 84 295 -17 207 314 0 0 chr6 23930497 23930548 -165349006 - L2 LINE L2 -21 3251 3201 570 270 97 42 chr6 23930574 23930811 -165348743 + MIR SINE MIR 3 252 -10 223 312 78 0 chr6 23930831 23930908 -165348646 - MIR SINE MIR -150 112 30 255 307 59 0 chr6 23931027 23931128 -165348426 + AluYb8 SINE Alu 194 300 -8 226 283 0 22 chr6 23932707 23932799 -165346755 + (CAGAGA)n Simple_repeat Simple_repeat 4 93 0 405 261 94 13 chr6 23933154 23933452 -165346102 - L1ME4a LINE L1 -5 6116 5755 1374 217 16 4 chr6 23934229 23934487 -165345067 + Tigger7 DNA MER2_type 7 267 -2220 562 143 0 57 chr6 23934484 23934589 -165344965 + Tigger7 DNA MER2_type 2388 2486 -1 * 2087 133 17 0 chr6 23935041 23935343 -165344211 - AluSq SINE Alu -6 307 1 1839 169 3 10 chr6 23935343 23935650 -165343904 - AluJo SINE Alu -7 305 1 4826 118 16 42 chr6 23935798 23936570 -165342984 - L1PA16 LINE L1 0 6166 5415 1922 115 65 4 chr6 23937346 23937625 -165341929 + AluSx SINE Alu 1 296 -16 370 306 93 22 chr6 23937636 23937819 -165341735 - MIR SINE MIR -47 215 20 274 321 121 80 chr6 23937867 23938457 -165341097 - L2 LINE L2 0 3272 2665 228 100 0 0 chr6 23939629 23939669 -165339885 + (A)n Simple_repeat Simple_repeat 1 40 0 2418 87 3 10 chr6 23940225 23940537 -165339017 + AluSg SINE Alu 1 310 0 239 189 288 23 chr6 23940707 23940810 -165338744 + MIR SINE MIR 32 154 -65 21 36 0 0 chr6 23941027 23941055 -165338499 + AT_rich Low_complexity Low_complexity 1 28 0 192 200 43 0 chr6 23941368 23941438 -165338116 + CT-rich Low_complexity Low_complexity 3 75 0 7759 187 31 13 chr6 23941451 23943973 -165335581 - L1MB3 LINE L1 0 6183 3710 2066 132 30 0 chr6 23943973 23944269 -165335285 + AluSx SINE Alu 1 305 -7 7759 187 31 13 chr6 23944269 23944322 -165335232 - L1MB3 LINE L1 -2473 3710 3659 2276 119 0 10 chr6 23944322 23944633 -165334921 - AluSq SINE Alu -5 308 1 7759 187 31 13 chr6 23944633 23944657 -165334897 - L1MB3 LINE L1 -2524 3659 3547 333 110 41 14 chr6 23945128 23945201 -165334353 + CT-rich Low_complexity Low_complexity 4 78 0 1234 177 100 17 chr6 23945217 23945516 -165334038 - MER33 DNA MER1_type 0 324 1 351 0 0 0 chr6 23947070 23947109 -165332445 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 1142 167 30 73 chr6 23947365 23947599 -165331955 - AluJb SINE Alu -6 306 83 526 261 167 22 chr6 23947751 23947973 -165331581 + MIR SINE MIR 9 262 0 393 22 0 0 chr6 23948135 23948181 -165331373 + (TG)n Simple_repeat Simple_repeat 1 46 0 256 270 112 34 chr6 23949375 23949553 -165330001 + MIR SINE MIR 14 205 -57 2156 110 0 26 chr6 23950203 23950511 -165329043 - AluSg SINE Alu -10 300 1 218 299 118 10 chr6 23950900 23951017 -165328537 + MIR SINE MIR 32 162 -46 2250 114 0 0 chr6 23951288 23951586 -165327968 - AluSx SINE Alu -14 298 1 22 0 0 0 chr6 23952390 23952412 -165327142 + AT_rich Low_complexity Low_complexity 1 22 0 302 347 8 8 chr6 23953146 23953267 -165326287 + MIR SINE MIR 29 149 -113 2121 100 17 0 chr6 23953489 23953780 -165325774 - AluY SINE Alu -15 296 1 2337 109 16 35 chr6 23954558 23954926 -165324628 + THE1B LTR MaLR 1 361 -3 244 253 58 23 chr6 23954942 23955029 -165324525 - MIR SINE MIR -109 153 64 480 295 75 44 chr6 23955340 23955567 -165323987 - MIR SINE MIR 0 262 29 25 0 0 0 chr6 23956094 23956119 -165323435 + AT_rich Low_complexity Low_complexity 1 25 0 425 318 105 76 chr6 23956247 23956590 -165322964 - L2 LINE L2 -6 3266 2914 2364 105 0 9 chr6 23956877 23957192 -165322362 - AluSx SINE Alu 0 312 1 813 98 33 0 chr6 23957197 23957319 -165322235 - L1PA16 LINE L1 -13 6153 6028 351 0 0 0 chr6 23958119 23958158 -165321396 + (CA)n Simple_repeat Simple_repeat 2 40 0 181 305 85 0 chr6 23959159 23959218 -165320336 + L2 LINE L2 3246 3309 -4 2295 57 40 3 chr6 23959926 23960222 -165319332 - AluY SINE Alu -4 307 1 21 0 0 0 chr6 23960409 23960430 -165319124 + AT_rich Low_complexity Low_complexity 1 21 0 1513 133 44 4 chr6 23960636 23960861 -165318693 + AluJb SINE Alu 1 234 -78 243 0 0 0 chr6 23960863 23960890 -165318664 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 870 190 105 10 chr6 23960964 23961164 -165318390 - MER20 DNA MER1_type 0 219 1 370 307 62 17 chr6 23963066 23963262 -165316292 + MIR SINE MIR 16 218 -44 252 0 0 0 chr6 23964444 23964472 -165315082 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2225 121 0 0 chr6 23964888 23965193 -165314361 + AluSx SINE Alu 1 305 -7 1564 189 3 28 chr6 23966449 23966766 -165312788 + AluJb SINE Alu 1 309 -3 1807 89 0 0 chr6 23966921 23967145 -165312409 + AluSx SINE Alu 1 224 -88 328 257 80 52 chr6 23967716 23967965 -165311589 + L1ME LINE L1 5561 5816 -305 286 180 66 0 chr6 23968343 23968404 -165311150 - L2 LINE L2 0 3313 3249 2232 121 0 0 chr6 23968542 23968839 -165310715 + AluSq SINE Alu 1 297 -16 2053 203 58 37 chr6 23971050 23971670 -165307884 - L1MC3 LINE L1 -1 7784 7152 190 247 118 54 chr6 23971672 23971765 -165307789 + MIR SINE MIR 164 262 0 2191 116 30 0 chr6 23972969 23973272 -165306282 - AluSx SINE Alu 0 312 1 261 0 0 0 chr6 23973510 23973539 -165306015 + (TG)n Simple_repeat Simple_repeat 2 30 0 716 264 56 44 chr6 23973600 23973960 -165305594 + MLT1I LTR MaLR 46 409 0 366 80 0 0 chr6 23974252 23974302 -165305252 + (CA)n Simple_repeat Simple_repeat 2 51 0 200 200 0 25 chr6 23975235 23975275 -165304279 + CT-rich Low_complexity Low_complexity 2 40 0 581 269 114 14 chr6 23976939 23977300 -165302254 - HAL1 LINE L1 -1043 1464 1068 3940 91 6 0 chr6 23977301 23977842 -165301712 + L1PA10 LINE L1 5612 6155 -13 234 211 19 0 chr6 23978609 23978661 -165300893 + CT-rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr6 23978837 23978866 -165300688 + AT_rich Low_complexity Low_complexity 1 29 0 647 62 0 21 chr6 23979407 23979504 -165300050 + AluSx SINE Alu 214 308 -2 25 31 0 0 chr6 23979577 23979609 -165299945 + AT_rich Low_complexity Low_complexity 1 32 0 1470 187 39 14 chr6 23979622 23979906 -165299648 - AluJb SINE Alu -21 291 1 315 0 0 0 chr6 23980685 23980720 -165298834 + (TAA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr6 23981424 23981452 -165298102 + AT_rich Low_complexity Low_complexity 1 28 0 642 293 250 5 chr6 23981556 23982023 -165297531 - L2 LINE L2 -41 3272 2666 1202 196 4 13 chr6 23982023 23982248 -165297306 - MER58A DNA MER1_type 0 224 2 761 181 142 60 chr6 23982612 23982893 -165296661 - MER33 DNA MER1_type 0 324 21 2356 101 10 7 chr6 23983177 23983485 -165296069 - AluSx SINE Alu -3 309 1 1724 175 3 32 chr6 23983910 23984219 -165295335 - AluJb SINE Alu -12 300 1 1363 119 0 30 chr6 23984219 23984421 -165295133 + AluJb SINE Alu 115 310 -2 901 262 33 0 chr6 23985168 23985378 -165294176 - MIR SINE MIR -39 223 7 238 333 73 18 chr6 23987366 23987531 -165292023 + MIR SINE MIR 14 187 -75 420 220 89 3 chr6 23987588 23987715 -165291839 + L1ME2 LINE L1 3523 3659 -2487 1612 275 23 17 chr6 23987780 23988423 -165291131 + L1ME2 LINE L1 3797 4443 -1703 658 173 0 16 chr6 23988424 23988551 -165291003 + 7SK RNA RNA 1 125 -68 466 66 0 0 chr6 23988601 23988662 -165290892 + 7SK RNA RNA 133 193 0 2283 241 99 17 chr6 23988662 23989344 -165290210 + L1ME2 LINE L1 4431 5056 -1110 1932 149 10 10 chr6 23989344 23989646 -165289908 + AluJb SINE Alu 1 302 -10 2283 241 99 17 chr6 23989646 23990535 -165289019 + L1ME2 LINE L1 5056 6148 -18 252 293 24 42 chr6 23990557 23990769 -165288785 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 23991536 23991611 -165287943 - MIR3 SINE MIR -17 191 116 2666 227 69 39 chr6 23992307 23994262 -165285292 - L1ME1 LINE L1 -5 6555 4544 480 90 0 0 chr6 23994260 23994327 -165285227 + L1PA16 LINE L1 6061 6127 -39 * 267 248 83 8 chr6 23994325 23994446 -165285108 - L1ME1 LINE L1 -2248 4292 4163 * 1442 136 50 12 chr6 23994451 23994693 -165284861 - Tigger3(Golem) DNA MER2_type -7 3022 2772 233 200 0 0 chr6 23994690 23994730 -165284824 - Tigger3(Golem) DNA MER2_type -2887 142 103 * 757 183 0 16 chr6 23994730 23994856 -165284698 - Tigger3(Golem) DNA MER2_type -2905 124 1 375 333 64 4 chr6 23994864 23995113 -165284441 - L1ME1 LINE L1 -2383 4157 3894 28 29 0 0 chr6 23995118 23995153 -165284401 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 23995224 23995259 -165284295 + AT_rich Low_complexity Low_complexity 1 35 0 255 243 151 19 chr6 23995268 23995474 -165284080 - L1ME1 LINE L1 -2702 3838 3606 772 138 0 0 chr6 23995480 23995596 -165283958 - Tigger3(Golem) DNA MER2_type -95 2934 2819 291 174 228 0 chr6 23995537 23995629 -165283925 + Tigger3(Golem) DNA MER2_type 2828 2940 -89 * 1895 273 44 52 chr6 23995795 23996045 -165283509 - L1ME1 LINE L1 -4029 2511 2261 806 168 8 0 chr6 23996045 23996176 -165283378 + FLAM_C SINE Alu 1 132 -1 1895 273 44 52 chr6 23996176 23997026 -165282528 - L1ME1 LINE L1 -4279 2261 1406 2393 142 23 2 chr6 23997026 23997421 -165282133 + MER57A LTR ERV1 1 403 0 1895 273 44 52 chr6 23997421 23997477 -165282077 - L1ME1 LINE L1 -5134 1406 1361 1995 152 30 30 chr6 23997477 23997840 -165281714 - THE1B LTR MaLR -1 363 1 1895 273 44 52 chr6 23997840 23997859 -165281695 - L1ME1 LINE L1 -5179 1361 1343 1514 163 32 104 chr6 23997865 23998240 -165281314 + MER7A DNA MER2_type 1 346 0 295 275 36 84 chr6 23998519 23998686 -165280868 - L1ME1 LINE L1 -5522 1008 850 358 295 109 67 chr6 23998844 23999129 -165280425 - L1ME1 LINE L1 -6187 353 57 1433 131 65 128 chr6 23999230 23999551 -165280003 + AluJo SINE Alu 1 301 -11 1237 236 74 54 chr6 24000609 24001108 -165278446 - L1ME2 LINE L1 -1 6163 5655 386 337 53 24 chr6 24001456 24001625 -165277929 + L2 LINE L2 3098 3271 -1 189 0 0 0 chr6 24001913 24001934 -165277620 + (CA)n Simple_repeat Simple_repeat 2 22 0 529 286 108 25 chr6 24004566 24004807 -165274747 - L2 LINE L2 -17 3296 3036 1426 152 156 7 chr6 24004928 24005198 -165274356 - AluJb SINE Alu -2 310 1 22 35 0 0 chr6 24005213 24005242 -165274312 + AT_rich Low_complexity Low_complexity 1 29 0 2669 220 93 17 chr6 24005255 24006025 -165273529 - L1ME2 LINE L1 -137 6027 5146 2259 118 0 0 chr6 24006025 24006329 -165273225 - AluSx SINE Alu -8 304 1 2669 220 93 17 chr6 24006329 24006644 -165272910 - L1ME2 LINE L1 -1018 5146 4856 988 291 103 28 chr6 24006660 24007193 -165272361 + L1MCc LINE L1 26 598 -5825 531 259 61 0 chr6 24007418 24007565 -165271989 - MIR SINE MIR -105 157 2 345 352 58 46 chr6 24007565 24007959 -165271595 - L2 LINE L2 -1229 2085 1687 2323 109 7 0 chr6 24007961 24008264 -165271290 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 24009875 24009897 -165269657 + AT_rich Low_complexity Low_complexity 1 22 0 313 192 55 0 chr6 24010829 24010902 -165268652 - L1MC3 LINE L1 -1139 6646 6570 378 0 0 0 chr6 24010940 24010982 -165268572 + (CA)n Simple_repeat Simple_repeat 2 43 0 2030 114 48 0 chr6 24010991 24011280 -165268274 - AluSx SINE Alu -9 303 1 257 279 59 0 chr6 24012079 24012147 -165267407 + MIR SINE MIR 107 178 -84 22 0 0 0 chr6 24013394 24013416 -165266138 + AT_rich Low_complexity Low_complexity 1 22 0 194 264 69 28 chr6 24013564 24013636 -165265918 - MIR SINE MIR -70 192 118 198 0 0 0 chr6 24014224 24014246 -165265308 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 233 305 133 9 chr6 24016501 24016606 -165262948 + MIR SINE MIR 104 221 -41 1787 173 6 19 chr6 24016762 24017074 -165262480 - AluJb SINE Alu -4 308 1 299 316 0 0 chr6 24021559 24021638 -165257916 - L2 LINE L2 -5 3267 3189 213 39 0 0 chr6 24021948 24021974 -165257580 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 2539 126 70 108 chr6 24023090 24023269 -165256285 - LTR49 LTR ERV1 -7 588 404 1598 175 0 69 chr6 24023269 24023469 -165256085 - AluJo SINE Alu 0 312 100 1820 149 0 11 chr6 24023469 24023750 -165255804 + AluSx SINE Alu 1 278 -34 369 0 0 0 chr6 24023760 24023801 -165255753 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 67 0 0 chr6 24023800 24023830 -165255724 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1598 175 0 69 chr6 24023801 24023950 -165255604 - AluJo SINE Alu -221 91 4 2539 126 70 108 chr6 24023950 24023968 -165255586 - LTR49 LTR ERV1 -191 404 387 2664 29 7 0 chr6 24023968 24024277 -165255277 - AluY SINE Alu 0 311 1 2265 110 0 3 chr6 24024286 24024595 -165254959 - AluSg SINE Alu -2 308 1 2539 126 70 108 chr6 24024595 24024997 -165254557 - LTR49 LTR ERV1 -216 379 1 317 234 28 8 chr6 24025523 24025646 -165253908 + L1MC4 LINE L1 1996 6983 -1339 * 339 253 0 22 chr6 24025638 24025729 -165253825 + L1MC4 LINE L1 6895 6983 -1339 300 111 0 0 chr6 24025738 24025783 -165253771 + (TG)n Simple_repeat Simple_repeat 2 46 0 249 213 0 0 chr6 24026258 24026305 -165253249 - MIR SINE MIR -122 140 94 2227 97 0 35 chr6 24026517 24026827 -165252727 - AluSx SINE Alu -12 300 2 2213 109 0 0 chr6 24027076 24027380 -165252174 + AluSx SINE Alu 1 304 -8 1906 152 0 23 chr6 24027464 24027774 -165251780 - AluJb SINE Alu -3 309 7 7725 194 27 23 chr6 24029204 24031752 -165247802 - L1PA15 LINE L1 0 6165 3594 231 357 0 0 chr6 24031815 24031885 -165247669 - MIR SINE MIR -188 74 5 26 30 0 0 chr6 24032075 24032108 -165247446 + AT_rich Low_complexity Low_complexity 1 33 0 4512 169 53 4 chr6 24032108 24033262 -165246292 - L1PB4 LINE L1 -4 6152 4944 2098 119 80 14 chr6 24033673 24034025 -165245529 + THE1C LTR MaLR 1 375 0 646 90 0 0 chr6 24034428 24034517 -165245037 - AluSp/q SINE Alu -7 306 218 461 306 119 96 chr6 24034525 24036002 -165243552 + L2 LINE L2 1616 3127 -145 2385 202 87 14 chr6 24036002 24036566 -165242988 - MER77 LTR ERV1 0 605 1 461 306 119 96 chr6 24036566 24036716 -165242838 + L2 LINE L2 3127 3272 0 280 232 16 40 chr6 24037018 24037143 -165242411 + (CATAT)n Simple_repeat Simple_repeat 2 123 0 780 166 13 0 chr6 24037512 24037663 -165241891 + L1MC3 LINE L1 6961 7113 -672 285 277 36 0 chr6 24037666 24037749 -165241805 + MLT1F1 LTR MaLR 54 139 -428 2780 132 83 17 chr6 24037754 24038283 -165241271 + L1MC3 LINE L1 7202 7765 -20 469 294 81 30 chr6 24039436 24039633 -165239921 + MIR SINE MIR 20 226 -36 594 272 157 7 chr6 24039753 24039956 -165239598 + MIR SINE MIR 3 235 -27 255 286 109 41 chr6 24040121 24040268 -165239286 - MARNA DNA Mariner -83 503 347 271 340 7 100 chr6 24042394 24042544 -165237010 - MIR3 SINE MIR -63 145 10 1795 131 13 61 chr6 24042744 24043056 -165236498 - AluJb SINE Alu -15 297 1 600 366 83 18 chr6 24043208 24043604 -165235950 + L3 LINE CR1 931 1352 -225 520 117 0 0 chr6 24043647 24043724 -165235830 - Alu SINE Alu -2 310 234 225 216 34 102 chr6 24095005 24095093 -165184461 + L2 LINE L2 3156 3237 -76 489 343 47 0 chr6 24095508 24095680 -165183874 + MIR3 SINE MIR 16 195 -13 611 266 56 20 chr6 24095727 24095980 -165183574 - MIR SINE MIR 0 262 2 * 685 318 104 45 chr6 24095980 24096371 -165183183 + L2 LINE L2 2866 3281 -32 225 0 0 0 chr6 24097627 24097652 -165181902 + (TG)n Simple_repeat Simple_repeat 2 26 0 1418 100 23 77 chr6 24098208 24098469 -165181085 + AluY SINE Alu 29 275 -36 3151 211 48 26 chr6 24098628 24099555 -165179999 - L1M2c LINE L1 -4458 2331 1385 305 310 89 13 chr6 24099960 24100118 -165179436 + MIR SINE MIR 79 248 -14 2172 199 69 2 chr6 24100222 24100658 -165178896 - MER70A LTR ERVL -5 467 3 542 243 117 24 chr6 24100773 24100979 -165178575 - MIR SINE MIR -1 261 37 422 222 72 52 chr6 24101679 24101823 -165177731 - MER112 DNA MER1_type -31 229 80 2987 215 23 8 chr6 24101823 24102466 -165177088 + MER82 DNA MER2_type 1 653 0 224 244 37 85 chr6 24102909 24102991 -165176563 + MIR SINE MIR 50 127 -81 218 213 38 12 chr6 24103096 24103176 -165176378 + (TA)n Simple_repeat Simple_repeat 2 83 0 882 217 0 0 chr6 24104985 24105146 -165174408 + FRAM SINE Alu 4 164 -2 1333 231 71 47 chr6 24105533 24105984 -165173570 - MLT1C LTR MaLR 0 467 6 1370 242 104 23 chr6 24106197 24107162 -165172392 + L1MC4 LINE L1 6472 7666 -376 1330 13 0 0 chr6 24107330 24107481 -165172073 + L1PA5 LINE L1 5993 6143 -11 30 27 0 0 chr6 24107481 24107518 -165172036 + AT_rich Low_complexity Low_complexity 1 37 0 1852 168 14 0 chr6 24108710 24108995 -165170559 + AluJb SINE Alu 9 297 -15 845 244 24 0 chr6 24109582 24109791 -165169763 + MER58A DNA MER1_type 4 217 -7 2243 104 0 17 chr6 24110321 24110618 -165168936 + AluSx SINE Alu 11 302 -10 1134 243 19 26 chr6 24111833 24112142 -165167412 - MER21B LTR ERV1 -460 403 97 375 228 0 13 chr6 24112194 24112273 -165167281 - MER21B LTR ERV1 -774 89 12 2117 176 61 117 chr6 24112692 24113427 -165166127 - LTR8A LTR ERV1 0 727 34 1082 226 51 72 chr6 24113440 24113910 -165165644 + MER39 LTR ERV1 248 707 0 2202 113 7 0 chr6 24114777 24115070 -165164484 - AluSc SINE Alu -14 295 1 183 246 148 0 chr6 24116151 24116212 -165163342 - L2 LINE L2 -15 3257 3188 204 244 0 93 chr6 24116707 24116793 -165162761 + MIR SINE MIR 114 191 -71 2108 107 61 35 chr6 24116855 24117170 -165162384 + MLT1B LTR MaLR 6 334 -56 2377 111 0 20 chr6 24117170 24117511 -165162043 + MER1B DNA MER1_type 1 334 -3 2108 107 61 35 chr6 24117511 24117570 -165161984 + MLT1B LTR MaLR 334 390 0 234 245 281 22 chr6 24117950 24118089 -165161465 - MIR SINE MIR -76 186 12 200 318 82 45 chr6 24118832 24118942 -165160612 + L2 LINE L2 2999 3112 -160 575 257 72 0 chr6 24119935 24120157 -165159397 + L1MB7 LINE L1 5947 6184 0 1036 196 107 66 chr6 24120760 24121107 -165158447 + MLT1A2 LTR MaLR 1 361 -13 2176 143 24 14 chr6 24121590 24121961 -165157593 - THE1C LTR MaLR 0 375 1 370 278 63 8 chr6 24122170 24122296 -165157258 + MER94 DNA DNA 2 134 0 553 321 101 36 chr6 24122757 24123353 -165156201 + L1MEd LINE L1 700 1386 -4846 437 383 17 48 chr6 24123347 24123702 -165155852 + L1MEc LINE L1 223 566 -6021 * 2271 112 7 0 chr6 24124113 24124416 -165155138 + AluSx SINE Alu 1 305 -7 251 280 42 14 chr6 24124487 24124698 -165154856 + L1MEc LINE L1 1118 1335 -5071 383 263 75 56 chr6 24124774 24125093 -165154461 + L1MEc LINE L1 1541 1865 -4722 360 226 91 19 chr6 24125190 24125398 -165154156 + L1MEc LINE L1 2317 2539 -4048 1336 202 67 27 chr6 24125981 24126312 -165153242 - MER2 DNA MER2_type 0 344 1 1296 189 49 65 chr6 24127944 24128251 -165151303 - AluJo SINE Alu -10 302 1 6672 128 47 18 chr6 24129003 24130198 -165149356 + Tigger3b DNA MER2_type 3 1231 0 227 312 0 64 chr6 24130250 24130375 -165149179 - MLT1I LTR MaLR -195 214 98 227 213 96 43 chr6 24130344 24130438 -165149116 - MLT1H LTR MaLR -389 160 62 463 293 57 0 chr6 24130750 24130907 -165148647 - MIR SINE MIR -13 249 84 578 314 90 42 chr6 24130974 24131308 -165148246 - L3 LINE CR1 -100 1477 1128 1432 282 54 24 chr6 24132478 24132665 -165146889 + MLT1D LTR MaLR 1 181 -324 234 0 0 0 chr6 24132665 24132691 -165146863 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1432 282 54 24 chr6 24132691 24133105 -165146449 + MLT1D LTR MaLR 181 505 0 1328 173 101 36 chr6 24134916 24135194 -165144360 - AluJb SINE Alu -16 296 1 328 267 30 0 chr6 24136041 24136142 -165143412 - MER5A DNA MER1_type -76 113 10 22 56 0 0 chr6 24136618 24136654 -165142900 + AT_rich Low_complexity Low_complexity 1 36 0 407 281 41 20 chr6 24138599 24138745 -165140809 + L2 LINE L2 537 685 -2629 266 290 32 40 chr6 24138802 24138926 -165140628 + MLT1I LTR MaLR 99 221 -188 3687 300 108 7 chr6 24139103 24140545 -165139009 + L2 LINE L2 691 2277 -1037 2242 105 26 42 chr6 24140859 24141240 -165138314 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr6 24141444 24141469 -165138085 + AT_rich Low_complexity Low_complexity 1 25 0 2433 22 0 4 chr6 24141520 24141797 -165137757 + AluYa5 SINE Alu 36 311 0 279 319 175 19 chr6 24141924 24142084 -165137470 + MIR3 SINE MIR 11 195 -13 364 206 103 59 chr6 24142937 24143141 -165136413 + MLT1K LTR MaLR 357 569 -19 1257 220 117 93 chr6 24143483 24144191 -165135363 - MER50 LTR ERV1 0 734 10 831 302 64 41 chr6 24144560 24144956 -165134598 - HERV16 LTR ERVL -4279 717 303 799 222 16 11 chr6 24144956 24145141 -165134413 + MER5A DNA MER1_type 2 187 -2 831 302 64 41 chr6 24145141 24145304 -165134250 - HERV16 LTR ERVL -4693 303 145 268 236 0 0 chr6 24145364 24145419 -165134135 + MLT1K LTR MaLR 534 588 0 1234 261 59 39 chr6 24146242 24146683 -165132871 - LTR16A1 LTR ERVL -2 455 6 479 240 64 0 chr6 24146730 24146855 -165132699 - MIR SINE MIR -9 253 121 1793 193 56 13 chr6 24147299 24147673 -165131881 + MLT1B LTR MaLR 1 390 0 2041 161 23 40 chr6 24147790 24147858 -165131696 - MLT1B LTR MaLR 0 390 322 2377 95 0 0 chr6 24147858 24148164 -165131390 - AluSc SINE Alu -3 306 1 2041 161 23 40 chr6 24148164 24148492 -165131062 - MLT1B LTR MaLR -68 322 1 981 240 128 58 chr6 24148883 24149345 -165130209 + LTR33A LTR ERVL 1 494 -29 239 306 0 14 chr6 24149971 24150043 -165129511 + MER5B DNA MER1_type 106 176 -2 1867 150 42 36 chr6 24150182 24150542 -165129012 + THE1B LTR MaLR 1 362 -2 2800 115 49 0 chr6 24150773 24151181 -165128373 + MSTC LTR MaLR 1 428 0 465 317 75 22 chr6 24152622 24152849 -165126705 + MIR SINE MIR 1 239 -23 394 322 106 21 chr6 24153546 24153782 -165125772 + MIR SINE MIR 1 256 -6 227 253 173 0 chr6 24154580 24154655 -165124899 - MIR3 SINE MIR 0 208 121 314 350 142 9 chr6 24154826 24155052 -165124502 + MIR SINE MIR 3 258 -4 9513 200 46 4 chr6 24155074 24157338 -165122216 + L1PBa LINE L1 2660 5012 -1850 27 0 0 0 chr6 24158407 24158434 -165121120 + AT_rich Low_complexity Low_complexity 1 27 0 46 0 0 18 chr6 24158534 24158575 -165120979 + AT_rich Low_complexity Low_complexity 1 42 -14 2169 55 55 7 chr6 24158575 24158846 -165120708 + AluY SINE Alu 6 289 -22 46 0 0 18 chr6 24158846 24158861 -165120693 + AT_rich Low_complexity Low_complexity 42 56 0 301 364 42 12 chr6 24158953 24159118 -165120436 + MIR3 SINE MIR 10 179 -29 21 71 0 0 chr6 24159190 24159232 -165120322 + AT_rich Low_complexity Low_complexity 1 42 0 1210 274 48 60 chr6 24159407 24159910 -165119644 - LTR33 LTR ERVL -24 497 1 555 298 19 6 chr6 24160600 24160761 -165118793 - MIR SINE MIR -98 164 2 255 400 62 0 chr6 24160874 24161004 -165118550 + L2 LINE L2 3134 3271 -1 406 260 142 81 chr6 24161844 24162046 -165117508 + MLT1I LTR MaLR 142 363 -46 2496 81 0 0 chr6 24162046 24162354 -165117200 - AluSg SINE Alu -2 308 1 406 260 142 81 chr6 24162354 24162397 -165117157 + MLT1I LTR MaLR 363 402 -7 210 291 38 25 chr6 24162819 24162898 -165116656 + L2 LINE L2 3234 3313 0 28 79 0 0 chr6 24163259 24163322 -165116232 + AT_rich Low_complexity Low_complexity 1 63 0 191 214 0 0 chr6 24163384 24163426 -165116128 + L3b LINE CR1 1363 1404 -179 331 216 284 0 chr6 24163927 24164015 -165115539 - L2 LINE L2 -1 3312 3200 237 431 57 8 chr6 24164068 24164191 -165115363 + L2 LINE L2 3112 3240 -32 195 333 58 0 chr6 24164468 24164555 -165114999 + MIR SINE MIR 40 131 -77 513 286 12 12 chr6 24165251 24165412 -165114142 - MIR SINE MIR 0 262 102 27 81 0 0 chr6 24165481 24165543 -165114011 + AT_rich Low_complexity Low_complexity 1 62 0 325 248 114 9 chr6 24167733 24167838 -165111716 + MIR3 SINE MIR 86 201 -7 265 323 46 39 chr6 24168525 24168655 -165110899 + L2 LINE L2 3136 3266 -6 2273 66 0 21 chr6 24169025 24169343 -165110211 - AluY SINE Alu 0 312 1 1306 158 4 0 chr6 24169443 24169671 -165109883 - L1PA14 LINE L1 0 6161 5933 414 308 55 66 chr6 24171132 24171512 -165108042 + HAL1b LINE L1 52 427 -921 313 340 52 7 chr6 24171513 24171666 -165107888 + HAL1b LINE L1 451 610 -738 258 71 18 36 chr6 24171998 24172054 -165107500 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr6 24172485 24172514 -165107040 + AT_rich Low_complexity Low_complexity 1 29 0 225 224 31 31 chr6 24172633 24172731 -165106823 + L1MDa LINE L1 1299 1396 -5144 474 283 83 40 chr6 24172949 24173274 -165106280 + HAL1 LINE L1 1329 1667 -840 978 184 41 30 chr6 24173337 24173604 -165105950 - L1MA9 LINE L1 -771 5375 5106 * 3525 184 34 35 chr6 24173600 24174361 -165105193 + L1MA9 LINE L1 5347 6106 -206 21 36 0 0 chr6 24174481 24174509 -165105045 + AT_rich Low_complexity Low_complexity 1 28 0 811 231 121 5 chr6 24174513 24174712 -165104842 + MER58A DNA MER1_type 3 224 0 252 265 46 97 chr6 24174764 24174960 -165104594 + L1ME4a LINE L1 5922 6107 -14 2667 174 6 33 chr6 24176720 24177201 -165102353 + LOR1a LTR ERV1 1 469 -28 1484 77 87 0 chr6 24177201 24177409 -165102145 + MER30 DNA MER1_type 5 230 0 2667 174 6 33 chr6 24177409 24177438 -165102116 + LOR1a LTR ERV1 469 497 0 180 394 106 22 chr6 24177620 24177800 -165101754 + L2 LINE L2 3077 3271 -1 236 254 34 0 chr6 24178528 24178587 -165100967 - MIR SINE MIR -62 146 86 187 227 23 0 chr6 24180122 24180166 -165099388 + L2 LINE L2 2846 2890 -423 1545 143 91 7 chr6 24181016 24181302 -165098252 - L1MC1 LINE L1 -10 6323 6014 554 239 32 13 chr6 24181740 24181895 -165097659 - MER103 DNA DNA -2 164 7 1703 90 0 8 chr6 24181989 24182223 -165097331 + AluY SINE Alu 74 305 -6 23 54 0 0 chr6 24182346 24182383 -165097171 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 24182655 24182678 -165096876 + AT_rich Low_complexity Low_complexity 1 23 0 236 342 95 40 chr6 24182752 24182843 -165096711 + MIR SINE MIR 1 86 -176 1628 113 4 21 chr6 24182843 24183081 -165096473 - AluSq SINE Alu -79 234 1 236 342 95 40 chr6 24183081 24183211 -165096343 + MIR SINE MIR 86 234 -28 2269 147 76 27 chr6 24183962 24184371 -165095183 + Tigger2a DNA MER2_type 6 434 0 384 296 53 40 chr6 24184684 24184836 -165094718 - MER5B DNA MER1_type -24 154 1 569 175 21 0 chr6 24185300 24185397 -165094157 + MER81 DNA DNA 15 113 -1 2186 118 3 10 chr6 24186093 24186407 -165093147 - AluSx SINE Alu 0 312 1 2096 121 40 32 chr6 24188025 24188397 -165091157 - THE1C LTR MaLR 0 375 1 2185 101 7 7 chr6 24188806 24189104 -165090450 - AluSx SINE Alu -1 311 14 22 35 0 0 chr6 24191474 24191503 -165088051 + AT_rich Low_complexity Low_complexity 1 29 0 2110 84 3 21 chr6 24191505 24191789 -165087765 + AluY SINE Alu 21 299 -12 883 169 11 45 chr6 24191789 24191966 -165087588 + AluJb SINE Alu 134 304 -8 243 170 0 0 chr6 24192263 24192310 -165087244 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 490 101 13 13 chr6 24192392 24192471 -165087083 - MADE1 DNA Mariner 0 80 2 323 317 108 53 chr6 24192750 24193036 -165086518 + L1 LINE L1 3264 3584 -2562 1784 194 16 27 chr6 24193036 24193403 -165086151 - MLT1A1 LTR MaLR -2 363 1 323 317 108 53 chr6 24193403 24193551 -165086003 + L1 LINE L1 3584 3722 -2424 418 360 11 16 chr6 24193729 24193915 -165085639 + MER5A DNA MER1_type 4 188 -1 221 250 0 33 chr6 24194229 24194289 -165085265 - L2 LINE L2 0 3272 3215 260 294 31 60 chr6 24196071 24196267 -165083287 + MER20B DNA MER1_type 3 199 -20 198 0 0 0 chr6 24196318 24196340 -165083214 + (A)n Simple_repeat Simple_repeat 1 22 0 239 235 20 0 chr6 24196401 24196452 -165083102 + MLT1H1 LTR MaLR 1 52 -503 336 199 193 64 chr6 24196644 24196815 -165082739 + MLT1H1 LTR MaLR 327 519 -36 1206 160 5 0 chr6 24197060 24197254 -165082300 + MSTB LTR MaLR 1 195 -231 881 86 0 0 chr6 24197267 24197383 -165082171 + AluSg/x SINE Alu 177 292 -20 22 35 0 0 chr6 24197383 24197412 -165082142 + AT_rich Low_complexity Low_complexity 1 29 0 1206 169 42 17 chr6 24197416 24197653 -165081901 + MSTB LTR MaLR 184 426 0 22 0 0 0 chr6 24197694 24197716 -165081838 + AT_rich Low_complexity Low_complexity 1 22 0 300 271 98 57 chr6 24197737 24197859 -165081695 + L2 LINE L2 3180 3306 -7 2282 103 3 6 chr6 24197949 24198261 -165081293 + AluSp SINE Alu 1 311 -2 195 297 230 0 chr6 24198333 24198407 -165081147 - MIR3 SINE MIR -46 162 72 225 0 0 0 chr6 24198529 24198554 -165081000 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr6 24198554 24198588 -165080966 + (TA)n Simple_repeat Simple_repeat 2 35 0 275 0 29 0 chr6 24199339 24199374 -165080180 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 773 62 0 0 chr6 24199377 24199474 -165080080 - L1PA10 LINE L1 -32 6136 6040 322 252 139 0 chr6 24199568 24199683 -165079871 - MIR SINE MIR -6 256 126 25496 129 14 12 chr6 24199683 24206053 -165073501 + L1PA8A LINE L1 1 6441 -5 200 360 0 27 chr6 24206064 24206139 -165073415 - MIR SINE MIR -71 137 65 285 367 47 12 chr6 24206181 24206350 -165073204 - MIR SINE MIR -78 184 10 370 300 58 31 chr6 24206729 24206952 -165072602 - MLT1J2 LTR MaLR -221 229 1 184 314 21 64 chr6 24207275 24207415 -165072139 - L2 LINE L2 -1 3312 3179 22 0 0 0 chr6 24208856 24208878 -165070676 + AT_rich Low_complexity Low_complexity 1 22 0 462 167 49 0 chr6 24208878 24208980 -165070574 - L1MA8 LINE L1 -1 6290 6184 43 0 0 0 chr6 24209004 24209047 -165070507 + AT_rich Low_complexity Low_complexity 1 43 0 2058 114 8 40 chr6 24209047 24209424 -165070130 - L1MA8 LINE L1 -110 6181 5817 448 261 118 26 chr6 24209570 24209765 -165069789 - MIR SINE MIR -35 227 15 228 287 23 23 chr6 24209946 24210033 -165069521 + GA-rich Low_complexity Low_complexity 2 88 0 499 123 0 37 chr6 24210055 24210157 -165069397 - L1P5 LINE L1 -355 5801 5707 237 65 0 0 chr6 24210720 24210751 -165068803 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3029 125 28 10 chr6 24210751 24211256 -165068298 - LTR9B LTR ERV1 -89 555 42 15642 92 21 10 chr6 24211257 24211586 -165067968 - HUERS-P3b LTR ERV1 -1 7417 7093 11114 83 5 0 chr6 24211586 24213903 -165065651 + L1PA7 LINE L1 3828 6152 -2 15642 92 21 10 chr6 24213903 24216168 -165063386 - HUERS-P3b LTR ERV1 -325 7093 4719 11969 102 143 135 chr6 24216167 24219198 -165060356 - HUERS-P3b LTR ERV1 -3544 3874 747 * 764 121 79 7 chr6 24219206 24219346 -165060208 - HUERS-P3b LTR ERV1 -6859 559 410 381 175 52 62 chr6 24219350 24219447 -165060107 - HUERS-P3b LTR ERV1 -7322 96 1 1255 129 0 5 chr6 24219447 24219648 -165059906 - LTR9B LTR ERV1 0 644 445 2083 137 3 0 chr6 24220042 24220335 -165059219 - AluSq SINE Alu -17 296 3 298 317 48 35 chr6 24220371 24220516 -165059038 - L2 LINE L2 -185 3087 2941 182 393 34 0 chr6 24220607 24220696 -165058858 - L2 LINE L2 -508 2806 2715 232 374 96 0 chr6 24220883 24221070 -165058484 - L2 LINE L2 -824 2490 2286 403 160 9 66 chr6 24221356 24221462 -165058092 + MER58 DNA MER1_type 2306 2405 -15 1436 179 164 3 chr6 24223991 24224332 -165055222 + MSTD LTR MaLR 1 396 0 2038 85 19 11 chr6 24224940 24225211 -165054343 + AluSg1 SINE Alu 21 293 -16 336 48 0 0 chr6 24225231 24225273 -165054281 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr6 24227880 24227901 -165051653 + AT_rich Low_complexity Low_complexity 1 21 0 459 262 48 83 chr6 24228188 24228501 -165051053 + MLT1H LTR MaLR 219 520 -29 330 273 87 81 chr6 24228693 24229027 -165050527 - L1ME3A LINE L1 -284 5886 5551 391 318 45 25 chr6 24229036 24229237 -165050317 - MLT1J1 LTR MaLR -180 266 62 546 265 6 41 chr6 24229361 24229531 -165050023 - MIR SINE MIR -70 192 29 386 354 94 9 chr6 24229693 24230012 -165049542 + L2 LINE L2 1786 2131 -1183 27 0 0 0 chr6 24230066 24230093 -165049461 + AT_rich Low_complexity Low_complexity 1 27 0 480 250 47 20 chr6 24230423 24230571 -165048983 + L2 LINE L2 2931 3082 -190 273 306 326 20 chr6 24230895 24231091 -165048463 - L3 LINE CR1 -727 850 595 290 276 98 32 chr6 24231492 24231615 -165047939 - MIR SINE MIR -34 228 98 221 333 50 10 chr6 24232335 24232434 -165047120 - MIR SINE MIR -122 140 38 346 321 80 31 chr6 24232764 24232988 -165046566 + MIR SINE MIR 28 262 0 7293 111 95 96 chr6 24233110 24234807 -165044747 + pTR5 LTR ERV1 743 2438 0 1780 179 48 59 chr6 24235017 24235343 -165044211 - MLT2C2 LTR ERVL -11 453 132 1691 179 0 60 chr6 24235343 24235662 -165043892 - AluJb SINE Alu -12 300 1 1780 179 48 59 chr6 24235662 24235793 -165043761 - MLT2C2 LTR ERVL -332 132 1 2019 250 44 18 chr6 24236353 24236909 -165042645 - MER77 LTR ERV1 -4 601 54 520 290 94 27 chr6 24237020 24237244 -165042310 - MIR SINE MIR -10 252 14 1099 267 99 28 chr6 24237296 24237760 -165041794 - Charlie2 DNA MER1_type -2251 531 35 210 37 0 0 chr6 24238247 24238274 -165041280 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1900 111 15 0 chr6 24238275 24238536 -165041018 - AluSx SINE Alu -47 265 1 23 0 0 0 chr6 24238876 24238899 -165040655 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 24239676 24239698 -165039856 + AT_rich Low_complexity Low_complexity 1 22 0 2396 101 0 0 chr6 24241096 24241404 -165038150 - AluSq SINE Alu -5 308 1 250 282 0 13 chr6 24242635 24242713 -165036841 + CT-rich Low_complexity Low_complexity 1 77 0 318 276 0 32 chr6 24243589 24243712 -165035842 + MER115 DNA AcHobo 111 229 -464 274 310 129 23 chr6 24243909 24244080 -165035474 + L2 LINE L2 2897 3085 -187 389 248 302 0 chr6 24244857 24245006 -165034548 - MIR SINE MIR -30 232 39 361 248 283 0 chr6 24245623 24245768 -165033786 + MER5A DNA MER1_type 4 189 0 4353 193 72 1 chr6 24246294 24247301 -165032253 + Tigger6a DNA MER2_type 2 1079 -4 504 96 21 11 chr6 24247303 24247387 -165032167 + (TAGA)n Simple_repeat Simple_repeat 1 88 -7 3643 102 0 2 chr6 24247387 24247905 -165031649 + L1PA13 LINE L1 5640 6156 -7 504 96 21 11 chr6 24247905 24247914 -165031640 + (TAGA)n Simple_repeat Simple_repeat 88 95 0 27 73 0 0 chr6 24248381 24248436 -165031118 + AT_rich Low_complexity Low_complexity 1 55 0 300 264 182 0 chr6 24248889 24248999 -165030555 + MLT1J2 LTR MaLR 200 329 -121 476 173 233 40 chr6 24249152 24249302 -165030252 + MER3 DNA MER1_type 6 184 -25 1384 118 45 9 chr6 24249625 24249845 -165029709 + MER30 DNA MER1_type 1 228 -2 2251 71 0 0 chr6 24250452 24250788 -165028766 - AluY SINE Alu 0 336 1 1534 234 0 7 chr6 24253116 24253420 -165026134 + AluJo SINE Alu 2 303 -9 2070 113 20 13 chr6 24253773 24254073 -165025481 - AluSx SINE Alu -10 302 1 248 336 86 31 chr6 24254466 24254594 -165024960 + MIR3 SINE MIR 12 146 -62 296 255 10 20 chr6 24254841 24254943 -165024611 + MER103 DNA DNA 12 112 -54 23 0 0 0 chr6 24255216 24255239 -165024315 + AT_rich Low_complexity Low_complexity 1 23 0 2103 126 34 0 chr6 24258213 24258506 -165021048 + AluSx SINE Alu 1 303 -9 1352 134 40 27 chr6 24258634 24258858 -165020696 + AluJb SINE Alu 86 312 0 254 344 21 11 chr6 24259109 24259202 -165020352 + MIR SINE MIR 38 131 -131 2052 99 16 43 chr6 24259211 24259344 -165020210 + AluSg SINE Alu 2 137 -173 2300 81 0 3 chr6 24259344 24259640 -165019914 + AluY SINE Alu 1 295 -16 2052 99 16 43 chr6 24259640 24259809 -165019745 + AluSg SINE Alu 137 296 -14 413 354 74 41 chr6 24259811 24260597 -165018957 - L2 LINE L2 -1 3271 2463 2078 105 25 4 chr6 24260634 24260943 -165018611 + AluSx SINE Alu 1 315 0 213 108 0 0 chr6 24262398 24262435 -165017119 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1991 116 4 0 chr6 24262439 24262714 -165016840 - AluSg SINE Alu -34 276 1 509 274 14 56 chr6 24262895 24263110 -165016444 + LTR33 LTR ERVL 7 212 -309 235 222 30 121 chr6 24263329 24263428 -165016126 - MIR SINE MIR -66 142 53 458 275 48 53 chr6 24263438 24263645 -165015909 - MLT1K LTR MaLR -22 566 361 1560 204 106 10 chr6 24264716 24265133 -165014421 + MER101 LTR ERV1 6 462 -12 22 0 0 0 chr6 24265288 24265310 -165014244 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 24266654 24266677 -165012877 + AT_rich Low_complexity Low_complexity 1 23 0 181 355 51 29 chr6 24269013 24269151 -165010403 + L3b LINE CR1 1356 1496 -87 180 0 0 0 chr6 24269234 24269254 -165010300 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 213 196 0 0 chr6 24269697 24269748 -165009806 + (TATG)n Simple_repeat Simple_repeat 2 52 0 188 67 33 0 chr6 24270291 24270321 -165009233 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1261 191 89 18 chr6 24270454 24270613 -165008941 - AluJo SINE Alu -10 302 156 234 0 0 0 chr6 24270613 24270639 -165008915 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1261 191 89 18 chr6 24270639 24270761 -165008793 - AluJo SINE Alu -156 156 1 3686 163 319 64 chr6 24271122 24272475 -165007079 + pTR5 LTR ERV1 741 2438 0 2266 107 3 0 chr6 24273472 24273770 -165005784 + AluSx SINE Alu 1 299 -13 1689 165 65 108 chr6 24274640 24275083 -165004471 + MSTA LTR MaLR 1 424 -4 9096 160 8 18 chr6 24275085 24275322 -165004232 + MSTA-int LTR MaLR 1 239 -1132 2328 94 0 22 chr6 24275322 24275640 -165003914 + AluY SINE Alu 1 311 0 9096 160 8 18 chr6 24275640 24277068 -165002486 + MSTA-int LTR MaLR 239 1370 -1 1797 194 71 22 chr6 24277069 24277477 -165002077 + MSTA LTR MaLR 1 428 0 2189 136 14 27 chr6 24277547 24277916 -165001638 + THE1B LTR MaLR 1 364 0 360 184 11 49 chr6 24278092 24278277 -165001277 + GA-rich Low_complexity Low_complexity 2 179 0 1354 284 99 42 chr6 24278330 24278638 -165000916 + L1ME LINE L1 97 386 -5875 324 0 0 0 chr6 24278638 24278674 -165000880 + (TG)n Simple_repeat Simple_repeat 2 37 0 1354 284 99 42 chr6 24278674 24279643 -164999911 + L1ME LINE L1 386 1299 -4962 2380 63 11 0 chr6 24279643 24279928 -164999626 + AluY SINE Alu 1 288 -23 1354 284 99 42 chr6 24279928 24280172 -164999382 + L1ME LINE L1 1299 1528 -4733 474 18 0 0 chr6 24280172 24280227 -164999327 + (TA)n Simple_repeat Simple_repeat 2 56 0 1354 284 99 42 chr6 24280227 24280386 -164999168 + L1ME LINE L1 1528 1942 -4319 277 259 0 116 chr6 24281459 24281571 -164997983 + MER58 DNA MER1_type 1 99 -2321 472 192 0 19 chr6 24281585 24281689 -164997865 + MER58 DNA MER1_type 2319 2420 0 2234 71 3 0 chr6 24281777 24282059 -164997495 + AluY SINE Alu 25 307 -4 2050 125 7 3 chr6 24282168 24282464 -164997090 + AluSg SINE Alu 1 297 -13 718 286 160 3 chr6 24282541 24282866 -164996688 + MLT1G1 LTR MaLR 6 381 -214 244 164 0 49 chr6 24282926 24282987 -164996567 + MLT1G1 LTR MaLR 474 531 -24 21 0 0 0 chr6 24283727 24283748 -164995806 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 24284048 24284084 -164995470 + AT_rich Low_complexity Low_complexity 1 36 0 225 341 87 35 chr6 24286199 24286428 -164993126 - L2 LINE L2 -905 2409 2169 932 222 15 0 chr6 24286865 24287063 -164992491 - MER20 DNA MER1_type -3 216 16 242 196 0 0 chr6 24287098 24287144 -164992410 + MER39 LTR ERV1 1 46 -661 1393 190 97 33 chr6 24287175 24287596 -164991958 + MER39 LTR ERV1 260 707 0 28 0 0 0 chr6 24288755 24288783 -164990771 + AT_rich Low_complexity Low_complexity 1 28 0 823 195 71 122 chr6 24289452 24289847 -164989707 - MER57A LTR ERV1 0 403 29 2288 98 0 0 chr6 24290224 24290521 -164989033 - AluSg SINE Alu -13 297 1 396 175 0 12 chr6 24292206 24292286 -164987268 - MADE1 DNA Mariner 0 80 2 300 255 78 20 chr6 24292301 24292403 -164987151 + MIR SINE MIR 100 207 -55 1012 187 22 49 chr6 24293289 24293514 -164986040 + MER20 DNA MER1_type 1 219 0 350 326 16 43 chr6 24294725 24294909 -164984645 + MIR SINE MIR 53 231 -31 30 59 0 0 chr6 24295878 24295929 -164983625 + AT_rich Low_complexity Low_complexity 1 51 0 384 77 0 0 chr6 24296253 24296305 -164983249 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1199 94 0 6 chr6 24296317 24296498 -164983056 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 228 182 0 0 chr6 24298394 24298438 -164981116 + GA-rich Low_complexity Low_complexity 2 45 0 612 195 0 8 chr6 24298468 24298591 -164980963 + MER46A DNA MER2_type 25 146 -90 609 291 94 10 chr6 24298594 24298797 -164980757 - MIR SINE MIR -41 221 2 609 170 0 0 chr6 24301108 24301220 -164978334 + (CA)n Simple_repeat Simple_repeat 2 113 0 1766 162 10 3 chr6 24301535 24301825 -164977729 - AluSx SINE Alu -20 292 1 211 290 0 29 chr6 24304343 24304412 -164975142 + GA-rich Low_complexity Low_complexity 3 69 0 2240 109 0 7 chr6 24305738 24306042 -164973512 - AluSx SINE Alu -10 302 1 2322 88 3 0 chr6 24306627 24306922 -164972632 + AluSp SINE Alu 1 296 -17 477 243 37 70 chr6 24308171 24308385 -164971169 - L2 LINE L2 -6 3307 3101 30 0 0 0 chr6 24308789 24308819 -164970735 + AT_rich Low_complexity Low_complexity 1 30 0 838 281 129 13 chr6 24309559 24309876 -164969678 + L1MDb LINE L1 7 360 -6049 228 277 80 9 chr6 24309880 24309992 -164969562 + L1MDb LINE L1 416 535 -5874 4192 219 78 30 chr6 24310099 24310799 -164968755 + L1MDb LINE L1 402 1067 -5339 2857 103 41 9 chr6 24310799 24311236 -164968318 + L1PA10 LINE L1 5718 6168 0 4192 219 78 30 chr6 24311236 24313143 -164966411 + L1MDb LINE L1 1067 3143 -3263 1163 85 0 20 chr6 24313143 24313296 -164966258 + AluSx SINE Alu 11 160 -152 525 264 58 16 chr6 24313330 24313588 -164965966 + L1MDb LINE L1 3140 3408 -2998 * 5633 148 30 39 chr6 24313555 24313643 -164965911 + L1PA16 LINE L1 4922 5009 -1417 1802 132 87 13 chr6 24313643 24313953 -164965601 - MER1B DNA MER1_type -4 333 1 5633 148 30 39 chr6 24313953 24315394 -164964160 + L1PA16 LINE L1 5009 6426 0 1773 262 24 25 chr6 24315375 24315838 -164963716 + L1MDb LINE L1 3366 3829 -2577 * 1946 146 7 10 chr6 24315838 24316146 -164963408 - AluSx SINE Alu -5 307 1 1773 262 24 25 chr6 24316146 24316351 -164963203 + L1MDb LINE L1 3829 4033 -2373 2339 89 3 0 chr6 24316582 24316884 -164962670 - AluSx SINE Alu -9 303 1 224 245 0 29 chr6 24316978 24317080 -164962474 + (TA)n Simple_repeat Simple_repeat 1 99 0 22 35 0 0 chr6 24317080 24317109 -164962445 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 24319357 24319394 -164960160 + AT_rich Low_complexity Low_complexity 1 37 0 243 374 145 9 chr6 24319866 24320184 -164959370 - L2 LINE L2 -1032 2282 1922 5409 27 0 0 chr6 24320316 24320944 -164958610 + L1PA3 LINE L1 5525 6152 -3 2065 141 3 0 chr6 24321186 24321483 -164958071 + AluSx SINE Alu 1 298 -14 21 89 0 0 chr6 24321621 24321677 -164957877 + AT_rich Low_complexity Low_complexity 1 56 0 207 213 0 21 chr6 24322535 24322582 -164956972 + A-rich Low_complexity Low_complexity 4 49 0 246 315 134 0 chr6 24323101 24323228 -164956326 + L3b LINE CR1 1242 1385 -198 689 233 66 60 chr6 24323295 24323449 -164956105 - MER69 DNA AcHobo -168 2358 2206 1937 135 3 14 chr6 24323449 24323745 -164955809 + AluJb SINE Alu 1 293 -19 689 233 66 60 chr6 24323745 24323937 -164955617 - MER69 DNA AcHobo -320 2206 2010 * 783 279 85 31 chr6 24323935 24324229 -164955325 - MER69 DNA AcHobo -658 568 259 668 159 65 7 chr6 24324251 24324389 -164955165 + L1MA10 LINE L1 6174 6319 -15 291 295 83 25 chr6 24324405 24324659 -164954895 - LTR41 LTR ERVL 0 795 506 1357 238 40 62 chr6 24324994 24325590 -164953964 + L1MDb LINE L1 4345 4927 -1479 954 247 67 43 chr6 24325783 24326159 -164953395 + L1MDb LINE L1 4857 5241 -1165 590 202 39 39 chr6 24326147 24326325 -164953229 + L1MA10 LINE L1 6155 6332 -2 * 398 254 52 104 chr6 24326754 24326927 -164952627 - MIR3 SINE MIR -4 204 41 21 0 0 0 chr6 24327411 24327432 -164952122 + AT_rich Low_complexity Low_complexity 1 21 0 668 254 90 59 chr6 24327432 24327909 -164951645 - L1ME4a LINE L1 0 6121 5630 335 237 138 26 chr6 24328871 24329034 -164950520 + MIR SINE MIR 3 198 -62 22 0 0 0 chr6 24329133 24329155 -164950399 + AT_rich Low_complexity Low_complexity 1 22 0 2211 100 0 7 chr6 24329322 24329621 -164949933 - AluSq SINE Alu -16 297 1 397 244 211 8 chr6 24329737 24329860 -164949694 - MER5A DNA MER1_type -27 162 15 1147 126 43 91 chr6 24329872 24330102 -164949452 + MER20 DNA MER1_type 1 219 0 189 140 35 53 chr6 24334229 24334286 -164945268 - MER5C DNA MER1_type -106 218 163 329 270 40 30 chr6 24334486 24334586 -164944968 - L2 LINE L2 0 3272 3172 194 349 0 0 chr6 24334778 24334844 -164944710 + MIR SINE MIR 82 147 -115 309 300 56 32 chr6 24334860 24335202 -164944352 + L2 LINE L2 1272 1709 -1605 593 216 0 0 chr6 24335262 24335387 -164944167 - MER3 DNA MER1_type 0 209 85 31 26 0 0 chr6 24336550 24336588 -164942966 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 71 chr6 24336827 24336869 -164942685 + AT_rich Low_complexity Low_complexity 1 39 0 3300 150 42 85 chr6 24336869 24337099 -164942455 + L1MB3 LINE L1 5445 5683 -500 1767 53 80 0 chr6 24337099 24337324 -164942230 + AluY SINE Alu 41 283 -28 3300 150 42 85 chr6 24337324 24337858 -164941696 + L1MB3 LINE L1 5683 6176 -7 294 247 21 10 chr6 24337858 24337955 -164941599 + (TA)n Simple_repeat Simple_repeat 1 98 0 580 301 55 47 chr6 24337963 24338199 -164941355 - MIR SINE MIR -20 242 5 5923 147 9 53 chr6 24338421 24340262 -164939292 - L1PB1 LINE L1 -1 6150 4396 2744 90 3 8 chr6 24440545 24440932 -164838622 + L1PA13 LINE L1 5777 6161 -2 1294 212 60 92 chr6 24441029 24441070 -164838484 - LTR54B LTR ERV1 -3 495 454 1493 88 5 0 chr6 24441070 24441285 -164838269 - L1PA7 LINE L1 -6 6148 5933 1294 212 60 92 chr6 24441285 24441329 -164838225 - LTR54B LTR ERV1 -44 454 410 2575 43 0 0 chr6 24441329 24441630 -164837924 + AluY SINE Alu 1 301 -10 1294 212 60 92 chr6 24441630 24442044 -164837510 - LTR54B LTR ERV1 -88 410 11 848 191 29 34 chr6 24442614 24442823 -164836731 + MER3 DNA MER1_type 1 208 -1 204 327 0 89 chr6 24442976 24443008 -164836546 + L2 LINE L2 3146 3179 -93 2448 50 0 0 chr6 24443008 24443311 -164836243 + L1PA8 LINE L1 5870 6172 0 204 327 0 89 chr6 24443311 24443379 -164836175 + L2 LINE L2 3179 3237 -35 226 224 13 105 chr6 24443419 24443495 -164836059 - MIR3 SINE MIR -1 207 139 676 283 97 72 chr6 24443561 24444003 -164835551 + MLT1L LTR MaLR 110 562 -53 1261 271 162 9 chr6 24444032 24444463 -164835091 - MLT1E LTR MaLR -96 497 1 181 344 67 0 chr6 24444463 24444553 -164835001 - MIR SINE MIR -58 150 55 340 353 27 0 chr6 24444587 24444774 -164834780 + MIR SINE MIR 70 261 -1 419 211 9 44 chr6 24445649 24445763 -164833791 - MIR SINE MIR 0 262 153 23 54 0 0 chr6 24446087 24446124 -164833430 + AT_rich Low_complexity Low_complexity 1 37 0 2035 143 0 7 chr6 24446308 24446609 -164832945 - AluSx SINE Alu -13 299 1 10320 201 49 54 chr6 24447831 24453392 -164826162 + L1MC1 LINE L1 46 5576 -1037 1283 212 24 28 chr6 24453392 24453680 -164825874 + AluJo SINE Alu 3 289 -23 10320 201 49 54 chr6 24453680 24454708 -164824846 + L1MC1 LINE L1 5576 6607 -6 217 147 80 0 chr6 24455419 24455494 -164824060 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr6 24455886 24455921 -164823633 + AT_rich Low_complexity Low_complexity 1 35 0 215 351 88 18 chr6 24456948 24457062 -164822492 - L2 LINE L2 -33 3239 3118 815 333 102 34 chr6 24458751 24459283 -164820271 - L2 LINE L2 -448 2866 2299 254 217 42 25 chr6 24459737 24459857 -164819697 + (TA)n Simple_repeat Simple_repeat 2 123 0 1891 179 14 19 chr6 24460338 24460701 -164818853 + MLT1A1 LTR MaLR 5 365 0 280 331 112 6 chr6 24461878 24462047 -164817507 - MIR SINE MIR -56 206 20 207 188 0 0 chr6 24462446 24462494 -164817060 + (TG)n Simple_repeat Simple_repeat 2 49 0 247 261 144 0 chr6 24462888 24462999 -164816555 - L1MC/D LINE L1 -1923 5885 5759 2080 124 0 0 chr6 24463101 24463392 -164816162 + AluSc SINE Alu 1 291 -18 363 44 0 0 chr6 24463392 24463437 -164816117 + (TA)n Simple_repeat Simple_repeat 2 46 0 236 290 36 43 chr6 24463671 24463809 -164815745 - L1MC/D LINE L1 -673 5448 5312 2414 87 0 0 chr6 24463943 24464254 -164815300 + AluY SINE Alu 1 311 0 350 291 26 93 chr6 24464570 24464721 -164814833 - MIR3 SINE MIR -9 199 59 27 0 0 0 chr6 24466045 24466072 -164813482 + AT_rich Low_complexity Low_complexity 1 27 0 253 0 0 51 chr6 24467580 24467619 -164811935 + (CATA)n Simple_repeat Simple_repeat 4 40 0 756 306 101 8 chr6 24469588 24469836 -164809718 - HERV16 LTR ERVL -1901 3095 2825 667 246 7 7 chr6 24470185 24470323 -164809231 - L2 LINE L2 0 3313 3176 272 27 27 0 chr6 24470328 24470365 -164809189 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1302 310 44 45 chr6 24470393 24470979 -164808575 - L2 LINE L2 -310 3003 2421 2049 267 116 45 chr6 24470989 24471885 -164807669 - L2 LINE L2 -2328 986 27 195 259 19 0 chr6 24472607 24472661 -164806893 + L2 LINE L2 3256 3310 -3 236 273 0 15 chr6 24472726 24472792 -164806762 - L2 LINE L2 -1 3312 3248 1053 200 192 90 chr6 24472987 24473150 -164806404 - MLT1D LTR MaLR 0 505 360 1955 115 7 4 chr6 24473150 24473420 -164806134 + AluSc SINE Alu 24 294 -15 1053 200 192 90 chr6 24473420 24473710 -164805844 - MLT1D LTR MaLR -145 360 6 259 133 17 17 chr6 24476679 24476739 -164802815 + (TA)n Simple_repeat Simple_repeat 1 60 0 395 293 61 7 chr6 24477160 24477307 -164802247 + MIR SINE MIR 100 254 -8 21 0 0 0 chr6 24478078 24478099 -164801455 + AT_rich Low_complexity Low_complexity 1 21 0 2347 84 3 0 chr6 24479074 24479373 -164800181 - AluSx SINE Alu -12 300 1 183 333 10 21 chr6 24479452 24479548 -164800006 + L2 LINE L2 2288 2382 -932 189 342 45 58 chr6 24479691 24479846 -164799708 + L2 LINE L2 2568 2720 -594 187 337 68 44 chr6 24480011 24480216 -164799338 + L2 LINE L2 2933 3142 -130 492 270 16 0 chr6 24480588 24480714 -164798840 - MER94 DNA DNA -3 131 4 280 249 3 31 chr6 24483224 24483346 -164796208 + L1ME3 LINE L1 5271 5389 -781 428 329 124 9 chr6 24483350 24483672 -164795882 + L1ME3 LINE L1 5561 5919 -243 1131 157 0 0 chr6 24483772 24483950 -164795604 - AluSg/x SINE Alu -2 310 133 1979 91 76 0 chr6 24484760 24485036 -164794518 - AluSq SINE Alu -16 297 1 358 247 54 11 chr6 24485773 24485866 -164793688 - L2 LINE L2 -16 3297 3201 202 375 109 11 chr6 24486021 24486288 -164793266 - L2 LINE L2 -1862 1452 1160 370 351 18 0 chr6 24487322 24487433 -164792121 + MIR3 SINE MIR 72 184 -24 417 188 9 18 chr6 24488605 24488717 -164790837 + GA-rich Low_complexity Low_complexity 1 111 0 2255 102 0 0 chr6 24489854 24490149 -164789405 + AluSc SINE Alu 1 295 -14 377 336 102 8 chr6 24490449 24490693 -164788861 + MLT1J LTR MaLR 52 318 -193 8196 64 13 3 chr6 24491625 24492685 -164786869 + MER11C LTR ERVK 1 1071 0 291 172 52 17 chr6 24492711 24492769 -164786785 - LTR40a LTR ERVL -1 518 459 317 141 14 0 chr6 24492774 24492845 -164786709 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 286 191 75 21 chr6 24492868 24492962 -164786592 - LTR40b LTR ERVL -98 364 266 244 219 0 85 chr6 24493255 24493337 -164786217 - LTR40a LTR ERVL -444 75 1 437 341 29 29 chr6 24493374 24493547 -164786007 - MIR SINE MIR -77 185 13 208 289 117 16 chr6 24493622 24493750 -164785804 + L2 LINE L2 3172 3312 -1 22 35 0 0 chr6 24497240 24497269 -164782285 + AT_rich Low_complexity Low_complexity 1 29 0 686 204 14 0 chr6 24497459 24497606 -164781948 - L1MB1 LINE L1 -3 6165 6017 336 24 0 0 chr6 24497787 24497828 -164781726 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 24498577 24498602 -164780952 + AT_rich Low_complexity Low_complexity 1 25 0 663 279 10 32 chr6 24499640 24499865 -164779689 - MIR SINE MIR 0 262 47 330 176 44 11 chr6 24500861 24500952 -164778602 - L1MEc LINE L1 -4082 2314 2221 * 2302 251 156 10 chr6 24500948 24501919 -164777635 + L1M4 LINE L1 3707 4818 -1328 312 255 0 21 chr6 24502013 24502107 -164777447 + L1MC4 LINE L1 6612 6703 -1339 339 243 43 0 chr6 24502136 24502206 -164777348 - Tigger3(Golem) DNA MER2_type -1 3028 2956 2481 57 0 0 chr6 24502394 24502690 -164776864 - AluY SINE Alu -15 296 1 894 180 22 61 chr6 24502780 24503008 -164776546 + MER20 DNA MER1_type 1 219 0 2121 185 4 65 chr6 24503115 24503574 -164775980 + MSTB1 LTR MaLR 1 431 -1 23 0 0 0 chr6 24503807 24503830 -164775724 + AT_rich Low_complexity Low_complexity 1 23 0 2435 77 3 0 chr6 24505622 24505922 -164773632 + AluSx SINE Alu 1 301 -11 753 251 158 35 chr6 24506565 24506964 -164772590 + MLT1J2 LTR MaLR 1 448 -2 258 154 0 0 chr6 24507205 24507291 -164772263 - AluSc SINE Alu 0 332 247 1188 148 0 0 chr6 24507291 24507467 -164772087 - AluSx SINE Alu -136 176 1 384 268 0 0 chr6 24507735 24507817 -164771737 - L2 LINE L2 -6 3307 3226 22 0 0 0 chr6 24508851 24508873 -164770681 + AT_rich Low_complexity Low_complexity 1 22 0 995 152 7 0 chr6 24510179 24510346 -164769208 + FRAM SINE Alu 1 168 0 673 330 122 16 chr6 24510410 24510780 -164768774 - LTR33 LTR ERVL -11 510 102 299 276 35 0 chr6 24511317 24511404 -164768150 - MIR SINE MIR -92 170 81 407 240 240 27 chr6 24511627 24511852 -164767702 + L2 LINE L2 3041 3313 0 1944 149 0 7 chr6 24513606 24513902 -164765652 - AluSx SINE Alu -17 295 2 2196 76 13 48 chr6 24514994 24515309 -164764245 + AluSc SINE Alu 1 304 -5 736 248 60 54 chr6 24515909 24516442 -164763112 + L1M4 LINE L1 2883 3418 -2728 23 33 0 0 chr6 24516479 24516509 -164763045 + AT_rich Low_complexity Low_complexity 1 30 0 328 152 38 0 chr6 24516699 24516778 -164762776 + L1M4 LINE L1 3886 3967 -2179 21 0 0 0 chr6 24516873 24516894 -164762660 + AT_rich Low_complexity Low_complexity 1 21 0 266 300 71 0 chr6 24516970 24517110 -164762444 + L1M4 LINE L1 4455 4604 -1542 * 317 190 10 50 chr6 24517103 24517203 -164762351 - L1ME1 LINE L1 -232 5934 5839 * 347 147 20 108 chr6 24517185 24517287 -164762267 - L1MEc LINE L1 -6269 127 35 22 0 0 0 chr6 24517358 24517380 -164762174 + AT_rich Low_complexity Low_complexity 1 22 0 248 325 52 26 chr6 24518109 24518186 -164761368 + L2 LINE L2 3112 3190 -82 1125 290 95 33 chr6 24520484 24521064 -164758490 + L2 LINE L2 2704 3313 0 196 286 52 39 chr6 24521137 24521214 -164758340 - MIR SINE MIR -8 254 177 538 206 10 0 chr6 24521219 24521316 -164758238 - MER2 DNA MER2_type -247 98 1 369 306 75 7 chr6 24521337 24521484 -164758070 - MIR SINE MIR -95 167 11 1386 180 3 73 chr6 24522187 24522487 -164757067 + AluJo SINE Alu 4 282 -30 7558 30 0 0 chr6 24522507 24523546 -164756008 - L1PA4 LINE L1 -8 6147 5109 2882 32 0 0 chr6 24523546 24523891 -164755663 + L1PA4 LINE L1 4753 5097 -1049 489 286 71 71 chr6 24524071 24524480 -164755074 + HAL1 LINE L1 43 451 -2056 202 230 324 0 chr6 24525571 24525645 -164753909 + L2 LINE L2 3197 3294 -19 1406 219 40 23 chr6 24527329 24527676 -164751878 + MLT1A1 LTR MaLR 1 353 -12 21 0 0 0 chr6 24527780 24527801 -164751753 + AT_rich Low_complexity Low_complexity 1 21 0 479 283 24 6 chr6 24528883 24529111 -164750443 + L1MDa LINE L1 1718 2047 -854 2140 129 3 0 chr6 24529136 24529438 -164750116 - AluSx SINE Alu -9 303 1 48 72 0 0 chr6 24529508 24529605 -164749949 + AT_rich Low_complexity Low_complexity 1 97 0 342 267 59 34 chr6 24530019 24530255 -164749299 + L1MDa LINE L1 2689 2930 -3610 23 54 0 0 chr6 24532383 24532420 -164747134 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr6 24533788 24533825 -164745729 + AT_rich Low_complexity Low_complexity 1 37 0 258 167 0 0 chr6 24538210 24538270 -164741284 + (CGG)n Simple_repeat Simple_repeat 2 61 0 198 0 0 0 chr6 24538744 24538766 -164740788 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 278 346 109 6 chr6 24540545 24540701 -164738853 - MIR SINE MIR -71 191 20 634 316 56 16 chr6 24540788 24541038 -164738516 - MIR SINE MIR -1 261 2 352 212 24 0 chr6 24541539 24541624 -164737930 + L1PB4 LINE L1 6069 6155 -1 193 305 128 48 chr6 24543775 24543962 -164735592 + L2 LINE L2 3112 3313 0 286 367 166 20 chr6 24544323 24544522 -164735032 + MIR SINE MIR 29 256 -6 486 0 0 0 chr6 24544648 24544702 -164734852 + (TA)n Simple_repeat Simple_repeat 2 55 0 273 300 64 0 chr6 24545800 24545910 -164733644 - L2 LINE L2 -62 3251 3135 598 297 36 56 chr6 24546187 24546436 -164733118 - L2 LINE L2 -19 3294 3051 210 37 0 0 chr6 24552595 24552622 -164726932 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 56 0 0 chr6 24552846 24552882 -164726672 + AT_rich Low_complexity Low_complexity 1 36 0 249 340 53 101 chr6 24554056 24554432 -164725122 - L2 LINE L2 -1 3271 2914 1964 251 89 50 chr6 24554609 24555553 -164724001 + Zaphod DNA AcHobo 9 989 -3042 872 264 45 14 chr6 24555663 24555951 -164723603 + Zaphod DNA AcHobo 3735 4031 0 443 253 12 124 chr6 24557637 24557886 -164721668 + MIR SINE MIR 42 262 0 2361 118 25 3 chr6 24559478 24559834 -164719720 - THE1B LTR MaLR 0 364 1 1424 220 67 9 chr6 24560855 24561291 -164718263 + Charlie4a DNA MER1_type 47 507 -1 403 269 70 41 chr6 24562068 24562203 -164717351 + MIR SINE MIR 14 156 -106 414 39 0 0 chr6 24562203 24562255 -164717299 + (CAT)n Simple_repeat Simple_repeat 3 54 0 403 269 70 41 chr6 24562255 24562290 -164717264 + MIR SINE MIR 156 189 -73 741 289 121 46 chr6 24562834 24563288 -164716266 + L2 LINE L2 2373 2860 -454 352 333 9 9 chr6 24563597 24563705 -164715849 + L2 LINE L2 3163 3270 -2 214 355 145 15 chr6 24563706 24563906 -164715648 + L2 LINE L2 2225 2450 -864 274 273 0 26 chr6 24564330 24564407 -164715147 - MER5A DNA MER1_type -83 106 32 462 320 87 7 chr6 24564435 24564585 -164714969 + L2 LINE L2 3103 3264 -8 237 65 0 0 chr6 24565047 24565078 -164714476 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 263 0 0 chr6 24566255 24566312 -164713242 + GA-rich Low_complexity Low_complexity 4 60 0 25 31 0 0 chr6 24567399 24567431 -164712123 + AT_rich Low_complexity Low_complexity 1 32 0 340 177 127 0 chr6 24567864 24567943 -164711611 - LTR33 LTR ERVL -18 503 415 * 491 290 87 22 chr6 24567938 24568121 -164711433 - LTR33 LTR ERVL -212 309 115 291 28 0 0 chr6 24568197 24568233 -164711321 + (CA)n Simple_repeat Simple_repeat 1 36 0 1788 178 0 7 chr6 24568894 24569186 -164710368 + AluJo SINE Alu 1 290 -22 2488 129 3 0 chr6 24569489 24569852 -164709702 + THE1B LTR MaLR 1 364 0 603 315 103 28 chr6 24570141 24570659 -164708895 + L2 LINE L2 2686 3228 -85 258 32 0 0 chr6 24570701 24570732 -164708822 + (CA)n Simple_repeat Simple_repeat 1 31 0 1499 75 5 0 chr6 24570893 24571122 -164708432 + AluY SINE Alu 97 326 0 1841 146 22 41 chr6 24571763 24572078 -164707476 - AluJo SINE Alu -3 309 1 1169 246 97 68 chr6 24572079 24572655 -164706899 - L1ME3A LINE L1 -213 5957 5365 360 364 0 7 chr6 24572678 24572818 -164706736 - MER91B DNA MER1_type -28 162 24 357 43 0 0 chr6 24573229 24573276 -164706278 + (CA)n Simple_repeat Simple_repeat 2 48 0 584 126 10 0 chr6 24575411 24575514 -164704040 + L1MA8 LINE L1 6185 6288 -3 425 316 86 6 chr6 24575531 24575705 -164703849 + MLT1J LTR MaLR 3 190 -321 1561 148 71 53 chr6 24577031 24577268 -164702286 - MER2 DNA MER2_type 0 344 98 2151 118 3 0 chr6 24577268 24577556 -164701998 - AluSx SINE Alu -20 292 4 1561 148 71 53 chr6 24577556 24577656 -164701898 - MER2 DNA MER2_type -246 98 1 2303 109 0 0 chr6 24578852 24579163 -164700391 - AluSx SINE Alu -1 311 1 243 295 84 63 chr6 24581008 24581103 -164698451 + MIR SINE MIR 37 133 -75 206 354 19 50 chr6 24581776 24581937 -164697617 - MIR SINE MIR -75 187 32 288 0 0 0 chr6 24582115 24582147 -164697407 + (CA)n Simple_repeat Simple_repeat 2 33 0 926 172 59 5 chr6 24583763 24583966 -164695588 + L1MB2 LINE L1 5956 6169 -2 647 335 16 12 chr6 24584059 24584316 -164695238 + MIR SINE MIR 5 262 0 23 33 0 0 chr6 24584345 24584375 -164695179 + AT_rich Low_complexity Low_complexity 1 30 0 342 247 12 12 chr6 24584443 24584524 -164695030 + HAL1b LINE L1 65 145 -1203 783 296 34 24 chr6 24584856 24585150 -164694404 - MER102b DNA MER1_type 0 341 45 21 36 0 0 chr6 24585424 24585452 -164694102 + AT_rich Low_complexity Low_complexity 1 28 0 718 226 153 11 chr6 24585921 24586111 -164693443 + MER58A DNA MER1_type 6 222 -2 21 36 0 0 chr6 24586295 24586323 -164693231 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 24586467 24586496 -164693058 + AT_rich Low_complexity Low_complexity 1 29 0 236 262 36 0 chr6 24586622 24586706 -164692848 + L1M4 LINE L1 2378 2464 -3682 1879 226 78 31 chr6 24586706 24587382 -164692172 - L1MEc LINE L1 -3935 2890 2183 336 265 25 101 chr6 24587575 24587813 -164691741 - L1MEc LINE L1 -4811 1833 1517 735 39 64 29 chr6 24587813 24588436 -164691118 + (TA)n Simple_repeat Simple_repeat 1 645 0 580 271 109 26 chr6 24588437 24588698 -164690856 - L1MEc LINE L1 -5176 1649 1352 518 35 0 128 chr6 24588698 24588735 -164690819 + MADE1 DNA Mariner 3 24 -56 2269 96 7 0 chr6 24588735 24589027 -164690527 - AluSg SINE Alu -16 294 1 518 35 0 128 chr6 24589027 24589075 -164690479 + MADE1 DNA Mariner 24 77 -3 580 271 109 26 chr6 24589075 24589153 -164690401 - L1MEc LINE L1 -5473 1352 1282 385 148 267 40 chr6 24589191 24589292 -164690262 - MER58B DNA MER1_type -1 340 217 2252 111 0 0 chr6 24591378 24591676 -164687878 + AluSx SINE Alu 1 298 -14 187 315 157 0 chr6 24593524 24593613 -164685941 + L2 LINE L2 3207 3309 -4 1452 137 0 21 chr6 24594344 24594577 -164684977 - MER30 DNA MER1_type 0 230 3 1184 260 67 48 chr6 24594763 24595347 -164684207 - L1ME LINE L1 -4910 1170 599 207 0 0 0 chr6 24595347 24595370 -164684184 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1548 96 0 5 chr6 24595372 24595569 -164683985 - AluSc SINE Alu -31 278 83 1184 260 67 48 chr6 24595569 24595659 -164683895 - L1ME LINE L1 -5481 599 501 201 122 24 24 chr6 24596087 24596128 -164683426 + A-rich Low_complexity Low_complexity 2 42 0 2538 94 39 0 chr6 24596374 24596755 -164682799 - L1PA13 LINE L1 0 6163 5768 246 62 0 0 chr6 24596758 24596790 -164682764 + U5 snRNA snRNA 9 40 -76 194 125 0 25 chr6 24597004 24597044 -164682510 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 275 261 100 109 chr6 24597450 24597680 -164681874 - L3 LINE CR1 -179 1398 1171 180 359 0 33 chr6 24597702 24597794 -164681760 + MER5A DNA MER1_type 17 105 -84 317 336 40 24 chr6 24598394 24598519 -164681035 - MER5B DNA MER1_type -50 128 2 481 141 0 0 chr6 24599755 24599833 -164679721 + MADE1 DNA Mariner 1 78 -2 279 356 0 0 chr6 24599871 24599958 -164679596 + LTR67 LTR ERVL 130 216 -341 498 238 32 8 chr6 24600139 24600265 -164679289 + LTR67 LTR ERVL 429 557 0 2178 119 0 10 chr6 24602027 24602338 -164677216 + AluSx SINE Alu 1 308 -4 247 286 16 0 chr6 24602358 24602421 -164677133 + MER91B DNA MER1_type 6 69 -121 545 168 63 0 chr6 24602647 24602742 -164676812 - Tigger7 DNA MER2_type -1 2490 2390 * 689 130 35 9 chr6 24602732 24602847 -164676707 - Tigger7 DNA MER2_type -300 433 316 994 140 11 17 chr6 24602862 24603040 -164676514 - L1PB3 LINE L1 -7 6147 5971 2127 236 19 28 chr6 24603051 24603627 -164675927 - L1ME1 LINE L1 -174 5992 5422 237 372 31 16 chr6 24603862 24603991 -164675563 + L2 LINE L2 3183 3313 0 725 275 17 43 chr6 24604189 24604422 -164675132 - MIR SINE MIR 0 262 36 3123 175 88 14 chr6 24605705 24606262 -164673292 - MER44D DNA MER2_type -1882 705 90 2191 96 0 40 chr6 24606262 24606564 -164672990 + AluSg SINE Alu 1 290 -20 3123 175 88 14 chr6 24606564 24606662 -164672892 - MER44D DNA MER2_type -2497 90 1 250 366 84 8 chr6 24608220 24608351 -164671203 + L2 LINE L2 3132 3272 0 3299 72 21 0 chr6 24609228 24609661 -164669893 + MLT2A1 LTR ERVL 3 444 0 2373 84 0 0 chr6 24609693 24609991 -164669563 - AluY SINE Alu -13 298 1 229 365 47 0 chr6 24610159 24610266 -164669288 + MIR SINE MIR 3 114 -148 567 261 114 93 chr6 24610267 24610697 -164668857 + MLT1J1 LTR MaLR 3 441 -5 198 266 98 84 chr6 24610711 24610854 -164668700 + MIR SINE MIR 118 262 0 2390 83 32 69 chr6 24611792 24612199 -164667355 - MER48 LTR ERV1 -2 396 5 415 222 11 38 chr6 24612927 24613112 -164666442 + (TA)n Simple_repeat Simple_repeat 1 180 0 187 400 0 15 chr6 24613250 24613315 -164666239 + MIR SINE MIR 85 148 -60 23 0 0 0 chr6 24613626 24613649 -164665905 + AT_rich Low_complexity Low_complexity 1 23 0 2059 90 3 21 chr6 24614258 24614590 -164664964 - AluSq SINE Alu 0 327 1 585 336 21 21 chr6 24616692 24616933 -164662621 - MIR SINE MIR -15 247 7 807 147 32 108 chr6 24617371 24617622 -164661932 - Charlie1b DNA MER1_type -7 516 285 1049 120 54 0 chr6 24617636 24617803 -164661751 + MSTB2 LTR MaLR 1 176 -281 831 216 0 12 chr6 24617805 24617967 -164661587 - FRAM SINE Alu -17 159 1 1578 178 31 7 chr6 24617967 24618253 -164661301 + MSTB2 LTR MaLR 165 457 0 1061 243 39 4 chr6 24618253 24618512 -164661042 - Charlie1b DNA MER1_type -255 268 1 2061 96 3 81 chr6 24618632 24618955 -164660599 - AluSq SINE Alu -13 300 3 21 0 0 0 chr6 24619000 24619021 -164660533 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 24619275 24619298 -164660256 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr6 24620358 24620381 -164659173 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1901 153 0 10 chr6 24620389 24620684 -164658870 - AluJb SINE Alu -20 292 1 2382 90 3 0 chr6 24621274 24621574 -164657980 - AluSp SINE Alu -12 301 1 22 35 0 0 chr6 24621615 24621644 -164657910 + AT_rich Low_complexity Low_complexity 1 29 0 515 309 124 9 chr6 24623089 24623306 -164656248 + MIR SINE MIR 21 262 0 185 373 0 34 chr6 24627649 24627767 -164651787 + MIR3 SINE MIR 94 207 -1 524 305 30 25 chr6 24627814 24628011 -164651543 + MIR SINE MIR 15 212 -50 186 43 0 0 chr6 24628363 24628386 -164651168 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 406 360 23 11 chr6 24628444 24628619 -164650935 + MIR3 SINE MIR 28 204 -4 221 300 17 0 chr6 24628815 24628875 -164650679 - L2 LINE L2 -8 3264 3204 498 299 58 0 chr6 24629172 24629309 -164650245 + MIR SINE MIR 8 152 -110 215 374 79 14 chr6 24629574 24629788 -164649766 - L2 LINE L2 -834 2480 2253 684 171 173 11 chr6 24629846 24630048 -164649506 - MER33 DNA MER1_type -262 62 1 314 349 76 8 chr6 24630061 24630193 -164649361 - L2 LINE L2 0 3272 3132 1986 99 22 0 chr6 24630296 24630592 -164648962 - AluSg SINE Alu 0 304 3 315 345 94 27 chr6 24630667 24630995 -164648559 - L2 LINE L2 -107 3165 2816 225 320 52 56 chr6 24631078 24631309 -164648245 - L2 LINE L2 -1231 2083 1854 2152 103 36 3 chr6 24631559 24631861 -164647693 - AluSx SINE Alu 0 312 1 331 308 145 9 chr6 24632136 24632350 -164647204 - MIR SINE MIR -13 249 7 207 222 37 19 chr6 24633016 24633070 -164646484 + MIR SINE MIR 121 175 -87 246 32 0 0 chr6 24636288 24636319 -164643235 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 184 342 25 38 chr6 24637097 24637176 -164642378 + MIR SINE MIR 56 133 -75 394 381 118 23 chr6 24637391 24637790 -164641764 - L2 LINE L2 -21 3251 2815 257 273 0 0 chr6 24638749 24638804 -164640750 + polypyrimidine Low_complexity Low_complexity 6 60 0 630 257 23 6 chr6 24640377 24640548 -164639006 - L1ME3 LINE L1 -10 6152 5979 5393 156 48 16 chr6 24642439 24643464 -164636090 + L1MA7 LINE L1 4772 5859 -432 2126 69 4 4 chr6 24643464 24643741 -164635813 + AluY SINE Alu 22 298 -13 5393 156 48 16 chr6 24643741 24644189 -164635365 + L1MA7 LINE L1 5859 6291 0 192 77 0 0 chr6 24646447 24646473 -164633081 + (TA)n Simple_repeat Simple_repeat 2 27 0 548 318 57 0 chr6 24646891 24647083 -164632471 + MIR SINE MIR 58 260 -2 1440 70 0 0 chr6 24647756 24647942 -164631612 - L1PA7 LINE L1 -2 6152 5967 2476 222 30 29 chr6 24648987 24649204 -164630350 + L1PA6 LINE L1 4815 5030 -1124 1497 162 0 34 chr6 24649204 24649470 -164630084 - AluJb SINE Alu -21 291 35 2476 222 30 29 chr6 24649470 24650316 -164629238 + L1PA6 LINE L1 5030 5873 -281 300 378 51 0 chr6 24650316 24650512 -164629042 + L1ME LINE L1 5567 5772 -392 477 275 269 0 chr6 24652058 24652240 -164627314 + MIR SINE MIR 2 232 -30 1361 235 38 35 chr6 24652245 24652641 -164626913 + MLT2C1 LTR ERVL 1 397 0 1967 131 3 3 chr6 24653062 24653353 -164626201 - AluSx SINE Alu -21 291 1 317 269 66 51 chr6 24654398 24654569 -164624985 + MIR SINE MIR 18 191 -66 820 281 12 36 chr6 24654725 24654978 -164624576 - MIR SINE MIR -15 247 1 23 0 0 0 chr6 24655551 24655574 -164623980 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 24655739 24655764 -164623790 + AT_rich Low_complexity Low_complexity 1 25 0 429 311 77 16 chr6 24655890 24656073 -164623481 - MIR SINE MIR -56 206 13 280 187 198 55 chr6 24656496 24656587 -164622967 + MER69A DNA AcHobo 5 108 -69 460 292 65 18 chr6 24657606 24657774 -164621780 - MER5B DNA MER1_type -1 177 2 3728 56 2 0 chr6 24657927 24658395 -164621159 + L1PA7 LINE L1 5683 6151 -3 21 0 0 0 chr6 24658407 24658428 -164621126 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 24658505 24658530 -164621024 + AT_rich Low_complexity Low_complexity 1 25 0 426 219 0 109 chr6 24658592 24658711 -164620843 + MER81 DNA DNA 9 114 0 934 125 6 28 chr6 24659587 24659763 -164619791 + L1MA4 LINE L1 6123 6294 -6 755 199 7 0 chr6 24659791 24659937 -164619617 - L1ME1 LINE L1 -329 5837 5691 305 152 65 33 chr6 24659984 24660076 -164619478 - MER53 DNA DNA 0 189 95 358 307 42 18 chr6 24660778 24660944 -164618610 + MLT1H LTR MaLR 57 226 -323 787 250 105 34 chr6 24661225 24661633 -164617921 - Zaphod DNA AcHobo 0 4031 3595 333 155 36 101 chr6 24661635 24661854 -164617700 - Zaphod DNA AcHobo -3059 972 768 198 294 0 0 chr6 24662635 24662686 -164616868 - L2 LINE L2 -13 3300 3250 24 32 0 0 chr6 24662988 24663019 -164616535 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 24663087 24663120 -164616434 + AT_rich Low_complexity Low_complexity 1 33 0 1950 170 16 34 chr6 24663120 24663503 -164616051 - MLT1B LTR MaLR 0 390 15 492 333 31 13 chr6 24663653 24663881 -164615673 - MIR SINE MIR 0 262 31 23 0 0 0 chr6 24665193 24665216 -164614338 + AT_rich Low_complexity Low_complexity 1 23 0 1675 193 57 79 chr6 24668889 24669396 -164610158 - MLT1D LTR MaLR -8 497 2 246 351 87 54 chr6 24669649 24670164 -164609390 - L2 LINE L2 -418 2896 2365 324 298 140 28 chr6 24670723 24670790 -164608764 + L3 LINE CR1 67 125 -1452 2670 128 21 9 chr6 24670790 24671213 -164608341 - MSTA LTR MaLR 0 428 1 324 298 140 28 chr6 24671213 24671323 -164608231 + L3 LINE CR1 125 264 -1313 553 314 173 28 chr6 24671434 24671965 -164607589 + L3 LINE CR1 716 1323 -254 225 269 60 15 chr6 24671977 24672044 -164607510 - MER34C LTR ERV1 0 585 516 260 66 49 16 chr6 24672052 24672113 -164607441 + (TA)n Simple_repeat Simple_repeat 2 64 0 622 235 50 102 chr6 24672114 24672514 -164607040 - MER39 LTR ERV1 -69 638 260 318 208 42 62 chr6 24672489 24672585 -164606969 - LTR48B LTR ERV1 -547 97 4 * 279 316 68 28 chr6 24672589 24672766 -164606788 + L3 LINE CR1 1350 1533 -44 1784 106 110 7 chr6 24672818 24673091 -164606463 + AluSg SINE Alu 1 301 -9 360 217 65 0 chr6 24673370 24673462 -164606092 - MER5A DNA MER1_type -83 106 9 245 309 249 12 chr6 24673579 24673744 -164605810 + MIR SINE MIR 56 259 -3 246 296 22 52 chr6 24676881 24677016 -164602538 + L2 LINE L2 2925 3055 -217 242 235 12 0 chr6 24677370 24677451 -164602103 + (TA)n Simple_repeat Simple_repeat 1 82 0 186 103 0 0 chr6 24677469 24677498 -164602056 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 277 25 17 chr6 24680054 24680173 -164599381 + L1ME4a LINE L1 5955 6074 -47 431 18 18 0 chr6 24680541 24680597 -164598957 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 870 84 17 0 chr6 24680862 24680981 -164598573 - AluSg/x SINE Alu -18 292 172 300 111 0 0 chr6 24680982 24681027 -164598527 + (T)n Simple_repeat Simple_repeat 1 45 0 205 261 87 14 chr6 24681994 24682063 -164597491 + MIR SINE MIR 30 103 -105 845 196 12 6 chr6 24682189 24682352 -164597202 - FRAM SINE Alu -12 164 1 22 35 0 0 chr6 24683402 24683431 -164596123 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 24684405 24684425 -164595129 + (A)n Simple_repeat Simple_repeat 1 20 0 215 154 0 26 chr6 24685434 24685473 -164594081 + GA-rich Low_complexity Low_complexity 2 39 0 217 159 32 0 chr6 24685546 24685609 -164593945 + GA-rich Low_complexity Low_complexity 1 65 0 320 265 341 0 chr6 24687781 24687913 -164591641 + MIR SINE MIR 9 185 -77 216 143 0 0 chr6 24688686 24688728 -164590826 + (TG)n Simple_repeat Simple_repeat 2 43 0 800 210 10 72 chr6 24689008 24689147 -164590407 - MER5A DNA MER1_type -6 183 58 2270 71 6 16 chr6 24689147 24689458 -164590096 + AluYb8 SINE Alu 1 308 -10 800 210 10 72 chr6 24689458 24689513 -164590041 - MER5A DNA MER1_type -131 58 1 434 293 101 47 chr6 24689586 24690095 -164589459 + MLT1G LTR MaLR 39 595 0 1086 166 10 20 chr6 24690528 24690727 -164588827 + AluJo SINE Alu 1 197 -115 185 283 0 33 chr6 24740752 24740812 -164538742 + MIR SINE MIR 156 213 -49 24 32 0 0 chr6 24741149 24741180 -164538374 + AT_rich Low_complexity Low_complexity 1 31 0 2841 0 0 3 chr6 24741313 24741621 -164537933 - AluYa5 SINE Alu -4 307 1 1938 217 125 96 chr6 24741802 24742984 -164536570 - L1MC5 LINE L1 -49 7912 6697 198 0 0 0 chr6 24744505 24744527 -164535027 + (T)n Simple_repeat Simple_repeat 1 22 0 209 233 0 0 chr6 24745470 24745513 -164534041 + A-rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 24745675 24745699 -164533855 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chr6 24746316 24746357 -164533197 + AT_rich Low_complexity Low_complexity 1 41 0 2339 181 26 28 chr6 24747664 24748129 -164531425 - MLT1C LTR MaLR -3 464 1 2152 127 0 0 chr6 24749423 24749722 -164529832 - AluSx SINE Alu -13 299 1 1351 182 54 124 chr6 24749965 24750465 -164529089 + MLT1C LTR MaLR 3 467 0 2104 122 7 3 chr6 24750826 24751306 -164528248 - AluSg SINE Alu 0 310 3 1906 145 3 3 chr6 24751769 24752051 -164527503 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr6 24752058 24752084 -164527470 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 7352 181 12 29 chr6 24752198 24753479 -164526075 - L1PA16 LINE L1 -26 6140 4839 1319 175 0 118 chr6 24753479 24753827 -164525727 + AluJb SINE Alu 1 307 -5 7352 181 12 29 chr6 24753827 24755205 -164524349 - L1PA16 LINE L1 -1327 4839 3529 1652 205 13 19 chr6 24755204 24755579 -164523975 - L1 LINE L1 -1822 4324 3952 * 276 103 52 0 chr6 24755579 24755637 -164523917 + (TA)n Simple_repeat Simple_repeat 1 61 0 3741 237 43 26 chr6 24755644 24756857 -164522697 - L1 LINE L1 -2653 3493 2260 193 250 21 0 chr6 24757088 24757136 -164522418 - L2 LINE L2 -1 3312 3264 24 32 0 0 chr6 24757406 24757437 -164522117 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 24757487 24757508 -164522046 + AT_rich Low_complexity Low_complexity 1 21 0 307 290 93 0 chr6 24758132 24758239 -164521315 + MIR3 SINE MIR 87 203 -5 567 12 38 0 chr6 24758714 24758794 -164520760 + (TG)n Simple_repeat Simple_repeat 2 84 0 26 74 0 0 chr6 24759811 24759865 -164519689 + AT_rich Low_complexity Low_complexity 1 54 0 416 289 62 58 chr6 24762728 24762936 -164516618 - MIR SINE MIR -27 235 27 34 0 0 0 chr6 24763282 24763316 -164516238 + AT_rich Low_complexity Low_complexity 1 34 0 587 176 8 0 chr6 24763546 24763671 -164515883 + G-rich Low_complexity Low_complexity 5 130 0 1077 187 77 4 chr6 24763677 24763912 -164515642 + MLT1C LTR MaLR 206 457 -10 267 236 36 55 chr6 24765070 24765180 -164514374 + MER117 DNA MER1_type 18 125 -72 297 0 0 0 chr6 24766413 24766446 -164513108 + (CA)n Simple_repeat Simple_repeat 1 33 0 343 300 100 0 chr6 24767013 24767143 -164512411 + MIR SINE MIR 96 238 -24 258 240 40 0 chr6 24767173 24767248 -164512306 - MIR SINE MIR -111 151 74 204 130 43 22 chr6 24767818 24767864 -164511690 + (TA)n Simple_repeat Simple_repeat 1 47 0 2201 112 0 0 chr6 24768699 24768976 -164510578 + AluSg SINE Alu 1 277 -33 216 67 0 0 chr6 24770000 24770030 -164509524 + (CA)n Simple_repeat Simple_repeat 1 30 0 323 345 117 43 chr6 24770582 24770938 -164508616 - L2 LINE L2 0 3313 2914 2557 61 0 0 chr6 24770938 24771249 -164508305 + AluY SINE Alu 1 311 0 323 345 117 43 chr6 24771249 24771353 -164508201 - L2 LINE L2 -399 2914 2819 236 333 33 11 chr6 24771407 24771497 -164508057 - L2 LINE L2 -594 2720 2629 14908 160 21 8 chr6 24771870 24773356 -164506198 - L1MA2 LINE L1 0 7723 6257 2683 16 7 3 chr6 24773356 24773664 -164505890 - AluY SINE Alu -2 309 1 14908 160 21 8 chr6 24773664 24773966 -164505588 - L1MA2 LINE L1 -1466 6257 5960 333 0 0 0 chr6 24773966 24774003 -164505551 + (TG)n Simple_repeat Simple_repeat 2 38 0 14908 160 21 8 chr6 24774003 24776440 -164503114 - L1MA2 LINE L1 -1763 5960 3241 1443 202 0 7 chr6 24776437 24776719 -164502835 + L1M1 LINE L1 441 720 -6845 * 13211 162 74 11 chr6 24776716 24779213 -164500341 - L1MA2 LINE L1 -4893 2672 18 224 291 23 58 chr6 24779217 24779303 -164500251 + MIR SINE MIR 79 161 -101 2094 115 30 0 chr6 24779552 24779906 -164499648 + AluSq SINE Alu 1 363 0 1703 192 6 12 chr6 24779968 24780306 -164499248 - MER58B DNA MER1_type -4 337 2 827 259 42 5 chr6 24781261 24781473 -164498081 + MER58A DNA MER1_type 5 224 0 221 128 21 0 chr6 24781718 24781765 -164497789 + (TG)n Simple_repeat Simple_repeat 2 49 0 1420 179 6 88 chr6 24781983 24782165 -164497389 - AluJo SINE Alu -19 293 147 2415 83 0 0 chr6 24782165 24782465 -164497089 + AluSg SINE Alu 1 300 -10 1420 179 6 88 chr6 24782465 24782601 -164496953 - AluJo SINE Alu -165 147 1 559 291 205 24 chr6 24784207 24784588 -164494966 + MLT1J2 LTR MaLR 1 450 0 180 125 0 0 chr6 24785634 24785666 -164493888 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 512 362 119 15 chr6 24785905 24786173 -164493381 + L2 LINE L2 2977 3272 0 201 236 0 18 chr6 24786907 24786962 -164492592 + (TG)n Simple_repeat Simple_repeat 1 54 0 237 132 0 0 chr6 24787003 24787041 -164492513 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 192 77 0 0 chr6 24788124 24788150 -164491404 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 201 128 51 0 chr6 24788354 24788393 -164491161 + T-rich Low_complexity Low_complexity 2 42 0 1325 226 68 19 chr6 24788759 24789126 -164490428 - ERVL-B1 LTR ERVL -5378 386 2 1513 212 166 22 chr6 24789129 24789176 -164490378 - MLT2B1 LTR ERVL 0 520 481 396 0 0 0 chr6 24789176 24789220 -164490334 + (TG)n Simple_repeat Simple_repeat 1 44 0 363 44 0 0 chr6 24789222 24789267 -164490287 + (GA)n Simple_repeat Simple_repeat 2 46 0 1513 212 166 22 chr6 24789267 24789669 -164489885 - MLT2B1 LTR ERVL -39 481 3 559 157 20 13 chr6 24790065 24790218 -164489336 + CT-rich Low_complexity Low_complexity 3 156 0 1030 258 46 13 chr6 24791877 24792179 -164487375 + L1PB4 LINE L1 1 312 -6537 3767 142 77 1 chr6 24792179 24792840 -164486714 + MER50 LTR ERV1 1 711 -23 319 368 0 0 chr6 24792858 24792983 -164486571 + L1PB4 LINE L1 326 450 -6399 2832 250 10 4 chr6 24793841 24794552 -164485002 + L1PB4 LINE L1 1067 1781 -5068 645 25 0 0 chr6 24794553 24794632 -164484922 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 5563 59 16 41 chr6 24794632 24795778 -164483776 + SVA Other Other 50 866 -520 6647 65 14 41 chr6 24795795 24796814 -164482740 + SVA Other Other 433 1386 0 11142 222 22 14 chr6 24796814 24800643 -164478911 + L1PB4 LINE L1 1773 5655 -1193 3946 145 1 18 chr6 24800643 24801321 -164478233 + L1PB4 LINE L1 6178 6847 -11 288 384 69 6 chr6 24801335 24801494 -164478060 - MIR3 SINE MIR -21 187 19 1291 239 37 17 chr6 24801735 24802090 -164477464 - MLT1A2 LTR MaLR -11 363 2 2111 129 119 35 chr6 24802254 24802597 -164476957 + MSTA LTR MaLR 1 383 -45 2255 102 3 0 chr6 24802597 24802891 -164476663 + AluSp SINE Alu 1 295 -18 2111 129 119 35 chr6 24802891 24802942 -164476612 + MSTA LTR MaLR 383 428 0 2403 81 0 0 chr6 24803014 24803309 -164476245 - AluY SINE Alu -16 295 1 1151 197 22 14 chr6 24803418 24803641 -164475913 + AluJo SINE Alu 84 308 -4 1703 150 3 41 chr6 24803902 24804196 -164475358 + AluSx SINE Alu 1 283 -29 25 0 0 0 chr6 24805064 24805089 -164474465 + AT_rich Low_complexity Low_complexity 1 25 0 372 119 0 0 chr6 24805388 24805447 -164474107 + (CA)n Simple_repeat Simple_repeat 2 60 0 264 286 44 25 chr6 24805685 24805888 -164473666 - L1MC/D LINE L1 -1908 5900 5694 1834 111 92 0 chr6 24805890 24806152 -164473402 + AluSq SINE Alu 12 297 -16 253 250 111 0 chr6 24806154 24806226 -164473328 - LTR50 LTR ERVL -475 320 241 674 258 30 5 chr6 24806490 24806688 -164472866 - MER58A DNA MER1_type -1 223 21 23 78 0 0 chr6 24806908 24806959 -164472595 + AT_rich Low_complexity Low_complexity 1 51 0 1740 120 25 0 chr6 24806971 24807245 -164472309 + MER83C LTR ERV1 1 281 -92 1129 111 24 53 chr6 24807251 24807400 -164472154 + MER83C LTR ERV1 173 316 -57 2138 117 30 7 chr6 24807400 24807699 -164471855 - AluSx SINE Alu -6 306 1 1129 111 24 53 chr6 24807699 24807756 -164471798 + MER83C LTR ERV1 316 373 0 22 0 0 0 chr6 24807830 24807852 -164471702 + AT_rich Low_complexity Low_complexity 1 22 0 443 309 101 72 chr6 24808003 24808151 -164471403 + HAL1b LINE L1 16 158 -1190 273 57 0 0 chr6 24808151 24808186 -164471368 + (TG)n Simple_repeat Simple_repeat 2 36 0 443 309 101 72 chr6 24808186 24808389 -164471165 + HAL1b LINE L1 158 354 -994 345 47 0 0 chr6 24808389 24808432 -164471122 + (CA)n Simple_repeat Simple_repeat 2 44 0 443 309 101 72 chr6 24808432 24808655 -164470899 + HAL1b LINE L1 354 601 -747 1906 218 58 83 chr6 24808655 24808703 -164470851 - MLT2B3 LTR ERVL 0 554 506 695 62 10 0 chr6 24808703 24808800 -164470754 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 1906 218 58 83 chr6 24808800 24809319 -164470235 - MLT2B3 LTR ERVL -48 506 1 443 309 101 72 chr6 24809319 24809366 -164470188 + HAL1b LINE L1 601 645 -703 499 280 67 40 chr6 24809419 24809790 -164469764 + L1MEc LINE L1 1428 1808 -4588 2426 154 5 29 chr6 24809807 24810228 -164469326 + Tigger2a DNA MER2_type 3 413 -21 30 0 0 0 chr6 24810578 24810608 -164468946 + AT_rich Low_complexity Low_complexity 1 30 0 286 274 57 28 chr6 24811899 24812005 -164467549 + MIR SINE MIR 83 191 -71 903 213 23 32 chr6 24812077 24812293 -164467261 - MIR SINE MIR -48 214 1 33 25 0 0 chr6 24812509 24812549 -164467005 + AT_rich Low_complexity Low_complexity 1 40 0 961 236 71 46 chr6 24812554 24812948 -164466606 - L1ME3A LINE L1 -8 6162 5759 433 250 188 18 chr6 24812956 24813232 -164466322 - L1ME3A LINE L1 -554 5608 5286 772 308 89 31 chr6 24813243 24814241 -164465313 - L1ME3A LINE L1 -913 5233 4178 296 378 85 35 chr6 24814347 24814950 -164464604 + L2 LINE L2 1783 2415 -899 27 29 0 0 chr6 24816821 24816855 -164462699 + AT_rich Low_complexity Low_complexity 1 34 0 256 323 55 31 chr6 24817085 24817212 -164462342 + L2 LINE L2 3143 3272 0 188 170 43 0 chr6 24817401 24817448 -164462106 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 2158 132 7 0 chr6 24817637 24817947 -164461607 - AluSq SINE Alu -1 312 1 189 225 0 0 chr6 24818402 24818442 -164461112 + MIR SINE MIR 73 112 -150 21 36 0 0 chr6 24819797 24819825 -164459729 + AT_rich Low_complexity Low_complexity 1 28 0 653 285 26 0 chr6 24820817 24821010 -164458544 + MIR SINE MIR 52 249 -13 361 367 40 46 chr6 24821415 24821938 -164457616 - L2 LINE L2 -337 2977 2458 591 312 68 23 chr6 24821943 24822164 -164457390 - MIR SINE MIR -15 247 17 614 275 93 25 chr6 24822282 24822518 -164457036 + MIR SINE MIR 1 252 -10 208 356 89 0 chr6 24822536 24822597 -164456957 - L2 LINE L2 -1009 2305 2251 1802 205 3 19 chr6 24822597 24822968 -164456586 - MLT1A1 LTR MaLR 0 365 1 208 356 89 0 chr6 24822968 24823007 -164456547 - L2 LINE L2 -1063 2251 2196 372 253 72 103 chr6 24823163 24823511 -164456043 + HAL1 LINE L1 1439 1775 -732 377 282 122 69 chr6 24823592 24823751 -164455803 + L1M4 LINE L1 3877 4026 -2120 847 211 0 24 chr6 24823751 24823917 -164455637 - FRAM SINE Alu -3 163 2 377 282 122 69 chr6 24823917 24824178 -164455376 + L1M4 LINE L1 4026 4320 -1826 285 265 76 60 chr6 24824343 24824445 -164455109 + L1MC4a LINE L1 2678 2777 -3369 1542 199 2 91 chr6 24824445 24824851 -164454703 - MLT1A2 LTR MaLR -4 370 1 285 265 76 60 chr6 24824851 24825235 -164454319 + L1MC4a LINE L1 2777 3172 -2974 2448 79 0 3 chr6 24825405 24825708 -164453846 + AluSg SINE Alu 3 304 -6 1971 125 7 0 chr6 24825848 24826159 -164453395 + AluSx SINE Alu 1 313 0 2411 93 0 0 chr6 24826605 24826915 -164452639 + AluSx SINE Alu 1 310 -2 658 126 10 0 chr6 24827077 24827180 -164452374 + AluSp/q SINE Alu 201 304 -9 417 291 97 33 chr6 24827235 24827565 -164451989 + L1MC4a LINE L1 4491 4841 -1305 333 273 22 71 chr6 24827684 24827867 -164451687 + L1MC4a LINE L1 4994 5167 -979 1404 260 117 47 chr6 24827984 24828703 -164450851 + L1MC4a LINE L1 5260 6028 -1780 4888 28 0 0 chr6 24828761 24829333 -164450221 + L1PA3 LINE L1 5584 6155 0 21 0 0 31 chr6 24829333 24829346 -164450208 + AT_rich Low_complexity Low_complexity 1 13 -18 2938 60 3 5 chr6 24829346 24829726 -164449828 + L1PA7 LINE L1 5769 6147 -7 21 0 0 31 chr6 24829726 24829744 -164449810 + AT_rich Low_complexity Low_complexity 13 31 0 3020 137 46 61 chr6 24829999 24830654 -164448900 - MER39B LTR ERV1 -4 649 5 1267 139 48 10 chr6 24830677 24831109 -164448445 - LTR54 LTR ERV1 0 510 1 261 0 0 0 chr6 24832030 24832059 -164447495 + (T)n Simple_repeat Simple_repeat 1 29 0 2116 79 58 7 chr6 24833155 24833447 -164446107 + AluY SINE Alu 3 309 -2 2439 119 23 3 chr6 24834400 24834752 -164444802 - THE1B LTR MaLR -5 359 1 3425 116 51 75 chr6 24834995 24835659 -164443895 + MER39B LTR ERV1 6 653 0 401 237 51 8 chr6 24835849 24835967 -164443587 - MER103 DNA DNA -43 123 1 2012 139 0 23 chr6 24836409 24836718 -164442836 + AluSx SINE Alu 1 302 -10 237 83 0 0 chr6 24837514 24837550 -164442004 + (TC)n Simple_repeat Simple_repeat 1 36 0 212 57 0 29 chr6 24837591 24837626 -164441928 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 387 358 40 0 chr6 24838411 24838587 -164440967 + MIR SINE MIR 12 194 -68 2457 51 3 3 chr6 24838746 24839041 -164440513 + AluY SINE Alu 1 295 -16 29 28 0 0 chr6 24839419 24839455 -164440099 + AT_rich Low_complexity Low_complexity 1 36 0 532 330 35 5 chr6 24840545 24840742 -164438812 + L2 LINE L2 1728 1930 -1384 2548 246 70 21 chr6 24840746 24841845 -164437709 + L1ME1 LINE L1 5013 6166 0 630 265 13 57 chr6 24841901 24842131 -164437423 + L2 LINE L2 1918 2137 -1177 267 308 26 0 chr6 24842127 24842205 -164437349 - L2 LINE L2 -240 3073 2994 * 825 194 22 39 chr6 24842220 24842400 -164437154 - MER45A DNA AcHobo -1 177 1 895 317 54 38 chr6 24842403 24843128 -164436426 + L2 LINE L2 2550 3290 -23 216 0 0 0 chr6 24843128 24843152 -164436402 + (CA)n Simple_repeat Simple_repeat 2 25 0 354 139 12 93 chr6 24843253 24843339 -164436215 + MER116 DNA Mariner 2 80 0 216 0 0 0 chr6 24844734 24844758 -164434796 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 306 0 0 0 chr6 24844757 24844791 -164434763 + (TG)n Simple_repeat Simple_repeat 2 35 0 2509 52 0 19 chr6 24845012 24845321 -164434233 - AluY SINE Alu -8 303 1 391 302 16 31 chr6 24845664 24845793 -164433761 + MER5B DNA MER1_type 1 127 -51 596 240 53 7 chr6 24845810 24845960 -164433594 - L1ME3A LINE L1 -9 6161 6005 228 303 0 15 chr6 24845966 24846032 -164433522 + MER5B DNA MER1_type 114 178 0 323 369 38 0 chr6 24846125 24846282 -164433272 - MIR SINE MIR -54 208 46 461 266 190 11 chr6 24846283 24846467 -164433087 + MIR SINE MIR 8 224 -38 186 103 0 0 chr6 24846935 24846964 -164432590 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 190 267 229 19 chr6 24847509 24847614 -164431940 + MIR SINE MIR 17 143 -65 25 31 0 0 chr6 24848000 24848032 -164431522 + AT_rich Low_complexity Low_complexity 1 32 0 862 208 89 10 chr6 24848642 24848844 -164430710 - MER20 DNA MER1_type 0 219 2 385 267 29 0 chr6 24848916 24849021 -164430533 - MER103 DNA DNA -46 120 13 2125 116 3 0 chr6 24849182 24849475 -164430079 - AluSq SINE Alu -17 296 3 297 302 120 71 chr6 24849873 24850307 -164429247 + MLT1K LTR MaLR 134 588 0 2411 55 0 23 chr6 24852039 24852347 -164427207 + AluY SINE Alu 9 309 -2 577 296 71 15 chr6 24852373 24852569 -164426985 + MIR SINE MIR 32 238 -24 2220 113 0 3 chr6 24853687 24853997 -164425557 - AluSq SINE Alu -2 311 3 394 247 10 10 chr6 24854102 24854199 -164425355 - MER63 DNA MER1_type -62 774 678 1943 168 32 121 chr6 24856551 24857104 -164422450 + MLT1D LTR MaLR 2 505 0 272 155 0 17 chr6 24857149 24857207 -164422347 + (TA)n Simple_repeat Simple_repeat 1 57 0 2098 101 0 11 chr6 24857757 24858075 -164421479 - AluSx SINE Alu 0 315 1 190 0 67 0 chr6 24859119 24859149 -164420405 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1142 213 101 19 chr6 24859174 24859432 -164420122 + AluJo SINE Alu 1 279 -33 371 111 0 0 chr6 24859432 24859486 -164420068 + Alu SINE Alu 246 299 -3 2220 113 0 7 chr6 24861564 24861873 -164417681 - AluSq SINE Alu -6 307 1 2411 82 3 0 chr6 24862137 24862440 -164417114 - AluY SINE Alu -7 304 1 582 87 47 13 chr6 24865251 24865400 -164414154 + (CA)n Simple_repeat Simple_repeat 2 155 0 216 0 0 0 chr6 24865597 24865621 -164413933 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 225 296 185 37 chr6 24865641 24865776 -164413778 + MER5A DNA MER1_type 3 157 -32 * 475 270 169 7 chr6 24865660 24865808 -164413746 - MER5A DNA MER1_type -6 183 12 203 274 55 0 chr6 24866437 24866510 -164413044 + L2 LINE L2 561 637 -2677 525 345 101 27 chr6 24866739 24867302 -164412252 + L2 LINE L2 1465 2069 -1245 1951 166 7 0 chr6 24867625 24867927 -164411627 - AluJb SINE Alu -8 304 1 192 343 78 60 chr6 24868638 24868757 -164410797 + L2 LINE L2 3104 3228 -44 1678 177 34 95 chr6 24868757 24868872 -164410682 + MLT1C LTR MaLR 2 122 -345 2361 67 0 0 chr6 24868872 24869184 -164410370 + AluY SINE Alu 1 312 0 1678 177 34 95 chr6 24869184 24869563 -164409991 + MLT1C LTR MaLR 122 467 0 192 343 78 60 chr6 24869563 24869609 -164409945 + L2 LINE L2 3228 3272 0 291 231 97 75 chr6 24869692 24869826 -164409728 + MIR SINE MIR 126 262 0 275 279 19 39 chr6 24871994 24872098 -164407456 - MER20B DNA MER1_type -619 164 63 250 192 14 14 chr6 24873232 24873305 -164406249 + GA-rich Low_complexity Low_complexity 2 74 0 335 208 19 38 chr6 24874143 24874249 -164405305 + L1MC5 LINE L1 7810 7913 -48 2486 19 0 0 chr6 24874251 24874569 -164404985 - L1PA3 LINE L1 -754 5392 5075 6335 35 0 0 chr6 24874569 24875311 -164404243 + L1PA3 LINE L1 5405 6155 0 2265 213 33 59 chr6 24875479 24876107 -164403447 - LTR9 LTR ERV1 0 612 1 272 340 81 32 chr6 24876617 24876802 -164402752 + MIR SINE MIR 12 205 -57 298 292 57 57 chr6 24876966 24877175 -164402379 + L2 LINE L2 2071 2279 -1035 2170 88 7 29 chr6 24978487 24978795 -164300759 - AluSx SINE Alu -7 305 5 231 313 91 40 chr6 24979553 24979652 -164299902 - MIR SINE MIR -89 119 16 2076 107 0 31 chr6 24979949 24980278 -164299276 + AluSg SINE Alu 1 320 0 2266 99 3 7 chr6 24980728 24981031 -164298523 - AluSx SINE Alu -10 302 1 858 225 38 21 chr6 24982874 24983110 -164296444 - MLT1C LTR MaLR -225 242 3 311 200 57 0 chr6 24983127 24983197 -164296357 - L1ME LINE L1 -274 5847 5774 186 225 25 0 chr6 24983900 24983940 -164295614 + L2 LINE L2 3151 3191 -81 657 308 25 1 chr6 24985340 24985551 -164294003 - MIR SINE MIR -3 259 45 240 319 25 34 chr6 24985905 24986024 -164293530 - L2 LINE L2 0 3272 3155 476 253 68 48 chr6 24986426 24986716 -164292838 - L1ME4a LINE L1 -216 5905 5618 243 271 0 0 chr6 24986716 24986775 -164292779 + tRNA-Lys-AAG tRNA tRNA 1 59 -17 2222 162 25 33 chr6 24986781 24987341 -164292213 + MLT2A2 LTR ERVL 5 554 0 314 313 101 23 chr6 24987430 24987647 -164291907 - L1ME4a LINE L1 -2296 5512 5279 519 347 46 44 chr6 24987790 24988470 -164291084 - L2 LINE L2 -43 3229 2556 405 176 44 0 chr6 24990550 24990618 -164288936 - MER63 DNA MER1_type -317 743 673 418 252 61 48 chr6 24991936 24992083 -164287471 + MIR SINE MIR 83 231 -31 2229 113 0 3 chr6 24992128 24992430 -164287124 - AluSp SINE Alu -12 301 1 21 36 0 0 chr6 24992430 24992458 -164287096 + AT_rich Low_complexity Low_complexity 1 28 0 843 306 104 44 chr6 24992516 24993238 -164286316 - L1MC4a LINE L1 -1751 6057 5293 866 282 135 18 chr6 24993244 24993872 -164285682 - L1MC4a LINE L1 -884 5262 4561 3707 107 8 8 chr6 24994462 24994969 -164284585 + MER84 LTR ERV1 1 507 0 313 242 0 0 chr6 24995331 24995397 -164284157 + MIR SINE MIR 134 199 -63 25 0 0 0 chr6 24996139 24996164 -164283390 + AT_rich Low_complexity Low_complexity 1 25 0 183 42 0 0 chr6 24996425 24996449 -164283105 + (TC)n Simple_repeat Simple_repeat 2 25 0 514 200 24 106 chr6 24996613 24996783 -164282771 - MIR SINE MIR 0 262 107 563 266 44 0 chr6 24997426 24997584 -164281970 + MIR SINE MIR 98 262 0 2259 106 3 25 chr6 24998266 24998586 -164280968 - AluSp SINE Alu 0 313 1 402 334 180 23 chr6 24998922 24999227 -164280327 - L2 LINE L2 -41 3272 2920 898 201 49 22 chr6 25000141 25000325 -164279229 - MER5A DNA MER1_type 0 189 1 17715 36 1 0 chr6 25001089 25003887 -164275667 + L1PA3 LINE L1 3355 6152 -3 182 37 37 0 chr6 25005218 25005245 -164274309 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 276 354 94 68 chr6 25005309 25005693 -164273861 - L2 LINE L2 -50 3222 2829 1807 144 0 11 chr6 25006057 25006367 -164273187 + AluSx SINE Alu 1 307 0 2142 200 26 32 chr6 25007184 25007649 -164271905 + MLT1C LTR MaLR 6 467 0 1888 113 8 11 chr6 25007938 25008203 -164271351 + AluSx SINE Alu 39 302 -10 206 213 43 0 chr6 25008318 25008365 -164271189 + GA-rich Low_complexity Low_complexity 4 52 0 241 241 0 0 chr6 25008477 25008531 -164271023 + HsTC2 DNA Tc2 1238 1291 -607 190 268 49 49 chr6 25008850 25008932 -164270622 - MIR SINE MIR -109 153 72 5255 124 6 34 chr6 25008973 25009236 -164270318 - L1PA16 LINE L1 0 6166 5897 1959 131 18 3 chr6 25009236 25009519 -164270035 + AluSx SINE Alu 1 287 -25 5255 124 6 34 chr6 25009519 25010086 -164269468 - L1PA16 LINE L1 -269 5897 5359 2198 121 0 31 chr6 25010086 25010408 -164269146 - AluSx SINE Alu 0 312 1 864 247 30 46 chr6 25010460 25010723 -164268831 + MIR SINE MIR 2 260 -2 380 335 108 43 chr6 25011316 25012048 -164267506 + L2 LINE L2 2464 3255 -58 5876 58 9 7 chr6 25012408 25013166 -164266388 + L1PA8 LINE L1 5413 6172 0 225 0 0 0 chr6 25013193 25013218 -164266336 + (T)n Simple_repeat Simple_repeat 1 25 0 3701 157 19 7 chr6 25013505 25014198 -164265356 + L1MA5 LINE L1 5515 6215 -85 2860 186 12 5 chr6 25014343 25014945 -164264609 + L1P LINE L1 4757 5362 -784 2235 116 0 10 chr6 25014945 25015256 -164264298 + AluY SINE Alu 1 308 -3 568 257 47 0 chr6 25015532 25015703 -164263851 + MER112 DNA MER1_type 81 259 -1 775 218 84 106 chr6 25016738 25017013 -164262541 + MLT1D LTR MaLR 199 505 0 535 184 10 0 chr6 25017013 25017116 -164262438 + MLT1D-int LTR MaLR 1 104 -1267 740 266 171 36 chr6 25017116 25017560 -164261994 + MLT1D LTR MaLR 1 504 -1 4097 211 22 82 chr6 25017561 25018833 -164260721 + MLT1D-int LTR MaLR 1 1195 -176 883 243 181 35 chr6 25018835 25019177 -164260377 + MLT1D LTR MaLR 112 503 -2 928 292 148 49 chr6 25019225 25019852 -164259702 + L3 LINE CR1 887 1575 -2 791 199 0 0 chr6 25020641 25020787 -164258767 + AluJb SINE Alu 1 146 -166 180 0 0 0 chr6 25020851 25020871 -164258683 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2061 141 7 10 chr6 25021359 25021663 -164257891 + AluSx SINE Alu 1 303 -9 1975 147 0 3 chr6 25022211 25022517 -164257037 + AluJb SINE Alu 1 305 -7 926 227 12 16 chr6 25022698 25022949 -164256605 + MER76 LTR ERV 1 250 -438 906 228 25 40 chr6 25023017 25023293 -164256261 + MER76 LTR ERV 384 655 -33 319 359 61 0 chr6 25023929 25024060 -164255494 - MIR SINE MIR -111 151 13 11582 185 17 38 chr6 25024166 25024217 -164255337 - L1PB3 LINE L1 -313 5841 5790 384 22 0 0 chr6 25024217 25024262 -164255292 + (TG)n Simple_repeat Simple_repeat 2 46 0 11582 185 17 38 chr6 25024262 25025300 -164254254 - L1PB3 LINE L1 -364 5790 4732 296 59 98 0 chr6 25025300 25025351 -164254203 + MADE1 DNA Mariner 1 56 -24 11582 185 17 38 chr6 25025351 25026149 -164253405 - L1PB3 LINE L1 -1422 4732 3919 2416 90 0 0 chr6 25026149 25026460 -164253094 - AluY SINE Alu 0 311 1 11582 185 17 38 chr6 25026460 25028113 -164251441 - L1PB3 LINE L1 -2235 3919 2322 348 24 0 0 chr6 25028184 25028225 -164251329 + (CA)n Simple_repeat Simple_repeat 2 42 0 607 232 56 25 chr6 25028427 25028711 -164250843 - L1M4 LINE L1 -1639 4507 4215 2215 83 0 0 chr6 25031324 25031600 -164247954 - AluSq SINE Alu -1 312 37 847 154 29 87 chr6 25031978 25032186 -164247368 - MLT2B3 LTR ERVL -8 546 351 349 313 112 0 chr6 25034010 25034144 -164245410 + MIR SINE MIR 34 182 -80 1300 139 109 98 chr6 25034742 25034906 -164244648 + THE1C LTR MaLR 1 162 -213 642 91 0 0 chr6 25034906 25035005 -164244549 + (CTCG)n Simple_repeat Simple_repeat 2 100 0 1300 139 109 98 chr6 25035005 25035208 -164244346 + THE1C LTR MaLR 162 372 -3 2831 182 64 49 chr6 25035348 25036068 -164243486 - MER45B DNA AcHobo 0 1040 310 907 193 25 35 chr6 25036077 25036279 -164243275 - MER45B DNA AcHobo -838 202 3 304 252 89 49 chr6 25036279 25036401 -164243153 + MER112 DNA MER1_type 128 254 -6 474 338 152 0 chr6 25036412 25036622 -164242932 + MIR SINE MIR 20 261 -1 25 0 0 0 chr6 25037080 25037105 -164242449 + AT_rich Low_complexity Low_complexity 1 25 0 1504 215 20 7 chr6 25037105 25037403 -164242151 + AluJo SINE Alu 1 302 -10 647 347 133 25 chr6 25039321 25040010 -164239544 + L2 LINE L2 1752 2515 -799 328 369 92 10 chr6 25040561 25040767 -164238787 + L2 LINE L2 2836 3058 -214 181 279 59 15 chr6 25040899 25040967 -164238587 + L2 LINE L2 3186 3256 -16 1916 142 21 21 chr6 25043628 25043965 -164235589 - MER1B DNA MER1_type -1 338 2 2199 184 29 45 chr6 25043994 25044506 -164235048 - MLT1D LTR MaLR 0 505 2 1892 323 131 22 chr6 25044721 25046053 -164233501 - L2 LINE L2 -50 3263 1787 2270 97 10 3 chr6 25047223 25047531 -164232023 + AluSp SINE Alu 1 310 -3 317 232 80 0 chr6 25048460 25048572 -164230982 + L1ME4a LINE L1 5804 5924 -197 204 97 0 0 chr6 25048576 25048607 -164230947 + (TG)n Simple_repeat Simple_repeat 1 31 0 303 130 0 0 chr6 25048607 25048661 -164230893 + (GA)n Simple_repeat Simple_repeat 2 55 0 310 261 202 17 chr6 25048661 25048780 -164230774 + L1ME4a LINE L1 5976 6116 -5 263 104 21 0 chr6 25049489 25049537 -164230017 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 319 378 13 42 chr6 25049828 25050066 -164229488 + L3b LINE CR1 1326 1556 -27 317 217 217 26 chr6 25050066 25050218 -164229336 + L3b LINE CR1 1201 1381 -202 29068 116 14 58 chr6 25051268 25057686 -164221868 - L1PA7 LINE L1 -13 6141 13 367 278 37 0 chr6 25059063 25059171 -164220383 - MIR SINE MIR 0 262 151 1847 152 0 14 chr6 25059173 25059469 -164220085 + AluSx SINE Alu 1 292 -20 213 121 0 0 chr6 25059493 25059526 -164220028 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 271 215 19 47 chr6 25059665 25059772 -164219782 + HAL1 LINE L1 2029 2132 -375 1850 196 63 42 chr6 25059988 25060133 -164219421 + LTR40a LTR ERVL 3 143 -376 940 231 33 0 chr6 25060133 25060345 -164219209 + MER20 DNA MER1_type 1 219 0 1850 196 63 42 chr6 25060345 25060433 -164219121 + LTR40a LTR ERVL 143 228 -291 438 148 11 0 chr6 25060433 25060521 -164219033 + L1MB4 LINE L1 6088 6176 -4 1850 196 63 42 chr6 25060521 25060792 -164218762 + LTR40a LTR ERVL 228 519 0 354 281 70 47 chr6 25061629 25061800 -164217754 - HAL1 LINE L1 -1 2506 2332 45 45 0 0 chr6 25061862 25061928 -164217626 + AT_rich Low_complexity Low_complexity 1 66 0 3245 250 102 47 chr6 25062070 25064203 -164215351 - HAL1 LINE L1 -237 2270 4 1329 25 0 6 chr6 25065363 25065522 -164214032 - L1PA5 LINE L1 -8 6146 5989 465 35 0 0 chr6 25065522 25065580 -164213974 + L1PA4 LINE L1 5890 5947 -208 31 0 0 0 chr6 25067330 25067361 -164212193 + AT_rich Low_complexity Low_complexity 1 31 0 207 301 36 24 chr6 25067677 25067760 -164211794 + MER5A DNA MER1_type 11 94 -95 185 321 36 12 chr6 25067727 25067811 -164211743 - MER5A DNA MER1_type -87 102 17 * 532 288 42 42 chr6 25067913 25068125 -164211429 + MIR SINE MIR 50 261 -1 951 126 77 13 chr6 25068824 25069108 -164210446 - MLT1B LTR MaLR 0 390 7 471 259 52 7 chr6 25069462 25069597 -164209957 + MIR SINE MIR 71 211 -51 180 311 0 0 chr6 25069897 25069942 -164209612 + L3 LINE CR1 891 935 -642 402 74 0 0 chr6 25070160 25070214 -164209340 + (TG)n Simple_repeat Simple_repeat 1 54 0 2078 117 16 10 chr6 25071296 25071603 -164207951 - AluSx SINE Alu -3 309 1 288 356 73 26 chr6 25071737 25071928 -164207626 + MIR SINE MIR 28 227 -35 4369 184 41 13 chr6 25072565 25074403 -164205151 - L1MB3 LINE L1 0 6183 4296 213 290 161 11 chr6 25075151 25075278 -164204276 - MIR SINE MIR -23 185 45 2331 80 0 13 chr6 25075311 25075623 -164203931 + AluY SINE Alu 1 308 -3 373 285 244 0 chr6 25075723 25075895 -164203659 - MIR SINE MIR -31 231 18 2505 73 0 0 chr6 25075927 25076228 -164203326 - AluY SINE Alu -10 301 1 2470 77 3 3 chr6 25076317 25076628 -164202926 - AluY SINE Alu 0 311 1 620 215 224 5 chr6 25076922 25077127 -164202427 + MIR SINE MIR 10 259 -3 2598 129 42 4 chr6 25078940 25079397 -164200157 + L1MA8 LINE L1 5808 6281 -10 1431 191 14 24 chr6 25079589 25079882 -164199672 - AluJo SINE Alu -22 290 1 23 0 0 0 chr6 25080947 25080970 -164198584 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr6 25082413 25082462 -164197092 + AT_rich Low_complexity Low_complexity 1 49 0 2030 104 36 4 chr6 25082871 25083181 -164196373 - AluSq SINE Alu 0 319 1 2075 118 0 16 chr6 25085998 25086302 -164193252 + AluSc SINE Alu 1 299 -10 8978 168 52 11 chr6 25087047 25088820 -164190734 - L1PBa LINE L1 -5016 1847 1 251 164 49 16 chr6 25088829 25088890 -164190664 - L1MA7 LINE L1 -112 6179 6117 712 266 111 30 chr6 25088903 25089413 -164190141 - L1MB3 LINE L1 -2502 3644 3071 984 161 0 29 chr6 25091878 25092052 -164187502 - AluJo SINE Alu -43 269 101 392 276 98 37 chr6 25092143 25092306 -164187248 + MIR3 SINE MIR 23 195 -13 199 381 83 32 chr6 25093715 25093993 -164185561 - L3 LINE CR1 -23 1554 1263 759 242 113 17 chr6 25094434 25094665 -164184889 - MIR SINE MIR 0 262 10 264 30 0 0 chr6 25094734 25094767 -164184787 + (CA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr6 25095072 25095108 -164184446 + (TG)n Simple_repeat Simple_repeat 2 37 0 479 286 74 114 chr6 25095395 25095850 -164183704 + HAL1 LINE L1 813 1284 -1223 1720 145 18 4 chr6 25095850 25096126 -164183428 + AluSx SINE Alu 1 280 -32 479 286 74 114 chr6 25096126 25096153 -164183401 + HAL1 LINE L1 1284 1311 -1196 966 65 53 6 chr6 25096153 25096323 -164183231 + GA-rich Low_complexity Low_complexity 3 180 0 479 286 74 114 chr6 25096323 25096551 -164183003 + HAL1 LINE L1 1311 1496 -1011 2165 90 6 0 chr6 25096754 25097065 -164182489 + L1PA4 LINE L1 5843 6155 0 1916 149 41 33 chr6 25097439 25097801 -164181753 - MLT1A1 LTR MaLR 0 365 1 1968 126 13 33 chr6 25097978 25098279 -164181275 + AluJb SINE Alu 1 295 -17 236 226 137 48 chr6 25098290 25098414 -164181140 + HAL1 LINE L1 2295 2429 -78 237 288 106 0 chr6 25098588 25098654 -164180900 - L2 LINE L2 -219 3053 2981 356 306 6 38 chr6 25098720 25098880 -164180674 - L2 LINE L2 -290 2982 2828 530 301 109 18 chr6 25100055 25100284 -164179270 - MIR SINE MIR -1 261 12 2349 109 0 0 chr6 25100409 25100713 -164178841 + AluSg SINE Alu 1 304 -6 2033 164 3 0 chr6 25101107 25101406 -164178148 + AluSx SINE Alu 1 300 -12 718 291 52 20 chr6 25101436 25101780 -164177774 + MLT1J1 LTR MaLR 63 417 -29 2189 116 3 3 chr6 25101987 25102289 -164177265 + AluSx SINE Alu 1 302 -10 1931 141 0 3 chr6 25102640 25102930 -164176624 - AluSq SINE Alu -24 289 1 520 249 69 42 chr6 25103224 25103585 -164175969 + L1MEd LINE L1 833 1203 -4916 1032 280 45 84 chr6 25103863 25104914 -164174640 - HERV16 LTR ERVL -2898 2098 1585 558 340 18 14 chr6 25105187 25105466 -164174088 - HERV16 LTR ERVL -3799 1197 918 419 122 131 97 chr6 25105987 25106176 -164173378 + MER4A LTR ERV1 1 203 -262 561 233 88 35 chr6 25106476 25106752 -164172802 + MER4C LTR ERV1 275 459 -6 543 325 5 0 chr6 25106761 25106952 -164172602 - HERV16 LTR ERVL -4764 232 41 510 220 72 151 chr6 25106994 25107371 -164172183 - LTR16A1 LTR ERVL -2 455 109 647 295 112 44 chr6 25107577 25108861 -164170693 + L1M4 LINE L1 2885 4256 -1890 2552 54 0 0 chr6 25108880 25109178 -164170376 + AluY SINE Alu 1 298 -13 1031 186 13 0 chr6 25109178 25109404 -164170150 - L1 LINE L1 -1507 4639 4411 237 33 0 0 chr6 25109916 25109946 -164169608 + (CA)n Simple_repeat Simple_repeat 1 30 0 293 270 22 0 chr6 25110019 25110108 -164169446 + MIR SINE MIR 172 262 0 285 336 90 0 chr6 25110242 25110364 -164169190 - MIR SINE MIR -89 173 41 190 313 75 0 chr6 25110662 25110729 -164168825 - L2 LINE L2 -1 3312 3241 1125 210 46 65 chr6 25110882 25111254 -164168300 + MLT1A1 LTR MaLR 1 365 0 420 278 126 16 chr6 25111895 25112083 -164167471 - MIR SINE MIR -22 240 29 8643 179 33 7 chr6 25112328 25115502 -164164052 + L1PBa LINE L1 1734 4990 -1872 22 0 0 0 chr6 25115676 25115698 -164163856 + AT_rich Low_complexity Low_complexity 1 22 0 198 359 80 31 chr6 25117604 25117955 -164161599 + L2 LINE L2 1777 2144 -1170 853 200 0 7 chr6 25117961 25118116 -164161438 - FRAM SINE Alu -23 153 1 416 329 189 23 chr6 25118116 25118645 -164160909 + L2 LINE L2 2130 2746 -568 2283 133 78 10 chr6 25118646 25119046 -164160508 + L1MA8 LINE L1 5861 6287 -4 222 91 0 0 chr6 25119688 25119721 -164159833 + (TG)n Simple_repeat Simple_repeat 2 34 0 15536 51 0 5 chr6 25119953 25121859 -164157695 - L1P LINE L1 -4244 1902 6 1854 126 32 0 chr6 25122016 25122318 -164157236 - AluSp SINE Alu 0 311 1 194 212 0 0 chr6 25122321 25122354 -164157200 - MIR SINE MIR -229 33 1 2245 89 4 0 chr6 25122859 25123163 -164156391 - AluSx SINE Alu 0 307 3 627 319 113 0 chr6 25124759 25124988 -164154566 - MIR SINE MIR -4 258 4 527 262 211 23 chr6 25125113 25125369 -164154185 + L2 LINE L2 2069 2372 -942 832 311 113 23 chr6 25125421 25125958 -164153596 + L2 LINE L2 2734 3313 0 185 287 223 0 chr6 25125947 25126041 -164153513 - MIR3 SINE MIR -32 176 62 * 2200 90 27 0 chr6 25126831 25126953 -164152601 + AluY SINE Alu 1 118 -193 333 0 0 0 chr6 25126953 25126990 -164152564 + (CA)n Simple_repeat Simple_repeat 2 38 0 2200 90 27 0 chr6 25126990 25127167 -164152387 + AluY SINE Alu 118 308 -3 1675 81 27 9 chr6 25128093 25128314 -164151240 + L1PA8 LINE L1 5941 6165 -7 202 333 108 11 chr6 25129340 25129433 -164150121 - MIR SINE MIR -95 167 66 434 299 22 15 chr6 25130019 25130153 -164149401 + MIR3 SINE MIR 67 201 -7 504 254 68 59 chr6 25131354 25131590 -164147964 + L2 LINE L2 3033 3270 -43 307 286 61 27 chr6 25232431 25232578 -164046976 - MIR SINE MIR -2 260 109 26 0 0 0 chr6 25235864 25235890 -164043664 + AT_rich Low_complexity Low_complexity 1 26 0 226 322 102 17 chr6 25235890 25236008 -164043546 - L2 LINE L2 0 3313 3186 202 196 43 0 chr6 25236882 25236928 -164042626 - MER91C DNA MER1_type -36 104 57 639 98 0 0 chr6 25236941 25237033 -164042521 + (TA)n Simple_repeat Simple_repeat 1 92 0 1798 135 193 14 chr6 25237776 25238124 -164041430 - MSTA LTR MaLR -18 410 1 1086 213 57 92 chr6 25238235 25238639 -164040915 + MLT1B LTR MaLR 1 390 0 208 139 0 0 chr6 25239563 25239599 -164039955 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 971 194 16 0 chr6 25240247 25240433 -164039121 + MER5A DNA MER1_type 1 189 0 1049 276 103 61 chr6 25241204 25241766 -164037788 + MLT2F LTR ERVL 21 612 -51 1514 149 35 116 chr6 25241766 25242163 -164037391 - MLT1A1 LTR MaLR 0 365 1 1049 276 103 61 chr6 25242163 25242209 -164037345 + MLT2F LTR ERVL 612 655 -8 281 234 26 26 chr6 25242216 25242293 -164037261 + HERVL-F LTR ERVL 4 80 -5574 367 331 40 40 chr6 25242463 25242765 -164036789 - MLT1I LTR MaLR -45 364 63 351 310 38 70 chr6 25243040 25243327 -164036227 + HAL1b LINE L1 273 550 -798 2071 105 36 10 chr6 25244222 25244527 -164035027 + AluSp SINE Alu 1 313 0 297 303 89 23 chr6 25244951 25245428 -164034126 + L1MC/D LINE L1 3589 4097 -2049 15154 141 35 29 chr6 25245785 25247374 -164032180 + Tigger4(Zombi) DNA MER2_type 1 1616 -1115 1775 154 0 4 chr6 25247374 25247646 -164031908 - AluSx SINE Alu -13 299 29 15154 141 35 29 chr6 25247646 25248768 -164030786 + Tigger4(Zombi) DNA MER2_type 1616 2729 -2 23 68 0 0 chr6 25248815 25248859 -164030695 + AT_rich Low_complexity Low_complexity 1 44 0 374 305 78 59 chr6 25248961 25249217 -164030337 + L1MC/D LINE L1 4759 5019 -1127 23 0 0 0 chr6 25249359 25249382 -164030172 + AT_rich Low_complexity Low_complexity 1 23 0 470 339 76 31 chr6 25249458 25249930 -164029624 + L1MC/D LINE L1 5261 5760 -674 24 67 0 0 chr6 25250233 25250278 -164029276 + AT_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr6 25250335 25250376 -164029178 + AT_rich Low_complexity Low_complexity 1 41 0 1099 252 77 75 chr6 25250389 25251016 -164028538 - HAL1b LINE L1 -500 848 221 233 346 108 14 chr6 25251310 25251524 -164028030 - L2 LINE L2 -599 2715 2482 25 31 0 0 chr6 25251541 25251573 -164027981 + AT_rich Low_complexity Low_complexity 1 32 0 2469 56 0 7 chr6 25251575 25251878 -164027676 - AluY SINE Alu -10 301 1 567 290 84 22 chr6 25252051 25253123 -164026431 + L1M4 LINE L1 3564 4715 -1431 * 13585 158 13 16 chr6 25253117 25254322 -164025232 + L1P3 LINE L1 4 1210 -5251 189 0 0 0 chr6 25254322 25254343 -164025211 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13585 158 13 16 chr6 25254343 25256815 -164022739 + L1P3 LINE L1 1210 3733 -2728 3192 127 21 6 chr6 25256844 25257358 -164022196 - L1P LINE L1 -2055 4091 3570 2259 96 6 0 chr6 25257359 25257672 -164021882 + L1PA8A LINE L1 5803 6117 -14 207 0 0 0 chr6 25257672 25257695 -164021859 + (CA)n Simple_repeat Simple_repeat 2 24 0 414 352 54 39 chr6 25257697 25258103 -164021451 + L1M4 LINE L1 4711 5122 -1024 242 294 0 16 chr6 25258206 25258267 -164021287 + L1M LINE L1 5257 5317 -845 1951 150 0 13 chr6 25258267 25258567 -164020987 + AluSx SINE Alu 1 296 -16 242 294 0 16 chr6 25258567 25258631 -164020923 + L1M LINE L1 5317 5380 -782 2729 239 62 42 chr6 25258631 25259810 -164019744 - L1MDa LINE L1 -2343 4197 2996 608 162 0 48 chr6 25259846 25259951 -164019603 - FLAM_A SINE Alu -42 100 1 991 221 48 43 chr6 25260036 25260603 -164018951 - L1MDa LINE L1 -3658 2882 2316 * 22917 143 37 21 chr6 25260602 25261266 -164018288 - L1PA7 LINE L1 -5 6409 5757 2210 86 40 7 chr6 25261266 25261567 -164017987 - AluY SINE Alu 0 311 1 22917 143 37 21 chr6 25261567 25267234 -164012320 - L1PA7 LINE L1 -657 5757 2 27 29 0 0 chr6 25267286 25267320 -164012234 + AT_rich Low_complexity Low_complexity 1 34 0 654 174 96 0 chr6 25267375 25267490 -164012064 + FLAM_C SINE Alu 2 127 -16 280 357 94 13 chr6 25267786 25268010 -164011544 - MIR SINE MIR -14 248 7 29 47 0 0 chr6 25268125 25268168 -164011386 + AT_rich Low_complexity Low_complexity 1 43 0 1551 180 9 43 chr6 25268168 25268518 -164011036 - L1MA6 LINE L1 0 6300 5963 216 135 0 0 chr6 25269849 25269886 -164009668 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 224 196 0 54 chr6 25270330 25270386 -164009168 - L2 LINE L2 -5 3267 3215 32 57 0 0 chr6 25270646 25270699 -164008855 + AT_rich Low_complexity Low_complexity 1 53 0 2509 254 62 17 chr6 25272679 25273490 -164006064 - L1ME1 LINE L1 -5 6161 5315 3105 132 24 21 chr6 25273494 25274702 -164004852 + L1PA14 LINE L1 4775 6158 -3 734 199 27 63 chr6 25274756 25274977 -164004577 - L1ME1 LINE L1 -873 5273 5061 449 247 25 57 chr6 25275469 25275627 -164003927 + MER5A DNA MER1_type 7 159 -30 27 49 0 0 chr6 25276086 25276127 -164003427 + AT_rich Low_complexity Low_complexity 1 41 0 307 278 57 108 chr6 25277566 25277760 -164001794 - MER5A DNA MER1_type -5 184 1 202 290 16 0 chr6 25279568 25279630 -163999924 + CT-rich Low_complexity Low_complexity 1 63 0 181 116 23 23 chr6 25280691 25280734 -163998820 + (TA)n Simple_repeat Simple_repeat 2 44 0 2018 107 24 86 chr6 25281146 25281529 -163998025 - THE1C LTR MaLR -2 373 15 233 264 0 19 chr6 25281546 25281599 -163997955 - L2 LINE L2 -68 3204 3153 1567 96 45 0 chr6 25281700 25281920 -163997634 - MER30 DNA MER1_type 0 230 1 186 43 0 0 chr6 25282015 25282038 -163997516 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1072 251 183 9 chr6 25282619 25283041 -163996513 + MLT2B2 LTR ERVL 1 495 -20 451 298 79 65 chr6 25283247 25283600 -163995954 + MER20B DNA MER1_type 4 361 -422 419 85 0 0 chr6 25283609 25283668 -163995886 + MADE1 DNA Mariner 22 80 0 956 273 75 13 chr6 25283675 25284063 -163995491 + MER20B DNA MER1_type 371 782 -1 413 303 146 43 chr6 25284084 25284434 -163995120 - L2 LINE L2 -743 2571 2186 196 379 45 15 chr6 25284493 25284625 -163994929 - MIR SINE MIR -72 190 55 1828 222 60 25 chr6 25284750 25285103 -163994451 + LTR40b LTR ERVL 1 375 -87 2952 93 25 16 chr6 25285103 25285543 -163994011 + MLT2A1 LTR ERVL 1 444 0 1828 222 60 25 chr6 25285543 25285635 -163993919 + LTR40b LTR ERVL 375 462 0 661 307 39 79 chr6 25285649 25286137 -163993417 - L2 LINE L2 -147 3166 2619 297 75 0 0 chr6 25286220 25286260 -163993294 + (TTA)n Simple_repeat Simple_repeat 1 40 0 265 362 18 18 chr6 25288256 25288419 -163991135 - L2 LINE L2 -1903 1411 1249 264 311 38 30 chr6 25288477 25288609 -163990945 + MARNA DNA Mariner 415 547 -39 408 209 304 20 chr6 25288637 25288838 -163990716 + L1MD2 LINE L1 6088 6345 -14 25 65 0 0 chr6 25289725 25289771 -163989783 + AT_rich Low_complexity Low_complexity 1 46 0 1575 258 185 19 chr6 25290106 25290859 -163988695 + L2 LINE L2 2194 3069 -244 1153 268 69 26 chr6 25290966 25291470 -163988084 + L1ME2 LINE L1 5578 6103 -61 22 35 0 0 chr6 25291660 25291689 -163987865 + AT_rich Low_complexity Low_complexity 1 29 0 367 308 50 66 chr6 25291693 25292011 -163987543 + L1ME LINE L1 2851 3163 -2983 2876 6 0 0 chr6 25292544 25292855 -163986699 - AluYb8 SINE Alu -7 311 1 350 318 67 30 chr6 25292855 25293154 -163986400 + L1ME LINE L1 3863 4172 -1974 226 309 37 6 chr6 25293191 25293353 -163986201 + L1ME LINE L1 4242 4408 -1738 22 0 0 0 chr6 25293556 25293578 -163985976 + AT_rich Low_complexity Low_complexity 1 22 0 331 294 154 33 chr6 25293667 25293966 -163985588 + L1ME LINE L1 5411 5745 -417 3696 194 6 30 chr6 25294633 25295373 -163984181 + L1MB8 LINE L1 5388 6109 -69 2266 105 0 0 chr6 25295373 25295667 -163983887 - AluSx SINE Alu -18 294 1 3696 194 6 30 chr6 25295667 25295730 -163983824 + L1MB8 LINE L1 6109 6172 -6 2139 85 0 14 chr6 25296359 25296641 -163982913 + AluY SINE Alu 23 300 -11 1424 176 62 38 chr6 25297258 25297548 -163982006 - AluJo SINE Alu -15 297 1 1325 90 6 0 chr6 25297618 25297795 -163981759 - AluY SINE Alu -1 310 133 2345 96 0 3 chr6 25297795 25298107 -163981447 - AluY SINE Alu 0 311 1 1758 299 136 23 chr6 25298133 25299277 -163980277 - L2 LINE L2 0 3313 2032 296 229 16 10 chr6 25299515 25299716 -163979838 + (TA)n Simple_repeat Simple_repeat 1 202 0 2243 91 3 0 chr6 25299732 25300017 -163979537 - AluSp SINE Alu -26 287 2 236 186 70 0 chr6 25300838 25300924 -163978630 + (TA)n Simple_repeat Simple_repeat 1 92 0 22 109 0 0 chr6 25300949 25301041 -163978513 + AT_rich Low_complexity Low_complexity 1 92 0 336 199 28 50 chr6 25301062 25301243 -163978311 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 2738 78 93 5 chr6 25302104 25302514 -163977040 + LTR7 LTR ERV1 3 448 -2 243 0 0 0 chr6 25302613 25302640 -163976914 + (A)n Simple_repeat Simple_repeat 1 27 0 2525 84 0 0 chr6 25303140 25303450 -163976104 - AluSg SINE Alu 0 310 1 1794 208 20 20 chr6 25303634 25304042 -163975512 + L1MB4 LINE L1 5631 6038 -142 600 202 69 12 chr6 25304669 25304842 -163974712 - MER5A DNA MER1_type -6 183 1 618 127 18 9 chr6 25305158 25305268 -163974286 + L1MB4 LINE L1 6021 6131 -49 2146 108 7 0 chr6 25306186 25306473 -163973081 + AluSq SINE Alu 1 289 -24 203 0 0 36 chr6 25306477 25306505 -163973049 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2173 113 3 13 chr6 25306968 25307279 -163972275 - AluSp SINE Alu -5 308 1 204 97 0 0 chr6 25307795 25307826 -163971728 + (TG)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr6 25308428 25308452 -163971102 + (TATG)n Simple_repeat Simple_repeat 2 25 0 272 331 15 46 chr6 25308454 25308584 -163970970 - L2 LINE L2 -4 3309 3184 1437 249 82 15 chr6 25308614 25309153 -163970401 - MLT2F LTR ERVL -14 649 35 570 214 174 0 chr6 25309191 25309369 -163970185 + L1ME3A LINE L1 5956 6164 -6 290 344 94 56 chr6 25309595 25309891 -163969663 - L2 LINE L2 -429 2885 2578 548 267 68 0 chr6 25309891 25310052 -163969502 + MIR SINE MIR 1 172 -90 431 280 98 53 chr6 25310491 25310716 -163968838 + L1MC4a LINE L1 5814 6048 -1760 516 366 48 5 chr6 25311171 25311545 -163968009 + L1MC4a LINE L1 6414 6803 -1005 352 144 122 22 chr6 25311556 25311646 -163967908 + L1ME2 LINE L1 5631 5729 -435 404 242 109 8 chr6 25311694 25311822 -163967732 - L1ME2 LINE L1 -274 5890 5750 732 264 43 4 chr6 25311871 25312102 -163967452 + L1ME2 LINE L1 5912 6151 -13 776 225 38 19 chr6 25312106 25312315 -163967239 + L1MC4a LINE L1 6345 6557 -1251 627 312 78 12 chr6 25312489 25313038 -163966516 + MLT2F LTR ERVL 30 661 -2 279 310 39 32 chr6 25313039 25313194 -163966360 + HERVL-F LTR ERVL 4 159 -5495 1620 173 15 7 chr6 25313211 25313514 -163966040 - AluJo SINE Alu 0 313 9 426 344 70 36 chr6 25313585 25313943 -163965611 + HERVL-F LTR ERVL 282 651 -5113 1354 330 19 29 chr6 25313964 25314610 -163964944 + HERVL-F LTR ERVL 778 1416 -4348 2958 260 44 17 chr6 25314618 25314726 -163964828 + HERVL-F LTR ERVL 1624 1728 -4036 2164 176 102 11 chr6 25314726 25315187 -163964367 + MLT1D LTR MaLR 3 505 0 2958 260 44 17 chr6 25315187 25316010 -163963544 + HERVL-F LTR ERVL 1728 2622 -3142 800 323 170 16 chr6 25316013 25316571 -163962983 + MLT2F LTR ERVL 14 657 -6 414 0 0 0 chr6 25316572 25316618 -163962936 + (TG)n Simple_repeat Simple_repeat 1 46 0 3413 231 117 12 chr6 25316619 25317821 -163961733 + L1MC4 LINE L1 6618 8036 -6 1253 274 154 20 chr6 25317849 25318350 -163961204 - MLT1G1 LTR MaLR -27 568 1 942 90 0 0 chr6 25318380 25318514 -163961040 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 337 315 45 48 chr6 25318774 25319152 -163960402 + L1MC4 LINE L1 7098 7474 -568 510 92 0 13 chr6 25319931 25319943 -163959611 + LTR3b LTR ERVK 426 437 -63 2006 153 36 59 chr6 25319943 25320107 -163959447 + LTR3 LTR ERVK 1 167 -262 2215 113 3 0 chr6 25320107 25320408 -163959146 - AluSp SINE Alu -11 302 1 2006 153 36 59 chr6 25320408 25320682 -163958872 + LTR3 LTR ERVK 167 429 0 510 92 0 13 chr6 25320682 25320745 -163958809 + LTR3b LTR ERVK 437 500 0 303 300 0 0 chr6 25320745 25320825 -163958729 - L2 LINE L2 -948 2366 2287 246 62 0 0 chr6 25320825 25320857 -163958697 + (TAA)n Simple_repeat Simple_repeat 3 34 0 325 280 189 29 chr6 25321401 25321576 -163957978 - MIR SINE MIR -13 249 47 201 163 0 0 chr6 25322501 25322550 -163957004 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 33 33 0 chr6 25324514 25324544 -163955010 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr6 25325300 25325322 -163954232 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr6 25325556 25325579 -163953975 + (TG)n Simple_repeat Simple_repeat 2 24 0 252 208 0 39 chr6 25325684 25325761 -163953793 - L1M LINE L1 -745 5429 5356 266 241 52 0 chr6 25325796 25325854 -163953700 - L2 LINE L2 -68 3245 3185 21 57 0 0 chr6 25325888 25325923 -163953631 + AT_rich Low_complexity Low_complexity 1 35 0 2867 9 0 6 chr6 25326057 25326377 -163953177 - AluYb8 SINE Alu 0 318 1 2124 196 70 29 chr6 25329669 25330215 -163949339 + L1MC3 LINE L1 6672 7239 -546 635 192 20 0 chr6 25330218 25330364 -163949190 - L1MC3 LINE L1 -188 7597 7449 2689 107 0 3 chr6 25330996 25331361 -163948193 + THE1B LTR MaLR 1 364 0 22 80 0 0 chr6 25331365 25331415 -163948139 + AT_rich Low_complexity Low_complexity 1 50 0 43264 42 4 8 chr6 25331470 25333332 -163946222 + L1PA4 LINE L1 4 1872 -4283 3304 71 5 12 chr6 25333332 25333756 -163945798 - SVA Other Other -1 1385 965 43264 42 4 8 chr6 25333756 25338067 -163941487 + L1PA4 LINE L1 1872 6150 -5 429 119 0 0 chr6 25338067 25338134 -163941420 + AluS SINE Alu 230 296 -13 281 267 0 0 chr6 25438291 25438351 -163841203 + L1M4 LINE L1 2703 2762 -3384 224 286 11 0 chr6 25438369 25438460 -163841094 + (TA)n Simple_repeat Simple_repeat 2 93 0 377 277 75 21 chr6 25438486 25438674 -163840880 + L2 LINE L2 3116 3313 0 1862 126 43 98 chr6 25438910 25439307 -163840247 - THE1C LTR MaLR 0 375 1 216 156 44 0 chr6 25440653 25440698 -163838856 + T-rich Low_complexity Low_complexity 3 49 0 5864 77 3 73 chr6 25441266 25442154 -163837400 + LTR12 LTR ERV1 1 826 0 2267 103 0 0 chr6 25442726 25443017 -163836537 - AluY SINE Alu -20 291 1 244 229 69 84 chr6 25443120 25443251 -163836303 - MIR SINE MIR -10 252 124 23 0 0 0 chr6 25445674 25445697 -163833857 + AT_rich Low_complexity Low_complexity 1 23 0 2870 10 0 0 chr6 25445999 25446310 -163833244 - AluY SINE Alu 0 311 1 3471 136 6 11 chr6 25446337 25446865 -163832689 + MER61E LTR ERV1 1 525 -44 204 284 45 15 chr6 25447070 25447137 -163832417 - MIR3 SINE MIR -43 165 97 267 283 85 69 chr6 25447445 25447692 -163831862 + L3b LINE CR1 1129 1379 -204 1514 206 75 51 chr6 25448550 25449041 -163830513 - MLT1D LTR MaLR -2 503 1 183 156 0 0 chr6 25449077 25449109 -163830445 + (CA)n Simple_repeat Simple_repeat 1 32 0 210 143 0 0 chr6 25452003 25452038 -163827516 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 25452134 25452162 -163827392 + AT_rich Low_complexity Low_complexity 1 28 0 291 239 125 0 chr6 25452190 25452278 -163827276 - MIR SINE MIR -111 151 53 885 136 14 0 chr6 25453852 25453999 -163825555 + L1MA2 LINE L1 6128 6276 -28 21 0 0 0 chr6 25454041 25454062 -163825492 + AT_rich Low_complexity Low_complexity 1 21 0 1801 291 55 45 chr6 25455493 25456354 -163823200 - L2 LINE L2 -2439 875 7 191 103 26 0 chr6 25457667 25457706 -163821848 + A-rich Low_complexity Low_complexity 2 41 0 207 100 0 0 chr6 25458030 25458060 -163821494 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 449 298 13 32 chr6 25458060 25458207 -163821347 - L2 LINE L2 -13 3300 3155 355 312 123 78 chr6 25458330 25458450 -163821104 - L2 LINE L2 -351 2963 2850 988 191 42 114 chr6 25458450 25458853 -163820701 + MLT1A2 LTR MaLR 1 374 0 355 312 123 78 chr6 25458853 25459542 -163820012 - L2 LINE L2 -464 2850 2117 345 47 0 0 chr6 25459604 25459647 -163819907 + (CA)n Simple_repeat Simple_repeat 1 43 0 185 312 54 107 chr6 25460317 25460634 -163818920 + L2 LINE L2 2920 3219 -53 2339 101 23 49 chr6 25460672 25461057 -163818497 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 25461209 25461231 -163818323 + AT_rich Low_complexity Low_complexity 1 22 0 369 305 88 62 chr6 25461245 25461599 -163817955 - L2 LINE L2 -1 3312 2950 282 320 63 93 chr6 25461794 25462222 -163817332 - L2 LINE L2 -38 3234 2820 527 321 50 23 chr6 25463770 25463991 -163815563 + MIR SINE MIR 33 259 -3 180 252 103 56 chr6 25464514 25464621 -163814933 - L2 LINE L2 -933 2381 2270 838 153 0 0 chr6 25465159 25465290 -163814264 - FLAM_A SINE Alu -2 131 1 180 0 0 0 chr6 25467091 25467111 -163812443 + (A)n Simple_repeat Simple_repeat 1 20 0 253 314 14 0 chr6 25467112 25467182 -163812372 - L2 LINE L2 -9 3304 3234 203 246 261 0 chr6 25467219 25467288 -163812266 - L2 LINE L2 -39 3274 3188 2238 91 0 58 chr6 25468179 25468509 -163811045 + AluY SINE Alu 1 311 0 559 307 83 32 chr6 25468767 25468985 -163810569 + MIR SINE MIR 8 236 -26 3011 114 14 0 chr6 25469004 25469450 -163810104 + L1PA15 LINE L1 5708 6159 -6 874 146 8 0 chr6 25469706 25469836 -163809718 - FLAM_C SINE Alu -12 131 1 870 219 61 35 chr6 25470892 25471120 -163808434 + MLT1F1 LTR MaLR 1 234 -333 1452 260 81 35 chr6 25471280 25471846 -163807708 + MLT1E LTR MaLR 1 592 -1 848 196 6 37 chr6 25471849 25472012 -163807542 + MLT1F1 LTR MaLR 307 464 -103 1474 243 31 52 chr6 25472036 25472518 -163807036 + MER74B LTR ERVL 81 552 -70 1615 90 5 31 chr6 25472559 25472782 -163806772 + AluY SINE Alu 82 298 -13 482 196 18 27 chr6 25472804 25472916 -163806638 + MLT1F1 LTR MaLR 457 567 0 356 336 0 15 chr6 25472999 25473133 -163806421 + MIR SINE MIR 20 151 -111 22 35 0 0 chr6 25473931 25473960 -163805594 + AT_rich Low_complexity Low_complexity 1 29 0 2268 263 80 5 chr6 25474035 25474858 -163804696 - L1M4 LINE L1 -1010 5136 4252 2357 102 30 19 chr6 25476247 25476618 -163802936 - THE1C LTR MaLR 0 375 1 261 327 129 0 chr6 25479407 25479508 -163800046 + MIR SINE MIR 51 164 -98 1194 278 50 45 chr6 25479574 25480234 -163799320 + L2 LINE L2 2657 3311 -2 1809 165 49 19 chr6 25481258 25481891 -163797663 - MER44D DNA MER2_type -2 603 1 191 324 124 29 chr6 25482017 25482122 -163797432 - L2 LINE L2 -22 3250 3136 2448 85 0 0 chr6 25482211 25482517 -163797037 + AluSc SINE Alu 1 306 -3 386 300 131 8 chr6 25483122 25483252 -163796302 + L2 LINE L2 3168 3313 0 266 333 19 19 chr6 25483780 25483885 -163795669 + L2 LINE L2 3168 3272 0 2043 206 31 53 chr6 25484995 25485506 -163794048 - MLT1F LTR MaLR 0 542 43 781 223 68 7 chr6 25485620 25485867 -163793687 + MLT2B1 LTR ERVL 1 268 -247 22 0 0 0 chr6 25487157 25487179 -163792375 + AT_rich Low_complexity Low_complexity 1 22 0 1714 147 23 0 chr6 25487272 25487531 -163792023 + AluSx SINE Alu 12 276 -36 187 219 0 0 chr6 25487891 25487932 -163791622 - MIR SINE MIR -110 152 112 2218 197 160 59 chr6 25488333 25489078 -163790476 + LTR1B LTR ERV1 1 820 -6 251 346 78 20 chr6 25489933 25490086 -163789468 + L2 LINE L2 3101 3262 -10 212 100 25 0 chr6 25492545 25492585 -163786969 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 290 315 27 36 chr6 25492781 25492892 -163786662 - L2 LINE L2 -18 3254 3145 310 380 76 9 chr6 25492946 25493170 -163786384 - L2 LINE L2 -339 2975 2737 2367 83 0 7 chr6 25493616 25493916 -163785638 + AluSc SINE Alu 1 298 -11 303 326 46 29 chr6 25495027 25495202 -163784352 + L3 LINE CR1 1195 1372 -205 2992 174 20 43 chr6 25498077 25498275 -163781279 - L1 LINE L1 -1346 4800 4599 2535 64 0 3 chr6 25498275 25498587 -163780967 - AluY SINE Alu 0 311 1 2992 174 20 43 chr6 25498587 25499087 -163780467 - L1 LINE L1 -1547 4599 4118 201 333 0 0 chr6 25499575 25499635 -163779919 - L2 LINE L2 -4 3309 3250 221 220 20 0 chr6 25499799 25499849 -163779705 + (TA)n Simple_repeat Simple_repeat 1 51 0 872 71 31 8 chr6 25500852 25500979 -163778575 - L1PA7 LINE L1 -2 6152 6023 1794 146 21 41 chr6 25501446 25501795 -163777759 + MLT1B LTR MaLR 1 344 -52 275 105 0 35 chr6 25501799 25501856 -163777698 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 349 75 88 19 chr6 25501864 25502024 -163777530 + (TA)n Simple_repeat Simple_repeat 1 171 0 298 36 72 66 chr6 25502037 25502204 -163777350 + (TA)n Simple_repeat Simple_repeat 2 169 0 389 109 44 77 chr6 25502205 25502461 -163777093 + (CTATA)n Simple_repeat Simple_repeat 1 247 0 43373 44 4 0 chr6 25504644 25510773 -163768781 - L1PA4 LINE L1 -6 6149 3 21 0 0 0 chr6 25510789 25510810 -163768744 + AT_rich Low_complexity Low_complexity 1 21 0 451 253 172 0 chr6 25511293 25511467 -163768087 - MLT1J1 LTR MaLR -234 212 9 293 68 23 0 chr6 25511602 25511646 -163767908 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 201 315 14 0 chr6 25511779 25511852 -163767702 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 1238 131 10 0 chr6 25511889 25512087 -163767467 + MER2 DNA MER2_type 1 200 -145 247 225 0 99 chr6 25512130 25512201 -163767353 + MER2 DNA MER2_type 278 341 -4 2047 300 40 36 chr6 25512273 25513401 -163766153 + L2 LINE L2 2175 3309 -4 207 194 0 0 chr6 25515090 25515126 -163764428 + MIR SINE MIR 156 191 -71 1955 125 21 0 chr6 25515189 25515468 -163764086 + AluSx SINE Alu 1 285 -27 355 353 15 8 chr6 25515602 25515735 -163763819 - L3 LINE CR1 -54 1523 1390 462 314 71 16 chr6 25515795 25516047 -163763507 + L2 LINE L2 1839 2104 -1210 27 49 0 0 chr6 25516221 25516262 -163763292 + AT_rich Low_complexity Low_complexity 1 41 0 378 310 39 47 chr6 25517762 25518017 -163761537 - L1MC4 LINE L1 -1 8041 7789 2265 103 0 38 chr6 25518080 25518400 -163761154 - AluSg SINE Alu -2 308 1 24 0 0 0 chr6 25518408 25518432 -163761122 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 82 55 chr6 25518436 25518766 -163760788 - L1MC4 LINE L1 -491 7551 7213 1424 157 49 66 chr6 25518800 25519086 -163760468 + AluJo SINE Alu 2 282 -30 354 98 0 0 chr6 25519093 25519144 -163760410 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 25 31 0 0 chr6 25519174 25519206 -163760348 + AT_rich Low_complexity Low_complexity 1 32 0 1987 152 3 0 chr6 25520545 25520842 -163758712 + AluSx SINE Alu 1 298 -14 5678 129 22 8 chr6 25520861 25522729 -163756825 - L1PA16 LINE L1 -9 6157 4270 1082 258 119 76 chr6 25525626 25526191 -163753363 - MLT1G1 LTR MaLR -2 593 5 218 203 14 95 chr6 25526195 25526269 -163753285 - MIR SINE MIR -130 132 65 3222 82 30 7 chr6 25526338 25526778 -163752776 + MLT2A2 LTR ERVL 2 451 -2 1785 234 98 57 chr6 25527868 25528647 -163750907 - L1ME2 LINE L1 -19 6145 5335 1309 229 45 63 chr6 25528647 25529212 -163750342 - MLT1D LTR MaLR -1 496 1 1018 266 96 24 chr6 25529253 25529880 -163749674 - L1ME2 LINE L1 -985 5161 4490 * 1088 262 27 40 chr6 25529877 25530354 -163749200 - L1ME2 LINE L1 -2060 4086 3616 349 248 73 41 chr6 25530386 25530604 -163748950 - L1ME2 LINE L1 -3069 3077 2853 426 180 174 23 chr6 25530733 25530905 -163748649 - MER33 DNA MER1_type -115 209 12 1173 65 0 0 chr6 25531199 25531352 -163748202 - AluY SINE Alu -5 306 154 2142 166 35 39 chr6 25532162 25532359 -163747195 + Tigger2a DNA MER2_type 2 198 -2510 1660 162 32 23 chr6 25532359 25532668 -163746886 - AluJb SINE Alu 0 312 1 2142 166 35 39 chr6 25532668 25532905 -163746649 + Tigger2a DNA MER2_type 198 434 0 193 244 81 70 chr6 25533012 25533177 -163746377 + MIR SINE MIR 45 212 -50 23 0 0 0 chr6 25533445 25533468 -163746086 + AT_rich Low_complexity Low_complexity 1 23 0 183 235 0 0 chr6 25533477 25533528 -163746026 + (TA)n Simple_repeat Simple_repeat 1 51 0 250 214 24 0 chr6 25534663 25534747 -163744807 + (TA)n Simple_repeat Simple_repeat 1 86 0 686 309 44 12 chr6 25535294 25535546 -163744008 - MIR SINE MIR 0 262 3 301 322 46 0 chr6 25535961 25536048 -163743506 + L2 LINE L2 3170 3260 -12 217 0 61 0 chr6 25536171 25536204 -163743350 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1704 150 28 7 chr6 25536212 25536498 -163743056 + AluJb SINE Alu 1 292 -20 1344 255 101 17 chr6 25537821 25538287 -163741267 + MLT1D LTR MaLR 1 505 0 183 80 0 0 chr6 25538428 25538453 -163741101 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr6 25538892 25538916 -163740638 + AT_rich Low_complexity Low_complexity 1 24 0 1123 203 21 0 chr6 25538980 25539221 -163740333 - Tigger6a DNA MER2_type 0 1083 838 623 208 0 0 chr6 25539229 25539349 -163740205 + AluJo SINE Alu 1 120 -192 641 195 16 20 chr6 25539349 25539805 -163739749 + GA-rich Low_complexity Low_complexity 1 454 0 664 218 170 0 chr6 25539807 25539954 -163739600 + AluJo SINE Alu 129 300 -12 3440 213 24 33 chr6 25539958 25540799 -163738755 - Tigger6a DNA MER2_type -250 833 1 22 0 0 0 chr6 25541721 25541743 -163737811 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr6 25541978 25542044 -163737510 + AT_rich Low_complexity Low_complexity 1 66 0 401 144 11 22 chr6 25542061 25542151 -163737403 - L1MA6 LINE L1 -5 6295 6207 289 339 85 21 chr6 25543021 25543257 -163736297 - MIR SINE MIR 0 262 12 1031 153 23 0 chr6 25544472 25544648 -163734906 - L1MB1 LINE L1 -330 5838 5659 692 158 0 0 chr6 25544650 25544764 -163734790 + L1MB1 LINE L1 5816 5929 -239 2238 126 14 6 chr6 25544778 25545142 -163734412 - L1PB1 LINE L1 -1 6150 5784 214 200 0 0 chr6 25545143 25545183 -163734371 + (TA)n Simple_repeat Simple_repeat 2 41 0 275 284 23 0 chr6 25545183 25545271 -163734283 + L1MC4 LINE L1 6614 6703 -1339 244 260 0 62 chr6 25545293 25545389 -163734165 + L1MC4 LINE L1 6614 6703 -1339 * 279 250 0 22 chr6 25545341 25545433 -163734121 - L1MC4 LINE L1 -1339 6703 6614 227 271 0 62 chr6 25545381 25545477 -163734077 + L1MC4 LINE L1 6614 6703 -1339 * 232 289 11 22 chr6 25545450 25545540 -163734014 - L1MC4 LINE L1 -1340 6702 6614 185 309 9 45 chr6 25545682 25545792 -163733762 - L2 LINE L2 -862 2452 2347 180 0 0 0 chr6 25546382 25546402 -163733152 + (A)n Simple_repeat Simple_repeat 1 20 0 2111 108 7 0 chr6 25546637 25546915 -163732639 + AluSx SINE Alu 1 280 -32 258 32 0 0 chr6 25546915 25546946 -163732608 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 207 0 0 0 chr6 25547282 25547305 -163732249 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 272 293 55 67 chr6 25547624 25547788 -163731766 - MIR SINE MIR -81 181 20 360 0 0 0 chr6 25547876 25547916 -163731638 + (CA)n Simple_repeat Simple_repeat 2 41 0 1079 132 17 31 chr6 25548497 25548714 -163730840 - MLT1C LTR MaLR 0 467 197 24 0 0 0 chr6 25550095 25550119 -163729435 + AT_rich Low_complexity Low_complexity 1 24 0 245 29 29 0 chr6 25550593 25550627 -163728927 + (TA)n Simple_repeat Simple_repeat 1 35 0 198 328 109 68 chr6 25550823 25551015 -163728539 - L3b LINE CR1 -17 1566 1367 807 220 16 21 chr6 25552979 25553170 -163726384 + MER97c DNA MER1_type? 1 190 -900 23 0 0 0 chr6 25553777 25553800 -163725754 + AT_rich Low_complexity Low_complexity 1 23 0 455 323 35 39 chr6 25553863 25554092 -163725462 + MIR SINE MIR 18 245 -17 202 303 0 34 chr6 25554638 25554727 -163724827 + (TTGGGG)n Simple_repeat Simple_repeat 2 87 0 2111 113 26 3 chr6 25556460 25556762 -163722792 - AluSx SINE Alu -3 309 1 180 0 0 0 chr6 25557277 25557297 -163722257 + (A)n Simple_repeat Simple_repeat 1 20 0 314 329 64 66 chr6 25557298 25557555 -163721999 - L2 LINE L2 -303 3010 2757 633 254 77 0 chr6 25557637 25557818 -163721736 - MER58A DNA MER1_type -29 195 1 519 235 26 91 chr6 25557963 25558193 -163721361 + L1M4 LINE L1 3926 4140 -2006 2606 243 125 35 chr6 25558357 25559519 -163720035 + L1M4 LINE L1 3552 4817 -1329 1516 304 48 35 chr6 25559573 25560444 -163719110 + L2 LINE L2 2416 3313 0 891 268 92 42 chr6 25561433 25561813 -163717741 + L3b LINE CR1 1104 1502 -81 30904 98 9 44 chr6 25564960 25568219 -163711335 + L1PA7 LINE L1 371 3486 -2983 397 55 36 0 chr6 25568219 25568274 -163711280 + Alu SINE Alu 242 298 -3 30904 98 9 44 chr6 25568274 25571154 -163708400 + L1PA7 LINE L1 3486 6465 -4 243 335 40 29 chr6 25571161 25571334 -163708220 + L3b LINE CR1 1177 1351 -232 9160 201 31 21 chr6 25572031 25572738 -163706816 - L1PA16 LINE L1 -1 6868 6169 1434 193 20 27 chr6 25572738 25573068 -163706486 - AluJb SINE Alu 0 312 1 9160 201 31 21 chr6 25573068 25575046 -163704508 - L1PA16 LINE L1 -700 6169 4133 2212 140 31 0 chr6 25575046 25575397 -163704157 + THE1B LTR MaLR 3 364 0 9160 201 31 21 chr6 25575397 25576003 -163703551 - L1PA16 LINE L1 -2736 4133 3534 6892 190 23 11 chr6 25576009 25577911 -163701643 - L1PA16 LINE L1 -5172 1677 90 2198 127 0 0 chr6 25577911 25578210 -163701344 + AluSx SINE Alu 1 299 -13 6892 190 23 11 chr6 25578210 25578301 -163701253 - L1PA16 LINE L1 -6759 90 2 51 42 0 0 chr6 25578584 25578656 -163700898 + AT_rich Low_complexity Low_complexity 1 72 0 24 32 0 0 chr6 25578806 25578837 -163700717 + AT_rich Low_complexity Low_complexity 1 31 0 256 292 193 12 chr6 25579235 25579406 -163700148 + MIR SINE MIR 32 233 -29 723 310 76 17 chr6 25579477 25579899 -163699655 + LTR16A LTR ERVL 2 448 -2 23 33 0 0 chr6 25581260 25581290 -163698264 + AT_rich Low_complexity Low_complexity 1 30 0 1591 306 113 7 chr6 25581463 25582179 -163697375 + L2 LINE L2 2258 3064 -249 322 251 6 108 chr6 25582179 25582346 -163697208 - MLT1J1 LTR MaLR 0 446 297 344 255 144 80 chr6 25582382 25582570 -163696984 + MER58C DNA MER1_type 1 200 -15 315 273 78 0 chr6 25582697 25582774 -163696780 - MER58 DNA MER1_type -2337 83 1 186 133 0 0 chr6 25582811 25582841 -163696713 + (T)n Simple_repeat Simple_repeat 1 30 0 339 150 0 0 chr6 25582841 25582901 -163696653 + (TCCC)n Simple_repeat Simple_repeat 3 62 0 1815 129 48 7 chr6 25582901 25583196 -163696358 - AluSx SINE Alu -5 307 1 294 346 49 25 chr6 25584141 25584303 -163695251 - L2 LINE L2 -1 3271 3106 220 193 147 55 chr6 25584361 25584470 -163695084 + MIR SINE MIR 51 169 -93 217 154 26 0 chr6 25584478 25584517 -163695037 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 1941 119 63 0 chr6 25585454 25585740 -163693814 + AluSq SINE Alu 1 304 -9 2185 66 16 53 chr6 25585950 25586270 -163693284 + AluSc SINE Alu 1 308 -1 1934 98 4 23 chr6 25586508 25586773 -163692781 - AluSq SINE Alu -53 260 1 207 228 18 18 chr6 25587337 25587394 -163692160 + GA-rich Low_complexity Low_complexity 5 61 0 2427 54 0 7 chr6 25587720 25588014 -163691540 + AluY SINE Alu 1 292 -19 310 394 28 6 chr6 25588504 25588684 -163690870 - MIR3 SINE MIR -21 187 4 201 302 0 0 chr6 25589146 25589199 -163690355 + GA-rich Low_complexity Low_complexity 2 54 0 237 108 0 0 chr6 25590943 25590980 -163688574 + (TC)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr6 25590985 25591005 -163688549 + (CA)n Simple_repeat Simple_repeat 1 20 0 333 68 0 0 chr6 25591237 25591281 -163688273 + (CA)n Simple_repeat Simple_repeat 1 44 0 295 171 61 12 chr6 25591307 25591389 -163688165 + L1ME4a LINE L1 6023 6108 -13 2157 107 19 16 chr6 25592145 25592454 -163687100 - AluSx SINE Alu -2 310 1 25 51 0 0 chr6 25593534 25593573 -163685981 + AT_rich Low_complexity Low_complexity 1 39 0 373 276 110 7 chr6 25594976 25595121 -163684433 + L2 LINE L2 3154 3313 0 183 315 82 0 chr6 25596879 25596952 -163682602 + L2 LINE L2 3190 3268 -4 221 163 0 0 chr6 25597251 25597294 -163682260 + T-rich Low_complexity Low_complexity 1 43 0 1296 176 4 0 chr6 25597409 25597648 -163681906 - L1MB1 LINE L1 -3 6165 5926 2122 97 0 7 chr6 25597648 25597947 -163681607 + L1P5 LINE L1 5495 5791 -360 252 297 0 22 chr6 25597962 25598053 -163681501 + L1MC4 LINE L1 6614 6702 -1340 245 301 24 0 chr6 25598022 25598105 -163681449 - L1MC4 LINE L1 -1341 6701 6617 * 279 250 0 22 chr6 25598080 25598172 -163681382 + L1MC4 LINE L1 6614 6703 -1339 244 260 0 62 chr6 25598124 25598220 -163681334 - L1MC4 LINE L1 -1339 6703 6614 * 275 284 23 0 chr6 25598242 25598330 -163681224 - L1MC4 LINE L1 -1339 6703 6614 2251 124 14 6 chr6 25598369 25598733 -163680821 + L1PB1 LINE L1 5784 6150 -1 692 158 0 0 chr6 25598747 25598861 -163680693 - L1MB1 LINE L1 -239 5929 5816 1031 153 23 0 chr6 25598863 25599039 -163680515 + L1MB1 LINE L1 5659 5838 -330 289 339 85 21 chr6 25600254 25600490 -163679064 + MIR SINE MIR 12 262 0 401 144 11 22 chr6 25601384 25601474 -163678080 + L1MA6 LINE L1 6207 6295 -5 24 91 0 0 chr6 25601491 25601557 -163677997 + AT_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr6 25601792 25601814 -163677740 + AT_rich Low_complexity Low_complexity 1 22 0 3372 213 24 37 chr6 25602736 25603580 -163675974 + Tigger6a DNA MER2_type 1 833 -250 664 218 170 0 chr6 25603584 25603731 -163675823 - AluJo SINE Alu -12 300 129 603 170 24 32 chr6 25603732 25604185 -163675369 + CT-rich Low_complexity Low_complexity 1 449 0 623 208 0 0 chr6 25604185 25604305 -163675249 - AluJo SINE Alu -192 120 1 1109 208 21 0 chr6 25604313 25604554 -163675000 + Tigger6a DNA MER2_type 838 1083 0 24 0 0 0 chr6 25604618 25604642 -163674912 + AT_rich Low_complexity Low_complexity 1 24 0 183 80 0 0 chr6 25605081 25605106 -163674448 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1334 258 99 15 chr6 25605247 25605713 -163673841 - MLT1D LTR MaLR 0 505 1 243 335 40 29 chr6 25607408 25607581 -163671973 - L3b LINE CR1 -232 1351 1177 30889 100 11 45 chr6 25607581 25610466 -163669088 - L1PA8 LINE L1 0 6487 3503 427 48 32 0 chr6 25610466 25610528 -163669026 - AluY SINE Alu -6 306 243 30889 100 11 45 chr6 25610528 25613781 -163665773 - L1PA8 LINE L1 -2984 3503 371 891 268 92 42 chr6 25616927 25617307 -163662247 - L3b LINE CR1 -81 1502 1104 1529 303 48 35 chr6 25618296 25619167 -163660387 - L2 LINE L2 0 3313 2416 1776 254 72 59 chr6 25619221 25620382 -163659172 - L1 LINE L1 -1329 4817 3552 477 252 50 64 chr6 25620546 25620764 -163658790 - L1M4 LINE L1 -2006 4140 3926 621 260 77 0 chr6 25620909 25621090 -163658464 + MER58A DNA MER1_type 1 195 -29 314 329 64 66 chr6 25621172 25621429 -163658125 + L2 LINE L2 2757 3010 -303 216 0 0 0 chr6 25621430 25621454 -163658100 + (T)n Simple_repeat Simple_repeat 1 24 0 2095 113 27 3 chr6 25621970 25622270 -163657284 + AluSx SINE Alu 1 307 -5 205 247 41 14 chr6 25623808 25623881 -163655673 + (CATA)n Simple_repeat Simple_repeat 2 76 0 202 303 0 34 chr6 25624003 25624092 -163655462 + (CCCCAA)n Simple_repeat Simple_repeat 2 87 0 463 323 35 39 chr6 25624638 25624867 -163654687 - MIR SINE MIR -17 245 18 23 0 0 0 chr6 25624930 25624953 -163654601 + AT_rich Low_complexity Low_complexity 1 23 0 810 220 16 21 chr6 25625560 25625751 -163653803 - MER97c DNA MER1_type? -900 190 1 245 29 29 0 chr6 25628101 25628135 -163651419 + (TA)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr6 25628613 25628633 -163650921 + (A)n Simple_repeat Simple_repeat 1 20 0 1065 132 17 31 chr6 25630015 25630232 -163649322 + MLT1C LTR MaLR 197 467 0 342 0 0 0 chr6 25630813 25630851 -163648703 + (TG)n Simple_repeat Simple_repeat 2 39 0 265 326 30 59 chr6 25630968 25631103 -163648451 + MIR SINE MIR 51 181 -81 207 0 0 0 chr6 25631422 25631445 -163648109 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 258 32 0 0 chr6 25631781 25631812 -163647742 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2052 112 7 0 chr6 25631812 25632090 -163647464 - AluSx SINE Alu -32 280 1 216 0 0 0 chr6 25632325 25632349 -163647205 + (T)n Simple_repeat Simple_repeat 1 24 0 799 289 125 49 chr6 25632939 25633793 -163645761 + L2 LINE L2 2347 3251 -62 1789 170 0 3 chr6 25636098 25636387 -163643167 - AluJb SINE Alu -24 288 1 1940 191 45 16 chr6 25639461 25639902 -163639652 - L1 LINE L1 -1592 4554 4101 621 213 0 39 chr6 25639906 25640061 -163639493 - L1 LINE L1 -2133 4013 3865 213 260 65 98 chr6 25640900 25641023 -163638531 - MIR3 SINE MIR -26 182 64 1181 305 11 44 chr6 25641038 25641559 -163637995 + L1MC3 LINE L1 3 506 -5539 474 280 13 27 chr6 25641665 25641815 -163637739 + L1MC3 LINE L1 570 717 -5328 7678 241 65 21 chr6 25641825 25645268 -163634286 + L1MC3 LINE L1 2949 5821 -743 2857 179 67 123 chr6 25645267 25646320 -163633234 + L1MC3 LINE L1 7162 8155 -48 * 186 43 0 0 chr6 25647749 25647772 -163631782 + (GAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 25648512 25648533 -163631021 + AT_rich Low_complexity Low_complexity 1 21 0 232 353 44 73 chr6 25649668 25649804 -163629750 + MIR SINE MIR 20 151 -111 676 283 49 83 chr6 25651562 25651972 -163627582 + L2 LINE L2 2817 3212 -101 2315 264 50 14 chr6 25651977 25652224 -163627330 + L1M4 LINE L1 3038 3274 -2872 840 10 0 0 chr6 25652224 25652322 -163627232 + L1PA2 LINE L1 6058 6155 0 2315 264 50 14 chr6 25652322 25652945 -163626609 + L1M4 LINE L1 3274 3940 -2206 183 204 0 0 chr6 25652992 25653041 -163626513 + (AGTTG)n Simple_repeat Simple_repeat 5 53 0 2171 91 0 7 chr6 25653160 25653473 -163626081 - AluSq SINE Alu 0 314 4 249 139 28 14 chr6 25653665 25653737 -163625817 + (TA)n Simple_repeat Simple_repeat 1 73 0 839 241 18 5 chr6 25653744 25653968 -163625586 + L1M4 LINE L1 3964 4190 -1956 1123 306 46 22 chr6 25653981 25654625 -163624929 + L1MCb LINE L1 1476 2179 -4566 470 296 82 10 chr6 25655021 25655217 -163624337 - MLT1J1 LTR MaLR -13 433 224 256 213 16 0 chr6 25656220 25656281 -163623273 + (AATTG)n Simple_repeat Simple_repeat 4 65 0 190 231 88 55 chr6 25656814 25656905 -163622649 - MIR SINE MIR -5 257 164 1965 137 26 11 chr6 25656933 25657283 -163622271 + L1MA2 LINE L1 5942 6296 -8 1608 206 29 29 chr6 25657950 25658324 -163621230 + MLT1A2 LTR MaLR 1 374 0 439 280 68 39 chr6 25658577 25658856 -163620698 + MER96B DNA MER1_type? 131 417 0 644 264 77 40 chr6 25658955 25659254 -163620300 + L1M4 LINE L1 3528 3837 -2309 420 260 0 10 chr6 25659255 25659355 -163620199 + MLT1C LTR MaLR 369 467 0 3067 221 99 90 chr6 25659360 25660553 -163619001 + L1MC4a LINE L1 6604 7807 -1 283 312 0 11 chr6 25660658 25660751 -163618803 + CT-rich Low_complexity Low_complexity 4 95 0 903 131 0 0 chr6 25661365 25661495 -163618059 + AluJb SINE Alu 4 133 -179 831 201 6 17 chr6 25661530 25661704 -163617850 + AluJb SINE Alu 126 297 -15 220 286 57 38 chr6 25662420 25662525 -163617029 + L2 LINE L2 1843 1949 -1365 1352 243 30 35 chr6 25662690 25663094 -163616460 - MER74B LTR ERVL -10 612 211 328 170 0 0 chr6 25663133 25663186 -163616368 - MER74B LTR ERVL -569 53 1 285 395 32 16 chr6 25663277 25663530 -163616024 + L2 LINE L2 2292 2548 -766 233 29 0 29 chr6 25663823 25663858 -163615696 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 242 242 116 42 chr6 25664122 25664217 -163615337 + L2 LINE L2 3160 3261 -11 25 31 0 0 chr6 25665322 25665354 -163614200 + AT_rich Low_complexity Low_complexity 1 32 0 286 298 100 29 chr6 25665828 25666137 -163613417 + L1ME4a LINE L1 5578 5908 -213 3045 174 92 6 chr6 25666766 25666855 -163612699 + L1MB3 LINE L1 5476 5556 -627 2177 60 0 0 chr6 25666855 25667121 -163612433 + AluY SINE Alu 34 299 -12 3045 174 92 6 chr6 25667121 25667681 -163611873 + L1MB3 LINE L1 5556 6181 -2 269 302 108 52 chr6 25668155 25668367 -163611187 + MIR SINE MIR 8 231 -31 360 313 102 36 chr6 25668848 25669014 -163610540 + MIR3 SINE MIR 3 179 -29 493 287 52 11 chr6 25670166 25670340 -163609214 + MIR SINE MIR 11 191 -71 871 287 60 81 chr6 25670727 25671393 -163608161 + HAL1 LINE L1 622 1273 -1234 288 252 97 32 chr6 25671410 25671565 -163607989 + HAL1 LINE L1 1386 1550 -957 368 296 19 58 chr6 25671572 25671778 -163607776 + HAL1 LINE L1 1682 1879 -628 356 367 105 0 chr6 25671808 25672037 -163607517 + HAL1 LINE L1 1664 1916 -591 1031 277 178 30 chr6 25672114 25672886 -163606668 + HAL1b LINE L1 427 1312 -36 1583 113 0 0 chr6 25673184 25673396 -163606158 - AluSq SINE Alu -9 304 93 521 324 39 0 chr6 25674172 25674354 -163605200 + MIR SINE MIR 11 199 -63 239 347 32 40 chr6 25674541 25674665 -163604889 + MIR SINE MIR 19 141 -67 835 255 24 19 chr6 25676213 25676421 -163603133 - MER3 DNA MER1_type 0 209 1 1842 187 59 36 chr6 25676508 25676946 -163602608 + MLT1C LTR MaLR 5 452 -15 436 242 58 74 chr6 25677000 25677190 -163602364 - LTR33A LTR ERVL -52 471 285 453 282 132 38 chr6 25678038 25678251 -163601303 + MIR SINE MIR 13 245 -17 323 336 36 7 chr6 25678452 25678589 -163600965 - MIR SINE MIR -31 231 91 555 345 43 13 chr6 25678592 25678827 -163600727 + MIR SINE MIR 21 262 0 234 211 178 22 chr6 25678897 25678987 -163600567 - HSMAR2 DNA Mariner -573 729 626 249 284 134 0 chr6 25678987 25679054 -163600500 + L2 LINE L2 3170 3245 -27 352 310 62 0 chr6 25679701 25679814 -163599740 - MER94 DNA DNA -14 120 1 22 56 0 0 chr6 25680455 25680491 -163599063 + AT_rich Low_complexity Low_complexity 1 36 0 834 288 91 42 chr6 25681480 25681866 -163597688 + MLT1L LTR MaLR 1 405 -210 495 322 91 21 chr6 25681993 25682235 -163597319 + L2 LINE L2 2719 2977 -337 12931 141 53 43 chr6 25682363 25684512 -163595042 - Tigger1 DNA MER2_type -3 2415 238 1723 153 84 0 chr6 25684512 25684787 -163594767 + AluSq SINE Alu 1 298 -15 12931 141 53 43 chr6 25684787 25685003 -163594551 - Tigger1 DNA MER2_type -2180 238 26 326 230 119 48 chr6 25685043 25685169 -163594385 + L2 LINE L2 3179 3313 0 21 0 0 0 chr6 25685447 25685468 -163594086 + AT_rich Low_complexity Low_complexity 1 21 0 399 277 80 49 chr6 25687692 25687897 -163591657 - MIR SINE MIR -52 210 1 182 402 24 12 chr6 25687913 25688077 -163591477 - L2 LINE L2 -221 3051 2886 328 383 74 0 chr6 25688227 25688402 -163591152 - MIR SINE MIR -13 249 62 1713 52 0 0 chr6 25688604 25688815 -163590739 + L1PA3 LINE L1 5945 6155 0 3225 34 0 0 chr6 25688816 25689199 -163590355 + L1PA3 LINE L1 5770 6152 -3 2247 114 10 0 chr6 25689228 25689535 -163590019 + AluSp SINE Alu 3 312 -1 1076 217 26 92 chr6 25690309 25690700 -163588854 + MLT1A1 LTR MaLR 1 365 0 270 104 75 0 chr6 25691444 25691511 -163588043 + (TTATA)n Simple_repeat Simple_repeat 1 72 0 214 406 23 8 chr6 25692059 25692192 -163587362 + MIR SINE MIR 7 141 -121 496 357 61 54 chr6 25692327 25692840 -163586714 + L2 LINE L2 2746 3260 -12 180 0 0 0 chr6 25693163 25693183 -163586371 + (TG)n Simple_repeat Simple_repeat 2 21 0 1122 166 9 36 chr6 25693818 25694041 -163585513 + AluJb SINE Alu 86 302 -10 250 231 13 26 chr6 25694319 25694397 -163585157 + (CTA)n Simple_repeat Simple_repeat 1 77 0 341 93 19 0 chr6 25694437 25694491 -163585063 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 393 22 0 0 chr6 25694501 25694547 -163585007 + (TG)n Simple_repeat Simple_repeat 2 47 0 397 307 118 49 chr6 25694952 25695359 -163584195 + L1ME LINE L1 4799 5233 -913 330 271 157 65 chr6 25695503 25695886 -163583668 + L1ME LINE L1 5309 5727 -394 2615 141 70 2 chr6 25695961 25696415 -163583139 + MER31A LTR ERV1 1 485 0 23 0 0 0 chr6 25696974 25696997 -163582557 + AT_rich Low_complexity Low_complexity 1 23 0 284 306 159 14 chr6 25697599 25697745 -163581809 - MIR SINE MIR -61 147 33 481 328 97 41 chr6 25697961 25698446 -163581108 - L1ME4a LINE L1 -50 6071 5560 878 204 6 0 chr6 25699168 25699330 -163580224 - FRAM SINE Alu -12 164 2 449 238 46 66 chr6 25702106 25702354 -163577200 + L2 LINE L2 2778 3011 -302 28 61 0 0 chr6 25703391 25703440 -163576114 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr6 25705923 25705948 -163573606 + (T)n Simple_repeat Simple_repeat 1 25 0 211 241 109 58 chr6 25707365 25707502 -163572052 - MIR SINE MIR 0 262 119 2419 50 0 54 chr6 25708181 25708498 -163571056 + AluY SINE Alu 1 300 -11 180 97 0 0 chr6 25708502 25708533 -163571021 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 932 202 6 0 chr6 25708557 25708730 -163570824 + AluJb SINE Alu 123 296 -16 2830 88 21 26 chr6 25708802 25709225 -163570329 + L1MA1 LINE L1 5873 6293 -9 37 23 0 0 chr6 25709226 25709270 -163570284 + AT_rich Low_complexity Low_complexity 1 44 0 14282 135 33 7 chr6 25709270 25711585 -163567969 - Tigger1 DNA MER2_type -14 2404 30 295 338 89 19 chr6 25711773 25712042 -163567512 - LTR16C LTR ERVL -14 477 190 274 271 128 60 chr6 25713355 25713488 -163566066 + MLT1J2 LTR MaLR 301 442 -8 2218 110 0 0 chr6 25713514 25713813 -163565741 - AluSg SINE Alu -11 299 1 778 304 148 25 chr6 25714118 25714591 -163564963 - LTR67 LTR ERVL -24 533 3 2245 71 4 0 chr6 25716856 25717137 -163562417 + AluY SINE Alu 5 286 -25 31 0 0 0 chr6 25717137 25717168 -163562386 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 25717677 25717700 -163561854 + AT_rich Low_complexity Low_complexity 1 23 0 514 199 43 43 chr6 25718031 25718172 -163561382 - L1MC1 LINE L1 0 6613 6473 1736 174 146 6 chr6 25718172 25718535 -163561019 - MSTA LTR MaLR 0 428 15 1853 210 78 0 chr6 25718542 25718980 -163560574 - L1MC1 LINE L1 -138 6475 6004 7971 221 50 62 chr6 25718982 25721038 -163558516 - L1MC1 LINE L1 -783 5643 3563 2075 140 21 48 chr6 25721038 25721410 -163558144 - THE1B LTR MaLR -2 362 1 7971 221 50 62 chr6 25721410 25723122 -163556432 - L1MC1 LINE L1 -2863 3563 1928 1973 129 45 3 chr6 25723122 25723408 -163556146 + AluSx SINE Alu 1 298 -14 7971 221 50 62 chr6 25723408 25723685 -163555869 - L1MC1 LINE L1 -4498 1928 1649 848 182 78 29 chr6 25723690 25723932 -163555622 - L1MC1 LINE L1 -4994 1432 1179 1974 238 56 55 chr6 25723959 25724179 -163555375 + L1MD2 LINE L1 5454 5672 -687 1950 136 158 13 chr6 25724179 25724553 -163555001 + MSTA LTR MaLR 1 428 0 1974 238 56 55 chr6 25724553 25725010 -163554544 + L1MD2 LINE L1 5672 6132 -227 182 88 0 29 chr6 25725042 25725076 -163554478 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 959 212 47 56 chr6 25725177 25725498 -163554056 + Charlie2 DNA MER1_type 1858 2175 -687 429 222 32 32 chr6 25725692 25725818 -163553736 + MLT1B LTR MaLR 1 126 -264 953 192 38 13 chr6 25725820 25726129 -163553425 - L1M3 LINE L1 -706 5474 5164 518 342 125 49 chr6 25726165 25726817 -163552737 - L2 LINE L2 -2 3270 2568 495 318 198 0 chr6 25726853 25727230 -163552324 + L2 LINE L2 2751 3215 -98 1955 157 0 10 chr6 25727738 25728044 -163551510 - AluSx SINE Alu -8 304 2 267 133 0 0 chr6 25729512 25729557 -163549997 + (TG)n Simple_repeat Simple_repeat 2 46 0 259 263 42 11 chr6 25729597 25729692 -163549862 - L1MEc LINE L1 -4687 1876 1779 382 310 210 5 chr6 25729693 25729893 -163549661 - L1MEc LINE L1 -4800 1584 1344 213 242 0 147 chr6 25730400 25730495 -163549059 - L2 LINE L2 -2 3270 3190 24 32 0 0 chr6 25730622 25730653 -163548901 + AT_rich Low_complexity Low_complexity 1 31 0 309 68 0 0 chr6 25732280 25732324 -163547230 + (CA)n Simple_repeat Simple_repeat 2 45 0 204 325 52 39 chr6 25732702 25732856 -163546698 - L2 LINE L2 -473 2841 2686 935 215 61 0 chr6 25734101 25734347 -163545207 - L1MD3 LINE L1 -9 7986 7726 243 215 81 0 chr6 25734348 25734416 -163545138 + L1MC4a LINE L1 7298 7363 -445 2322 132 11 21 chr6 25734430 25734809 -163544745 - THE1C LTR MaLR 0 375 1 9115 130 51 5 chr6 25734809 25736320 -163543234 - THE1C-int LTR MaLR 0 1580 1 1692 199 38 14 chr6 25736320 25736686 -163542868 - THE1C LTR MaLR 0 375 1 511 236 13 34 chr6 25736686 25736886 -163542668 + L1MC4 LINE L1 7359 7583 -251 537 248 89 32 chr6 25736960 25737117 -163542437 + FRAM SINE Alu 1 166 0 407 286 122 19 chr6 25737969 25738182 -163541372 - MIR SINE MIR 0 262 28 31 44 0 0 chr6 25738673 25738718 -163540836 + AT_rich Low_complexity Low_complexity 1 45 0 3710 170 16 40 chr6 25738838 25739628 -163539926 - L1MC1 LINE L1 -8 6325 5555 250 373 27 27 chr6 25739754 25739864 -163539690 + MER5B DNA MER1_type 69 178 0 3808 156 19 33 chr6 25740505 25741237 -163538317 + MER50 LTR ERV1 1 722 -12 307 338 56 6 chr6 25741284 25741444 -163538110 + LTR16B LTR ERVL 137 304 -160 3120 151 24 6 chr6 25741454 25741990 -163537564 + MER41C LTR ERV1 9 554 0 3684 144 14 65 chr6 25743336 25744064 -163535490 - LTR8 LTR ERV1 0 691 1 385 280 80 0 chr6 25744141 25744266 -163535288 - MER5A DNA MER1_type 0 189 55 237 227 45 91 chr6 25744387 25744475 -163535079 - MER5A DNA MER1_type -102 87 4 400 280 19 19 chr6 25746426 25746533 -163533021 - L2 LINE L2 -12 3301 3195 225 94 0 0 chr6 25746935 25746967 -163532587 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 443 274 98 7 chr6 25747169 25747322 -163532232 - MIR3 SINE MIR -12 196 30 347 314 29 40 chr6 25748484 25748659 -163530895 - MLT1K LTR MaLR -284 304 132 617 222 72 75 chr6 25748787 25749121 -163530433 + MER57A LTR ERV1 68 400 -3 210 309 170 11 chr6 25749859 25749953 -163529601 + MIR3 SINE MIR 5 113 -95 24 0 0 0 chr6 25750575 25750599 -163528955 + AT_rich Low_complexity Low_complexity 1 24 0 241 244 49 130 chr6 25750772 25750895 -163528659 - L2 LINE L2 0 3313 3201 25 31 0 0 chr6 25752325 25752357 -163527197 + AT_rich Low_complexity Low_complexity 1 32 0 1955 167 37 42 chr6 25752440 25752802 -163526752 + MSTB1 LTR MaLR 1 362 -70 2502 57 0 0 chr6 25752802 25753098 -163526456 - AluY SINE Alu -15 296 1 1955 167 37 42 chr6 25753098 25753165 -163526389 + MSTB1 LTR MaLR 362 428 -4 370 240 29 19 chr6 25753614 25753718 -163525836 - MLT1J2 LTR MaLR -287 163 59 1812 144 11 7 chr6 25753753 25754037 -163525517 - AluJb SINE Alu -27 285 1 293 241 88 44 chr6 25754829 25754966 -163524588 - MLT1J LTR MaLR -37 474 332 353 336 33 56 chr6 25755377 25755591 -163523963 - L2 LINE L2 -188 3084 2876 183 311 149 0 chr6 25755623 25755697 -163523857 - L2 LINE L2 -435 2879 2795 2150 122 0 0 chr6 25756404 25756691 -163522863 - AluSx SINE Alu -25 287 1 1237 163 5 0 chr6 25757002 25757204 -163522350 - MER2 DNA MER2_type -135 210 8 180 0 0 0 chr6 25758050 25758070 -163521484 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 26 30 0 0 chr6 25758234 25758267 -163521287 + AT_rich Low_complexity Low_complexity 1 33 0 697 320 34 6 chr6 25758423 25758601 -163520953 - MER91A DNA MER1_type -13 183 1 246 32 0 0 chr6 25758659 25758690 -163520864 + (TTG)n Simple_repeat Simple_repeat 2 32 0 223 350 55 38 chr6 25758933 25759116 -163520438 - MIR SINE MIR -48 214 29 917 286 54 60 chr6 25759219 25759891 -163519663 - L2 LINE L2 -4 3309 2626 221 303 26 13 chr6 25759919 25759995 -163519559 - L2 LINE L2 -782 2532 2456 22 0 0 0 chr6 25760401 25760423 -163519131 + AT_rich Low_complexity Low_complexity 1 22 0 285 344 11 0 chr6 25760816 25760909 -163518645 + MIR SINE MIR 168 261 -1 679 202 0 0 chr6 25761061 25761175 -163518379 - MER81 DNA DNA 0 114 1 1055 291 8 16 chr6 25761615 25761997 -163517557 + L1ME1 LINE L1 5771 6149 -17 789 183 0 0 chr6 25762325 25762478 -163517076 + (CA)n Simple_repeat Simple_repeat 1 153 0 1464 234 24 33 chr6 25762486 25763043 -163516511 - L1MC/D LINE L1 -686 5673 5127 22 56 0 0 chr6 25763338 25763374 -163516180 + AT_rich Low_complexity Low_complexity 1 36 0 244 321 30 30 chr6 25764341 25764475 -163515079 + MIR SINE MIR 123 256 -6 22 35 0 0 chr6 25764895 25764924 -163514630 + AT_rich Low_complexity Low_complexity 1 29 0 1759 150 60 119 chr6 25765747 25765967 -163513587 + MSTB LTR MaLR 2 183 -243 2063 109 7 0 chr6 25765967 25766241 -163513313 - AluSq SINE Alu -37 276 1 1759 150 60 119 chr6 25766241 25766472 -163513082 + MSTB LTR MaLR 183 426 0 795 309 153 15 chr6 25766841 25767461 -163512093 + L2 LINE L2 2599 3308 -5 213 362 62 45 chr6 25767660 25768063 -163511491 + L2 LINE L2 1530 1939 -1375 379 323 67 27 chr6 25769055 25769352 -163510202 + L1MC/D LINE L1 5445 5753 -2055 701 262 99 4 chr6 25769721 25769954 -163509600 - MIR SINE MIR 0 262 8 198 0 0 0 chr6 25771638 25771660 -163507894 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1899 130 7 4 chr6 25771973 25772249 -163507305 + AluSg SINE Alu 1 277 -33 243 0 0 0 chr6 25772253 25772280 -163507274 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 25772333 25772357 -163507197 + AT_rich Low_complexity Low_complexity 1 24 0 1695 183 94 40 chr6 25772688 25773021 -163506533 + MSTB LTR MaLR 1 361 -65 2385 100 6 0 chr6 25773021 25773332 -163506222 - AluSq SINE Alu 0 313 1 1695 183 94 40 chr6 25773332 25773402 -163506152 + MSTB LTR MaLR 361 426 0 343 310 82 35 chr6 25774417 25774672 -163504882 - LTR16A LTR ERVL -159 291 25 2069 108 0 7 chr6 25774789 25775077 -163504477 - AluSc SINE Alu -23 286 1 354 254 28 56 chr6 25775469 25775611 -163503943 - HERV16 LTR ERVL -809 4845 4708 570 293 142 21 chr6 25775660 25775998 -163503556 - HERV16 LTR ERVL -1103 4661 4283 341 337 50 44 chr6 25776029 25776766 -163502788 - HERV16 LTR ERVL -1288 4197 3440 344 328 42 32 chr6 25776968 25777159 -163502395 - HERV16 LTR ERVL -1905 3091 2937 963 299 22 29 chr6 25777268 25777972 -163501582 - HERV16 LTR ERVL -2628 2368 1597 3103 46 0 10 chr6 25777989 25778377 -163501177 - L1PA7 LINE L1 0 6154 5771 3710 53 25 0 chr6 25778789 25779261 -163500293 + L1PA5 LINE L1 5669 6152 -2 1177 289 65 37 chr6 25779338 25779934 -163499620 - HERV16 LTR ERVL -4056 940 328 843 337 90 3 chr6 25780235 25780624 -163498930 - LTR16A LTR ERVL -10 440 18 1488 174 0 0 chr6 25781068 25781326 -163498228 - Tigger3(Golem) DNA MER2_type 0 3038 2781 653 206 76 0 chr6 25781323 25781454 -163498100 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 1743 213 3 14 chr6 25782202 25782573 -163496981 + MER21B LTR ERV1 1 454 -477 2002 147 27 51 chr6 25782585 25782994 -163496560 - MSTB1 LTR MaLR -18 414 16 1420 224 75 36 chr6 25782974 25783416 -163496138 + MER21B LTR ERV1 354 812 -51 * 333 47 0 0 chr6 25783750 25783793 -163495761 + (CA)n Simple_repeat Simple_repeat 1 43 0 188 167 21 0 chr6 25783794 25783842 -163495712 + CT-rich Low_complexity Low_complexity 1 49 0 4920 232 67 24 chr6 25783855 25786831 -163492723 + L1MC2 LINE L1 1435 4633 -1793 749 238 162 15 chr6 25786833 25787163 -163492391 - MSTB2 LTR MaLR 0 396 1 4041 178 45 78 chr6 25787169 25787343 -163492211 + L1MC2 LINE L1 5407 5585 -1039 1901 169 0 7 chr6 25787343 25787639 -163491915 - AluSx SINE Alu -18 294 1 4041 178 45 78 chr6 25787639 25787938 -163491616 + L1MC2 LINE L1 5585 5892 -732 1042 169 6 12 chr6 25787938 25788104 -163491450 - FAM SINE Alu -7 168 4 4041 178 45 78 chr6 25788104 25788259 -163491295 + L1MC2 LINE L1 5892 6051 -573 2415 51 0 3 chr6 25788259 25788553 -163491001 - AluY SINE Alu -18 293 1 4041 178 45 78 chr6 25788553 25788915 -163490639 + L1MC2 LINE L1 6051 6373 -251 2236 114 0 3 chr6 25788915 25789222 -163490332 - AluSx SINE Alu 0 312 7 4041 178 45 78 chr6 25789222 25789455 -163490099 + L1MC2 LINE L1 6373 6612 -12 983 256 122 12 chr6 25793574 25793894 -163485660 - MER69 DNA AcHobo -2160 366 12 559 298 154 41 chr6 25794702 25794849 -163484705 - L2 LINE L2 -4 3309 3180 2583 70 38 5 chr6 25794849 25795219 -163484335 + L1PA7 LINE L1 5773 6154 0 559 298 154 41 chr6 25795219 25795596 -163483958 - L2 LINE L2 -133 3180 2713 1465 158 98 21 chr6 25795596 25795881 -163483673 - AluJo SINE Alu -5 307 1 559 298 154 41 chr6 25795881 25795931 -163483623 - L2 LINE L2 -600 2713 2670 186 43 0 0 chr6 25796655 25796678 -163482876 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr6 25798222 25798262 -163481292 + AT_rich Low_complexity Low_complexity 1 40 0 2387 61 3 0 chr6 25798652 25798946 -163480608 - AluY SINE Alu -16 295 1 226 350 94 33 chr6 25799180 25799360 -163480194 + L3b LINE CR1 1391 1581 -2 180 171 171 57 chr6 25800032 25800102 -163479452 - MIR SINE MIR -31 231 154 250 250 0 0 chr6 25800543 25800603 -163478951 + GA-rich Low_complexity Low_complexity 3 62 0 336 102 0 0 chr6 25800603 25800652 -163478902 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 854 123 0 34 chr6 25800641 25800820 -163478734 + (GGGAA)n Simple_repeat Simple_repeat 5 177 0 14226 62 6 1 chr6 25801009 25803660 -163475894 + L1PA5 LINE L1 3494 6148 -6 22 35 0 0 chr6 25803740 25803769 -163475785 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 25804263 25804284 -163475270 + GC_rich Low_complexity Low_complexity 1 21 0 621 157 0 0 chr6 25804473 25804588 -163474966 + GA-rich Low_complexity Low_complexity 2 116 0 265 319 15 15 chr6 25804634 25804769 -163474785 + L1ME LINE L1 352 486 -5886 1516 270 55 50 chr6 25804786 25804839 -163474715 + L1ME LINE L1 415 466 -5906 1278 228 103 36 chr6 25804839 25805277 -163474277 + MLT1C LTR MaLR 1 467 0 1516 270 55 50 chr6 25805277 25806037 -163473517 + L1ME LINE L1 466 1232 -5140 372 270 43 10 chr6 25806034 25806290 -163473264 + L1ME LINE L1 1174 1581 -4942 * 1358 226 60 70 chr6 25806291 25806750 -163472804 - L1MCc LINE L1 -1484 5457 5004 1720 160 20 36 chr6 25806750 25807056 -163472498 + AluJb SINE Alu 1 301 -11 1358 226 60 70 chr6 25807056 25807194 -163472360 - L1MCc LINE L1 -1937 5004 4866 1428 202 33 23 chr6 25807201 25807508 -163472046 + AluJb SINE Alu 1 310 -2 1066 143 0 8 chr6 25807512 25807874 -163471680 + (GGAA)n Simple_repeat Simple_repeat 1 360 0 1881 264 74 26 chr6 25807910 25808574 -163470980 - L1MCc LINE L1 -2085 4856 4116 1688 171 77 12 chr6 25808574 25808901 -163470653 - MER7A DNA MER2_type 0 346 1 1881 264 74 26 chr6 25808901 25809340 -163470214 - L1MCc LINE L1 -2825 4116 3700 236 212 15 0 chr6 25809411 25809477 -163470077 + (TA)n Simple_repeat Simple_repeat 2 68 0 446 105 13 0 chr6 25809484 25809560 -163469994 + L1MA9 LINE L1 6231 6307 -5 403 304 60 0 chr6 25809577 25809761 -163469793 - L1MCc LINE L1 -3317 3624 3430 1415 263 87 20 chr6 25809775 25810640 -163468914 - L1MCc LINE L1 -4681 2191 795 1713 183 38 9 chr6 25810729 25811074 -163468480 + MLT1A1 LTR MaLR 11 365 0 1157 170 59 0 chr6 25811810 25812063 -163467491 - L1MA7 LINE L1 -26 6265 5998 772 292 85 8 chr6 25812174 25812564 -163466990 - L1MCc LINE L1 -6000 423 4 301 378 0 0 chr6 25812695 25812814 -163466740 - MLT1I LTR MaLR -89 320 202 470 314 88 49 chr6 25813158 25813610 -163465944 + L3b LINE CR1 1105 1574 -9 240 219 0 27 chr6 25813987 25814024 -163465530 + (TATATG)n Simple_repeat Simple_repeat 6 42 -34 1921 190 3 0 chr6 25814024 25814371 -163465183 - MER7A DNA MER2_type 0 346 1 240 219 0 27 chr6 25814371 25814406 -163465148 + (TATATG)n Simple_repeat Simple_repeat 42 76 0 21 0 0 0 chr6 25815356 25815377 -163464177 + AT_rich Low_complexity Low_complexity 1 21 0 1289 299 42 28 chr6 25815979 25816630 -163462924 - Charlie7 DNA MER1_type -1889 723 64 30 0 0 0 chr6 25817723 25817753 -163461801 + AT_rich Low_complexity Low_complexity 1 30 0 1994 176 0 0 chr6 25820587 25820899 -163458655 - AluJb SINE Alu 0 312 1 829 360 48 12 chr6 25821511 25821930 -163457624 - MLT2E LTR ERVL -192 436 3 5471 284 55 37 chr6 25822199 25823954 -163455600 - ERVL LTR ERVL -387 5377 3571 3359 98 4 2 chr6 25823954 25824404 -163455150 - MLT2A2 LTR ERVL 0 453 3 5471 284 55 37 chr6 25824404 25824920 -163454634 - ERVL LTR ERVL -2193 3571 3066 1485 283 52 11 chr6 25825045 25825586 -163453968 - ERVL LTR ERVL -2857 2907 2345 207 263 12 50 chr6 25825883 25825963 -163453591 + L2 LINE L2 3232 3308 -5 468 229 57 8 chr6 25826319 25826441 -163453113 + MER94 DNA DNA 2 129 -5 24 0 0 0 chr6 25828235 25828259 -163451295 + AT_rich Low_complexity Low_complexity 1 24 0 529 231 33 0 chr6 25828378 25828499 -163451055 - L1MC4a LINE L1 -992 6816 6692 180 0 0 0 chr6 25828652 25828672 -163450882 + (T)n Simple_repeat Simple_repeat 1 20 0 1866 124 8 0 chr6 25828672 25828931 -163450623 - AluSq SINE Alu -50 263 3 1051 311 125 22 chr6 25831386 25831985 -163447569 + MLT2F LTR ERVL 3 663 0 258 32 0 0 chr6 25832749 25832780 -163446774 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 88 0 0 chr6 25834370 25834404 -163445150 + (GA)n Simple_repeat Simple_repeat 1 34 0 275 289 32 90 chr6 25835849 25836005 -163443549 + MIR SINE MIR 34 180 -82 852 162 11 76 chr6 25837833 25838018 -163441536 + MLT1C LTR MaLR 3 175 -292 958 141 0 12 chr6 25838033 25838203 -163441351 + L1M2 LINE L1 2188 2355 -4494 908 202 27 11 chr6 25838265 25838453 -163441101 + MLT1C LTR MaLR 276 466 -1 221 375 73 0 chr6 25838694 25838790 -163440764 + L2 LINE L2 3125 3227 -45 201 196 0 0 chr6 25841693 25841744 -163437810 + (CA)n Simple_repeat Simple_repeat 1 51 0 236 244 0 0 chr6 25841892 25841937 -163437617 + MER5B DNA MER1_type 6 50 -128 924 78 0 0 chr6 25842059 25842174 -163437380 + AluY SINE Alu 168 282 -29 258 56 0 0 chr6 25842174 25842210 -163437344 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 379 252 0 59 chr6 25842255 25842374 -163437180 + MER5B DNA MER1_type 60 171 -7 222 350 20 10 chr6 25842387 25842487 -163437067 + MIR SINE MIR 118 218 -44 33 0 0 0 chr6 25843009 25843042 -163436512 + AT_rich Low_complexity Low_complexity 1 33 0 452 269 81 12 chr6 25843237 25843397 -163436157 + MIR3 SINE MIR 37 207 -1 243 192 67 29 chr6 25844242 25844346 -163435208 + HAL1 LINE L1 46 153 -2354 1278 106 0 0 chr6 25844527 25844697 -163434857 + AluSq SINE Alu 1 170 -143 288 0 0 0 chr6 25845229 25845261 -163434293 + (TA)n Simple_repeat Simple_repeat 2 33 0 614 152 9 0 chr6 25845261 25845366 -163434188 - AluSg/x SINE Alu -12 298 193 1822 131 4 4 chr6 25845627 25845887 -163433667 - AluSq SINE Alu -53 260 1 273 312 9 37 chr6 25845961 25846070 -163433484 - MER5B DNA MER1_type -71 107 2 261 213 160 0 chr6 25846762 25846856 -163432698 + L1MC/D LINE L1 5665 5773 -2035 24 32 0 0 chr6 25847102 25847133 -163432421 + AT_rich Low_complexity Low_complexity 1 31 0 4256 218 62 46 chr6 25848481 25849228 -163430326 - L1MC1 LINE L1 -18 6595 5862 6838 59 8 3 chr6 25849228 25850626 -163428928 + L1PA5 LINE L1 4748 6149 -5 4256 218 62 46 chr6 25850626 25850730 -163428824 - L1MC1 LINE L1 -751 5862 5761 2440 86 53 0 chr6 25850730 25851067 -163428487 + THE1A LTR MaLR 1 355 0 4256 218 62 46 chr6 25851067 25852840 -163426714 - L1MC1 LINE L1 -852 5761 3854 1025 161 6 11 chr6 25852841 25853015 -163426539 - MER6B DNA MER2_type 0 210 38 3782 220 60 26 chr6 25853024 25854766 -163424788 - L1MC1 LINE L1 -2592 3834 2036 2013 168 24 63 chr6 25854778 25855188 -163424366 - MSTB LTR MaLR -32 394 1 8404 180 17 25 chr6 25855188 25856852 -163422702 - MSTB-int LTR MaLR 0 1651 1 2382 174 21 5 chr6 25856852 25857271 -163422283 - MSTB LTR MaLR 0 426 1 7036 190 46 30 chr6 25857272 25858631 -163420923 - L1MC1 LINE L1 -4399 2027 538 207 0 0 0 chr6 25858631 25858654 -163420900 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7036 190 46 30 chr6 25858654 25859182 -163420372 - L1MC1 LINE L1 -5888 538 20 38 22 0 0 chr6 25859577 25859622 -163419932 + AT_rich Low_complexity Low_complexity 1 45 0 281 330 25 106 chr6 25859718 25859954 -163419600 + MIR SINE MIR 46 262 0 238 337 102 10 chr6 25860266 25860364 -163419190 + MIR SINE MIR 19 125 -83 1776 175 75 0 chr6 25860373 25860693 -163418861 - MER7A DNA MER2_type -2 344 3 2420 34 41 0 chr6 25861080 25861374 -163418180 + AluY SINE Alu 1 306 -5 25 75 0 0 chr6 25861481 25861534 -163418020 + AT_rich Low_complexity Low_complexity 1 53 0 237 356 44 0 chr6 25862756 25862846 -163416708 + MIR SINE MIR 22 115 -93 207 0 0 0 chr6 25863370 25863393 -163416161 + (TA)n Simple_repeat Simple_repeat 2 24 0 318 242 50 61 chr6 25863873 25863972 -163415582 + LTR67 LTR ERVL 419 516 -41 1630 152 105 31 chr6 25864814 25865064 -163414490 - MER7A DNA MER2_type -2693 345 66 2246 127 0 0 chr6 25865064 25865371 -163414183 - AluSq SINE Alu -6 307 1 1630 152 105 31 chr6 25865371 25865443 -163414111 - MER7A DNA MER2_type -2972 66 1 1797 126 35 53 chr6 25867439 25867757 -163411797 + AluSx SINE Alu 1 312 0 2039 194 2 37 chr6 25867865 25868273 -163411281 - MSTD LTR MaLR 0 396 3 6510 238 67 19 chr6 25868275 25869921 -163409633 - MSTD-int LTR MaLR 0 1735 11 1651 201 39 49 chr6 25869925 25869984 -163409570 - MSTD LTR MaLR -11 385 327 2921 6 0 0 chr6 25869984 25870299 -163409255 + AluYb8 SINE Alu 1 315 -3 1651 201 39 49 chr6 25870299 25870628 -163408926 - MSTD LTR MaLR -69 327 1 364 288 33 47 chr6 25871497 25871709 -163407845 - L1MC4 LINE L1 -1026 7016 6808 192 97 0 0 chr6 25873083 25873114 -163406440 + (CGAG)n Simple_repeat Simple_repeat 2 32 0 2585 48 3 3 chr6 25873500 25873809 -163405745 + AluY SINE Alu 3 311 0 237 163 0 0 chr6 25873982 25874031 -163405523 + A-rich Low_complexity Low_complexity 4 52 0 294 263 26 40 chr6 25874118 25874194 -163405360 - L2 LINE L2 -47 3266 3192 27 49 0 0 chr6 25877166 25877207 -163402347 + AT_rich Low_complexity Low_complexity 1 41 0 1390 116 65 0 chr6 25877421 25877636 -163401918 - MER30 DNA MER1_type -1 229 1 260 295 24 69 chr6 25878508 25878673 -163400881 - MIR SINE MIR -41 167 11 1165 209 146 7 chr6 25878783 25879085 -163400469 + MER2 DNA MER2_type 1 344 -1 27 0 0 0 chr6 25879617 25879644 -163399910 + AT_rich Low_complexity Low_complexity 1 27 0 200 264 0 42 chr6 25879664 25879736 -163399818 + A-rich Low_complexity Low_complexity 5 73 0 181 362 7 7 chr6 25879810 25879948 -163399606 + L2 LINE L2 2827 2964 -308 269 287 55 105 chr6 25880319 25880500 -163399054 + MER5B DNA MER1_type 7 178 0 336 325 124 18 chr6 25880790 25880959 -163398595 + MIR SINE MIR 1 187 -75 318 336 81 20 chr6 25882550 25882699 -163396855 - L2 LINE L2 0 3272 3115 2133 117 0 7 chr6 25882816 25883107 -163396447 + AluSg SINE Alu 1 289 -21 254 320 13 0 chr6 25883984 25884059 -163395495 - L2 LINE L2 -12 3260 3185 1121 128 17 39 chr6 25884068 25884248 -163395306 + AluSg/x SINE Alu 117 292 -20 226 164 18 0 chr6 25884254 25884309 -163395245 + L1MCa LINE L1 2006 2061 -4365 272 271 35 0 chr6 25884354 25884439 -163395115 + L1MC4 LINE L1 6614 6701 -1341 2078 114 17 17 chr6 25884798 25885097 -163394457 + AluSx SINE Alu 4 302 -10 7704 21 1 0 chr6 25885097 25886724 -163392830 + L1PA3 LINE L1 4528 6155 0 238 193 34 0 chr6 25887239 25887263 -163392291 + (TATATG)n Simple_repeat Simple_repeat 1 23 -68 2485 160 87 58 chr6 25887263 25887603 -163391951 + MER6A DNA MER2_type 2 368 -497 2022 150 7 0 chr6 25887603 25887910 -163391644 + AluSx SINE Alu 3 311 -1 2485 160 87 58 chr6 25887910 25888156 -163391398 + MER6A DNA MER2_type 368 605 0 238 193 34 0 chr6 25888156 25888219 -163391335 + (TATATG)n Simple_repeat Simple_repeat 23 91 0 21 0 0 0 chr6 25889454 25889475 -163390079 + AT_rich Low_complexity Low_complexity 1 21 0 47 78 0 0 chr6 25890680 25890783 -163388771 + AT_rich Low_complexity Low_complexity 1 103 0 421 327 187 21 chr6 25891571 25892214 -163387340 - L2 LINE L2 -1 3312 2550 326 300 133 48 chr6 25892413 25892449 -163387105 - L1MC4a LINE L1 -1898 5910 5875 399 288 158 42 chr6 25892449 25892810 -163386744 - L1MB7 LINE L1 -320 5864 5462 600 275 162 28 chr6 25892993 25893277 -163386277 - L2 LINE L2 -955 2359 2038 217 324 35 56 chr6 25894915 25895057 -163384497 - L2 LINE L2 -1483 1831 1693 354 297 193 34 chr6 25895171 25895440 -163384114 - L2 LINE L2 -2772 542 231 226 279 41 93 chr6 25896243 25896397 -163383157 + MIR SINE MIR 13 162 -62 414 250 21 35 chr6 25898100 25898244 -163381310 - L1ME LINE L1 -460 5661 5520 229 343 137 20 chr6 25898306 25898452 -163381102 - L2 LINE L2 -8 3264 3102 217 345 62 18 chr6 25898759 25898872 -163380682 + MIR3 SINE MIR 6 123 -85 236 280 161 35 chr6 25899179 25899322 -163380232 + L2 LINE L2 3152 3312 -1 532 0 29 0 chr6 25899821 25899889 -163379665 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1537 215 133 95 chr6 25899936 25900675 -163378879 - L1ME2 LINE L1 -9 6224 5458 2044 147 0 3 chr6 25900681 25900988 -163378566 - AluSx SINE Alu -4 308 3 2183 127 0 0 chr6 25901067 25901367 -163378187 - AluSq SINE Alu -13 300 1 3596 259 83 15 chr6 25901387 25902984 -163376570 - L1ME2 LINE L1 -813 5402 3697 705 251 87 18 chr6 25903009 25903400 -163376154 - L1ME2 LINE L1 -2842 3373 2956 599 338 34 22 chr6 25903398 25903718 -163375836 - L1ME2 LINE L1 -5972 424 101 * 37 23 0 0 chr6 25903927 25903971 -163375583 + AT_rich Low_complexity Low_complexity 1 44 0 1513 244 161 16 chr6 25904158 25904654 -163374900 - MLT1E LTR MaLR -25 568 1 286 151 27 0 chr6 25904691 25904764 -163374790 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 386 316 26 32 chr6 25904856 25905198 -163374356 + L1ME3 LINE L1 1277 1616 -4780 368 99 37 12 chr6 25905202 25905283 -163374271 + (TA)n Simple_repeat Simple_repeat 2 84 0 696 281 33 24 chr6 25905303 25905752 -163373802 + L1ME3 LINE L1 5081 5534 -709 824 291 67 17 chr6 25905776 25906134 -163373420 + L1ME3 LINE L1 5854 6229 -2 572 293 5 49 chr6 25906443 25906648 -163372906 - MIR SINE MIR -6 256 61 242 250 0 17 chr6 25906650 25906710 -163372844 + L2 LINE L2 3254 3312 -1 369 315 293 6 chr6 25906906 25907230 -163372324 - L2 LINE L2 0 3313 2897 295 265 10 10 chr6 25907573 25907671 -163371883 - MER5A DNA MER1_type -83 106 9 287 348 81 6 chr6 25908010 25908171 -163371383 - L2 LINE L2 -6 3307 3135 22 0 0 0 chr6 25908696 25908718 -163370836 + AT_rich Low_complexity Low_complexity 1 22 0 280 307 193 0 chr6 25910573 25910713 -163368841 + L2 LINE L2 3145 3311 -2 624 279 20 56 chr6 25911058 25911309 -163368245 + MIR SINE MIR 2 243 -19 1548 136 3 92 chr6 25911810 25912126 -163367428 - AluJb SINE Alu -20 292 5 225 161 69 0 chr6 25912521 25912608 -163366946 + (TA)n Simple_repeat Simple_repeat 1 93 0 673 304 75 8 chr6 25912988 25913241 -163366313 - MLT1J LTR MaLR -4 507 238 6695 213 60 60 chr6 25913505 25916337 -163363217 + L1MC3 LINE L1 5281 7995 0 630 199 171 0 chr6 25917270 25917451 -163362103 - L1MA4 LINE L1 -6 6294 6083 1698 156 3 11 chr6 25917533 25917815 -163361739 - AluJb SINE Alu -32 280 1 2533 57 0 13 chr6 25918089 25918404 -163361150 + AluY SINE Alu 1 311 0 6641 28 13 1 chr6 25918406 25919200 -163360354 + L1PA5 LINE L1 5352 6154 0 312 326 78 0 chr6 25919331 25919472 -163360082 + MIR SINE MIR 105 256 -6 201 323 50 20 chr6 25920687 25920786 -163358768 + L2 LINE L2 2588 2689 -625 889 279 50 76 chr6 25922402 25922863 -163356691 + L1ME LINE L1 13 460 -5610 2285 122 0 0 chr6 25922863 25923174 -163356380 + AluSx SINE Alu 2 312 0 889 279 50 76 chr6 25923174 25923249 -163356305 + L1ME LINE L1 460 535 -5535 286 293 105 19 chr6 25923276 25923542 -163356012 + L1ME LINE L1 616 904 -5166 678 278 40 31 chr6 25923542 25923765 -163355789 - MLT2F LTR ERVL -438 225 1 1496 191 0 11 chr6 25923892 25924165 -163355389 + AluJb SINE Alu 31 300 -12 928 267 98 4 chr6 25924365 25924642 -163354912 - ERVL LTR ERVL -371 5393 5091 1099 251 67 6 chr6 25924642 25924957 -163354597 + MLT1C LTR MaLR 6 339 -128 2061 275 14 29 chr6 25924958 25925515 -163354039 - ERVL LTR ERVL -1937 3827 3279 2673 255 81 25 chr6 25925528 25926703 -163352851 - ERVL LTR ERVL -2692 3072 1795 312 268 82 0 chr6 25926704 25926801 -163352753 + L1M4 LINE L1 4260 4364 -1782 747 303 56 14 chr6 25926802 25927086 -163352468 - ERVL LTR ERVL -4704 1060 765 700 193 225 0 chr6 25927682 25927869 -163351685 - MLT2F LTR ERVL -2 661 433 1350 228 102 39 chr6 25927879 25928261 -163351293 - MLT1F1 LTR MaLR -6 561 156 594 240 0 27 chr6 25928272 25928422 -163351132 + MLT1A1 LTR MaLR 13 158 -207 1612 76 23 1 chr6 25928422 25928758 -163350796 - L1PA8 LINE L1 -673 5481 5141 * 5055 76 4 7 chr6 25928757 25929438 -163350116 + L1PA8 LINE L1 5493 6171 -1 980 227 14 5 chr6 25929446 25929666 -163349888 + MLT1A1 LTR MaLR 144 365 0 513 208 92 8 chr6 25929671 25929791 -163349763 - MLT1F1 LTR MaLR -428 139 10 1137 254 69 40 chr6 25929809 25930329 -163349225 + L1ME2 LINE L1 5627 6161 -3 234 197 79 150 chr6 25930611 25930738 -163348816 + MLT1H LTR MaLR 229 346 -203 193 305 189 24 chr6 25932330 25932477 -163347077 + MIR SINE MIR 15 193 -69 2102 89 0 0 chr6 25932477 25932768 -163346786 + L1PA8 LINE L1 5878 6168 -4 193 305 189 24 chr6 25932768 25932784 -163346770 + MIR SINE MIR 193 205 -57 3081 167 48 32 chr6 25933704 25934411 -163345143 - L1MA9 LINE L1 -5 6307 5590 1195 112 0 22 chr6 25934414 25934592 -163344962 - AluY SINE Alu -36 275 102 5899 176 66 27 chr6 25934592 25936103 -163343451 - L1MA9 LINE L1 -722 5590 4011 261 0 0 0 chr6 25936471 25936500 -163343054 + (CA)n Simple_repeat Simple_repeat 2 30 0 402 124 14 0 chr6 25937674 25937742 -163341812 + L1PA13 LINE L1 6064 6142 -14 5526 193 39 27 chr6 25939260 25941467 -163338087 - L1PA16 LINE L1 -16 6150 3932 2234 42 7 14 chr6 25941509 25941793 -163337761 - L1PA5 LINE L1 -7 6147 5866 5515 53 16 0 chr6 25941793 25942982 -163336572 + L1PA5 LINE L1 4663 5864 -290 918 204 0 0 chr6 25943757 25943924 -163335630 + MER3 DNA MER1_type 43 209 0 2197 103 3 13 chr6 25944421 25944723 -163334831 + AluSx SINE Alu 14 312 0 316 220 99 0 chr6 25945048 25945139 -163334415 + L1MB7 LINE L1 6073 6172 -12 2088 113 7 0 chr6 25945246 25945530 -163334024 + AluSp SINE Alu 1 286 -27 1561 200 60 3 chr6 25946571 25946921 -163332633 - L1MB4 LINE L1 -15 6165 5796 1685 175 17 3 chr6 25947689 25947980 -163331574 - AluSx SINE Alu -17 295 1 290 82 0 0 chr6 25950747 25950796 -163328758 + Charlie5 DNA MER1_type 2438 2486 -126 1927 99 4 0 chr6 25950881 25951134 -163328420 - AluSg SINE Alu -14 296 43 27 0 0 0 chr6 25951366 25951393 -163328161 + AT_rich Low_complexity Low_complexity 1 27 0 309 280 9 19 chr6 25951466 25951573 -163327981 - L1MC4 LINE L1 -1323 6719 6614 * 314 272 0 22 chr6 25951483 25951575 -163327979 + L1MC4 LINE L1 6614 6703 -1339 967 214 97 13 chr6 25952368 25952667 -163326887 + MER33 DNA MER1_type 1 324 0 377 271 60 12 chr6 25952797 25952963 -163326591 + L1ME LINE L1 5525 5698 -423 23 0 0 0 chr6 25953633 25953656 -163325898 + AT_rich Low_complexity Low_complexity 1 23 0 184 239 152 0 chr6 25954384 25954430 -163325124 + L2 LINE L2 3237 3289 -24 279 188 94 0 chr6 25954564 25954628 -163324926 - L1ME1 LINE L1 -21 6145 6076 * 1750 265 83 24 chr6 25954627 25955788 -163323766 - L1MEc LINE L1 -3135 3080 1874 298 263 32 21 chr6 25955822 25955917 -163323637 - L1ME1 LINE L1 -31 6135 6040 1410 227 48 93 chr6 25955972 25956488 -163323066 + MLT2B1 LTR ERVL 18 510 -10 1481 274 16 42 chr6 25956492 25956905 -163322649 - L1ME1 LINE L1 -187 5979 5580 2183 108 0 3 chr6 25956905 25957201 -163322353 + AluSx SINE Alu 1 295 -17 1481 274 16 42 chr6 25957201 25957290 -163322264 - L1ME1 LINE L1 -586 5580 5490 717 310 73 20 chr6 25957300 25957933 -163321621 - L1MEc LINE L1 -5232 1164 499 270 287 9 43 chr6 25958080 25958195 -163321359 - L1MEc LINE L1 -6241 155 45 24 0 0 0 chr6 25960320 25960344 -163319210 + AT_rich Low_complexity Low_complexity 1 24 0 264 359 56 34 chr6 25960357 25960591 -163318963 - MIR SINE MIR -16 246 8 21703 31 6 0 chr6 25960908 25964306 -163315248 + L1PA3 LINE L1 2751 6154 -1 237 230 23 23 chr6 25965019 25965106 -163314448 + (CATA)n Simple_repeat Simple_repeat 2 88 0 308 249 2 10 chr6 25965143 25965240 -163314314 + L1MC4 LINE L1 7904 7992 -3 391 296 97 36 chr6 25966557 25966753 -163312801 + MIR SINE MIR 20 227 -35 210 341 95 16 chr6 25969786 25969912 -163309642 + L2 LINE L2 3122 3257 -15 262 154 0 0 chr6 25970542 25970594 -163308960 + L1MCc LINE L1 1417 1468 -4955 2258 79 27 3 chr6 25970746 25971038 -163308516 + AluY SINE Alu 4 302 -9 1002 282 123 7 chr6 25971074 25971528 -163308026 + L1ME3A LINE L1 5627 6133 -37 25 0 0 0 chr6 25971549 25971574 -163307980 + AT_rich Low_complexity Low_complexity 1 25 0 673 203 8 0 chr6 25973236 25973359 -163306195 - FLAM_C SINE Alu -12 131 8 337 351 80 0 chr6 25973560 25973748 -163305806 + MIR SINE MIR 48 250 -12 521 379 53 32 chr6 25973925 25974449 -163305105 + L2 LINE L2 2506 3210 -62 314 308 22 11 chr6 25974580 25974671 -163304883 + L2 LINE L2 3202 3293 -20 186 133 0 0 chr6 25975327 25975357 -163304197 + (T)n Simple_repeat Simple_repeat 1 30 0 233 340 28 57 chr6 25976002 25976143 -163303411 - MIR3 SINE MIR -52 156 20 296 269 141 43 chr6 25976961 25977195 -163302359 + MIR SINE MIR 6 262 0 * 338 372 73 38 chr6 25977173 25977514 -163302040 - L3 LINE CR1 -7 1570 1218 8804 115 73 3 chr6 25977832 25980064 -163299490 + L1PA10 LINE L1 3765 6159 -9 246 273 68 61 chr6 25981581 25981713 -163297841 - MIR SINE MIR -123 139 7 216 0 0 0 chr6 25981854 25981878 -163297676 + (A)n Simple_repeat Simple_repeat 1 24 0 195 42 0 0 chr6 25982672 25982696 -163296858 + (T)n Simple_repeat Simple_repeat 1 24 0 7450 22 0 0 chr6 25982852 25983719 -163295835 + L1PA3 LINE L1 5286 6152 -3 312 284 23 0 chr6 25985603 25985691 -163293863 + L1MC4 LINE L1 6614 6703 -1339 * 335 301 0 0 chr6 25985632 25985725 -163293829 - L1MC4 LINE L1 -1336 6706 6614 * 345 227 0 62 chr6 25985706 25985803 -163293751 + L1MC4 LINE L1 6613 6703 -1339 307 264 0 66 chr6 25985772 25985878 -163293676 - L1MC4 LINE L1 -1336 6706 6608 * 354 242 0 42 chr6 25985876 25985971 -163293583 + L1MC4 LINE L1 6613 6703 -1339 307 264 0 66 chr6 25985940 25986046 -163293508 - L1MC4 LINE L1 -1336 6706 6608 * 301 262 0 75 chr6 25986042 25986149 -163293405 - L1MC4 LINE L1 -1336 6706 6608 * 308 238 0 79 chr6 25986179 25986280 -163293274 - L1MC4 LINE L1 -1336 6706 6614 363 194 0 0 chr6 25986285 25986388 -163293166 + (TA)n Simple_repeat Simple_repeat 1 103 0 229 59 0 20 chr6 25986388 25986439 -163293115 - LTR66 LTR ERVL -166 444 395 312 287 108 54 chr6 25986474 25986641 -163292913 + MIR3 SINE MIR 32 207 -1 267 242 106 53 chr6 25988163 25988295 -163291259 + LTR67 LTR ERVL 347 485 -72 41796 39 23 3 chr6 25988307 25994335 -163285219 + L1PA3 LINE L1 1 6155 0 2812 78 3 5 chr6 25994336 25994722 -163284832 + L1PA7 LINE L1 5769 6153 -1 23 54 0 0 chr6 25995188 25995225 -163284329 + AT_rich Low_complexity Low_complexity 1 37 0 260 348 25 29 chr6 25995357 25995561 -163283993 - L3 LINE CR1 -465 1112 910 1407 201 0 82 chr6 25995561 25995890 -163283664 + AluJb SINE Alu 1 302 0 1495 277 89 37 chr6 25995933 25996393 -163283161 + L1MEc LINE L1 284 719 -5677 1600 149 133 104 chr6 25996393 25996844 -163282710 - MLT1C LTR MaLR 0 467 4 1495 277 89 37 chr6 25996844 25997639 -163281915 + L1MEc LINE L1 719 1472 -4924 2161 113 0 7 chr6 25997639 25997941 -163281613 + AluSg SINE Alu 1 300 -10 1495 277 89 37 chr6 25997941 25998436 -163281118 + L1MEc LINE L1 1472 2243 -4153 * 6550 66 6 1 chr6 25998423 25999262 -163280292 - L1P LINE L1 -1848 4298 3456 2277 239 79 16 chr6 25999915 26000724 -163278830 - L1M4 LINE L1 -3159 2987 2128 7239 37 7 0 chr6 26000748 26002079 -163277475 - L1PA4 LINE L1 -1 6154 4814 * 23584 53 4 3 chr6 26002074 26005884 -163273670 + L1PA5 LINE L1 2343 6153 -1 1831 164 0 10 chr6 26006363 26006674 -163272880 + AluJb SINE Alu 2 309 -3 325 236 170 0 chr6 26006690 26006902 -163272652 + L1ME LINE L1 5561 5808 -313 220 137 39 0 chr6 26006962 26007013 -163272541 + (CA)n Simple_repeat Simple_repeat 2 54 0 1907 198 8 6 chr6 26007020 26007384 -163272170 - MLT1A1 LTR MaLR 0 365 1 414 237 179 6 chr6 26008951 26009057 -163270497 - LTR50 LTR ERVL 0 795 709 180 0 0 0 chr6 26009057 26009077 -163270477 + (CTA)n Simple_repeat Simple_repeat 1 20 0 414 237 179 6 chr6 26009077 26009143 -163270411 - LTR50 LTR ERVL -86 709 593 1258 216 56 44 chr6 26009675 26010088 -163269466 - LTR52 LTR ERVL -3 418 1 255 31 0 0 chr6 26010322 26010354 -163269200 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 303 114 59 chr6 26010671 26010734 -163268820 - HAL1b LINE L1 -439 909 851 723 85 101 47 chr6 26010734 26010863 -163268691 + MER85 DNA T2_type 3 138 -1 266 303 114 59 chr6 26010863 26011394 -163268160 - HAL1b LINE L1 -497 851 282 23 68 0 0 chr6 26012257 26012301 -163267253 + AT_rich Low_complexity Low_complexity 1 44 0 3348 194 84 10 chr6 26012301 26013212 -163266342 - L1MB7 LINE L1 -8 6674 5695 1028 136 26 0 chr6 26013216 26013371 -163266183 - AluSg/x SINE Alu -17 295 137 3470 226 51 24 chr6 26013371 26014477 -163265077 - L1MB7 LINE L1 -945 5699 4565 393 274 86 12 chr6 26014456 26014711 -163264843 - L1MB7 LINE L1 -4031 2615 2342 * 1292 260 71 11 chr6 26014801 26015251 -163264303 - L1MB7 LINE L1 -4538 2108 1632 2592 228 51 23 chr6 26015273 26015998 -163263556 - L1MB7 LINE L1 -4985 1557 813 268 286 57 23 chr6 26016003 26016178 -163263376 - L1MEd LINE L1 -5041 1078 898 408 262 152 8 chr6 26016393 26016649 -163262905 + L1ME4a LINE L1 5585 5877 -244 34 24 0 0 chr6 26018250 26018291 -163261263 + AT_rich Low_complexity Low_complexity 1 41 0 419 50 119 0 chr6 26018291 26018450 -163261104 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 0 0 0 chr6 26018450 26018471 -163261083 + AT_rich Low_complexity Low_complexity 1 21 0 458 359 36 28 chr6 26019029 26019422 -163260132 + MERVL LTR ERVL 4720 5115 -370 319 272 89 57 chr6 26019544 26019702 -163259852 + MERVL LTR ERVL 5173 5335 -319 387 299 107 0 chr6 26019771 26019948 -163259606 - L1ME LINE L1 -305 5816 5621 936 57 81 0 chr6 26020122 26020246 -163259308 - MER85 DNA T2_type 0 139 6 196 132 0 26 chr6 26020679 26020717 -163258837 + L2 LINE L2 3272 3308 -5 1868 175 105 33 chr6 26021446 26021903 -163257651 + LTR2B LTR ERV1 1 490 0 403 250 35 49 chr6 26022077 26022221 -163257333 - ERVL LTR ERVL -5061 703 562 43 56 0 0 chr6 26023089 26023160 -163256394 + AT_rich Low_complexity Low_complexity 1 71 0 429 236 19 143 chr6 26023336 26023595 -163255959 - L2 LINE L2 -2 3311 3085 1508 58 0 0 chr6 26023709 26023899 -163255655 - L1PA5 LINE L1 0 6154 5965 344 390 22 16 chr6 26023982 26024164 -163255390 + L1MEc LINE L1 268 450 -5946 2111 105 3 22 chr6 26024261 26024576 -163254978 + AluSc SINE Alu 1 309 0 194 306 159 45 chr6 26027510 26027667 -163251887 - MIR SINE MIR -80 182 8 304 362 58 11 chr6 26027848 26028022 -163251532 - MIR3 SINE MIR -9 199 18 2857 3 0 0 chr6 26028415 26028726 -163250828 - AluYa5 SINE Alu 0 311 1 222 37 0 0 chr6 26029074 26029101 -163250453 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 26029325 26029348 -163250206 + AT_rich Low_complexity Low_complexity 1 23 0 416 265 113 54 chr6 26029497 26029933 -163249621 + L1ME4a LINE L1 5584 6039 -82 6459 87 22 22 chr6 26029937 26031102 -163248452 - L1PA8 LINE L1 -7 6165 4993 5807 91 11 1 chr6 26031102 26031973 -163247581 + L1PA8 LINE L1 4098 4977 -1169 234 271 263 0 chr6 26032140 26032273 -163247281 - MIR SINE MIR -29 233 66 246 202 39 47 chr6 26032482 26032611 -163246943 + (CTATA)n Simple_repeat Simple_repeat 2 129 0 478 68 68 0 chr6 26032624 26032742 -163246812 + (TA)n Simple_repeat Simple_repeat 1 126 0 376 321 46 51 chr6 26032744 26032940 -163246614 + MIR SINE MIR 20 214 -48 21 36 0 0 chr6 26033841 26033869 -163245685 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr6 26033944 26033982 -163245572 + AT_rich Low_complexity Low_complexity 1 38 0 271 275 0 0 chr6 26037058 26037138 -163242416 + L1M1 LINE L1 3539 3618 -3947 226 297 14 0 chr6 26037735 26037809 -163241745 + MIR SINE MIR 21 95 -167 563 100 12 0 chr6 26039695 26039775 -163239779 + AluSc SINE Alu 4 84 -225 1070 175 37 30 chr6 26039785 26040499 -163239055 + SVA Other Other 434 703 -683 1644 104 0 0 chr6 26040619 26040830 -163238724 + AluSc SINE Alu 73 283 -26 402 261 88 106 chr6 26041729 26042058 -163237496 - L2 LINE L2 0 3313 2991 3135 98 28 0 chr6 26042094 26042563 -163236991 + L1PA13 LINE L1 5660 6141 -22 188 174 72 43 chr6 26042895 26042964 -163236590 + L2 LINE L2 2905 2975 -338 2095 102 28 7 chr6 26043301 26043585 -163235969 - AluSq SINE Alu -10 303 14 631 217 12 36 chr6 26044571 26044737 -163234817 + L1MDa LINE L1 21 182 -6358 1471 265 74 26 chr6 26044742 26045516 -163234038 + L1M1 LINE L1 4631 5453 -2112 2229 107 7 7 chr6 26045516 26045824 -163233730 - AluSx SINE Alu -4 308 1 1471 265 74 26 chr6 26045824 26045925 -163233629 + L1M1 LINE L1 5453 5548 -2017 1078 129 10 10 chr6 26045936 26046129 -163233425 + L1PB1 LINE L1 3 195 -6668 12492 194 46 12 chr6 26046133 26049613 -163229941 + L1PB1 LINE L1 635 4541 -2326 2278 106 0 13 chr6 26049613 26049924 -163229630 + AluSg SINE Alu 1 307 -3 12492 194 46 12 chr6 26049924 26052334 -163227220 + L1PB1 LINE L1 4541 6867 0 3146 228 73 20 chr6 26052389 26054212 -163225342 + L1MD1 LINE L1 5546 7458 -203 2358 92 0 0 chr6 26054214 26054509 -163225045 + AluSx SINE Alu 1 295 -17 27 81 0 0 chr6 26055339 26055401 -163224153 + AT_rich Low_complexity Low_complexity 1 62 0 512 284 17 0 chr6 26056167 26056343 -163223211 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 240 6 0 chr6 26056380 26056551 -163223003 + (CA)n Simple_repeat Simple_repeat 2 173 0 201 361 52 31 chr6 26056581 26056772 -163222782 + L2 LINE L2 2551 2745 -569 1872 126 11 3 chr6 26056775 26057061 -163222493 + L1PA15 LINE L1 5860 6147 -18 369 233 71 4 chr6 26057913 26058018 -163221536 + L1ME4a LINE L1 5493 5583 -538 186 43 0 0 chr6 26058076 26058099 -163221455 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr6 26058159 26058188 -163221366 + AT_rich Low_complexity Low_complexity 1 29 0 344 296 61 15 chr6 26058266 26058398 -163221156 + L1ME4a LINE L1 5927 6064 -57 230 247 47 47 chr6 26060129 26060214 -163219340 + MIR SINE MIR 68 152 -56 347 0 23 0 chr6 26060662 26060705 -163218849 + (CA)n Simple_repeat Simple_repeat 2 45 0 689 185 7 15 chr6 26060791 26060926 -163218628 + AluJb SINE Alu 1 134 -178 180 0 0 0 chr6 26060948 26060968 -163218586 + (TA)n Simple_repeat Simple_repeat 2 21 0 220 351 123 18 chr6 26061144 26061315 -163218239 + MIR3 SINE MIR 14 202 -6 194 333 29 0 chr6 26061275 26061344 -163218210 + L2 LINE L2 651 721 -2593 * 793 253 93 8 chr6 26062417 26062674 -163216880 - MLT1C LTR MaLR 0 467 189 2410 87 6 3 chr6 26062719 26063030 -163216524 - AluSx SINE Alu 0 312 1 214 400 11 11 chr6 26063048 26063143 -163216411 - MIR SINE MIR -152 110 16 249 333 0 14 chr6 26063424 26063496 -163216058 + L2 LINE L2 3151 3221 -51 314 325 84 18 chr6 26063559 26063725 -163215829 - MIR SINE MIR -35 227 51 474 294 7 0 chr6 26064594 26064740 -163214814 - MIR SINE MIR -33 229 83 243 310 10 0 chr6 26064927 26065027 -163214527 - LTR33 LTR ERVL -53 468 368 1986 135 3 52 chr6 26065229 26065555 -163213999 + AluSx SINE Alu 1 310 -2 297 284 17 52 chr6 26067532 26067648 -163211906 - MIR SINE MIR -59 203 92 604 323 65 4 chr6 26070765 26070997 -163208557 + MIR SINE MIR 3 248 -14 1108 233 37 18 chr6 26071432 26071758 -163207796 + L1M1 LINE L1 16 347 -7218 283 350 62 46 chr6 26071820 26072014 -163207540 - L2 LINE L2 -87 3185 2989 725 251 92 26 chr6 26073271 26073542 -163206012 - MER110 LTR ERV1 -37 454 166 227 198 10 109 chr6 26073618 26073719 -163205835 - MER110A LTR ERV1 -298 170 80 289 208 247 0 chr6 26074187 26074264 -163205290 + L2 LINE L2 3176 3271 -1 298 391 0 0 chr6 26074405 26074515 -163205039 - L2 LINE L2 -1 3271 3162 242 319 0 11 chr6 26074537 26074631 -163204923 + (CCA)n Simple_repeat Simple_repeat 3 95 0 184 254 104 30 chr6 26074747 26074814 -163204740 - MER5A DNA MER1_type -109 80 9 1518 222 88 49 chr6 26075729 26076215 -163203339 - MLT1D LTR MaLR 0 505 1 23 78 0 0 chr6 26076295 26076346 -163203208 + AT_rich Low_complexity Low_complexity 1 51 0 1471 173 29 0 chr6 26077943 26078255 -163201299 + L1 LINE L1 4375 4695 -1451 573 100 0 0 chr6 26078257 26078347 -163201207 - Tigger5 DNA MER2_type -182 2141 2052 471 162 51 8 chr6 26078354 26078471 -163201083 - L1MC3 LINE L1 -11 7774 7653 2213 187 29 65 chr6 26078480 26079037 -163200517 - L1MC3 LINE L1 -850 6935 6399 9725 139 47 8 chr6 26079088 26079885 -163199669 + Tigger1 DNA MER2_type 128 893 -1525 2049 126 27 7 chr6 26079885 26080186 -163199368 - AluSx SINE Alu -5 307 1 9725 139 47 8 chr6 26080186 26081161 -163198393 + Tigger1 DNA MER2_type 893 1968 -450 1319 163 19 31 chr6 26081167 26081424 -163198130 + Tigger1 DNA MER2_type 2165 2418 0 2041 178 146 66 chr6 26081437 26082101 -163197453 - L1MC3 LINE L1 -1421 6364 5648 * 2469 298 85 53 chr6 26082081 26083055 -163196499 - L1MEc LINE L1 -1459 4756 3730 3607 74 118 4 chr6 26083055 26083598 -163195956 + LTR14B LTR ERVK 4 608 0 2469 298 85 53 chr6 26083598 26083905 -163195649 - L1MEc LINE L1 -2485 3730 3434 376 236 93 12 chr6 26083898 26084059 -163195495 - L1MEc LINE L1 -3123 3092 2919 * 1057 251 78 17 chr6 26084069 26084623 -163194931 - L1MEc LINE L1 -3504 2711 2170 1994 208 26 9 chr6 26084933 26085360 -163194194 + Tigger2a DNA MER2_type 1 434 0 192 298 0 0 chr6 26085560 26085607 -163193947 - MIR SINE MIR -120 142 96 21 36 0 0 chr6 26086421 26086449 -163193105 + AT_rich Low_complexity Low_complexity 1 28 0 243 169 108 0 chr6 26086852 26086917 -163192637 - MLT1A1 LTR MaLR 0 396 325 32 0 0 0 chr6 26086927 26086959 -163192595 + AT_rich Low_complexity Low_complexity 1 32 0 948 237 82 40 chr6 26086966 26087270 -163192284 - MLT1A1 LTR MaLR -48 317 1 324 308 112 50 chr6 26087270 26087592 -163191962 + HAL1 LINE L1 97 438 -2069 1125 210 47 5 chr6 26087618 26088082 -163191472 + MLT1E2 LTR MaLR 70 623 -3 245 262 65 9 chr6 26088709 26088816 -163190738 + HAL1 LINE L1 1289 1401 -1106 5380 109 43 37 chr6 26090038 26091668 -163187886 - L1PA10 LINE L1 -16 6152 4525 676 160 100 7 chr6 26091668 26091818 -163187736 + L1PA13 LINE L1 1973 2136 -4651 1391 57 62 0 chr6 26091940 26092132 -163187422 - L1PA4 LINE L1 -8 6147 5944 283 327 129 0 chr6 26093158 26093259 -163186295 - MIR SINE MIR -78 130 17 1002 213 253 26 chr6 26094134 26094187 -163185367 + MLT1A2 LTR MaLR 1 41 -333 3036 162 34 42 chr6 26094187 26094804 -163184750 - LTR9 LTR ERV1 0 612 1 1002 213 253 26 chr6 26094804 26095055 -163184499 + MLT1A2 LTR MaLR 41 374 0 192 97 0 0 chr6 26097180 26097211 -163182343 + (TC)n Simple_repeat Simple_repeat 1 31 0 329 244 111 76 chr6 26097293 26097465 -163182089 - MER5B DNA MER1_type 0 178 1 2438 47 0 20 chr6 26097574 26097873 -163181681 + AluY SINE Alu 1 293 -18 1118 224 65 78 chr6 26098224 26098657 -163180897 + LTR37B LTR ERV1 9 435 -33 2174 150 19 6 chr6 26098704 26099063 -163180491 - THE1B LTR MaLR 0 364 1 1780 164 10 7 chr6 26099978 26100271 -163179283 + AluSx SINE Alu 1 294 -18 402 286 72 27 chr6 26102058 26102264 -163177290 + MLT1G LTR MaLR 42 258 -332 1488 198 40 3 chr6 26102974 26103272 -163176282 + AluJo SINE Alu 1 309 -3 278 268 114 0 chr6 26103996 26104119 -163175435 - Charlie7 DNA MER1_type -2475 137 1 702 259 74 0 chr6 26104127 26104316 -163175238 + MER58A DNA MER1_type 1 203 -21 925 212 0 0 chr6 26104369 26104534 -163175020 + FAM SINE Alu 3 167 -8 270 266 106 80 chr6 26104775 26104911 -163174643 + MIR SINE MIR 3 147 -115 2150 126 0 0 chr6 26104911 26105204 -163174350 + AluSx SINE Alu 1 293 -19 270 266 106 80 chr6 26105204 26105266 -163174288 + MIR SINE MIR 147 206 -56 21 0 0 0 chr6 26105274 26105295 -163174259 + AT_rich Low_complexity Low_complexity 1 21 0 1228 244 74 65 chr6 26105605 26106065 -163173489 + MLT1C LTR MaLR 1 464 -3 204 309 0 15 chr6 26106923 26106991 -163172563 + GA-rich Low_complexity Low_complexity 2 68 0 2300 178 79 5 chr6 26108627 26108694 -163170860 - MER70B LTR ERVL -102 476 415 585 28 0 0 chr6 26108694 26108765 -163170789 + (CA)n Simple_repeat Simple_repeat 1 71 0 2300 178 79 5 chr6 26108765 26109140 -163170414 - MER70B LTR ERVL -163 415 1 357 220 69 27 chr6 26109332 26109472 -163170082 - MLT1I LTR MaLR -19 428 293 585 69 0 0 chr6 26109498 26109585 -163169969 + (CA)n Simple_repeat Simple_repeat 2 88 0 252 296 80 75 chr6 26110315 26110541 -163169013 - MIR SINE MIR -2 260 34 1508 185 109 3 chr6 26110816 26111146 -163168408 - MLT1A1 LTR MaLR 0 365 1 2230 111 0 22 chr6 26111823 26112138 -163167416 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr6 26112236 26112257 -163167297 + AT_rich Low_complexity Low_complexity 1 21 0 265 304 65 77 chr6 26112495 26112663 -163166891 - MIR SINE MIR -73 189 24 1965 121 0 65 chr6 26112892 26113214 -163166340 + AluSx SINE Alu 1 301 -11 1719 194 90 29 chr6 26113948 26114005 -163165549 - Charlie1b DNA MER1_type -2238 523 471 2161 99 0 33 chr6 26114005 26114308 -163165246 + AluSg SINE Alu 1 293 -17 1719 194 90 29 chr6 26114308 26114741 -163164813 - Charlie1b DNA MER1_type -2290 471 3 266 286 126 8 chr6 26114875 26114994 -163164560 + MIR SINE MIR 52 184 -78 607 240 0 0 chr6 26115666 26115787 -163163767 - L1ME LINE L1 -393 5777 5657 239 132 26 0 chr6 26115810 26115848 -163163706 + MER8 DNA MER2_type 3 41 -198 873 181 154 0 chr6 26115865 26116053 -163163501 + MER2 DNA MER2_type 128 344 -1 440 259 19 4 chr6 26116066 26116182 -163163372 - L1ME LINE L1 -545 5625 5512 10337 172 65 4 chr6 26116397 26118783 -163160771 + L1MA8 LINE L1 3060 5585 -727 1157 156 72 13 chr6 26118784 26119132 -163160422 - MSTA LTR MaLR 0 428 1 3704 162 29 11 chr6 26119132 26119825 -163159729 + L1MA8 LINE L1 5582 6286 -5 429 180 20 30 chr6 26120009 26120109 -163159445 + MER5A DNA MER1_type 13 111 -78 280 301 60 0 chr6 26120743 26120826 -163158728 - MER91C DNA MER1_type -15 125 38 24 0 0 0 chr6 26121562 26121586 -163157968 + AT_rich Low_complexity Low_complexity 1 24 0 827 271 75 16 chr6 26121798 26122053 -163157501 - MLT1D LTR MaLR -192 313 44 197 303 53 26 chr6 26122188 26122264 -163157290 - L2 LINE L2 -15 3257 3180 994 195 0 48 chr6 26122325 26122535 -163157019 - MLT1D LTR MaLR -305 200 1 410 200 0 0 chr6 26123333 26123413 -163156141 - L1ME LINE L1 -453 5668 5589 480 188 0 0 chr6 26123555 26123635 -163155919 + MER82 DNA MER2_type 1 80 -573 3911 227 42 4 chr6 26123821 26124844 -163154710 + L1P LINE L1 2601 3662 -2484 458 43 0 72 chr6 26125533 26125602 -163153952 + MER53 DNA DNA 2 65 -124 2036 127 0 3 chr6 26126431 26126715 -163152839 - AluSc SINE Alu -26 283 1 1206 178 35 5 chr6 26127177 26127379 -163152175 + AluJo SINE Alu 2 209 -103 447 19 0 0 chr6 26127391 26127443 -163152111 + (A)n Simple_repeat Simple_repeat 1 52 0 261 353 69 0 chr6 26128585 26128687 -163150867 + MIR3 SINE MIR 73 181 -27 368 288 63 37 chr6 26129583 26129663 -163149891 - L1ME3A LINE L1 -10 6160 6084 1160 227 174 78 chr6 26129663 26130204 -163149350 + MLT1E LTR MaLR 1 593 0 368 288 63 37 chr6 26130204 26130314 -163149240 - L1ME3A LINE L1 -86 6084 5965 710 284 64 25 chr6 26130424 26130763 -163148791 - L1ME3A LINE L1 -264 5898 5553 251 297 0 0 chr6 26131606 26131670 -163147884 - MLT1J2 LTR MaLR -120 330 267 239 226 97 40 chr6 26131847 26131971 -163147583 + L1MB1 LINE L1 3550 3680 -2466 * 3417 200 71 55 chr6 26131948 26132776 -163146778 + L1MB1 LINE L1 4150 4963 -1203 2103 4 0 0 chr6 26132776 26133002 -163146552 + AluY SINE Alu 86 311 0 3417 200 71 55 chr6 26133002 26133056 -163146498 + L1MB1 LINE L1 4963 5015 -1151 2222 123 0 0 chr6 26133056 26133366 -163146188 + AluSg SINE Alu 1 310 0 3417 200 71 55 chr6 26133366 26133419 -163146135 + L1MB1 LINE L1 5015 5066 -1100 2191 118 7 0 chr6 26133419 26133723 -163145831 + AluSg SINE Alu 1 306 -4 3417 200 71 55 chr6 26133723 26134683 -163144871 + L1MB1 LINE L1 5066 6148 -18 2187 100 3 0 chr6 26134826 26135115 -163144439 - AluSp SINE Alu -8 305 16 272 239 0 76 chr6 26137080 26137172 -163142382 + MIR SINE MIR 49 133 -75 324 256 38 53 chr6 26137579 26137712 -163141842 - MIR SINE MIR -46 216 86 452 312 29 23 chr6 26137871 26138044 -163141510 + MIR SINE MIR 56 229 -33 25 51 0 0 chr6 26138204 26138243 -163141311 + AT_rich Low_complexity Low_complexity 1 39 0 235 382 31 11 chr6 26138567 26138758 -163140796 - MIR3 SINE MIR -9 199 5 381 254 117 65 chr6 26140703 26140792 -163138762 + MIR SINE MIR 23 106 -156 1847 122 47 0 chr6 26140792 26141070 -163138484 - AluSx SINE Alu -21 291 1 381 254 117 65 chr6 26141070 26141209 -163138345 + MIR SINE MIR 106 258 -4 788 193 53 48 chr6 26141316 26141503 -163138051 - MER5A DNA MER1_type -1 188 1 182 207 241 0 chr6 26143292 26143350 -163136204 - L2 LINE L2 -19 3294 3223 342 362 69 28 chr6 26143514 26143732 -163135822 + L2 LINE L2 2860 3086 -186 212 304 116 58 chr6 26143813 26143951 -163135603 - L2 LINE L2 -10 3303 3158 288 277 198 0 chr6 26145023 26145124 -163134430 + L2 LINE L2 3188 3308 -5 375 291 55 0 chr6 26145318 26145445 -163134109 - MIR SINE MIR 0 262 129 353 310 23 47 chr6 26145905 26145930 -163133624 + MIR3 SINE MIR 50 74 -134 2202 109 21 47 chr6 26145930 26146315 -163133239 - THE1C LTR MaLR 0 375 1 353 310 23 47 chr6 26146315 26146418 -163133136 + MIR3 SINE MIR 74 175 -33 1688 71 0 9 chr6 26146991 26147201 -163132353 + AluSg/x SINE Alu 85 292 -20 487 303 17 0 chr6 26147209 26147328 -163132226 + MIR3 SINE MIR 36 156 -52 1833 217 25 60 chr6 26147998 26148514 -163131040 - MLT1D LTR MaLR -7 498 1 404 328 49 0 chr6 26148514 26148636 -163130918 + L2 LINE L2 3183 3310 -3 3411 111 25 25 chr6 26148682 26148723 -163130831 - Tigger1 DNA MER2_type -180 2238 2198 2428 61 3 13 chr6 26148723 26149035 -163130519 + AluY SINE Alu 2 310 -1 3411 111 25 25 chr6 26149035 26149543 -163130011 - Tigger1 DNA MER2_type -219 2199 1689 5561 142 18 15 chr6 26149543 26150990 -163128564 - L1PB3 LINE L1 0 6154 4751 1533 233 72 38 chr6 26151082 26151529 -163128025 - MLT1C LTR MaLR 0 467 6 194 278 0 19 chr6 26152721 26152775 -163126779 + L2 LINE L2 3218 3270 -2 6320 128 42 34 chr6 26154176 26154435 -163125119 + HSMAR2 DNA Mariner 1 256 -1046 787 188 88 0 chr6 26154435 26154595 -163124959 + FAM SINE Alu 1 174 -1 6320 128 42 34 chr6 26154595 26155440 -163124114 + HSMAR2 DNA Mariner 256 1115 -187 3362 124 6 0 chr6 26155445 26155952 -163123602 + L1PA10 LINE L1 3906 4415 -1731 4559 97 8 1 chr6 26157601 26158389 -163121165 + L1PA10 LINE L1 5100 5891 -277 30 27 0 0 chr6 26158737 26158774 -163120780 + AT_rich Low_complexity Low_complexity 1 37 0 185 116 0 47 chr6 26158946 26158989 -163120565 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 440 272 82 49 chr6 26159237 26159824 -163119730 - L1PB3 LINE L1 -2165 3981 3370 1673 184 10 26 chr6 26160501 26160810 -163118744 - AluJo SINE Alu -8 304 1 1617 130 86 51 chr6 26160827 26161119 -163118435 - AluSx SINE Alu -8 304 3 410 237 79 13 chr6 26161200 26161352 -163118202 - MER103 DNA DNA -1 165 4 250 327 53 9 chr6 26162362 26162475 -163117079 + MIR SINE MIR 133 250 -12 238 280 10 40 chr6 26162791 26162891 -163116663 - MIR SINE MIR -60 202 106 359 234 64 0 chr6 26163338 26163432 -163116122 + MER110 LTR ERV1 1 100 -391 1539 204 33 25 chr6 26163480 26163872 -163115682 + MER110 LTR ERV1 78 472 -19 452 284 104 35 chr6 26164106 26164307 -163115247 - MIR SINE MIR -26 236 22 477 252 8 65 chr6 26164525 26164648 -163114906 + L1MC/D LINE L1 5496 5614 -556 22 0 0 0 chr6 26164992 26165014 -163114540 + AT_rich Low_complexity Low_complexity 1 22 0 470 298 120 11 chr6 26165845 26166036 -163113518 - MIR SINE MIR -15 247 36 2180 99 3 0 chr6 26166073 26166396 -163113158 + AluSp SINE Alu 1 324 0 2146 89 0 17 chr6 26167483 26167774 -163111780 - AluSx SINE Alu -6 306 21 261 267 0 92 chr6 26168255 26168375 -163111179 - MARNA DNA Mariner -223 363 255 336 229 129 14 chr6 26168870 26169010 -163110544 - L1ME4a LINE L1 -2 6119 5964 665 56 0 0 chr6 26169299 26169388 -163110166 + L1PA3 LINE L1 6067 6155 0 383 0 0 21 chr6 26169445 26169493 -163110061 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 422 226 16 48 chr6 26170071 26170195 -163109359 - MER112 DNA MER1_type -8 252 133 1107 213 25 99 chr6 26170575 26170969 -163108585 - MLT1A1 LTR MaLR 0 365 1 2425 97 0 0 chr6 26172588 26172896 -163106658 + AluSx SINE Alu 1 308 -4 7332 37 0 0 chr6 26175019 26176247 -163103307 - L1PA4 LINE L1 0 6155 4926 8258 173 27 110 chr6 26176247 26178434 -163101120 + L1PB1 LINE L1 2478 4845 -1306 459 0 0 0 chr6 26178434 26178485 -163101069 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8258 173 27 110 chr6 26178485 26179569 -163099985 + L1PB1 LINE L1 4845 6017 -134 589 101 0 0 chr6 26179569 26179658 -163099896 + Alu SINE Alu 222 310 0 8258 173 27 110 chr6 26179658 26179953 -163099601 + L1PB1 LINE L1 6017 5770 -381 270 0 0 0 chr6 26179953 26179983 -163099571 + (CA)n Simple_repeat Simple_repeat 2 31 0 8258 173 27 110 chr6 26179983 26180282 -163099272 + L1PB1 LINE L1 5769 6091 -60 1071 248 0 7 chr6 26180286 26180585 -163098969 + L1P LINE L1 4862 5158 -988 290 93 19 0 chr6 26180606 26180660 -163098894 + L1PB2 LINE L1 6097 6151 0 32 0 0 0 chr6 26180660 26180692 -163098862 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr6 26180729 26180785 -163098769 + AT_rich Low_complexity Low_complexity 1 56 0 2410 100 31 19 chr6 26180926 26181286 -163098268 - THE1B LTR MaLR 0 364 1 578 139 20 8 chr6 26181352 26181473 -163098081 + L1MB8 LINE L1 5833 5955 -213 2448 140 74 0 chr6 26181489 26181896 -163097658 + Tigger2 DNA MER2_type 2280 2716 -2 988 164 11 98 chr6 26181899 26182174 -163097380 + L1MB8 LINE L1 5923 6173 -5 22 0 0 0 chr6 26183174 26183196 -163096358 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr6 26185037 26185062 -163094492 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr6 26185103 26185155 -163094399 + (TTTTA)n Simple_repeat Simple_repeat 1 52 0 1655 186 18 4 chr6 26185156 26185431 -163094123 - AluJo SINE Alu -33 279 1 188 358 53 0 chr6 26185983 26186078 -163093476 + MIR SINE MIR 45 144 -64 2067 165 76 2 chr6 26189321 26189714 -163089840 - MSTB LTR MaLR 0 426 5 247 326 34 0 chr6 26189794 26189883 -163089671 - MIR SINE MIR -4 258 167 475 304 91 32 chr6 26189939 26190159 -163089395 + MER115 DNA AcHobo 19 251 -442 28 61 0 0 chr6 26190420 26190469 -163089085 + AT_rich Low_complexity Low_complexity 1 49 0 797 192 113 35 chr6 26191208 26191411 -163088143 + MER20 DNA MER1_type 1 219 0 257 238 30 15 chr6 26191681 26191765 -163087789 - MIR SINE MIR -62 146 64 199 330 124 41 chr6 26192730 26192827 -163086727 - L3 LINE CR1 -69 1508 1404 2289 118 41 8 chr6 26195397 26195760 -163083794 + THE1C LTR MaLR 1 375 0 721 136 40 96 chr6 26195999 26196198 -163083356 + MER53 DNA DNA 2 189 0 2128 183 25 13 chr6 26196856 26197327 -163082227 + L1MB4 LINE L1 5587 6063 -117 2179 136 19 27 chr6 26198022 26198389 -163081165 + THE1B LTR MaLR 1 364 0 373 312 127 9 chr6 26198424 26198645 -163080909 - MIR SINE MIR -14 248 2 348 348 33 16 chr6 26198693 26198877 -163080677 - MIR SINE MIR -56 206 20 289 194 111 37 chr6 26198967 26199075 -163080479 + MER94 DNA DNA 1 116 -18 1277 88 0 0 chr6 26199179 26199338 -163080216 - AluY SINE Alu -6 305 147 367 348 33 16 chr6 26199891 26200075 -163079479 - MIR SINE MIR -56 206 20 289 194 111 37 chr6 26200165 26200273 -163079281 + MER94 DNA DNA 1 116 -18 2265 108 0 7 chr6 26200377 26200684 -163078870 - AluY SINE Alu -6 305 1 1278 62 6 0 chr6 26200684 26200863 -163078691 - L1P3 LINE L1 -681 5491 5312 4489 63 9 0 chr6 26200863 26201434 -163078120 + L1PA7 LINE L1 5569 6147 -7 822 219 35 57 chr6 26201566 26201621 -163077933 + MER58A DNA MER1_type 2 57 -2363 1863 180 0 16 chr6 26201621 26201938 -163077616 - AluJb SINE Alu 0 312 1 822 219 35 57 chr6 26201938 26202110 -163077444 + MER58A DNA MER1_type 57 224 0 220 287 69 11 chr6 26202333 26202420 -163077134 + MIR SINE MIR 170 261 -1 505 345 64 16 chr6 26203990 26204239 -163075315 - MIR SINE MIR 0 262 2 224 326 163 0 chr6 26204528 26204620 -163074934 - MIR SINE MIR -109 153 47 215 225 0 0 chr6 26205654 26205694 -163073860 + (CA)n Simple_repeat Simple_repeat 1 40 0 249 319 0 0 chr6 26206329 26206401 -163073153 - L2 LINE L2 0 3272 3201 283 167 14 14 chr6 26207191 26207263 -163072291 + CT-rich Low_complexity Low_complexity 4 75 0 183 299 78 13 chr6 26207267 26207344 -163072210 - L2 LINE L2 -5 3308 3227 2033 130 16 41 chr6 26209125 26209493 -163070061 + THE1B LTR MaLR 4 362 -2 1976 94 45 4 chr6 26209898 26210184 -163069370 + AluSq SINE Alu 7 303 0 474 315 36 27 chr6 26210187 26210406 -163069148 + HAL1b LINE L1 76 296 -1052 1910 129 59 0 chr6 26210566 26210853 -163068701 + AluSx SINE Alu 1 304 -8 340 302 36 14 chr6 26210949 26211088 -163068466 + L1M4 LINE L1 2923 3064 -3082 306 278 60 60 chr6 26211473 26211624 -163067930 + L1M4 LINE L1 4894 5044 -1102 242 192 0 55 chr6 26212614 26212687 -163066867 + CT-rich Low_complexity Low_complexity 3 71 0 21 0 0 0 chr6 26213091 26213112 -163066442 + AT_rich Low_complexity Low_complexity 1 21 0 530 218 20 0 chr6 26214748 26214849 -163064705 - AluJ SINE Alu -90 222 120 1070 48 5 53 chr6 26214849 26215038 -163064516 + (TTC)n Simple_repeat Simple_repeat 1 180 0 510 112 25 37 chr6 26215040 26215201 -163064353 + CT-rich Low_complexity Low_complexity 1 159 0 1353 28 22 22 chr6 26215439 26215476 -163064078 + (TTC)n Simple_repeat Simple_repeat 1 394 0 1353 28 22 22 chr6 26215476 26215833 -163063721 + (TTC)n Simple_repeat Simple_repeat 1 357 0 735 153 8 0 chr6 26215878 26215996 -163063558 - AluJ SINE Alu -188 124 6 526 270 84 25 chr6 26216102 26216508 -163063046 - L1ME LINE L1 -590 5832 5408 469 300 157 7 chr6 26216525 26216958 -163062596 - L1ME LINE L1 -1038 5368 4871 314 226 66 45 chr6 26216971 26217156 -163062398 - L1ME LINE L1 -4755 1572 1165 330 365 28 86 chr6 26217751 26217848 -163061706 - L1ME LINE L1 -5608 788 687 2304 122 16 24 chr6 26217848 26218225 -163061329 - THE1C LTR MaLR 0 375 2 330 365 28 86 chr6 26218225 26218453 -163061101 - L1ME LINE L1 -5709 687 482 251 393 0 17 chr6 26218501 26218618 -163060936 - MIR3 SINE MIR -6 202 88 407 306 142 31 chr6 26219352 26219676 -163059878 + MLT1J2 LTR MaLR 1 360 -90 994 277 83 31 chr6 26219706 26219937 -163059617 - L1M4 LINE L1 -1793 4353 4136 2272 86 10 3 chr6 26219937 26220240 -163059314 - AluSc SINE Alu -4 305 1 994 277 83 31 chr6 26220240 26220561 -163058993 - L1M4 LINE L1 -2010 4136 3772 805 102 60 6 chr6 26220588 26220755 -163058799 - L1MA7 LINE L1 0 6291 6116 865 121 7 7 chr6 26220786 26220926 -163058628 - LTR18B LTR ERVL -6 608 469 1046 62 0 8 chr6 26220970 26221099 -163058455 - AluSp/q SINE Alu -30 283 156 1852 134 89 78 chr6 26221101 26221548 -163058006 - LTR18B LTR ERVL -162 452 1 3738 153 51 77 chr6 26221548 26223113 -163056441 - L1MA7 LINE L1 -173 6118 4595 811 120 12 36 chr6 26223103 26223270 -163056284 - L1 LINE L1 -1358 4788 4626 * 13547 167 40 10 chr6 26223256 26229014 -163050540 - L1P5 LINE L1 -372 6495 566 247 319 25 34 chr6 26229175 26229294 -163050260 + L2 LINE L2 3155 3272 0 666 308 25 1 chr6 26229648 26229859 -163049695 + MIR SINE MIR 45 259 -3 247 111 0 0 chr6 26231143 26231179 -163048375 + tRNA-Lys-AAG tRNA tRNA 1 36 -40 2074 163 25 33 chr6 26231208 26231768 -163047786 + MLT2A2 LTR ERVL 5 554 0 454 320 121 20 chr6 26231768 26232074 -163047480 - L1MC/D LINE L1 -2193 5615 5279 603 344 47 44 chr6 26232209 26232911 -163046643 - L2 LINE L2 -35 3237 2541 374 191 0 0 chr6 26234439 26234502 -163045052 - MER63 DNA MER1_type -317 745 683 415 259 61 48 chr6 26235793 26235940 -163043614 + MIR SINE MIR 83 231 -31 2291 106 0 3 chr6 26235985 26236287 -163043267 - AluSp SINE Alu -12 301 1 21 36 0 0 chr6 26236287 26236315 -163043239 + AT_rich Low_complexity Low_complexity 1 28 0 304 227 0 45 chr6 26236721 26236809 -163042745 - L1MC4 LINE L1 -1344 6698 6615 333 303 0 0 chr6 26236823 26236912 -163042642 + L1MC4 LINE L1 6615 6703 -1339 341 273 23 0 chr6 26236932 26237020 -163042534 + L1MC4 LINE L1 6614 6703 -1339 308 296 23 0 chr6 26236942 26237030 -163042524 - L1MC4 LINE L1 -1339 6703 6614 * 354 247 47 0 chr6 26237029 26237114 -163042440 + L1MC4 LINE L1 6615 6703 -1339 321 253 72 0 chr6 26237058 26237141 -163042413 - L1MC4 LINE L1 -1339 6703 6615 * 296 143 18 0 chr6 26237146 26237202 -163042352 + (TA)n Simple_repeat Simple_repeat 2 58 0 315 261 11 33 chr6 26237204 26237296 -163042258 + L1MC4 LINE L1 6614 6703 -1339 228 244 11 22 chr6 26237300 26237390 -163042164 + L1MC4 LINE L1 6614 6702 -1340 225 154 0 0 chr6 26237394 26237433 -163042121 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr6 26237462 26237490 -163042064 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 26237510 26237539 -163042015 + AT_rich Low_complexity Low_complexity 1 29 0 570 281 72 18 chr6 26237654 26237881 -163041673 - MIR SINE MIR -2 260 20 388 251 56 62 chr6 26238558 26238916 -163040638 + L1MC5 LINE L1 7552 7907 -54 900 223 27 5 chr6 26239357 26239545 -163040009 - MIR SINE MIR -56 206 15 703 188 91 34 chr6 26239546 26239722 -163039832 + MLT2B3 LTR ERVL 1 186 -368 723 58 0 33 chr6 26239722 26239843 -163039711 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 2157 106 10 7 chr6 26241700 26242001 -163037553 + AluSx SINE Alu 1 302 -10 2089 103 0 31 chr6 26242451 26242780 -163036774 - AluSg SINE Alu 0 320 1 236 313 91 40 chr6 26243076 26243175 -163036379 + MIR SINE MIR 16 119 -89 2149 91 7 29 chr6 26243933 26244241 -163035313 + AluSx SINE Alu 5 305 -7 243 61 0 0 chr6 26245548 26245581 -163033973 + (CA)n Simple_repeat Simple_repeat 1 33 0 339 240 0 0 chr6 26246901 26246976 -163032578 - MER45C DNA AcHobo -1 952 878 886 237 19 19 chr6 26247074 26247289 -163032265 - MER45C DNA AcHobo -733 220 6 203 358 124 29 chr6 26248480 26248617 -163030937 - L2 LINE L2 0 3272 3123 196 356 127 29 chr6 26248736 26248941 -163030613 - L2 LINE L2 -225 3047 2823 2307 100 3 25 chr6 26248946 26249266 -163030288 + AluSp SINE Alu 1 313 0 180 211 26 0 chr6 26249403 26249441 -163030113 + L2 LINE L2 3234 3272 0 580 266 44 0 chr6 26249948 26250106 -163029448 - MIR SINE MIR 0 262 98 613 207 36 93 chr6 26250725 26250918 -163028636 + MIR SINE MIR 81 262 0 1678 163 77 9 chr6 26251396 26251722 -163027832 + MER7A DNA MER2_type 1 346 0 314 313 130 58 chr6 26252126 26252525 -163027029 - L1M2 LINE L1 -5920 929 502 205 308 22 11 chr6 26252547 26252638 -163026916 + CT-rich Low_complexity Low_complexity 1 92 0 524 254 68 59 chr6 26255559 26255795 -163023759 - L2 LINE L2 -43 3270 3033 3071 157 31 2 chr6 26256800 26257374 -163022180 - L1PBa LINE L1 -6272 591 1 251 164 49 16 chr6 26257383 26257444 -163022110 - L1MA7 LINE L1 -112 6179 6117 695 283 129 14 chr6 26257457 26258083 -163021471 - L1M4 LINE L1 -2502 3644 2947 211 297 161 17 chr6 26259880 26259998 -163019556 - MIR SINE MIR -40 222 88 23 0 8 0 chr6 26260148 26260208 -163019346 + AT_rich Low_complexity Low_complexity 1 23 0 7241 15 0 0 chr6 26260260 26261127 -163018427 - L1PA2 LINE L1 -2 6153 5287 335 333 64 40 chr6 26261181 26261430 -163018124 - L1MC4 LINE L1 -141 7901 7647 520 325 177 20 chr6 26261434 26261739 -163017815 - L2 LINE L2 -41 3272 2920 819 201 49 22 chr6 26262653 26262837 -163016717 - MER5A DNA MER1_type 0 189 1 3484 117 13 19 chr6 26263878 26264408 -163015146 + MER1A DNA MER1_type 1 527 0 2241 94 7 10 chr6 26264448 26264755 -163014799 + AluY SINE Alu 3 308 -3 568 254 48 0 chr6 26265031 26265196 -163014358 + MER112 DNA MER1_type 81 253 -7 422 297 128 0 chr6 26266055 26266252 -163013302 - MIR SINE MIR 0 262 41 279 79 0 0 chr6 26267094 26267132 -163012422 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1489 163 30 54 chr6 26267158 26267490 -163012064 + MLT2B3 LTR ERVL 223 546 -8 2111 86 4 7 chr6 26267868 26268146 -163011408 + AluSq SINE Alu 37 313 0 1854 243 34 11 chr6 26270748 26271366 -163008188 + L1M4 LINE L1 4215 4846 -1300 203 357 42 14 chr6 26271392 26271535 -163008019 - L3b LINE CR1 -173 1410 1264 268 345 12 0 chr6 26271569 26271653 -163007901 - MIR3 SINE MIR -46 162 78 198 0 0 0 chr6 26271680 26271702 -163007852 + (ACTG)n Simple_repeat Simple_repeat 1 22 0 4493 133 16 29 chr6 26271797 26272587 -163006967 - L1MA5 LINE L1 -6 6294 5515 198 0 0 0 chr6 26272874 26272896 -163006658 + (A)n Simple_repeat Simple_repeat 1 22 0 5872 61 9 0 chr6 26272931 26273681 -163005873 - L1PA8 LINE L1 -3 6169 5413 709 354 100 31 chr6 26274041 26274968 -163004586 - L2 LINE L2 -58 3255 2255 566 335 131 44 chr6 26275073 26275152 -163004402 + L3 LINE CR1 62 133 -1444 2253 109 7 0 chr6 26275152 26275456 -163004098 + AluSc SINE Alu 1 306 -3 566 335 131 44 chr6 26275456 26275833 -163003721 + L3 LINE CR1 133 558 -1019 473 176 5 186 chr6 26275879 26276089 -163003465 + MER20 DNA MER1_type 43 214 -5 216 333 0 0 chr6 26276324 26276387 -163003167 + MIR3 SINE MIR 101 163 -45 1356 241 126 28 chr6 26276390 26276850 -163002704 + MLT1D LTR MaLR 1 505 0 4111 217 27 80 chr6 26276850 26276953 -163002601 + MLT1D-int LTR MaLR 1 108 -1263 942 230 178 43 chr6 26276953 26277397 -163002157 + MLT1D LTR MaLR 1 504 -1 4111 217 27 80 chr6 26277397 26278695 -163000859 + MLT1D-int LTR MaLR 108 1217 -154 863 199 124 42 chr6 26278701 26279007 -163000547 + MLT1C LTR MaLR 135 465 -2 943 292 147 48 chr6 26279055 26279682 -162999872 + L3 LINE CR1 887 1575 -2 791 199 0 0 chr6 26280471 26280617 -162998937 + AluJb SINE Alu 1 146 -166 180 0 0 0 chr6 26280681 26280701 -162998853 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2061 141 7 10 chr6 26281188 26281492 -162998062 + AluSx SINE Alu 1 303 -9 1965 150 0 3 chr6 26282040 26282346 -162997208 + AluJb SINE Alu 1 305 -7 926 227 12 16 chr6 26282527 26282778 -162996776 + MER76 LTR ERV 1 250 -438 906 228 25 40 chr6 26282846 26283122 -162996432 + MER76 LTR ERV 384 655 -33 332 359 61 0 chr6 26283758 26283889 -162995665 - MIR SINE MIR -111 151 13 11961 183 15 36 chr6 26283995 26284046 -162995508 - L1PB3 LINE L1 -313 5841 5790 315 0 0 0 chr6 26284046 26284081 -162995473 + (TG)n Simple_repeat Simple_repeat 2 36 0 11961 183 15 36 chr6 26284081 26285122 -162994432 - L1PB3 LINE L1 -364 5790 4728 279 78 98 0 chr6 26285122 26285173 -162994381 + MADE1 DNA Mariner 1 56 -24 11961 183 15 36 chr6 26285173 26285973 -162993581 - L1PB3 LINE L1 -1426 4728 3912 2425 87 0 0 chr6 26285973 26286284 -162993270 - AluY SINE Alu 0 311 1 11961 183 15 36 chr6 26286284 26287947 -162991607 - L1PB3 LINE L1 -2242 3912 2313 258 32 0 0 chr6 26288009 26288040 -162991514 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr6 26289209 26289234 -162990320 + (A)n Simple_repeat Simple_repeat 1 25 0 2596 50 0 0 chr6 26289234 26289534 -162990020 + AluY SINE Alu 1 300 -11 839 251 0 0 chr6 26290155 26290326 -162989228 + MER45A DNA AcHobo 1 171 -7 509 236 149 9 chr6 26290437 26290748 -162988806 + MLT1I LTR MaLR 1 409 0 2265 85 4 0 chr6 26292049 26292353 -162987201 + AluSx SINE Alu 3 307 0 193 212 0 0 chr6 26292860 26292893 -162986661 + MIR SINE MIR 1 33 -229 1854 126 32 0 chr6 26292896 26293198 -162986356 + AluSp SINE Alu 1 311 0 42488 35 0 2 chr6 26293355 26299514 -162980040 + L1PA3 LINE L1 6 6152 -3 182 37 37 0 chr6 26300845 26300872 -162978682 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 294 357 91 66 chr6 26300936 26301345 -162978209 - L2 LINE L2 -50 3222 2804 1808 144 0 11 chr6 26301684 26301994 -162977560 + AluSx SINE Alu 1 307 0 1980 202 26 32 chr6 26302810 26303276 -162976278 + MLT1C LTR MaLR 5 467 0 1870 117 8 11 chr6 26303565 26303830 -162975724 + AluSx SINE Alu 39 302 -10 206 213 43 0 chr6 26303945 26303992 -162975562 + GA-rich Low_complexity Low_complexity 4 52 0 209 305 170 7 chr6 26304443 26304584 -162974970 - MIR3 SINE MIR -6 202 39 4867 124 6 36 chr6 26304600 26304864 -162974690 - L1PA16 LINE L1 -1 6165 5895 1977 127 18 3 chr6 26304864 26305147 -162974407 + AluSx SINE Alu 1 287 -25 4867 124 6 36 chr6 26305147 26305721 -162973833 - L1PA16 LINE L1 -271 5895 5352 180 0 0 0 chr6 26305721 26305741 -162973813 + (T)n Simple_repeat Simple_repeat 1 20 0 1950 123 21 7 chr6 26305896 26306180 -162973374 - AluSq SINE Alu -25 288 1 3525 196 85 18 chr6 26306180 26306845 -162972709 - L1PA16 LINE L1 -784 5362 4620 2608 62 0 0 chr6 26306845 26307152 -162972402 + AluY SINE Alu 1 307 -4 3525 196 85 18 chr6 26307152 26307378 -162972176 - L1PA16 LINE L1 -1526 4620 4411 237 33 0 0 chr6 26307890 26307920 -162971634 + (CA)n Simple_repeat Simple_repeat 1 30 0 293 270 22 0 chr6 26307993 26308082 -162971472 + MIR SINE MIR 172 262 0 285 336 90 0 chr6 26308216 26308338 -162971216 - MIR SINE MIR -89 173 41 184 284 12 49 chr6 26308423 26308504 -162971050 - L2 LINE L2 -181 3091 3014 189 294 92 55 chr6 26308646 26308755 -162970799 - L2 LINE L2 -1 3312 3200 1157 207 46 65 chr6 26308866 26309238 -162970316 + MLT1A1 LTR MaLR 1 365 0 518 286 49 27 chr6 26309887 26310072 -162969482 - MIR SINE MIR -44 218 30 242 290 0 16 chr6 26310141 26310211 -162969343 + MIR SINE MIR 41 108 -103 464 147 0 21 chr6 26311177 26311272 -162968282 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 183 42 0 0 chr6 26311290 26311314 -162968240 + (GA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr6 26311575 26311600 -162967954 + AT_rich Low_complexity Low_complexity 1 25 0 315 242 0 0 chr6 26312342 26312408 -162967146 - MIR SINE MIR -63 199 134 3451 107 8 8 chr6 26312770 26313277 -162966277 - MER84 LTR ERV1 0 507 1 604 287 136 16 chr6 26313867 26314494 -162965060 + L1M4 LINE L1 4561 5262 -884 231 209 0 0 chr6 26364617 26364660 -162914894 - L2 LINE L2 -4 3309 3267 293 300 127 0 chr6 26364742 26364852 -162914702 + L2 LINE L2 3149 3272 0 1742 152 27 24 chr6 26365192 26365489 -162914065 + AluJo SINE Alu 6 303 -9 318 132 0 0 chr6 26366697 26366750 -162912804 + (T)n Simple_repeat Simple_repeat 1 53 0 1704 182 18 0 chr6 26367914 26368243 -162911311 - L1PB4 LINE L1 0 6156 5822 282 214 157 0 chr6 26368347 26368417 -162911137 - LTR37A LTR ERV1 -345 81 1 1627 157 47 50 chr6 26368436 26368568 -162910986 - MER31-int LTR ERV1 -727 4209 4078 2413 86 0 0 chr6 26368568 26368869 -162910685 - AluY SINE Alu -10 301 1 1627 157 47 50 chr6 26368869 26369055 -162910499 - MER31-int LTR ERV1 -858 4078 3892 371 191 0 0 chr6 26369063 26369126 -162910428 - Charlie3 DNA MER1_type -25 2685 2623 247 209 0 0 chr6 26369123 26369166 -162910388 - Charlie3 DNA MER1_type -2612 98 56 * 4288 183 50 72 chr6 26369182 26370323 -162909231 - MER31-int LTR ERV1 -1032 3904 2790 2305 92 0 3 chr6 26370323 26370629 -162908925 + AluSq SINE Alu 1 305 -8 4288 183 50 72 chr6 26370629 26370713 -162908841 - MER31-int LTR ERV1 -2146 2790 2706 1374 237 53 16 chr6 26371863 26372411 -162907143 + L1ME3A LINE L1 2635 3202 -2944 6034 132 93 13 chr6 26372605 26373745 -162905809 - Tigger3b DNA MER2_type 0 1231 1 247 239 75 15 chr6 26373754 26373821 -162905733 + Tigger5 DNA MER2_type 8 78 -2245 307 241 228 0 chr6 26373902 26374047 -162905507 + L1ME3A LINE L1 3762 3939 -2207 * 2104 268 85 29 chr6 26374041 26375563 -162903991 + L1ME3A LINE L1 4556 6165 -5 25 65 0 0 chr6 26375564 26375610 -162903944 + AT_rich Low_complexity Low_complexity 1 46 0 237 349 34 48 chr6 26376456 26376602 -162902952 - L2 LINE L2 -2 3270 3127 331 317 192 30 chr6 26376881 26377152 -162902402 - L2 LINE L2 -552 2762 2448 647 167 3 0 chr6 26377221 26377335 -162902219 - LTR12 LTR ERV1 -133 581 67 250 278 11 0 chr6 26377335 26377425 -162902129 - LTR30 LTR ERV1 -79 643 553 1690 83 3 129 chr6 26377426 26377751 -162901803 - LTR12 LTR ERV1 -429 285 2 2740 106 97 5 chr6 26377776 26378210 -162901344 + MER101 LTR ERV1 1 474 0 21 36 0 0 chr6 26379190 26379218 -162900336 + AT_rich Low_complexity Low_complexity 1 28 0 1076 292 51 39 chr6 26380550 26380964 -162898590 + LTR16C LTR ERVL 73 491 0 261 326 0 0 chr6 26380968 26381066 -162898488 + HAL1 LINE L1 1495 1592 -915 12956 154 29 55 chr6 26381076 26384185 -162895369 + L1MA3 LINE L1 17 3815 -3750 913 156 0 0 chr6 26384185 26384326 -162895228 + FLAM_C SINE Alu 1 141 -2 12956 154 29 55 chr6 26384326 26385166 -162894388 + L1MA3 LINE L1 3815 4676 -2889 6425 131 33 4 chr6 26385166 26386624 -162892930 + L1MA3 LINE L1 6216 7724 0 812 304 32 6 chr6 26386636 26386949 -162892605 + HAL1 LINE L1 1583 1903 -604 252 236 0 0 chr6 26386961 26387016 -162892538 + MIR SINE MIR 197 251 -11 418 204 0 21 chr6 26387242 26387335 -162892219 - MER103 DNA DNA -75 91 1 2137 146 0 0 chr6 26387371 26387679 -162891875 + AluSx SINE Alu 1 308 -4 2013 118 0 4 chr6 26387768 26388038 -162891516 - AluSx SINE Alu -43 269 1 194 354 15 0 chr6 26388698 26388763 -162890791 + L2 LINE L2 3206 3271 -1 1968 122 49 0 chr6 26390106 26390433 -162889121 + AluJb SINE Alu 1 341 0 3063 119 14 4 chr6 26391647 26392160 -162887394 + L1P5 LINE L1 5260 5777 -379 292 297 11 0 chr6 26392163 26392254 -162887300 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 192 40 0 0 chr6 26392424 26392449 -162887105 + (GGGTG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 26392673 26392695 -162886859 + AT_rich Low_complexity Low_complexity 1 22 0 364 242 83 125 chr6 26393579 26393855 -162885699 - MIR SINE MIR 0 262 4 529 211 0 0 chr6 26394387 26394482 -162885072 + FLAM_A SINE Alu 1 95 -47 1453 193 3 24 chr6 26394482 26394772 -162884782 + AluJo SINE Alu 26 309 -3 466 333 59 34 chr6 26394858 26395095 -162884459 + MIR SINE MIR 12 254 -8 2112 132 0 13 chr6 26395702 26396005 -162883549 - AluSx SINE Alu -13 299 1 804 194 0 0 chr6 26396509 26396638 -162882916 - FLAM_A SINE Alu -4 129 1 204 40 0 0 chr6 26396649 26396674 -162882880 + (A)n Simple_repeat Simple_repeat 1 25 0 257 250 113 0 chr6 26396997 26397077 -162882477 - MIR SINE MIR -54 208 120 2188 110 13 0 chr6 26397408 26397707 -162881847 - AluSx SINE Alu -9 303 1 442 219 207 39 chr6 26399052 26399308 -162880246 + L2 LINE L2 3015 3313 0 529 241 211 77 chr6 26399350 26399490 -162880064 + L2 LINE L2 2560 2680 -633 2331 82 0 20 chr6 26399490 26399794 -162879760 + AluSg1 SINE Alu 1 298 -11 529 241 211 77 chr6 26399794 26400203 -162879351 + L2 LINE L2 2680 3216 -97 198 103 0 0 chr6 26400203 26400232 -162879322 + (CA)n Simple_repeat Simple_repeat 1 29 0 529 241 211 77 chr6 26400232 26400343 -162879211 + L2 LINE L2 3216 3311 -2 300 292 117 50 chr6 26400490 26400730 -162878824 + L2 LINE L2 3013 3268 -45 2010 151 0 0 chr6 26401475 26401773 -162877781 + AluJb SINE Alu 1 298 -14 289 338 112 39 chr6 26401832 26402314 -162877240 + L2 LINE L2 2288 2804 -510 589 158 0 0 chr6 26402511 26402612 -162876942 - AluSg/x SINE Alu -3 306 206 346 319 76 19 chr6 26402621 26402778 -162876776 + MIR SINE MIR 89 254 -8 189 268 0 0 chr6 26403511 26403552 -162876002 + L2 LINE L2 3231 3271 -1 2870 6 0 0 chr6 26405146 26405457 -162874097 - AluYa5 SINE Alu 0 311 1 2810 13 0 0 chr6 26406642 26406949 -162872605 - AluYa5 SINE Alu -4 307 1 791 182 0 0 chr6 26407751 26407872 -162871682 + FLAM_A SINE Alu 1 121 -12 1066 187 4 52 chr6 26407880 26408110 -162871444 - MER20 DNA MER1_type 0 219 1 746 110 110 17 chr6 26408273 26408391 -162871163 - FLAM_C SINE Alu -4 129 1 14120 183 12 0 chr6 26408651 26409242 -162870312 + L1PA13 LINE L1 2438 3020 -3143 1880 150 17 7 chr6 26409242 26409529 -162870025 + AluJb SINE Alu 3 292 -20 14120 183 12 0 chr6 26409529 26412644 -162866910 + L1PA13 LINE L1 3020 6162 -1 419 298 93 24 chr6 26412864 26413112 -162866442 + L1MC/D LINE L1 4936 5200 -946 2220 137 12 9 chr6 26413168 26413504 -162866050 - MER1B DNA MER1_type 0 337 1 872 291 20 12 chr6 26413592 26413843 -162865711 + MIR SINE MIR 1 253 -9 493 278 146 9 chr6 26413944 26414156 -162865398 + L1MC/D LINE L1 5513 5753 -2055 3144 118 29 4 chr6 26414156 26414646 -162864908 + L1PA16 LINE L1 5648 6149 -17 308 65 43 0 chr6 26414693 26414739 -162864815 + LTR54 LTR ERV1 402 449 -61 2173 119 9 25 chr6 26414796 26415114 -162864440 + AluSq SINE Alu 1 313 0 1545 178 44 30 chr6 26415274 26415572 -162863982 + AluJb SINE Alu 3 304 -8 2533 53 0 0 chr6 26416252 26416556 -162862998 + AluY SINE Alu 1 304 -7 531 222 106 48 chr6 26416628 26416817 -162862737 - MIR SINE MIR 0 262 63 390 355 16 0 chr6 26417644 26417768 -162861786 - L2 LINE L2 -4 3268 3143 25 0 0 0 chr6 26417787 26417812 -162861742 + AT_rich Low_complexity Low_complexity 1 25 0 2522 93 0 0 chr6 26418362 26418672 -162860882 - AluSx SINE Alu -2 310 1 629 297 101 14 chr6 26418701 26418997 -162860557 + L3 LINE CR1 1141 1462 -115 264 241 0 0 chr6 26419191 26419245 -162860309 - L2 LINE L2 -86 3186 3133 385 331 58 46 chr6 26419573 26419833 -162859721 + MLT1K LTR MaLR 129 391 -197 1804 145 21 28 chr6 26421962 26422251 -162857303 + AluJo SINE Alu 1 287 -25 2025 163 0 0 chr6 26422752 26423058 -162856496 + AluSx SINE Alu 1 306 -6 626 286 83 14 chr6 26423382 26423629 -162855925 + MIR SINE MIR 2 262 0 2004 140 3 0 chr6 26424987 26425273 -162854281 + AluSx SINE Alu 1 287 -25 291 261 137 76 chr6 26425380 26426061 -162853493 + L1MEd LINE L1 300 1021 -5098 615 124 105 0 chr6 26426069 26426174 -162853380 - AluSg/x SINE Alu -3 309 194 21 0 0 0 chr6 26426373 26426394 -162853160 + AT_rich Low_complexity Low_complexity 1 21 0 2498 87 0 0 chr6 26426549 26426861 -162852693 - AluSx SINE Alu 0 312 1 347 108 0 302 chr6 26427248 26427377 -162852177 + FRAM SINE Alu 56 145 -21 183 146 0 0 chr6 26427383 26427424 -162852130 + (TA)n Simple_repeat Simple_repeat 1 41 0 316 267 100 86 chr6 26427770 26427867 -162851687 + MIR SINE MIR 2 96 -166 2298 105 3 16 chr6 26427867 26428182 -162851372 + AluSq SINE Alu 1 311 -2 316 267 100 86 chr6 26428182 26428294 -162851260 + MIR SINE MIR 96 214 -48 447 322 43 43 chr6 26428369 26428577 -162850977 + MIR SINE MIR 53 260 -2 194 224 35 0 chr6 26431727 26431785 -162847769 + CT-rich Low_complexity Low_complexity 3 62 0 4181 138 5 1 chr6 26431799 26432472 -162847082 - L1PA16 LINE L1 -15 6151 5477 995 188 0 24 chr6 26432493 26432701 -162846853 - L1PA15 LINE L1 -7 6158 5956 3576 186 155 17 chr6 26432701 26432850 -162846704 - L1PA16 LINE L1 -695 5471 5344 2148 134 3 0 chr6 26432850 26433149 -162846405 - AluSq SINE Alu -13 300 1 3576 186 155 17 chr6 26433149 26434499 -162845055 - L1PA16 LINE L1 -822 5344 3720 465 314 162 34 chr6 26434820 26435228 -162844326 - L3 LINE CR1 -729 848 389 404 384 42 3 chr6 26435176 26435507 -162844047 + L2 LINE L2 2435 2778 -536 * 341 320 102 87 chr6 26435697 26435972 -162843582 + L2 LINE L2 2989 3267 -5 180 77 0 0 chr6 26437052 26437078 -162842476 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 190 265 0 0 chr6 26437082 26437131 -162842423 - MIR SINE MIR -5 257 209 271 333 101 0 chr6 26437283 26437382 -162842172 + MIR3 SINE MIR 90 198 -10 306 73 0 0 chr6 26437831 26437872 -162841682 + (TG)n Simple_repeat Simple_repeat 2 42 0 181 323 108 0 chr6 26438565 26438658 -162840896 - L2 LINE L2 -41 3272 3170 590 280 202 27 chr6 26439119 26439204 -162840350 + L2 LINE L2 2919 2988 -325 1819 156 3 11 chr6 26439204 26439517 -162840037 - AluJo SINE Alu 0 311 1 590 280 202 27 chr6 26439517 26439762 -162839792 + L2 LINE L2 2988 3308 -5 1815 212 60 19 chr6 26440325 26440810 -162838744 + MLT1D LTR MaLR 1 505 0 454 316 153 26 chr6 26442886 26443342 -162836212 + L2 LINE L2 2241 2754 -560 243 307 40 0 chr6 26443611 26443686 -162835868 + L2 LINE L2 3152 3229 -43 219 289 77 0 chr6 26444918 26444970 -162834584 - L2 LINE L2 -48 3224 3169 186 277 0 84 chr6 26445103 26445186 -162834368 - L2 LINE L2 -177 3095 3020 360 119 0 0 chr6 26445619 26445678 -162833876 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 349 313 112 0 chr6 26448054 26448188 -162831366 + MIR SINE MIR 34 182 -80 1345 144 111 78 chr6 26448786 26448950 -162830604 + THE1C LTR MaLR 1 158 -217 693 93 0 0 chr6 26448950 26449057 -162830497 + (CTCG)n Simple_repeat Simple_repeat 2 108 0 1345 144 111 78 chr6 26449057 26449252 -162830302 + THE1C LTR MaLR 158 372 -3 2831 182 64 49 chr6 26449392 26450112 -162829442 - MER45B DNA AcHobo 0 1040 310 907 193 25 35 chr6 26450121 26450323 -162829231 - MER45B DNA AcHobo -838 202 3 304 252 89 49 chr6 26450323 26450445 -162829109 + MER112 DNA MER1_type 128 254 -6 477 338 152 0 chr6 26450456 26450666 -162828888 + MIR SINE MIR 20 261 -1 25 0 0 0 chr6 26451124 26451149 -162828405 + AT_rich Low_complexity Low_complexity 1 25 0 1609 192 20 3 chr6 26451149 26451446 -162828108 + AluJo SINE Alu 1 302 -10 647 347 133 25 chr6 26453364 26454053 -162825501 + L2 LINE L2 1752 2515 -799 328 369 92 10 chr6 26454604 26454810 -162824744 + L2 LINE L2 2836 3058 -214 181 279 59 15 chr6 26454942 26455010 -162824544 + L2 LINE L2 3186 3256 -16 1916 142 21 21 chr6 26457671 26458008 -162821546 - MER1B DNA MER1_type -1 338 2 2199 184 29 45 chr6 26458037 26458549 -162821005 - MLT1D LTR MaLR 0 505 2 1892 323 131 22 chr6 26458764 26460096 -162819458 - L2 LINE L2 -50 3263 1787 2589 62 3 3 chr6 26461266 26461575 -162817979 + AluSx SINE Alu 1 309 -3 421 273 131 21 chr6 26462504 26462646 -162816908 + L1ME4a LINE L1 5804 5929 -192 438 20 0 0 chr6 26462646 26462697 -162816857 + (GA)n Simple_repeat Simple_repeat 1 51 0 421 273 131 21 chr6 26462697 26462836 -162816718 + L1ME4a LINE L1 5929 6116 -5 263 104 21 0 chr6 26463545 26463593 -162815961 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 319 378 13 42 chr6 26463884 26464122 -162815432 + L3b LINE CR1 1326 1556 -27 317 217 217 26 chr6 26464122 26464274 -162815280 + L3b LINE CR1 1201 1381 -202 29068 116 14 58 chr6 26465324 26471742 -162807812 - L1PA7 LINE L1 -13 6141 13 367 278 37 0 chr6 26473119 26473227 -162806327 - MIR SINE MIR 0 262 151 1823 155 0 14 chr6 26473229 26473525 -162806029 + AluSx SINE Alu 1 292 -20 213 121 0 0 chr6 26473549 26473582 -162805972 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 271 215 19 47 chr6 26473721 26473828 -162805726 + HAL1 LINE L1 2029 2132 -375 1850 196 63 42 chr6 26474044 26474189 -162805365 + LTR40a LTR ERVL 3 143 -376 940 231 33 0 chr6 26474189 26474401 -162805153 + MER20 DNA MER1_type 1 219 0 1850 196 63 42 chr6 26474401 26474489 -162805065 + LTR40a LTR ERVL 143 228 -291 438 148 11 0 chr6 26474489 26474577 -162804977 + L1MB4 LINE L1 6088 6176 -4 1850 196 63 42 chr6 26474577 26474848 -162804706 + LTR40a LTR ERVL 228 519 0 354 281 70 47 chr6 26475685 26475856 -162803698 - HAL1 LINE L1 -1 2506 2332 45 45 0 0 chr6 26475918 26475984 -162803570 + AT_rich Low_complexity Low_complexity 1 66 0 3797 253 111 48 chr6 26476126 26478259 -162801295 - HAL1 LINE L1 -237 2270 4 1329 25 0 6 chr6 26479419 26479578 -162799976 - L1PA5 LINE L1 -8 6146 5989 465 35 0 0 chr6 26479578 26479636 -162799918 + L1PA4 LINE L1 5890 5947 -208 31 0 0 0 chr6 26481386 26481417 -162798137 + AT_rich Low_complexity Low_complexity 1 31 0 207 301 36 24 chr6 26481733 26481816 -162797738 + MER5A DNA MER1_type 11 94 -95 185 321 36 12 chr6 26481783 26481867 -162797687 - MER5A DNA MER1_type -87 102 17 * 532 288 42 42 chr6 26481969 26482181 -162797373 + MIR SINE MIR 50 261 -1 951 126 77 13 chr6 26482880 26483164 -162796390 - MLT1B LTR MaLR 0 390 7 458 267 52 7 chr6 26483518 26483653 -162795901 + MIR SINE MIR 71 211 -51 180 311 0 0 chr6 26483953 26483998 -162795556 + L3 LINE CR1 891 935 -642 444 37 0 0 chr6 26484216 26484270 -162795284 + (TG)n Simple_repeat Simple_repeat 1 54 0 2078 117 16 10 chr6 26485353 26485660 -162793894 - AluSx SINE Alu -3 309 1 288 356 73 26 chr6 26485794 26485985 -162793569 + MIR SINE MIR 28 227 -35 4369 184 41 13 chr6 26486622 26488460 -162791094 - L1MB3 LINE L1 0 6183 4296 212 290 161 11 chr6 26489208 26489335 -162790219 - MIR SINE MIR -23 185 45 2323 80 0 13 chr6 26489368 26489680 -162789874 + AluY SINE Alu 1 308 -3 371 285 244 0 chr6 26489780 26489952 -162789602 - MIR SINE MIR -31 231 18 2448 73 0 3 chr6 26489984 26490285 -162789269 - AluY SINE Alu -11 300 1 2448 77 3 3 chr6 26490374 26490685 -162788869 - AluY SINE Alu 0 311 1 613 215 224 5 chr6 26490979 26491184 -162788370 + MIR SINE MIR 10 259 -3 2628 129 42 4 chr6 26492997 26493454 -162786100 + L1MA8 LINE L1 5808 6281 -10 1414 191 14 24 chr6 26493646 26493939 -162785615 - AluJo SINE Alu -22 290 1 23 0 0 0 chr6 26495004 26495027 -162784527 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr6 26496470 26496519 -162783035 + AT_rich Low_complexity Low_complexity 1 49 0 2024 101 36 4 chr6 26496928 26497236 -162782318 - AluSq SINE Alu 0 319 3 462 288 120 20 chr6 26501208 26501445 -162778109 - MIR SINE MIR 0 262 1 261 226 0 48 chr6 26501550 26501612 -162777942 + L2 LINE L2 3246 3304 -9 2156 135 0 0 chr6 26501749 26502052 -162777502 + AluSx SINE Alu 1 303 -9 267 254 0 0 chr6 26502272 26502335 -162777219 - L1MC4a LINE L1 -1909 5899 5837 716 156 0 33 chr6 26502356 26502478 -162777076 - FRAM SINE Alu -14 162 45 2178 122 3 6 chr6 26503293 26503605 -162775949 + AluSq SINE Alu 1 311 -2 558 79 0 0 chr6 26504043 26504119 -162775435 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 609 286 62 37 chr6 26505862 26506376 -162773178 + L1MCc LINE L1 1116 1796 -4889 1587 247 81 34 chr6 26506381 26506606 -162772948 + L1MCc LINE L1 2335 2548 -4574 2086 98 4 4 chr6 26506606 26506883 -162772671 + AluSg SINE Alu 18 294 -16 1587 247 81 34 chr6 26506883 26507383 -162772171 + L1MCc LINE L1 2548 3094 -4028 791 168 0 40 chr6 26507390 26507539 -162772015 + FLAM_C SINE Alu 1 143 0 333 320 44 61 chr6 26507994 26508222 -162771332 + L2 LINE L2 2070 2293 -1021 199 298 85 0 chr6 26509010 26509104 -162770450 - MIR SINE MIR -7 255 154 246 316 164 6 chr6 26509152 26509323 -162770231 - MIR SINE MIR -56 206 9 2356 135 41 21 chr6 26509426 26509862 -162769692 + LTR7 LTR ERV1 1 445 -5 28 0 0 0 chr6 26509991 26510019 -162769535 + AT_rich Low_complexity Low_complexity 1 28 0 251 323 79 8 chr6 26511335 26511462 -162768092 - L2 LINE L2 -3 3310 3175 211 301 131 20 chr6 26511500 26511653 -162767901 + MIR3 SINE MIR 24 193 -15 1789 182 3 16 chr6 26511734 26512047 -162767507 + AluJo SINE Alu 1 309 -3 22 0 0 0 chr6 26512716 26512738 -162766816 + AT_rich Low_complexity Low_complexity 1 22 0 474 351 7 0 chr6 26513031 26513182 -162766372 - L2 LINE L2 -2 3311 3160 1135 306 184 14 chr6 26513207 26514037 -162765517 - L2 LINE L2 -412 2902 1932 463 303 155 28 chr6 26514151 26514544 -162765010 + L1ME4a LINE L1 5528 5970 -151 209 280 0 0 chr6 26514602 26514652 -162764902 + (CATA)n Simple_repeat Simple_repeat 3 52 0 24 103 0 0 chr6 26514718 26514805 -162764749 + AT_rich Low_complexity Low_complexity 1 87 0 2131 251 38 45 chr6 26514806 26515915 -162763639 + L1MC4 LINE L1 4766 5396 -750 5330 136 10 27 chr6 26515952 26516321 -162763233 - L1PB4 LINE L1 -8 6148 5774 378 0 0 0 chr6 26516321 26516363 -162763191 + (TG)n Simple_repeat Simple_repeat 2 43 0 5330 136 10 27 chr6 26516363 26517051 -162762503 - L1PB4 LINE L1 -382 5774 5106 330 181 0 0 chr6 26517071 26517143 -162762411 - L1PB4 LINE L1 -1013 5133 5062 * 4153 214 47 68 chr6 26517139 26517906 -162761648 + L1MC4 LINE L1 5847 6629 -1413 2119 120 7 0 chr6 26517906 26518189 -162761365 - AluSx SINE Alu -27 285 1 4153 214 47 68 chr6 26518189 26519030 -162760524 + L1MC4 LINE L1 6629 7486 -556 3172 190 48 10 chr6 26519030 26519714 -162759840 + MER67C LTR ERV1 1 710 0 4153 214 47 68 chr6 26519714 26519772 -162759782 + L1MC4 LINE L1 7486 7464 -578 5719 64 16 11 chr6 26519772 26520534 -162759020 + MER4E LTR ERV1 1 766 0 4153 214 47 68 chr6 26520534 26520621 -162758933 + L1MC4 LINE L1 7463 7550 -492 721 217 32 19 chr6 26520621 26520778 -162758776 + AluSg/x SINE Alu 137 295 -17 255 74 246 0 chr6 26520778 26520830 -162758724 + L1MD3 LINE L1 7461 7701 -280 1011 221 60 15 chr6 26520873 26521140 -162758414 + L1MC4a LINE L1 7530 7808 0 1526 226 3 0 chr6 26522159 26522468 -162757086 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr6 26523347 26523369 -162756185 + AT_rich Low_complexity Low_complexity 1 22 0 748 179 0 12 chr6 26523634 26523802 -162755752 + GA-rich Low_complexity Low_complexity 3 168 0 1882 152 3 7 chr6 26524136 26524432 -162755122 + AluJb SINE Alu 4 298 -14 208 297 117 27 chr6 26524506 26524617 -162754937 + L2 LINE L2 3142 3262 -10 297 0 0 0 chr6 26525011 26525044 -162754510 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2225 88 0 3 chr6 26525047 26525331 -162754223 - AluSq SINE Alu -29 284 2 206 356 14 14 chr6 26526559 26526632 -162752922 - MIR SINE MIR -186 76 4 22 0 0 0 chr6 26527630 26527652 -162751902 + AT_rich Low_complexity Low_complexity 1 22 0 254 374 27 32 chr6 26528234 26528421 -162751133 + L3b LINE CR1 1106 1291 -292 858 166 0 14 chr6 26528856 26528995 -162750559 - AluJb SINE Alu -13 299 163 21 0 0 0 chr6 26529203 26529224 -162750330 + AT_rich Low_complexity Low_complexity 1 21 0 1006 289 109 29 chr6 26529762 26530313 -162749241 + MLT1G1 LTR MaLR 1 595 0 561 342 27 78 chr6 26530424 26530833 -162748721 - L2 LINE L2 0 3272 2885 303 356 38 0 chr6 26530833 26530965 -162748589 - MLT1G1 LTR MaLR -405 190 54 396 310 124 54 chr6 26530968 26531020 -162748534 - L2 LINE L2 -458 2856 2809 537 299 75 17 chr6 26531020 26531261 -162748293 + MER112 DNA MER1_type 2 256 0 396 310 124 54 chr6 26531261 26531669 -162747885 - L2 LINE L2 -505 2809 2364 1154 161 62 21 chr6 26532018 26532261 -162747293 - THE1C LTR MaLR -122 253 1 483 282 0 103 chr6 26532437 26532671 -162746883 + LTR67 LTR ERVL 348 557 0 399 296 26 20 chr6 26533148 26533300 -162746254 - MIR SINE MIR -12 250 98 24 0 0 0 chr6 26533514 26533538 -162746016 + AT_rich Low_complexity Low_complexity 1 24 0 2171 116 0 13 chr6 26533819 26534122 -162745432 + AluSx SINE Alu 1 299 -13 451 205 45 36 chr6 26534411 26534523 -162745031 + MIR SINE MIR 120 232 -30 615 316 128 67 chr6 26534675 26534968 -162744586 + L2 LINE L2 2391 2665 -607 2182 102 7 3 chr6 26534968 26535252 -162744302 - AluSq SINE Alu -27 286 2 615 316 128 67 chr6 26535252 26535781 -162743773 + L2 LINE L2 2665 3272 0 366 381 12 12 chr6 26536421 26536581 -162742973 + L2 LINE L2 2904 3063 -209 21 36 0 0 chr6 26536620 26536648 -162742906 + AT_rich Low_complexity Low_complexity 1 28 0 2091 136 0 0 chr6 26537041 26537335 -162742219 - AluSx SINE Alu -18 294 1 21 0 0 0 chr6 26537821 26537842 -162741712 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr6 26538258 26538283 -162741271 + (CA)n Simple_repeat Simple_repeat 2 26 0 2136 97 20 10 chr6 26539357 26539657 -162739897 - AluY SINE Alu -8 303 1 1821 144 50 19 chr6 26540146 26540506 -162739048 - L1MA7 LINE L1 -1 6290 5920 573 152 0 0 chr6 26540514 26540613 -162738941 + L1MA7 LINE L1 5802 5900 -400 1776 129 96 0 chr6 26542206 26542478 -162737076 + AluSx SINE Alu 1 298 -14 2103 116 10 3 chr6 26542783 26543076 -162736478 + AluSx SINE Alu 3 297 -15 236 238 148 40 chr6 26543620 26543703 -162735851 + L2 LINE L2 3198 3295 -18 1309 185 108 16 chr6 26543703 26544017 -162735537 - MER2 DNA MER2_type 0 344 2 236 238 148 40 chr6 26544017 26544034 -162735520 + L2 LINE L2 3295 3309 -4 259 226 48 0 chr6 26544371 26544433 -162735121 - LTR65 LTR ERV1 -6 663 599 574 253 25 0 chr6 26544700 26544858 -162734696 - LTR65 LTR ERV1 -505 164 3 299 337 61 25 chr6 26545074 26545237 -162734317 + L2 LINE L2 3078 3246 -26 2254 89 0 16 chr6 26548131 26548434 -162731120 + AluSg SINE Alu 1 298 -12 25 31 0 0 chr6 26549984 26550016 -162729538 + AT_rich Low_complexity Low_complexity 1 32 0 240 312 153 37 chr6 26550296 26550485 -162729069 + L3b LINE CR1 1353 1563 -20 24 77 0 0 chr6 26550645 26550697 -162728857 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 26551715 26551736 -162727818 + AT_rich Low_complexity Low_complexity 1 21 0 297 304 54 0 chr6 26551816 26551928 -162727626 - MIR SINE MIR -72 190 73 2176 167 98 23 chr6 26552334 26552866 -162726688 + L1MB7 LINE L1 5602 6173 -11 194 310 126 11 chr6 26552982 26553069 -162726485 + L2 LINE L2 3112 3208 -64 186 43 0 0 chr6 26554435 26554458 -162725096 + (CA)n Simple_repeat Simple_repeat 2 24 0 647 177 0 24 chr6 26554638 26554762 -162724792 + FLAM_C SINE Alu 1 121 -22 1025 138 80 62 chr6 26554771 26554996 -162724558 + AluJo SINE Alu 59 287 -25 708 66 76 7 chr6 26555001 26555290 -162724264 + (TA)n Simple_repeat Simple_repeat 1 309 0 187 92 77 0 chr6 26555301 26555366 -162724188 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 * 444 58 76 29 chr6 26555352 26555523 -162724031 + (TA)n Simple_repeat Simple_repeat 2 180 0 43 56 0 0 chr6 26555523 26555594 -162723960 + AT_rich Low_complexity Low_complexity 1 71 0 598 59 92 6 chr6 26555713 26556209 -162723345 + (TA)n Simple_repeat Simple_repeat 1 538 0 695 184 0 0 chr6 26556230 26556344 -162723210 + FLAM_C SINE Alu 3 116 -17 192 77 0 0 chr6 26556344 26556370 -162723184 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 26556614 26556636 -162722918 + GC_rich Low_complexity Low_complexity 1 22 0 260 227 133 0 chr6 26556923 26556998 -162722556 - L2 LINE L2 0 3272 3188 526 265 148 16 chr6 26557369 26557558 -162721996 - MIR SINE MIR 0 262 49 1875 104 4 4 chr6 26557776 26558055 -162721499 + L1PA14 LINE L1 5883 6161 0 569 182 144 8 chr6 26558295 26558427 -162721127 - MER45A DNA AcHobo -25 153 4 228 312 13 0 chr6 26558438 26558515 -162721039 + L2 LINE L2 2227 2304 -1010 1246 207 91 0 chr6 26558515 26558824 -162720730 + MER63B DNA MER1_type 4 340 -96 206 225 28 0 chr6 26558849 26558991 -162720563 + (TTTA)n Simple_repeat Simple_repeat 3 148 0 400 190 23 6 chr6 26559004 26559178 -162720376 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 313 209 154 9 chr6 26559188 26559298 -162720256 + MER63B DNA MER1_type 304 429 -5 204 387 70 7 chr6 26559304 26559446 -162720108 + L2 LINE L2 2298 2448 -866 1807 169 0 23 chr6 26559857 26560165 -162719389 + AluJb SINE Alu 1 301 -11 433 368 86 23 chr6 26560314 26560665 -162718889 + L2 LINE L2 2494 2866 -448 187 296 8 112 chr6 26560725 26560850 -162718704 + L2 LINE L2 2966 3077 -195 1021 198 0 0 chr6 26560910 26561082 -162718472 - FAM SINE Alu -3 172 1 419 345 0 0 chr6 26561175 26561291 -162718263 + L2 LINE L2 3156 3271 -1 2104 138 7 0 chr6 26561940 26562237 -162717317 - AluSq SINE Alu -14 299 1 631 160 0 9 chr6 26562294 26562400 -162717154 + U6 snRNA snRNA 3 107 0 2122 108 0 7 chr6 26562442 26562763 -162716791 - AluSx SINE Alu 0 319 1 207 246 0 49 chr6 26563173 26563234 -162716320 + L2 LINE L2 3215 3272 0 883 304 53 91 chr6 26563397 26563495 -162716059 + L1MEd LINE L1 3 103 -6207 1624 165 53 11 chr6 26563495 26563780 -162715774 - AluJo SINE Alu -15 297 1 883 304 53 91 chr6 26563780 26565297 -162714257 + L1MEd LINE L1 103 1584 -4726 2181 116 33 0 chr6 26565507 26565809 -162713745 + AluSx SINE Alu 1 312 0 2270 89 3 3 chr6 26565972 26566263 -162713291 + AluSx SINE Alu 3 293 -19 1801 163 3 13 chr6 26566402 26566703 -162712851 + AluJb SINE Alu 1 298 -14 261 239 92 0 chr6 26566713 26566822 -162712732 + L1MEd LINE L1 2117 2235 -3894 1217 152 41 75 chr6 26566839 26567069 -162712485 + L1MC/D LINE L1 5443 5612 -559 1953 162 0 7 chr6 26567069 26567372 -162712182 + AluJb SINE Alu 1 301 -11 1217 152 41 75 chr6 26567372 26567585 -162711969 + L1MC/D LINE L1 5612 5831 -340 2271 95 0 3 chr6 26567654 26567950 -162711604 + AluSx SINE Alu 18 312 0 1719 171 7 14 chr6 26567963 26568256 -162711298 + AluJb SINE Alu 1 291 -21 7390 29 7 8 chr6 26568256 26568781 -162710773 + L1PA4 LINE L1 5132 5657 -498 2396 48 7 0 chr6 26568781 26569072 -162710482 + AluY SINE Alu 1 293 -18 7390 29 7 8 chr6 26569072 26569570 -162709984 + L1PA4 LINE L1 5657 6154 -1 1417 264 60 10 chr6 26569572 26570177 -162709377 + L1ME3A LINE L1 5317 5951 -219 182 121 0 91 chr6 26570479 26570522 -162709032 + (GGAA)n Simple_repeat Simple_repeat 2 39 -22 2480 67 0 0 chr6 26570522 26570820 -162708734 + AluY SINE Alu 1 298 -13 182 121 0 91 chr6 26570820 26570842 -162708712 + (GGAA)n Simple_repeat Simple_repeat 39 61 0 2085 107 6 38 chr6 26570927 26571245 -162708309 + AluSx SINE Alu 1 308 -4 493 309 236 10 chr6 26572156 26572444 -162707110 + L2 LINE L2 2943 3295 -18 297 151 0 0 chr6 26572501 26572554 -162707000 + GA-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 26573386 26573407 -162706147 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr6 26573456 26573478 -162706076 + AT_rich Low_complexity Low_complexity 1 22 0 423 268 174 37 chr6 26574225 26574353 -162705201 + MIR SINE MIR 47 211 -51 2228 103 0 3 chr6 26574353 26574645 -162704909 + AluSq SINE Alu 1 291 -22 423 268 174 37 chr6 26574645 26574706 -162704848 + MIR SINE MIR 211 262 0 271 336 35 9 chr6 26575090 26575203 -162704351 + LTR16A1 LTR ERVL 187 302 -155 313 220 33 11 chr6 26575229 26575320 -162704234 + LTR16A1 LTR ERVL 364 456 -1 1047 121 18 30 chr6 26575458 26575623 -162703931 + FRAM SINE Alu 4 166 0 7116 55 1 1 chr6 26575632 26576850 -162702704 + L1PA6 LINE L1 4930 6154 0 270 148 0 37 chr6 26576859 26576913 -162702641 - MLT1B LTR MaLR -338 52 1 1275 127 24 79 chr6 26577421 26577461 -162702093 - L1MA9 LINE L1 -6 6306 6265 1683 168 44 10 chr6 26577461 26577758 -162701796 + AluJo SINE Alu 3 309 -3 1275 127 24 79 chr6 26577758 26578008 -162701546 - L1MA9 LINE L1 -47 6265 6032 266 183 0 33 chr6 26578008 26578068 -162701486 + L1MA6 LINE L1 5883 5940 -360 207 0 0 0 chr6 26578084 26578107 -162701447 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 644 205 0 0 chr6 26578311 26578428 -162701126 + FLAM_C SINE Alu 2 118 -15 865 110 4 25 chr6 26578453 26578688 -162700866 + (GGAA)n Simple_repeat Simple_repeat 1 230 0 2441 84 3 0 chr6 26579716 26580025 -162699529 + AluSp SINE Alu 1 310 -3 22 0 0 0 chr6 26580193 26580215 -162699339 + AT_rich Low_complexity Low_complexity 1 22 0 2618 42 0 0 chr6 26580655 26580964 -162698590 + AluY SINE Alu 1 309 -2 5062 77 3 3 chr6 26580994 26581654 -162697900 - L1PA7 LINE L1 0 6154 5495 763 238 14 22 chr6 26581654 26581877 -162697677 + HsTC2 DNA Tc2 19 239 -1659 203 0 0 36 chr6 26581887 26581915 -162697639 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 253 180 0 33 chr6 26581929 26581990 -162697564 - LTR30 LTR ERV1 -108 614 556 511 191 18 143 chr6 26582035 26582173 -162697381 + HsTC2 DNA Tc2 1645 1734 -164 1487 234 0 17 chr6 26582173 26582472 -162697082 + AluJo SINE Alu 1 294 -18 511 191 18 143 chr6 26582472 26582606 -162696948 + HsTC2 DNA Tc2 1734 1883 -15 1992 105 10 53 chr6 26582710 26583014 -162696540 + AluSx SINE Alu 1 291 -21 1889 142 64 45 chr6 26583123 26583390 -162696164 - MER47A DNA MER2_type -1957 366 89 2060 126 10 0 chr6 26583390 26583692 -162695862 - AluSx SINE Alu -7 305 1 1889 142 64 45 chr6 26583692 26583783 -162695771 - MER47A DNA MER2_type -2234 89 1 22 0 0 0 chr6 26583871 26583893 -162695661 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 26584161 26584189 -162695365 + AT_rich Low_complexity Low_complexity 1 28 0 2217 138 0 0 chr6 26584229 26584540 -162695014 + AluSx SINE Alu 1 311 -1 270 0 0 0 chr6 26584549 26584579 -162694975 + (CA)n Simple_repeat Simple_repeat 2 31 0 2320 107 0 3 chr6 26585057 26585366 -162694188 + AluSq SINE Alu 1 308 -5 2576 37 3 0 chr6 26585759 26586059 -162693495 + AluY SINE Alu 1 301 -10 2146 113 0 0 chr6 26586224 26586515 -162693039 + AluSg SINE Alu 5 295 -15 2133 140 0 9 chr6 26586725 26587040 -162692514 + AluSx SINE Alu 1 312 0 945 205 57 14 chr6 26587087 26587297 -162692257 + MER20 DNA MER1_type 1 219 0 2222 128 3 0 chr6 26587536 26587848 -162691706 + AluSp SINE Alu 1 313 0 1953 184 3 0 chr6 26588862 26589215 -162690339 + MER47B DNA MER2_type 1 354 -64 309 271 0 23 chr6 26589216 26589240 -162690314 + (TA)n Simple_repeat Simple_repeat 1 24 -106 2087 147 0 3 chr6 26589240 26589540 -162690014 + AluSx SINE Alu 1 299 -13 309 271 0 23 chr6 26589540 26589636 -162689918 + (TA)n Simple_repeat Simple_repeat 24 120 -10 351 0 0 0 chr6 26589636 26589675 -162689879 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 309 271 0 23 chr6 26589675 26589686 -162689868 + (TA)n Simple_repeat Simple_repeat 120 130 0 1634 177 17 27 chr6 26589687 26589986 -162689568 - AluJb SINE Alu -16 296 1 420 175 0 0 chr6 26589987 26590050 -162689504 + MER47B DNA MER2_type 356 418 0 1218 310 68 64 chr6 26590072 26590292 -162689262 + L2 LINE L2 2061 2279 -1035 2047 131 16 13 chr6 26590292 26590632 -162688922 - AluSq SINE Alu 0 341 1 1218 310 68 64 chr6 26590632 26590805 -162688749 + L2 LINE L2 2279 2450 -864 2191 128 11 121 chr6 26590805 26591243 -162688311 + MLT1B LTR MaLR 1 390 0 1218 310 68 64 chr6 26591243 26591649 -162687905 + L2 LINE L2 2450 2892 -422 2188 99 3 0 chr6 26592414 26592790 -162686764 - AluSq SINE Alu 0 377 1 2388 192 63 103 chr6 26593410 26594125 -162685429 - LTR8A LTR ERV1 -8 719 34 1122 287 81 42 chr6 26594140 26594292 -162685262 + L2 LINE L2 1849 1994 -1320 1700 173 287 26 chr6 26594292 26594784 -162684770 - LTR29 LTR ERV1 -1 621 2 1122 287 81 42 chr6 26594784 26594957 -162684597 + L2 LINE L2 1994 2159 -1155 2079 129 10 0 chr6 26594957 26595251 -162684303 - AluSq SINE Alu -16 297 1 1122 287 81 42 chr6 26595251 26595418 -162684136 + L2 LINE L2 2159 2361 -953 1875 110 8 4 chr6 26595426 26595736 -162683818 - AluSp SINE Alu 0 328 18 546 256 32 15 chr6 26595761 26595965 -162683589 - L1MCc LINE L1 -4586 2536 2144 585 265 45 69 chr6 26595966 26596482 -162683072 - L1MCc LINE L1 -4889 1534 1130 977 254 171 28 chr6 26598004 26598504 -162681050 + L2 LINE L2 2732 3312 -1 182 322 59 25 chr6 26598628 26598746 -162680808 - L2 LINE L2 -164 3108 2987 236 356 35 0 chr6 26598861 26598948 -162680606 - L2 LINE L2 -537 2777 2688 524 237 10 0 chr6 26599143 26599240 -162680314 - MER2 DNA MER2_type -247 98 1 420 342 73 6 chr6 26599292 26599505 -162680049 + MIR SINE MIR 5 236 -26 2046 64 0 4 chr6 26599705 26599954 -162679600 - AluY SINE Alu -10 301 54 346 303 83 23 chr6 26599958 26600090 -162679464 - MIR SINE MIR -117 145 6 2225 110 7 0 chr6 26600155 26600447 -162679107 - AluSx SINE Alu -18 294 1 686 260 43 47 chr6 26600447 26600747 -162678807 - L1ME4a LINE L1 -228 5893 5595 2317 95 0 7 chr6 26600768 26601074 -162678480 + AluSx SINE Alu 1 304 -8 729 308 57 0 chr6 26601582 26601881 -162677673 + MER58B DNA MER1_type 26 341 0 1788 179 0 10 chr6 26601935 26602243 -162677311 - AluSx SINE Alu -7 305 1 1599 158 8 8 chr6 26602290 26602555 -162676999 - AluJb SINE Alu -8 304 40 368 329 7 28 chr6 26602558 26602701 -162676853 - L1MC/D LINE L1 -2081 5727 5588 2221 120 0 0 chr6 26602725 26603024 -162676530 + AluSx SINE Alu 1 299 -13 231 277 36 12 chr6 26604428 26604511 -162675043 + MIR SINE MIR 178 262 0 892 194 10 53 chr6 26604570 26604708 -162674846 + MARNA DNA Mariner 246 374 -212 2130 145 0 0 chr6 26604708 26605004 -162674550 + AluSx SINE Alu 1 296 -16 892 194 10 53 chr6 26605004 26605071 -162674483 + MARNA DNA Mariner 374 442 -144 309 278 52 52 chr6 26605301 26605416 -162674138 + L2 LINE L2 3158 3272 0 2528 76 58 3 chr6 26605972 26606315 -162673239 + L1PA12 LINE L1 5807 6168 0 313 47 0 0 chr6 26606479 26606522 -162673032 - L1PA15 LINE L1 -8 6157 6115 839 73 122 79 chr6 26606522 26606686 -162672868 - L1PA14 LINE L1 -129 6032 5862 2385 105 0 0 chr6 26606687 26606991 -162672563 - AluSx SINE Alu -8 304 1 476 282 134 38 chr6 26611275 26611484 -162668070 - MIR SINE MIR -32 230 2 243 310 69 0 chr6 26611948 26612035 -162667519 + MER119 DNA MER1_type 1 93 -490 438 119 0 0 chr6 26612079 26612138 -162667416 + MER119 DNA MER1_type 523 581 -2 313 302 157 6 chr6 26612233 26612392 -162667162 - L3 LINE CR1 -48 1529 1347 1987 135 3 3 chr6 26612394 26612690 -162666864 - AluSx SINE Alu -16 296 1 1539 203 50 0 chr6 26612715 26613055 -162666499 + L1MC4 LINE L1 7682 8038 -4 977 254 171 28 chr6 26613594 26614094 -162665460 + L2 LINE L2 2732 3312 -1 259 345 35 0 chr6 26614451 26614538 -162665016 - L2 LINE L2 -537 2777 2688 524 237 10 0 chr6 26614733 26614830 -162664724 - MER2 DNA MER2_type -247 98 1 458 330 73 6 chr6 26614882 26615095 -162664459 + MIR SINE MIR 5 236 -26 2321 81 0 19 chr6 26615295 26615602 -162663952 - AluY SINE Alu -10 301 1 2274 103 0 0 chr6 26615648 26615940 -162663614 - AluSx SINE Alu -20 292 1 25 51 0 0 chr6 26616271 26616310 -162663244 + AT_rich Low_complexity Low_complexity 1 39 0 2316 94 3 0 chr6 26616587 26616895 -162662659 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 26618280 26618301 -162661253 + AT_rich Low_complexity Low_complexity 1 21 0 1606 163 47 11 chr6 26618336 26618613 -162660941 + AluJb SINE Alu 1 287 -25 532 137 0 0 chr6 26618633 26618706 -162660848 + AluJ/FRAM SINE Alu 215 287 -25 372 265 122 0 chr6 26619068 26619166 -162660388 + MIR SINE MIR 42 151 -111 5283 53 3 11 chr6 26619779 26620414 -162659140 + SVA Other Other 757 1386 0 270 229 0 0 chr6 26622360 26622430 -162657124 + (TA)n Simple_repeat Simple_repeat 2 71 0 195 69 0 0 chr6 26622672 26622701 -162656853 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2257 86 0 0 chr6 26622720 26622998 -162656556 + AluSc SINE Alu 1 278 -31 22 0 0 0 chr6 26623009 26623031 -162656523 + AT_rich Low_complexity Low_complexity 1 22 0 2356 81 0 7 chr6 26623344 26623642 -162655912 - AluSx SINE Alu -8 304 9 256 255 71 10 chr6 26623666 26623764 -162655790 - L1MC4 LINE L1 -26 8016 7913 780 200 0 0 chr6 26623892 26624017 -162655537 - FLAM_A SINE Alu -8 125 1 2113 99 39 0 chr6 26624278 26624560 -162654994 + AluSp SINE Alu 1 293 -20 27 62 0 0 chr6 26627567 26627615 -162651939 + AT_rich Low_complexity Low_complexity 1 48 0 2281 99 0 3 chr6 26627768 26628061 -162651493 - AluSx SINE Alu -20 292 1 930 215 54 5 chr6 26628217 26628422 -162651132 - MIR SINE MIR -18 244 30 2475 77 0 0 chr6 26628431 26628730 -162650824 - AluY SINE Alu -12 299 1 376 210 58 94 chr6 26628761 26628899 -162650655 - L1MC4 LINE L1 -24 8018 5945 25 0 0 0 chr6 26629481 26629506 -162650048 + AT_rich Low_complexity Low_complexity 1 25 0 800 181 0 0 chr6 26630836 26630969 -162648585 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr6 26631928 26631951 -162647603 + AT_rich Low_complexity Low_complexity 1 23 0 2242 182 125 92 chr6 26631956 26632656 -162646898 - LTR48 LTR ERV1 0 787 59 1643 130 6 102 chr6 26632656 26632979 -162646575 + AluSx SINE Alu 3 294 -18 2242 182 125 92 chr6 26632979 26633037 -162646517 - LTR48 LTR ERV1 -728 59 4 469 200 47 33 chr6 26633133 26633283 -162646271 - MER104 DNA Tc2 0 180 29 6831 115 5 9 chr6 26633535 26634508 -162645046 + LTR5 LTR ERVK 1 969 0 767 262 191 45 chr6 26634779 26635161 -162644393 - L2 LINE L2 -497 2817 2380 2548 62 0 0 chr6 26635161 26635468 -162644086 - AluY SINE Alu -4 307 1 332 272 28 28 chr6 26635533 26635713 -162643841 + L1ME4a LINE L1 5942 6121 0 1793 100 115 7 chr6 26635736 26636005 -162643549 + AluSc SINE Alu 5 302 -7 1905 153 4 0 chr6 26636132 26636413 -162643141 + AluJo SINE Alu 1 282 -30 393 250 9 120 chr6 26637875 26638091 -162641463 + L2 LINE L2 2900 3091 -181 283 284 94 39 chr6 26638312 26638439 -162641115 + L2 LINE L2 3139 3272 0 2249 91 14 3 chr6 26638943 26639240 -162640314 - AluY SINE Alu -11 300 1 1666 170 42 10 chr6 26640332 26640621 -162638933 + AluJo SINE Alu 2 299 -13 222 37 0 0 chr6 26640740 26640767 -162638787 + (A)n Simple_repeat Simple_repeat 1 27 0 797 204 0 0 chr6 26640774 26640906 -162638648 + FLAM_A SINE Alu 2 133 0 658 186 0 0 chr6 26641090 26641187 -162638367 + MER2 DNA MER2_type 1 97 -248 1980 125 0 20 chr6 26641187 26641491 -162638063 + AluSx SINE Alu 1 298 -14 1100 277 87 3 chr6 26641534 26641834 -162637720 + MER119 DNA MER1_type 1 325 -258 636 243 20 7 chr6 26641866 26642018 -162637536 + MER45A DNA AcHobo 16 169 -9 231 270 0 0 chr6 26642033 26642107 -162637447 + L1MD2 LINE L1 6154 6227 -132 322 191 48 119 chr6 26642108 26642276 -162637278 - L1MCa LINE L1 -4350 2076 1921 1355 232 7 3 chr6 26642283 26642589 -162636965 - AluJo SINE Alu -5 307 1 2394 85 0 0 chr6 26642591 26642897 -162636657 - AluY SINE Alu -5 306 1 843 147 0 7 chr6 26642898 26643034 -162636520 - AluJo SINE Alu -177 135 1 240 204 19 0 chr6 26643065 26643119 -162636435 + MER119 DNA MER1_type 528 582 -1 3545 106 8 10 chr6 26643226 26643727 -162635827 - LTR3b LTR ERVK 0 500 1 1898 129 3 13 chr6 26643818 26644127 -162635427 - AluSx SINE Alu -6 306 1 830 277 57 14 chr6 26644180 26644534 -162635020 + L1ME4a LINE L1 5556 5924 -197 239 203 51 13 chr6 26644550 26644629 -162634925 + L1ME4a LINE L1 6030 6111 -10 21 0 0 0 chr6 26644645 26644666 -162634888 + AT_rich Low_complexity Low_complexity 1 21 0 1580 161 17 3 chr6 26644726 26645017 -162634537 + AluJb SINE Alu 5 299 -13 2085 110 3 0 chr6 26645155 26645478 -162634076 - AluSx SINE Alu 0 324 1 345 319 14 36 chr6 26645478 26645616 -162633938 - MIR SINE MIR -96 166 32 985 159 24 6 chr6 26646246 26646416 -162633138 + MLT1B LTR MaLR 1 173 -217 830 168 100 100 chr6 26646416 26646666 -162632888 + AluJo SINE Alu 49 298 -14 727 86 9 52 chr6 26646686 26646802 -162632752 + MLT1B LTR MaLR 215 325 -65 2024 105 10 42 chr6 26647376 26647713 -162631841 + AluSx SINE Alu 1 327 0 637 238 0 0 chr6 26648453 26648579 -162630975 + FLAM_C SINE Alu 3 128 -15 185 389 63 8 chr6 26648692 26648818 -162630736 + L2 LINE L2 3134 3266 -6 362 343 165 23 chr6 26649023 26649411 -162630143 - L2 LINE L2 -3 3269 2827 2055 98 40 3 chr6 26650383 26650680 -162628874 + AluSx SINE Alu 1 308 -4 271 200 0 125 chr6 26650711 26650757 -162628797 - MIR SINE MIR 0 262 212 785 170 17 139 chr6 26650757 26650850 -162628704 - MER3 DNA MER1_type -4 205 102 2115 95 18 0 chr6 26650850 26651134 -162628420 + AluSq SINE Alu 3 291 -22 785 170 17 139 chr6 26651134 26651145 -162628409 - MER3 DNA MER1_type -107 102 91 198 0 0 0 chr6 26651145 26651167 -162628387 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 785 170 17 139 chr6 26651167 26651291 -162628263 - MER3 DNA MER1_type -118 91 4 271 200 0 125 chr6 26651291 26651324 -162628230 - MIR SINE MIR -50 212 193 2154 95 23 0 chr6 26651480 26651784 -162627770 - AluSp SINE Alu -2 311 1 1911 153 7 0 chr6 26652642 26652937 -162626617 + AluSx SINE Alu 1 297 -15 579 234 13 32 chr6 26653326 26653484 -162626070 + L1MD3 LINE L1 7797 7951 -44 247 118 53 105 chr6 26653587 26653633 -162625921 + L1MD3 LINE L1 7924 7966 -29 2064 108 0 7 chr6 26653633 26653928 -162625626 + AluSx SINE Alu 1 293 -19 247 118 53 105 chr6 26653928 26653957 -162625597 + L1MD3 LINE L1 7966 7995 0 216 0 0 0 chr6 26653979 26654003 -162625551 + (TG)n Simple_repeat Simple_repeat 2 25 0 1700 114 0 0 chr6 26655126 26655363 -162624191 + AluSq SINE Alu 1 237 -76 21 0 0 0 chr6 26655814 26655835 -162623719 + AT_rich Low_complexity Low_complexity 1 21 0 967 120 0 0 chr6 26656173 26656306 -162623248 + FLAM_C SINE Alu 1 133 0 1930 118 11 0 chr6 26656397 26656706 -162622848 + AluSx SINE Alu 1 312 0 1898 104 8 4 chr6 26657181 26657449 -162622105 - AluSx SINE Alu -41 271 3 1794 165 0 3 chr6 26657484 26657781 -162621773 + AluJb SINE Alu 7 302 -10 2044 102 28 0 chr6 26657881 26658165 -162621389 + AluSg SINE Alu 1 292 -18 277 314 0 0 chr6 26658635 26658705 -162620849 - L2 LINE L2 -2 3270 3201 517 226 8 68 chr6 26658804 26658878 -162620676 - MER45A DNA AcHobo -1403 178 114 2252 85 3 0 chr6 26658878 26659172 -162620382 + AluSx SINE Alu 1 295 -17 517 226 8 68 chr6 26659172 26659230 -162620324 - MER45A DNA AcHobo -1467 114 54 257 329 0 0 chr6 26659427 26659497 -162620057 + L2 LINE L2 2986 3055 -217 1687 167 10 10 chr6 26659531 26659830 -162619724 - AluJb SINE Alu -9 303 5 1449 136 5 0 chr6 26660216 26660436 -162619118 - AluJo SINE Alu -52 260 40 2163 106 0 10 chr6 26661017 26661318 -162618236 - AluSx SINE Alu -14 298 1 378 253 48 0 chr6 26662048 26662131 -162617423 + L2 LINE L2 3168 3254 -18 181 241 74 19 chr6 26662090 26662144 -162617410 + MIR SINE MIR 206 262 0 * 23 78 0 0 chr6 26662159 26662210 -162617344 + AT_rich Low_complexity Low_complexity 1 51 0 1851 156 0 7 chr6 26662408 26662710 -162616844 - AluJo SINE Alu -12 300 1 545 299 86 30 chr6 26662712 26662946 -162616608 - MIR SINE MIR -5 257 11 671 262 77 0 chr6 26664532 26664715 -162614839 - MIR SINE MIR 0 262 66 2116 127 0 13 chr6 26665282 26665598 -162613956 + AluSx SINE Alu 1 312 0 1711 157 7 7 chr6 26665629 26665929 -162613625 + AluJb SINE Alu 1 300 -12 1969 137 0 10 chr6 26666434 26666741 -162612813 + AluSx SINE Alu 1 304 -8 664 289 11 16 chr6 26667714 26667904 -162611650 - MIR SINE MIR -6 256 68 341 122 20 0 chr6 26717981 26718059 -162561495 + Alu SINE Alu 234 312 0 2030 111 7 7 chr6 26718523 26718802 -162560752 - AluSx SINE Alu -31 281 3 1944 160 0 3 chr6 26718837 26719131 -162560423 + AluJb SINE Alu 7 299 -13 2166 106 28 0 chr6 26719234 26719518 -162560036 + AluSg SINE Alu 1 292 -18 251 314 0 0 chr6 26719988 26720058 -162559496 - L2 LINE L2 -2 3270 3201 517 221 8 69 chr6 26720158 26720230 -162559324 - MER45A DNA AcHobo -1405 176 114 2311 99 3 0 chr6 26720230 26720524 -162559030 + AluSx SINE Alu 1 295 -17 517 221 8 69 chr6 26720524 26720582 -162558972 - MER45A DNA AcHobo -1467 114 54 227 182 73 0 chr6 26720794 26720849 -162558705 + L2 LINE L2 2997 3055 -217 1878 168 0 10 chr6 26720883 26721186 -162558368 - AluJb SINE Alu -8 304 5 1544 136 5 0 chr6 26721572 26721792 -162557762 - AluJo SINE Alu -52 260 40 2301 106 0 10 chr6 26722373 26722676 -162556878 - AluSx SINE Alu -12 300 1 343 232 0 0 chr6 26723406 26723475 -162556079 + L2 LINE L2 3168 3236 -36 27 100 0 0 chr6 26723478 26723568 -162555986 + AT_rich Low_complexity Low_complexity 1 90 0 1982 152 0 7 chr6 26723766 26724068 -162555486 - AluJo SINE Alu -12 300 1 470 295 86 30 chr6 26724070 26724304 -162555250 - MIR SINE MIR -5 257 11 623 258 75 0 chr6 26725793 26725979 -162553575 - MIR SINE MIR 0 262 63 2274 120 0 13 chr6 26726544 26726860 -162552694 + AluSx SINE Alu 1 312 0 1826 157 7 7 chr6 26726891 26727191 -162552363 + AluJb SINE Alu 1 300 -12 2088 137 0 10 chr6 26727696 26728003 -162551551 + AluSx SINE Alu 1 304 -8 571 295 11 16 chr6 26728977 26729167 -162550387 - MIR SINE MIR -6 256 68 1337 212 116 59 chr6 26729409 26729527 -162550027 + MER4A LTR ERV1 5 115 -549 2478 83 3 0 chr6 26729527 26729839 -162549715 - AluSp SINE Alu 0 313 1 1337 212 116 59 chr6 26729839 26730178 -162549376 + MER4A LTR ERV1 115 488 -176 1276 127 0 0 chr6 26730181 26730354 -162549200 - AluSg/x SINE Alu -6 306 134 371 154 138 0 chr6 26730360 26730425 -162549129 - tRNA-Ile-ATT tRNA tRNA -3 74 1 1214 137 0 26 chr6 26730431 26730621 -162548933 + MER4B LTR ERV1 426 610 0 6218 4 0 0 chr6 26730746 26731422 -162548132 + L1PA2 LINE L1 5477 6152 -3 277 298 48 30 chr6 26731551 26731719 -162547835 + L1ME LINE L1 49 219 -5900 459 110 0 73 chr6 26731759 26731841 -162547713 - Alu SINE Alu -8 302 227 565 252 55 39 chr6 26731862 26732173 -162547381 + L1ME LINE L1 2277 2589 -3540 2302 117 0 0 chr6 26732225 26732532 -162547022 - AluSq SINE Alu -6 307 1 771 278 51 64 chr6 26732532 26732851 -162546703 + L1ME LINE L1 4521 4832 -1297 1297 166 136 11 chr6 26732851 26733116 -162546438 + AluJb SINE Alu 5 302 0 771 278 51 64 chr6 26733116 26733324 -162546230 + L1ME LINE L1 4832 5041 -1088 1168 118 0 18 chr6 26733351 26733521 -162546033 - FRAM SINE Alu -12 164 1 650 278 47 18 chr6 26733526 26734002 -162545552 + L1ME LINE L1 5069 5558 -595 2437 78 0 0 chr6 26734414 26734709 -162544845 - AluSq SINE Alu -18 295 1 189 0 0 0 chr6 26734712 26734733 -162544821 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr6 26735443 26735476 -162544078 + AT_rich Low_complexity Low_complexity 1 33 0 2358 94 0 16 chr6 26735476 26735794 -162543760 + AluSq SINE Alu 1 313 0 342 45 0 0 chr6 26735797 26735841 -162543713 + (CA)n Simple_repeat Simple_repeat 1 44 0 2255 109 0 26 chr6 26736293 26736604 -162542950 + AluSc SINE Alu 1 303 -6 1222 119 0 0 chr6 26737027 26737187 -162542367 + AluSg/x SINE Alu 137 296 -16 180 71 0 0 chr6 26737188 26737196 -162542358 + (CA)n Simple_repeat Simple_repeat 1 8 -20 2373 72 0 44 chr6 26737196 26737515 -162542039 + AluY SINE Alu 1 305 -6 180 71 0 0 chr6 26737515 26737534 -162542020 + (CA)n Simple_repeat Simple_repeat 7 28 0 186 358 15 0 chr6 26737648 26737715 -162541839 - L2 LINE L2 -14 3258 3191 1838 143 3 59 chr6 26739071 26739393 -162540161 + AluJo SINE Alu 2 305 -7 979 255 214 21 chr6 26740120 26740555 -162538999 + LTR33 LTR ERVL 2 520 -1 3111 75 82 7 chr6 26740581 26741033 -162538521 + LTR19A LTR ERV1 1 486 0 994 123 45 7 chr6 26741965 26742120 -162537434 - AluSq SINE Alu -16 297 137 247 235 0 0 chr6 26742172 26742223 -162537331 + (CACG)n Simple_repeat Simple_repeat 2 52 0 339 306 48 43 chr6 26742734 26742943 -162536611 + LTR67 LTR ERVL 348 557 0 22 0 0 0 chr6 26742977 26742999 -162536555 + AT_rich Low_complexity Low_complexity 1 22 0 332 179 0 15 chr6 26743431 26743498 -162536056 + MLT1K LTR MaLR 496 561 -27 294 246 64 18 chr6 26743501 26743611 -162535943 - MIR SINE MIR 0 262 148 1723 106 4 31 chr6 26743731 26743902 -162535652 - AluSx SINE Alu -9 303 140 2346 119 0 0 chr6 26743902 26744212 -162535342 - AluSx SINE Alu 0 312 3 1723 106 4 31 chr6 26744212 26744296 -162535258 - AluSx SINE Alu -172 140 55 1617 181 51 0 chr6 26744310 26744586 -162534968 + AluJo SINE Alu 1 290 -22 317 228 66 49 chr6 26744597 26744679 -162534875 + L1 LINE L1 4735 4785 -1361 1644 175 0 0 chr6 26744679 26744936 -162534618 + AluSx SINE Alu 1 257 -55 317 228 66 49 chr6 26744936 26745030 -162534524 + L1 LINE L1 4785 4876 -1270 1913 114 44 0 chr6 26745030 26745301 -162534253 + AluSx SINE Alu 1 283 -29 408 188 10 31 chr6 26745304 26745400 -162534154 + L1MC4 LINE L1 6514 6607 -1435 980 128 0 0 chr6 26745401 26745534 -162534020 - AluSg/x SINE Alu -36 276 144 2210 81 0 18 chr6 26745534 26745848 -162533706 - AluY SINE Alu 0 309 1 1942 145 3 17 chr6 26745853 26746149 -162533405 - AluSx SINE Alu -20 292 1 963 127 0 8 chr6 26746889 26747023 -162532531 + FLAM_C SINE Alu 1 133 -10 397 125 0 0 chr6 26747026 26747082 -162532472 + U6 snRNA snRNA 1 56 -51 2344 99 3 0 chr6 26747308 26747602 -162531952 - AluSp SINE Alu -18 295 1 367 298 99 6 chr6 26747975 26748156 -162531398 + MIR SINE MIR 51 248 -14 2284 87 0 3 chr6 26748178 26748466 -162531088 + AluSx SINE Alu 11 297 -15 432 212 96 48 chr6 26749249 26749395 -162530159 - MIR3 SINE MIR -11 197 45 295 295 0 0 chr6 26749526 26749604 -162529950 + MIR3 SINE MIR 121 198 -10 2478 59 0 16 chr6 26749759 26750064 -162529490 + AluY SINE Alu 1 300 -11 1121 110 37 21 chr6 26750203 26750394 -162529160 + L1MA9 LINE L1 6119 6312 0 2259 125 0 3 chr6 26752102 26752415 -162527139 + AluSx SINE Alu 1 312 0 652 246 77 27 chr6 26752572 26752792 -162526762 + Charlie8 DNA MER1_type 46 276 -2141 1728 158 27 31 chr6 26753053 26753345 -162526209 + AluSx SINE Alu 4 294 -18 2426 89 0 13 chr6 26753856 26754172 -162525382 + AluSx SINE Alu 1 312 0 821 175 142 57 chr6 26754438 26754684 -162524870 + ORSL DNA AcHobo 2 268 -7 2010 120 0 7 chr6 26754848 26755140 -162524414 + AluSx SINE Alu 22 311 -1 181 0 69 0 chr6 26755147 26755176 -162524378 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 231 314 218 0 chr6 26755873 26755997 -162523557 - MIR SINE MIR -81 181 31 211 226 0 32 chr6 26756695 26756757 -162522797 + C-rich Low_complexity Low_complexity 4 63 0 422 218 21 115 chr6 26757788 26758022 -162521532 - L2 LINE L2 0 3313 3102 1415 185 12 52 chr6 26758073 26758571 -162520983 - MLT1B LTR MaLR -2 465 1 617 133 0 0 chr6 26758622 26758712 -162520842 - LTR12 LTR ERV1 0 714 625 317 146 58 87 chr6 26758712 26758815 -162520739 - LTR30 LTR ERV1 -92 614 378 822 167 89 45 chr6 26758917 26759208 -162520346 - LTR12 LTR ERV1 -481 1683 62 277 211 0 0 chr6 26759208 26759260 -162520294 - LTR30 LTR ERV1 -670 52 1 2185 249 73 19 chr6 26759279 26760005 -162519549 - L2 LINE L2 -382 2932 2168 2133 80 6 61 chr6 26760315 26760450 -162519104 + AluSx SINE Alu 1 142 -170 2346 93 0 10 chr6 26760450 26760760 -162518794 + AluSx SINE Alu 1 307 -5 2133 80 6 61 chr6 26760760 26760935 -162518619 + AluSx SINE Alu 142 294 -18 21 0 0 0 chr6 26761088 26761109 -162518445 + AT_rich Low_complexity Low_complexity 1 21 0 1533 197 3 58 chr6 26761113 26761293 -162518261 - AluJo SINE Alu 0 312 157 2316 67 30 7 chr6 26761293 26761592 -162517962 - AluY SINE Alu -5 306 1 1533 197 3 58 chr6 26761592 26761741 -162517813 - AluJo SINE Alu -155 157 1 692 99 0 0 chr6 26761797 26761898 -162517656 - L1MB3 LINE L1 0 6183 6083 908 103 0 15 chr6 26761999 26762135 -162517419 + L1MB3 LINE L1 5840 5973 -210 863 194 0 0 chr6 26762135 26762316 -162517238 + FRAM SINE Alu 2 182 0 232 164 60 134 chr6 26762489 26762556 -162516998 + AluJo SINE Alu 87 148 -154 864 198 0 19 chr6 26763187 26763344 -162516210 + AluJo SINE Alu 129 282 -30 32 26 0 0 chr6 26763344 26763383 -162516171 + AT_rich Low_complexity Low_complexity 1 39 0 266 170 0 0 chr6 26763472 26763525 -162516029 - MLT2B1 LTR ERVL -4 516 464 339 179 0 0 chr6 26763529 26763596 -162515958 + (TG)n Simple_repeat Simple_repeat 2 68 0 2175 178 125 19 chr6 26763612 26764044 -162515510 - MLT2B1 LTR ERVL -42 478 1 559 265 65 20 chr6 26765727 26765927 -162513627 + MIR SINE MIR 39 247 -15 1246 195 0 0 chr6 26766051 26766261 -162513293 + MER58A DNA MER1_type 15 224 0 484 265 78 43 chr6 26766961 26767310 -162512244 + L2 LINE L2 2712 3069 -244 2214 110 3 0 chr6 26767320 26767612 -162511942 + AluSx SINE Alu 1 293 -19 353 237 0 126 chr6 26767691 26767826 -162511728 - L1MC4a LINE L1 -1149 6659 6542 21 0 0 0 chr6 26767831 26767852 -162511702 + AT_rich Low_complexity Low_complexity 1 21 0 2448 81 7 0 chr6 26767877 26768184 -162511370 - AluSg1 SINE Alu 0 309 1 26 30 0 0 chr6 26768270 26768303 -162511251 + AT_rich Low_complexity Low_complexity 1 33 0 1573 141 37 30 chr6 26768361 26768660 -162510894 - L1MC3 LINE L1 0 7785 7485 512 287 60 76 chr6 26768870 26769386 -162510168 - HAL1b LINE L1 -769 579 72 6265 86 15 8 chr6 26769423 26769716 -162509838 - L1PB1 LINE L1 -2 6149 5860 2399 95 3 0 chr6 26769716 26770022 -162509532 + AluSc SINE Alu 1 307 -2 6265 86 15 8 chr6 26770022 26771027 -162508527 - L1PB1 LINE L1 -291 5860 4877 9301 156 45 5 chr6 26771027 26772504 -162507050 - L1PBa LINE L1 -2548 4314 2897 180 0 0 0 chr6 26772504 26772524 -162507030 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9301 156 45 5 chr6 26772524 26773850 -162505704 - L1PBa LINE L1 -3965 2897 1392 929 220 5 0 chr6 26773847 26774038 -162505516 - L1PBa LINE L1 -6666 197 6 * 2061 134 0 0 chr6 26774311 26774623 -162504931 - AluSq SINE Alu 0 312 1 1806 141 61 17 chr6 26774701 26774998 -162504556 - AluJb SINE Alu -2 310 1 204 245 104 28 chr6 26775761 26775867 -162503687 + MIR SINE MIR 20 133 -129 2031 122 37 0 chr6 26776090 26776385 -162503169 + AluSx SINE Alu 1 306 -6 840 194 0 0 chr6 26776401 26776569 -162502985 - AluJb SINE Alu 0 305 138 210 118 0 0 chr6 26776721 26776755 -162502799 + (T)n Simple_repeat Simple_repeat 1 34 0 1970 136 14 0 chr6 26777076 26777362 -162502192 + AluSx SINE Alu 1 290 -22 2552 53 0 28 chr6 26777788 26778108 -162501446 + AluY SINE Alu 1 311 0 1794 154 59 3 chr6 26778293 26778579 -162500975 + AluJb SINE Alu 3 304 -8 1942 139 17 0 chr6 26778651 26778939 -162500615 - AluSx SINE Alu -19 293 1 365 118 9 173 chr6 26779733 26779843 -162499711 + LTR9 LTR ERV1 438 529 -83 26 50 0 0 chr6 26780188 26780228 -162499326 + AT_rich Low_complexity Low_complexity 1 40 0 494 91 0 0 chr6 26780715 26780792 -162498762 - Alu SINE Alu -2 310 234 545 263 20 40 chr6 26780792 26780916 -162498638 + L1ME4a LINE L1 5703 5823 -298 2173 133 0 0 chr6 26780916 26781217 -162498337 + AluSx SINE Alu 1 301 -11 545 263 20 40 chr6 26781217 26781290 -162498264 + L1ME4a LINE L1 5823 5896 -225 284 261 44 33 chr6 26781344 26781524 -162498030 + L1ME4a LINE L1 5882 6063 -58 332 212 61 38 chr6 26781687 26781703 -162497851 - L1MC4a LINE L1 -1800 6008 5994 694 203 0 15 chr6 26781703 26781836 -162497718 - FLAM_A SINE Alu -2 131 1 332 212 61 38 chr6 26781836 26781951 -162497603 - L1MC4a LINE L1 -1814 5994 5874 512 120 0 11 chr6 26782203 26782295 -162497259 + (TG)n Simple_repeat Simple_repeat 2 92 0 327 232 22 103 chr6 26782868 26783053 -162496501 - MIR3 SINE MIR -9 199 30 1821 143 17 17 chr6 26783370 26783491 -162496063 + AluJb SINE Alu 1 121 -191 2121 97 73 0 chr6 26783491 26783779 -162495775 - AluSx SINE Alu -3 309 1 1821 143 17 17 chr6 26783779 26783951 -162495603 + AluJb SINE Alu 120 294 -18 234 0 0 0 chr6 26784112 26784138 -162495416 + (TG)n Simple_repeat Simple_repeat 2 27 0 1217 142 18 36 chr6 26784639 26784858 -162494696 + L1MA5 LINE L1 6001 6215 -85 2182 102 7 3 chr6 26785610 26785913 -162493641 - AluSx SINE Alu -3 309 6 304 311 15 8 chr6 26786451 26786583 -162492971 - MER5B DNA MER1_type -44 134 2 23 0 0 0 chr6 26786866 26786889 -162492665 + AT_rich Low_complexity Low_complexity 1 23 0 1676 131 3 53 chr6 26787050 26787332 -162492222 + AluSq SINE Alu 1 268 -45 405 276 47 102 chr6 26787858 26788456 -162491098 + HAL1 LINE L1 810 1374 -1133 415 89 48 16 chr6 26788460 26788584 -162490970 + (TA)n Simple_repeat Simple_repeat 2 129 0 302 160 0 0 chr6 26788587 26788637 -162490917 + L1MC4 LINE L1 6654 6703 -1339 463 276 131 67 chr6 26788644 26788925 -162490629 + HAL1 LINE L1 1400 1722 -785 2305 101 0 0 chr6 26788925 26789222 -162490332 + AluSg SINE Alu 1 297 -13 463 276 131 67 chr6 26789222 26789390 -162490164 + HAL1 LINE L1 1722 1878 -629 2103 118 14 3 chr6 26789998 26790294 -162489260 - AluSq SINE Alu -14 299 1 1573 103 121 40 chr6 26790336 26790608 -162488946 - AluSg1 SINE Alu -13 296 3 256 256 128 96 chr6 26790699 26790788 -162488766 - HAL1 LINE L1 -872 1635 1550 2352 119 0 0 chr6 26790788 26791100 -162488454 - AluSx SINE Alu 0 312 1 256 256 128 96 chr6 26791100 26791304 -162488250 - HAL1 LINE L1 -957 1550 1319 2297 96 7 0 chr6 26791304 26791605 -162487949 - AluSx SINE Alu -9 303 1 256 256 128 96 chr6 26791605 26791770 -162487784 - HAL1 LINE L1 -1188 1319 1161 232 326 65 11 chr6 26792970 26793062 -162486492 + MIR SINE MIR 9 105 -157 2364 78 0 7 chr6 26797165 26797458 -162482096 + AluY SINE Alu 1 291 -20 1981 180 24 3 chr6 26797829 26798163 -162481391 + MER58B DNA MER1_type 1 341 0 1186 192 0 14 chr6 26799171 26799385 -162480169 - AluJo SINE Alu -101 211 1 9530 107 65 12 chr6 26799464 26800247 -162479307 - Tigger3(Golem) DNA MER2_type 0 3029 2289 2193 122 0 0 chr6 26800247 26800543 -162479011 + AluJb SINE Alu 1 296 -16 9530 107 65 12 chr6 26800543 26801241 -162478313 - Tigger3(Golem) DNA MER2_type -740 2289 1470 2959 143 69 20 chr6 26801237 26801434 -162478120 - Tigger3(Golem) DNA MER2_type -2465 564 378 * 1911 150 0 14 chr6 26801434 26801749 -162477805 - AluJb SINE Alu 0 311 1 2959 143 69 20 chr6 26801749 26802088 -162477466 - Tigger3(Golem) DNA MER2_type -2651 378 1 996 203 61 71 chr6 26802381 26802707 -162476847 - L1MD2 LINE L1 -10 6349 6027 1475 126 25 107 chr6 26802822 26803140 -162476414 - MLT1B LTR MaLR -91 299 13 2162 115 0 0 chr6 26803149 26803436 -162476118 + AluSx SINE Alu 1 287 -25 1935 153 10 7 chr6 26803491 26803791 -162475763 + AluSx SINE Alu 1 301 -11 2603 141 12 73 chr6 26803992 26804081 -162475473 + MER101 LTR ERV1 1 94 -380 1535 142 78 25 chr6 26804081 26804362 -162475192 + AluJb SINE Alu 1 296 -16 2603 141 12 73 chr6 26804362 26804777 -162474777 + MER101 LTR ERV1 94 474 0 551 223 208 20 chr6 26804860 26805062 -162474492 + L1ME1 LINE L1 5919 6158 -8 * 573 190 112 33 chr6 26804893 26805067 -162474487 + L1MA10 LINE L1 5970 6129 -188 1669 164 24 13 chr6 26805067 26805365 -162474189 - AluJb SINE Alu -11 301 1 573 190 112 33 chr6 26805365 26805378 -162474176 + L1MA10 LINE L1 6129 6317 0 1256 191 82 21 chr6 26805604 26805886 -162473668 - MER58B DNA MER1_type -6 335 37 416 269 134 19 chr6 26806802 26807018 -162472536 + MIR SINE MIR 12 252 -10 621 298 18 22 chr6 26809140 26809368 -162470186 + MIR SINE MIR 24 250 -12 976 214 0 0 chr6 26809517 26809695 -162469859 + FRAM SINE Alu 1 175 -1 2724 140 17 9 chr6 26809818 26810240 -162469314 - MER61B LTR ERV1 0 425 1 1415 168 150 34 chr6 26810541 26810673 -162468881 + MLT1A1 LTR MaLR 1 116 -249 2232 114 0 13 chr6 26810673 26810979 -162468575 + AluSx SINE Alu 1 302 -10 1415 168 150 34 chr6 26810979 26811173 -162468381 + MLT1A1 LTR MaLR 116 365 0 667 276 30 0 chr6 26811208 26811407 -162468147 + MIR SINE MIR 58 262 0 243 250 80 20 chr6 26811869 26811969 -162467585 + L2 LINE L2 3142 3247 -25 1799 115 51 34 chr6 26812612 26812907 -162466647 - AluSx SINE Alu -12 300 1 602 255 37 30 chr6 26813819 26814022 -162465532 + MIR SINE MIR 59 262 0 2163 115 3 0 chr6 26814248 26814536 -162465018 - AluSp SINE Alu -22 291 3 226 77 19 39 chr6 26814896 26814928 -162464626 + LTR66 LTR ERVL 391 423 -187 402 21 0 0 chr6 26814928 26814975 -162464579 + (CA)n Simple_repeat Simple_repeat 2 48 0 226 77 19 39 chr6 26814975 26814994 -162464560 + LTR66 LTR ERVL 423 441 -169 * 3455 143 91 125 chr6 26814990 26815904 -162463650 + MER21A LTR ERV1 13 895 -36 2338 112 0 0 chr6 26816848 26817153 -162462401 + AluSx SINE Alu 1 305 -7 204 231 0 0 chr6 26817754 26817793 -162461761 + CT-rich Low_complexity Low_complexity 1 39 0 273 98 0 0 chr6 26817796 26817837 -162461717 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1077 193 177 4 chr6 26817845 26818099 -162461455 - AluJo SINE Alu -3 299 2 324 140 0 35 chr6 26818102 26818159 -162461395 - AluJo/FLAM SINE Alu -170 132 78 2002 96 0 0 chr6 26818596 26818846 -162460708 + AluSc SINE Alu 39 288 -21 1936 138 0 10 chr6 26818853 26819144 -162460410 + AluSx SINE Alu 1 288 -24 361 251 136 66 chr6 26819222 26819397 -162460157 + L1ME4a LINE L1 5681 5842 -279 698 183 0 23 chr6 26819397 26819528 -162460026 - FLAM_A SINE Alu -5 128 1 361 251 136 66 chr6 26819528 26819758 -162459796 + L1ME4a LINE L1 5842 6121 0 559 128 186 0 chr6 26819769 26819871 -162459683 + AluSq/x SINE Alu 2 122 -190 405 81 0 0 chr6 26819979 26820041 -162459513 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 485 200 25 58 chr6 26821138 26821258 -162458296 + MER21B LTR ERV1 384 499 -364 5031 147 30 1 chr6 26821342 26822156 -162457398 - L1MB7 LINE L1 -16 6168 5332 1359 185 37 63 chr6 26822156 26822565 -162456989 - MLT1C LTR MaLR 0 390 6 3234 199 24 30 chr6 26822574 26823193 -162456361 - L1MB7 LINE L1 -2192 3954 3340 1545 190 28 11 chr6 26823193 26823343 -162456211 - AluJb SINE Alu -23 289 130 2343 96 10 0 chr6 26823343 26823636 -162455918 - AluSx SINE Alu -16 296 1 1545 190 28 11 chr6 26823636 26823769 -162455785 - AluJb SINE Alu -182 130 1 3234 199 24 30 chr6 26823769 26823956 -162455598 - L1MB7 LINE L1 -2806 3340 3153 1971 168 3 0 chr6 26824191 26824501 -162455053 + AluSx SINE Alu 1 311 -1 2204 91 0 20 chr6 26826599 26826897 -162452657 + AluY SINE Alu 1 292 -19 2476 81 0 3 chr6 26827106 26827416 -162452138 + AluSc SINE Alu 1 309 0 205 290 0 0 chr6 26827429 26827497 -162452057 + MIR SINE MIR 86 143 -65 1268 240 25 21 chr6 26827788 26828113 -162451441 + MLT1A2 LTR MaLR 1 326 -48 877 164 8 0 chr6 26828853 26828987 -162450567 + AluJo SINE Alu 1 135 -177 1499 187 23 40 chr6 26829053 26829353 -162450201 + AluJo SINE Alu 1 295 -17 247 258 106 68 chr6 26829871 26830003 -162449551 - L2 LINE L2 0 3272 3136 317 325 43 34 chr6 26830965 26831174 -162448380 + MIR SINE MIR 6 216 -46 2428 55 7 0 chr6 26831941 26832230 -162447324 + AluY SINE Alu 1 291 -20 323 190 0 25 chr6 26832273 26832352 -162447202 + GA-rich Low_complexity Low_complexity 3 79 0 244 253 91 30 chr6 26832405 26832504 -162447050 + L2 LINE L2 3202 3306 -7 2095 137 3 7 chr6 26832542 26832841 -162446713 + AluSx SINE Alu 1 298 -14 884 141 0 15 chr6 26832893 26833028 -162446526 + FLAM_C SINE Alu 1 133 0 221 312 113 87 chr6 26833235 26833626 -162445928 + L2 LINE L2 2819 3219 -53 210 207 35 0 chr6 26834334 26834392 -162445162 + A-rich Low_complexity Low_complexity 4 63 0 1881 124 0 22 chr6 26834467 26834740 -162444814 + AluSx SINE Alu 1 267 -45 676 279 92 23 chr6 26834793 26835147 -162444407 + L1MC4a LINE L1 5519 5804 -360 23 0 0 0 chr6 26835396 26835419 -162444135 + AT_rich Low_complexity Low_complexity 1 23 0 2252 113 0 0 chr6 26835468 26835761 -162443793 + AluSg SINE Alu 1 293 -17 1920 166 0 10 chr6 26835786 26836082 -162443472 + AluJb SINE Alu 2 294 -18 189 0 0 0 chr6 26837951 26837972 -162441582 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1687 177 6 22 chr6 26838271 26838587 -162440967 + AluJb SINE Alu 1 311 -1 443 90 42 28 chr6 26841037 26841181 -162438373 + (TA)n Simple_repeat Simple_repeat 1 146 0 369 261 187 15 chr6 26842036 26842170 -162437384 + MER91A DNA MER1_type 19 175 -21 230 323 0 0 chr6 26842785 26842847 -162436707 - tRNA-Ser(Sec) tRNA tRNA -28 62 1 191 216 40 68 chr6 26842933 26843007 -162436547 - MER5A DNA MER1_type -115 74 3 2211 114 0 7 chr6 26843495 26843792 -162435762 + AluSx SINE Alu 1 295 -17 27 62 0 0 chr6 26844108 26844156 -162435398 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr6 26844270 26844306 -162435248 + AT_rich Low_complexity Low_complexity 1 36 0 1354 191 24 0 chr6 26894971 26895217 -162384337 + AluJo SINE Alu 59 310 -2 346 182 39 0 chr6 26895217 26895294 -162384260 + L1ME4a LINE L1 5387 5466 -2342 1830 168 3 13 chr6 26895311 26895626 -162383928 + AluJb SINE Alu 1 312 0 555 241 118 0 chr6 26895628 26895815 -162383739 + L1MC4a LINE L1 5723 5931 -1877 2053 58 0 4 chr6 26895936 26896195 -162383359 - AluY SINE Alu -8 303 46 28 0 0 0 chr6 26896250 26896278 -162383276 + AT_rich Low_complexity Low_complexity 1 28 0 267 147 156 64 chr6 26896430 26896539 -162383015 + MER53 DNA DNA 1 119 -70 337 271 226 28 chr6 26897655 26897836 -162381718 - MIR SINE MIR -44 218 2 354 266 73 0 chr6 26898058 26898167 -162381387 + L2 LINE L2 3197 3313 0 573 269 138 29 chr6 26898330 26898706 -162380848 + L1MC4a LINE L1 5698 6114 -1694 477 243 104 35 chr6 26898756 26899015 -162380539 - HAL1 LINE L1 -38 2469 2193 2333 60 14 0 chr6 26899511 26899793 -162379761 - AluSc SINE Alu -23 286 1 321 234 110 7 chr6 26899870 26900024 -162379530 - HAL1 LINE L1 -354 2153 1984 381 269 108 48 chr6 26900251 26900500 -162379054 + L1ME4a LINE L1 5653 5916 -205 1380 273 75 57 chr6 26900564 26900846 -162378708 + L1MEd LINE L1 72 347 -5772 2363 112 0 0 chr6 26900846 26901158 -162378396 + AluSx SINE Alu 1 312 0 1380 273 75 57 chr6 26901158 26901468 -162378086 + L1MEd LINE L1 347 650 -5469 1656 186 31 17 chr6 26901468 26901758 -162377796 + AluJo SINE Alu 1 294 -18 1380 273 75 57 chr6 26901758 26902104 -162377450 + L1MEd LINE L1 650 1028 -5091 1529 256 261 6 chr6 26902104 26902794 -162376760 - L2 LINE L2 -298 3015 2156 2303 109 0 0 chr6 26903448 26903742 -162375812 - AluSx SINE Alu -18 294 1 454 150 10 60 chr6 26903795 26903895 -162375659 - MLT1A2 LTR MaLR 0 390 296 609 189 28 35 chr6 26903903 26904046 -162375508 - MLT1A2 LTR MaLR -229 145 4 305 237 46 99 chr6 26905403 26905707 -162373847 + HAL1 LINE L1 812 1099 -1408 737 246 23 100 chr6 26905741 26905903 -162373651 - MIR SINE MIR -2 260 124 2141 122 17 7 chr6 26905903 26906198 -162373356 + AluSx SINE Alu 1 298 -14 737 246 23 100 chr6 26906198 26906295 -162373259 - MIR SINE MIR -138 124 21 204 97 0 0 chr6 26906362 26906393 -162373161 + (CA)n Simple_repeat Simple_repeat 2 32 0 503 294 63 28 chr6 26906393 26906787 -162372767 + HAL1 LINE L1 1155 1562 -945 1686 104 24 21 chr6 26906787 26907074 -162372480 + L1MA4 LINE L1 6007 6294 -6 428 315 42 67 chr6 26907102 26907154 -162372400 + HAL1 LINE L1 1534 1586 -921 1916 147 6 52 chr6 26907154 26907481 -162372073 - AluJb SINE Alu 0 312 1 428 315 42 67 chr6 26907481 26907666 -162371888 + HAL1 LINE L1 1586 1765 -742 232 326 22 11 chr6 26907838 26907927 -162371627 + LTR67 LTR ERVL 105 194 -363 835 200 0 0 chr6 26908079 26908234 -162371320 + FRAM SINE Alu 20 174 -2 389 232 40 47 chr6 26908304 26908508 -162371046 + L1M4 LINE L1 4906 5112 -1034 23 33 0 0 chr6 26908511 26908541 -162371013 + AT_rich Low_complexity Low_complexity 1 30 0 1883 199 45 22 chr6 26908570 26909078 -162370476 + L1MB7 LINE L1 3990 4509 -1637 1566 183 62 55 chr6 26909070 26909391 -162370163 + L1MB7 LINE L1 5729 6055 -129 * 2048 141 0 0 chr6 26909391 26909682 -162369872 + AluSx SINE Alu 1 291 -21 1566 183 62 55 chr6 26909682 26909813 -162369741 + L1MB7 LINE L1 6055 6184 0 388 248 97 9 chr6 26909814 26909927 -162369627 - L2 LINE L2 -16 3297 3175 248 364 45 38 chr6 26910110 26910242 -162369312 + L3 LINE CR1 245 377 -1200 326 192 0 13 chr6 26910587 26910665 -162368889 + CT-rich Low_complexity Low_complexity 2 78 0 180 111 0 0 chr6 26911655 26911682 -162367872 + (T)n Simple_repeat Simple_repeat 1 27 0 1587 210 65 22 chr6 26911706 26912154 -162367400 - MLT1C LTR MaLR 0 467 1 2437 80 0 0 chr6 26912381 26912682 -162366872 + AluY SINE Alu 7 307 -4 2060 119 28 0 chr6 26913046 26913332 -162366222 + AluSx SINE Alu 1 294 -18 2446 113 0 0 chr6 26913369 26913680 -162365874 + AluSx SINE Alu 2 312 0 240 111 0 0 chr6 26913817 26913853 -162365701 + (TA)n Simple_repeat Simple_repeat 1 36 0 265 267 7 53 chr6 26916029 26916179 -162363375 + L3 LINE CR1 1214 1356 -221 806 157 0 22 chr6 26916619 26916753 -162362801 + FLAM_C SINE Alu 1 131 -2 246 275 50 100 chr6 26917251 26917371 -162362183 - L2 LINE L2 -3 3269 3156 1526 203 154 53 chr6 26917699 26917861 -162361693 + MLT1E2 LTR MaLR 7 151 -475 2887 110 21 42 chr6 26917861 26918237 -162361317 - MER4C LTR ERV1 0 465 100 2084 127 23 16 chr6 26918237 26918545 -162361009 - AluSq SINE Alu -3 310 1 2887 110 21 42 chr6 26918545 26918641 -162360913 - MER4C LTR ERV1 -365 100 3 1526 203 154 53 chr6 26918641 26919039 -162360515 + MLT1E2 LTR MaLR 151 626 0 390 328 62 66 chr6 26919307 26919489 -162360065 + L1MEd LINE L1 99 281 -5838 7781 110 31 55 chr6 26919489 26920822 -162358732 + HSMAR2 DNA Mariner 1 1301 -1 390 328 62 66 chr6 26920822 26920895 -162358659 + L1MEd LINE L1 281 353 -5766 736 285 120 60 chr6 26921080 26921619 -162357935 + L1MEd LINE L1 591 1200 -4969 2399 81 0 0 chr6 26921620 26921918 -162357636 + AluY SINE Alu 1 298 -13 309 337 35 23 chr6 26921920 26921944 -162357610 + L1MCa LINE L1 1266 1288 -1499 1250 152 14 62 chr6 26921944 26922233 -162357321 + L1MA9 LINE L1 6034 6308 -4 309 337 35 23 chr6 26922233 26922610 -162356944 + L1MCa LINE L1 1288 1913 -874 2328 102 3 0 chr6 26922709 26923004 -162356550 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr6 26923063 26923085 -162356469 + AT_rich Low_complexity Low_complexity 1 22 0 426 56 125 0 chr6 26923217 26923289 -162356265 - L1MA4 LINE L1 -2 6298 6218 1999 145 87 29 chr6 26923749 26923800 -162355754 - L1MB3 LINE L1 -1 6182 6135 2020 146 0 3 chr6 26923800 26924095 -162355459 - AluJb SINE Alu -18 294 1 1999 145 87 29 chr6 26924095 26924456 -162355098 - L1MB3 LINE L1 -48 6135 5746 1438 193 61 0 chr6 26924891 26925155 -162354399 + AluJb SINE Alu 1 280 -32 536 208 18 18 chr6 26925158 26925326 -162354228 + GA-rich Low_complexity Low_complexity 4 171 0 * 633 89 30 37 chr6 26925317 26925452 -162354102 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 2060 94 42 11 chr6 26925864 26926151 -162353403 - AluSx SINE Alu -16 296 1 712 99 0 0 chr6 26926471 26926572 -162352982 + L1PB4 LINE L1 6048 6148 -8 790 252 13 35 chr6 26926870 26927100 -162352454 - MIR SINE MIR 0 262 38 2976 121 72 18 chr6 26927167 26927712 -162351842 + MER6A DNA MER2_type 32 605 0 432 0 0 0 chr6 26928982 26929030 -162350524 + (CA)n Simple_repeat Simple_repeat 2 49 0 331 274 71 18 chr6 26930139 26930252 -162349302 + MIR SINE MIR 89 207 -55 2272 67 0 3 chr6 26930262 26930600 -162348954 + AluY SINE Alu 1 337 0 245 274 105 48 chr6 26930684 26930808 -162348746 + LTR65 LTR ERV1 30 160 -509 301 324 0 0 chr6 26931313 26931384 -162348170 - L2 LINE L2 -7 3265 3195 1181 176 13 35 chr6 26931574 26931801 -162347753 + AluJo SINE Alu 1 222 -90 2318 87 7 0 chr6 26931984 26932272 -162347282 - AluSx SINE Alu -22 290 1 2445 84 0 0 chr6 26932484 26932782 -162346772 - AluY SINE Alu -13 298 1 21 36 0 0 chr6 26932785 26932813 -162346741 + AT_rich Low_complexity Low_complexity 1 28 0 3051 148 17 32 chr6 26934693 26934736 -162344818 - L1MB3 LINE L1 -9 6174 6132 2055 127 17 3 chr6 26934736 26935028 -162344526 - AluSx SINE Alu -16 296 1 3051 148 17 32 chr6 26935028 26935579 -162343975 - L1MB3 LINE L1 -51 6132 5589 235 340 101 73 chr6 26936504 26936751 -162342803 + L2 LINE L2 3019 3272 0 236 333 133 0 chr6 26936983 26937088 -162342466 + L2 LINE L2 2935 3053 -219 23 33 0 0 chr6 26937380 26937410 -162342144 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 26937879 26937900 -162341654 + AT_rich Low_complexity Low_complexity 1 21 0 2157 128 10 6 chr6 26937900 26938212 -162341342 + AluSp SINE Alu 1 313 0 1285 250 103 109 chr6 26938349 26940056 -162339498 + HAL1 LINE L1 67 1762 -745 722 214 30 135 chr6 26940213 26940480 -162339074 - MER8 DNA MER2_type 0 239 1 252 206 185 22 chr6 26941336 26941428 -162338126 - MIR SINE MIR -88 174 68 302 273 50 8 chr6 26941473 26941594 -162337960 - HAL1 LINE L1 -27 2480 2355 2459 149 25 51 chr6 26941988 26942497 -162337057 + LTR26B LTR ERV1 1 496 -35 883 79 0 64 chr6 26942496 26942636 -162336918 + MER4B LTR ERV1 477 607 -3 * 978 271 73 12 chr6 26942824 26943153 -162336401 + MLT1H1 LTR MaLR 1 349 -206 240 161 218 35 chr6 26943260 26943347 -162336207 - L1MC4 LINE L1 -58 7984 7882 1801 163 6 9 chr6 26943409 26943728 -162335826 - MER7A DNA MER2_type -28 318 3 3050 215 58 15 chr6 26943860 26944663 -162334891 - L1MC4 LINE L1 -377 7665 6828 429 214 22 0 chr6 26944708 26944797 -162334757 - L1MC4a LINE L1 -1049 6759 6669 4636 167 38 43 chr6 26944959 26945933 -162333621 + LTR5 LTR ERVK 1 969 0 680 171 62 207 chr6 26946279 26946583 -162332971 - MIR SINE MIR 0 262 3 2322 132 109 5 chr6 26946618 26947004 -162332550 + MSTB LTR MaLR 1 426 0 582 194 206 15 chr6 26947260 26947406 -162332148 - MER5A DNA MER1_type 0 178 10 410 228 111 94 chr6 26947427 26947598 -162331956 + MER5B DNA MER1_type 5 178 0 252 183 33 33 chr6 26948144 26948204 -162331350 - LTR67 LTR ERVL -20 537 478 653 353 57 64 chr6 26948711 26949116 -162330438 - L2 LINE L2 -1 3271 2870 2128 111 3 13 chr6 26951042 26951349 -162328205 - AluSp SINE Alu -9 304 1 2110 118 3 10 chr6 26951358 26951662 -162327892 - AluSx SINE Alu -10 302 1 1992 164 82 68 chr6 26951662 26952183 -162327371 - MER51A LTR ERV1 -90 455 2 1956 129 3 25 chr6 26952230 26952583 -162326971 - MER4A LTR ERV1 0 664 261 517 141 33 11 chr6 26952583 26952675 -162326879 - MER4A LTR ERV1 -566 98 5 16621 96 55 35 chr6 26952687 26954095 -162325459 - MER4A-int LTR ERV1 0 6598 5221 5826 48 0 3 chr6 26954095 26954766 -162324788 + L1PA6 LINE L1 5484 6152 -2 16621 96 55 35 chr6 26954766 26955502 -162324052 - MER4A-int LTR ERV1 -1377 5221 4384 2313 90 0 7 chr6 26955502 26955803 -162323751 + AluSc SINE Alu 3 301 -8 16621 96 55 35 chr6 26955803 26956363 -162323191 - MER4A-int LTR ERV1 -2214 4384 3837 1485 126 170 115 chr6 26956362 26956510 -162323044 - MER4A-int LTR ERV1 -2917 3681 3542 * 1893 156 0 0 chr6 26956510 26956792 -162322762 - AluSx SINE Alu -20 292 11 1485 126 170 115 chr6 26956792 26957194 -162322360 - MER4A-int LTR ERV1 -3056 3542 3001 1930 148 20 0 chr6 26957194 26957497 -162322057 - AluSx SINE Alu -3 309 1 1485 126 170 115 chr6 26957497 26957538 -162322016 - MER4A-int LTR ERV1 -3597 3001 2964 2002 144 0 22 chr6 26957544 26957857 -162321697 - AluSx SINE Alu -6 306 1 10130 41 9 2 chr6 26957873 26959821 -162319733 - L1PA5 LINE L1 0 6154 4196 46603 47 23 2 chr6 26959829 26965434 -162314120 - HERV17 LTR ERV1 -2903 5723 1 6430 53 12 47 chr6 26965434 26966242 -162313312 - LTR17 LTR ERV1 0 780 1 799 41 20 0 chr6 26966242 26966340 -162313214 - HERV17 LTR ERV1 -6498 100 1 1484 142 56 34 chr6 26966342 26966401 -162313153 - MER4A LTR ERV1 0 664 608 2046 111 7 10 chr6 26966401 26966690 -162312864 + AluSx SINE Alu 5 292 -20 1484 142 56 34 chr6 26966690 26966968 -162312586 - MER4A LTR ERV1 -56 608 261 605 84 42 11 chr6 26966968 26967063 -162312491 - MER4A LTR ERV1 -566 98 1 864 223 88 28 chr6 26967755 26967887 -162311667 - MER33 DNA MER1_type -2280 305 182 1712 168 7 0 chr6 26967887 26968161 -162311393 + AluJo SINE Alu 16 291 -21 864 223 88 28 chr6 26968161 26968311 -162311243 - MER33 DNA MER1_type -2403 182 6 2732 48 0 0 chr6 26968476 26968787 -162310767 - AluY SINE Alu 0 311 1 848 204 112 41 chr6 26968828 26969024 -162310530 + MER20 DNA MER1_type 6 215 -4 710 184 0 57 chr6 26969052 26969193 -162310361 + FLAM_C SINE Alu 1 133 0 1189 108 146 5 chr6 26969467 26969679 -162309875 - MSTB LTR MaLR 0 426 185 398 157 21 36 chr6 26969685 26969825 -162309729 + CT-rich Low_complexity Low_complexity 3 140 0 1218 173 18 9 chr6 26969833 26970058 -162309496 - AluJo SINE Alu 0 312 86 777 179 179 18 chr6 26970058 26970226 -162309328 - MSTB LTR MaLR -230 196 2 1207 152 14 5 chr6 26970226 26970436 -162309118 - L1MB3 LINE L1 -56 6127 5916 230 231 0 0 chr6 26970454 26970506 -162309048 - MER103 DNA DNA -75 91 40 2247 117 0 7 chr6 26970847 26971154 -162308400 - AluSx SINE Alu -7 305 1 291 285 24 86 chr6 26971337 26971398 -162308156 + L1ME LINE L1 5672 5735 -386 2034 148 0 3 chr6 26971398 26971701 -162307853 + AluJo SINE Alu 1 302 -10 291 285 24 86 chr6 26971701 26971846 -162307708 + L1ME LINE L1 5735 5872 -249 186 170 149 0 chr6 26971875 26971922 -162307632 - L2 LINE L2 -1 3271 3218 311 238 79 63 chr6 26972012 26972201 -162307353 + L1ME LINE L1 5281 5472 -2336 700 143 0 0 chr6 26972217 26972315 -162307239 + AluSp/q SINE Alu 200 297 -16 251 184 0 0 chr6 26972435 26972484 -162307070 + L1ME LINE L1 5771 5819 -343 507 122 0 24 chr6 26972538 26972620 -162306934 + FLAM_C SINE Alu 58 137 -6 26 30 0 0 chr6 26972865 26972898 -162306656 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 26973014 26973048 -162306506 + AT_rich Low_complexity Low_complexity 1 34 0 287 49 73 0 chr6 26974370 26974411 -162305143 - L2 LINE L2 0 3313 3270 656 192 60 177 chr6 26974474 26974859 -162304695 - L2 LINE L2 -49 3264 2925 235 139 0 0 chr6 26974901 26974937 -162304617 - L2 LINE L2 -570 2744 2709 310 241 0 0 chr6 26974940 26974998 -162304556 - Tigger5 DNA MER2_type 0 2323 2266 363 284 0 35 chr6 26975093 26975209 -162304345 - L2 LINE L2 -605 2709 2598 375 280 105 20 chr6 26975280 26975480 -162304074 - L2 LINE L2 -1220 2094 1878 1508 169 0 8 chr6 26975571 26975825 -162303729 - AluJo SINE Alu -25 287 36 259 259 191 8 chr6 26975834 26975965 -162303589 - MIR SINE MIR -18 244 90 2022 117 0 0 chr6 26976868 26977142 -162302412 - AluSx SINE Alu -15 297 24 263 316 118 7 chr6 26977532 26977668 -162301886 + MIR SINE MIR 88 238 -24 2322 102 0 0 chr6 26978173 26978468 -162301086 + AluSx SINE Alu 6 300 -12 350 228 130 0 chr6 26978529 26978621 -162300933 + L2 LINE L2 2954 3057 -215 1969 120 33 0 chr6 26978926 26979233 -162300321 + AluSx SINE Alu 1 316 0 307 234 16 0 chr6 26979582 26979646 -162299908 + MIR SINE MIR 194 258 -4 237 274 33 98 chr6 26979642 26979795 -162299759 - L3 LINE CR1 -42 1535 1393 * 2352 95 0 0 chr6 26979921 26980215 -162299339 - AluSg SINE Alu -16 294 1 694 117 216 0 chr6 26981547 26981658 -162297896 + AluJo SINE Alu 2 136 -176 1822 121 15 0 chr6 26981784 26982049 -162297505 - AluSx SINE Alu -14 298 30 2529 53 0 3 chr6 26982350 26982651 -162296903 - AluY SINE Alu -11 300 1 2278 107 0 0 chr6 26983567 26983877 -162295677 - AluSx SINE Alu -2 310 1 1422 156 73 43 chr6 26985116 26985265 -162294289 - MLT1A1 LTR MaLR -55 310 167 2114 118 3 3 chr6 26985265 26985552 -162294002 - AluSx SINE Alu -25 287 1 1422 156 73 43 chr6 26985552 26985703 -162293851 - MLT1A1 LTR MaLR -198 167 1 1315 180 84 0 chr6 26986056 26986317 -162293237 - AluJo SINE Alu -29 283 1 552 189 141 68 chr6 26986455 26986661 -162292893 + L1MC4a LINE L1 6627 6847 -961 293 239 141 7 chr6 26986681 26986823 -162292731 + L1MC4 LINE L1 7044 7204 -838 912 224 188 31 chr6 26987003 26987481 -162292073 + L1MC4 LINE L1 7490 8042 0 396 231 94 16 chr6 26987550 26987733 -162291821 + MIR SINE MIR 8 256 -6 189 107 0 0 chr6 26988052 26988080 -162291474 + (T)n Simple_repeat Simple_repeat 1 28 0 278 25 0 25 chr6 26988456 26988496 -162291058 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr6 26989419 26989442 -162290112 + AT_rich Low_complexity Low_complexity 1 23 0 1773 153 20 14 chr6 26989771 26990066 -162289488 + AluJb SINE Alu 1 297 -15 253 223 108 108 chr6 26990293 26990432 -162289122 - MIR SINE MIR -55 207 69 1581 173 39 11 chr6 26990504 26990788 -162288766 - AluJo SINE Alu -16 296 5 2237 70 17 30 chr6 26990863 26991162 -162288392 + AluY SINE Alu 1 295 -16 302 263 305 8 chr6 26991171 26991289 -162288265 - MER5A DNA MER1_type 0 189 37 202 286 0 0 chr6 26991408 26991457 -162288097 - MER5B DNA MER1_type -129 49 1 1880 145 39 0 chr6 26991497 26991779 -162287775 - AluJo SINE Alu -19 293 1 640 195 26 39 chr6 26992219 26992373 -162287181 - MER3 DNA MER1_type -55 154 3 420 276 164 0 chr6 26992580 26992714 -162286840 + MIR SINE MIR 53 208 -54 2347 91 7 0 chr6 26993408 26993705 -162285849 - AluSp SINE Alu -14 299 1 1708 173 23 23 chr6 26993858 26994159 -162285395 + AluJo SINE Alu 1 301 -11 246 32 0 0 chr6 26994381 26994412 -162285142 + (CA)n Simple_repeat Simple_repeat 2 32 0 968 119 0 0 chr6 26994654 26994780 -162284774 + FLAM_C SINE Alu 1 126 -17 1752 164 18 7 chr6 26995244 26995530 -162284024 + AluSx SINE Alu 1 289 -23 2212 87 0 71 chr6 26995530 26995852 -162283702 + AluSc SINE Alu 1 299 -10 363 208 42 0 chr6 26996195 26996267 -162283287 - Tigger5 DNA MER2_type 0 2323 2249 352 254 0 0 chr6 26996272 26996343 -162283211 + Tigger5 DNA MER2_type 2249 2319 -4 410 159 0 14 chr6 26996346 26996415 -162283139 - Tigger5 DNA MER2_type -2247 76 9 1969 138 3 10 chr6 26997762 26998059 -162281495 - AluSx SINE Alu -17 295 1 2142 124 0 7 chr6 26998706 26999012 -162280542 + AluSx SINE Alu 1 304 -8 2194 107 3 3 chr6 26999864 27000164 -162279390 - AluSx SINE Alu -12 300 1 712 212 7 22 chr6 27000654 27000791 -162278763 + AluJo SINE Alu 2 136 -176 180 0 0 0 chr6 27002297 27002317 -162277237 + (A)n Simple_repeat Simple_repeat 1 20 0 210 128 0 0 chr6 27003407 27003446 -162276108 + (CGG)n Simple_repeat Simple_repeat 3 41 0 2359 88 0 0 chr6 27005450 27005755 -162273799 + AluSx SINE Alu 1 305 -7 512 145 0 0 chr6 27005782 27005851 -162273703 - AluS SINE Alu -243 70 2 4354 150 95 20 chr6 27005919 27006682 -162272872 - L1MB8 LINE L1 -5 6173 5309 2039 120 7 0 chr6 27006682 27006996 -162272558 - AluSx SINE Alu 0 316 1 4354 150 95 20 chr6 27006996 27007243 -162272311 - L1MB8 LINE L1 -869 5309 5082 2261 109 3 0 chr6 27008745 27009057 -162270497 + AluSq SINE Alu 1 313 0 218 324 0 0 chr6 27009160 27009231 -162270323 + CT-rich Low_complexity Low_complexity 2 72 0 1892 215 204 5 chr6 27010019 27010465 -162269089 - MLT1F LTR MaLR -7 535 1 837 208 120 0 chr6 27010559 27010751 -162268803 - MER58A DNA MER1_type -1 223 9 283 213 80 13 chr6 27010752 27010827 -162268727 - MLT1I LTR MaLR -14 395 316 760 230 35 40 chr6 27010884 27011084 -162268470 - MLT1I LTR MaLR -189 220 22 221 275 154 44 chr6 27011506 27011597 -162267957 - L2 LINE L2 -13 3300 3200 273 284 47 40 chr6 27011979 27012127 -162267427 + HAL1 LINE L1 5 153 -2354 2384 106 0 0 chr6 27012264 27012575 -162266979 + AluSx SINE Alu 2 312 0 286 314 52 35 chr6 27012721 27012950 -162266604 + HAL1 LINE L1 848 1080 -1427 356 270 112 10 chr6 27012987 27013183 -162266371 + HAL1 LINE L1 1146 1361 -1146 251 236 24 65 chr6 27013202 27013325 -162266229 + HAL1b LINE L1 339 456 -892 * 1353 249 43 14 chr6 27013314 27013759 -162265795 + L1ME4a LINE L1 4888 5345 -801 2598 106 11 24 chr6 27013764 27014133 -162265421 + THE1B LTR MaLR 1 364 0 11854 98 2 2 chr6 27014133 27015705 -162263849 + THE1B-int LTR MaLR 1 1571 -9 430 265 63 5 chr6 27015969 27016158 -162263396 + L1ME4a LINE L1 5717 5916 -205 1202 312 75 37 chr6 27016209 27016521 -162263033 + L1MEd LINE L1 60 359 -5760 2285 111 3 0 chr6 27016521 27016827 -162262727 + AluSx SINE Alu 5 311 -1 1202 312 75 37 chr6 27016827 27017139 -162262415 + L1MEd LINE L1 359 708 -5411 1646 170 32 14 chr6 27017151 27017433 -162262121 + AluJo SINE Alu 13 299 -13 1379 199 115 3 chr6 27017433 27017745 -162261809 + L1ME3 LINE L1 5555 5901 -263 1909 131 4 0 chr6 27017751 27018019 -162261535 + AluSx SINE Alu 39 307 -5 526 111 0 30 chr6 27018022 27018121 -162261433 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 445 218 211 0 chr6 27018156 27018298 -162261256 + L1ME3 LINE L1 5990 6161 -1 301 286 59 77 chr6 27018330 27018550 -162261004 + L1MC4 LINE L1 7826 8041 -1 387 300 9 0 chr6 27018564 27018674 -162260880 + HAL1 LINE L1 1531 1641 -866 1118 299 78 31 chr6 27018708 27019156 -162260398 + MLT1K LTR MaLR 58 526 -62 1136 216 93 31 chr6 27019219 27019543 -162260011 + MLT1C LTR MaLR 1 344 -123 377 165 0 13 chr6 27019546 27019625 -162259929 + A-rich Low_complexity Low_complexity 2 79 0 623 153 0 10 chr6 27019663 27019761 -162259793 + MLT1C LTR MaLR 371 467 0 1894 140 7 0 chr6 27019800 27020078 -162259476 + AluJo SINE Alu 21 300 -12 2079 148 0 3 chr6 27020196 27020507 -162259047 + AluSx SINE Alu 1 310 -2 261 247 14 0 chr6 27020565 27020638 -162258916 + HAL1 LINE L1 2087 2160 -347 313 312 0 51 chr6 27020698 27020836 -162258718 + HAL1b LINE L1 761 891 -457 968 183 42 124 chr6 27021063 27021088 -162258466 + L1ME3A LINE L1 5667 5692 -478 2478 82 3 0 chr6 27021088 27021393 -162258161 + AluSp SINE Alu 1 306 -7 968 183 42 124 chr6 27021393 27021723 -162257831 + L1ME3A LINE L1 5692 5993 -177 1594 257 58 54 chr6 27021736 27022258 -162257296 - MLT1G1 LTR MaLR 0 595 72 507 235 37 43 chr6 27022302 27022464 -162257090 + L1ME3A LINE L1 6010 6170 0 687 273 150 5 chr6 27022523 27022743 -162256811 + MIR SINE MIR 11 262 0 2671 127 3 3 chr6 27022804 27023166 -162256388 + THE1B LTR MaLR 3 364 0 1018 161 4 100 chr6 27023651 27023881 -162255673 + MLT1B LTR MaLR 1 208 -182 562 235 76 38 chr6 27023882 27024014 -162255540 + FLAM_A SINE Alu 1 137 -5 1163 172 0 0 chr6 27024015 27024201 -162255353 + MLT1B LTR MaLR 205 390 0 1646 180 0 46 chr6 27024293 27024598 -162254956 + AluJo SINE Alu 1 291 -21 2020 149 0 13 chr6 27024609 27024924 -162254630 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 27024927 27024955 -162254599 + AT_rich Low_complexity Low_complexity 1 28 0 2255 103 3 0 chr6 27024973 27025274 -162254280 + AluSx SINE Alu 11 312 0 212 363 8 0 chr6 27025516 27025640 -162253914 - L2 LINE L2 -1345 1969 1845 592 266 139 41 chr6 27026591 27026929 -162252625 - MLT1L LTR MaLR -125 490 120 980 135 0 0 chr6 27027330 27027471 -162252083 - FLAM_C SINE Alu -2 141 1 325 24 0 24 chr6 27027504 27027546 -162252008 + MADE1 DNA Mariner 1 41 -39 702 165 61 0 chr6 27027874 27027989 -162251565 + FLAM_A SINE Alu 2 123 -10 833 232 18 58 chr6 27028613 27028758 -162250796 - MER58A DNA MER1_type -2199 221 87 2082 101 0 11 chr6 27028758 27029035 -162250519 - AluSx SINE Alu -38 274 1 833 232 18 58 chr6 27029035 27029113 -162250441 - MER58A DNA MER1_type -2333 87 7 180 0 0 0 chr6 27029187 27029207 -162250347 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 224 30 30 0 chr6 27029254 27029287 -162250267 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1472 140 10 104 chr6 27029289 27029597 -162249957 - AluJo SINE Alu -33 279 1 944 193 20 5 chr6 27030082 27030284 -162249270 - L1MD3 LINE L1 0 7995 7791 1605 165 0 81 chr6 27030413 27030747 -162248807 + AluJo SINE Alu 1 307 -5 318 148 0 0 chr6 27030750 27030804 -162248750 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2249 109 3 0 chr6 27030910 27031204 -162248350 + AluSx SINE Alu 1 295 -17 2493 79 0 0 chr6 27031604 27031907 -162247647 + AluSc SINE Alu 1 303 -6 220 350 158 8 chr6 27032227 27032593 -162246961 - L2 LINE L2 -1198 2116 1696 384 239 90 32 chr6 27032703 27032858 -162246696 + L1MC4 LINE L1 7877 8040 -2 2004 132 35 0 chr6 27033093 27033380 -162246174 + AluSx SINE Alu 1 297 -15 2134 127 58 64 chr6 27034007 27034384 -162245170 + THE1C LTR MaLR 1 375 0 566 256 21 59 chr6 27034956 27035194 -162244360 - L1MC5 LINE L1 -73 7888 7660 2429 83 0 0 chr6 27035211 27035512 -162244042 - AluY SINE Alu -10 301 1 660 252 194 92 chr6 27035838 27036035 -162243519 - LTR33 LTR ERVL -27 494 319 1717 149 10 21 chr6 27036035 27036323 -162243231 + AluJo SINE Alu 11 295 -17 660 252 194 92 chr6 27036323 27036573 -162242981 - LTR33 LTR ERVL -202 319 1 708 257 81 5 chr6 27036704 27036914 -162242640 - MIR SINE MIR -14 248 23 555 234 26 75 chr6 27036914 27037054 -162242500 + L1MC4a LINE L1 5687 5813 -1995 840 146 0 36 chr6 27037054 27037191 -162242363 + FLAM_A SINE Alu 1 132 -1 555 234 26 75 chr6 27037191 27037276 -162242278 + L1MC4a LINE L1 5813 5901 -1907 535 219 109 57 chr6 27037486 27037590 -162241964 - MIR SINE MIR 0 262 165 2439 113 73 14 chr6 27037590 27037934 -162241620 - THE1B LTR MaLR 0 364 1 535 219 109 57 chr6 27037934 27038021 -162241533 - MIR SINE MIR -97 165 61 978 322 79 49 chr6 27038286 27038932 -162240622 - L3 LINE CR1 -729 848 174 2119 122 0 3 chr6 27038932 27039220 -162240334 + AluSc SINE Alu 1 287 -22 978 322 79 49 chr6 27039220 27039333 -162240221 - L3 LINE CR1 -1403 174 66 4283 123 18 5 chr6 27039333 27039957 -162239597 - MER41B LTR ERV1 0 635 4 2327 100 0 13 chr6 27040042 27040353 -162239201 - AluSx SINE Alu -5 307 1 1658 97 0 21 chr6 27041073 27041310 -162238244 - MER4E LTR ERV1 0 766 535 1494 104 135 12 chr6 27041301 27041560 -162237994 - MER4B LTR ERV1 -319 291 1 * 631 195 148 20 chr6 27041564 27041713 -162237841 + MER45A DNA AcHobo 10 177 -1 1809 158 47 0 chr6 27042325 27042623 -162236931 + AluSx SINE Alu 1 312 0 620 228 152 16 chr6 27042668 27042852 -162236702 + MER58C DNA MER1_type 7 215 0 1259 147 72 92 chr6 27042943 27043052 -162236502 + LTR54 LTR ERV1 1 111 -399 1814 164 7 0 chr6 27043052 27043350 -162236204 + AluJb SINE Alu 1 300 -12 1259 147 72 92 chr6 27043350 27043532 -162236022 + LTR54 LTR ERV1 111 286 -224 333 0 0 0 chr6 27043534 27043571 -162235983 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1928 117 4 11 chr6 27043574 27043847 -162235707 - AluSx SINE Alu -37 275 5 420 202 53 0 chr6 27043897 27043991 -162235563 + MER57A LTR ERV1 301 399 -4 1891 131 23 107 chr6 27044365 27044888 -162234666 - MER52C LTR ERV1 -699 579 1 260 186 34 34 chr6 27044888 27044946 -162234608 + MER97c DNA MER1_type? 172 229 -861 2444 110 27 54 chr6 27044959 27045369 -162234185 + MSTB1 LTR MaLR 1 399 -33 2153 113 3 0 chr6 27045369 27045661 -162233893 - AluSx SINE Alu -19 293 1 1259 171 91 48 chr6 27045661 27045940 -162233614 + MER97b DNA MER1_type? 468 766 -287 2227 87 47 0 chr6 27045940 27046239 -162233315 + AluSp SINE Alu 1 313 0 1259 171 91 48 chr6 27046239 27046310 -162233244 + MER97b DNA MER1_type? 766 833 -220 971 145 23 41 chr6 27046341 27046513 -162233041 - FRAM SINE Alu -8 168 1 452 225 48 48 chr6 27046532 27046719 -162232835 + MER97c DNA MER1_type? 904 1090 0 337 329 140 15 chr6 27046735 27047106 -162232448 + L2 LINE L2 1548 1871 -1443 2240 114 0 0 chr6 27047106 27047404 -162232150 - AluSx SINE Alu -14 298 1 337 329 140 15 chr6 27047404 27047602 -162231952 + L2 LINE L2 1871 2200 -1114 205 383 32 11 chr6 27047588 27047682 -162231872 - MIR SINE MIR -59 149 54 * 211 257 76 132 chr6 27047787 27047931 -162231623 + L2 LINE L2 2957 3092 -180 381 250 42 42 chr6 27048119 27048239 -162231315 + L2 LINE L2 3153 3272 0 4082 157 103 26 chr6 27048252 27049016 -162230538 - pTR5 LTR ERV1 0 2606 1524 2788 169 15 26 chr6 27049031 27049642 -162229912 - pTR5 LTR ERV1 -1093 1345 742 198 256 26 64 chr6 27049711 27049789 -162229765 + L3 LINE CR1 1493 1567 -10 1668 140 129 0 chr6 27050321 27050585 -162228969 - AluJo SINE Alu -4 298 1 1924 127 0 14 chr6 27050844 27051127 -162228427 - AluSx SINE Alu -4 308 30 1756 139 43 0 chr6 27051237 27051536 -162228018 + AluSx SINE Alu 1 312 0 271 115 0 4 chr6 27051575 27051621 -162227933 + Alu SINE Alu 1 38 -270 1993 125 4 4 chr6 27051747 27052028 -162227526 - AluSx SINE Alu -31 281 1 2173 120 0 3 chr6 27052033 27052333 -162227221 - AluSc SINE Alu -10 299 1 1026 112 0 0 chr6 27052333 27052467 -162227087 - AluSq/x SINE Alu -177 135 2 2319 92 0 10 chr6 27052468 27052771 -162226783 - AluSq SINE Alu -13 300 1 23 0 0 0 chr6 27052771 27052794 -162226760 + AT_rich Low_complexity Low_complexity 1 23 0 1650 182 0 27 chr6 27052843 27053020 -162226534 - AluJo SINE Alu -21 291 124 240 35 0 0 chr6 27053020 27053049 -162226505 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1650 182 0 27 chr6 27053049 27053168 -162226386 - AluJo SINE Alu -188 124 3 2441 91 0 0 chr6 27053199 27053507 -162226047 + AluY SINE Alu 1 308 -3 342 0 0 0 chr6 27053540 27053578 -162225976 + (TG)n Simple_repeat Simple_repeat 1 38 0 331 50 0 0 chr6 27053578 27053618 -162225936 - AluY SINE Alu -21 281 242 901 78 20 85 chr6 27053618 27053771 -162225783 - AluY SINE Alu -139 172 30 927 259 130 63 chr6 27053771 27054036 -162225518 - L1MC4a LINE L1 -1918 5890 5591 2556 69 0 16 chr6 27054036 27054354 -162225200 + AluSq SINE Alu 1 313 0 927 259 130 63 chr6 27054354 27054466 -162225088 - L1MC4a LINE L1 -2217 5591 5488 1132 245 86 16 chr6 27054468 27054967 -162224587 - MLT1E LTR MaLR -2 591 5 819 244 22 9 chr6 27054972 27055201 -162224353 - L1MC4a LINE L1 -2317 5491 5260 239 193 83 147 chr6 27055265 27055374 -162224180 - Charlie8 DNA MER1_type -2300 117 16 2441 65 3 10 chr6 27055444 27055751 -162223803 - AluY SINE Alu -6 305 1 180 0 0 0 chr6 27055915 27055935 -162223619 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 712 186 9 0 chr6 27055964 27056107 -162223447 - AluSg/x SINE Alu 0 313 170 2177 105 0 10 chr6 27056227 27056521 -162223033 + AluSg SINE Alu 1 291 -19 353 246 107 109 chr6 27056521 27056641 -162222913 - L1MC5 LINE L1 -39 7922 7803 1098 196 33 9 chr6 27056641 27056855 -162222699 + MER20 DNA MER1_type 1 219 0 353 246 107 109 chr6 27056855 27057196 -162222358 - L1MC5 LINE L1 -158 7803 7462 1241 52 0 13 chr6 27057232 27057386 -162222168 + AluSg/x SINE Alu 156 307 -5 249 264 0 42 chr6 27057439 27057511 -162222043 + L2 LINE L2 3240 3308 -5 291 221 147 21 chr6 27058896 27058991 -162220563 + MER112 DNA MER1_type 148 254 -6 2037 90 0 0 chr6 27059094 27059350 -162220204 - AluSx SINE Alu -17 295 40 547 76 0 0 chr6 27059367 27059433 -162220121 - AluS SINE Alu -246 67 2 1151 186 102 3 chr6 27060453 27060738 -162218816 - L1MC4a LINE L1 -1601 4545 4233 22 23 0 45 chr6 27061194 27061210 -162218344 + AT_rich Low_complexity Low_complexity 1 16 -26 1446 168 24 28 chr6 27061210 27061501 -162218053 + AluJo SINE Alu 1 290 -22 22 23 0 45 chr6 27061501 27061528 -162218026 + AT_rich Low_complexity Low_complexity 16 42 0 31 68 0 0 chr6 27061729 27061788 -162217766 + AT_rich Low_complexity Low_complexity 1 59 0 409 214 34 43 chr6 27061792 27061909 -162217645 - L1MC5 LINE L1 -109 7852 7737 337 278 61 35 chr6 27061977 27062092 -162217462 + MIR3 SINE MIR 42 159 -49 2113 113 17 10 chr6 27063911 27064213 -162215341 + AluSx SINE Alu 2 305 -7 26 0 0 0 chr6 27064213 27064239 -162215315 + AT_rich Low_complexity Low_complexity 1 26 0 1606 191 24 14 chr6 27064797 27065091 -162214463 + AluJo SINE Alu 1 297 -15 303 185 0 0 chr6 27065428 27065482 -162214072 - MIR SINE MIR -70 138 85 2582 233 61 40 chr6 27065939 27066807 -162212747 + L1MC4 LINE L1 6699 7584 -458 21 71 0 0 chr6 27066927 27066969 -162212585 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr6 27067045 27067077 -162212477 + AT_rich Low_complexity Low_complexity 1 32 0 537 281 65 48 chr6 27067632 27067863 -162211691 + MIR SINE MIR 28 262 0 193 326 21 63 chr6 27069227 27069322 -162210232 + MER5A DNA MER1_type 74 164 -25 2265 97 10 0 chr6 27069679 27069977 -162209577 - AluSq SINE Alu -12 301 1 1593 155 34 0 chr6 27070030 27070294 -162209260 - AluJb SINE Alu -39 273 1 210 176 118 0 chr6 27070301 27070352 -162209202 + MIR SINE MIR 132 188 -74 509 213 94 0 chr6 27070407 27070534 -162209020 + MER3 DNA MER1_type 1 139 -70 707 203 174 0 chr6 27070807 27071048 -162208506 + L1ME1 LINE L1 4997 5279 -867 2147 220 95 14 chr6 27071053 27071631 -162207923 + L1ME1 LINE L1 5357 5981 -185 1834 158 3 10 chr6 27071772 27072070 -162207484 + AluSx SINE Alu 1 296 -16 2128 130 13 0 chr6 27072305 27072612 -162206942 + AluSx SINE Alu 1 311 -1 714 256 143 12 chr6 27072657 27072993 -162206561 + L1MC/D LINE L1 3712 4091 -2055 948 218 107 44 chr6 27073317 27073588 -162205966 + LTR16C LTR ERVL 196 483 -8 280 285 56 42 chr6 27073863 27074007 -162205547 + HAL1 LINE L1 2 147 -2360 636 240 45 0 chr6 27074047 27074201 -162205353 + L1MC/D LINE L1 5616 5776 -2032 322 235 15 0 chr6 27074201 27074269 -162205285 - Tigger2a DNA MER2_type 0 444 376 1337 73 11 6 chr6 27074271 27074450 -162205104 - AluSg/x SINE Alu 0 312 133 2199 125 3 3 chr6 27074493 27074805 -162204749 - AluSx SINE Alu 0 312 1 1659 137 59 7 chr6 27074834 27075105 -162204449 - AluJo SINE Alu -27 285 1 410 255 179 0 chr6 27075113 27075219 -162204335 - FLAM_A SINE Alu -8 125 1 2094 133 29 55 chr6 27075223 27075349 -162204205 - Tigger2a DNA MER2_type -2336 372 244 2267 78 31 3 chr6 27075349 27075642 -162203912 - AluSc SINE Alu -8 301 1 2094 133 29 55 chr6 27075642 27075897 -162203657 - Tigger2a DNA MER2_type -2464 244 1 1105 262 141 11 chr6 27076368 27076760 -162202794 + HAL1 LINE L1 1597 2061 -446 2262 102 0 10 chr6 27076760 27077064 -162202490 + AluSg SINE Alu 1 301 -9 1105 262 141 11 chr6 27077064 27077140 -162202414 + HAL1 LINE L1 2061 2126 -381 833 144 8 30 chr6 27077163 27077295 -162202259 - FLAM_C SINE Alu -14 129 1 859 223 81 58 chr6 27077298 27077643 -162201911 + HAL1 LINE L1 2155 2507 0 726 147 0 9 chr6 27077676 27077785 -162201769 + FLAM_C SINE Alu 11 118 -25 575 200 9 19 chr6 27077834 27077939 -162201615 + FRAM SINE Alu 1 98 -78 640 188 0 18 chr6 27077940 27078052 -162201502 + LTR8 LTR ERV1 533 642 -49 481 193 0 0 chr6 27078070 27078158 -162201396 + AluJ/FRAM SINE Alu 225 312 0 22 0 0 0 chr6 27079159 27079181 -162200373 + AT_rich Low_complexity Low_complexity 1 22 0 3436 186 12 67 chr6 27079402 27080133 -162199421 - LTR8 LTR ERV1 0 691 1 1571 152 54 51 chr6 27180741 27181077 -162098477 + MSTA LTR MaLR 90 426 -2 662 189 26 26 chr6 27181078 27181231 -162098323 + MER2 DNA MER2_type 168 320 -25 861 181 63 19 chr6 27181242 27181447 -162098107 - L1MC4 LINE L1 -1364 6678 6465 625 257 102 82 chr6 27182640 27182938 -162096616 - L1ME4a LINE L1 -96 6025 5715 1677 162 55 17 chr6 27182938 27183228 -162096326 - AluJb SINE Alu -11 301 1 625 257 102 82 chr6 27183228 27183330 -162096224 - L1ME4a LINE L1 -406 5715 5617 219 333 0 17 chr6 27183837 27183897 -162095657 + L3b LINE CR1 1515 1573 -10 1801 181 13 0 chr6 27184146 27184444 -162095110 - AluSx SINE Alu -5 307 6 234 0 0 0 chr6 27184764 27184790 -162094764 + (TG)n Simple_repeat Simple_repeat 1 26 0 1949 176 0 6 chr6 27185228 27185540 -162094014 + AluSx SINE Alu 2 311 -1 1979 138 0 0 chr6 27185549 27185824 -162093730 + AluSx SINE Alu 1 275 -37 192 40 0 0 chr6 27185828 27185853 -162093701 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1566 202 31 22 chr6 27186138 27186588 -162092966 - L1ME LINE L1 -3549 2531 2078 1775 177 0 0 chr6 27186595 27186907 -162092647 + AluJb SINE Alu 1 312 0 424 336 41 31 chr6 27187187 27187505 -162092049 + MER68 LTR ERV1 242 562 0 2194 129 0 19 chr6 27187533 27187850 -162091704 - AluSx SINE Alu -1 311 1 331 284 55 9 chr6 27187850 27187959 -162091595 - L1ME LINE L1 -4152 2109 1996 852 274 34 70 chr6 27187970 27188406 -162091148 - L1ME LINE L1 -5219 851 477 2688 26 0 3 chr6 27188406 27188716 -162090838 - AluY SINE Alu -2 309 1 852 274 34 70 chr6 27188716 27189059 -162090495 - L1ME LINE L1 -5593 477 123 301 282 80 15 chr6 27189112 27189507 -162090047 - L1MCc LINE L1 -4958 1465 1176 277 242 76 38 chr6 27190026 27190183 -162089371 - L1MCc LINE L1 -6236 187 25 1988 123 56 0 chr6 27190221 27190506 -162089048 + AluSx SINE Alu 1 301 -11 1545 185 75 4 chr6 27190526 27190807 -162088747 + AluJb SINE Alu 1 301 -11 263 269 214 55 chr6 27190875 27191020 -162088534 + MIR SINE MIR 75 242 -20 339 318 34 27 chr6 27191022 27191170 -162088384 - L2 LINE L2 -1 3312 3164 244 284 88 34 chr6 27191337 27191485 -162088069 + MLT1J LTR MaLR 1 156 -355 215 194 32 0 chr6 27191538 27191600 -162087954 + (TA)n Simple_repeat Simple_repeat 1 64 0 420 20 0 0 chr6 27191625 27191674 -162087880 + (CA)n Simple_repeat Simple_repeat 2 50 0 371 271 16 80 chr6 27191762 27191950 -162087604 + MLT1J LTR MaLR 328 503 -8 271 238 173 18 chr6 27191956 27192124 -162087430 + L1ME LINE L1 5277 5470 -889 300 287 66 16 chr6 27192182 27192304 -162087250 + L1ME LINE L1 5692 5819 -302 1758 154 54 7 chr6 27193331 27193610 -162085944 + AluJb SINE Alu 1 292 -20 28 99 0 0 chr6 27193712 27193803 -162085751 + AT_rich Low_complexity Low_complexity 1 91 0 520 221 131 14 chr6 27194407 27194437 -162085117 + MER5B DNA MER1_type 17 42 -136 2014 75 0 8 chr6 27194437 27194689 -162084865 - AluSc SINE Alu -14 295 46 520 221 131 14 chr6 27194689 27194803 -162084751 + MER5B DNA MER1_type 42 178 0 22 0 0 0 chr6 27194996 27195018 -162084536 + AT_rich Low_complexity Low_complexity 1 22 0 674 205 0 8 chr6 27195018 27195145 -162084409 - FLAM_C SINE Alu -17 126 1 250 333 56 0 chr6 27195348 27195456 -162084098 - MIR SINE MIR -74 188 75 1824 182 0 10 chr6 27196124 27196432 -162083122 - AluJb SINE Alu -7 305 1 1116 145 70 35 chr6 27196516 27196716 -162082838 + AluJo SINE Alu 83 289 -23 551 306 57 26 chr6 27196979 27197208 -162082346 + MIR SINE MIR 21 256 -6 26 0 0 0 chr6 27198106 27198132 -162081422 + AT_rich Low_complexity Low_complexity 1 26 0 545 118 0 35 chr6 27198570 27198655 -162080899 + AluJ/FLAM SINE Alu 1 82 -230 2134 120 13 3 chr6 27198723 27199023 -162080531 + AluSx SINE Alu 1 303 -9 358 304 154 8 chr6 27199058 27199311 -162080243 + L1ME LINE L1 5515 5804 -317 1952 142 0 0 chr6 27199333 27199608 -162079946 + AluSx SINE Alu 22 296 -16 301 374 82 0 chr6 27199881 27200052 -162079502 - L3b LINE CR1 -126 1457 1273 1879 183 0 3 chr6 27200349 27200661 -162078893 + AluJo SINE Alu 1 311 -1 2256 112 0 0 chr6 27200679 27200973 -162078581 + AluSx SINE Alu 1 294 -18 240 239 15 60 chr6 27201337 27201404 -162078150 + MIR SINE MIR 38 101 -107 34 42 0 0 chr6 27202294 27202342 -162077212 + AT_rich Low_complexity Low_complexity 1 48 0 35 63 0 0 chr6 27202986 27203049 -162076505 + AT_rich Low_complexity Low_complexity 1 63 0 357 24 0 0 chr6 27203751 27203793 -162075761 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1977 106 0 63 chr6 27203793 27204094 -162075460 + AluSx SINE Alu 6 287 -25 378 282 120 7 chr6 27204113 27204255 -162075299 - MIR SINE MIR -2 260 103 611 146 31 0 chr6 27204262 27204358 -162075196 + FRAM SINE Alu 55 153 -23 186 239 0 22 chr6 27204831 27204877 -162074677 + MIR SINE MIR 107 151 -111 391 298 86 71 chr6 27205002 27205169 -162074385 + L1MEc LINE L1 511 674 -5722 743 202 16 0 chr6 27205169 27205298 -162074256 + FLAM_A SINE Alu 1 131 -2 391 298 86 71 chr6 27205298 27205469 -162074085 + L1MEc LINE L1 674 854 -5542 24 0 0 0 chr6 27206037 27206061 -162073493 + AT_rich Low_complexity Low_complexity 1 24 0 2438 84 0 0 chr6 27206061 27206372 -162073182 + AluY SINE Alu 1 311 0 370 0 40 0 chr6 27206396 27206446 -162073108 + (TG)n Simple_repeat Simple_repeat 1 52 0 2732 77 61 56 chr6 27206805 27207249 -162072305 + L1MA5A LINE L1 5846 6291 -6 24 53 0 0 chr6 27207251 27207289 -162072265 + AT_rich Low_complexity Low_complexity 1 38 0 1563 82 134 0 chr6 27207292 27207523 -162072031 + AluY SINE Alu 1 262 -49 963 106 0 0 chr6 27207525 27207667 -162071887 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 2083 133 0 10 chr6 27207671 27207973 -162071581 + AluSg SINE Alu 2 300 -10 193 79 184 0 chr6 27208141 27208179 -162071375 + MIR SINE MIR 212 256 -6 272 228 165 25 chr6 27208290 27208369 -162071185 + MIR SINE MIR 56 123 -85 1352 216 34 60 chr6 27208477 27208861 -162070693 + MLT1B LTR MaLR 6 379 -11 1090 24 16 0 chr6 27208920 27209047 -162070507 - AluY SINE Alu -1 310 182 198 103 0 0 chr6 27209070 27209099 -162070455 + (A)n Simple_repeat Simple_repeat 1 29 0 2169 99 21 0 chr6 27209399 27209683 -162069871 + AluSq SINE Alu 7 296 -17 1194 71 0 22 chr6 27209692 27209874 -162069680 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 285 246 66 0 chr6 27209961 27210022 -162069532 - L2 LINE L2 0 3313 3249 479 293 52 11 chr6 27210242 27210416 -162069138 + MIR SINE MIR 82 262 0 1382 217 82 85 chr6 27211879 27211986 -162067568 + MLT1E3 LTR MaLR 61 167 -459 1115 105 52 0 chr6 27211986 27212171 -162067383 + L1PA8 LINE L1 5994 6186 0 297 0 0 0 chr6 27212170 27212203 -162067351 + (GA)n Simple_repeat Simple_repeat 2 34 0 1382 217 82 85 chr6 27212171 27212205 -162067349 + MLT1E3 LTR MaLR 167 200 -426 1998 136 3 23 chr6 27212205 27212515 -162067039 + AluJb SINE Alu 1 304 -8 186 43 0 0 chr6 27212515 27212538 -162067016 + (GA)n Simple_repeat Simple_repeat 2 24 0 1382 217 82 85 chr6 27212538 27212836 -162066718 + MLT1E3 LTR MaLR 198 452 -174 535 189 0 9 chr6 27212955 27213061 -162066493 - L1ME1 LINE L1 -261 5905 5801 988 211 0 0 chr6 27213072 27213243 -162066311 - AluJb SINE Alu -5 307 137 2501 67 0 0 chr6 27213246 27213546 -162066008 - AluY SINE Alu -11 300 1 1279 231 16 37 chr6 27213549 27213926 -162065628 - L1M4 LINE L1 -1902 4244 3876 1092 251 31 25 chr6 27213923 27214370 -162065184 - L1M4 LINE L1 -2629 3517 3068 * 978 291 71 42 chr6 27214359 27214906 -162064648 - L1MEc LINE L1 -5795 601 39 * 1505 282 81 36 chr6 27214922 27215753 -162063801 - HAL1 LINE L1 -1542 965 98 2276 97 0 23 chr6 27215753 27216061 -162063493 - AluSg1 SINE Alu -8 301 1 200 360 0 0 chr6 27216638 27216724 -162062830 + (CCA)n Simple_repeat Simple_repeat 2 87 0 242 379 0 16 chr6 27216743 27216925 -162062629 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1666 172 41 0 chr6 27216992 27217282 -162062272 + AluJo SINE Alu 1 302 -10 1918 149 0 19 chr6 27217385 27217693 -162061861 - AluJb SINE Alu -10 302 1 912 173 78 31 chr6 27218090 27218281 -162061273 - L1MC2 LINE L1 -16 6328 6129 216 372 59 30 chr6 27218379 27218718 -162060836 + L2 LINE L2 1732 2080 -1234 279 0 0 0 chr6 27218732 27218763 -162060791 + (TC)n Simple_repeat Simple_repeat 2 32 0 845 230 5 58 chr6 27218767 27218958 -162060596 + MLT1F LTR MaLR 6 186 -356 211 265 0 0 chr6 27219012 27219061 -162060493 + L2 LINE L2 3261 3309 -4 2086 107 0 24 chr6 27219394 27219706 -162059848 + AluSx SINE Alu 1 305 0 234 263 84 31 chr6 27219727 27219844 -162059710 + MIR SINE MIR 33 139 -69 470 244 48 77 chr6 27220224 27220433 -162059121 - L1MC5 LINE L1 -32 7929 7727 729 174 0 41 chr6 27221016 27221137 -162058417 - FLAM_C SINE Alu -26 117 2 207 311 131 0 chr6 27222166 27222288 -162057266 - L2 LINE L2 -6 3307 3170 276 154 0 0 chr6 27223522 27223574 -162055980 + GA-rich Low_complexity Low_complexity 2 53 0 23 0 0 0 chr6 27223777 27223800 -162055754 + GC_rich Low_complexity Low_complexity 1 23 0 312 27 0 0 chr6 27225417 27225454 -162054100 + (CA)n Simple_repeat Simple_repeat 1 37 0 2463 82 0 0 chr6 27226113 27226419 -162053135 + AluSp SINE Alu 1 306 -7 265 211 276 0 chr6 27226941 27227017 -162052537 - Charlie7 DNA MER1_type -2515 97 1 294 288 234 49 chr6 27227032 27227258 -162052296 + L2 LINE L2 3005 3272 0 1999 137 0 17 chr6 27227998 27228298 -162051256 - AluSx SINE Alu -17 295 1 186 341 47 54 chr6 27228539 27228668 -162050886 + L2 LINE L2 3139 3266 -6 2190 116 7 3 chr6 27228708 27229010 -162050544 + AluSx SINE Alu 1 303 -9 1918 149 0 3 chr6 27230165 27230453 -162049101 - AluJo SINE Alu -25 287 1 724 130 0 0 chr6 27231714 27231814 -162047740 - HY3 scRNA scRNA -1 100 1 858 263 21 29 chr6 27231820 27232063 -162047491 - MIR SINE MIR -1 261 21 724 304 103 59 chr6 27232189 27232597 -162046957 - L2 LINE L2 -17 3255 2830 201 307 40 30 chr6 27232800 27232901 -162046653 + MIR SINE MIR 149 250 -12 565 215 74 13 chr6 27233154 27233303 -162046251 + MER103 DNA DNA 2 159 -7 3771 166 67 15 chr6 27233661 27234381 -162045173 - L1MD1 LINE L1 0 6242 5482 1771 146 11 8 chr6 27234381 27234649 -162044905 - AluJb SINE Alu -17 295 27 3771 166 67 15 chr6 27234649 27234663 -162044891 - L1MD1 LINE L1 -760 5482 5470 1287 131 49 134 chr6 27235086 27235392 -162044162 - AluJo SINE Alu -32 280 1 360 0 0 0 chr6 27237546 27237586 -162041968 + (TG)n Simple_repeat Simple_repeat 2 41 0 1474 194 25 0 chr6 27237666 27237945 -162041609 - AluJo SINE Alu -12 300 15 333 93 107 0 chr6 27237949 27238024 -162041530 + CT-rich Low_complexity Low_complexity 4 86 0 1700 178 14 0 chr6 27238026 27238302 -162041252 - AluJb SINE Alu -32 280 1 773 336 121 12 chr6 27238678 27239101 -162040453 - L3 LINE CR1 -11 1566 1098 21 36 0 0 chr6 27239494 27239522 -162040032 + AT_rich Low_complexity Low_complexity 1 28 0 379 206 213 62 chr6 27239598 27239758 -162039796 - L1ME LINE L1 -314 5807 5624 386 0 0 39 chr6 27241164 27241215 -162038339 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 279 0 0 0 chr6 27241216 27241247 -162038307 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 640 207 8 16 chr6 27241251 27241372 -162038182 - FLAM_A SINE Alu -13 120 1 796 271 9 9 chr6 27242253 27242471 -162037083 + MIR SINE MIR 45 262 0 21 0 0 0 chr6 27242550 27242571 -162036983 + AT_rich Low_complexity Low_complexity 1 21 0 2297 88 10 0 chr6 27243036 27243332 -162036222 - AluSp SINE Alu -14 299 1 2310 105 0 3 chr6 27243448 27243752 -162035802 - AluSx SINE Alu -9 303 1 962 197 22 75 chr6 27243810 27243974 -162035580 - MER20 DNA MER1_type -3 216 66 2322 92 0 10 chr6 27243974 27244277 -162035277 + AluSx SINE Alu 1 300 -12 962 197 22 75 chr6 27244277 27244340 -162035214 - MER20 DNA MER1_type -153 66 1 960 178 15 61 chr6 27244589 27244665 -162034889 + MER5A DNA MER1_type 1 79 -110 1732 165 62 0 chr6 27244665 27244956 -162034598 + AluSx SINE Alu 1 309 -3 960 178 15 61 chr6 27244956 27245076 -162034478 + MER5A DNA MER1_type 79 188 -1 204 229 21 0 chr6 27245940 27245988 -162033566 + MER5B DNA MER1_type 1 49 -129 24 0 0 0 chr6 27247522 27247546 -162032008 + AT_rich Low_complexity Low_complexity 1 24 0 369 282 69 95 chr6 27248387 27248649 -162030905 + L3 LINE CR1 1244 1498 -79 2451 127 3 9 chr6 27248649 27248988 -162030566 - MER1B DNA MER1_type 0 337 1 2335 174 46 60 chr6 27250206 27250505 -162029049 - L1MB4 LINE L1 -6 6174 5885 2151 159 0 26 chr6 27250505 27250850 -162028704 + MER1B DNA MER1_type 2 337 0 2335 174 46 60 chr6 27250850 27251135 -162028419 - L1MB4 LINE L1 -295 5885 5598 2217 93 10 7 chr6 27251160 27251461 -162028093 - AluSq SINE Alu -11 302 1 2304 96 3 3 chr6 27252658 27252960 -162026594 - AluSg SINE Alu -8 302 1 269 291 109 18 chr6 27253191 27253301 -162026253 - L2 LINE L2 -4 3268 3149 892 125 29 29 chr6 27253332 27253468 -162026086 - AluJo SINE Alu -176 136 1 877 164 105 0 chr6 27253505 27253657 -162025897 + AluSg/x SINE Alu 135 302 -8 2415 169 18 39 chr6 27253658 27254047 -162025507 - L1MB7 LINE L1 -28 6156 5779 2222 116 0 0 chr6 27254047 27254348 -162025206 - AluSg SINE Alu -9 301 1 2415 169 18 39 chr6 27254348 27254473 -162025081 - L1MB7 LINE L1 -405 5779 5653 226 356 10 29 chr6 27254541 27254645 -162024909 - L2 LINE L2 -176 3096 2995 963 249 33 4 chr6 27254652 27254897 -162024657 - MER112 DNA MER1_type -4 252 1 185 306 65 0 chr6 27255051 27255113 -162024441 - L2 LINE L2 0 3313 3248 1877 112 0 8 chr6 27255220 27255488 -162024066 + AluSx SINE Alu 42 307 -5 502 276 53 88 chr6 27255490 27255922 -162023632 + HAL1 LINE L1 16 432 -2075 234 0 0 0 chr6 27257186 27257212 -162022342 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 27257410 27257439 -162022115 + AT_rich Low_complexity Low_complexity 1 29 0 2242 75 0 0 chr6 27258500 27258767 -162020787 + AluSg SINE Alu 28 294 -16 264 243 0 0 chr6 27258798 27258872 -162020682 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 497 274 128 5 chr6 27259276 27259471 -162020083 - MIR SINE MIR -1 261 45 405 214 165 0 chr6 27260105 27260262 -162019292 + MER5A DNA MER1_type 4 189 0 2156 98 35 0 chr6 27260704 27260990 -162018564 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 27260990 27261011 -162018543 + AT_rich Low_complexity Low_complexity 1 21 0 621 168 47 0 chr6 27261011 27261118 -162018436 - HY1 scRNA scRNA 0 112 1 1403 183 55 48 chr6 27261425 27261715 -162017839 - AluJo SINE Alu -15 297 6 1281 179 50 56 chr6 27261843 27262145 -162017409 - AluJo SINE Alu -12 300 1 35 24 0 0 chr6 27263602 27263644 -162015910 + AT_rich Low_complexity Low_complexity 1 42 0 930 88 8 0 chr6 27264045 27264170 -162015384 - AluSg/x SINE Alu -8 304 179 297 266 11 11 chr6 27264751 27264845 -162014709 - MIR SINE MIR -2 260 167 1588 118 45 5 chr6 27265075 27265295 -162014259 + MER30 DNA MER1_type 1 229 -1 32 43 0 0 chr6 27265902 27265948 -162013606 + AT_rich Low_complexity Low_complexity 1 46 0 2320 83 7 0 chr6 27265948 27266238 -162013316 - AluY SINE Alu -19 292 1 663 192 15 15 chr6 27266241 27266371 -162013183 - FLAM_A SINE Alu -3 130 1 2215 120 0 0 chr6 27266403 27266703 -162012851 - AluSx SINE Alu -12 300 1 240 185 0 0 chr6 27266757 27266811 -162012743 + (CA)n Simple_repeat Simple_repeat 1 54 0 1733 104 0 89 chr6 27267582 27267862 -162011692 + AluJo SINE Alu 1 255 -57 398 247 297 27 chr6 27268861 27269262 -162010292 - L2 LINE L2 -1 3312 2804 398 287 255 30 chr6 27269928 27270159 -162009395 - L2 LINE L2 0 3313 3135 2166 97 3 3 chr6 27270159 27270448 -162009106 - AluSc SINE Alu -20 289 1 398 287 255 30 chr6 27270448 27270796 -162008758 - L2 LINE L2 -178 3135 2866 865 240 33 0 chr6 27270796 27270979 -162008575 + MER5A DNA MER1_type 1 189 0 398 287 255 30 chr6 27270979 27271096 -162008458 - L2 LINE L2 -447 2866 2460 492 132 29 0 chr6 27271115 27271183 -162008371 - AluSg/x SINE Alu -26 284 215 569 271 112 93 chr6 27271196 27271635 -162007919 - L2 LINE L2 -901 2413 1967 185 322 113 0 chr6 27272274 27272389 -162007165 - MIR SINE MIR -16 246 119 26 0 0 0 chr6 27273085 27273111 -162006443 + AT_rich Low_complexity Low_complexity 1 26 0 486 291 37 63 chr6 27273363 27273631 -162005923 + Charlie8 DNA MER1_type 1 261 -2156 944 96 0 89 chr6 27274838 27274984 -162004570 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 27275169 27275190 -162004364 + (T)n Simple_repeat Simple_repeat 1 21 0 321 378 41 12 chr6 27275695 27275867 -162003687 + L2 LINE L2 2581 2757 -557 671 126 0 63 chr6 27276308 27276419 -162003135 - FLAM_A SINE Alu -14 128 25 189 274 20 0 chr6 27276552 27276603 -162002951 - L2 LINE L2 0 3313 3262 786 266 154 11 chr6 27276608 27276984 -162002570 - L2 LINE L2 -631 2683 2254 417 86 0 0 chr6 27277015 27277073 -162002481 + (CA)n Simple_repeat Simple_repeat 2 59 0 293 231 128 60 chr6 27277187 27277304 -162002250 + MLT1K LTR MaLR 188 312 -276 417 173 36 101 chr6 27277489 27277561 -162001993 + MER103 DNA DNA 34 94 -72 1648 162 10 20 chr6 27277561 27277858 -162001696 + AluJo SINE Alu 1 294 -18 417 173 36 101 chr6 27277858 27277924 -162001630 + MER103 DNA DNA 94 163 -3 32 0 0 0 chr6 27278908 27278940 -162000614 + AT_rich Low_complexity Low_complexity 1 32 0 671 222 162 0 chr6 27280705 27280890 -161998664 + MIR SINE MIR 8 222 -40 283 238 0 60 chr6 27280957 27281041 -161998513 + L2 LINE L2 3234 3312 -1 2111 99 0 0 chr6 27282287 27282560 -161996994 + AluSx SINE Alu 33 305 -7 287 182 152 15 chr6 27284035 27284101 -161995453 + MIR SINE MIR 50 124 -138 243 0 0 0 chr6 27285058 27285085 -161994469 + (T)n Simple_repeat Simple_repeat 1 27 0 645 278 45 10 chr6 27285337 27285535 -161994019 - MIR SINE MIR -27 235 31 2004 112 29 0 chr6 27285722 27286000 -161993554 + AluSx SINE Alu 1 286 -26 318 232 126 46 chr6 27286540 27286691 -161992863 - MIR3 SINE MIR -41 167 5 281 259 0 0 chr6 27286730 27286784 -161992770 + MIR SINE MIR 23 76 -186 214 350 0 38 chr6 27287035 27287115 -161992439 + L3b LINE CR1 1503 1579 -4 6431 269 131 27 chr6 27287711 27289892 -161989662 + L2 LINE L2 2 2591 -722 2159 131 0 0 chr6 27289892 27290197 -161989357 - AluSx SINE Alu -7 305 1 6431 269 131 27 chr6 27290197 27290994 -161988560 + L2 LINE L2 2591 3304 -9 1400 207 7 3 chr6 27291873 27292158 -161987396 - L1MD3 LINE L1 0 7995 7710 4594 159 43 47 chr6 27292244 27292421 -161987133 - MER6 DNA MER2_type 0 865 689 2181 84 28 0 chr6 27292421 27292707 -161986847 - AluSx SINE Alu -13 299 6 4594 159 43 47 chr6 27292707 27292782 -161986772 - MER6 DNA MER2_type -176 689 615 2393 98 0 0 chr6 27292782 27293089 -161986465 + AluSc SINE Alu 1 307 -2 4594 159 43 47 chr6 27293089 27293704 -161985850 - MER6 DNA MER2_type -250 615 1 301 305 31 31 chr6 27293748 27293876 -161985678 + Charlie8 DNA MER1_type 19 146 -2271 2371 100 0 0 chr6 27294006 27294307 -161985247 - AluSc SINE Alu -8 301 1 484 297 130 23 chr6 27294542 27294842 -161984712 + MER102b DNA MER1_type 2 333 -8 1568 172 45 3 chr6 27295370 27295688 -161983866 + MER33 DNA MER1_type 1 324 0 439 316 107 20 chr6 27295917 27296113 -161983441 + MIR SINE MIR 2 214 -48 476 241 193 0 chr6 27297484 27297663 -161981891 - MIR SINE MIR 0 262 45 877 194 74 69 chr6 27298163 27298380 -161981174 + MER20 DNA MER1_type 2 219 0 1610 157 7 65 chr6 27298444 27298750 -161980804 - AluJo SINE Alu -15 297 10 300 303 0 0 chr6 27298870 27298946 -161980608 + MLT1L LTR MaLR 374 449 -166 196 320 61 48 chr6 27299063 27299210 -161980344 - L3 LINE CR1 -127 1450 1302 1011 213 22 100 chr6 27299651 27299970 -161979584 + AluYb8 SINE Alu 11 304 -14 638 144 48 24 chr6 27300045 27300170 -161979384 - L1MB2 LINE L1 -1 6170 6043 2836 19 0 0 chr6 27300328 27300637 -161978917 - AluYb8 SINE Alu -9 309 1 1877 167 0 7 chr6 27301594 27301888 -161977666 + AluSx SINE Alu 15 306 -6 812 198 146 28 chr6 27305915 27306221 -161973333 + MSTC LTR MaLR 1 368 -59 213 159 0 0 chr6 27306242 27306286 -161973268 + A-rich Low_complexity Low_complexity 1 44 0 331 167 0 0 chr6 27306308 27306362 -161973192 + MSTC LTR MaLR 342 395 -1 2019 115 18 0 chr6 27306673 27306975 -161972579 + AluSx SINE Alu 1 307 0 2215 138 0 0 chr6 27307033 27307345 -161972209 + AluSx SINE Alu 1 312 0 274 192 333 33 chr6 27307471 27307591 -161971963 + MER103 DNA DNA 8 163 -3 1469 171 120 116 chr6 27308033 27308225 -161971329 - L1MD2 LINE L1 -34 6325 6135 1627 154 33 40 chr6 27308225 27308524 -161971030 - AluJb SINE Alu -15 297 1 1469 171 120 116 chr6 27308524 27308807 -161970747 - L1MD2 LINE L1 -224 6135 5840 2097 99 0 3 chr6 27308834 27309116 -161970438 - AluSq SINE Alu -3 310 30 273 325 49 41 chr6 27309132 27309255 -161970299 - MIR3 SINE MIR -73 135 12 21 36 0 0 chr6 27309355 27309383 -161970171 + AT_rich Low_complexity Low_complexity 1 28 0 1534 199 10 29 chr6 27309833 27310139 -161969415 - AluJb SINE Alu -12 300 1 1359 187 56 49 chr6 27310293 27310577 -161968977 - AluJo SINE Alu -26 286 1 990 265 70 40 chr6 27310579 27310953 -161968601 + L2 LINE L2 2928 3312 -1 2078 121 0 4 chr6 27312059 27312340 -161967214 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 27313660 27313681 -161965873 + AT_rich Low_complexity Low_complexity 1 21 0 14394 192 46 19 chr6 27315056 27317870 -161961684 - L1PB3 LINE L1 -7 6204 3469 2181 96 10 7 chr6 27317870 27318162 -161961392 - AluSc SINE Alu -16 293 1 14394 192 46 19 chr6 27318162 27320372 -161959182 - L1PB3 LINE L1 -2742 3469 964 2128 122 3 0 chr6 27320372 27320660 -161958894 - AluSq SINE Alu -24 289 1 14394 192 46 19 chr6 27320660 27321647 -161957907 - L1PB3 LINE L1 -5247 964 6 3877 269 82 30 chr6 27321616 27323178 -161956376 - L1PA15-16 LINE L1 -5223 1640 9 * 640 317 32 18 chr6 27323226 27323447 -161956107 + MIR SINE MIR 18 241 -21 191 219 0 0 chr6 27323497 27323529 -161956025 - L2 LINE L2 -96 3176 3145 291 259 86 12 chr6 27323621 27323702 -161955852 - MER91C DNA MER1_type -30 110 24 1097 219 27 5 chr6 27324546 27324765 -161954789 - MER58A DNA MER1_type 0 224 1 250 321 92 9 chr6 27324996 27325105 -161954449 - L2 LINE L2 -5 3267 3150 2316 223 60 75 chr6 27325616 27326378 -161953176 - MER21B LTR ERV1 -62 869 27 1736 124 0 0 chr6 27326383 27326617 -161952937 - AluSx SINE Alu -17 295 62 786 71 0 0 chr6 27326617 27326715 -161952839 - LTR12 LTR ERV1 -2 712 615 381 147 54 76 chr6 27326724 27326816 -161952738 - LTR30 LTR ERV1 -75 624 230 1655 71 0 174 chr6 27326820 27327131 -161952423 - LTR12 LTR ERV1 -440 274 18 485 169 60 0 chr6 27327131 27327214 -161952340 - AluS SINE Alu -224 89 2 623 183 29 0 chr6 27327879 27327983 -161951571 + U6 snRNA snRNA 1 107 0 2159 94 3 3 chr6 27328111 27328419 -161951135 - AluSx SINE Alu 0 308 1 432 333 62 35 chr6 27329239 27329383 -161950171 - L2 LINE L2 -7 3265 3118 315 336 93 22 chr6 27329516 27329742 -161949812 - L2 LINE L2 -451 2863 2622 292 260 0 83 chr6 27329769 27329865 -161949689 - L2 LINE L2 -5 3308 3221 21 57 0 0 chr6 27330406 27330441 -161949113 + AT_rich Low_complexity Low_complexity 1 35 0 1841 130 41 4 chr6 27330553 27330823 -161948731 - AluSx SINE Alu -32 280 1 999 153 89 21 chr6 27330979 27331169 -161948385 + AluSg/x SINE Alu 98 300 -12 2393 73 10 7 chr6 27332399 27332699 -161946855 - AluSg SINE Alu -9 301 1 1500 186 0 44 chr6 27332702 27333018 -161946536 - AluJo SINE Alu 0 303 1 691 171 0 24 chr6 27333496 27333619 -161945935 - FLAM_A SINE Alu -11 131 12 23 0 0 0 chr6 27334389 27334412 -161945142 + AT_rich Low_complexity Low_complexity 1 23 0 336 111 0 0 chr6 27334418 27334472 -161945082 + (TA)n Simple_repeat Simple_repeat 2 55 0 1754 187 3 3 chr6 27334472 27334772 -161944782 - AluJb SINE Alu -12 300 1 2094 95 7 39 chr6 27334846 27335152 -161944402 - AluSx SINE Alu -16 296 1 602 157 0 111 chr6 27335730 27335883 -161943671 - MER3 DNA MER1_type -5 204 69 235 266 13 76 chr6 27335908 27335987 -161943567 - MIR SINE MIR -79 129 56 512 304 88 72 chr6 27336329 27337172 -161942382 + L2 LINE L2 2454 3313 0 449 329 144 35 chr6 27337421 27337908 -161941646 - L2 LINE L2 -562 2752 2213 21 0 0 0 chr6 27339997 27340018 -161939536 + AT_rich Low_complexity Low_complexity 1 21 0 542 117 0 0 chr6 27340074 27340151 -161939403 - U13 snRNA snRNA -27 77 1 2099 92 0 86 chr6 27340581 27340906 -161938648 + AluSc SINE Alu 1 297 -12 699 212 0 0 chr6 27341231 27341344 -161938210 + FLAM_A SINE Alu 2 114 -19 238 241 0 0 chr6 27343240 27343294 -161936260 - MER5A DNA MER1_type 0 189 136 444 123 0 0 chr6 27343969 27344042 -161935512 + (TG)n Simple_repeat Simple_repeat 2 74 0 801 313 153 10 chr6 27344137 27344537 -161935017 - L3 LINE CR1 -2 1575 1119 23 0 0 0 chr6 27344754 27344777 -161934777 + AT_rich Low_complexity Low_complexity 1 23 0 213 321 48 12 chr6 27344884 27344968 -161934586 - L2 LINE L2 -1 3271 3185 244 339 62 23 chr6 27345044 27345174 -161934380 + MIR SINE MIR 52 186 -76 2395 97 3 0 chr6 27345216 27345516 -161934038 + AluSp SINE Alu 1 301 -12 1429 132 117 60 chr6 27345537 27345818 -161933736 + AluJo SINE Alu 5 301 -11 543 245 7 60 chr6 27346229 27346380 -161933174 - MIR SINE MIR -64 198 56 187 167 0 0 chr6 27348217 27348247 -161931307 - L3 LINE CR1 -7 1570 1541 2557 77 0 0 chr6 27348292 27348603 -161930951 - AluSq SINE Alu -2 311 1 436 250 76 28 chr6 27348739 27348883 -161930671 - MIR3 SINE MIR -37 171 21 275 220 119 68 chr6 27351928 27352046 -161927508 + MIR SINE MIR 50 173 -89 594 302 80 9 chr6 27352906 27353118 -161926436 - MIR SINE MIR -4 258 32 22 0 0 0 chr6 27354030 27354052 -161925502 + AT_rich Low_complexity Low_complexity 1 22 0 262 293 35 9 chr6 27354328 27354444 -161925110 + (TA)n Simple_repeat Simple_repeat 1 119 0 245 267 70 35 chr6 27354533 27354619 -161924935 + MIR3 SINE MIR 85 173 -35 231 313 18 60 chr6 27355107 27355273 -161924281 + MIR SINE MIR 59 217 -45 662 192 181 6 chr6 27355670 27355847 -161923707 - MER3 DNA MER1_type 0 209 2 23 0 0 0 chr6 27356137 27356160 -161923394 + AT_rich Low_complexity Low_complexity 1 23 0 979 279 128 53 chr6 27356284 27357039 -161922515 + L2 LINE L2 2476 3309 -4 2278 107 3 0 chr6 27357530 27357828 -161921726 + AluSx SINE Alu 1 299 -13 526 294 29 7 chr6 27359031 27359167 -161920387 - L2 LINE L2 0 3272 3134 223 258 45 0 chr6 27359312 27359378 -161920176 - L2 LINE L2 -342 2930 2862 874 297 222 31 chr6 27359408 27360595 -161918959 - L2 LINE L2 -555 2759 1347 321 372 58 23 chr6 27360605 27360777 -161918777 - L2 LINE L2 -2129 1185 1008 527 244 160 6 chr6 27360865 27361021 -161918533 - MER5A DNA MER1_type -1 188 9 1834 156 30 7 chr6 27361021 27361323 -161918231 + AluJb SINE Alu 1 309 -3 182 278 44 56 chr6 27361329 27361419 -161918135 - L2 LINE L2 -2441 873 785 524 177 40 24 chr6 27361482 27361606 -161917948 - MIR SINE MIR -23 239 114 1036 183 75 11 chr6 27362114 27362321 -161917233 + AluJo SINE Alu 86 304 0 450 79 0 0 chr6 27362337 27362400 -161917154 + (TG)n Simple_repeat Simple_repeat 2 64 0 327 49 0 0 chr6 27363455 27363496 -161916058 + (TG)n Simple_repeat Simple_repeat 1 41 0 12517 162 31 43 chr6 27364507 27364843 -161914711 - Tigger1 DNA MER2_type 0 2418 2080 2325 91 3 0 chr6 27364843 27365139 -161914415 - AluSp SINE Alu -14 299 3 12517 162 31 43 chr6 27365139 27365414 -161914140 - Tigger1 DNA MER2_type -338 2080 1803 5995 52 1 3 chr6 27365414 27366163 -161913391 - L1PA6 LINE L1 -3 6151 5404 12517 162 31 43 chr6 27366163 27366571 -161912983 - Tigger1 DNA MER2_type -615 1803 1392 1964 88 44 15 chr6 27366571 27366844 -161912710 - AluY SINE Alu -10 301 21 12517 162 31 43 chr6 27366844 27368267 -161911287 - Tigger1 DNA MER2_type -1026 1392 3 318 320 56 118 chr6 27369250 27369860 -161909694 + L2 LINE L2 2716 3272 0 1539 146 100 0 chr6 27369949 27370209 -161909345 - AluJb SINE Alu -6 306 21 187 254 17 17 chr6 27370225 27370284 -161909270 - MIR SINE MIR -44 218 160 362 184 0 23 chr6 27371757 27371844 -161907710 + CT-rich Low_complexity Low_complexity 1 85 0 4537 198 71 47 chr6 27373384 27374769 -161904785 - Charlie1a DNA MER1_type -17 1438 21 770 244 98 10 chr6 27375189 27375394 -161904160 - MER58A DNA MER1_type -1 223 1 200 241 19 19 chr6 27376337 27376391 -161903163 + L2 LINE L2 3150 3203 -69 21 0 0 0 chr6 27378028 27378049 -161901505 + AT_rich Low_complexity Low_complexity 1 21 0 433 238 29 12 chr6 27378251 27378423 -161901131 + Charlie7 DNA MER1_type 2437 2611 -1 1355 78 16 11 chr6 27379364 27379555 -161899999 + AluSg/x SINE Alu 114 305 -7 817 233 75 17 chr6 27379728 27379968 -161899586 + MIR SINE MIR 6 259 -3 567 43 0 0 chr6 27380257 27380327 -161899227 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1117 162 16 117 chr6 27380351 27380598 -161898956 - AluJb SINE Alu -90 222 1 315 280 57 29 chr6 27381698 27381873 -161897681 - L1ME3A LINE L1 -310 5860 5681 288 197 30 0 chr6 27382390 27382456 -161897098 - MLT1G1 LTR MaLR 0 595 528 1419 224 35 17 chr6 27382619 27383294 -161896260 - L1ME LINE L1 -414 5752 5073 189 237 102 17 chr6 27383927 27383986 -161895568 + L2 LINE L2 3248 3311 -2 2696 30 0 0 chr6 27384866 27385170 -161894384 - AluY SINE Alu -7 304 1 388 290 84 19 chr6 27385384 27385539 -161894015 + MIR SINE MIR 63 227 -35 189 0 0 0 chr6 27386120 27386141 -161893413 + (A)n Simple_repeat Simple_repeat 1 21 0 1772 152 35 17 chr6 27386291 27386581 -161892973 + AluJb SINE Alu 1 295 -17 361 317 35 35 chr6 27387899 27388044 -161891510 + MIR3 SINE MIR 10 154 -54 223 321 49 0 chr6 27388050 27388131 -161891423 + L2 LINE L2 3229 3313 0 279 114 0 0 chr6 27390581 27390625 -161888929 + (TG)n Simple_repeat Simple_repeat 1 44 0 1588 174 0 25 chr6 27390625 27390901 -161888653 - AluJb SINE Alu -31 281 13 317 254 178 8 chr6 27391313 27391431 -161888123 + MIR SINE MIR 105 242 -20 231 356 54 27 chr6 27391403 27391552 -161888002 + L2 LINE L2 2926 3078 -194 * 1751 154 22 31 chr6 27391623 27391979 -161887575 - MLT1A1 LTR MaLR -12 353 1 382 293 53 23 chr6 27391987 27392120 -161887434 + L2 LINE L2 3136 3272 0 654 243 180 22 chr6 27392529 27392751 -161886803 + MIR SINE MIR 6 262 0 22 0 0 0 chr6 27393169 27393191 -161886363 + AT_rich Low_complexity Low_complexity 1 22 0 1508 201 142 102 chr6 27393812 27394334 -161885220 - MLT1E1 LTR MaLR -2 652 99 2274 143 55 31 chr6 27394334 27394754 -161884800 - Tigger2a DNA MER2_type -2 432 3 1508 201 142 102 chr6 27394754 27394857 -161884697 - MLT1E1 LTR MaLR -555 99 2 2381 66 0 26 chr6 27395160 27395464 -161884090 - AluY SINE Alu -15 296 1 1912 188 53 34 chr6 27395992 27396173 -161883381 + L1MB7 LINE L1 5411 5587 -597 2309 78 14 0 chr6 27396173 27396466 -161883088 + AluY SINE Alu 1 297 -14 1912 188 53 34 chr6 27396466 27396778 -161882776 + L1MB7 LINE L1 5587 5913 -271 2312 105 0 3 chr6 27397857 27398163 -161881391 + AluSc SINE Alu 1 305 -4 413 194 160 74 chr6 27398599 27398774 -161880780 - MER112 DNA MER1_type -6 254 65 1343 163 0 14 chr6 27398902 27399123 -161880431 - AluJo SINE Alu -8 304 87 653 279 25 0 chr6 27399351 27399512 -161880042 + MIR SINE MIR 33 197 -65 2237 105 0 0 chr6 27399565 27399861 -161879693 + AluY SINE Alu 1 296 -15 402 204 133 92 chr6 27400153 27400349 -161879205 - L1ME3 LINE L1 -84 6078 5875 * 1355 253 88 54 chr6 27400348 27401671 -161877883 - L1MEc LINE L1 -2629 3586 2219 53 0 0 0 chr6 27401671 27401724 -161877830 + AT_rich Low_complexity Low_complexity 1 53 0 412 216 125 68 chr6 27401724 27401775 -161877779 - L1MEc LINE L1 -4130 2266 2219 2011 78 37 0 chr6 27401775 27402044 -161877510 - AluY SINE Alu -2 309 31 412 216 125 68 chr6 27402044 27402168 -161877386 - L1MEc LINE L1 -4177 2219 2081 372 267 26 0 chr6 27402201 27402317 -161877237 - MER103 DNA DNA -45 121 3 28 61 0 0 chr6 27403479 27403528 -161876026 + AT_rich Low_complexity Low_complexity 1 49 0 182 299 178 9 chr6 27404186 27404293 -161875261 + L2 LINE L2 3139 3263 -9 497 303 147 9 chr6 27404332 27404550 -161875004 + MIR SINE MIR 1 248 -14 219 217 0 0 chr6 27404555 27404615 -161874939 + (CACCAT)n Simple_repeat Simple_repeat 2 61 0 189 0 0 0 chr6 27404736 27404757 -161874797 + (A)n Simple_repeat Simple_repeat 1 21 0 1861 147 34 0 chr6 27404820 27405113 -161874441 - AluJb SINE Alu -9 303 1 903 147 7 13 chr6 27405966 27406116 -161873438 + FRAM SINE Alu 22 170 -6 23 54 0 0 chr6 27406118 27406155 -161873399 + AT_rich Low_complexity Low_complexity 1 37 0 2110 90 0 63 chr6 27406467 27406790 -161872764 - AluSx SINE Alu 0 304 1 24 0 0 0 chr6 27406837 27406861 -161872693 + AT_rich Low_complexity Low_complexity 1 24 0 212 196 0 22 chr6 27407880 27407926 -161871628 + L2 LINE L2 3265 3309 -4 2115 110 0 0 chr6 27409940 27410251 -161869303 + AluSg SINE Alu 1 311 0 21 0 0 0 chr6 27410489 27410510 -161869044 + AT_rich Low_complexity Low_complexity 1 21 0 1735 180 0 0 chr6 27411471 27411820 -161867734 + AluJb SINE Alu 1 349 0 22 0 0 0 chr6 27412866 27412888 -161866666 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 27413716 27413757 -161865797 + AT_rich Low_complexity Low_complexity 1 41 0 913 248 116 25 chr6 27414471 27414789 -161864765 - MLT1I LTR MaLR 0 409 63 198 0 0 0 chr6 27415139 27415161 -161864393 + (TTA)n Simple_repeat Simple_repeat 2 23 0 362 20 0 0 chr6 27415180 27415229 -161864325 - L1PA3 LINE L1 0 6155 6107 356 266 75 0 chr6 27415326 27415420 -161864134 - MIR SINE MIR -3 259 159 24 0 0 0 chr6 27416406 27416430 -161863124 + AT_rich Low_complexity Low_complexity 1 24 0 357 24 0 0 chr6 27416594 27416636 -161862918 + (TG)n Simple_repeat Simple_repeat 2 43 0 2298 95 17 0 chr6 27417255 27417551 -161862003 + AluSx SINE Alu 1 301 -11 295 287 117 11 chr6 27417750 27417844 -161861710 - L2 LINE L2 0 3313 3210 494 264 29 14 chr6 27418311 27418451 -161861103 - MIR SINE MIR -36 226 85 501 286 21 16 chr6 27418451 27418640 -161860914 - LTR16A LTR ERVL 0 450 261 379 276 70 54 chr6 27419693 27419878 -161859676 - MIR3 SINE MIR -18 190 3 333 324 92 23 chr6 27420549 27420722 -161858832 - MIR3 SINE MIR -19 189 5 2194 88 27 10 chr6 27421826 27422122 -161857432 - AluY SINE Alu -10 301 1 389 354 25 6 chr6 27422431 27422592 -161856962 + MIR SINE MIR 73 236 -26 209 313 43 52 chr6 27422750 27422865 -161856689 + L2 LINE L2 3178 3291 -22 198 0 0 0 chr6 27423053 27423075 -161856479 + (A)n Simple_repeat Simple_repeat 1 22 0 180 135 0 0 chr6 27423300 27423337 -161856217 + (A)n Simple_repeat Simple_repeat 1 37 0 2212 83 24 0 chr6 27423342 27423630 -161855924 + AluSg1 SINE Alu 1 295 -14 274 233 14 0 chr6 27424059 27424132 -161855422 - MER116 DNA Mariner -6 74 1 222 320 117 16 chr6 27425853 27425981 -161853573 + MIR SINE MIR 13 153 -109 2054 153 0 7 chr6 27426515 27426816 -161852738 - AluSx SINE Alu -13 299 1 2069 118 17 0 chr6 27427332 27427638 -161851916 + AluSx SINE Alu 3 312 0 25 0 0 0 chr6 27427795 27427820 -161851734 + AT_rich Low_complexity Low_complexity 1 25 0 633 182 136 14 chr6 27428964 27429184 -161850370 - MER5C DNA MER1_type -12 312 66 758 171 0 0 chr6 27429485 27429602 -161849952 + FLAM_A SINE Alu 5 121 -12 281 167 0 0 chr6 27429899 27429947 -161849607 + L2 LINE L2 3261 3308 -5 25 0 0 0 chr6 27430109 27430134 -161849420 + AT_rich Low_complexity Low_complexity 1 25 0 1908 139 59 10 chr6 27430809 27431097 -161848457 - AluSx SINE Alu -10 302 1 400 237 79 9 chr6 27431192 27431306 -161848248 - MIR SINE MIR 0 262 141 2137 98 3 3 chr6 27431984 27432292 -161847262 + AluSx SINE Alu 1 308 0 560 192 29 0 chr6 27432419 27432523 -161847031 - U6 snRNA snRNA 0 107 1 643 167 0 25 chr6 27433313 27433433 -161846121 + FLAM_A SINE Alu 12 128 -14 343 319 159 22 chr6 27434859 27435041 -161844513 - MIR SINE MIR -33 229 23 210 255 20 0 chr6 27435183 27435234 -161844320 + MIR SINE MIR 31 82 -126 407 346 0 15 chr6 27435400 27435533 -161844021 - MIR SINE MIR -112 150 20 188 296 144 16 chr6 27435714 27435839 -161843715 - MIR SINE MIR -120 142 2 247 299 125 14 chr6 27437237 27437381 -161842173 - MIR3 SINE MIR -1 207 48 717 242 34 83 chr6 27437457 27437599 -161841955 - MIR SINE MIR 0 262 137 1611 184 21 7 chr6 27437599 27437882 -161841672 + AluJo SINE Alu 6 292 -20 717 242 34 83 chr6 27437882 27438003 -161841551 - MIR SINE MIR -125 137 12 221 309 0 18 chr6 27439522 27439577 -161839977 - MIR SINE MIR -186 76 23 284 297 14 0 chr6 27439599 27439673 -161839881 + MER81 DNA DNA 40 114 0 1084 151 0 0 chr6 27440462 27440621 -161838933 - FRAM SINE Alu -7 159 1 210 233 0 0 chr6 27440739 27440782 -161838772 + C-rich Low_complexity Low_complexity 6 48 0 203 237 10 41 chr6 27441343 27441440 -161838114 + (CAGAGA)n Simple_repeat Simple_repeat 4 97 0 984 218 43 0 chr6 27441608 27441819 -161837735 + MIR SINE MIR 2 221 -41 345 279 135 0 chr6 27441969 27442073 -161837481 + MIR3 SINE MIR 4 121 -87 409 296 82 0 chr6 27443072 27443231 -161836323 + MIR SINE MIR 77 248 -14 243 306 0 16 chr6 27443391 27443453 -161836101 - MIR SINE MIR -179 83 23 297 197 16 0 chr6 27443629 27443690 -161835864 + MER45 DNA AcHobo 62 123 -55 189 254 18 18 chr6 27444407 27444462 -161835092 + MIR SINE MIR 81 135 -73 654 238 12 41 chr6 27446233 27446405 -161833149 - MIR SINE MIR -73 189 23 6945 20 6 1 chr6 27446513 27447323 -161832231 + L1PA3 LINE L1 5339 6152 -3 310 295 22 14 chr6 27448516 27448655 -161830899 - L1ME3A LINE L1 -9 6161 6022 313 325 84 18 chr6 27449485 27449651 -161829903 + L2 LINE L2 2910 3086 -186 479 117 13 0 chr6 27452187 27452264 -161827290 + MADE1 DNA Mariner 1 78 -2 238 167 167 0 chr6 27453004 27453070 -161826484 - L1ME1 LINE L1 -5 6161 6085 4222 216 47 49 chr6 27453083 27453230 -161826324 - L1ME1 LINE L1 -166 6000 5854 1208 84 6 0 chr6 27453230 27453396 -161826158 - L1PA10 LINE L1 -3 6165 5999 4222 216 47 49 chr6 27453396 27455089 -161824465 - L1ME1 LINE L1 -312 5854 4159 1500 221 63 16 chr6 27455089 27455533 -161824021 + LTR40c LTR ERVL 1 465 0 4222 216 47 49 chr6 27455533 27455914 -161823640 - L1ME1 LINE L1 -2007 4159 3779 2133 110 0 0 chr6 27455914 27456186 -161823368 - AluSc SINE Alu -25 284 13 4222 216 47 49 chr6 27456186 27456486 -161823068 - L1ME1 LINE L1 -2387 3779 3480 1736 184 0 3 chr6 27456486 27456785 -161822769 - AluJb SINE Alu -14 298 1 4222 216 47 49 chr6 27456785 27457070 -161822484 - L1ME1 LINE L1 -2686 3480 3214 995 26 0 0 chr6 27457070 27457187 -161822367 - L1PA3 LINE L1 -1 6154 6038 4222 216 47 49 chr6 27457187 27457302 -161822252 - L1ME1 LINE L1 -2952 3214 3100 279 54 0 0 chr6 27457318 27457355 -161822199 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr6 27458159 27458187 -161821367 + AT_rich Low_complexity Low_complexity 1 28 0 332 236 14 0 chr6 27462349 27462421 -161817133 - Charlie8 DNA MER1_type 0 2417 2345 2296 101 0 13 chr6 27462597 27462905 -161816649 + AluSx SINE Alu 1 304 -8 1985 146 0 26 chr6 27462976 27463285 -161816269 + AluJb SINE Alu 1 301 -11 828 301 49 0 chr6 27463331 27463577 -161815977 + MIR SINE MIR 5 262 0 358 322 34 14 chr6 27465837 27466001 -161813553 + MIR SINE MIR 32 192 -61 602 267 48 6 chr6 27466578 27466743 -161812811 + MIR3 SINE MIR 31 202 -6 26 0 0 0 chr6 27468762 27468788 -161810766 + AT_rich Low_complexity Low_complexity 1 26 0 3259 148 89 8 chr6 27469416 27469821 -161809733 - LTR51 LTR ERV1 0 671 197 2465 63 0 3 chr6 27469821 27470121 -161809433 + AluY SINE Alu 5 303 -8 3259 148 89 8 chr6 27470121 27470336 -161809218 - LTR51 LTR ERV1 -474 197 1 372 192 327 0 chr6 27470741 27470845 -161808709 + MER5A DNA MER1_type 51 188 -1 310 352 56 56 chr6 27470860 27471127 -161808427 + L2 LINE L2 2970 3236 -36 1679 169 45 4 chr6 27471160 27471427 -161808127 - AluJb SINE Alu -32 280 3 418 285 117 0 chr6 27471669 27471806 -161807748 - MIR SINE MIR -25 237 85 4661 218 75 22 chr6 27471964 27474304 -161805250 + L1MCb LINE L1 10 2595 -4150 2131 77 39 0 chr6 27474358 27474481 -161805073 + AluY SINE Alu 1 118 -193 414 0 0 0 chr6 27474481 27474527 -161805027 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2131 77 39 0 chr6 27474527 27474688 -161804866 + AluY SINE Alu 118 296 -15 250 146 34 34 chr6 27474792 27474881 -161804673 + CT-rich Low_complexity Low_complexity 3 91 0 1959 170 3 0 chr6 27474882 27475182 -161804372 - AluJo SINE Alu -11 301 1 22 0 0 0 chr6 27477759 27477781 -161801773 + AT_rich Low_complexity Low_complexity 1 22 0 226 297 114 29 chr6 27477812 27477987 -161801567 + HAL1 LINE L1 840 1029 -1478 1107 16 0 0 chr6 27477987 27478115 -161801439 + AluYb8 SINE Alu 191 318 0 304 286 79 79 chr6 27478115 27478559 -161800995 + HAL1 LINE L1 1017 1460 -1047 1413 148 30 25 chr6 27478567 27478804 -161800750 + AluSg1 SINE Alu 1 238 -71 341 317 38 11 chr6 27479281 27479464 -161800090 + HAL1b LINE L1 746 933 -415 304 241 124 22 chr6 27479728 27479865 -161799689 + HAL1b LINE L1 1190 1340 -8 2036 124 0 0 chr6 27480128 27480401 -161799153 - AluSx SINE Alu -39 273 1 973 90 8 0 chr6 27480417 27480551 -161799003 - AluSp/q SINE Alu 0 313 179 949 197 64 0 chr6 27481121 27481309 -161798245 - MER58A DNA MER1_type -1 223 24 260 122 41 0 chr6 27481343 27481392 -161798162 + GA-rich Low_complexity Low_complexity 3 53 0 695 272 29 24 chr6 27481626 27481832 -161797722 + MIR SINE MIR 8 214 -48 410 111 133 22 chr6 27482536 27482626 -161796928 - MLT2E LTR ERVL -19 609 510 21 36 0 0 chr6 27482845 27482873 -161796681 + AT_rich Low_complexity Low_complexity 1 28 0 369 277 25 25 chr6 27482927 27483046 -161796508 - L2 LINE L2 0 3313 3195 809 299 75 57 chr6 27483324 27483802 -161795752 + L3 LINE CR1 880 1366 -211 271 265 73 0 chr6 27485776 27485844 -161793710 + L2 LINE L2 3200 3272 0 247 304 0 14 chr6 27486691 27486760 -161792794 + MIR3 SINE MIR 9 76 -132 417 216 11 23 chr6 27486820 27486908 -161792646 + MER21B LTR ERV1 1 87 -776 2492 241 35 71 chr6 27486929 27487756 -161791798 + MER21B LTR ERV1 16 812 -51 1455 69 0 0 chr6 27487808 27487983 -161791571 + AluSp SINE Alu 136 310 -3 398 277 158 23 chr6 27489465 27489775 -161789779 - L1ME4a LINE L1 -1 6120 5769 2087 119 0 16 chr6 27489986 27490289 -161789265 - AluSx SINE Alu -14 298 1 229 231 108 39 chr6 27490289 27490419 -161789135 - L1P5 LINE L1 -711 5440 5302 22 0 0 0 chr6 27490677 27490699 -161788855 + AT_rich Low_complexity Low_complexity 1 22 0 235 265 188 30 chr6 27491394 27491566 -161787988 + MIR3 SINE MIR 5 203 -5 448 293 53 60 chr6 27492400 27492937 -161786617 + L1MEd LINE L1 1044 1579 -4550 360 0 0 0 chr6 27492937 27492977 -161786577 + (CA)n Simple_repeat Simple_repeat 2 41 0 448 293 53 60 chr6 27492977 27493085 -161786469 + L1MEd LINE L1 1579 1686 -4443 813 195 100 0 chr6 27493242 27493432 -161786122 - MER3 DNA MER1_type 0 209 1 914 292 87 20 chr6 27493651 27494298 -161785256 + L1MEd LINE L1 2350 3039 -3090 679 301 15 0 chr6 27494489 27494688 -161784866 + L1MEd LINE L1 4036 4237 -1892 510 146 0 27 chr6 27494748 27495022 -161784532 + AluJo SINE Alu 1 312 0 483 283 95 61 chr6 27495022 27495098 -161784456 + L1MEd LINE L1 4308 4380 -1749 2002 119 0 27 chr6 27495098 27495392 -161784162 + AluSx SINE Alu 1 286 -26 483 283 95 61 chr6 27495392 27495873 -161783681 + L1MEd LINE L1 4380 4884 -1245 354 296 103 13 chr6 27497119 27497276 -161782278 + MIR SINE MIR 21 191 -71 209 345 0 82 chr6 27497449 27497559 -161781995 - MIR SINE MIR -66 142 42 515 281 62 16 chr6 27498216 27498432 -161781122 - MIR SINE MIR -13 249 22 286 237 23 107 chr6 27498425 27498556 -161780998 + MIR SINE MIR 71 190 -72 * 207 0 0 0 chr6 27500372 27500395 -161779159 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 236 14 69 chr6 27501184 27501256 -161778298 - MER5A DNA MER1_type -78 111 44 355 259 71 0 chr6 27503507 27503619 -161775935 + MER5C DNA MER1_type 205 324 0 333 0 0 0 chr6 27503713 27503750 -161775804 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1860 145 14 0 chr6 27503751 27504027 -161775527 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 27505235 27505256 -161774298 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 27505810 27505833 -161773721 + AT_rich Low_complexity Low_complexity 1 23 0 621 288 135 5 chr6 27508806 27509028 -161770526 - MIR SINE MIR -10 252 2 30 27 0 0 chr6 27510342 27510379 -161769175 + AT_rich Low_complexity Low_complexity 1 37 0 2337 87 0 3 chr6 27510577 27510877 -161768677 - AluSg SINE Alu -11 299 1 234 284 45 57 chr6 27511964 27512052 -161767502 - L2 LINE L2 0 3313 3227 365 259 4 109 chr6 27512226 27512492 -161767062 - MER112 DNA MER1_type -13 247 10 182 247 35 118 chr6 27513220 27513305 -161766249 - L2 LINE L2 -165 3107 3030 206 204 20 20 chr6 27513312 27513361 -161766193 + L2 LINE L2 3218 3266 -6 186 283 67 42 chr6 27513605 27513725 -161765829 - L2 LINE L2 -897 2417 2295 2257 102 14 0 chr6 27513895 27514189 -161765365 + AluSc SINE Alu 1 298 -11 607 327 203 10 chr6 27514189 27515052 -161764502 + L2 LINE L2 2260 3301 -12 254 285 70 57 chr6 27515337 27515495 -161764059 - MIR SINE MIR -82 180 21 21 36 0 0 chr6 27516361 27516389 -161763165 + AT_rich Low_complexity Low_complexity 1 28 0 2369 39 32 0 chr6 27518311 27518593 -161760961 - AluY SINE Alu -19 292 2 1264 251 85 86 chr6 27519489 27520677 -161758877 + L1MC4 LINE L1 6854 8040 -2 1948 155 0 29 chr6 27520742 27521058 -161758496 + AluJb SINE Alu 1 307 -5 394 227 11 11 chr6 27521326 27521414 -161758140 - L2 LINE L2 -1 3271 3184 189 0 0 0 chr6 27521921 27521942 -161757612 + (A)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr6 27522140 27522164 -161757390 + AT_rich Low_complexity Low_complexity 1 24 0 286 302 43 35 chr6 27522704 27522820 -161756734 + L2 LINE L2 3189 3305 -8 292 257 140 14 chr6 27522983 27523197 -161756357 - L1ME3A LINE L1 -212 5952 5712 403 255 217 25 chr6 27523319 27523476 -161756078 - MIR SINE MIR -28 234 48 22 56 0 0 chr6 27524417 27524453 -161755101 + AT_rich Low_complexity Low_complexity 1 36 0 52 69 0 0 chr6 27527398 27527499 -161752055 + AT_rich Low_complexity Low_complexity 1 101 0 358 329 77 43 chr6 27530336 27530686 -161748868 + L2 LINE L2 1722 2083 -1231 321 278 146 38 chr6 27531288 27531500 -161748054 + MER34 LTR ERV1 13 247 -295 295 172 69 0 chr6 27531472 27531530 -161748024 + MER39 LTR ERV1 409 470 -237 * 255 352 28 0 chr6 27531758 27531866 -161747688 + L2 LINE L2 3199 3309 -4 1794 156 0 41 chr6 27532346 27532666 -161746888 - AluJo SINE Alu 0 312 6 1369 218 57 35 chr6 27532770 27533227 -161746327 - MER39 LTR ERV1 -25 682 6 10145 62 8 68 chr6 27533874 27535349 -161744205 - SVA Other Other 0 1386 1 258 105 0 0 chr6 27535362 27535400 -161744154 + (AGGGGG)n Simple_repeat Simple_repeat 3 40 0 1308 212 76 9 chr6 27536245 27536561 -161742993 - MER2 DNA MER2_type 0 345 9 562 269 138 19 chr6 27536638 27536906 -161742648 - MLT1J2 LTR MaLR -70 380 81 562 351 196 11 chr6 27537377 27537819 -161741735 - L3 LINE CR1 -1 1576 1011 1861 174 3 0 chr6 27537819 27538118 -161741436 - AluJb SINE Alu -12 300 1 562 351 196 11 chr6 27538118 27538227 -161741327 - L3 LINE CR1 -566 1011 923 249 319 22 0 chr6 27538302 27538393 -161741161 - MLT1J LTR MaLR -308 203 111 358 280 37 32 chr6 27538685 27538874 -161740680 - L1M4 LINE L1 -2368 3778 3589 454 256 132 66 chr6 27538958 27539321 -161740233 - L1M4 LINE L1 -2635 3511 3125 565 349 28 5 chr6 27539382 27539597 -161739957 - L3 LINE CR1 -1001 576 357 350 273 30 0 chr6 27540093 27540192 -161739362 + MIR3 SINE MIR 86 187 -21 197 33 33 0 chr6 27540366 27540396 -161739158 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 576 210 70 61 chr6 27541852 27542081 -161737473 - MLT1L LTR MaLR -47 568 338 1079 189 0 6 chr6 27542981 27543161 -161736393 + MER5A DNA MER1_type 11 189 0 247 401 54 14 chr6 27544143 27544290 -161735264 + L2 LINE L2 3119 3271 -1 24 0 0 0 chr6 27544502 27544526 -161735028 + AT_rich Low_complexity Low_complexity 1 24 0 352 227 132 56 chr6 27544725 27544946 -161734608 - HAL1 LINE L1 -10 2497 2294 1014 152 123 5 chr6 27544946 27545157 -161734397 - MER46A DNA MER2_type 0 236 1 352 227 132 56 chr6 27545157 27545173 -161734381 - HAL1 LINE L1 -213 2294 2281 291 28 0 0 chr6 27545173 27545209 -161734345 + (CA)n Simple_repeat Simple_repeat 2 37 0 352 227 132 56 chr6 27545209 27545274 -161734280 - HAL1 LINE L1 -226 2281 2171 1222 190 152 51 chr6 27545276 27545671 -161733883 - MSTB2 LTR MaLR 0 457 23 2581 221 100 32 chr6 27545679 27546553 -161733001 - HAL1 LINE L1 -337 2170 1214 1810 183 0 16 chr6 27546553 27546870 -161732684 - AluJb SINE Alu 0 312 1 2581 221 100 32 chr6 27546870 27547021 -161732533 - HAL1 LINE L1 -1293 1214 1075 1198 265 145 28 chr6 27547078 27547803 -161731751 - HAL1 LINE L1 -1688 819 10 881 268 68 40 chr6 27547938 27548338 -161731216 - LTR38 LTR ERV1 -9 547 137 1010 201 136 13 chr6 27549107 27549416 -161730138 - L1MA4 LINE L1 -8 6292 5946 321 221 116 0 chr6 27551433 27551519 -161728035 - MER96 DNA MER1_type? -19 156 61 24 0 0 0 chr6 27552397 27552421 -161727133 + AT_rich Low_complexity Low_complexity 1 24 0 1714 160 0 41 chr6 27552421 27552714 -161726840 - AluJo SINE Alu -31 281 1 636 192 48 24 chr6 27555076 27555243 -161724311 + MER58A DNA MER1_type 45 215 -9 808 198 11 28 chr6 27555332 27555509 -161724045 + FRAM SINE Alu 1 174 -2 367 207 278 30 chr6 27555717 27555886 -161723668 - MIR SINE MIR -18 244 34 1639 159 97 3 chr6 27556512 27556821 -161722733 + MER44D DNA MER2_type 1 608 -1 1270 137 75 62 chr6 27557228 27557455 -161722099 + MER30 DNA MER1_type 1 230 0 2391 81 0 0 chr6 27557515 27557810 -161721744 + AluY SINE Alu 1 295 -16 207 100 0 0 chr6 27557937 27557967 -161721587 + (CATG)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr6 27560975 27561007 -161718547 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 27564590 27564614 -161714940 + AT_rich Low_complexity Low_complexity 1 24 0 1647 163 7 28 chr6 27564616 27564904 -161714650 + AluJo SINE Alu 1 282 -30 252 86 0 0 chr6 27564924 27564959 -161714595 + (CATA)n Simple_repeat Simple_repeat 1 35 0 353 194 0 0 chr6 27566188 27566257 -161713297 + Alu SINE Alu 243 298 -4 252 0 0 0 chr6 27568064 27568092 -161711462 + (T)n Simple_repeat Simple_repeat 1 28 0 927 253 82 31 chr6 27570124 27570515 -161709039 + LTR16B LTR ERVL 54 464 0 1727 128 16 8 chr6 27570552 27570810 -161708744 + AluSx SINE Alu 34 293 -19 1602 243 38 16 chr6 27574267 27574720 -161704834 + Charlie4a DNA MER1_type 42 504 -4 2512 214 24 20 chr6 27575123 27575660 -161703894 - MER74A LTR ERVL 0 558 20 1693 143 11 8 chr6 27575667 27575932 -161703622 + AluSx SINE Alu 34 299 -13 321 297 108 40 chr6 27577288 27577436 -161702118 - L2 LINE L2 -16 3297 3140 1590 252 59 12 chr6 27577540 27577965 -161701589 + LTR16A LTR ERVL 1 445 -5 230 225 0 0 chr6 27578397 27578437 -161701117 - L2 LINE L2 -10 3262 3223 670 268 153 5 chr6 27578875 27579084 -161700470 - MIR SINE MIR -19 243 4 397 275 134 7 chr6 27580302 27580451 -161699103 + MIR SINE MIR 95 262 0 955 216 88 35 chr6 27580488 27580754 -161698800 + MER20B DNA MER1_type 369 652 -131 2725 154 21 39 chr6 27580754 27580917 -161698637 - L1MB8 LINE L1 0 6178 6014 2310 97 3 0 chr6 27580917 27581217 -161698337 + AluSq SINE Alu 1 301 -12 2725 154 21 39 chr6 27581217 27581572 -161697982 - L1MB8 LINE L1 -164 6014 5669 955 216 88 35 chr6 27581572 27581588 -161697966 + MER20B DNA MER1_type 652 666 -117 2083 149 7 0 chr6 27581601 27581902 -161697652 + AluJb SINE Alu 1 303 -9 2288 116 0 0 chr6 27581945 27582255 -161697299 + AluSg SINE Alu 1 310 0 498 194 11 0 chr6 27582265 27582358 -161697196 + MER20B DNA MER1_type 689 782 -1 436 349 92 5 chr6 27582369 27582587 -161696967 + MIR SINE MIR 20 256 -6 24 0 0 0 chr6 27583419 27583443 -161696111 + AT_rich Low_complexity Low_complexity 1 24 0 351 250 0 12 chr6 27583794 27583878 -161695676 + MER58B DNA MER1_type 257 339 -2 21 71 0 0 chr6 27585516 27585558 -161693996 + AT_rich Low_complexity Low_complexity 1 42 0 486 243 17 14 chr6 27585669 27585801 -161693753 + MLT1G1 LTR MaLR 68 237 -312 2157 139 81 60 chr6 27585828 27586295 -161693259 - MER31A LTR ERV1 -8 477 1 681 244 226 11 chr6 27586295 27586576 -161692978 + MLT1G1 LTR MaLR 251 593 -2 2213 94 3 26 chr6 27587402 27587744 -161691810 - AluSx SINE Alu 0 312 1 821 251 39 21 chr6 27587773 27588052 -161691502 - L1ME1 LINE L1 -5 6161 5878 266 287 116 61 chr6 27588693 27588857 -161690697 + L3 LINE CR1 782 954 -623 351 288 181 33 chr6 27589194 27589465 -161690089 + L3 LINE CR1 1204 1514 -63 1777 204 38 46 chr6 27589661 27590054 -161689500 - MLT1B LTR MaLR 0 390 1 180 196 109 0 chr6 27591556 27591602 -161687952 + MIR SINE MIR 82 132 -76 257 277 43 76 chr6 27591614 27591798 -161687756 + MER5B DNA MER1_type 1 178 0 517 151 29 7 chr6 27592313 27592452 -161687102 + GA-rich Low_complexity Low_complexity 3 144 0 3484 96 16 2 chr6 27592622 27592664 -161686890 - MLT2A2 LTR ERVL 0 453 413 369 0 0 0 chr6 27592664 27592705 -161686849 + (CA)n Simple_repeat Simple_repeat 2 42 0 3484 96 16 2 chr6 27592705 27593109 -161686445 - MLT2A2 LTR ERVL -40 413 1 1359 285 92 55 chr6 27593393 27595067 -161684487 + L1ME4a LINE L1 410 2195 -4115 1239 259 82 26 chr6 27595095 27595818 -161683736 + L1ME4a LINE L1 2253 3015 -3114 646 282 156 8 chr6 27596516 27596874 -161682680 + L1ME4a LINE L1 5477 5887 -217 244 235 15 81 chr6 27596884 27597020 -161682534 + L1ME4a LINE L1 5940 6066 -38 254 319 57 19 chr6 27597706 27597813 -161681741 + MER5B DNA MER1_type 1 131 -58 473 279 97 32 chr6 27598330 27598671 -161680883 - L1ME4a LINE L1 -24 6097 5735 564 295 75 10 chr6 27598999 27599199 -161680355 - MIR SINE MIR -2 260 48 926 158 17 0 chr6 27599212 27599389 -161680165 - L1MC3 LINE L1 -146 7639 7460 526 288 45 30 chr6 27599443 27599641 -161679913 - MIR SINE MIR -52 210 10 292 269 228 12 chr6 27599837 27600008 -161679546 - L3 LINE CR1 -160 1417 1210 22 56 0 0 chr6 27601301 27601337 -161678217 + AT_rich Low_complexity Low_complexity 1 36 0 247 232 34 57 chr6 27602756 27602933 -161676621 + (TCTCTG)n Simple_repeat Simple_repeat 6 178 0 * 294 275 9 59 chr6 27602857 27603108 -161676446 + CT-rich Low_complexity Low_complexity 1 238 0 194 353 90 8 chr6 27603968 27604090 -161675464 - MER5A DNA MER1_type -9 180 49 238 236 85 57 chr6 27605628 27605734 -161673820 + MIR SINE MIR 36 144 -64 289 174 29 0 chr6 27605984 27606053 -161673501 + (TA)n Simple_repeat Simple_repeat 2 72 0 2326 101 0 0 chr6 27606334 27606665 -161672889 - AluY SINE Alu 0 335 5 204 139 70 23 chr6 27607791 27607834 -161671720 + MIR SINE MIR 106 150 -58 484 248 17 0 chr6 27608075 27608192 -161671362 - MER70A LTR ERVL -239 233 115 210 354 0 10 chr6 27608438 27608537 -161671017 + MIR SINE MIR 159 256 -6 320 320 52 0 chr6 27608679 27608776 -161670778 + L2 LINE L2 3144 3245 -27 1045 194 107 0 chr6 27608779 27608995 -161670559 - MER70A LTR ERVL -233 239 1 305 181 60 72 chr6 27611201 27611284 -161668270 + L2 LINE L2 3232 3313 0 270 200 18 0 chr6 27611717 27611772 -161667782 + MIR SINE MIR 82 137 -125 587 289 20 40 chr6 27611788 27611989 -161667565 - MIR SINE MIR -12 250 54 335 336 30 0 chr6 27612029 27612160 -161667394 + MIR SINE MIR 128 262 0 605 319 61 13 chr6 27612662 27612891 -161666663 + MIR SINE MIR 2 241 -21 279 212 94 12 chr6 27612911 27612996 -161666558 + MIR SINE MIR 171 262 0 291 256 23 53 chr6 27613612 27613745 -161665809 - MER102a DNA MER1_type -26 304 176 316 229 70 96 chr6 27614257 27614347 -161665207 + L1ME4a LINE L1 5532 5623 -498 243 0 0 0 chr6 27614347 27614374 -161665180 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 316 229 70 96 chr6 27614374 27614388 -161665166 + L1ME4a LINE L1 5623 5636 -485 1902 128 3 51 chr6 27614388 27614701 -161664853 + AluSq SINE Alu 1 298 -15 316 229 70 96 chr6 27614701 27614866 -161664688 + L1ME4a LINE L1 5636 5795 -326 322 203 38 13 chr6 27614866 27614945 -161664609 - L2 LINE L2 -2 3311 3231 461 199 195 21 chr6 27614952 27615193 -161664361 + L1ME4a LINE L1 5794 6076 -45 26 0 0 0 chr6 27615207 27615233 -161664321 + AT_rich Low_complexity Low_complexity 1 26 0 334 220 199 7 chr6 27615351 27615492 -161664062 + L1ME4a LINE L1 5954 6121 0 368 260 96 7 chr6 27615944 27616128 -161663426 - L1MEd LINE L1 -4591 1972 1622 21 0 0 0 chr6 27616228 27616249 -161663305 + AT_rich Low_complexity Low_complexity 1 21 0 414 295 72 58 chr6 27616882 27617160 -161662394 - L1MEd LINE L1 -5750 622 336 2581 37 0 0 chr6 27617160 27617457 -161662097 + AluY SINE Alu 1 297 -14 414 295 72 58 chr6 27617457 27617541 -161662013 - L1MEd LINE L1 -6036 336 255 180 267 188 10 chr6 27618420 27618521 -161661033 + L2 LINE L2 3195 3313 0 455 301 110 32 chr6 27618793 27619012 -161660542 + MIR SINE MIR 7 242 -20 193 318 40 63 chr6 27620377 27620503 -161659051 + L2 LINE L2 2966 3088 -184 967 252 198 49 chr6 27620547 27621253 -161658301 - L2 LINE L2 -1 3312 2486 231 336 112 0 chr6 27621270 27621377 -161658177 + L2 LINE L2 3122 3240 -32 2535 138 21 19 chr6 27622097 27622524 -161657030 - MSTA LTR MaLR 0 428 1 304 226 19 75 chr6 27623362 27623468 -161656086 + LTR4 LTR ERV1 18 117 -479 473 259 39 29 chr6 27623753 27623958 -161655596 + LTR4 LTR ERV1 390 596 0 1891 260 111 58 chr6 27624118 27625227 -161654327 + L2 LINE L2 2132 3312 -1 21 0 0 0 chr6 27625895 27625916 -161653638 + AT_rich Low_complexity Low_complexity 1 21 0 497 225 45 9 chr6 27626719 27626830 -161652724 - L2 LINE L2 -8 3305 3191 250 212 45 0 chr6 27626860 27626926 -161652628 + MIR SINE MIR 84 152 -110 195 268 80 36 chr6 27628325 27628437 -161651117 + MIR SINE MIR 90 206 -56 594 237 90 12 chr6 27629782 27630105 -161649449 + MLT1I LTR MaLR 1 392 -17 1658 249 79 17 chr6 27631838 27632433 -161647121 - MER20B DNA MER1_type -86 697 66 480 188 0 62 chr6 27632643 27632755 -161646799 + MER8 DNA MER2_type 1 105 -134 1810 174 79 55 chr6 27632810 27632843 -161646711 + MLT1D LTR MaLR 1 32 -473 1723 173 48 0 chr6 27632843 27632963 -161646591 + AluSx SINE Alu 1 114 -198 188 35 35 0 chr6 27632963 27632992 -161646562 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1723 173 48 0 chr6 27632992 27633160 -161646394 + AluSx SINE Alu 114 303 -9 1810 174 79 55 chr6 27633160 27633619 -161645935 + MLT1D LTR MaLR 32 505 0 23 33 0 0 chr6 27633973 27634003 -161645551 + AT_rich Low_complexity Low_complexity 1 30 0 4642 194 45 15 chr6 27634057 27635990 -161643564 - L1MB7 LINE L1 -19 6663 4673 883 225 182 25 chr6 27635974 27636606 -161642948 - L1MB7 LINE L1 -3948 2698 1968 * 1136 153 0 5 chr6 27636609 27636799 -161642755 - L1MB7 LINE L1 -5581 961 773 759 173 71 56 chr6 27636792 27636850 -161642704 - L1MB7 LINE L1 -6330 212 156 * 2369 57 0 3 chr6 27636850 27637146 -161642408 + AluY SINE Alu 1 295 -16 759 173 71 56 chr6 27637146 27637284 -161642270 - L1MB7 LINE L1 -6386 156 13 899 242 36 52 chr6 27638478 27638730 -161640824 + MIR SINE MIR 2 249 -13 24 0 0 0 chr6 27638969 27638993 -161640561 + AT_rich Low_complexity Low_complexity 1 24 0 559 261 7 0 chr6 27641392 27641534 -161638020 - MER58A DNA MER1_type 0 143 1 247 330 92 9 chr6 27641766 27641875 -161637679 - L2 LINE L2 -5 3267 3150 575 242 63 16 chr6 27642440 27642630 -161636924 - MER21B LTR ERV1 -151 712 514 1557 223 41 27 chr6 27643276 27643518 -161636036 + L1M4 LINE L1 3902 4139 -2007 1489 221 63 16 chr6 27643518 27643962 -161635592 - LTR40c LTR ERVL 0 465 1 1557 223 41 27 chr6 27643962 27644275 -161635279 + L1M4 LINE L1 4139 4465 -1681 840 275 95 85 chr6 27644690 27645606 -161633948 - L2 LINE L2 -817 2497 1573 229 330 188 0 chr6 27645618 27645730 -161633824 + L2 LINE L2 3133 3265 -7 988 90 8 0 chr6 27646005 27646139 -161633415 + AluSp/q SINE Alu 179 313 0 2052 124 0 0 chr6 27646155 27646428 -161633126 + AluSx SINE Alu 1 273 -39 185 308 90 26 chr6 27647756 27647912 -161631642 + L2 LINE L2 2213 2378 -936 21 0 0 0 chr6 27649143 27649164 -161630390 + AT_rich Low_complexity Low_complexity 1 21 0 505 117 0 0 chr6 27649220 27649297 -161630257 - U13 snRNA snRNA -27 77 1 274 233 14 0 chr6 27650448 27650521 -161629033 + MER116 DNA Mariner 1 74 -6 2129 120 14 0 chr6 27650950 27651241 -161628313 - AluSx SINE Alu -15 297 3 2337 87 0 3 chr6 27652023 27652323 -161627231 - AluSg SINE Alu -11 299 1 228 239 0 0 chr6 27653503 27653549 -161626005 + GA-rich Low_complexity Low_complexity 2 47 0 343 246 0 0 chr6 27653916 27653977 -161625577 + G-rich Low_complexity Low_complexity 1 61 0 2635 127 87 30 chr6 27654280 27654577 -161624977 - Tigger1 DNA MER2_type 0 2418 2079 2325 91 3 0 chr6 27654577 27654873 -161624681 - AluSp SINE Alu -14 299 3 2635 127 87 30 chr6 27654873 27655079 -161624475 - Tigger1 DNA MER2_type -339 2079 1886 2050 79 104 7 chr6 27655148 27655590 -161623964 - L1PA6 LINE L1 -3 6151 5667 462 113 82 10 chr6 27655885 27655982 -161623572 - AluY SINE Alu -207 104 1 713 186 90 6 chr6 27655985 27656162 -161623392 - L1M4 LINE L1 -582 5602 5411 2123 138 3 0 chr6 27656690 27656988 -161622566 + AluSx SINE Alu 1 299 -13 223 139 93 0 chr6 27658191 27658234 -161621320 - L2 LINE L2 0 3313 3267 785 285 40 20 chr6 27708290 27708644 -161570910 + L1MC4a LINE L1 5572 5932 -1876 270 294 7 22 chr6 27708651 27708787 -161570767 + L1MC4a LINE L1 6131 6264 -1544 318 325 70 22 chr6 27708857 27709128 -161570426 + L1M4 LINE L1 3547 3830 -2316 182 265 75 80 chr6 27709381 27709581 -161569973 - L2 LINE L2 -223 3049 2851 486 185 0 93 chr6 27709867 27709975 -161569579 - MER63C DNA MER1_type 0 931 834 188 83 0 28 chr6 27709975 27710011 -161569543 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 2130 206 43 18 chr6 27710030 27710521 -161569033 - MER63C DNA MER1_type -189 741 239 280 238 16 0 chr6 27710487 27710550 -161569004 + MER63 DNA MER1_type 463 526 -534 * 280 257 43 0 chr6 27710802 27710872 -161568682 - MER63 DNA MER1_type -987 74 2 630 271 6 34 chr6 27712170 27712347 -161567207 + MLT1F LTR MaLR 1 172 -370 1615 178 76 54 chr6 27712996 27713350 -161566204 + MLT1A1 LTR MaLR 2 363 -2 600 252 128 4 chr6 27713610 27713836 -161565718 + L1MEd LINE L1 557 810 -5309 1199 198 22 101 chr6 27713928 27714373 -161565181 - LTR5 LTR ERVK 0 969 560 1331 218 19 3 chr6 27714498 27714810 -161564744 - LTR5 LTR ERVK -652 317 1 302 252 153 0 chr6 27714913 27715024 -161564530 - MLT1J LTR MaLR -52 459 332 753 292 102 22 chr6 27715077 27715392 -161564162 + MLT1I LTR MaLR 70 409 0 254 95 24 0 chr6 27715965 27716007 -161563547 + (GA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 27716135 27716156 -161563398 + AT_rich Low_complexity Low_complexity 1 21 0 1252 254 47 27 chr6 27716738 27717076 -161562478 + MLT1I LTR MaLR 63 407 -2 2810 145 87 0 chr6 27717440 27717923 -161561631 - Tigger3(Golem) DNA MER2_type -5 3024 2500 649 191 0 0 chr6 27718023 27718149 -161561405 + AluY SINE Alu 184 309 -2 418 221 90 0 chr6 27718159 27718281 -161561273 - Tigger3(Golem) DNA MER2_type -609 2420 2288 1390 307 189 21 chr6 27718360 27719407 -161560147 - L2 LINE L2 -338 2976 1754 411 68 0 0 chr6 27720194 27720253 -161559301 + (CA)n Simple_repeat Simple_repeat 2 60 0 917 294 182 21 chr6 27720833 27721542 -161558012 + L2 LINE L2 2223 3038 -275 5456 194 6 63 chr6 27723656 27724786 -161554768 - L1MEc LINE L1 -2691 3438 2356 416 92 0 0 chr6 27724786 27724851 -161554703 + Alu SINE Alu 246 310 -1 5456 194 6 63 chr6 27724851 27725011 -161554543 - L1MEc LINE L1 -3773 2356 2188 729 259 86 49 chr6 27725638 27726124 -161553430 - L1MEc LINE L1 -4868 1251 748 334 370 22 0 chr6 27726264 27726399 -161553155 - L1MEc LINE L1 -5344 775 638 348 209 133 0 chr6 27726802 27726907 -161552647 - L1MEc LINE L1 -5976 143 25 313 378 14 62 chr6 27726977 27727186 -161552368 - MIR3 SINE MIR -6 202 4 364 247 12 12 chr6 27728310 27728391 -161551163 + MIR SINE MIR 2 82 -180 325 216 8 72 chr6 27729208 27729333 -161550221 - LTR33A LTR ERVL 0 523 407 644 298 19 19 chr6 27730583 27730791 -161548763 - MIR SINE MIR -4 258 51 76 78 0 0 chr6 27731394 27731561 -161547993 + AT_rich Low_complexity Low_complexity 1 167 0 3043 156 26 94 chr6 27731704 27732404 -161547150 + L1MC3 LINE L1 7065 7716 -69 481 269 53 41 chr6 27732762 27732933 -161546621 - MIR SINE MIR -57 205 33 281 319 0 50 chr6 27733913 27734032 -161545522 + L2 LINE L2 2393 2505 -809 236 234 0 0 chr6 27734640 27734687 -161544867 - L2 LINE L2 0 3313 3267 328 154 0 0 chr6 27734711 27734763 -161544791 + Alu SINE Alu 1 52 -250 1288 168 0 0 chr6 27734763 27734965 -161544589 + AluSg/x SINE Alu 109 310 0 652 298 92 5 chr6 27736008 27736226 -161543328 - MIR SINE MIR -17 245 9 2212 132 0 0 chr6 27736669 27736972 -161542582 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr6 27737005 27737034 -161542520 + AT_rich Low_complexity Low_complexity 1 29 0 279 83 0 0 chr6 27737048 27737084 -161542470 - MADE1 DNA Mariner -44 36 1 284 324 93 29 chr6 27737689 27737828 -161541726 + L2 LINE L2 3121 3268 -4 324 287 167 36 chr6 27738237 27738512 -161541042 - MLT1I LTR MaLR -42 367 57 376 171 66 0 chr6 27739563 27739639 -161539915 - L1ME3A LINE L1 -8 6162 6082 264 282 117 55 chr6 27740134 27740297 -161539257 + MIR3 SINE MIR 8 180 -28 1973 143 0 7 chr6 27740425 27740725 -161538829 + AluSq SINE Alu 1 298 -15 1900 164 27 0 chr6 27740806 27741105 -161538449 - AluJb SINE Alu -5 307 1 269 257 56 73 chr6 27741117 27741296 -161538258 - L1MC4a LINE L1 -1810 5998 5823 1152 262 92 46 chr6 27741303 27741761 -161537793 - L1MC4a LINE L1 -2064 5744 5266 399 21 0 0 chr6 27742942 27742990 -161536564 + (CAA)n Simple_repeat Simple_repeat 2 49 0 684 331 100 46 chr6 27743907 27744366 -161535188 - L2 LINE L2 0 3313 2830 273 329 58 36 chr6 27745770 27745907 -161533647 - L2 LINE L2 -218 3054 2915 356 338 98 11 chr6 27746316 27746591 -161532963 - L2 LINE L2 -982 2332 2034 431 125 25 0 chr6 27746593 27746673 -161532881 + GA-rich Low_complexity Low_complexity 4 85 0 1879 190 84 20 chr6 27746856 27747262 -161532292 - MSTB1 LTR MaLR 0 432 1 208 139 0 0 chr6 27748948 27748984 -161530570 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2522 150 20 12 chr6 27749660 27750066 -161529488 - MSTB LTR MaLR -16 410 2 3948 24 0 2 chr6 27751129 27751580 -161527974 + L1PA4 LINE L1 5525 5974 -181 1710 169 13 13 chr6 27751883 27752184 -161527370 - AluJb SINE Alu -11 301 1 222 37 0 0 chr6 27752366 27752393 -161527161 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2021 89 44 0 chr6 27752414 27752685 -161526869 - AluSp SINE Alu -30 283 1 335 272 72 16 chr6 27752972 27753097 -161526457 - LTR24B LTR ERV1 -45 531 400 2614 115 10 30 chr6 27753102 27753501 -161526053 + LTR22A LTR ERVK 68 458 0 9306 139 3 6 chr6 27753558 27754946 -161524608 + HERVK22 LTR ERVK 81 1464 -5373 4921 121 13 3 chr6 27754956 27755656 -161523898 + HERVK22 LTR ERVK 4587 5293 -1544 1650 145 4 0 chr6 27755650 27755892 -161523662 + HERVK22 LTR ERVK 6595 6837 0 * 3075 135 13 2 chr6 27755892 27756345 -161523209 + LTR22A LTR ERVK 1 458 0 2130 84 40 7 chr6 27756397 27756696 -161522858 + AluSq SINE Alu 1 309 -4 497 253 108 82 chr6 27757543 27757958 -161521596 - MER101 LTR ERV1 -36 438 13 1151 124 10 57 chr6 27759939 27760148 -161519406 + AluSx SINE Alu 15 213 -99 343 231 50 33 chr6 27762287 27762370 -161517184 + MER3 DNA MER1_type 46 133 -29 1913 130 0 63 chr6 27762370 27762686 -161516868 - AluSx SINE Alu -16 296 1 343 231 50 33 chr6 27762686 27762723 -161516831 + MER3 DNA MER1_type 133 168 -41 966 198 90 12 chr6 27762726 27763069 -161516485 + MER3 DNA MER1_type 2234 2603 0 2085 119 0 13 chr6 27763069 27763381 -161516173 - AluSx SINE Alu -4 308 1 488 234 48 35 chr6 27764146 27764291 -161515263 - MIR SINE MIR -14 248 102 2007 113 0 38 chr6 27765048 27765340 -161514214 + AluSx SINE Alu 11 291 -21 910 112 0 8 chr6 27765342 27765467 -161514087 + AluSc SINE Alu 104 227 -82 24 0 0 0 chr6 27766280 27766304 -161513250 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 27766346 27766373 -161513181 + AT_rich Low_complexity Low_complexity 1 27 0 1805 146 15 0 chr6 27766636 27766903 -161512651 - AluSx SINE Alu -39 273 3 1206 183 55 116 chr6 27767223 27767638 -161511916 - MLT1B LTR MaLR 0 390 1 1948 188 38 40 chr6 27767638 27767701 -161511853 - MLT1B-int LTR MaLR 0 1735 1673 2312 84 0 3 chr6 27767701 27767998 -161511556 + AluY SINE Alu 1 296 -15 1948 188 38 40 chr6 27767998 27768355 -161511199 - MLT1B-int LTR MaLR -62 1673 1316 1450 140 16 102 chr6 27768579 27768893 -161510661 + AluY SINE Alu 11 297 -14 1814 228 16 53 chr6 27769022 27769173 -161510381 - MLT1B-int LTR MaLR -486 885 730 1770 171 3 10 chr6 27769173 27769482 -161510072 + AluJb SINE Alu 1 307 -5 1814 228 16 53 chr6 27769482 27769877 -161509677 - MLT1B-int LTR MaLR -641 730 268 1061 140 6 0 chr6 27769910 27770067 -161509487 - AluSg/x SINE Alu -35 275 118 1122 208 41 0 chr6 27770172 27770465 -161509089 + L1MB7 LINE L1 4188 4492 -1654 3098 205 31 16 chr6 27770500 27771517 -161508037 + L1MB7 LINE L1 4963 5986 -198 306 0 0 0 chr6 27772253 27772287 -161507267 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 780 142 8 30 chr6 27772417 27772551 -161507003 + AluJo SINE Alu 1 131 -171 3158 145 41 46 chr6 27772657 27773263 -161506291 + LTR26 LTR ERV1 1 603 0 2970 227 237 19 chr6 27774027 27774180 -161505374 + L1MC4 LINE L1 6459 6577 -1465 276 111 0 0 chr6 27774180 27774225 -161505329 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 2970 227 237 19 chr6 27774225 27775256 -161504298 + L1MC4 LINE L1 6577 7901 -141 341 305 80 31 chr6 27775737 27775963 -161503591 + L1M4 LINE L1 3792 4028 -2118 1593 156 11 94 chr6 27777206 27777558 -161501996 + MER101 LTR ERV1 2 324 -150 626 107 0 0 chr6 27777564 27777648 -161501906 + AluS SINE Alu 8 91 -221 540 152 15 1 chr6 27777757 27777855 -161501699 + MER101 LTR ERV1 281 483 -87 879 342 77 24 chr6 27777866 27778448 -161501106 + L2 LINE L2 2364 2976 -338 266 309 115 23 chr6 27778651 27778868 -161500686 + L2 LINE L2 3033 3269 -44 804 199 51 0 chr6 27778917 27779093 -161500461 + Charlie4 DNA MER1_type 32 216 -1745 * 2002 200 60 14 chr6 27779085 27779531 -161500023 + MER101 LTR ERV1 6 472 -2 292 204 126 0 chr6 27779534 27779637 -161499917 + Charlie4 DNA MER1_type 1754 1869 -92 982 184 0 13 chr6 27781668 27781826 -161497728 + AluJo SINE Alu 134 289 -23 22 0 0 0 chr6 27781898 27781920 -161497634 + AT_rich Low_complexity Low_complexity 1 22 0 341 292 28 0 chr6 27781920 27782064 -161497490 - L1M4 LINE L1 -1847 4299 4152 406 341 154 6 chr6 27782118 27782346 -161497208 + L2 LINE L2 1447 1640 -1674 194 0 39 0 chr6 27782346 27782372 -161497182 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 406 341 154 6 chr6 27782372 27782480 -161497074 + L2 LINE L2 1640 1833 -1481 984 239 59 63 chr6 27782771 27782822 -161496732 - L1MC5 LINE L1 -431 7530 7480 1821 105 20 0 chr6 27782822 27783069 -161496485 - AluSg SINE Alu -18 292 41 984 239 59 63 chr6 27783069 27783494 -161496060 - L1MC5 LINE L1 -481 7480 7056 382 279 184 35 chr6 27783498 27783922 -161495632 + L2 LINE L2 1825 2409 -905 496 321 48 36 chr6 27785346 27785704 -161493850 - L1MEd LINE L1 -5757 362 1 972 206 79 9 chr6 27787279 27787507 -161492047 + ORSL DNA AcHobo 11 254 -21 602 242 55 97 chr6 27787704 27788106 -161491448 - L1MDa LINE L1 -4506 2034 1651 2450 60 30 0 chr6 27788147 27788447 -161491107 - AluY SINE Alu -2 309 1 258 287 158 43 chr6 27788794 27788958 -161490596 + MIR SINE MIR 20 202 -60 595 317 66 21 chr6 27788989 27789232 -161490322 - MIR SINE MIR -6 256 3 8993 201 35 20 chr6 27789373 27791097 -161488457 + L1MA8 LINE L1 2756 4951 -2614 189 0 0 0 chr6 27791097 27791118 -161488436 + (CAA)n Simple_repeat Simple_repeat 1 21 0 8993 201 35 20 chr6 27791118 27791795 -161487759 + L1MA8 LINE L1 4951 5616 -1949 4308 138 10 15 chr6 27791772 27792671 -161486883 + L1PB3 LINE L1 6443 7336 -237 * 5295 102 5 12 chr6 27792680 27793456 -161486098 - L1PB1 LINE L1 -5 6146 5376 1488 144 8 16 chr6 27793458 27793714 -161485840 + L1PB3 LINE L1 7318 7571 -2 5060 150 26 8 chr6 27793731 27794605 -161484949 + L1PB4 LINE L1 5259 6148 -8 5958 137 35 7 chr6 27794710 27796589 -161482965 + L1MA8 LINE L1 5783 7708 -2 198 0 0 0 chr6 27798771 27798793 -161480761 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3079 85 2 21 chr6 27798798 27799234 -161480320 - L1PA13 LINE L1 -20 6143 5716 674 199 35 14 chr6 27799421 27799562 -161479992 - L2 LINE L2 -3 3310 3167 322 252 79 47 chr6 27799561 27799688 -161479866 - MIR SINE MIR -65 197 67 * 800 196 27 45 chr6 27799753 27799912 -161479642 + L1MCa LINE L1 1042 1202 -5224 1920 124 0 11 chr6 27799912 27800194 -161479360 + AluSx SINE Alu 1 279 -33 399 21 0 0 chr6 27800194 27800242 -161479312 + (CA)n Simple_repeat Simple_repeat 1 48 0 800 196 27 45 chr6 27800242 27800305 -161479249 + L1MCa LINE L1 1200 1261 -5165 402 162 0 0 chr6 27800345 27800467 -161479087 + GA-rich Low_complexity Low_complexity 1 122 0 487 188 75 0 chr6 27800467 27800600 -161478954 + L1MCa LINE L1 1267 1409 -5017 263 213 33 0 chr6 27800617 27800678 -161478876 + LTR36 LTR ERV1 1 63 -548 1261 204 75 132 chr6 27800704 27801302 -161478252 + LTR36 LTR ERV1 48 611 0 246 153 153 0 chr6 27801302 27801374 -161478180 + L1MCa LINE L1 1432 1514 -4912 261 355 92 13 chr6 27801649 27801801 -161477753 - MER115 DNA AcHobo -524 169 6 206 336 82 9 chr6 27801809 27801919 -161477635 - L2 LINE L2 -1407 1907 1790 187 256 56 44 chr6 27801944 27802034 -161477520 - L2 LINE L2 -1922 1392 1302 2376 90 0 3 chr6 27802059 27802359 -161477195 - AluSq SINE Alu -14 299 1 408 250 137 68 chr6 27802872 27803120 -161476434 - L3 LINE CR1 -174 1403 1139 790 333 61 37 chr6 27803221 27803681 -161475873 + LTR33 LTR ERVL 1 471 -50 266 269 103 0 chr6 27803687 27803765 -161475789 + MIR SINE MIR 78 163 -99 262 257 124 0 chr6 27803887 27804000 -161475554 + MER46C DNA MER2_type 167 293 -45 185 398 32 0 chr6 27804049 27804142 -161475412 + MIR SINE MIR 158 253 -9 2481 37 3 59 chr6 27805809 27806131 -161473423 + AluY SINE Alu 1 304 -7 200 35 35 0 chr6 27806688 27806717 -161472837 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3039 217 70 28 chr6 27808079 27809013 -161470541 - L1ME1 LINE L1 -76 6370 5400 518 191 88 41 chr6 27809022 27809169 -161470385 - L1M4 LINE L1 -1286 5140 4987 871 229 66 4 chr6 27809169 27809427 -161470127 + L1M4 LINE L1 5131 5404 -1022 406 200 10 0 chr6 27809424 27809524 -161470030 + L1ME2 LINE L1 1813 1913 -4513 * 31 44 0 0 chr6 27809601 27809646 -161469908 + AT_rich Low_complexity Low_complexity 1 45 0 873 254 80 48 chr6 27809662 27810040 -161469514 + L1ME2 LINE L1 2044 2392 -4034 * 1358 207 20 23 chr6 27810033 27810482 -161469072 - L1ME1 LINE L1 -3614 2812 2367 2253 214 56 19 chr6 27810592 27811274 -161468280 - L1ME1 LINE L1 -4764 1662 956 21 0 0 0 chr6 27811939 27811960 -161467594 + AT_rich Low_complexity Low_complexity 1 21 0 396 219 110 32 chr6 27812298 27812453 -161467101 + L1ME2 LINE L1 5028 5194 -1232 748 224 103 29 chr6 27812462 27812743 -161466811 + L1ME2 LINE L1 5931 6232 -212 1316 163 36 42 chr6 27812743 27813049 -161466505 - MLT1E3 LTR MaLR -320 304 1 893 228 43 120 chr6 27813049 27813492 -161466062 - MLT1E3-int LTR MaLR 0 1371 963 262 170 0 0 chr6 27813537 27813584 -161465970 - MLT1E3 LTR MaLR -577 47 1 522 295 18 78 chr6 27813585 27813866 -161465688 - L1M4 LINE L1 -2172 3974 3711 394 268 28 28 chr6 27813964 27814143 -161465411 + L1MC4a LINE L1 5704 5882 -1926 300 333 86 74 chr6 27814207 27814640 -161464914 + L1MEd LINE L1 66 503 -5616 375 273 252 0 chr6 27814850 27815088 -161464466 + L1MEd LINE L1 2860 3157 -2972 719 259 109 4 chr6 27816044 27816291 -161463263 + L1MCa LINE L1 1693 1965 -4461 278 207 24 24 chr6 27816660 27816742 -161462812 + (CATA)n Simple_repeat Simple_repeat 2 83 0 395 148 50 10 chr6 27817637 27817738 -161461816 + CT-rich Low_complexity Low_complexity 2 106 0 1425 205 52 0 chr6 27817934 27818202 -161461352 - AluJo SINE Alu -30 282 1 209 256 23 0 chr6 27818345 27818388 -161461166 + L2 LINE L2 3210 3253 -19 379 267 38 80 chr6 27818814 27819241 -161460313 - L1MC5 LINE L1 -44 7917 7509 1114 224 88 98 chr6 27819629 27819667 -161459887 - L1MC5 LINE L1 -753 7208 7171 2546 56 0 0 chr6 27819667 27819969 -161459585 + AluY SINE Alu 1 302 -9 1114 224 88 98 chr6 27819969 27820533 -161459021 - L1MC5 LINE L1 -790 7171 6612 381 321 24 45 chr6 27820740 27821030 -161458524 - LTR16C LTR ERVL -15 476 193 1885 147 167 37 chr6 27821030 27821067 -161458487 - LTR46 LTR ERV1 0 460 429 276 30 0 0 chr6 27821067 27821100 -161458454 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 279 0 0 0 chr6 27821099 27821130 -161458424 + (GA)n Simple_repeat Simple_repeat 2 32 0 1885 147 167 37 chr6 27821100 27821499 -161458055 - LTR46 LTR ERV1 -31 429 1 2071 115 0 3 chr6 27821499 27821812 -161457742 - LTR46-int LTR ERV1 0 6985 6674 393 290 8 0 chr6 27821914 27822038 -161457516 - HERV17 LTR ERV1 -446 8180 8056 9218 123 7 9 chr6 27822138 27823647 -161455907 - HERV17 LTR ERV1 -309 6676 5171 1026 331 60 10 chr6 27823702 27824383 -161455171 - HERV16 LTR ERVL -2025 3002 2296 338 282 69 8 chr6 27825327 27825458 -161454096 - LTR16A1 LTR ERVL 0 457 319 336 286 45 84 chr6 27825556 27825734 -161453820 - LTR16C LTR ERVL -288 203 33 709 292 105 45 chr6 27826388 27826741 -161452813 + MER69 DNA AcHobo 35 408 -818 438 225 9 0 chr6 27826754 27826865 -161452689 + MER69 DNA AcHobo 1793 1904 -622 274 358 68 54 chr6 27827625 27828175 -161451379 + L2 LINE L2 1728 2298 -1016 1794 193 96 25 chr6 27828175 27828611 -161450943 + MLT1C LTR MaLR 1 467 0 274 358 68 54 chr6 27828611 27828967 -161450587 + L2 LINE L2 2298 2647 -667 464 281 191 16 chr6 27829694 27830128 -161449426 - LTR33 LTR ERVL -11 510 1 375 203 95 6 chr6 27831323 27831481 -161448073 + MER113 DNA MER1_type? 68 239 -282 1011 204 113 6 chr6 27831494 27831813 -161447741 + L1ME3 LINE L1 5691 6043 -119 2145 82 3 14 chr6 27831814 27832121 -161447433 - AluSc SINE Alu 0 304 1 4777 126 21 1 chr6 27832146 27832937 -161446617 - L1PA14 LINE L1 -17 6144 5338 22 0 0 0 chr6 27832937 27832959 -161446595 + AT_rich Low_complexity Low_complexity 1 22 0 4261 103 2 5 chr6 27832959 27833579 -161445975 - L1PB1 LINE L1 0 6151 5534 718 94 0 0 chr6 27833596 27833702 -161445852 - L1PB1 LINE L1 -680 5471 5366 2050 205 17 0 chr6 27833704 27834172 -161445382 + L1PB1 LINE L1 4885 5360 -786 472 164 77 0 chr6 27834172 27834276 -161445278 - L1PA14 LINE L1 -805 5369 5258 21 0 0 0 chr6 27834774 27834795 -161444759 + AT_rich Low_complexity Low_complexity 1 21 0 2214 212 70 17 chr6 27836286 27837208 -161442346 - L1MC/D LINE L1 -738 5573 4434 2552 262 57 47 chr6 27837218 27838372 -161441182 - L1MC/D LINE L1 -4718 1678 513 1908 209 155 52 chr6 27838439 27838617 -161440937 - L1M4 LINE L1 -2845 3301 3143 2475 61 0 10 chr6 27838617 27838928 -161440626 - AluY SINE Alu -3 308 1 1908 209 155 52 chr6 27838928 27839661 -161439893 - L1M4 LINE L1 -3003 3143 2296 251 296 14 14 chr6 27839699 27839770 -161439784 - L2 LINE L2 -77 3195 3125 269 221 22 110 chr6 27841234 27841370 -161438184 - L1ME LINE L1 -459 5662 5539 1572 204 6 40 chr6 27841425 27841748 -161437806 - AluJo SINE Alu 0 312 1 2282 100 0 3 chr6 27841776 27842076 -161437478 + AluSg SINE Alu 1 299 -11 1628 190 3 20 chr6 27842112 27842412 -161437142 + AluJo SINE Alu 1 295 -17 405 274 92 30 chr6 27842438 27842775 -161436779 - L1ME LINE L1 -752 5394 5061 300 330 39 0 chr6 27842836 27842939 -161436615 - MIR SINE MIR -123 139 33 246 333 32 63 chr6 27842974 27843226 -161436328 + L2 LINE L2 1442 1685 -1629 901 110 0 24 chr6 27843233 27843360 -161436194 - AluSg/x SINE Alu -22 290 167 234 0 0 0 chr6 27843388 27843414 -161436140 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 893 325 87 15 chr6 27843426 27843887 -161435667 + L2 LINE L2 1729 2222 -1092 595 230 97 0 chr6 27844535 27844700 -161434854 - MER63A DNA MER1_type -29 181 1 328 268 0 10 chr6 27845244 27845341 -161434213 - L1ME3A LINE L1 -284 5886 5791 229 233 0 27 chr6 27845988 27846061 -161433493 - L1MEd LINE L1 -5025 1094 1024 434 246 35 12 chr6 27847953 27848124 -161431430 + (TA)n Simple_repeat Simple_repeat 2 176 0 2748 273 150 19 chr6 27849090 27850270 -161429284 - L2 LINE L2 -55 3258 1942 389 127 84 0 chr6 27850275 27850346 -161429208 - MIR SINE MIR -77 185 109 186 340 50 10 chr6 27850789 27850889 -161428665 + MIR SINE MIR 138 241 -21 2155 254 31 20 chr6 27851219 27851806 -161427748 + MLT1E LTR MaLR 1 593 0 868 269 174 56 chr6 27852206 27852638 -161426916 + L2 LINE L2 2320 2802 -512 428 310 115 15 chr6 27853852 27854052 -161425502 + MIR SINE MIR 18 237 -25 2079 139 6 3 chr6 27854723 27855060 -161424494 - THE1B LTR MaLR -26 338 1 1433 204 3 19 chr6 27855060 27855378 -161424176 - L1ME1 LINE L1 -251 5915 5603 5367 24 3 3 chr6 27856232 27856863 -161422691 + L1PA4 LINE L1 5525 6155 0 1455 247 21 21 chr6 27857196 27857617 -161421937 - MER63 DNA MER1_type 0 1061 641 204 111 0 0 chr6 27857640 27857676 -161421878 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 225 0 56 chr6 27857676 27857765 -161421789 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 257 89 22 0 chr6 27857772 27857817 -161421737 + (TA)n Simple_repeat Simple_repeat 1 46 0 245 299 35 46 chr6 27859014 27859101 -161420453 - MIR SINE MIR -163 99 14 225 0 0 0 chr6 27859952 27859977 -161419577 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 1588 173 29 32 chr6 27861301 27861614 -161417940 + AluJo SINE Alu 1 312 0 22 35 0 0 chr6 27862916 27862945 -161416609 + AT_rich Low_complexity Low_complexity 1 29 0 598 297 99 33 chr6 27863028 27863634 -161415920 + L1M4 LINE L1 3964 4609 -1537 699 240 173 14 chr6 27863762 27863970 -161415584 - MIR SINE MIR -16 246 6 558 159 25 13 chr6 27864109 27864266 -161415288 + CT-rich Low_complexity Low_complexity 4 162 0 342 211 0 131 chr6 27865626 27865801 -161413753 - MER112 DNA MER1_type -101 159 8 371 61 0 0 chr6 27866785 27866834 -161412720 - MADE1 DNA Mariner 0 80 32 318 48 0 0 chr6 27866944 27866986 -161412568 - MADE1 DNA Mariner -38 42 1 252 0 0 0 chr6 27867673 27867701 -161411853 + (CA)n Simple_repeat Simple_repeat 2 29 0 2166 143 35 78 chr6 27868309 27868821 -161410733 + L1MA8 LINE L1 5800 6289 -2 21 0 0 0 chr6 27870002 27870023 -161409531 + AT_rich Low_complexity Low_complexity 1 21 0 642 85 0 21 chr6 27871293 27871387 -161408167 - THE1B LTR MaLR 0 364 273 1489 157 30 8 chr6 27871496 27871764 -161407790 - THE1B LTR MaLR -90 274 1 318 281 130 70 chr6 27871936 27872381 -161407173 - L1 LINE L1 -1472 4674 4203 1583 184 47 44 chr6 27872486 27872850 -161406704 - MLT1A1 LTR MaLR 0 365 1 608 278 28 84 chr6 27872950 27873234 -161406320 - REP3 LTR ERV -170 392 125 30 27 0 0 chr6 27873234 27873271 -161406283 + AT_rich Low_complexity Low_complexity 1 37 0 431 254 33 8 chr6 27873295 27873417 -161406137 - REP3 LTR ERV -437 125 1 21 36 0 0 chr6 27873590 27873618 -161405936 + AT_rich Low_complexity Low_complexity 1 28 0 388 252 65 7 chr6 27873702 27873857 -161405697 + HAL1 LINE L1 1505 1668 -839 384 338 56 8 chr6 27873902 27874168 -161405386 + L1MC/D LINE L1 5446 5724 -2084 537 230 36 24 chr6 27874178 27874343 -161405211 - MIR SINE MIR 0 262 96 258 280 0 32 chr6 27874504 27874597 -161404957 + MLT1I LTR MaLR 320 409 0 793 308 53 15 chr6 27875058 27875396 -161404158 - MLT1I LTR MaLR -33 376 26 26 30 0 0 chr6 27875967 27876000 -161403554 + AT_rich Low_complexity Low_complexity 1 33 0 476 208 120 8 chr6 27876789 27876914 -161402640 - MLT1I LTR MaLR -5 404 266 246 343 19 0 chr6 27876989 27877097 -161402457 - MLT1I LTR MaLR -240 169 60 489 323 139 11 chr6 27877442 27877810 -161401744 - L1MEd LINE L1 -5382 737 323 888 219 92 82 chr6 27878282 27878674 -161400880 - MSTD LTR MaLR 0 396 1 2453 70 3 10 chr6 27878731 27879044 -161400510 - AluSp SINE Alu -2 311 1 184 269 21 11 chr6 27879414 27879507 -161400047 + CT-rich Low_complexity Low_complexity 2 95 0 227 326 0 22 chr6 27879700 27879792 -161399762 - MLT1K LTR MaLR -339 249 160 302 248 19 76 chr6 27879945 27880102 -161399452 - MER112 DNA MER1_type -101 159 12 399 236 29 9 chr6 27880831 27880947 -161398607 + HsTC2 DNA Tc2 1273 1392 -506 2323 112 0 0 chr6 27882605 27882917 -161396637 - AluSx SINE Alu 0 312 1 2884 3 0 0 chr6 27882982 27883292 -161396262 + AluYa5 SINE Alu 1 310 -1 236 289 35 9 chr6 27883633 27883747 -161395807 - MLT1L LTR MaLR -4 611 495 314 265 44 52 chr6 27883908 27884044 -161395510 - MLT1L LTR MaLR -358 257 123 293 226 97 40 chr6 27884147 27884271 -161395283 + L2 LINE L2 3073 3203 -110 303 28 0 0 chr6 27884416 27884452 -161395102 + (CA)n Simple_repeat Simple_repeat 1 36 0 402 307 66 21 chr6 27884534 27884821 -161394733 - ERVL LTR ERVL -440 5324 5025 1783 181 88 38 chr6 27885120 27885539 -161394015 - MLT2B1 LTR ERVL -76 444 5 574 224 75 87 chr6 27885541 27885942 -161393612 + L1ME3A LINE L1 4746 5141 -1005 2177 185 91 33 chr6 27885957 27886509 -161393045 + L1MD3 LINE L1 7405 7988 -7 282 259 111 37 chr6 27886488 27886588 -161392966 + L1ME3A LINE L1 5931 6022 -148 * 1116 147 118 0 chr6 27886588 27886799 -161392755 - MER46A DNA MER2_type 0 236 1 282 259 111 37 chr6 27886799 27886914 -161392640 + L1ME3A LINE L1 6022 6162 -8 1847 174 7 3 chr6 27887048 27887342 -161392212 - AluJo SINE Alu -17 295 1 2209 120 0 0 chr6 27887950 27888241 -161391313 + AluSx SINE Alu 1 291 -21 1522 75 0 0 chr6 27888551 27888738 -161390816 + AluSg/x SINE Alu 115 301 -9 342 115 0 0 chr6 27889590 27889642 -161389912 - MLT2B1 LTR ERVL 0 520 469 472 294 125 0 chr6 27889678 27889862 -161389692 + L2 LINE L2 3102 3308 -5 21 0 0 0 chr6 27891006 27891027 -161388527 + AT_rich Low_complexity Low_complexity 1 21 0 2215 116 3 0 chr6 27891632 27891935 -161387619 + AluSx SINE Alu 1 304 -8 896 98 0 0 chr6 27892080 27892203 -161387351 - AluSg/x SINE Alu -2 310 188 363 252 0 10 chr6 27892283 27892386 -161387168 - Charlie2a DNA MER1_type -1 2861 2760 665 184 202 26 chr6 27892398 27892631 -161386923 - Charlie2a DNA MER1_type -1856 1006 733 443 202 233 45 chr6 27892773 27892996 -161386558 - Charlie2a DNA MER1_type -2435 347 83 434 277 102 73 chr6 27893158 27893569 -161385985 + HAL1b LINE L1 254 676 -672 607 215 97 0 chr6 27893606 27893750 -161385804 - MER96 DNA MER1_type? -16 159 2 748 187 0 8 chr6 27893959 27894093 -161385461 + FLAM_C SINE Alu 1 133 0 613 287 123 74 chr6 27894291 27894385 -161385169 + L1M4 LINE L1 3090 3178 -2968 2287 99 0 0 chr6 27894385 27894692 -161384862 + AluSx SINE Alu 1 307 0 613 287 123 74 chr6 27894692 27895416 -161384138 + L1M4 LINE L1 3178 3949 -2197 2488 69 0 3 chr6 27895897 27896203 -161383351 + AluY SINE Alu 1 305 -6 1780 249 145 23 chr6 27896316 27897066 -161382488 - L1ME3A LINE L1 -27 6143 5302 576 296 6 11 chr6 27898267 27898446 -161381108 + MER5B DNA MER1_type 1 178 0 183 61 0 82 chr6 27898988 27899037 -161380517 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 199 386 144 25 chr6 27899451 27899687 -161379867 + L2 LINE L2 2814 3077 -195 228 259 17 17 chr6 27899728 27899786 -161379768 + L2 LINE L2 3236 3293 -20 797 265 59 0 chr6 27900159 27900363 -161379191 + MIR SINE MIR 21 236 -26 297 0 0 0 chr6 27900366 27900399 -161379155 + (TA)n Simple_repeat Simple_repeat 1 33 0 2099 122 7 14 chr6 27901307 27901601 -161377953 - AluSg SINE Alu -18 292 1 690 235 151 0 chr6 27901647 27901826 -161377728 + MIR SINE MIR 3 208 -54 292 341 92 54 chr6 27903062 27903323 -161376231 - L2 LINE L2 -56 3216 2946 256 296 0 0 chr6 27904170 27904224 -161375330 - L2 LINE L2 -86 3186 3133 663 221 33 11 chr6 27904372 27904553 -161375001 + MER112 DNA MER1_type 65 249 -11 21 0 0 0 chr6 27904560 27904581 -161374973 + AT_rich Low_complexity Low_complexity 1 21 0 2535 40 23 0 chr6 27904646 27904948 -161374606 + AluY SINE Alu 1 309 -2 255 350 92 31 chr6 27905011 27905337 -161374217 - L2 LINE L2 -337 2977 2632 801 268 9 40 chr6 27905575 27905803 -161373751 + MIR SINE MIR 2 222 -40 22 35 0 0 chr6 27907148 27907177 -161372377 + AT_rich Low_complexity Low_complexity 1 29 0 240 171 29 29 chr6 27907229 27907299 -161372255 + A-rich Low_complexity Low_complexity 1 70 0 1122 231 9 69 chr6 27907934 27908134 -161371420 - LTR37A LTR ERV1 -2 424 261 1966 120 33 0 chr6 27908134 27908431 -161371123 + AluSx SINE Alu 1 306 0 1122 231 9 69 chr6 27908431 27908662 -161370892 - LTR37A LTR ERV1 -165 261 18 2303 116 0 0 chr6 27909751 27910045 -161369509 + AluSx SINE Alu 5 298 -14 366 330 45 56 chr6 27910167 27910434 -161369120 + L3 LINE CR1 1255 1518 -59 2251 84 7 7 chr6 27910452 27910749 -161368805 + AluSc SINE Alu 1 297 -12 368 307 64 0 chr6 27911260 27911400 -161368154 + MIR SINE MIR 56 204 -58 2111 130 3 0 chr6 27912005 27912306 -161367248 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr6 27912938 27912961 -161366593 + (TTG)n Simple_repeat Simple_repeat 2 24 0 312 318 139 20 chr6 27913288 27913439 -161366115 - MIR3 SINE MIR -23 185 17 192 365 58 19 chr6 27914385 27914541 -161365013 + MIR SINE MIR 20 181 -81 207 286 36 0 chr6 27914902 27914958 -161364596 + MIR3 SINE MIR 111 168 -40 2013 120 3 55 chr6 27915013 27915338 -161364216 - AluSx SINE Alu -4 308 1 281 280 137 42 chr6 27916094 27916262 -161363292 + MIR SINE MIR 20 203 -59 2556 185 51 19 chr6 27916700 27917186 -161362368 - MLT1D LTR MaLR 0 505 4 1720 146 48 4 chr6 27917312 27917580 -161361974 + AluJo SINE Alu 1 280 -32 719 35 53 9 chr6 27917580 27917693 -161361861 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 357 286 34 50 chr6 27917937 27918019 -161361535 + L2 LINE L2 3197 3278 -35 1921 198 54 9 chr6 27918019 27918368 -161361186 + MLT1A1 LTR MaLR 1 365 0 357 286 34 50 chr6 27918368 27918404 -161361150 + L2 LINE L2 3278 3313 0 2196 68 0 30 chr6 27918635 27918930 -161360624 + L1PA10 LINE L1 5881 6166 -2 2066 117 7 0 chr6 27918966 27919287 -161360267 - AluSx SINE Alu 0 323 1 230 245 92 31 chr6 27920055 27920153 -161359401 + L1ME LINE L1 5727 5830 -332 2098 123 3 7 chr6 27920385 27920686 -161358868 + AluSq SINE Alu 1 300 -13 216 231 0 0 chr6 27920806 27920858 -161358696 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 207 288 12 12 chr6 27920943 27921023 -161358531 + (CA)n Simple_repeat Simple_repeat 1 80 0 909 207 83 87 chr6 27922577 27922843 -161356711 + AluJo SINE Alu 2 266 -46 1173 233 52 39 chr6 27922843 27923148 -161356406 + MLT1E LTR MaLR 285 593 0 2060 131 0 7 chr6 27923729 27924047 -161355507 - AluSx SINE Alu 0 316 1 204 276 0 17 chr6 27924315 27924373 -161355181 - MER5B DNA MER1_type 0 178 122 204 244 0 0 chr6 27924497 27924542 -161355012 - MER5B DNA MER1_type -1 177 133 696 96 0 0 chr6 27924544 27924638 -161354916 - AluSg/x SINE Alu -9 301 208 368 307 53 0 chr6 27924689 27924803 -161354751 - MER5B DNA MER1_type -57 121 2 288 0 0 0 chr6 27925465 27925497 -161354057 + (TG)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr6 27925496 27925519 -161354035 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1864 142 40 0 chr6 27925675 27925950 -161353604 + AluSq SINE Alu 1 286 -27 22 56 0 0 chr6 27925951 27925987 -161353567 + AT_rich Low_complexity Low_complexity 1 36 0 1572 198 3 22 chr6 27925989 27926303 -161353251 + AluJo SINE Alu 1 308 -4 638 228 264 36 chr6 27926313 27926729 -161352825 - L1MC4 LINE L1 0 8042 7532 360 298 0 0 chr6 27928235 27928339 -161351215 + L1M4 LINE L1 4060 4163 -1983 * 1546 223 19 123 chr6 27928333 27928621 -161350933 + L1M4 LINE L1 2133 2449 -3697 1597 127 0 0 chr6 27928621 27928842 -161350712 + AluSg/x SINE Alu 83 303 -7 1782 124 8 0 chr6 27928843 27929092 -161350462 + AluSx SINE Alu 46 296 -16 1546 223 19 123 chr6 27929092 27929470 -161350084 + L1M4 LINE L1 2448 2732 -3414 4047 174 19 7 chr6 27929477 27930209 -161349345 - L1MA5 LINE L1 0 6300 5560 1127 223 74 11 chr6 27930291 27930560 -161348994 - LTR43 LTR ERV1 -141 461 176 1902 120 0 28 chr6 27930756 27930946 -161348608 - L1MA5 LINE L1 -710 5587 5406 2704 98 8 22 chr6 27930946 27931313 -161348241 + THE1B LTR MaLR 3 364 0 1902 120 0 28 chr6 27931313 27931413 -161348141 - L1MA5 LINE L1 -891 5406 5305 748 206 0 8 chr6 27931413 27931544 -161348010 + FLAM_C SINE Alu 1 130 -3 674 255 35 4 chr6 27931569 27931824 -161347730 + L1M4 LINE L1 2791 3053 -3093 285 109 0 0 chr6 27931987 27932033 -161347521 + (GA)n Simple_repeat Simple_repeat 1 46 0 1837 171 3 10 chr6 27932104 27932409 -161347145 + AluJb SINE Alu 1 303 -9 254 299 69 0 chr6 27932431 27932518 -161347036 + L1MEd LINE L1 561 653 -5466 1885 109 67 4 chr6 27932621 27932937 -161346617 + AluSx SINE Alu 1 333 0 1685 226 72 77 chr6 27932979 27933450 -161346104 - L1MCa LINE L1 -4013 2594 2122 180 0 0 0 chr6 27933450 27933470 -161346084 + (TG)n Simple_repeat Simple_repeat 1 20 0 1944 151 0 0 chr6 27933470 27933749 -161345805 - AluSx SINE Alu -33 279 1 1685 226 72 77 chr6 27933749 27933979 -161345575 - L1MCa LINE L1 -4483 2124 1895 328 304 101 9 chr6 27934163 27934413 -161345141 - L1MCa LINE L1 -4714 1893 1459 2349 93 0 13 chr6 27934421 27934734 -161344820 - AluSg SINE Alu -1 309 1 1932 228 37 14 chr6 27934736 27935653 -161343901 - L1M4 LINE L1 -3320 3062 1088 227 233 11 111 chr6 27935653 27935743 -161343811 - Alu SINE Alu -7 294 214 3424 142 39 24 chr6 27935812 27935899 -161343655 - MER41B LTR ERV1 -35 600 516 2019 140 3 31 chr6 27935899 27936220 -161343334 + AluSx SINE Alu 1 312 0 1947 151 3 22 chr6 27936222 27936534 -161343020 + AluSx SINE Alu 1 306 -6 3424 142 39 24 chr6 27936534 27937034 -161342520 - MER41B LTR ERV1 -119 516 1 1413 115 10 0 chr6 27937034 27937226 -161342328 - MER41B-int LTR ERV1 0 5946 5753 357 154 0 29 chr6 27937228 27937293 -161342261 - Alu SINE Alu -254 48 1 2653 135 20 50 chr6 27937293 27937891 -161341663 - MER41B-int LTR ERV1 -3360 2586 1944 * 11541 122 39 11 chr6 27937870 27939597 -161339957 - MER41B-int LTR ERV1 -4171 1775 1 4428 148 2 2 chr6 27939597 27940232 -161339322 - MER41B LTR ERV1 0 635 1 1300 151 0 59 chr6 27940233 27940435 -161339119 - AluJo SINE Alu -88 224 36 3443 111 78 83 chr6 27940435 27940624 -161338930 + MER41B LTR ERV1 1 189 -446 1683 159 0 4 chr6 27940624 27940888 -161338666 + AluSx SINE Alu 1 263 -49 3443 111 78 83 chr6 27940888 27941336 -161338218 + MER41B LTR ERV1 189 635 0 1300 151 0 59 chr6 27941336 27941371 -161338183 - AluJo SINE Alu -276 36 1 26 50 0 0 chr6 27941375 27941415 -161338139 + AT_rich Low_complexity Low_complexity 1 40 0 2341 161 95 44 chr6 27941693 27942239 -161337315 - MER4B LTR ERV1 -36 574 1 1978 188 51 14 chr6 27942239 27942669 -161336885 - LTR29 LTR ERV1 -15 607 162 250 292 0 0 chr6 27942712 27942777 -161336777 - MER34 LTR ERV1 -457 85 21 2011 117 7 13 chr6 27942839 27943138 -161336416 + AluSx SINE Alu 2 298 -14 801 133 0 23 chr6 27943203 27943331 -161336223 - FLAM_C SINE Alu -13 130 6 810 256 19 0 chr6 27943462 27943622 -161335932 + FRAM SINE Alu 1 163 -3 1458 150 261 18 chr6 27943664 27943947 -161335607 + LTR29 LTR ERV1 1 382 -240 3051 123 103 0 chr6 27943947 27944401 -161335153 + MER61D LTR ERV1 1 501 0 1458 150 261 18 chr6 27944401 27944458 -161335096 + LTR29 LTR ERV1 382 424 -198 526 170 259 34 chr6 27944452 27944599 -161334955 + LTR49 LTR ERV1 416 595 0 * 277 179 43 57 chr6 27944812 27944952 -161334602 + (CA)n Simple_repeat Simple_repeat 2 139 0 434 323 133 9 chr6 27944996 27945327 -161334227 - L2 LINE L2 -19 3294 2923 3956 153 19 6 chr6 27945685 27945851 -161333703 - MER41B LTR ERV1 0 635 473 2167 129 49 52 chr6 27945851 27946216 -161333338 + THE1B LTR MaLR 1 364 0 3956 153 19 6 chr6 27946216 27946676 -161332878 - MER41B LTR ERV1 -162 473 1 266 143 26 91 chr6 27949052 27949129 -161330425 + LTR9 LTR ERV1 455 526 -86 904 137 48 24 chr6 27949253 27949421 -161330133 - LTR49 LTR ERV1 0 595 424 207 100 0 83 chr6 27949463 27949523 -161330031 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1184 146 3 113 chr6 27949557 27949858 -161329696 - LTR29 LTR ERV1 -218 404 137 401 232 71 0 chr6 27949840 27949939 -161329615 - MER34 LTR ERV1 -416 126 21 * 2126 124 3 3 chr6 27950033 27950332 -161329222 - AluSx SINE Alu -13 299 1 764 204 55 35 chr6 27950434 27950635 -161328919 + MER3 DNA MER1_type 1 205 -4 941 165 0 35 chr6 27950692 27950862 -161328692 + AluJb SINE Alu 134 297 -15 2190 68 24 20 chr6 27950864 27951159 -161328395 + AluSc SINE Alu 1 296 -13 1966 126 149 36 chr6 27951169 27951557 -161327997 + LTR23 LTR ERV1 1 432 -5 246 236 0 0 chr6 27951549 27951604 -161327950 - LTR29 LTR ERV1 -385 237 183 * 1712 184 23 3 chr6 27952745 27953050 -161326504 - AluJb SINE Alu -1 311 1 577 269 38 80 chr6 27953542 27953754 -161325800 + MIR SINE MIR 35 237 -25 377 373 12 28 chr6 27954201 27954456 -161325098 + MIR SINE MIR 12 262 0 31 26 0 0 chr6 27955123 27955161 -161324393 + AT_rich Low_complexity Low_complexity 1 38 0 2018 99 52 4 chr6 27955164 27955436 -161324118 - AluSc SINE Alu -24 285 1 613 65 13 0 chr6 27955564 27955641 -161323913 - MADE1 DNA Mariner 0 80 3 188 0 0 69 chr6 27955954 27955983 -161323571 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 647 116 0 0 chr6 27955983 27956069 -161323485 - LTR23 LTR ERV1 -32 405 320 183 42 0 0 chr6 27956635 27956659 -161322895 + (TG)n Simple_repeat Simple_repeat 1 24 0 1667 169 135 51 chr6 27956659 27957073 -161322481 - L1MB3 LINE L1 -16 6167 5719 262 294 272 22 chr6 27957443 27957579 -161321975 - MER91A DNA MER1_type -3 193 24 462 308 126 0 chr6 27958710 27958869 -161320685 + MIR SINE MIR 53 231 -31 978 223 28 87 chr6 27959113 27959226 -161320328 + MER46C DNA MER2_type 5 123 -215 2791 227 29 17 chr6 27959226 27959812 -161319742 - MLT1E LTR MaLR 0 593 1 978 223 28 87 chr6 27959812 27960053 -161319501 + MER46C DNA MER2_type 123 338 0 865 78 9 0 chr6 27960241 27960357 -161319197 - AluSg/x SINE Alu 0 309 193 1902 125 37 17 chr6 27960425 27960722 -161318832 - AluSx SINE Alu -9 303 1 207 105 26 0 chr6 27960747 27960785 -161318769 + T-rich Low_complexity Low_complexity 3 41 0 344 247 122 32 chr6 27960984 27961231 -161318323 - L1M3 LINE L1 -530 5804 5536 271 304 99 33 chr6 27961236 27961417 -161318137 - MIR SINE MIR 0 262 70 1734 177 0 10 chr6 27961503 27961791 -161317763 - AluJo SINE Alu -27 285 1 576 310 65 52 chr6 27961794 27962197 -161317357 - L1ME LINE L1 -393 5777 5370 936 96 8 0 chr6 27962471 27962596 -161316958 + FRAM SINE Alu 20 145 -31 2118 130 10 0 chr6 27962608 27962901 -161316653 + AluSx SINE Alu 1 296 -16 231 218 0 0 chr6 27962910 27962965 -161316589 + GA-rich Low_complexity Low_complexity 3 57 0 229 176 27 0 chr6 27963300 27963374 -161316180 + (TA)n Simple_repeat Simple_repeat 2 77 0 717 193 82 41 chr6 27963386 27963557 -161315997 - AluJo SINE Alu -37 275 98 785 168 69 58 chr6 27963737 27963888 -161315666 - AluJb SINE Alu -19 293 138 1907 157 0 10 chr6 27963888 27964188 -161315366 - AluJb SINE Alu -15 297 1 785 168 69 58 chr6 27964188 27964209 -161315345 - AluJb SINE Alu -174 138 119 201 169 56 11 chr6 27964288 27964377 -161315177 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 964 257 121 50 chr6 27964609 27965553 -161314001 - L1MEd LINE L1 -2659 3470 2460 2161 135 0 0 chr6 27965637 27965941 -161313613 - AluSx SINE Alu -8 304 1 366 287 59 0 chr6 27966113 27966214 -161313340 - L1MEd LINE L1 -5530 589 483 902 253 203 8 chr6 27966224 27966619 -161312935 - LTR33 LTR ERVL -49 472 1 218 235 176 47 chr6 27966917 27967002 -161312552 + MIR SINE MIR 30 125 -83 3098 122 63 87 chr6 27967189 27967796 -161311758 + LTR14B LTR ERVK 17 608 0 561 327 29 5 chr6 27967796 27968001 -161311553 - MIR SINE MIR -7 255 46 1780 138 11 14 chr6 27968024 27968329 -161311225 + AluSx SINE Alu 1 304 0 290 390 0 0 chr6 27968952 27969070 -161310484 + L2 LINE L2 3195 3312 -1 1601 132 25 0 chr6 27969817 27970052 -161309502 + AluSq SINE Alu 1 241 -72 1175 229 124 56 chr6 27970291 27970806 -161308748 + MER34B LTR ERV1 11 560 -5 29 60 0 0 chr6 27971112 27971162 -161308392 + AT_rich Low_complexity Low_complexity 1 50 0 1780 156 45 0 chr6 27971465 27971753 -161307801 + AluJb SINE Alu 1 301 -11 636 238 146 113 chr6 27971843 27972338 -161307216 - MLT1J LTR MaLR 0 511 1 1121 222 111 35 chr6 27972480 27972822 -161306732 - MLT1A2 LTR MaLR -1 373 6 5124 148 44 35 chr6 27972848 27973146 -161306408 - L1MC1 LINE L1 -107 6226 5932 2351 186 79 5 chr6 27973146 27973591 -161305963 + MER66A LTR ERV1 1 478 0 5124 148 44 35 chr6 27973591 27973704 -161305850 - L1MC1 LINE L1 -401 5932 5822 1661 117 98 12 chr6 27973704 27973960 -161305594 - AluSx SINE Alu 0 312 35 5124 148 44 35 chr6 27973960 27974568 -161304986 - L1MC1 LINE L1 -511 5822 5199 2284 142 62 55 chr6 27974568 27974740 -161304814 - Charlie5 DNA MER1_type -1391 1233 1064 901 142 8 15 chr6 27974740 27974874 -161304680 - FLAM_C SINE Alu 0 133 1 2284 142 62 55 chr6 27974874 27975230 -161304324 - Charlie5 DNA MER1_type -1560 1064 701 758 142 0 0 chr6 27975230 27975343 -161304211 - FLAM_C SINE Alu 0 143 31 1077 106 10 212 chr6 27975356 27975545 -161304009 - Charlie5 DNA MER1_type -1950 674 601 1783 143 25 7 chr6 27975545 27975824 -161303730 - AluJb SINE Alu -28 284 1 1077 106 10 212 chr6 27975824 27976020 -161303534 - Charlie5 DNA MER1_type -2023 601 367 31 26 0 0 chr6 27976020 27976058 -161303496 + AT_rich Low_complexity Low_complexity 1 38 0 200 321 138 0 chr6 27976487 27976596 -161302958 + MIR SINE MIR 59 182 -80 32 0 0 0 chr6 27976854 27976886 -161302668 + AT_rich Low_complexity Low_complexity 1 32 0 2038 129 3 10 chr6 27978604 27978906 -161300648 - AluSx SINE Alu -12 300 1 312 285 120 22 chr6 27978949 27979216 -161300338 - L1MC1 LINE L1 -1078 5068 4776 3106 199 79 37 chr6 27979922 27980290 -161299264 - L1ME1 LINE L1 -5 6161 5810 2083 124 24 0 chr6 27980290 27980580 -161298974 - AluSq SINE Alu -16 297 1 3106 199 79 37 chr6 27980580 27981132 -161298422 - L1ME1 LINE L1 -356 5810 5208 787 148 8 16 chr6 27981133 27981285 -161298269 - AluSg/x SINE Alu 0 310 173 1639 208 53 52 chr6 27981285 27981790 -161297764 - L1ME1 LINE L1 -945 5201 4696 2512 122 26 90 chr6 27981861 27981921 -161297633 - L1MA5A LINE L1 -10 6287 6225 192 40 0 0 chr6 27981921 27981946 -161297608 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2240 109 0 0 chr6 27981946 27982230 -161297324 - AluSx SINE Alu -28 284 1 2512 122 26 90 chr6 27982230 27982669 -161296885 - L1MA5A LINE L1 -70 6227 5819 639 260 53 40 chr6 27983008 27983235 -161296319 + MLT1J2 LTR MaLR 97 326 -124 317 242 0 0 chr6 27983716 27983778 -161295776 + L2 LINE L2 3252 3313 0 1737 140 7 42 chr6 27983914 27984222 -161295332 - AluJb SINE Alu -14 298 2 7483 88 4 2 chr6 27984451 27985418 -161294136 + LTR5 LTR ERVK 1 969 0 22 35 0 0 chr6 27985604 27985633 -161293921 + AT_rich Low_complexity Low_complexity 1 29 0 199 313 109 16 chr6 27985738 27985866 -161293688 + MIR3 SINE MIR 68 207 -1 1872 156 7 0 chr6 27986303 27986585 -161292969 - AluSx SINE Alu -28 284 1 2506 70 0 0 chr6 27987088 27987390 -161292164 + AluY SINE Alu 1 302 -9 2120 110 0 0 chr6 27987910 27988192 -161291362 + AluSg SINE Alu 28 309 -1 21 0 0 0 chr6 27988366 27988387 -161291167 + AT_rich Low_complexity Low_complexity 1 21 0 835 154 0 39 chr6 27989049 27989179 -161290375 - FLAM_C SINE Alu -4 129 5 228 362 46 65 chr6 27989897 27990220 -161289334 + L2 LINE L2 988 1304 -2010 313 367 46 0 chr6 27990224 27990333 -161289221 - L2 LINE L2 -8 3305 3192 214 307 27 47 chr6 27990341 27990491 -161289063 + L2 LINE L2 1314 1460 -1854 597 83 73 0 chr6 27990505 27990601 -161288953 - L1MA6 LINE L1 0 6300 6198 341 269 74 7 chr6 27990678 27990827 -161288727 - LTR33 LTR ERVL -8 513 355 550 268 297 4 chr6 27990870 27991146 -161288408 + LTR50 LTR ERVL 101 457 -338 382 231 225 0 chr6 27991158 27991340 -161288214 + LTR50 LTR ERVL 573 795 0 * 459 296 34 22 chr6 27991340 27991627 -161287927 - LTR33 LTR ERVL -164 357 17 270 339 154 9 chr6 27991802 27992035 -161287519 + L2 LINE L2 1698 1964 -1350 437 280 29 46 chr6 27992079 27992252 -161287302 - L1MCa LINE L1 -5318 872 572 255 61 0 0 chr6 27992290 27992323 -161287231 + (TCC)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr6 27992343 27992376 -161287178 + (TCC)n Simple_repeat Simple_repeat 2 34 0 201 74 0 0 chr6 27992396 27992423 -161287131 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1018 239 60 12 chr6 27992494 27992745 -161286809 - L1MCa LINE L1 -5483 562 300 253 346 81 0 chr6 27992823 27992959 -161286595 + L2 LINE L2 2013 2159 -1155 296 351 185 0 chr6 27993010 27993232 -161286322 + L2 LINE L2 2421 2683 -631 2207 120 0 0 chr6 27994093 27994392 -161285162 - AluSx SINE Alu -11 301 3 592 291 34 8 chr6 27994414 27994648 -161284906 + L1ME3A LINE L1 4444 4683 -1463 256 235 158 97 chr6 27994664 27994911 -161284643 + L1ME3A LINE L1 4730 4991 -1155 898 245 121 8 chr6 27994990 27995239 -161284315 + MER77 LTR ERV1 54 330 -275 421 198 59 20 chr6 27995248 27995349 -161284205 + Tigger7 DNA MER2_type 11 115 -2372 * 1217 138 67 5 chr6 27995331 27995541 -161284013 + Tigger7 DNA MER2_type 2264 2486 -1 498 265 48 48 chr6 27995551 27995650 -161283904 + MER77 LTR ERV1 355 456 -149 1606 189 65 82 chr6 27995650 27996125 -161283429 - MLT1C LTR MaLR 0 467 1 498 265 48 48 chr6 27996125 27996172 -161283382 + MER77 LTR ERV1 455 501 -104 387 279 247 0 chr6 27996172 27996330 -161283224 - L1ME LINE L1 -420 5742 5546 465 188 132 95 chr6 27996355 27996505 -161283049 + MER77 LTR ERV1 465 602 -3 258 332 88 5 chr6 27996512 27996659 -161282895 + L1ME3A LINE L1 5040 5212 -934 1499 165 34 15 chr6 27996659 27996925 -161282629 + AluJb SINE Alu 1 271 -41 258 332 88 5 chr6 27996925 27996994 -161282560 + L1ME3A LINE L1 5212 5274 -872 2058 138 23 0 chr6 27997012 27997317 -161282237 + AluSx SINE Alu 1 312 0 781 228 66 115 chr6 27997355 27997763 -161281791 + MLT1B LTR MaLR 3 390 0 675 197 14 45 chr6 27997763 27997930 -161281624 + MLT1A2 LTR MaLR 231 390 0 1458 248 47 88 chr6 27997957 27998727 -161280827 + L1ME3A LINE L1 5417 6154 -16 229 308 66 0 chr6 27999232 27999323 -161280231 + MLT1J1 LTR MaLR 2 98 -348 192 255 20 20 chr6 27999595 27999646 -161279908 + MIR3 SINE MIR 154 204 -4 1826 144 14 4 chr6 27999796 28000073 -161279481 + AluSx SINE Alu 1 280 -32 222 62 0 0 chr6 28000073 28000105 -161279449 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 235 232 105 21 chr6 28000143 28000238 -161279316 + L1MB7 LINE L1 5694 5796 -2012 1829 167 3 3 chr6 28000323 28000622 -161278932 - AluJb SINE Alu -11 301 3 1293 183 71 4 chr6 28000678 28000946 -161278608 + AluJo SINE Alu 1 286 -26 26 0 0 0 chr6 28000955 28000981 -161278573 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 28005199 28005222 -161274332 + (T)n Simple_repeat Simple_repeat 1 23 0 603 165 29 0 chr6 28005363 28005466 -161274088 + FLAM_A SINE Alu 1 106 -36 1743 152 14 7 chr6 28006279 28006568 -161272986 + AluSx SINE Alu 1 291 -21 498 216 52 15 chr6 28007916 28008050 -161271504 + L1MB7 LINE L1 6038 6176 -8 702 288 70 89 chr6 28009117 28009631 -161269923 - L2 LINE L2 0 3313 2810 589 254 0 0 chr6 28009634 28009748 -161269806 - MER81 DNA DNA 0 114 1 1038 298 111 26 chr6 28009748 28010244 -161269310 - L2 LINE L2 -513 2801 2264 1875 141 0 10 chr6 28010276 28010566 -161268988 - AluSq SINE Alu -26 287 1 476 191 114 0 chr6 28010664 28010769 -161268785 + MER90 LTR ERV1 25 141 -473 376 184 80 56 chr6 28010864 28010989 -161268565 - L1MC4a LINE L1 -1980 5828 5701 453 190 124 0 chr6 28011008 28011129 -161268425 + L2 LINE L2 2179 2314 -1000 2031 209 70 35 chr6 28012819 28013303 -161266251 + MER34 LTR ERV1 42 542 0 2131 86 28 8 chr6 28014034 28014430 -161265124 - LTR7 LTR ERV1 -2 448 1 1528 221 92 69 chr6 28014479 28014999 -161264555 - MER34 LTR ERV1 0 542 11 27 49 0 0 chr6 28015928 28015969 -161263585 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chr6 28016373 28016405 -161263149 + (TA)n Simple_repeat Simple_repeat 2 34 0 865 159 38 0 chr6 28017726 28017883 -161261671 + FRAM SINE Alu 1 160 -16 1379 144 26 96 chr6 28019214 28019526 -161260028 + AluSg SINE Alu 4 293 -17 394 229 83 62 chr6 28019531 28019874 -161259680 - LTR48 LTR ERV1 -119 623 163 336 330 0 0 chr6 28019868 28019962 -161259592 - MER34 LTR ERV1 -448 94 1 * 2142 164 83 20 chr6 28020054 28020566 -161258988 + MER39B LTR ERV1 59 647 -6 2249 93 10 7 chr6 28020816 28021118 -161258436 + AluSq SINE Alu 1 303 -10 649 235 151 47 chr6 28021578 28021876 -161257678 - L2 LINE L2 -2 3311 2983 618 233 79 5 chr6 28022470 28022564 -161256990 + MER33 DNA MER1_type 9 95 -2490 2535 171 42 2 chr6 28022564 28022974 -161256580 - MSTB LTR MaLR 0 426 1 618 233 79 5 chr6 28022974 28023081 -161256473 + MER33 DNA MER1_type 95 225 -99 905 192 145 5 chr6 28023225 28023439 -161256115 - MSTC LTR MaLR -3 425 182 2050 164 154 39 chr6 28023439 28023952 -161255602 + LTR49 LTR ERV1 1 572 -23 1247 224 61 71 chr6 28023980 28024051 -161255503 + L1M4 LINE L1 2117 2187 -3959 2218 105 3 0 chr6 28024051 28024346 -161255208 + AluSq SINE Alu 1 296 -17 1247 224 61 71 chr6 28024346 28024480 -161255074 + L1M4 LINE L1 2187 2321 -3825 3421 181 45 14 chr6 28024480 28025131 -161254423 + LTR51 LTR ERV1 1 671 0 1247 224 61 71 chr6 28025131 28025401 -161254153 + L1M4 LINE L1 2321 2588 -3558 361 209 0 116 chr6 28025450 28025542 -161254012 + MIR SINE MIR 131 205 -57 2425 76 3 0 chr6 28025542 28025844 -161253710 + AluSp SINE Alu 1 303 -10 361 209 0 116 chr6 28025844 28025880 -161253674 + MIR SINE MIR 205 244 -18 313 324 125 5 chr6 28025939 28026155 -161253399 + L1ME LINE L1 5309 5550 -571 953 212 45 38 chr6 28026547 28026625 -161252929 - MER39 LTR ERV1 0 707 631 2172 105 0 3 chr6 28026625 28026921 -161252633 + AluSc SINE Alu 1 295 -14 953 212 45 38 chr6 28026921 28027130 -161252424 - MER39 LTR ERV1 -76 631 418 181 246 29 101 chr6 28027149 28027218 -161252336 + MIR3 SINE MIR 4 67 -141 216 214 0 0 chr6 28027275 28027331 -161252223 + A-rich Low_complexity Low_complexity 1 56 0 3642 118 72 0 chr6 28027332 28027849 -161251705 + MER41C LTR ERV1 1 554 0 2489 58 0 10 chr6 28028008 28028320 -161251234 - AluY SINE Alu -2 309 1 1682 155 7 0 chr6 28029701 28029985 -161249569 - AluSx SINE Alu -22 290 5 293 284 40 0 chr6 28030255 28030329 -161249225 + MER5A DNA MER1_type 30 106 -83 24 0 0 0 chr6 28031663 28031687 -161247867 + AT_rich Low_complexity Low_complexity 1 24 0 1497 223 77 6 chr6 28031737 28032218 -161247336 - MER69 DNA AcHobo -2 2524 2010 1120 296 80 53 chr6 28032216 28032401 -161247153 - MER69 DNA AcHobo -658 568 390 * 2635 43 0 0 chr6 28032401 28032701 -161246853 - AluY SINE Alu -11 300 1 1120 296 80 53 chr6 28032701 28033066 -161246488 - MER69 DNA AcHobo -836 390 3 262 424 5 0 chr6 28033424 28033620 -161245934 - MIR SINE MIR -6 256 60 3870 138 33 71 chr6 28033839 28034557 -161244997 + LTR8 LTR ERV1 1 691 0 1174 188 106 3 chr6 28034697 28034989 -161244565 + MER33 DNA MER1_type 1 322 -2 2268 106 0 10 chr6 28035322 28035634 -161243920 + AluSg SINE Alu 1 309 -1 23 54 0 0 chr6 28035768 28035805 -161243749 + AT_rich Low_complexity Low_complexity 1 37 0 234 0 0 0 chr6 28035806 28035832 -161243722 + (CA)n Simple_repeat Simple_repeat 1 26 0 403 246 49 63 chr6 28035862 28036004 -161243550 + MIR SINE MIR 117 256 -6 2082 116 3 7 chr6 28036245 28036560 -161242994 + AluSx SINE Alu 2 312 0 281 216 39 10 chr6 28036675 28036777 -161242777 + Tigger8 DNA MER2_type 186 290 -376 866 256 46 100 chr6 28036810 28037329 -161242225 + MER34 LTR ERV1 1 491 -51 532 270 63 5 chr6 28037380 28037602 -161241952 + Tigger8 DNA MER2_type 321 555 -111 1791 144 20 13 chr6 28037872 28038177 -161241377 - AluSx SINE Alu -5 307 1 2130 95 21 0 chr6 28038177 28038460 -161241094 - AluSg1 SINE Alu -19 290 1 1540 106 81 93 chr6 28038688 28038871 -161240683 - Tigger7 DNA MER2_type -38 2449 2270 2184 93 0 0 chr6 28038871 28039161 -161240393 + AluSx SINE Alu 10 299 -13 1540 106 81 93 chr6 28039161 28039298 -161240256 - Tigger7 DNA MER2_type -217 2270 2133 21 0 0 0 chr6 28042573 28042594 -161236960 + AT_rich Low_complexity Low_complexity 1 21 0 1721 134 80 0 chr6 28043470 28043746 -161235808 + AluSx SINE Alu 1 298 -14 1947 97 0 12 chr6 28043772 28044029 -161235525 + AluSq SINE Alu 1 254 -59 516 130 0 0 chr6 28044058 28044135 -161235419 + AluS SINE Alu 225 301 -8 354 306 25 0 chr6 28044507 28044628 -161234926 + LTR37B LTR ERV1 1 124 -344 1283 205 37 10 chr6 28044639 28044937 -161234617 - MER33 DNA MER1_type -16 308 3 512 256 30 67 chr6 28045073 28045342 -161234212 + LTR37B LTR ERV1 210 468 0 2325 102 0 0 chr6 28045552 28045845 -161233709 + AluSg SINE Alu 1 293 -17 847 173 0 8 chr6 28046233 28046366 -161233188 - FLAM_C SINE Alu -1 132 1 867 182 6 30 chr6 28046862 28047027 -161232527 + FRAM SINE Alu 1 157 -19 32 0 0 0 chr6 28047030 28047062 -161232492 + AT_rich Low_complexity Low_complexity 1 32 0 369 312 34 73 chr6 28047168 28047402 -161232152 + MARNA DNA Mariner 277 501 -85 346 223 101 40 chr6 28047750 28047898 -161231656 - Charlie1 DNA MER1_type -1 2760 2604 219 214 31 31 chr6 28047928 28048026 -161231528 + (TA)n Simple_repeat Simple_repeat 2 99 0 304 329 180 0 chr6 28048145 28048352 -161231202 + MIR SINE MIR 1 243 -19 787 249 33 57 chr6 28049130 28049375 -161230179 + MIR SINE MIR 2 240 -22 21 36 0 0 chr6 28049375 28049403 -161230151 + AT_rich Low_complexity Low_complexity 1 28 0 1395 161 9 0 chr6 28049986 28050209 -161229345 - AluSx SINE Alu -87 225 1 204 350 58 0 chr6 28050410 28050513 -161229041 - L2 LINE L2 0 3313 3205 280 79 0 0 chr6 28050691 28050729 -161228825 + U2 snRNA snRNA 1 38 -150 2340 80 3 0 chr6 28051718 28052019 -161227535 + AluY SINE Alu 1 302 -9 3485 129 83 45 chr6 28052170 28052264 -161227290 - MER39B LTR ERV1 0 653 564 372 22 0 0 chr6 28052264 28052309 -161227245 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2075 82 34 0 chr6 28052309 28052577 -161226977 - AluSc SINE Alu -32 277 1 3485 129 83 45 chr6 28052577 28053110 -161226444 - MER39B LTR ERV1 -88 565 1 792 184 0 0 chr6 28053186 28053311 -161226243 - FRAM SINE Alu -8 168 44 232 191 128 0 chr6 28053311 28053358 -161226196 + MER20 DNA MER1_type 75 127 -92 2134 172 71 19 chr6 28053390 28053814 -161225740 + MER61-int LTR ERV1 2357 2802 -2415 619 195 76 0 chr6 28053851 28053969 -161225585 + MER52C LTR ERV1 1152 1278 0 908 186 82 0 chr6 28054697 28054880 -161224674 - MER3 DNA MER1_type 0 209 12 795 227 16 27 chr6 28055041 28055226 -161224328 - MLT1A2 LTR MaLR -4 370 188 1304 196 68 7 chr6 28055290 28055570 -161223984 - AluJo SINE Alu -15 297 1 2112 120 31 0 chr6 28055578 28055869 -161223685 - AluSx SINE Alu -12 300 1 806 183 18 24 chr6 28055873 28056037 -161223517 - MLT1A2 LTR MaLR -211 163 1 1551 194 97 16 chr6 28056042 28056424 -161223130 - MLT1C LTR MaLR 0 467 55 3175 166 71 24 chr6 28056479 28057185 -161222369 + LTR1 LTR ERV1 18 785 0 283 83 50 100 chr6 28057185 28057245 -161222309 - MLT1C LTR MaLR -407 60 4 1670 165 3 16 chr6 28057838 28058141 -161221413 - AluJb SINE Alu -13 299 1 1951 144 0 3 chr6 28058249 28058548 -161221006 - AluSx SINE Alu -14 298 1 252 0 0 0 chr6 28058790 28058818 -161220736 + (TG)n Simple_repeat Simple_repeat 2 29 0 349 215 11 33 chr6 28059002 28059102 -161220452 - L1P3 LINE L1 -576 5545 5456 387 0 0 0 chr6 28059185 28059228 -161220326 + (TA)n Simple_repeat Simple_repeat 2 44 0 2107 101 28 3 chr6 28059229 28059516 -161220038 - AluSg SINE Alu -16 294 1 1476 194 88 29 chr6 28060279 28060630 -161218924 + LTR2B LTR ERV1 32 403 -87 1704 60 0 0 chr6 28060630 28060847 -161218707 + Harlequin LTR ERV1 27 243 -6653 * 39060 65 11 15 chr6 28060842 28066532 -161213022 + Harlequin LTR ERV1 1198 6896 0 1861 187 49 49 chr6 28066532 28066981 -161212573 + LTR2 LTR ERV1 1 449 0 1953 127 27 23 chr6 28067329 28067629 -161211925 - AluSx SINE Alu -11 301 1 1358 224 152 8 chr6 28067779 28068180 -161211374 - MLT1C LTR MaLR -6 461 3 1613 175 17 21 chr6 28068349 28068640 -161210914 - AluJo SINE Alu -22 290 1 203 297 14 0 chr6 28069043 28069117 -161210437 + L2 LINE L2 1914 1988 -1326 1073 216 24 72 chr6 28069297 28069472 -161210082 + L1MB7 LINE L1 4622 4775 -1371 2097 108 21 0 chr6 28069472 28069759 -161209795 + AluSx SINE Alu 3 295 -17 1073 216 24 72 chr6 28069759 28069917 -161209637 + L1MB7 LINE L1 4775 4939 -1207 2330 160 108 61 chr6 28069952 28070546 -161209008 + L1MB7 LINE L1 5501 6122 -62 1420 90 0 16 chr6 28070546 28070720 -161208834 - AluSp SINE Alu -6 307 135 2179 115 0 0 chr6 28070720 28071015 -161208539 - AluSq SINE Alu -18 295 1 1420 90 0 16 chr6 28071015 28071029 -161208525 - AluSp SINE Alu -178 135 122 218 278 125 0 chr6 28071315 28071387 -161208167 + MER5B DNA MER1_type 1 81 -97 309 146 109 73 chr6 28071482 28071592 -161207962 - MER51D LTR ERV1 -44 613 500 317 253 42 11 chr6 28072067 28072162 -161207392 + MER5B DNA MER1_type 80 177 -1 219 268 0 14 chr6 28073773 28073844 -161205710 - MIR SINE MIR -80 182 113 338 302 105 20 chr6 28073985 28074263 -161205291 - L2 LINE L2 0 3313 2954 701 182 74 14 chr6 28074358 28074506 -161205048 - MER20 DNA MER1_type -56 163 7 1140 269 42 62 chr6 28074629 28074879 -161204675 - L2 LINE L2 -580 2734 2497 1576 160 56 7 chr6 28074879 28075148 -161204406 + AluJo SINE Alu 1 282 -30 1140 269 42 62 chr6 28075148 28075377 -161204177 - L2 LINE L2 -817 2497 2265 2265 123 3 0 chr6 28075382 28075692 -161203862 + AluSx SINE Alu 1 311 -1 2180 112 10 0 chr6 28077117 28077422 -161202132 + AluSg SINE Alu 1 308 -2 238 232 0 58 chr6 28077584 28077653 -161201901 + MER116 DNA Mariner 2 66 -14 218 291 86 43 chr6 28078629 28078746 -161200808 - L2 LINE L2 -8 3264 3143 256 264 236 28 chr6 28079144 28079288 -161200266 - L2 LINE L2 -557 2757 2584 396 324 6 62 chr6 28080000 28080179 -161199375 + MER91B DNA MER1_type 12 180 -10 561 294 24 57 chr6 28080300 28080428 -161199126 - MIR SINE MIR -21 241 121 2540 75 0 0 chr6 28080428 28080736 -161198818 + AluY SINE Alu 1 308 -3 561 294 24 57 chr6 28080736 28080818 -161198736 - MIR SINE MIR -141 121 38 2301 70 35 7 chr6 28081368 28081654 -161197900 - AluSg SINE Alu -16 294 1 433 188 59 0 chr6 28083584 28083669 -161195885 + L1PB4 LINE L1 6055 6144 -12 332 207 122 98 chr6 28083689 28083853 -161195701 - MIR SINE MIR -5 257 90 2314 103 0 10 chr6 28084105 28084406 -161195148 - AluSx SINE Alu -14 298 1 1473 154 68 11 chr6 28084420 28084699 -161194855 - AluJo SINE Alu -17 295 1 24 0 0 0 chr6 28084824 28084848 -161194706 + AT_rich Low_complexity Low_complexity 1 24 0 2293 94 3 0 chr6 28085033 28085331 -161194223 - AluSg SINE Alu -11 299 1 1508 173 0 23 chr6 28085624 28085761 -161193793 + AluJb SINE Alu 1 131 -181 2465 68 13 0 chr6 28085761 28086068 -161193486 + AluSp SINE Alu 1 311 -2 1508 173 0 23 chr6 28086068 28086196 -161193358 + AluJb SINE Alu 131 260 -52 25 51 0 0 chr6 28086196 28086235 -161193319 + AT_rich Low_complexity Low_complexity 1 39 0 417 39 0 0 chr6 28086887 28086938 -161192616 + (CA)n Simple_repeat Simple_repeat 1 51 0 824 148 0 25 chr6 28087029 28087151 -161192403 - FLAM_C SINE Alu -16 127 9 21 0 0 0 chr6 28088761 28088782 -161190772 + AT_rich Low_complexity Low_complexity 1 21 0 1554 109 134 18 chr6 28089745 28090021 -161189533 + AluSg SINE Alu 2 309 -1 2046 95 7 0 chr6 28090217 28090490 -161189064 + AluSg1 SINE Alu 3 277 -32 180 0 0 0 chr6 28090490 28090510 -161189044 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 249 280 37 28 chr6 28091539 28091591 -161187963 - Charlie4 DNA MER1_type -1837 124 74 207 0 0 0 chr6 28091591 28091614 -161187940 + (CAA)n Simple_repeat Simple_repeat 2 24 0 249 280 37 28 chr6 28091614 28091668 -161187886 - Charlie4 DNA MER1_type -1887 74 17 824 176 152 80 chr6 28091948 28092120 -161187434 - AluJo SINE Alu -1 311 114 1656 154 37 74 chr6 28092120 28092470 -161187084 - MER1B DNA MER1_type 0 337 1 824 176 152 80 chr6 28092470 28092547 -161187007 - AluJo SINE Alu -198 114 44 26 0 0 0 chr6 28093771 28093797 -161185757 + AT_rich Low_complexity Low_complexity 1 26 0 861 178 235 9 chr6 28094248 28094461 -161185093 + AluJo SINE Alu 1 261 -51 2156 110 3 3 chr6 28094756 28095057 -161184497 - AluSq SINE Alu -11 302 2 1732 153 28 7 chr6 28095400 28095688 -161183866 + AluJo SINE Alu 1 294 -18 278 306 75 20 chr6 28095700 28095847 -161183707 + MER112 DNA MER1_type 99 253 -7 320 219 233 41 chr6 28096144 28096290 -161183264 - MIR SINE MIR 0 262 89 838 173 0 0 chr6 28096316 28096449 -161183105 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr6 28096566 28096596 -161182958 + AT_rich Low_complexity Low_complexity 1 30 0 264 275 107 60 chr6 28097882 28098180 -161181374 + MLT1J LTR MaLR 200 511 0 237 336 98 25 chr6 28098204 28098326 -161181228 + L2 LINE L2 3183 3313 0 243 187 152 123 chr6 28098423 28098594 -161180960 - L1ME LINE L1 -566 5555 5380 262 250 47 70 chr6 28098719 28098847 -161180707 + MIR3 SINE MIR 15 139 -69 919 231 76 43 chr6 28098863 28099305 -161180249 - MLT1B LTR MaLR 0 390 4 731 217 115 33 chr6 28099682 28099986 -161179568 + L1ME4a LINE L1 5513 5841 -280 222 156 16 47 chr6 28100019 28100083 -161179471 + (TA)n Simple_repeat Simple_repeat 1 62 0 789 278 24 40 chr6 28100443 28100691 -161178863 - MIR SINE MIR -1 261 18 29 28 0 0 chr6 28100994 28101030 -161178524 + AT_rich Low_complexity Low_complexity 1 36 0 226 313 12 0 chr6 28101188 28101271 -161178283 + A-rich Low_complexity Low_complexity 3 86 0 1708 155 3 52 chr6 28101631 28101940 -161177614 + AluJb SINE Alu 1 294 -18 609 287 25 30 chr6 28102535 28102737 -161176817 - MIR SINE MIR -51 211 11 224 270 68 0 chr6 28102787 28102861 -161176693 - MIR SINE MIR -51 211 133 22 35 0 0 chr6 28105091 28105120 -161174434 + AT_rich Low_complexity Low_complexity 1 29 0 2032 100 50 0 chr6 28105403 28105683 -161173871 + AluSx SINE Alu 3 296 -16 2395 68 7 3 chr6 28106992 28107302 -161172252 + AluSp SINE Alu 1 311 -2 491 253 108 82 chr6 28108149 28108564 -161170990 - MER101 LTR ERV1 -36 438 13 1595 130 14 42 chr6 28110545 28110830 -161168724 + AluSx SINE Alu 15 291 -21 1928 93 87 14 chr6 28110970 28111259 -161168295 - AluSq SINE Alu -3 310 1 474 234 48 35 chr6 28112038 28112183 -161167371 - MIR SINE MIR -14 248 102 2029 110 0 38 chr6 28112941 28113233 -161166321 + AluSx SINE Alu 11 291 -21 915 112 0 8 chr6 28113235 28113360 -161166194 + AluSc SINE Alu 104 227 -82 24 0 0 0 chr6 28114173 28114197 -161165357 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 28114239 28114266 -161165288 + AT_rich Low_complexity Low_complexity 1 27 0 1820 145 15 0 chr6 28114533 28114802 -161164752 - AluSx SINE Alu -39 273 1 1370 169 65 125 chr6 28115120 28115535 -161164019 - MLT1B LTR MaLR 0 390 1 1997 188 38 40 chr6 28115535 28115598 -161163956 - MLT1B-int LTR MaLR 0 1735 1673 2320 84 0 3 chr6 28115598 28115896 -161163658 + AluY SINE Alu 1 297 -14 1997 188 38 40 chr6 28115896 28116253 -161163301 - MLT1B-int LTR MaLR -62 1673 1316 1449 138 16 103 chr6 28116477 28116789 -161162765 + AluY SINE Alu 11 295 -16 1884 226 16 53 chr6 28116918 28117069 -161162485 - MLT1B-int LTR MaLR -486 885 730 1778 171 3 10 chr6 28117069 28117378 -161162176 + AluJb SINE Alu 1 307 -5 1884 226 16 53 chr6 28117378 28117773 -161161781 - MLT1B-int LTR MaLR -641 730 268 1975 124 4 0 chr6 28117808 28118082 -161161472 - AluSg SINE Alu -35 275 1 1225 179 56 15 chr6 28118094 28118362 -161161192 - MLT1B-int LTR MaLR -1090 281 3 782 185 14 7 chr6 28118363 28118509 -161161045 - MLT1B LTR MaLR -4 386 240 717 316 101 37 chr6 28118660 28119302 -161160252 + L2 LINE L2 2109 3021 -251 333 0 0 0 chr6 28119413 28119450 -161160104 + (TG)n Simple_repeat Simple_repeat 2 38 0 2160 112 0 16 chr6 28119815 28120120 -161159434 - AluSc SINE Alu -9 300 1 1031 101 0 22 chr6 28120120 28120259 -161159295 - AluSq/x SINE Alu -177 136 1 2067 127 17 0 chr6 28120493 28120784 -161158770 + AluSx SINE Alu 4 299 -13 614 114 0 0 chr6 28121018 28121097 -161158457 + MADE1 DNA Mariner 2 80 0 384 294 55 7 chr6 28121275 28121421 -161158133 + L2 LINE L2 3156 3308 -5 615 92 0 0 chr6 28121878 28121965 -161157589 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1948 125 4 4 chr6 28121965 28122244 -161157310 - AluSx SINE Alu -33 279 1 754 163 198 6 chr6 28122590 28122762 -161156792 - MER3 DNA MER1_type -4 205 1 519 214 125 18 chr6 28122844 28122953 -161156601 - MER53 DNA DNA -3 186 51 510 17 0 0 chr6 28122953 28123012 -161156542 + (TA)n Simple_repeat Simple_repeat 2 60 0 519 214 125 18 chr6 28123012 28123070 -161156484 - MER53 DNA DNA -138 51 1 789 241 97 4 chr6 28123662 28123919 -161155635 - L1MC4a LINE L1 -1840 5968 5688 285 304 125 0 chr6 28123992 28124114 -161155440 + MIR SINE MIR 48 187 -61 25 31 0 0 chr6 28124154 28124186 -161155368 + AT_rich Low_complexity Low_complexity 1 32 0 284 235 0 102 chr6 28124531 28124629 -161154925 + L2 LINE L2 3224 3311 -2 1537 191 10 7 chr6 28124756 28125049 -161154505 + AluJb SINE Alu 3 296 -16 198 0 0 0 chr6 28125093 28125115 -161154439 + (CA)n Simple_repeat Simple_repeat 2 23 0 385 277 107 23 chr6 28125141 28125318 -161154236 + MIR SINE MIR 20 211 -51 566 259 61 14 chr6 28126065 28126212 -161153342 - MER63 DNA MER1_type -55 781 2 896 231 103 30 chr6 28127652 28127979 -161151575 - MLT1F1 LTR MaLR -204 363 1 792 246 131 46 chr6 28128166 28128600 -161150954 + LTR33A LTR ERVL 19 489 -34 302 245 71 10 chr6 28128764 28128862 -161150692 + MIR3 SINE MIR 104 207 -1 1009 231 0 5 chr6 28129174 28129373 -161150181 + AluJb SINE Alu 85 282 -30 386 229 174 0 chr6 28129500 28129644 -161149910 + MIR SINE MIR 78 246 -16 2073 131 0 14 chr6 28129713 28130010 -161149544 - AluSx SINE Alu -19 293 1 1711 159 182 40 chr6 28130051 28130447 -161149107 - LTR47A LTR ERVL 0 452 1 180 0 0 0 chr6 28130486 28130506 -161149048 + (A)n Simple_repeat Simple_repeat 1 20 0 2457 55 0 0 chr6 28130735 28131027 -161148527 - AluY SINE Alu -19 292 1 2567 33 0 20 chr6 28131037 28131392 -161148162 - AluY SINE Alu 0 311 1 301 222 62 12 chr6 28131511 28131592 -161147962 - MIR SINE MIR -25 237 153 419 274 19 7 chr6 28131622 28131844 -161147710 - MLT1I LTR MaLR -36 373 105 265 313 70 17 chr6 28131983 28132098 -161147456 - MIR SINE MIR -108 154 34 1839 225 71 52 chr6 28132104 28132623 -161146931 + MLT1F LTR MaLR 3 531 -11 186 209 0 0 chr6 28133091 28133134 -161146420 + G-rich Low_complexity Low_complexity 4 46 0 261 374 11 0 chr6 28133134 28133225 -161146329 - MLT1G LTR MaLR -288 302 211 290 272 75 47 chr6 28133279 28133492 -161146062 + L1ME3A LINE L1 5744 5962 -208 2042 131 23 7 chr6 28133668 28133973 -161145581 - AluSx SINE Alu -2 310 1 2640 40 0 0 chr6 28134146 28134449 -161145105 - AluY SINE Alu -5 306 4 1943 241 79 31 chr6 28134499 28135148 -161144406 - L1MC4a LINE L1 -21 7787 7096 2527 50 0 0 chr6 28135148 28135447 -161144107 + AluY SINE Alu 1 299 -12 1943 241 79 31 chr6 28135447 28135547 -161144007 - L1MC4a LINE L1 -712 7096 7002 1054 168 6 11 chr6 28135569 28135748 -161143806 - AluJo SINE Alu -15 297 120 2098 215 31 103 chr6 28135774 28136014 -161143540 - L1MC4a LINE L1 -206 5915 6379 2273 118 0 0 chr6 28136014 28136318 -161143236 - AluSx SINE Alu -8 304 1 2098 215 31 103 chr6 28136318 28137001 -161142553 - L1MC4a LINE L1 259 6380 5650 324 256 23 30 chr6 28137511 28137644 -161141910 + MER112 DNA MER1_type 123 254 -6 250 381 68 6 chr6 28137649 28137825 -161141729 + MIR SINE MIR 19 205 -57 181 364 16 23 chr6 28138261 28138390 -161141164 - MER5A DNA MER1_type -5 184 57 2169 109 0 13 chr6 28138402 28138704 -161140850 + AluSq SINE Alu 11 308 -5 1216 154 145 0 chr6 28138862 28138973 -161140581 - AluSx SINE Alu -44 268 174 338 0 24 0 chr6 28138973 28139015 -161140539 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1216 154 145 0 chr6 28139015 28139137 -161140417 - AluSx SINE Alu -138 174 1 672 133 0 19 chr6 28139153 28139258 -161140296 + AluSg/x SINE Alu 207 309 0 2448 63 0 0 chr6 28139907 28140206 -161139348 - AluY SINE Alu -10 301 3 238 174 89 15 chr6 28142463 28142531 -161137023 - AluS SINE Alu -15 287 228 261 0 0 0 chr6 28144464 28144493 -161135061 + (T)n Simple_repeat Simple_repeat 1 29 0 382 274 17 69 chr6 28145408 28145583 -161133971 + L1MEd LINE L1 537 702 -5417 607 157 157 9 chr6 28145641 28145756 -161133798 + FLAM_C SINE Alu 2 133 0 2244 98 3 10 chr6 28145807 28146104 -161133450 + AluSg SINE Alu 1 295 -15 2258 118 0 0 chr6 28146146 28146452 -161133102 + AluSq SINE Alu 1 306 -7 297 235 41 78 chr6 28146477 28146677 -161132877 + L1MEd LINE L1 859 1086 -5069 1847 175 0 7 chr6 28146709 28147017 -161132537 + AluJb SINE Alu 1 306 -6 27 29 0 0 chr6 28147152 28147186 -161132368 + AT_rich Low_complexity Low_complexity 1 34 0 1628 184 20 7 chr6 28147755 28148059 -161131495 - AluSx SINE Alu -4 308 1 332 269 82 20 chr6 28148060 28148305 -161131249 - L1M4 LINE L1 -2158 3988 3729 1104 138 0 0 chr6 28148338 28148498 -161131056 - AluSg/x SINE Alu -16 296 137 1422 246 138 10 chr6 28148594 28148992 -161130562 - MLT1F1 LTR MaLR -2 565 117 844 196 19 0 chr6 28149002 28149160 -161130394 - FRAM SINE Alu -15 161 1 287 264 36 18 chr6 28149166 28149276 -161130278 - MLT1F1 LTR MaLR -450 117 6 35 0 0 0 chr6 28149813 28149848 -161129706 + AT_rich Low_complexity Low_complexity 1 35 0 2315 110 0 3 chr6 28151913 28152221 -161127333 - AluSx SINE Alu -5 307 1 333 174 0 0 chr6 28152223 28152292 -161127262 + T-rich Low_complexity Low_complexity 1 69 0 189 0 0 0 chr6 28153094 28153115 -161126439 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 622 60 0 12 chr6 28153118 28153201 -161126353 - L1PA4 LINE L1 -3 6152 6071 2230 107 3 22 chr6 28153397 28153716 -161125838 + AluSp SINE Alu 1 313 0 21 36 0 0 chr6 28154191 28154219 -161125335 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 28154309 28154330 -161125224 + AT_rich Low_complexity Low_complexity 1 21 0 35 71 0 0 chr6 28154725 28154795 -161124759 + AT_rich Low_complexity Low_complexity 1 70 0 562 118 50 2 chr6 28154911 28155150 -161124404 + AluSg SINE Alu 1 309 -1 671 258 123 27 chr6 28155349 28155609 -161123945 + L2 LINE L2 3023 3307 -6 460 264 74 31 chr6 28155693 28155856 -161123698 + MIR SINE MIR 92 261 -1 228 135 54 0 chr6 28156784 28156821 -161122733 + LTR64 LTR ERVK 407 445 -113 463 193 34 0 chr6 28156823 28156911 -161122643 - MER5A DNA MER1_type -91 98 8 2210 68 3 10 chr6 28157424 28157718 -161121836 + AluSc SINE Alu 1 292 -17 717 161 54 27 chr6 28158088 28158237 -161121317 - ORSL DNA AcHobo 0 275 123 2453 40 24 10 chr6 28158245 28158541 -161121013 - AluY SINE Alu -11 300 1 516 314 147 19 chr6 28158562 28158912 -161120642 - L1MEd LINE L1 -1870 4259 3843 1622 183 17 10 chr6 28158912 28159271 -161120283 - AluSx SINE Alu 0 312 1 516 314 147 19 chr6 28159271 28159350 -161120204 - L1MEd LINE L1 -2286 3843 3775 985 196 12 0 chr6 28159613 28159786 -161119768 + FAM SINE Alu 1 175 0 237 312 38 13 chr6 28160235 28160392 -161119162 - L1MEd LINE L1 -3592 2537 2377 297 245 68 14 chr6 28160402 28160549 -161119005 - L1MEd LINE L1 -5187 932 778 306 290 0 0 chr6 28160661 28160730 -161118824 + L2 LINE L2 3204 3272 0 2205 107 0 46 chr6 28161230 28161557 -161117997 - AluSx SINE Alu 0 312 1 262 267 56 0 chr6 28161690 28161780 -161117774 - L1M4 LINE L1 -3748 2398 2304 252 0 0 0 chr6 28161811 28161839 -161117715 + (TTA)n Simple_repeat Simple_repeat 3 30 0 560 201 22 30 chr6 28162543 28162677 -161116877 + MER92B LTR ERV1 7 139 -497 1063 123 0 0 chr6 28162677 28162823 -161116731 + AluSc SINE Alu 1 146 -163 682 94 0 3 chr6 28162823 28162980 -161116574 - AluSc SINE Alu -108 201 2 655 203 46 33 chr6 28162981 28163041 -161116513 - MER34 LTR ERV1 -377 165 107 4373 39 17 0 chr6 28163041 28163523 -161116031 + LTR2B LTR ERV1 1 490 0 655 203 46 33 chr6 28163523 28163615 -161115939 - MER34 LTR ERV1 -435 107 11 446 244 17 26 chr6 28163623 28163738 -161115816 - L2 LINE L2 -14 3299 3186 1586 155 4 0 chr6 28164035 28164274 -161115280 + AluSx SINE Alu 9 248 -64 237 167 0 0 chr6 28164294 28164348 -161115206 + GA-rich Low_complexity Low_complexity 2 55 0 184 383 0 11 chr6 28164508 28164602 -161114952 + L2 LINE L2 2242 2334 -980 456 303 76 24 chr6 28164610 28164900 -161114654 + L1ME3A LINE L1 5643 5947 -223 355 219 208 43 chr6 28164987 28165105 -161114449 + FLAM_A SINE Alu 1 126 -176 1917 157 0 7 chr6 28165105 28165404 -161114150 - AluSx SINE Alu -15 297 1 2086 137 3 7 chr6 28165479 28165785 -161113769 - AluSx SINE Alu -7 305 1 243 410 8 0 chr6 28166792 28166914 -161112640 + MIR SINE MIR 37 159 -103 1965 118 40 20 chr6 28166921 28167225 -161112329 - AluSg SINE Alu 0 310 1 2404 81 7 0 chr6 28167225 28167532 -161112022 - AluY SINE Alu -2 309 1 2218 100 7 3 chr6 28167533 28167832 -161111722 - AluSq SINE Alu -13 300 1 25 0 0 0 chr6 28168285 28168310 -161111244 + AT_rich Low_complexity Low_complexity 1 25 0 417 108 31 0 chr6 28170380 28170445 -161109109 - MER5A DNA MER1_type -1 188 122 346 205 145 43 chr6 28170759 28170876 -161108678 - L2 LINE L2 -1 3312 3184 2023 151 0 25 chr6 28170888 28171207 -161108347 + AluSx SINE Alu 1 311 -1 2231 118 3 0 chr6 28171489 28171794 -161107760 - AluSp SINE Alu -6 307 2 244 132 0 0 chr6 28171885 28171923 -161107631 - AluSx SINE Alu -7 295 258 1179 139 6 0 chr6 28171926 28172099 -161107455 - AluSx SINE Alu -138 174 1 274 312 80 37 chr6 28172328 28172652 -161106902 - MLT1J LTR MaLR -74 376 64 1456 160 11 18 chr6 28173508 28173783 -161105771 + AluJb SINE Alu 1 273 -39 2436 74 7 7 chr6 28174666 28174975 -161104579 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 28175642 28175663 -161103891 + AT_rich Low_complexity Low_complexity 1 21 0 502 250 109 77 chr6 28175812 28176043 -161103511 + Charlie4a DNA MER1_type 5 250 -1711 2389 87 0 3 chr6 28176043 28176353 -161103201 + AluY SINE Alu 1 309 -2 502 250 109 77 chr6 28176353 28176433 -161103121 + Charlie4a DNA MER1_type 250 326 -182 1434 164 87 22 chr6 28176442 28176717 -161102837 + AluSx SINE Alu 13 305 -7 477 203 16 0 chr6 28176720 28176843 -161102711 + Charlie4a DNA MER1_type 315 439 -69 1948 142 7 0 chr6 28176844 28177146 -161102408 + AluSx SINE Alu 2 305 0 1973 129 11 0 chr6 28177153 28177458 -161102096 + AluSx SINE Alu 1 308 0 2067 124 0 23 chr6 28177914 28178221 -161101333 + AluSg SINE Alu 1 300 -10 246 328 47 16 chr6 28178369 28178497 -161101057 - MIR3 SINE MIR -76 132 1 23 33 0 0 chr6 28179292 28179322 -161100232 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr6 28179430 28179460 -161100094 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr6 28179949 28179977 -161099577 + AT_rich Low_complexity Low_complexity 1 28 0 368 261 23 102 chr6 28181013 28181121 -161098433 + FRAM SINE Alu 1 91 -211 2040 128 7 0 chr6 28181121 28181417 -161098137 - AluSx SINE Alu -14 298 1 368 261 23 102 chr6 28181417 28181484 -161098070 + FRAM SINE Alu 91 162 -4 180 0 0 0 chr6 28183102 28183122 -161096432 + (A)n Simple_repeat Simple_repeat 1 20 0 1979 122 7 16 chr6 28183549 28183852 -161095702 - AluSg SINE Alu -10 300 1 31 68 0 0 chr6 28186030 28186089 -161093465 + AT_rich Low_complexity Low_complexity 1 59 0 2288 104 0 0 chr6 28186145 28186443 -161093111 - AluSp SINE Alu -15 298 1 715 280 48 72 chr6 28186798 28187313 -161092241 + MLT1D LTR MaLR 3 505 0 32 67 0 0 chr6 28187961 28188021 -161091533 + AT_rich Low_complexity Low_complexity 1 60 0 2891 161 67 13 chr6 28188172 28188712 -161090842 - MER39B LTR ERV1 -84 569 1 25 31 0 0 chr6 28188890 28188922 -161090632 + AT_rich Low_complexity Low_complexity 1 32 0 2229 104 10 0 chr6 28188998 28189295 -161090259 - AluSp SINE Alu -12 301 2 833 199 120 61 chr6 28190771 28191097 -161088457 + LOR1b LTR ERV1 3 347 -114 267 225 169 0 chr6 28191096 28191167 -161088387 + LTR51 LTR ERV1 468 550 -121 * 1861 153 13 7 chr6 28191691 28191992 -161087562 + AluSx SINE Alu 1 303 -9 502 345 38 13 chr6 28192224 28192540 -161087014 - L2 LINE L2 -26 3287 2964 515 253 38 21 chr6 28192774 28192960 -161086594 + LTR43 LTR ERV1 133 321 -281 242 221 70 89 chr6 28192989 28193147 -161086407 + LTR58 LTR ERV1 513 667 -12 1486 264 37 73 chr6 28193181 28193319 -161086235 - L2 LINE L2 -467 2847 2706 222 37 0 0 chr6 28193319 28193346 -161086208 + (CA)n Simple_repeat Simple_repeat 2 28 0 1486 264 37 73 chr6 28193346 28193358 -161086196 - L2 LINE L2 -608 2706 2695 2285 103 0 0 chr6 28193358 28193658 -161085896 - AluY SINE Alu -11 300 1 1486 264 37 73 chr6 28193658 28194233 -161085321 - L2 LINE L2 -619 2695 2147 805 291 151 29 chr6 28194938 28195209 -161084345 + L2 LINE L2 2452 2689 -624 2286 76 0 3 chr6 28195209 28195510 -161084044 + AluY SINE Alu 1 300 -11 805 291 151 29 chr6 28195510 28195811 -161083743 + L2 LINE L2 2689 3086 -227 973 115 0 0 chr6 28195928 28196058 -161083496 + AluSq/x SINE Alu 1 130 -183 1553 123 5 0 chr6 28196062 28196274 -161083280 + AluSx SINE Alu 1 213 -99 2180 118 3 16 chr6 28196665 28196979 -161082575 + AluSx SINE Alu 1 310 -2 215 289 72 0 chr6 28197645 28197728 -161081826 + L2 LINE L2 3225 3313 0 2907 13 0 0 chr6 28197790 28198100 -161081454 - AluY SINE Alu -1 310 1 324 0 0 0 chr6 28198263 28198299 -161081255 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 280 105 0 chr6 28198351 28198494 -161081060 - L1ME4a LINE L1 -254 5867 5710 1398 168 137 19 chr6 28198764 28199086 -161080468 + MLT1B LTR MaLR 24 383 -7 682 211 84 80 chr6 28199211 28199310 -161080244 - MER39 LTR ERV1 0 707 610 2317 72 0 34 chr6 28199310 28199631 -161079923 - AluY SINE Alu -1 310 1 682 211 84 80 chr6 28199631 28199830 -161079724 - MER39 LTR ERV1 -97 610 408 275 305 63 0 chr6 28199873 28199968 -161079586 - MER34 LTR ERV1 -428 114 14 2011 115 3 7 chr6 28200077 28200364 -161079190 - AluSq SINE Alu -27 286 1 2283 92 0 16 chr6 28200381 28200695 -161078859 - AluSg SINE Alu 0 310 2 868 242 29 12 chr6 28200843 28201083 -161078471 - AluJo SINE Alu -47 265 22 1418 157 68 4 chr6 28201120 28201369 -161078185 - AluSg SINE Alu -22 288 24 2216 116 0 7 chr6 28203065 28203368 -161076186 + AluSg SINE Alu 1 301 -9 1023 217 86 45 chr6 28203473 28203619 -161075935 + AluJo SINE Alu 1 139 -163 2264 100 0 16 chr6 28203619 28203928 -161075626 + AluSx SINE Alu 7 310 -2 1023 217 86 45 chr6 28203928 28204071 -161075483 + AluJo SINE Alu 139 302 0 2321 125 8 19 chr6 28204910 28205271 -161074283 + MER39B LTR ERV1 3 359 -294 1629 238 53 37 chr6 28205271 28205977 -161073577 + MER49 LTR ERV1 1 923 0 1620 152 24 1 chr6 28205977 28206256 -161073298 + MER39B LTR ERV1 356 622 0 781 227 35 0 chr6 28206524 28206696 -161072858 - FRAM SINE Alu -1 175 1 2091 135 0 13 chr6 28207040 28207352 -161072202 + AluSx SINE Alu 1 308 -4 990 198 90 12 chr6 28207352 28207695 -161071859 - Charlie5 DNA MER1_type -9 2603 2234 349 231 50 33 chr6 28207698 28207735 -161071819 - MER3 DNA MER1_type 6 168 133 1935 130 0 63 chr6 28207735 28208051 -161071503 + AluSx SINE Alu 1 296 -16 349 231 50 33 chr6 28208051 28208134 -161071420 - MER3 DNA MER1_type -29 133 46 1252 47 0 0 chr6 28211561 28211776 -161067778 - AluSp SINE Alu 0 351 137 22 70 0 0 chr6 28212721 28212764 -161066790 + AT_rich Low_complexity Low_complexity 1 43 0 1939 151 0 10 chr6 28213087 28213379 -161066175 + AluSx SINE Alu 1 289 -23 1453 124 5 0 chr6 28213386 28213587 -161065967 + AluSg/x SINE Alu 82 283 -27 216 0 0 0 chr6 28214398 28214422 -161065132 + (CA)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 28214675 28214701 -161064853 + (TAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr6 28214700 28214723 -161064831 + (GAA)n Simple_repeat Simple_repeat 2 24 0 * 2120 116 0 14 chr6 28214871 28215204 -161064350 + AluSx SINE Alu 1 329 0 181 346 47 37 chr6 28215901 28216008 -161063546 + MIR SINE MIR 33 140 -68 2951 148 91 36 chr6 28216236 28216853 -161062701 + MER39B LTR ERV1 3 653 0 25 31 0 0 chr6 28217085 28217117 -161062437 + AT_rich Low_complexity Low_complexity 1 32 0 283 277 48 0 chr6 28217207 28217290 -161062264 - Charlie4a DNA MER1_type 0 508 422 400 248 200 23 chr6 28217348 28217582 -161061972 - Charlie4a DNA MER1_type -181 327 53 1922 95 25 18 chr6 28218578 28218861 -161060693 - AluSg SINE Alu -20 290 6 25 31 0 0 chr6 28221157 28221189 -161058365 + AT_rich Low_complexity Low_complexity 1 32 0 2295 96 3 0 chr6 28221774 28222067 -161057487 + AluSq SINE Alu 1 294 -19 886 179 76 0 chr6 28223423 28223466 -161056088 + MER3 DNA MER1_type 8 64 -145 265 279 101 13 chr6 28223466 28223624 -161055930 - MER3 DNA MER1_type -3 206 35 293 288 0 0 chr6 28223688 28223761 -161055793 - MER5A DNA MER1_type -88 101 29 2257 91 0 7 chr6 28224639 28224935 -161054619 + AluSx SINE Alu 1 294 -18 2052 90 15 0 chr6 28224987 28225254 -161054300 + AluSx SINE Alu 20 290 -22 2028 103 21 0 chr6 28226336 28226618 -161052936 - AluSp SINE Alu -25 288 1 1595 137 16 42 chr6 28226708 28227014 -161052540 + AluSx SINE Alu 3 300 -12 2029 105 0 51 chr6 28227023 28227337 -161052217 + AluSx SINE Alu 1 298 -14 530 218 41 29 chr6 28228040 28228210 -161051344 - MER112 DNA MER1_type -12 248 77 294 297 59 34 chr6 28228279 28228397 -161051157 + LTR67 LTR ERVL 51 171 -386 315 275 28 18 chr6 28228571 28228680 -161050874 + LTR67 LTR ERVL 376 485 -72 1021 197 110 8 chr6 28228840 28229094 -161050460 + MLT1D LTR MaLR 3 282 -223 188 263 62 12 chr6 28229102 28229182 -161050372 + L2 LINE L2 2887 2970 -302 198 0 0 0 chr6 28229740 28229762 -161049792 + (A)n Simple_repeat Simple_repeat 1 22 0 554 293 82 9 chr6 28229852 28230263 -161049291 + LTR33 LTR ERVL 25 511 -10 22 0 0 0 chr6 28230776 28230798 -161048756 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 152 26 chr6 28230869 28231139 -161048415 - L1MC4 LINE L1 -153 7889 7586 2255 78 10 3 chr6 28232489 28232785 -161046769 + AluY SINE Alu 1 298 -13 2056 100 17 7 chr6 28233059 28233348 -161046206 - AluSq SINE Alu -21 292 1 1633 97 9 4 chr6 28234067 28234295 -161045259 - AluSg/x SINE Alu 0 312 84 2025 96 7 30 chr6 28234322 28234624 -161044930 + AluSq SINE Alu 2 296 -17 499 229 99 0 chr6 28234665 28234796 -161044758 + MER34 LTR ERV1 360 503 -39 1447 159 16 60 chr6 28234909 28235224 -161044330 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 28236226 28236248 -161043306 + AT_rich Low_complexity Low_complexity 1 22 0 328 182 0 152 chr6 28237427 28237526 -161042028 - FLAM SINE Alu -6 127 44 2533 43 3 3 chr6 28239079 28239378 -161040176 + AluY SINE Alu 1 299 -12 2476 61 3 0 chr6 28239391 28239688 -161039866 + AluY SINE Alu 1 298 -13 191 35 0 35 chr6 28239706 28239735 -161039819 + (TA)n Simple_repeat Simple_repeat 1 28 0 242 231 39 0 chr6 28240629 28240681 -161038873 - MLT1J LTR MaLR -220 291 238 2160 99 10 10 chr6 28240684 28240978 -161038576 + AluSx SINE Alu 7 300 -12 1752 171 10 13 chr6 28241219 28241518 -161038036 - AluJb SINE Alu -11 301 4 222 37 0 0 chr6 28241703 28241730 -161037824 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2084 87 44 0 chr6 28241747 28242022 -161037532 - AluSp SINE Alu -26 287 1 329 272 72 16 chr6 28242309 28242434 -161037120 - LTR24B LTR ERV1 -45 531 400 2629 115 10 30 chr6 28242439 28242838 -161036716 + LTR22A LTR ERVK 68 458 0 9312 139 3 6 chr6 28242895 28244283 -161035271 + HERVK22 LTR ERVK 81 1464 -5373 4952 120 13 3 chr6 28244293 28244993 -161034561 + HERVK22 LTR ERVK 4587 5293 -1544 1652 145 4 0 chr6 28244987 28245229 -161034325 + HERVK22 LTR ERVK 6595 6837 0 * 2934 133 13 2 chr6 28245229 28245682 -161033872 + LTR22A LTR ERVK 1 458 0 2058 108 35 3 chr6 28245734 28246021 -161033533 + AluSg SINE Alu 1 296 -14 768 218 6 18 chr6 28246155 28246320 -161033234 - FRAM SINE Alu -6 170 8 188 322 68 34 chr6 28246381 28246499 -161033055 + MIR SINE MIR 29 150 -112 1632 226 113 18 chr6 28246702 28247215 -161032339 + LTR48B LTR ERV1 1 562 -82 672 288 99 39 chr6 28247213 28247564 -161031990 + MLT1J2 LTR MaLR 9 386 -64 * 201 140 0 60 chr6 28247871 28247887 -161031667 + (GAAAA)n Simple_repeat Simple_repeat 5 20 -31 1537 182 9 64 chr6 28247887 28248217 -161031337 + AluJo SINE Alu 1 312 0 201 140 0 60 chr6 28248217 28248250 -161031304 + (GAAAA)n Simple_repeat Simple_repeat 20 51 0 30 27 0 0 chr6 28248787 28248824 -161030730 + AT_rich Low_complexity Low_complexity 1 37 0 2176 100 13 23 chr6 28248988 28249298 -161030256 + AluSx SINE Alu 1 307 -5 2348 92 0 0 chr6 28249298 28249592 -161029962 + AluSp SINE Alu 1 294 -19 3075 127 65 41 chr6 28249789 28250161 -161029393 - LTR49 LTR ERV1 0 595 203 2182 105 10 3 chr6 28250161 28250457 -161029097 - AluSx SINE Alu -14 298 1 3075 127 65 41 chr6 28250457 28250665 -161028889 - LTR49 LTR ERV1 -392 203 1 2204 179 17 20 chr6 28250669 28250722 -161028832 - LTR56 LTR ERV1 0 437 385 2335 81 0 3 chr6 28250722 28251017 -161028537 + AluSc SINE Alu 1 294 -15 1963 72 97 7 chr6 28251022 28251300 -161028254 + AluY SINE Alu 2 304 -7 2204 179 17 20 chr6 28251300 28251705 -161027849 - LTR56 LTR ERV1 -56 381 9 743 194 0 8 chr6 28251705 28251839 -161027715 + FLAM_C SINE Alu 1 133 0 1848 124 0 15 chr6 28252001 28252266 -161027288 - AluSx SINE Alu -12 300 40 453 234 27 9 chr6 28252266 28252377 -161027177 + MER4C LTR ERV1 353 465 0 1885 169 40 30 chr6 28252377 28252780 -161026774 + MER34B LTR ERV1 158 564 -1 751 303 73 24 chr6 28252844 28253174 -161026380 + L2 LINE L2 2967 3312 -1 2022 122 13 16 chr6 28253269 28253573 -161025981 - AluSx SINE Alu -9 303 1 3947 104 78 48 chr6 28253626 28253881 -161025673 + LTR8 LTR ERV1 1 247 -444 1733 131 93 0 chr6 28253881 28254149 -161025405 + AluSx SINE Alu 5 297 -15 3947 104 78 48 chr6 28254149 28254564 -161024990 + LTR8 LTR ERV1 247 691 0 189 132 0 0 chr6 28254926 28254964 -161024590 + (A)n Simple_repeat Simple_repeat 1 38 0 263 267 145 15 chr6 28255159 28255290 -161024264 + MER5B DNA MER1_type 8 155 -23 244 270 153 15 chr6 28255484 28255621 -161023933 - MER5A DNA MER1_type -6 183 28 198 0 0 0 chr6 28257933 28257955 -161021599 + (A)n Simple_repeat Simple_repeat 1 22 0 2119 90 14 3 chr6 28258736 28259025 -161020529 + AluSq SINE Alu 1 292 -21 24 0 0 0 chr6 28260102 28260126 -161019428 + AT_rich Low_complexity Low_complexity 1 24 0 938 193 41 50 chr6 28260328 28260546 -161019008 - AluJb SINE Alu -19 293 78 320 288 41 53 chr6 28260737 28260907 -161018647 + MIR SINE MIR 91 258 -4 1056 214 78 89 chr6 28261708 28262167 -161017387 + MER39 LTR ERV1 1 609 -98 2140 136 83 2 chr6 28262167 28262563 -161016991 - MSTA LTR MaLR 0 428 1 1056 214 78 89 chr6 28262563 28262661 -161016893 + MER39 LTR ERV1 609 707 0 1803 170 95 6 chr6 28262783 28263141 -161016413 - MLT1B LTR MaLR 0 390 1 1927 165 3 0 chr6 28263424 28263727 -161015827 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr6 28264130 28264151 -161015403 + AT_rich Low_complexity Low_complexity 1 21 0 1918 171 7 0 chr6 28264616 28264909 -161014645 - AluSx SINE Alu -17 295 1 2314 64 50 0 chr6 28264914 28265197 -161014357 - AluY SINE Alu -14 297 1 1260 280 174 18 chr6 28266021 28266722 -161012832 - L2 LINE L2 -299 3014 2208 1724 250 56 38 chr6 28267197 28267960 -161011594 + L2 LINE L2 2128 2904 -410 1789 120 58 7 chr6 28268123 28268399 -161011155 + AluSx SINE Alu 1 290 -22 191 264 83 14 chr6 28268545 28268617 -161010937 + L2 LINE L2 3185 3261 -11 2105 87 28 3 chr6 28268982 28269271 -161010283 + AluSc SINE Alu 1 296 -13 2012 99 43 3 chr6 28269381 28269663 -161009891 + AluSg SINE Alu 1 293 -17 248 193 53 0 chr6 28271275 28271332 -161008222 + tRNA-Gly-GGC tRNA tRNA 4 63 -11 389 131 384 40 chr6 28271441 28271540 -161008014 - FLAM_C SINE Alu 0 133 1 684 0 0 0 chr6 28271746 28271818 -161007736 + tRNA-Met-i tRNA tRNA 1 72 -3 2237 134 0 0 chr6 28272610 28272923 -161006631 - AluSq SINE Alu 0 313 1 323 228 101 0 chr6 28273025 28273104 -161006450 - MER68 LTR ERV1 -13 549 463 2922 143 5 2 chr6 28273226 28273654 -161005900 - LTR3 LTR ERVK 0 429 1 41586 170 22 6 chr6 28273657 28280226 -160999328 - HERVK3 LTR ERVK -2 7241 549 2478 80 0 6 chr6 28280226 28280539 -160999015 - AluY SINE Alu 0 311 1 41586 170 22 6 chr6 28280539 28281055 -160998499 - HERVK3 LTR ERVK -6694 549 43 3114 128 0 2 chr6 28281056 28281486 -160998068 - LTR3 LTR ERVK 0 429 1 199 311 111 58 chr6 28281900 28282090 -160997464 - L2 LINE L2 -273 3040 2841 1442 259 49 41 chr6 28282102 28282612 -160996942 - LTR53 LTR ERVL 0 519 6 180 0 0 0 chr6 28282809 28282829 -160996725 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 430 290 143 73 chr6 28282973 28283301 -160996253 + L2 LINE L2 2290 2640 -674 2201 98 0 3 chr6 28283374 28283696 -160995858 + AluSx SINE Alu 1 321 0 216 271 17 0 chr6 28283739 28283798 -160995756 - L2 LINE L2 -8 3305 3246 22 56 0 0 chr6 28284140 28284176 -160995378 + AT_rich Low_complexity Low_complexity 1 36 0 700 14 0 0 chr6 28284897 28284970 -160994584 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 231 276 17 0 chr6 28285055 28285113 -160994441 - L1M1 LINE L1 -6835 730 672 241 176 0 270 chr6 28286737 28286754 -160992800 - L2 LINE L2 0 3313 3293 2171 116 30 21 chr6 28286754 28287089 -160992465 - MER44D DNA MER2_type -1 608 1 241 176 0 270 chr6 28287089 28287293 -160992261 - L2 LINE L2 -20 3293 3152 2721 185 46 13 chr6 28287328 28287853 -160991701 + MER34 LTR ERV1 1 542 0 1650 158 62 7 chr6 28287882 28288154 -160991400 - AluJo SINE Alu -25 287 1 261 0 0 0 chr6 28288229 28288258 -160991296 + (CA)n Simple_repeat Simple_repeat 2 30 0 308 254 56 56 chr6 28288554 28288680 -160990874 - MLT1H LTR MaLR -394 155 30 1335 216 49 45 chr6 28288709 28289029 -160990525 + MER90 LTR ERV1 1 317 -174 1579 124 40 90 chr6 28289029 28289348 -160990206 - AluSx SINE Alu 0 304 1 1335 216 49 45 chr6 28289348 28289520 -160990034 + MER90 LTR ERV1 317 487 -4 297 0 0 0 chr6 28289928 28289961 -160989593 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 741 167 0 0 chr6 28289994 28290102 -160989452 - FLAM_C SINE Alu -34 109 2 253 298 0 48 chr6 28290226 28290330 -160989224 - MER5B DNA MER1_type -63 115 17 727 0 0 24 chr6 28290709 28290791 -160988763 - tRNA-Ser-AGC tRNA tRNA -2 83 4 780 162 0 66 chr6 28291443 28291579 -160987975 - FLAM_C SINE Alu -15 128 2 642 281 45 0 chr6 28291589 28291767 -160987787 - MER90 LTR ERV1 -421 193 8 1436 154 94 34 chr6 28291846 28292113 -160987441 + AluJb SINE Alu 1 283 -29 243 0 0 0 chr6 28292113 28292140 -160987414 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 407 259 60 60 chr6 28292409 28292564 -160986990 - L2 LINE L2 0 3313 3156 1962 166 3 0 chr6 28292564 28292866 -160986688 + AluJb SINE Alu 1 303 -9 407 259 60 60 chr6 28292866 28292895 -160986659 - L2 LINE L2 -156 3157 3129 325 271 52 10 chr6 28292942 28293038 -160986516 - MER5B DNA MER1_type 0 178 79 500 243 0 18 chr6 28293297 28293408 -160986146 + MLT1E LTR MaLR 45 153 -440 355 111 111 14 chr6 28293414 28293486 -160986068 + MLT1F1 LTR MaLR 489 567 0 1531 191 181 36 chr6 28293764 28294157 -160985397 + MLT1D LTR MaLR 1 450 -55 929 182 13 13 chr6 28294158 28294317 -160985237 + FRAM SINE Alu 1 156 -20 2188 105 7 3 chr6 28294319 28294625 -160984929 + AluSg SINE Alu 1 307 -3 286 146 218 0 chr6 28294625 28294680 -160984874 + MLT1D LTR MaLR 437 503 -2 305 197 82 0 chr6 28294858 28294919 -160984635 - tRNA-Gln-CAG tRNA tRNA -5 70 5 367 236 0 0 chr6 28295992 28296064 -160983490 - tRNA-Gln-CAA tRNA tRNA -3 72 1 685 14 0 0 chr6 28296416 28296488 -160983066 - tRNA-Gln-CAA tRNA tRNA -3 72 1 21 0 0 0 chr6 28296561 28296582 -160982972 + AT_rich Low_complexity Low_complexity 1 21 0 685 13 0 13 chr6 28296963 28297039 -160982515 - tRNA-Gln-CAA tRNA tRNA 0 75 1 766 12 0 0 chr6 28297816 28297898 -160981656 - tRNA-Ser-TCA tRNA tRNA -3 82 1 684 0 0 0 chr6 28298344 28298416 -160981138 - tRNA-Met-i tRNA tRNA -3 72 1 256 217 17 0 chr6 28298858 28298918 -160980636 - tRNA-Gly-GGC tRNA tRNA -13 61 1 1915 82 4 16 chr6 28299171 28299427 -160980127 + AluSx SINE Alu 16 268 -44 180 111 0 0 chr6 28299429 28299456 -160980098 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 229 167 0 0 chr6 28299486 28299522 -160980032 - MLT1F1 LTR MaLR -221 346 311 2197 60 71 3 chr6 28299527 28299809 -160979745 - AluSx SINE Alu -11 301 1 714 137 26 0 chr6 28299869 28299986 -160979568 - MER110A LTR ERV1 -310 158 39 504 118 0 59 chr6 28299993 28300078 -160979476 + AluJ/FLAM SINE Alu 9 88 -224 212 308 0 0 chr6 28300521 28300573 -160978981 + L2 LINE L2 3136 3187 -85 228 262 138 42 chr6 28300638 28301016 -160978538 - L1ME4a LINE L1 -4 6117 5704 1456 110 0 72 chr6 28301022 28301115 -160978439 - PABL_B LTR ERV1 0 667 569 2376 106 0 0 chr6 28301115 28301426 -160978128 - AluSx SINE Alu -1 311 1 1456 110 0 72 chr6 28301426 28301568 -160977986 - PABL_B LTR ERV1 -98 569 449 1118 76 0 44 chr6 28301567 28301725 -160977829 - PABL_B LTR ERV1 -516 151 1 * 2349 171 70 19 chr6 28301748 28302141 -160977413 + MER67A LTR ERV1 5 428 -115 2070 93 11 7 chr6 28302141 28302421 -160977133 + AluSq SINE Alu 1 281 -32 2349 171 70 19 chr6 28302421 28302502 -160977052 + MER67A LTR ERV1 428 503 -40 2172 105 13 10 chr6 28302581 28302886 -160976668 - AluSq SINE Alu -7 306 1 364 250 86 88 chr6 28302961 28303222 -160976332 - MER87 LTR ERV1 -393 148 11 560 80 13 0 chr6 28303225 28303300 -160976254 + MLT1B LTR MaLR 313 388 -2 198 0 0 0 chr6 28303424 28303446 -160976108 + (A)n Simple_repeat Simple_repeat 1 22 0 2299 95 0 3 chr6 28303455 28303750 -160975804 + AluSx SINE Alu 1 294 -18 680 14 0 0 chr6 28304322 28304394 -160975160 - tRNA-Trp tRNA tRNA -3 72 1 556 147 39 0 chr6 28305107 28305209 -160974345 + MER5A DNA MER1_type 84 189 0 2229 69 4 0 chr6 28305267 28305575 -160973979 + AluSp SINE Alu 37 345 0 1528 166 40 34 chr6 28305611 28305936 -160973618 - MLT1B LTR MaLR 0 390 64 397 150 0 0 chr6 28305988 28306048 -160973506 - MLT1B LTR MaLR -310 80 21 675 245 143 8 chr6 28306141 28306378 -160973176 - HAL1 LINE L1 -2236 271 3 23 33 0 0 chr6 28306572 28306602 -160972952 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 28306817 28306839 -160972715 + AT_rich Low_complexity Low_complexity 1 22 0 305 177 32 0 chr6 28307638 28307700 -160971854 - AluYb8 SINE Alu -8 300 237 1259 63 0 6 chr6 28307701 28307860 -160971694 - AluSg SINE Alu -152 158 1 680 27 0 0 chr6 28308038 28308111 -160971443 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 470 216 30 126 chr6 28308312 28308511 -160971043 + MER5A DNA MER1_type 9 188 -1 377 260 141 40 chr6 28308690 28309027 -160970527 + L1MC4 LINE L1 7052 7415 -393 306 273 127 9 chr6 28309047 28309157 -160970397 + L1MC5 LINE L1 7334 7456 -505 1358 134 9 18 chr6 28309162 28309385 -160970169 - AluJb SINE Alu -7 305 85 297 128 0 0 chr6 28309386 28309433 -160970121 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 1045 174 82 56 chr6 28309577 28309847 -160969707 - AluJo SINE Alu -35 277 1 361 288 146 9 chr6 28309887 28310120 -160969434 + L1MC4 LINE L1 7778 8042 0 183 273 0 0 chr6 28310909 28310953 -160968601 + L2 LINE L2 3188 3231 -41 23 33 0 0 chr6 28311026 28311056 -160968498 + AT_rich Low_complexity Low_complexity 1 30 0 1282 71 12 12 chr6 28311205 28311373 -160968181 + AluSg/x SINE Alu 133 300 -10 321 308 82 44 chr6 28311532 28311714 -160967840 - L2 LINE L2 -918 2396 2208 2201 75 19 44 chr6 28312236 28312554 -160967000 - AluSg SINE Alu 0 310 1 776 24 0 0 chr6 28312809 28312894 -160966660 + tRNA-Ser-TCC tRNA tRNA 1 85 0 687 14 0 0 chr6 28313360 28313433 -160966121 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 2040 108 14 14 chr6 28313691 28313987 -160965567 - AluSx SINE Alu -13 299 4 639 296 89 41 chr6 28314439 28314875 -160964679 - HAL1 LINE L1 -155 2352 1896 552 233 72 104 chr6 28315124 28315317 -160964237 + MIR SINE MIR 58 244 -18 684 0 0 0 chr6 28315521 28315593 -160963961 - tRNA-Met-i tRNA tRNA -3 72 1 688 27 0 0 chr6 28316661 28316736 -160962818 - tRNA-Trp tRNA tRNA 0 75 1 180 111 0 0 chr6 28317600 28317627 -160961927 + (CCCCG)n Simple_repeat Simple_repeat 1 27 0 445 115 86 137 chr6 28318042 28318181 -160961373 + MIR SINE MIR 124 255 -7 843 159 28 44 chr6 28318227 28318409 -160961145 - AluJb SINE Alu 0 312 134 1616 131 46 19 chr6 28318857 28319116 -160960438 + AluSx SINE Alu 30 295 -17 653 264 126 12 chr6 28319124 28319468 -160960086 + MLT1J2 LTR MaLR 32 436 -14 1899 162 34 0 chr6 28319828 28320123 -160959431 + AluJb SINE Alu 1 305 -7 2250 93 0 27 chr6 28320123 28320424 -160959130 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr6 28320534 28320569 -160958985 + AT_rich Low_complexity Low_complexity 1 35 0 651 265 103 0 chr6 28320624 28320809 -160958745 + MER63A DNA MER1_type 5 208 -2 2431 123 42 24 chr6 28320862 28321286 -160958268 - MSTB1 LTR MaLR 0 432 1 215 298 39 67 chr6 28321286 28321390 -160958164 - MIR SINE MIR -8 254 154 1153 257 73 34 chr6 28321507 28321943 -160957611 + MER90 LTR ERV1 107 559 -16 637 255 113 74 chr6 28322131 28322457 -160957097 - LTR33A LTR ERVL -107 416 78 1766 148 0 0 chr6 28322594 28322903 -160956651 + AluSx SINE Alu 18 326 0 2168 113 0 0 chr6 28323099 28323400 -160956154 - AluSg SINE Alu -9 301 1 1098 199 145 0 chr6 28323721 28323983 -160955571 + MER58B DNA MER1_type 1 300 -41 437 226 0 0 chr6 28324554 28324647 -160954907 - L2 LINE L2 0 3313 3221 358 302 86 29 chr6 28324653 28324792 -160954762 + MLT1L LTR MaLR 322 468 -147 265 179 54 0 chr6 28325429 28325485 -160954069 + MLT1L LTR MaLR 505 563 -52 536 118 16 20 chr6 28326194 28326290 -160953264 + MLT1C LTR MaLR 3 94 -280 907 88 161 0 chr6 28326730 28326867 -160952687 - AluSg SINE Alu -150 160 2 201 291 0 0 chr6 28327073 28327128 -160952426 + G-rich Low_complexity Low_complexity 4 58 0 262 125 0 62 chr6 28327130 28327194 -160952360 + (GGGAGA)n Simple_repeat Simple_repeat 2 61 0 190 155 48 24 chr6 28327238 28327322 -160952232 + GA-rich Low_complexity Low_complexity 4 89 0 1902 154 0 6 chr6 28327646 28327957 -160951597 - AluSx SINE Alu -3 309 1 840 144 0 69 chr6 28327957 28328117 -160951437 - AluJb SINE Alu -21 291 143 273 266 149 43 chr6 28328237 28328425 -160951129 - L2 LINE L2 -64 3249 3042 207 171 73 0 chr6 28328429 28328470 -160951084 + MIR SINE MIR 121 164 -98 646 338 56 45 chr6 28328692 28329543 -160950011 + MER66-int LTR ERV1 3312 4349 -3512 2246 97 0 7 chr6 28329543 28329853 -160949701 + AluSg SINE Alu 1 308 -2 646 338 56 45 chr6 28329853 28330121 -160949433 + MER66-int LTR ERV1 4349 4613 -3248 237 132 0 0 chr6 28330402 28330440 -160949114 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 805 118 0 0 chr6 28330479 28330589 -160948965 - FLAM_C SINE Alu -25 118 9 567 293 66 35 chr6 28330813 28331131 -160948423 + MER66-int LTR ERV1 3438 3765 -520 377 183 92 67 chr6 28331424 28331544 -160948010 + MER66-int LTR ERV1 6539 6661 -15 460 295 6 12 chr6 28331746 28331919 -160947635 + MER41B LTR ERV1 258 429 -206 1727 156 30 41 chr6 28332182 28332536 -160947018 + LTR29 LTR ERV1 303 622 0 285 316 51 34 chr6 28332666 28332783 -160946771 + MIR SINE MIR 4 122 -140 184 272 18 79 chr6 28333281 28333395 -160946159 + MIR SINE MIR 156 262 0 427 260 70 45 chr6 28333427 28333627 -160945927 + L1MC5 LINE L1 7534 7738 -223 1419 157 59 21 chr6 28333633 28333920 -160945634 + AluJo SINE Alu 1 298 -14 202 122 20 20 chr6 28334069 28334118 -160945436 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 2270 93 0 0 chr6 28334138 28334438 -160945116 - AluSx SINE Alu -7 305 6 2260 81 3 13 chr6 28334451 28334760 -160944794 - AluSx SINE Alu -6 306 1 1641 124 127 0 chr6 28334765 28335024 -160944530 - AluSx SINE Alu -20 292 1 315 218 0 0 chr6 28335193 28335248 -160944306 - L2 LINE L2 -4 3309 3255 1658 166 0 17 chr6 28335261 28335556 -160943998 + AluJb SINE Alu 1 290 -22 23 54 0 0 chr6 28336371 28336408 -160943146 + AT_rich Low_complexity Low_complexity 1 37 0 2686 151 2 28 chr6 28336521 28336650 -160942904 - MER70A-int LTR ERVL -2977 2046 1915 3956 153 51 3 chr6 28336650 28337322 -160942232 + MER44D DNA MER2_type 1 704 -1 2686 151 2 28 chr6 28337322 28337628 -160941926 - MER70A-int LTR ERVL -3108 1915 1622 3242 157 57 4 chr6 28337629 28338177 -160941377 - MER70A-int LTR ERVL -3832 1191 615 501 108 0 0 chr6 28338191 28338256 -160941298 - U6 snRNA snRNA -41 66 2 657 148 0 57 chr6 28338259 28338281 -160941273 - MER70A-int LTR ERVL -4376 647 625 2538 114 40 25 chr6 28338281 28338532 -160941022 - L1MA2 LINE L1 0 6304 6041 2181 121 0 0 chr6 28338532 28338845 -160940709 - AluSq SINE Alu 0 313 1 2538 114 40 25 chr6 28338845 28339041 -160940513 - L1MA2 LINE L1 -263 6041 5850 657 148 0 57 chr6 28339041 28339140 -160940414 - MER70A-int LTR ERVL -4398 625 533 558 188 10 20 chr6 28339150 28339251 -160940303 + MER70-int LTR ERVL 27 126 -4897 * 1589 202 24 12 chr6 28339248 28339589 -160939965 - MER70A-int LTR ERVL -4512 511 167 3208 117 29 64 chr6 28339589 28340217 -160939337 - MER4B LTR ERV1 0 779 1 867 213 12 12 chr6 28340218 28340387 -160939167 - MER70A-int LTR ERVL -4854 169 1 2021 187 8 124 chr6 28340387 28340921 -160938633 - MER70A LTR ERVL 0 472 1 254 223 1 129 chr6 28340965 28341029 -160938525 + MLT1J1 LTR MaLR 346 389 -57 1293 221 50 7 chr6 28341029 28341328 -160938226 - AluJb SINE Alu 0 312 1 254 223 1 129 chr6 28341328 28341373 -160938181 + MLT1J1 LTR MaLR 389 438 -8 1422 152 23 38 chr6 28341446 28341710 -160937844 + MER4E LTR ERV1 1 260 -519 2268 99 0 10 chr6 28341711 28342024 -160937530 - AluSq SINE Alu -3 310 1 1789 148 33 10 chr6 28342030 28342199 -160937355 - AluSx SINE Alu 0 312 131 1851 162 0 6 chr6 28342199 28342514 -160937040 - AluSq SINE Alu 0 313 1 1789 148 33 10 chr6 28342514 28342649 -160936905 - AluSx SINE Alu -181 131 1 1392 133 84 0 chr6 28342654 28342879 -160936675 - AluJb SINE Alu -11 301 58 680 87 0 0 chr6 28342891 28342983 -160936571 - AluSg/x SINE Alu -8 304 213 1967 118 0 0 chr6 28342985 28343294 -160936260 + AluSx SINE Alu 1 309 0 954 111 0 15 chr6 28343659 28343794 -160935760 + FLAM_C SINE Alu 1 133 0 348 275 33 11 chr6 28343827 28343918 -160935636 - MIR3 SINE MIR -34 174 82 289 183 0 67 chr6 28344023 28344083 -160935471 - 7SK RNA RNA -2 191 136 757 154 0 0 chr6 28344087 28344197 -160935357 + AluSq/x SINE Alu 2 111 -202 39 0 0 0 chr6 28344320 28344359 -160935195 + AT_rich Low_complexity Low_complexity 1 39 0 1938 109 33 0 chr6 28344359 28344634 -160934920 - AluSg SINE Alu -26 284 1 1982 145 0 3 chr6 28344761 28345065 -160934489 - AluSx SINE Alu -7 305 3 26 0 0 0 chr6 28345074 28345100 -160934454 + AT_rich Low_complexity Low_complexity 1 26 0 2272 89 0 13 chr6 28345424 28345738 -160933816 - AluSg SINE Alu 0 310 1 187 300 57 14 chr6 28345953 28346023 -160933531 + MIR SINE MIR 93 165 -97 210 326 157 11 chr6 28346110 28346288 -160933266 + L2 LINE L2 1343 1546 -1768 651 279 14 23 chr6 28346353 28346568 -160932986 - L2 LINE L2 0 3313 3101 453 151 27 0 chr6 28346574 28346647 -160932907 - AluJ/FRAM SINE Alu -21 291 217 501 220 23 38 chr6 28346649 28346781 -160932773 - AluJo/FLAM SINE Alu -170 132 3 2119 264 41 32 chr6 28346820 28347577 -160931977 - L2 LINE L2 -314 2999 2237 416 164 0 0 chr6 28347635 28347702 -160931852 - MLT1E LTR MaLR 0 593 527 1227 139 0 65 chr6 28347702 28347932 -160931622 + AluSg/x SINE Alu 83 297 -13 459 230 23 0 chr6 28347933 28348020 -160931534 - MLT1J LTR MaLR -53 601 513 262 284 83 18 chr6 28348096 28348205 -160931349 + L2 LINE L2 2536 2651 -663 965 204 78 0 chr6 28348556 28348762 -160930792 - LTR65 LTR ERV1 -267 402 181 42 20 0 0 chr6 28349078 28349127 -160930427 + AT_rich Low_complexity Low_complexity 1 49 0 531 243 89 106 chr6 28349133 28349537 -160930017 - MLT1J LTR MaLR -107 404 8 396 59 0 0 chr6 28350695 28350746 -160928808 + (TG)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chr6 28350913 28350933 -160928621 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 307 331 35 28 chr6 28350993 28351135 -160928419 + L1ME LINE L1 5652 5794 -370 288 315 82 26 chr6 28351428 28351660 -160927894 - L1ME LINE L1 -350 5771 5527 386 309 102 17 chr6 28352290 28352643 -160926911 - L1MC4a LINE L1 -157 5964 5582 305 299 10 31 chr6 28352704 28352801 -160926753 + L2 LINE L2 3213 3307 -6 379 234 71 52 chr6 28353031 28353185 -160926369 - L2 LINE L2 -656 2658 2502 933 306 45 32 chr6 28354486 28354531 -160925023 + LTR33 LTR ERVL 52 95 -426 2193 208 61 24 chr6 28354531 28355085 -160924469 - MER90 LTR ERV1 0 575 1 933 306 45 32 chr6 28355085 28355503 -160924051 + LTR33 LTR ERVL 95 521 0 237 286 0 0 chr6 28356003 28356059 -160923495 - L2 LINE L2 -13 3259 3204 787 273 99 96 chr6 28356153 28356203 -160923351 + L1MC4a LINE L1 5254 5302 -2506 1863 129 16 3 chr6 28356203 28356506 -160923048 + AluSx SINE Alu 1 307 -5 787 273 99 96 chr6 28356506 28356906 -160922648 + L1MC4a LINE L1 5302 5709 -2099 2111 126 0 0 chr6 28356906 28357199 -160922355 - AluSx SINE Alu -19 293 1 787 273 99 96 chr6 28357199 28357443 -160922111 + L1MC4a LINE L1 5709 5951 -1857 692 274 97 30 chr6 28357497 28357734 -160921820 - MIR SINE MIR -3 259 7 225 0 0 0 chr6 28358458 28358483 -160921071 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr6 28358809 28358829 -160920725 + (A)n Simple_repeat Simple_repeat 1 20 0 351 0 0 0 chr6 28359422 28359461 -160920093 + (A)n Simple_repeat Simple_repeat 1 39 0 203 357 70 23 chr6 28360276 28360405 -160919149 + MIR SINE MIR 68 202 -60 1323 215 67 39 chr6 28360475 28360865 -160918689 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28361000 28361026 -160918528 - MIR SINE MIR -113 149 124 2326 71 0 22 chr6 28361151 28361462 -160918092 + AluY SINE Alu 7 310 -1 487 296 35 23 chr6 28362506 28362678 -160916876 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 28362678 28362863 -160916691 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 28363454 28363529 -160916025 + L2 LINE L2 3190 3269 -3 1577 256 90 21 chr6 28363663 28364054 -160915500 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 28364054 28364364 -160915190 - AluJb SINE Alu 0 302 1 1577 256 90 21 chr6 28364364 28364558 -160914996 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 28364561 28364835 -160914719 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 28365475 28365625 -160913929 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 28366892 28367202 -160912352 - AluSx SINE Alu -6 306 6 1067 89 17 17 chr6 28367815 28367995 -160911559 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 28367998 28368132 -160911422 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 28369083 28369114 -160910440 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 28369356 28369663 -160909891 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 28369681 28369901 -160909653 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 28370141 28370180 -160909374 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 28370770 28371070 -160908484 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 28371181 28371266 -160908288 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 28372669 28372802 -160906752 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 28373931 28374060 -160905494 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 28374060 28374355 -160905199 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 28374355 28374956 -160904598 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 28378970 28379470 -160900084 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 28379500 28379989 -160899565 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 28380023 28380078 -160899476 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 28380283 28380518 -160899036 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 28380702 28381698 -160897856 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 28381751 28382331 -160897223 - MLT1E LTR MaLR 0 593 1 1854 161 7 0 chr6 28382531 28382841 -160896713 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 28382927 28383087 -160896467 - FRAM SINE Alu -20 156 1 213 318 23 11 chr6 28383371 28383459 -160896095 + L2 LINE L2 2273 2361 -953 793 289 40 4 chr6 28383589 28383842 -160895712 + MIR SINE MIR 1 262 0 286 238 0 38 chr6 28383879 28383959 -160895595 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 28384240 28384385 -160895169 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 28384743 28384886 -160894668 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 28384933 28385015 -160894539 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 28385079 28385300 -160894254 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 28385307 28385610 -160893944 + AluSx SINE Alu 6 310 -2 584 212 63 86 chr6 28385832 28385886 -160893668 - MLT1J LTR MaLR -24 487 433 239 0 32 0 chr6 28385886 28385917 -160893637 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 584 212 63 86 chr6 28385917 28386117 -160893437 - MLT1J LTR MaLR -78 433 239 1910 125 10 0 chr6 28386782 28387070 -160892484 + AluSx SINE Alu 1 291 -21 282 332 10 25 chr6 28387925 28388127 -160891427 + L1ME LINE L1 5637 5835 -286 365 271 19 58 chr6 28388252 28388288 -160891266 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 28388288 28388586 -160890968 - AluSx SINE Alu -14 298 1 365 271 19 58 chr6 28388586 28388756 -160890798 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 28388922 28389033 -160890521 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 28389778 28389984 -160889570 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 28390082 28390177 -160889377 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 28390413 28390566 -160888988 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 28391878 28392402 -160887152 - MER90 LTR ERV1 0 614 92 848 308 44 27 chr6 28392444 28392853 -160886701 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 28393344 28393385 -160886169 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 28393593 28394135 -160885419 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 28394200 28394357 -160885197 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 28395407 28395450 -160884104 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 28395696 28395760 -160883794 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 28395917 28395940 -160883614 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 28395940 28396032 -160883522 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 28396221 28396244 -160883310 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 28397372 28397773 -160881781 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28397908 28397934 -160881620 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 28399103 28399271 -160880283 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 28399274 28399438 -160880116 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 28399911 28400195 -160879359 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 28400350 28400425 -160879129 + L2 LINE L2 3190 3269 -3 1773 249 92 20 chr6 28400553 28401094 -160878460 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 28401147 28401458 -160878096 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 28402084 28402236 -160877318 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 28402461 28402840 -160876714 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 28402840 28404489 -160875065 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 28404489 28404751 -160874803 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 28405929 28405962 -160873592 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 28407554 28407812 -160871742 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 28408818 28408890 -160870664 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 28409026 28409316 -160870238 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 28410049 28410254 -160869300 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 28410599 28410795 -160868759 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 28411310 28411397 -160868157 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 28412176 28412822 -160866732 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 28413322 28413457 -160866097 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 28415527 28415823 -160863731 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 28417341 28417824 -160861730 - Charlie1b DNA MER1_type -1 522 10 2786 157 84 34 chr6 28417854 28418377 -160861177 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 28418522 28419581 -160859973 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 28419609 28420126 -160859428 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 28420138 28420449 -160859105 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 28420565 28421135 -160858419 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 28421398 28421581 -160857973 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 28422092 28422341 -160857213 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 28422378 28422442 -160857112 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 28422768 28422882 -160856672 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 28423224 28423430 -160856124 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 28423468 28423515 -160856039 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 28423590 28423791 -160855763 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 28423801 28424115 -160855439 + AluSq SINE Alu 1 312 -1 560 246 17 132 chr6 28424346 28424635 -160854919 - MLT1J LTR MaLR -17 494 239 447 19 0 0 chr6 28425993 28426045 -160853509 + (TG)n Simple_repeat Simple_repeat 1 52 0 247 344 15 31 chr6 28426249 28426444 -160853110 + L1ME LINE L1 5644 5835 -286 389 272 61 77 chr6 28426581 28426786 -160852768 - L1M4 LINE L1 -373 5801 5601 646 195 9 9 chr6 28426929 28427042 -160852512 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 28427675 28428018 -160851536 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 28428098 28428193 -160851361 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 28428423 28428577 -160850977 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 28429877 28429922 -160849632 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 28429922 28430472 -160849082 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 28430472 28430885 -160848669 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 28431392 28431472 -160848082 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 28431537 28431936 -160847618 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 28431936 28432248 -160847306 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 28432248 28432490 -160847064 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 28432546 28432585 -160846969 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 28432585 28432880 -160846674 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 28432880 28433082 -160846472 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 28435721 28435848 -160843706 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 28435921 28436310 -160843244 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 28437609 28437781 -160841773 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 28437784 28437966 -160841588 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 28438557 28438632 -160840922 + L2 LINE L2 3190 3269 -3 1150 130 0 25 chr6 28438803 28439003 -160840551 - AluSc SINE Alu -17 292 98 870 198 6 6 chr6 28439117 28439279 -160840275 - FRAM SINE Alu -17 159 1 1144 162 9 24 chr6 28439647 28439857 -160839697 - AluJb SINE Alu -19 293 87 246 32 0 0 chr6 28439861 28439892 -160839662 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1725 171 0 0 chr6 28439895 28440176 -160839378 - AluSx SINE Alu -31 281 1 1853 147 0 7 chr6 28440744 28441051 -160838503 - AluSx SINE Alu -7 305 1 318 259 47 0 chr6 28441352 28441437 -160838117 - MER94 DNA DNA -10 124 36 424 122 102 51 chr6 28441438 28441536 -160838018 + AluSg/x SINE Alu 203 305 -7 597 206 39 105 chr6 28442536 28442822 -160836732 + MER33 DNA MER1_type 58 324 0 263 43 0 65 chr6 28443930 28443976 -160835578 + (TC)n Simple_repeat Simple_repeat 1 43 0 485 242 26 44 chr6 28445848 28446007 -160833547 + MLT1G LTR MaLR 362 515 -15 240 216 0 0 chr6 28446275 28446326 -160833228 - MLT1K LTR MaLR -348 240 190 445 309 52 100 chr6 28446571 28446920 -160832634 + LTR16C LTR ERVL 98 429 -62 1669 219 82 45 chr6 28447000 28447117 -160832437 + MLT1E2 LTR MaLR 71 182 -444 1553 180 51 3 chr6 28447117 28447412 -160832142 + AluJo SINE Alu 1 309 -3 1669 219 82 45 chr6 28447412 28447783 -160831771 + MLT1E2 LTR MaLR 182 577 -49 1100 120 0 0 chr6 28447798 28447956 -160831598 + AluY SINE Alu 1 158 -153 487 296 35 23 chr6 28498514 28498686 -160780868 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 28498686 28498871 -160780683 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 28499462 28499537 -160780017 + L2 LINE L2 3190 3269 -3 1593 254 90 21 chr6 28499671 28500062 -160779492 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 28500062 28500372 -160779182 - AluJb SINE Alu 0 302 1 1593 254 90 21 chr6 28500372 28500566 -160778988 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 28500569 28500843 -160778711 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 28501483 28501633 -160777921 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 28502900 28503210 -160776344 - AluSx SINE Alu -6 306 6 1046 94 17 17 chr6 28503819 28503999 -160775555 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 28504002 28504136 -160775418 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 28505087 28505118 -160774436 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 28505360 28505667 -160773887 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 28505685 28505905 -160773649 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 28506145 28506184 -160773370 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 28506774 28507074 -160772480 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 28507185 28507270 -160772284 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 28508673 28508806 -160770748 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 28509935 28510064 -160769490 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 28510064 28510359 -160769195 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 28510359 28510960 -160768594 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 28514974 28515474 -160764080 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 28515504 28515993 -160763561 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 28516027 28516082 -160763472 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 28516287 28516522 -160763032 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 28516706 28517702 -160761852 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 28517755 28518335 -160761219 - MLT1E LTR MaLR 0 593 1 1819 168 7 0 chr6 28518537 28518847 -160760707 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 28518933 28519093 -160760461 - FRAM SINE Alu -20 156 1 228 274 0 0 chr6 28519413 28519464 -160760090 + L2 LINE L2 2311 2361 -953 793 289 40 4 chr6 28519594 28519847 -160759707 + MIR SINE MIR 1 262 0 279 250 0 38 chr6 28519884 28519964 -160759590 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 28520246 28520391 -160759163 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 28520748 28520891 -160758663 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 28520938 28521020 -160758534 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 28521084 28521305 -160758249 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 28521312 28521615 -160757939 + AluSx SINE Alu 6 310 -2 515 200 32 158 chr6 28521837 28522122 -160757432 - MLT1J LTR MaLR -24 487 239 1910 125 10 0 chr6 28522787 28523075 -160756479 + AluSx SINE Alu 1 291 -21 295 332 10 25 chr6 28523930 28524132 -160755422 + L1ME LINE L1 5637 5835 -286 346 275 19 58 chr6 28524257 28524293 -160755261 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 28524293 28524591 -160754963 - AluSx SINE Alu -14 298 1 346 275 19 58 chr6 28524591 28524761 -160754793 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 28524927 28525038 -160754516 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 28525783 28525989 -160753565 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 28526087 28526182 -160753372 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 28526418 28526571 -160752983 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 28527883 28528407 -160751147 - MER90 LTR ERV1 0 614 92 818 307 44 29 chr6 28528449 28528859 -160750695 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 28529350 28529391 -160750163 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 28529599 28530141 -160749413 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 28530206 28530363 -160749191 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 28531413 28531456 -160748098 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 28531702 28531766 -160747788 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 28531923 28531946 -160747608 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 28531946 28532038 -160747516 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 28532227 28532250 -160747304 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 28533378 28533779 -160745775 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28533914 28533940 -160745614 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 28535109 28535277 -160744277 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 28535280 28535444 -160744110 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 28535917 28536201 -160743353 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 28536356 28536431 -160743123 + L2 LINE L2 3190 3269 -3 1798 248 92 20 chr6 28536559 28537100 -160742454 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 28537153 28537464 -160742090 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 28538090 28538242 -160741312 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 28538467 28538846 -160740708 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 28538846 28540495 -160739059 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 28540495 28540757 -160738797 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 28541935 28541968 -160737586 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 28543560 28543818 -160735736 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 28544824 28544896 -160734658 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 28545032 28545322 -160734232 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 28546055 28546260 -160733294 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 28546605 28546801 -160732753 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 28547316 28547403 -160732151 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 28548182 28548828 -160730726 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 28549328 28549463 -160730091 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 28551533 28551829 -160727725 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 28553347 28553830 -160725724 - Charlie1b DNA MER1_type -1 522 10 2771 157 84 34 chr6 28553860 28554383 -160725171 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 28554528 28555587 -160723967 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 28555615 28556132 -160723422 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 28556144 28556455 -160723099 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 28556571 28557141 -160722413 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 28557404 28557587 -160721967 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 28558098 28558347 -160721207 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 28558384 28558448 -160721106 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 28558774 28558888 -160720666 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 28559230 28559436 -160720118 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 28559474 28559521 -160720033 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 28559596 28559797 -160719757 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 28559807 28560121 -160719433 + AluSq SINE Alu 1 312 -1 531 250 21 132 chr6 28560352 28560640 -160718914 - MLT1J LTR MaLR -17 494 239 375 23 0 0 chr6 28561998 28562042 -160717512 + (TG)n Simple_repeat Simple_repeat 1 44 0 247 344 15 31 chr6 28562246 28562441 -160717113 + L1ME LINE L1 5644 5835 -286 646 195 9 9 chr6 28562926 28563039 -160716515 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 28563672 28564015 -160715539 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 28564095 28564190 -160715364 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 28564420 28564574 -160714980 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 28565874 28565919 -160713635 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 28565919 28566469 -160713085 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 28566469 28566882 -160712672 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 28567389 28567469 -160712085 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 28567534 28567933 -160711621 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 28567933 28568245 -160711309 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 28568245 28568487 -160711067 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 28568543 28568582 -160710972 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 28568582 28568877 -160710677 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 28568877 28569079 -160710475 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 28571718 28571845 -160707709 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 28571918 28572307 -160707247 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 28573606 28573778 -160705776 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 28573781 28573963 -160705591 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 28574554 28574629 -160704925 + L2 LINE L2 3190 3269 -3 1956 115 0 14 chr6 28574800 28575096 -160704458 - AluSc SINE Alu -17 292 1 1685 217 82 45 chr6 28575111 28575482 -160704072 - MLT1E2 LTR MaLR -49 577 182 1544 180 51 3 chr6 28575482 28575776 -160703778 - AluJo SINE Alu -4 308 1 1685 217 82 45 chr6 28575776 28575893 -160703661 - MLT1E2 LTR MaLR -444 182 71 417 312 52 100 chr6 28575973 28576322 -160703232 - LTR16C LTR ERVL -62 429 98 240 216 0 0 chr6 28576567 28576618 -160702936 + MLT1K LTR MaLR 190 240 -348 485 242 26 44 chr6 28576886 28577045 -160702509 - MLT1G LTR MaLR -15 531 362 263 43 0 65 chr6 28578917 28578963 -160700591 + (GA)n Simple_repeat Simple_repeat 1 43 0 610 203 39 105 chr6 28580071 28580357 -160699197 - MER33 DNA MER1_type 0 324 58 424 122 102 51 chr6 28581378 28581476 -160698078 - AluSg/x SINE Alu -7 302 200 318 259 47 0 chr6 28581477 28581562 -160697992 + MER94 DNA DNA 36 124 -10 1829 150 0 7 chr6 28581863 28582170 -160697384 + AluSx SINE Alu 1 305 -7 1741 167 0 0 chr6 28582738 28583019 -160696535 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr6 28583022 28583049 -160696505 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1169 156 9 24 chr6 28583053 28583264 -160696290 + AluJb SINE Alu 87 294 -18 870 198 6 6 chr6 28583633 28583795 -160695759 + FRAM SINE Alu 1 159 -17 263 281 0 24 chr6 28584315 28584397 -160695157 + CT-rich Low_complexity Low_complexity 4 83 0 273 29 0 0 chr6 28584979 28585013 -160694541 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1927 134 3 3 chr6 28585046 28585337 -160694217 - AluSx SINE Alu -21 291 1 1013 287 113 15 chr6 28585498 28586162 -160693392 - L2 LINE L2 -4 3309 2567 774 178 0 15 chr6 28586650 28586785 -160692769 + FLAM_C SINE Alu 1 133 0 2119 96 0 0 chr6 28588545 28588847 -160690707 - AluSx SINE Alu 0 302 1 1090 190 24 108 chr6 28590567 28591093 -160688461 - Charlie1b DNA MER1_type 0 523 42 847 182 30 66 chr6 28591099 28591297 -160688257 + AluJo SINE Alu 104 294 -18 1943 100 14 10 chr6 28591301 28591590 -160687964 + AluSq SINE Alu 1 290 -23 2903 173 27 20 chr6 28591690 28592239 -160687315 + MLT2B3 LTR ERVL 1 553 -1 850 226 49 10 chr6 28592450 28592654 -160686900 - MLT1A1 LTR MaLR 0 365 154 401 132 74 4 chr6 28592681 28592885 -160686669 + AluSx SINE Alu 1 297 -13 311 0 0 25 chr6 28592885 28592925 -160686629 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 577 255 29 39 chr6 28592926 28593130 -160686424 - L2 LINE L2 -876 2438 2237 473 265 77 88 chr6 28593223 28593574 -160685980 - MLT1J LTR MaLR -46 465 119 2731 215 34 32 chr6 28593821 28594490 -160685064 - LTR27 LTR ERV1 0 802 2 854 140 180 181 chr6 28595355 28595700 -160683854 + MER57B LTR ERV1 50 403 0 1734 125 16 46 chr6 28595993 28596298 -160683256 - AluSx SINE Alu -16 296 1 774 162 95 7 chr6 28596392 28596540 -160683014 - MER88 LTR ERVL 0 464 304 813 165 0 15 chr6 28596862 28596995 -160682559 + FLAM_C SINE Alu 2 132 -1 874 126 21 7 chr6 28597735 28597878 -160681676 + MER4E LTR ERV1 630 774 -5 351 136 0 0 chr6 28598318 28598377 -160681177 + (TTC)n Simple_repeat Simple_repeat 1 59 0 632 120 162 34 chr6 28598467 28598584 -160680970 - FLAM_C SINE Alu -11 132 1 284 233 0 55 chr6 28601121 28601194 -160678360 - MER63 DNA MER1_type -3 1059 991 330 209 0 0 chr6 28601196 28601263 -160678291 - MER63 DNA MER1_type -97 739 673 2158 103 3 0 chr6 28601332 28601622 -160677932 - AluSp SINE Alu -22 291 1 207 0 0 0 chr6 28602056 28602079 -160677475 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 309 278 72 0 chr6 28602079 28602176 -160677378 - MIR SINE MIR -67 141 38 811 271 88 51 chr6 28602509 28602878 -160676676 + LTR16A LTR ERVL 5 400 -50 353 190 140 70 chr6 28602904 28602967 -160676587 + Charlie1 DNA MER1_type 1 75 -1380 1993 102 67 0 chr6 28602967 28603250 -160676304 - AluSx SINE Alu -10 302 1 353 190 140 70 chr6 28603250 28603286 -160676268 + Charlie1 DNA MER1_type 75 107 -1348 1824 148 0 10 chr6 28603287 28603585 -160675969 + AluJb SINE Alu 1 295 -17 496 126 0 46 chr6 28603585 28603672 -160675882 + AluJo SINE Alu 52 134 -178 588 165 45 30 chr6 28603685 28603818 -160675736 + Charlie1 DNA MER1_type 100 234 -2527 1817 138 24 3 chr6 28603831 28604122 -160675432 + AluSx SINE Alu 1 297 -15 1669 181 0 3 chr6 28604126 28604425 -160675129 - AluJb SINE Alu -14 298 1 690 192 8 0 chr6 28604425 28604550 -160675004 + Charlie1 DNA MER1_type 2636 2761 0 1552 186 23 75 chr6 28604672 28604755 -160674799 + L1M4 LINE L1 7 93 -6449 2105 104 3 3 chr6 28604755 28605052 -160674502 + AluSp SINE Alu 1 297 -16 1552 186 23 75 chr6 28605052 28605355 -160674199 + L1M4 LINE L1 93 373 -6169 889 244 96 96 chr6 28605355 28605930 -160673624 - MER34C LTR ERV1 0 585 11 1635 214 17 53 chr6 28605940 28606295 -160673259 + L1M4 LINE L1 370 711 -5831 183 42 0 0 chr6 28606748 28606772 -160672782 + (GA)n Simple_repeat Simple_repeat 1 24 0 197 277 30 89 chr6 28607494 28607524 -160672030 + MIR3 SINE MIR 78 108 -100 1853 163 41 30 chr6 28607524 28607893 -160671661 - THE1C LTR MaLR -2 373 1 197 277 30 89 chr6 28607893 28607963 -160671591 + MIR3 SINE MIR 108 172 -36 181 214 0 48 chr6 28608004 28608046 -160671508 - MIR SINE MIR -64 198 159 1108 178 15 5 chr6 28608050 28608275 -160671279 - AluJo SINE Alu 0 312 86 527 257 69 61 chr6 28608411 28608826 -160670728 - MLT1H LTR MaLR 0 549 72 201 74 0 0 chr6 28609725 28609752 -160669802 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1813 150 0 17 chr6 28609967 28610267 -160669287 + AluSx SINE Alu 1 295 -17 263 313 43 17 chr6 28610275 28610390 -160669164 - MLT1-int LTR MaLR -835 536 419 1395 233 57 20 chr6 28610502 28610854 -160668700 - MER21B LTR ERV1 -23 840 476 26 0 0 0 chr6 28610857 28610883 -160668671 + AT_rich Low_complexity Low_complexity 1 26 0 1110 211 104 123 chr6 28610902 28611100 -160668454 - MER21B LTR ERV1 -371 492 292 1330 175 183 23 chr6 28611100 28611488 -160668066 + LTR7 LTR ERV1 1 450 0 1110 211 104 123 chr6 28611488 28611791 -160667763 - MER21B LTR ERV1 -571 292 1 253 269 28 64 chr6 28611921 28612062 -160667492 - MLT1E LTR MaLR 0 593 458 888 114 0 15 chr6 28612248 28612379 -160667175 + AluJ SINE Alu 5 133 -169 1336 131 5 22 chr6 28612379 28612539 -160667015 + AluSg/x SINE Alu 86 242 -70 3963 109 24 2 chr6 28612539 28613091 -160666463 - LTR6A LTR ERV1 0 564 1 1336 131 5 22 chr6 28613091 28613152 -160666402 + AluSg/x SINE Alu 242 303 -9 689 180 158 0 chr6 28613153 28613292 -160666262 + AluJ SINE Alu 136 296 -16 2039 116 0 0 chr6 28614173 28614467 -160665087 + AluSx SINE Alu 1 294 -18 1250 217 125 21 chr6 28614509 28614812 -160664742 + MER90 LTR ERV1 1 408 -206 1680 164 31 0 chr6 28614812 28615105 -160664449 + AluJb SINE Alu 1 302 -10 1250 217 125 21 chr6 28615105 28615242 -160664312 + MER90 LTR ERV1 408 529 -85 634 152 9 9 chr6 28616790 28616895 -160662659 + FLAM_A SINE Alu 4 108 -34 235 249 29 10 chr6 28617006 28617074 -160662480 + MER5A DNA MER1_type 60 116 -62 499 263 157 59 chr6 28617078 28617607 -160661947 + HAL1 LINE L1 1891 2471 -36 1979 125 21 0 chr6 28617733 28618021 -160661533 + AluSx SINE Alu 1 294 -18 233 189 53 105 chr6 28618026 28618121 -160661433 - L2 LINE L2 -1342 1972 1883 2013 123 7 3 chr6 28619125 28619426 -160660128 + AluSx SINE Alu 1 302 -10 225 250 17 33 chr6 28619698 28619758 -160659796 - L2 LINE L2 -568 2746 2688 228 235 82 12 chr6 28619936 28620021 -160659533 + L1P LINE L1 5317 5407 -747 21 0 0 0 chr6 28620034 28620055 -160659499 + AT_rich Low_complexity Low_complexity 1 21 0 1997 115 3 11 chr6 28620189 28620498 -160659056 + AluSx SINE Alu 1 307 0 240 261 134 63 chr6 28620499 28620641 -160658913 + L1ME4a LINE L1 5605 5756 -365 338 240 113 60 chr6 28620696 28620846 -160658708 + L1ME4a LINE L1 5933 6090 -31 512 210 72 83 chr6 28621099 28621280 -160658274 - MIR SINE MIR 0 262 84 2053 89 7 0 chr6 28621870 28622173 -160657381 + AluSg SINE Alu 1 305 0 2227 136 59 15 chr6 28623286 28623677 -160655877 - MER83 LTR ERV1 0 448 41 244 284 154 24 chr6 28623805 28623974 -160655580 - L1ME LINE L1 -236 5885 5695 714 195 47 7 chr6 28624289 28624438 -160655116 + FRAM SINE Alu 11 165 -11 1635 135 76 17 chr6 28624441 28624730 -160654824 + AluSx SINE Alu 5 310 -2 312 110 27 14 chr6 28624848 28624921 -160654633 + (TA)n Simple_repeat Simple_repeat 2 75 0 1597 162 87 0 chr6 28625734 28626000 -160653554 - AluJo SINE Alu -23 289 1 1871 163 0 14 chr6 28626665 28626959 -160652595 - AluSx SINE Alu -20 292 3 2386 73 0 20 chr6 28627072 28627374 -160652180 + AluY SINE Alu 1 296 -15 2206 121 0 0 chr6 28628174 28628463 -160651091 + AluSx SINE Alu 1 289 -23 1875 138 14 10 chr6 28628676 28628967 -160650587 + AluSx SINE Alu 1 292 -20 2276 110 37 103 chr6 28631906 28631976 -160647578 - MSTA LTR MaLR -2 426 353 2447 91 0 0 chr6 28631976 28632283 -160647271 + AluSg SINE Alu 1 307 -3 2276 110 37 103 chr6 28632283 28632526 -160647028 - MSTA LTR MaLR -75 353 150 2199 82 14 24 chr6 28632526 28632820 -160646734 + AluSx SINE Alu 1 291 -21 2276 110 37 103 chr6 28632820 28632961 -160646593 - MSTA LTR MaLR -278 150 1 827 226 0 18 chr6 28633175 28633339 -160646215 + MER21B LTR ERV1 332 492 -371 23 0 0 0 chr6 28633942 28633965 -160645589 + AT_rich Low_complexity Low_complexity 1 23 0 1918 143 0 7 chr6 28634261 28634582 -160644972 + AluSx SINE Alu 1 319 0 255 265 133 0 chr6 28635279 28635377 -160644177 - L1ME4a LINE L1 -76 6045 5935 318 127 42 0 chr6 28635390 28635461 -160644093 + (TA)n Simple_repeat Simple_repeat 2 75 0 222 210 310 10 chr6 28635602 28635702 -160643852 + MER5A DNA MER1_type 55 184 -5 2246 111 7 0 chr6 28635792 28636098 -160643456 + AluSx SINE Alu 2 309 -3 497 314 66 22 chr6 28636164 28636390 -160643164 - MIR SINE MIR -7 255 20 761 329 81 7 chr6 28636810 28637266 -160642288 + L2 LINE L2 2203 2692 -622 516 81 0 0 chr6 28637269 28637343 -160642211 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 2358 101 0 0 chr6 28637359 28637667 -160641887 + AluSc SINE Alu 1 308 -1 245 125 0 0 chr6 28637681 28637713 -160641841 - Alu SINE Alu -20 282 251 974 105 0 0 chr6 28637723 28637856 -160641698 - FLAM_C SINE Alu 0 133 1 415 267 149 76 chr6 28637856 28638419 -160641135 + L2 LINE L2 2687 3296 -17 475 120 0 0 chr6 28638629 28638704 -160640850 + MER53 DNA DNA 107 181 -8 261 180 0 0 chr6 28638987 28639037 -160640517 + MLT1I LTR MaLR 91 140 -269 310 253 0 0 chr6 28639184 28639271 -160640283 + G-rich Low_complexity Low_complexity 1 87 0 2027 96 11 21 chr6 28639271 28639552 -160640002 - AluSq SINE Alu -35 278 1 2129 112 0 33 chr6 28639580 28639884 -160639670 - AluSq SINE Alu -19 294 1 542 235 142 27 chr6 28639908 28640091 -160639463 + AluJo SINE Alu 85 288 -24 38 22 0 0 chr6 28640251 28640296 -160639258 + AT_rich Low_complexity Low_complexity 1 45 0 2263 87 0 3 chr6 28640306 28640594 -160638960 + AluSq SINE Alu 2 288 -25 693 120 0 10 chr6 28640594 28640694 -160638860 - U6 snRNA snRNA -8 99 1 520 206 7 73 chr6 28640730 28640866 -160638688 + L2 LINE L2 3183 3309 -4 1339 108 5 18 chr6 28641013 28641235 -160638319 - L1MA8 LINE L1 -3 6288 6070 184 292 92 0 chr6 28641238 28641303 -160638251 - MER5A DNA MER1_type -77 112 42 262 314 0 67 chr6 28641394 28641499 -160638055 - MIR SINE MIR -84 124 27 270 176 0 0 chr6 28641687 28641738 -160637816 - L1ME3A LINE L1 0 6170 6120 298 107 18 62 chr6 28642052 28642164 -160637390 + (CCCCG)n Simple_repeat Simple_repeat 2 108 0 739 0 0 0 chr6 28642443 28642526 -160637028 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 15641 158 69 43 chr6 28642953 28646593 -160632961 - MER109 Unknown Unknown 0 2432 -1114 2373 100 0 0 chr6 28646593 28646893 -160632661 + AluSc SINE Alu 1 300 -9 15641 158 69 43 chr6 28646893 28647535 -160632019 - MER109 Unknown Unknown -3546 4294966182 150 2420 78 0 3 chr6 28647535 28647828 -160631726 + AluSc SINE Alu 1 292 -17 15641 158 69 43 chr6 28647828 28647983 -160631571 - MER109 Unknown Unknown -2281 151 1 641 297 5 14 chr6 28649646 28649858 -160629696 + MIR SINE MIR 40 249 -13 209 135 19 0 chr6 28649925 28649977 -160629577 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1289 246 133 21 chr6 28649984 28650344 -160629210 - MLT2B1 LTR ERVL -45 475 58 1859 140 0 31 chr6 28650344 28650636 -160628918 - AluJo SINE Alu -29 283 1 1289 246 133 21 chr6 28650636 28650702 -160628852 - MLT2B1 LTR ERVL -462 58 1 345 269 39 0 chr6 28650702 28650806 -160628748 - L2 LINE L2 -32 3240 3133 198 299 42 90 chr6 28651108 28651252 -160628302 + L2 LINE L2 2915 3051 -221 1195 176 18 40 chr6 28651311 28651538 -160628016 - AluJb SINE Alu -90 222 1 1513 179 3 48 chr6 28651573 28651886 -160627668 + AluJo SINE Alu 1 299 -13 2164 89 7 0 chr6 28651899 28652201 -160627353 + AluSx SINE Alu 1 304 0 2480 93 0 0 chr6 28652823 28653135 -160626419 + AluSx SINE Alu 1 312 0 679 0 0 0 chr6 28654152 28654226 -160625328 - tRNA-Thr-ACT tRNA tRNA -3 74 1 240 35 0 0 chr6 28654972 28654980 -160624574 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 35 0 0 chr6 28654980 28655009 -160624545 + (TG)n Simple_repeat Simple_repeat 2 30 0 2612 43 0 3 chr6 28655432 28655734 -160623820 + AluY SINE Alu 1 301 -10 1483 158 78 14 chr6 28656291 28656575 -160622979 + MLT2C1 LTR ERVL 10 311 -86 2142 73 59 7 chr6 28656712 28656999 -160622555 - AluSq SINE Alu -11 302 1 1836 60 5 0 chr6 28657190 28657407 -160622147 + AluSp SINE Alu 85 302 -11 505 212 29 51 chr6 28657408 28657545 -160622009 + Charlie4 DNA MER1_type 1811 1944 -17 654 14 0 0 chr6 28658733 28658806 -160620748 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 686 0 0 0 chr6 28659289 28659363 -160620191 + tRNA-Val-GTG tRNA tRNA 1 74 -2 2057 113 44 3 chr6 28660513 28660806 -160618748 - AluSx SINE Alu -7 305 1 258 105 0 0 chr6 28660870 28660908 -160618646 + (A)n Simple_repeat Simple_repeat 1 38 0 2374 105 3 0 chr6 28661564 28661868 -160617686 - AluSx SINE Alu -6 306 2 2105 91 51 0 chr6 28662291 28662566 -160616988 - AluSg SINE Alu -21 289 1 1588 151 26 4 chr6 28662597 28662869 -160616685 - MLT1B LTR MaLR 0 390 113 1525 159 28 40 chr6 28663438 28663765 -160615789 - L1MC2 LINE L1 -10 6334 6012 887 83 0 0 chr6 28664657 28664766 -160614788 - AluSg/x SINE Alu -12 297 189 2056 75 0 30 chr6 28664766 28665031 -160614523 + AluSx SINE Alu 53 309 -3 400 308 60 44 chr6 28665443 28666370 -160613184 - L1ME4a LINE L1 -96 6025 5083 1373 254 78 80 chr6 28667490 28668431 -160611123 - L1ME4a LINE L1 -1055 5091 4153 2380 92 3 0 chr6 28668465 28668771 -160610783 - AluSx SINE Alu -5 307 1 1893 105 37 54 chr6 28668782 28669076 -160610478 - AluSx SINE Alu -21 291 3 181 247 240 19 chr6 28669077 28669231 -160610323 - L2 LINE L2 -563 2751 2564 188 333 83 0 chr6 28669265 28669373 -160610181 + MIR SINE MIR 90 206 -56 2361 90 0 10 chr6 28669792 28670102 -160609452 + AluSx SINE Alu 1 307 -5 261 299 34 8 chr6 28670200 28670317 -160609237 - L2 LINE L2 -219 3053 2934 2284 87 6 13 chr6 28670649 28670961 -160608593 - AluSq SINE Alu -3 310 1 3348 113 84 6 chr6 28671097 28671611 -160607943 - MER41C LTR ERV1 0 554 1 619 71 0 12 chr6 28671638 28671722 -160607832 + AluSg/x SINE Alu 218 300 -12 1201 224 75 35 chr6 28672123 28672415 -160607139 - Charlie4a DNA MER1_type -1456 505 191 2325 75 20 0 chr6 28672415 28672709 -160606845 - AluY SINE Alu -11 300 1 1201 224 75 35 chr6 28672709 28672814 -160606740 - Charlie4a DNA MER1_type -1770 191 92 441 266 71 7 chr6 28672813 28672967 -160606587 - MER112 DNA MER1_type -96 164 1 * 1192 163 92 0 chr6 28673329 28673568 -160605986 + Tigger7 DNA MER2_type 7 267 -466 555 129 75 11 chr6 28673566 28673659 -160605895 + Tigger7 DNA MER2_type 2389 2487 0 * 398 200 0 0 chr6 28673711 28673781 -160605773 - tRNA-Lys-AAA tRNA tRNA -1 75 6 584 81 11 0 chr6 28674001 28674088 -160605466 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 639 14 0 0 chr6 28674738 28674810 -160604744 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 668 0 0 0 chr6 28675357 28675431 -160604123 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 258 304 43 22 chr6 28676179 28676271 -160603283 - MER5A DNA MER1_type -40 149 56 203 295 57 38 chr6 28676183 28676288 -160603266 + MER5A DNA MER1_type 55 161 -28 * 643 0 0 0 chr6 28676505 28676577 -160602977 + tRNA-Pro-CCT tRNA tRNA 1 72 -3 252 77 0 0 chr6 28676721 28676760 -160602794 + (T)n Simple_repeat Simple_repeat 1 39 0 665 0 0 0 chr6 28677781 28677855 -160601699 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 223 264 0 0 chr6 28678364 28678417 -160601137 + MER5B DNA MER1_type 17 69 -109 941 266 169 3 chr6 28678631 28679003 -160600551 - L2 LINE L2 -432 2882 2449 664 157 45 15 chr6 28679318 28679452 -160600102 - FLAM_C SINE Alu -1 142 5 1967 154 0 0 chr6 28679609 28679907 -160599647 + AluJb SINE Alu 1 298 -14 435 139 28 0 chr6 28680188 28680260 -160599294 + U3 snRNA snRNA 1 74 -143 1934 125 0 77 chr6 28680376 28680689 -160598865 + AluJo SINE Alu 1 289 -23 2655 23 7 3 chr6 28680696 28681000 -160598554 + AluY SINE Alu 1 305 -6 2310 108 7 0 chr6 28681097 28681394 -160598160 + AluSq SINE Alu 1 299 -14 2030 130 32 0 chr6 28681401 28681686 -160597868 + AluSx SINE Alu 2 295 -17 259 277 64 0 chr6 28681788 28681882 -160597672 + L1MC5 LINE L1 7269 7368 -593 426 275 72 72 chr6 28681939 28682372 -160597182 + L1MC4 LINE L1 7610 8042 0 1206 146 150 5 chr6 28682705 28682925 -160596629 + AluSq SINE Alu 1 252 -61 1948 234 4 37 chr6 28682925 28683383 -160596171 - LTR2 LTR ERV1 0 449 7 228 163 0 0 chr6 28683420 28683463 -160596091 + A-rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 28684127 28684149 -160595405 + AT_rich Low_complexity Low_complexity 1 22 0 1258 162 27 18 chr6 28684423 28684645 -160594909 + THE1C LTR MaLR 1 224 -151 1288 132 0 64 chr6 28685025 28685115 -160594439 - AluJb SINE Alu -17 295 201 2332 97 102 0 chr6 28685115 28685457 -160594097 + MER51B LTR ERV1 1 377 0 1288 132 0 64 chr6 28685457 28685585 -160593969 - AluJb SINE Alu -111 201 91 2279 83 0 10 chr6 28685585 28685875 -160593679 + AluSg SINE Alu 9 295 -15 818 136 8 205 chr6 28685913 28686171 -160593383 + AluJo SINE Alu 87 293 -19 186 216 0 0 chr6 28687010 28687047 -160592507 + L2 LINE L2 3236 3272 0 2309 40 29 0 chr6 28687107 28687416 -160592138 - AluY SINE Alu 0 319 3 748 202 5 94 chr6 28687595 28687798 -160591756 - MER20 DNA MER1_type -18 201 17 1663 144 3 30 chr6 28687848 28688147 -160591407 - AluJo SINE Alu -21 291 1 829 199 110 16 chr6 28688242 28688488 -160591066 + LTR37B LTR ERV1 199 467 -1 1974 121 9 19 chr6 28688824 28689139 -160590415 - AluSx SINE Alu 0 312 1 1955 127 3 33 chr6 28689366 28689673 -160589881 + AluSx SINE Alu 1 298 -14 501 22 0 198 chr6 28690093 28690184 -160589370 + tRNA-Tyr-TAC tRNA tRNA 1 73 -3 308 285 200 8 chr6 28690715 28690845 -160588709 + MER5B DNA MER1_type 24 178 0 2149 108 0 0 chr6 28691394 28691682 -160587872 - AluSx SINE Alu -24 288 1 252 0 0 0 chr6 28691684 28691712 -160587842 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr6 28691929 28691949 -160587605 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2289 86 6 16 chr6 28691988 28692301 -160587253 - AluSq SINE Alu -3 310 1 2136 100 36 0 chr6 28692444 28692745 -160586809 + AluSx SINE Alu 1 312 0 612 27 0 0 chr6 28693098 28693171 -160586383 - tRNA-Ala-GCA tRNA tRNA -3 73 1 2374 89 3 6 chr6 28693661 28693974 -160585580 + AluSx SINE Alu 1 312 0 187 178 0 67 chr6 28694211 28694256 -160585298 - L2 LINE L2 -22 3250 3209 2029 135 7 0 chr6 28694671 28694968 -160584586 + AluSx SINE Alu 1 299 -13 1056 150 35 55 chr6 28695356 28695556 -160583998 + AluJb SINE Alu 104 299 -13 254 108 0 0 chr6 28695592 28695629 -160583925 + LTR50 LTR ERVL 6 42 -753 1409 205 86 18 chr6 28695629 28695964 -160583590 + MLT1A2 LTR MaLR 1 358 -16 1112 206 7 136 chr6 28695964 28696303 -160583251 + MLT1A1 LTR MaLR 1 279 -86 1783 126 35 0 chr6 28696303 28696557 -160582997 - AluSx SINE Alu -20 292 30 1112 206 7 136 chr6 28696557 28696629 -160582925 + MLT1A1 LTR MaLR 279 359 -6 503 33 0 187 chr6 28696804 28696895 -160582659 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 384 271 181 16 chr6 28696990 28697178 -160582376 + LTR50 LTR ERVL 42 260 -535 499 33 0 178 chr6 28698338 28698428 -160581126 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 1418 155 66 56 chr6 28698994 28699325 -160580229 - AluJb SINE Alu 0 312 1 5480 197 14 37 chr6 28699376 28700351 -160579203 - L1PA16 LINE L1 -1 6165 5169 1945 175 0 0 chr6 28700351 28700659 -160578895 - AluSx SINE Alu -4 308 1 5480 197 14 37 chr6 28700659 28701202 -160578352 - L1PA16 LINE L1 -997 5169 4615 2278 115 0 0 chr6 28701202 28701506 -160578048 - AluSx SINE Alu -8 304 1 5480 197 14 37 chr6 28701506 28701990 -160577564 - L1PA16 LINE L1 -1551 4615 4176 2252 109 7 0 chr6 28701990 28702293 -160577261 - AluSp SINE Alu -8 305 1 5480 197 14 37 chr6 28702293 28702350 -160577204 - L1PA16 LINE L1 -1990 4176 4119 230 228 89 25 chr6 28702849 28702928 -160576626 + L2 LINE L2 1548 1631 -1683 4430 186 87 9 chr6 28702962 28703871 -160575683 + MER45B DNA AcHobo 1 980 -60 613 187 28 0 chr6 28703904 28704011 -160575543 - FLAM_A SINE Alu -32 110 1 1749 169 30 7 chr6 28704021 28704323 -160575231 - AluJb SINE Alu -3 309 1 1992 261 89 22 chr6 28704328 28705152 -160574402 + L2 LINE L2 1827 2705 -609 207 0 0 0 chr6 28705169 28705192 -160574362 + (GGGTG)n Simple_repeat Simple_repeat 5 27 0 856 314 67 20 chr6 28705198 28705599 -160573955 - LTR16C LTR ERVL -38 453 34 2075 116 22 0 chr6 28705704 28705981 -160573573 + AluSx SINE Alu 1 283 -29 227 31 31 0 chr6 28705996 28706028 -160573526 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1047 260 183 22 chr6 28756856 28757217 -160522337 + MLT1E2 LTR MaLR 205 623 -3 2333 106 3 0 chr6 28757566 28757878 -160521676 - AluSp SINE Alu 0 313 1 813 142 0 0 chr6 28758081 28758194 -160521360 + AluSq/x SINE Alu 2 114 -199 1984 118 0 0 chr6 28758391 28758662 -160520892 + AluSx SINE Alu 1 271 -41 358 357 0 28 chr6 28759897 28760079 -160519475 + (CATA)n Simple_repeat Simple_repeat 4 180 0 * 387 350 18 0 chr6 28759954 28760117 -160519437 + (CATG)n Simple_repeat Simple_repeat 1 166 0 237 224 0 0 chr6 28760120 28760178 -160519376 + (CATA)n Simple_repeat Simple_repeat 4 61 0 194 240 27 0 chr6 28760239 28760314 -160519240 + (TATG)n Simple_repeat Simple_repeat 2 78 0 330 290 10 24 chr6 28760431 28760646 -160518908 + (TATG)n Simple_repeat Simple_repeat 1 211 0 * 365 339 28 11 chr6 28760572 28760749 -160518805 + (CATG)n Simple_repeat Simple_repeat 1 180 0 444 279 0 0 chr6 28760765 28760926 -160518628 + (CATA)n Simple_repeat Simple_repeat 2 162 0 270 265 13 13 chr6 28760960 28761111 -160518443 + (CATA)n Simple_repeat Simple_repeat 3 153 0 354 280 8 33 chr6 28761177 28761422 -160518132 + (CATA)n Simple_repeat Simple_repeat 1 239 0 3597 83 91 0 chr6 28761422 28761587 -160517967 - LTR66 LTR ERVL 0 610 461 504 48 0 0 chr6 28761587 28761650 -160517904 + (TA)n Simple_repeat Simple_repeat 2 64 0 3597 83 91 0 chr6 28761650 28761980 -160517574 - LTR66 LTR ERVL -149 461 70 1583 150 86 11 chr6 28761984 28762264 -160517290 + MSTA LTR MaLR 128 428 0 682 161 25 0 chr6 28763757 28763875 -160515679 - AluSc SINE Alu -3 306 186 2400 92 3 0 chr6 28766993 28767297 -160512257 - AluSp SINE Alu -8 305 1 508 259 35 7 chr6 28767393 28767536 -160512018 + L1M4 LINE L1 3627 3773 -2373 1437 201 36 3 chr6 28767549 28767858 -160511696 + L1M4 LINE L1 4071 4389 -1757 3011 126 10 43 chr6 28767875 28768367 -160511187 + L1MC1 LINE L1 5858 6333 0 2860 252 28 53 chr6 28768367 28768854 -160510700 + L1M4 LINE L1 3785 4283 -1863 2295 103 3 0 chr6 28768854 28769155 -160510399 + AluSp SINE Alu 1 302 -11 2860 252 28 53 chr6 28769155 28769649 -160509905 + L1M4 LINE L1 4283 4737 -1409 1850 114 53 0 chr6 28769649 28769912 -160509642 + AluSg SINE Alu 1 277 -33 2860 252 28 53 chr6 28769912 28770033 -160509521 + L1M4 LINE L1 4737 4860 -1286 2432 85 0 7 chr6 28770398 28770705 -160508849 + AluSg SINE Alu 1 305 -5 995 211 11 74 chr6 28771248 28771307 -160508247 + L1M4 LINE L1 4843 4904 -1242 1830 173 3 3 chr6 28771307 28771613 -160507941 - AluJo SINE Alu -2 310 5 995 211 11 74 chr6 28771613 28771838 -160507716 + L1M4 LINE L1 4904 5109 -1037 4299 229 52 9 chr6 28771850 28772239 -160507315 - L1M4 LINE L1 -788 5358 4987 2905 136 35 11 chr6 28772239 28772702 -160506852 + MER101 LTR ERV1 1 474 0 4299 229 52 9 chr6 28772702 28773472 -160506082 - L1M4 LINE L1 -1159 4987 4150 1174 157 42 46 chr6 28773473 28773734 -160505820 - L1MC3 LINE L1 -92 7693 7434 341 24 24 0 chr6 28773754 28773795 -160505759 - tRNA-Gln-CAA tRNA tRNA -26 49 8 340 244 25 17 chr6 28773807 28773926 -160505628 - L1M4 LINE L1 -1005 5141 5022 309 278 23 75 chr6 28773951 28774124 -160505430 - MER90 LTR ERV1 -4 610 447 1611 155 25 22 chr6 28774360 28774638 -160504916 + AluJb SINE Alu 1 279 -33 1048 64 40 6 chr6 28774639 28774812 -160504742 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 25 83 0 0 chr6 28775080 28775140 -160504414 + AT_rich Low_complexity Low_complexity 1 60 0 2369 93 3 3 chr6 28775147 28775458 -160504096 - AluSp SINE Alu -1 312 2 6053 142 16 10 chr6 28775459 28776480 -160503074 - L1MC2 LINE L1 -13 6331 5305 836 66 9 0 chr6 28776491 28776597 -160502957 - AluYb8 SINE Alu -12 306 200 554 276 0 0 chr6 28776705 28776821 -160502733 - HAL1 LINE L1 -2191 316 201 23 33 0 0 chr6 28776826 28776856 -160502698 + AT_rich Low_complexity Low_complexity 1 30 0 1256 222 4 4 chr6 28776887 28777126 -160502428 - MER8 DNA MER2_type 0 239 1 1647 139 107 12 chr6 28777668 28778006 -160501548 - L1MD1 LINE L1 -8 6234 5865 2266 100 7 0 chr6 28778096 28778396 -160501158 - AluSp SINE Alu -11 302 1 2321 85 7 0 chr6 28778721 28779014 -160500540 - AluSp SINE Alu -18 295 1 1419 185 36 25 chr6 28779668 28779984 -160499570 + AluJb SINE Alu 1 319 0 940 113 7 0 chr6 28780097 28780239 -160499315 + MER4E LTR ERV1 1 143 -623 1664 158 67 0 chr6 28780618 28780902 -160498652 - AluJo SINE Alu -9 303 1 361 234 51 80 chr6 28780975 28781150 -160498404 - L1M4 LINE L1 -2859 3287 3118 751 63 0 0 chr6 28781164 28781259 -160498295 - AluSc SINE Alu -214 95 1 460 195 26 10 chr6 28787087 28787211 -160492343 + MIR SINE MIR 66 189 -65 1209 254 84 86 chr6 28787602 28788220 -160491334 + L2 LINE L2 1274 1890 -1424 1075 311 121 9 chr6 28788242 28788673 -160490881 + L2 LINE L2 2811 3289 -24 4691 158 26 66 chr6 28789420 28790430 -160489124 + LTR5 LTR ERVK 1 969 0 891 247 53 35 chr6 28790719 28791002 -160488552 + L2 LINE L2 2375 2662 -652 * 1165 304 87 28 chr6 28790981 28791454 -160488100 + L2 LINE L2 2813 3313 0 267 31 0 0 chr6 28792712 28792744 -160486810 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1649 83 32 24 chr6 28792744 28792997 -160486557 - L1PA10 LINE L1 -13 6155 5901 616 179 24 0 chr6 28793375 28793498 -160486056 + Tigger7 DNA MER2_type 2361 2486 -1 27 0 0 0 chr6 28793620 28793647 -160485907 + AT_rich Low_complexity Low_complexity 1 27 0 2245 85 3 0 chr6 28793678 28793985 -160485569 + AluSp SINE Alu 1 308 0 298 336 34 4 chr6 28794099 28794361 -160485193 + L1P LINE L1 2110 2379 -3767 490 335 105 27 chr6 28794398 28794987 -160484567 + L1MC4a LINE L1 2448 3093 -3053 351 148 0 18 chr6 28794990 28795058 -160484496 + FLAM_A SINE Alu 64 117 -16 766 177 0 0 chr6 28795066 28795179 -160484375 + FLAM_C SINE Alu 6 118 -25 798 318 63 32 chr6 28795200 28795767 -160483787 + L1MC4a LINE L1 3106 3690 -2456 1013 157 6 29 chr6 28795786 28795958 -160483596 - FRAM SINE Alu -16 160 1 774 276 92 50 chr6 28795970 28796797 -160482757 + L1MC4a LINE L1 3743 4604 -1542 752 199 129 11 chr6 28796824 28797010 -160482544 + MER58A DNA MER1_type 2 209 -15 301 344 31 14 chr6 28797180 28797474 -160482080 + L1MC4a LINE L1 4796 5094 -1052 315 0 0 0 chr6 28797529 28797545 -160482009 + (TG)n Simple_repeat Simple_repeat 1 51 0 315 0 0 0 chr6 28797545 28797580 -160481974 + (TG)n Simple_repeat Simple_repeat 2 36 0 2371 88 3 0 chr6 28797599 28797896 -160481658 - AluSp SINE Alu -10 303 6 560 177 78 35 chr6 28797919 28798157 -160481397 + L1MC4a LINE L1 5189 5428 -743 3747 220 53 41 chr6 28798168 28799157 -160480397 + L1MC/D LINE L1 3966 4942 -1204 2323 141 38 34 chr6 28799157 28799631 -160479923 + L1MA8 LINE L1 5814 6289 -2 3747 220 53 41 chr6 28799631 28799745 -160479809 + L1MC/D LINE L1 4942 5053 -1093 1754 161 3 7 chr6 28799745 28800030 -160479524 - AluSx SINE Alu -25 287 4 3747 220 53 41 chr6 28800030 28800264 -160479290 + L1MC/D LINE L1 5053 5320 -826 687 97 0 0 chr6 28800306 28800399 -160479155 + AluS SINE Alu 1 93 -219 1076 131 10 116 chr6 28800535 28800822 -160478732 + L1MC1 LINE L1 6096 6342 0 572 233 8 0 chr6 28800817 28800950 -160478604 + L1MC/D LINE L1 5423 5556 -2252 * 5361 222 99 54 chr6 28800955 28803151 -160476403 + L1MC4a LINE L1 5404 7697 -111 302 44 22 22 chr6 28803163 28803208 -160476346 + L1MC4 LINE L1 7805 7849 -193 419 202 65 48 chr6 28803209 28803333 -160476221 - MER105 DNA DNA -1 203 78 702 130 15 123 chr6 28803367 28803428 -160476126 + L1MC4 LINE L1 7863 7929 -113 1660 194 83 21 chr6 28803428 28803800 -160475754 + MSTD LTR MaLR 1 395 -1 702 130 15 123 chr6 28803800 28803953 -160475601 + L1MC4 LINE L1 7929 8042 0 364 298 187 15 chr6 28804018 28804216 -160475338 + MIR SINE MIR 31 262 0 941 257 146 28 chr6 28804769 28804785 -160474769 + L2 LINE L2 2700 2713 -600 2359 74 0 10 chr6 28804785 28805084 -160474470 + AluY SINE Alu 1 296 -15 941 257 146 28 chr6 28805084 28805499 -160474055 + L2 LINE L2 2713 3259 -54 231 368 9 19 chr6 28805612 28805718 -160473836 + L2 LINE L2 2980 3084 -188 652 295 30 15 chr6 28805916 28806116 -160473438 - MIR SINE MIR -57 205 3 721 258 140 0 chr6 28808481 28808702 -160470852 - MIR SINE MIR -3 259 8 303 300 49 114 chr6 28808875 28808925 -160470629 - L2 LINE L2 -5 3267 3215 2156 101 37 0 chr6 28808925 28809221 -160470333 + AluSp SINE Alu 1 307 -6 303 300 49 114 chr6 28809221 28809477 -160470077 - L2 LINE L2 -57 3215 2981 564 180 0 10 chr6 28809747 28809847 -160469707 + FLAM_A SINE Alu 2 100 -42 695 134 81 70 chr6 28810065 28810251 -160469303 + MER53 DNA DNA 1 188 -1 2244 120 3 0 chr6 28811380 28811689 -160467865 - AluSx SINE Alu -2 310 1 2189 113 0 0 chr6 28811689 28811979 -160467575 - AluSx SINE Alu -21 291 1 235 346 0 19 chr6 28812157 28812264 -160467290 + MIR SINE MIR 152 256 -6 1729 171 3 46 chr6 28812272 28812577 -160466977 + AluJb SINE Alu 6 297 -15 1776 165 20 3 chr6 28812587 28812884 -160466670 + MER1A DNA MER1_type 1 302 -227 1457 115 21 8 chr6 28812977 28813211 -160466343 + MER1A DNA MER1_type 297 533 0 243 231 10 58 chr6 28813300 28813404 -160466150 + T-rich Low_complexity Low_complexity 4 102 0 1719 170 87 3 chr6 28814245 28814556 -160464998 - MER1B DNA MER1_type 0 337 1 1506 211 79 67 chr6 28814570 28815064 -160464490 - MLT1D LTR MaLR 0 505 6 475 179 104 0 chr6 28815075 28815181 -160464373 + MER99 DNA DNA 709 825 -3 2617 105 11 5 chr6 28815485 28815858 -160463696 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr6 28815940 28815966 -160463588 + (A)n Simple_repeat Simple_repeat 1 26 0 272 289 79 0 chr6 28816111 28816225 -160463329 + L1ME3A LINE L1 5510 5632 -538 2074 198 39 108 chr6 28816225 28816553 -160463001 - LTR8 LTR ERV1 0 691 342 1584 99 38 0 chr6 28816553 28816764 -160462790 - AluSg/x SINE Alu -9 301 83 243 0 0 0 chr6 28816770 28816797 -160462757 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2074 198 39 108 chr6 28816797 28817203 -160462351 - LTR8 LTR ERV1 -354 337 1 446 332 25 21 chr6 28817225 28817508 -160462046 + L1ME3A LINE L1 5657 5940 -230 198 167 0 0 chr6 28817508 28817544 -160462010 + (CATA)n Simple_repeat Simple_repeat 3 38 0 1070 172 25 17 chr6 28817546 28817907 -160461647 + MLT2A2 LTR ERVL 190 453 0 254 270 17 23 chr6 28817938 28818112 -160461442 + (CATA)n Simple_repeat Simple_repeat 3 175 0 195 229 24 24 chr6 28818150 28818233 -160461321 + (CATA)n Simple_repeat Simple_repeat 1 83 0 235 303 17 0 chr6 28818256 28818431 -160461123 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 243 173 0 0 chr6 28818396 28818448 -160461106 + (CATG)n Simple_repeat Simple_repeat 1 52 0 331 301 17 16 chr6 28818505 28818757 -160460797 + (CATATA)n Simple_repeat Simple_repeat 1 252 0 329 267 17 12 chr6 28818757 28818929 -160460625 + (CATA)n Simple_repeat Simple_repeat 4 176 0 289 301 78 0 chr6 28820460 28820563 -160458991 - MIR SINE MIR -108 154 44 185 94 31 0 chr6 28820828 28820860 -160458694 + (CA)n Simple_repeat Simple_repeat 2 34 0 32 26 0 0 chr6 28820863 28820902 -160458652 + AT_rich Low_complexity Low_complexity 1 39 0 530 110 0 0 chr6 28821195 28821268 -160458286 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2067 273 81 37 chr6 28821936 28823844 -160455710 + L1MDa LINE L1 1005 3034 -3506 224 265 0 0 chr6 28824126 28824175 -160455379 + L2 LINE L2 3220 3268 -4 1571 168 32 0 chr6 28824310 28824560 -160454994 + AluSx SINE Alu 23 280 -32 342 0 0 0 chr6 28824560 28824598 -160454956 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2191 125 0 0 chr6 28824608 28824913 -160454641 + AluSx SINE Alu 1 305 -7 220 344 32 34 chr6 28824991 28825145 -160454409 + MIR SINE MIR 3 149 -77 272 265 0 0 chr6 28825778 28825846 -160453708 + tRNA-Met-e tRNA tRNA 6 73 -2 679 60 30 0 chr6 28825968 28826068 -160453486 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 344 321 47 54 chr6 28826255 28826551 -160453003 - L2 LINE L2 -1 3312 3019 235 301 41 0 chr6 28827448 28827521 -160452033 - MIR SINE MIR -108 154 79 21 0 0 0 chr6 28828435 28828456 -160451098 + AT_rich Low_complexity Low_complexity 1 21 0 291 301 78 0 chr6 28828676 28828779 -160450775 - MIR SINE MIR -108 154 44 24 32 0 0 chr6 28828779 28828810 -160450744 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr6 28829449 28829483 -160450071 + (CA)n Simple_repeat Simple_repeat 1 34 0 194 0 39 0 chr6 28829936 28829962 -160449592 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 51 0 0 chr6 28829967 28830006 -160449548 + AT_rich Low_complexity Low_complexity 1 39 0 573 96 0 0 chr6 28830301 28830374 -160449180 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2632 255 73 52 chr6 28831042 28832966 -160446588 + L1MDa LINE L1 1005 3034 -3506 242 284 78 29 chr6 28833217 28833319 -160446235 + L2 LINE L2 3162 3268 -4 1673 180 28 0 chr6 28833440 28833723 -160445831 + AluJb SINE Alu 1 291 -21 2138 123 0 0 chr6 28833735 28834035 -160445519 + AluSx SINE Alu 1 300 -12 267 290 63 35 chr6 28834118 28834269 -160445285 + MIR3 SINE MIR 3 149 -77 405 0 0 0 chr6 28834695 28834740 -160444814 + (CA)n Simple_repeat Simple_repeat 2 46 0 553 110 0 0 chr6 28835076 28835149 -160444405 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 264 152 65 0 chr6 28837162 28837208 -160442346 + MER66A LTR ERV1 289 337 -141 246 147 147 15 chr6 28837809 28837877 -160441677 + L2 LINE L2 3236 3312 -1 319 194 48 0 chr6 28838508 28838570 -160440984 - tRNA-His-CAC tRNA tRNA -10 65 1 290 336 154 5 chr6 28838955 28839169 -160440385 - L2 LINE L2 -103 3210 2965 23 0 0 0 chr6 28840477 28840500 -160439054 + AT_rich Low_complexity Low_complexity 1 23 0 15731 161 41 34 chr6 28840922 28845289 -160434265 + L1MA8 LINE L1 3314 7707 -3 381 263 0 0 chr6 28845347 28845423 -160434131 + tRNA-Val-GTT tRNA tRNA 1 76 0 313 158 0 0 chr6 28845875 28845932 -160433622 + tRNA-Ala-GCA tRNA tRNA 4 60 -16 1298 133 98 8 chr6 28846455 28846710 -160432844 + L1MB4 LINE L1 5903 6180 0 203 157 20 0 chr6 28847613 28847664 -160431890 + (TA)n Simple_repeat Simple_repeat 2 53 0 618 304 33 0 chr6 28847806 28848076 -160431478 + L1M4 LINE L1 2380 2658 -3488 245 297 16 0 chr6 28848315 28848379 -160431175 + L2 LINE L2 3204 3268 -4 478 135 14 0 chr6 28849307 28849381 -160430173 + tRNA-Met-e tRNA tRNA 1 75 0 245 244 165 35 chr6 28849699 28849814 -160429740 - L2 LINE L2 -1 3312 3183 350 0 44 0 chr6 28850491 28850536 -160429018 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr6 28850652 28850672 -160428882 + (T)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr6 28852337 28852366 -160427188 + (CA)n Simple_repeat Simple_repeat 1 29 0 354 23 0 0 chr6 28852818 28852861 -160426693 + (CA)n Simple_repeat Simple_repeat 2 44 0 553 110 0 0 chr6 28853198 28853271 -160426283 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2553 268 81 45 chr6 28853824 28855870 -160423684 + L1MDb LINE L1 791 2913 -3493 259 289 82 10 chr6 28856118 28856215 -160423339 + L2 LINE L2 3168 3271 -1 1565 163 0 4 chr6 28856333 28856584 -160422970 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28856607 28856678 -160422876 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2074 97 41 17 chr6 28856693 28856983 -160422571 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 28857180 28857202 -160422352 + (A)n Simple_repeat Simple_repeat 1 22 0 1902 120 0 13 chr6 28857208 28857507 -160422047 + AluY SINE Alu 1 295 -16 849 305 27 54 chr6 28857841 28858185 -160421369 + HAL1 LINE L1 461 793 -1714 1925 132 0 17 chr6 28858185 28858506 -160421048 - AluSx SINE Alu 0 316 1 849 305 27 54 chr6 28858506 28858603 -160420951 + HAL1 LINE L1 793 891 -1616 381 226 137 11 chr6 28858676 28858866 -160420688 + HAL1 LINE L1 1050 1263 -1244 1565 163 0 4 chr6 28859007 28859258 -160420296 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28859281 28859352 -160420202 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2047 100 41 17 chr6 28859367 28859657 -160419897 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr6 28859854 28859877 -160419677 + (A)n Simple_repeat Simple_repeat 1 23 0 2348 66 0 10 chr6 28859882 28860187 -160419367 + AluY SINE Alu 1 302 -9 285 265 0 0 chr6 28860872 28860940 -160418614 + tRNA-Met-e tRNA tRNA 6 73 -2 826 143 12 0 chr6 28861071 28861232 -160418322 + CT-rich Low_complexity Low_complexity 2 164 0 272 274 41 0 chr6 28862598 28862671 -160416883 - MIR SINE MIR -108 154 79 378 0 0 0 chr6 28863358 28863400 -160416154 + (CA)n Simple_repeat Simple_repeat 2 43 0 458 164 0 0 chr6 28864158 28864231 -160415323 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2580 254 121 42 chr6 28864811 28866302 -160413252 + L1ME LINE L1 783 2421 -3985 2101 122 0 3 chr6 28866302 28866597 -160412957 + AluSq SINE Alu 1 294 -19 2580 254 121 42 chr6 28866597 28867120 -160412434 + L1ME LINE L1 2421 2902 -3504 255 294 0 0 chr6 28867383 28867451 -160412103 + L2 LINE L2 3204 3271 -1 275 286 0 0 chr6 28868396 28868459 -160411095 + tRNA-Met-e tRNA tRNA 11 73 -2 277 353 25 47 chr6 28868805 28869040 -160410514 - L2 LINE L2 0 3313 3084 687 13 0 0 chr6 28871480 28871555 -160407999 - tRNA-Ile-ATT tRNA tRNA -2 75 1 248 186 0 0 chr6 28872963 28873006 -160406548 - tRNA-His-CAC tRNA tRNA -23 52 10 1188 101 10 10 chr6 28873023 28873221 -160406333 + LTR1 LTR ERV1 54 251 -534 181 297 135 27 chr6 28873736 28873810 -160405744 + MIR SINE MIR 60 141 -67 232 100 0 75 chr6 28873821 28873861 -160405693 + Charlie7 DNA MER1_type 1627 1663 -949 2659 42 0 6 chr6 28874169 28874482 -160405072 + AluY SINE Alu 1 311 0 267 318 45 26 chr6 28874565 28874719 -160404835 + MER110 LTR ERV1 320 476 -15 664 376 55 16 chr6 28875833 28876344 -160403210 + ERVL LTR ERVL 2547 3077 -2687 3828 234 68 70 chr6 28876357 28878056 -160401498 + L1ME LINE L1 4002 5690 -734 485 151 0 0 chr6 28878530 28878603 -160400951 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 524 82 0 0 chr6 28880363 28880436 -160399118 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 616 87 0 19 chr6 28881144 28881247 -160398307 + (TTC)n Simple_repeat Simple_repeat 2 102 0 431 282 22 47 chr6 28881648 28881862 -160397692 + L1MC5 LINE L1 7258 7465 -496 1486 157 20 49 chr6 28881862 28882168 -160397386 + L1MC2 LINE L1 6048 6344 0 431 282 22 47 chr6 28882168 28882230 -160397324 + L1MC5 LINE L1 7465 7527 -434 1681 77 122 28 chr6 28882954 28883201 -160396353 + AluSx SINE Alu 40 309 -3 183 80 0 0 chr6 28884150 28884175 -160395379 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 450 113 14 0 chr6 28885203 28885274 -160394280 - tRNA-Met-e tRNA tRNA -3 72 1 219 132 0 0 chr6 28885558 28885596 -160393958 + L2 LINE L2 3234 3271 -1 180 0 0 0 chr6 28885785 28885805 -160393749 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 250 241 188 18 chr6 28885820 28885932 -160393622 - MIR SINE MIR -109 153 23 185 231 0 19 chr6 28886032 28886084 -160393470 - L2 LINE L2 -5 3267 3217 918 170 143 30 chr6 28886380 28886610 -160392944 - MLT1B LTR MaLR 0 390 135 340 102 20 0 chr6 28886961 28887010 -160392544 + MSTB1 LTR MaLR 380 429 -3 1586 150 86 11 chr6 28888110 28888390 -160391164 - MSTA LTR MaLR 0 428 128 2775 82 3 0 chr6 28888394 28888747 -160390807 + LTR66 LTR ERVL 70 423 -187 1750 141 0 0 chr6 28888747 28889018 -160390536 + AluSx SINE Alu 36 306 0 1183 62 41 88 chr6 28889149 28889343 -160390211 + LTR66 LTR ERVL 426 610 0 290 239 12 43 chr6 28889427 28889590 -160389964 + (TATG)n Simple_repeat Simple_repeat 2 159 0 219 280 13 13 chr6 28889655 28889805 -160389749 + (TATG)n Simple_repeat Simple_repeat 3 152 0 189 171 0 0 chr6 28889897 28889932 -160389622 + (CATG)n Simple_repeat Simple_repeat 1 35 0 311 344 31 12 chr6 28889966 28890126 -160389428 + (CATG)n Simple_repeat Simple_repeat 2 164 0 460 291 17 23 chr6 28890151 28890326 -160389228 + (CATA)n Simple_repeat Simple_repeat 2 175 0 249 261 0 0 chr6 28890394 28890482 -160389072 + (CATA)n Simple_repeat Simple_repeat 4 91 0 358 358 6 11 chr6 28890542 28890718 -160388836 + (TATG)n Simple_repeat Simple_repeat 3 177 0 * 385 350 18 0 chr6 28890603 28890766 -160388788 + (CATG)n Simple_repeat Simple_repeat 3 168 0 339 363 0 0 chr6 28890710 28890834 -160388720 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 * 985 157 143 30 chr6 28891753 28891983 -160387571 + MLT1B LTR MaLR 135 390 0 243 298 177 11 chr6 28892433 28892560 -160386994 + MIR SINE MIR 23 128 -134 225 0 0 0 chr6 28892560 28892585 -160386969 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 243 298 177 11 chr6 28892585 28892638 -160386916 + MIR SINE MIR 128 233 -29 205 158 0 0 chr6 28892773 28892811 -160386743 - L2 LINE L2 -1 3271 3234 450 113 14 0 chr6 28893095 28893166 -160386388 + tRNA-Met-e tRNA tRNA 1 72 -3 5903 130 30 15 chr6 28894505 28895459 -160384095 + LTR5 LTR ERVK 1 969 0 1525 106 5 32 chr6 28896182 28896400 -160383154 - AluSx SINE Alu -61 251 40 444 278 22 47 chr6 28897122 28897184 -160382370 - L1MC5 LINE L1 -434 7527 7465 1508 154 20 46 chr6 28897184 28897489 -160382065 - L1MC2 LINE L1 0 6344 6048 444 278 22 47 chr6 28897489 28897703 -160381851 - L1MC5 LINE L1 -496 7465 7258 211 218 0 18 chr6 28897789 28897844 -160381710 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1126 56 6 6 chr6 28898100 28898260 -160381294 + (GAA)n Simple_repeat Simple_repeat 2 161 0 191 323 0 0 chr6 28898611 28898673 -160380881 - L2 LINE L2 -84 3229 3168 492 110 0 0 chr6 28899005 28899078 -160380476 - tRNA-Ala-GCA tRNA tRNA -3 73 1 429 178 0 0 chr6 28899717 28899790 -160379764 - tRNA-Ala-GCA tRNA tRNA -3 73 1 3821 243 69 55 chr6 28900269 28901941 -160377613 - L1ME LINE L1 -734 5430 3742 671 373 55 16 chr6 28901954 28902466 -160377088 - ERVL LTR ERVL -2687 3077 2546 205 339 107 18 chr6 28904091 28904203 -160375351 - MIR3 SINE MIR -27 181 60 1262 101 10 10 chr6 28904699 28904897 -160374657 - LTR1 LTR ERV1 -534 251 54 251 139 0 0 chr6 28904921 28904957 -160374597 + tRNA-His-CAC tRNA tRNA 17 52 -23 623 40 0 0 chr6 28906358 28906433 -160373121 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 8116 10 0 0 chr6 28906511 28907765 -160371789 + L1PA2 LINE L1 4902 6155 0 1745 254 28 18 chr6 28960287 28960787 -160318767 + MLT1D LTR MaLR 1 505 0 2388 85 0 0 chr6 28960967 28961273 -160318281 - AluSx SINE Alu -6 306 1 215 210 32 16 chr6 28961675 28961737 -160317817 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 7378 12 0 0 chr6 28961805 28962641 -160316913 - L1PA2 LINE L1 -2 6153 5318 29 84 0 0 chr6 28963371 28963442 -160316112 + AT_rich Low_complexity Low_complexity 1 71 0 468 322 9 57 chr6 28964152 28964363 -160315191 + MIR SINE MIR 2 202 -60 183 129 0 0 chr6 28964410 28964441 -160315113 + (GA)n Simple_repeat Simple_repeat 2 32 0 244 292 0 0 chr6 28964559 28964624 -160314930 - LTR16A1 LTR ERVL -2 455 391 1987 198 31 8 chr6 28965707 28966091 -160313463 - MSTD LTR MaLR -3 393 1 622 143 0 42 chr6 28966833 28966952 -160312602 + L1PA14 LINE L1 6044 6157 -4 47 53 0 0 chr6 28967028 28967103 -160312451 + AT_rich Low_complexity Low_complexity 1 75 0 33 25 0 0 chr6 28967312 28967352 -160312202 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr6 28968323 28968364 -160311190 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 28968435 28968455 -160311099 + (CA)n Simple_repeat Simple_repeat 2 21 0 1857 218 31 0 chr6 28968600 28968958 -160310596 + MLT2B3 LTR ERVL 133 501 -53 240 35 0 0 chr6 28968965 28968994 -160310560 + (TC)n Simple_repeat Simple_repeat 2 30 0 225 154 0 0 chr6 28968995 28969034 -160310520 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr6 28969218 28969250 -160310304 + AT_rich Low_complexity Low_complexity 1 32 0 364 203 0 0 chr6 28969594 28969658 -160309896 - U4 snRNA snRNA -81 64 1 25 31 0 0 chr6 28969728 28969760 -160309794 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr6 28971891 28971926 -160307628 + (TG)n Simple_repeat Simple_repeat 2 36 0 670 333 108 8 chr6 28971981 28972332 -160307222 - LTR16B LTR ERVL -31 433 48 1008 207 42 93 chr6 28972455 28972840 -160306714 + MLT1A1 LTR MaLR 1 428 0 1349 184 4 50 chr6 28972944 28973335 -160306219 - L1M LINE L1 -740 5428 5067 * 3927 195 26 32 chr6 28973318 28974230 -160305324 + L1MA10 LINE L1 5420 6326 -8 190 319 78 58 chr6 28974435 28974626 -160304928 - L3 LINE CR1 -10 1567 1373 25 51 0 0 chr6 28974961 28975000 -160304554 + AT_rich Low_complexity Low_complexity 1 39 0 248 273 0 0 chr6 28975106 28975161 -160304393 - MLT1I LTR MaLR 0 409 355 283 316 38 23 chr6 28975292 28975425 -160304129 - MLT1I LTR MaLR -270 139 5 290 352 66 28 chr6 28975428 28975641 -160303913 - L3 LINE CR1 -921 656 436 1596 137 30 58 chr6 28975723 28976052 -160303502 - MER44D DNA MER2_type -12 597 8 352 302 39 8 chr6 28976128 28976257 -160303297 + MIR SINE MIR 81 213 -49 318 350 50 17 chr6 28976317 28976577 -160302977 - L1MC4a LINE L1 -303 5818 5637 23 33 0 0 chr6 28976778 28976808 -160302746 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 28976893 28976921 -160302633 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 28977216 28977245 -160302309 + AT_rich Low_complexity Low_complexity 1 29 0 253 253 77 0 chr6 28977301 28977392 -160302162 + MLT1I LTR MaLR 312 409 0 1798 127 0 4 chr6 28977691 28977959 -160301595 - AluSg SINE Alu -43 267 1 423 74 0 0 chr6 28977970 28978024 -160301530 - Alu SINE Alu -258 60 7 2330 76 13 7 chr6 28978424 28978728 -160300826 - AluY SINE Alu -3 308 3 2568 26 3 0 chr6 28979499 28979806 -160299748 + L1PA2 LINE L1 5846 6153 -2 1461 180 102 0 chr6 28979993 28980249 -160299305 + AluJb SINE Alu 1 282 -30 279 0 0 0 chr6 28980249 28980280 -160299274 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1746 169 21 0 chr6 28980303 28980587 -160298967 + AluJb SINE Alu 1 290 -22 516 200 104 0 chr6 28980596 28980711 -160298843 - MER3 DNA MER1_type -61 148 22 1586 184 14 24 chr6 28980713 28980870 -160298684 - AluJb SINE Alu -21 291 137 2249 106 0 7 chr6 28980870 28981172 -160298382 - AluSg SINE Alu -10 300 1 1586 184 14 24 chr6 28981172 28981189 -160298365 - AluJb SINE Alu -175 137 2 735 169 34 0 chr6 28981189 28981307 -160298247 - FLAM_C SINE Alu -10 123 2 1826 152 3 48 chr6 28981370 28981679 -160297875 + AluSx SINE Alu 1 295 -17 2194 128 3 0 chr6 28982007 28982313 -160297241 + AluSx SINE Alu 1 307 -5 182 355 76 72 chr6 28982352 28982628 -160296926 - L2 LINE L2 -3 3269 2993 1521 167 89 3 chr6 28982634 28982916 -160296638 + AluJo SINE Alu 1 306 -6 800 161 0 8 chr6 28982921 28983051 -160296503 + FLAM_C SINE Alu 7 135 -8 1740 179 0 0 chr6 28983291 28983588 -160295966 + AluJo SINE Alu 1 297 -15 1115 163 0 30 chr6 28984128 28984331 -160295223 + AluJo SINE Alu 24 220 -92 257 163 0 20 chr6 28984331 28984380 -160295174 + FLAM SINE Alu 86 133 0 486 179 84 21 chr6 28984720 28984815 -160294739 - AluSg/x SINE Alu -14 296 196 1220 118 0 0 chr6 28984816 28984977 -160294577 + AluSg/x SINE Alu 137 297 -13 2045 141 10 19 chr6 28984989 28985302 -160294252 + AluJo SINE Alu 3 312 0 230 283 111 20 chr6 28985312 28985411 -160294143 + MER5A DNA MER1_type 74 181 -8 * 269 211 0 0 chr6 28985403 28985460 -160294094 + MIR3 SINE MIR 147 203 -5 910 102 0 0 chr6 28985618 28985736 -160293818 + FLAM_C SINE Alu 1 118 -15 2029 154 3 0 chr6 28986056 28986403 -160293151 + AluSx SINE Alu 1 348 0 1486 174 43 46 chr6 28986801 28986924 -160292630 + AluJo SINE Alu 2 124 -188 1769 121 28 35 chr6 28986924 28987214 -160292340 + AluSg SINE Alu 1 288 -22 1486 174 43 46 chr6 28987214 28987395 -160292159 + AluJo SINE Alu 124 305 -7 257 268 179 18 chr6 28987458 28987570 -160291984 - L2 LINE L2 -205 3067 2938 2081 116 7 23 chr6 28987619 28987929 -160291625 - AluSx SINE Alu -7 305 1 1580 155 37 51 chr6 28988753 28988880 -160290674 + AluJo SINE Alu 1 128 -184 2011 128 10 0 chr6 28988880 28989169 -160290385 - AluSx SINE Alu -20 292 1 1580 155 37 51 chr6 28989169 28989337 -160290217 + AluJo SINE Alu 128 292 -20 279 0 0 0 chr6 28989340 28989371 -160290183 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2326 106 0 0 chr6 28989816 28990119 -160289435 - AluSg SINE Alu -7 303 1 1856 119 0 22 chr6 28990142 28990419 -160289135 - AluSx SINE Alu -3 309 39 1557 97 32 3 chr6 28990936 28991254 -160288300 + L1P4 LINE L1 5161 5485 -676 2267 95 0 7 chr6 28991255 28991551 -160288003 + AluSx SINE Alu 2 295 -17 2066 217 135 62 chr6 28991731 28991880 -160287674 + MER82 DNA MER2_type 1 138 -515 2095 114 0 34 chr6 28991880 28992178 -160287376 + AluSx SINE Alu 1 288 -24 2066 217 135 62 chr6 28992178 28992637 -160286917 + MER82 DNA MER2_type 138 653 0 247 313 30 30 chr6 28992829 28992963 -160286591 + MLT1H LTR MaLR 29 162 -387 949 150 17 56 chr6 28993306 28993486 -160286068 - FAM SINE Alu -5 44 1 416 252 50 8 chr6 28993547 28993666 -160285888 + MLT1G1 LTR MaLR 16 139 -456 2501 118 25 6 chr6 28993765 28994122 -160285432 + THE1B LTR MaLR 1 364 0 9831 101 60 42 chr6 28994123 28995668 -160283886 + THE1B-int LTR MaLR 2 1574 -6 1322 113 49 5 chr6 28995675 28995878 -160283676 + THE1B LTR MaLR 3 214 -150 799 177 15 0 chr6 28995887 28996017 -160283537 - FLAM_C SINE Alu -1 132 1 628 157 0 0 chr6 28996019 28996121 -160283433 - AluSp/q SINE Alu -2 311 210 202 130 0 65 chr6 29000746 29000792 -160278762 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 21 0 0 0 chr6 29001342 29001363 -160278191 + AT_rich Low_complexity Low_complexity 1 21 0 271 221 154 58 chr6 29001799 29001903 -160277651 + L2 LINE L2 3104 3217 -96 1710 171 66 0 chr6 29001909 29002213 -160277341 + MER2 DNA MER2_type 1 324 -21 1334 131 91 0 chr6 29002213 29002434 -160277120 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr6 29002450 29002480 -160277074 + AT_rich Low_complexity Low_complexity 1 30 0 1657 199 12 93 chr6 29002717 29002761 -160276793 + MLT1A2 LTR MaLR 1 47 -327 2519 58 3 13 chr6 29002761 29003069 -160276485 + AluY SINE Alu 1 305 -6 1657 199 12 93 chr6 29003069 29003362 -160276192 + MLT1A2 LTR MaLR 47 302 -72 1976 156 30 0 chr6 29003362 29003664 -160275890 - AluSx SINE Alu -1 311 1 1657 199 12 93 chr6 29003664 29003732 -160275822 + MLT1A2 LTR MaLR 302 374 0 1075 162 81 20 chr6 29003752 29003883 -160275671 + MER3 DNA MER1_type 1 149 -60 2552 53 0 0 chr6 29003883 29004182 -160275372 - AluY SINE Alu -12 299 1 1075 162 81 20 chr6 29004182 29004247 -160275307 + MER3 DNA MER1_type 149 209 0 636 215 107 51 chr6 29004745 29004944 -160274610 - MLT1F LTR MaLR 0 626 334 1436 155 38 91 chr6 29004945 29005177 -160274377 - MLT1A1 LTR MaLR 0 365 155 2181 117 0 25 chr6 29005177 29005494 -160274060 + AluSg SINE Alu 1 309 -1 1436 155 38 91 chr6 29005494 29005602 -160273952 - MLT1A1 LTR MaLR -210 155 43 541 293 13 0 chr6 29005810 29005960 -160273594 - MLT1F LTR MaLR -400 167 16 383 375 34 21 chr6 29007187 29007478 -160272076 + L2 LINE L2 1978 2272 -1042 21 0 0 0 chr6 29007883 29007904 -160271650 + AT_rich Low_complexity Low_complexity 1 21 0 256 302 94 9 chr6 29008299 29008405 -160271149 + L2 LINE L2 3158 3272 0 298 296 0 0 chr6 29010063 29010161 -160269393 + MIR SINE MIR 90 187 -75 2065 210 17 64 chr6 29010239 29010632 -160268922 + L1M2 LINE L1 2528 2938 -3910 2241 125 0 0 chr6 29010632 29010936 -160268618 + AluSg SINE Alu 1 304 -6 2065 210 17 64 chr6 29010936 29011452 -160268102 + L1M2 LINE L1 2938 3392 -3456 2696 191 47 2 chr6 29011452 29011980 -160267574 + L1PB4 LINE L1 5604 6155 -1 3398 228 61 19 chr6 29012138 29012566 -160266988 + L1MC3 LINE L1 6150 6559 -1226 2088 164 123 5 chr6 29012566 29012949 -160266605 + MSTA LTR MaLR 1 428 0 3398 228 61 19 chr6 29012949 29013451 -160266103 + L1MC3 LINE L1 6559 7119 -666 600 229 23 34 chr6 29013515 29013690 -160265864 + MER104 DNA Tc2 7 179 -1 360 219 0 0 chr6 29014505 29014587 -160264967 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 2361 61 0 10 chr6 29015081 29015377 -160264177 - AluY SINE Alu -18 293 1 588 232 7 53 chr6 29015688 29015839 -160263715 - MER20 DNA MER1_type -52 167 24 698 260 25 20 chr6 29016204 29016408 -160263146 + MER20 DNA MER1_type 8 212 -7 642 167 40 8 chr6 29016598 29016724 -160262830 + L1PA13 LINE L1 6033 6162 -1 26 30 0 0 chr6 29016790 29016823 -160262731 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 29017384 29017417 -160262137 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr6 29018096 29018120 -160261434 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 29018181 29018211 -160261343 + AT_rich Low_complexity Low_complexity 1 30 0 3707 44 16 0 chr6 29018691 29019119 -160260435 - L1PA3 LINE L1 0 6155 5721 7165 23 0 0 chr6 29019119 29020278 -160259276 + L1PA3 LINE L1 4563 5721 -434 432 268 0 0 chr6 29020448 29020545 -160259009 + Tigger3(Golem) DNA MER2_type 2 98 -2931 436 238 0 0 chr6 29020558 29020642 -160258912 + Tigger3(Golem) DNA MER2_type 2954 3037 0 252 216 0 0 chr6 29020988 29021039 -160258515 + L1MC4 LINE L1 6653 6703 -1339 230 191 0 0 chr6 29021042 29021089 -160258465 + LTR66 LTR ERVL 392 438 -172 297 240 0 0 chr6 29021090 29021165 -160258389 + (TA)n Simple_repeat Simple_repeat 2 76 0 1767 132 59 0 chr6 29021165 29021438 -160258116 - AluSq SINE Alu -22 291 3 28 48 0 0 chr6 29021797 29021839 -160257715 + AT_rich Low_complexity Low_complexity 1 42 0 1354 214 50 10 chr6 29022964 29023263 -160256291 - AluJo SINE Alu -1 311 1 287 149 0 60 chr6 29024573 29024640 -160254914 + MADE1 DNA Mariner 1 63 -17 274 295 169 38 chr6 29024805 29025066 -160254488 - MLT1J LTR MaLR -210 301 7 309 243 0 162 chr6 29027138 29027311 -160252243 - L2 LINE L2 -4 3309 3165 407 78 16 0 chr6 29027823 29027887 -160251667 + (CA)n Simple_repeat Simple_repeat 1 65 0 544 279 53 33 chr6 29028190 29028434 -160251120 - LTR16A LTR ERVL -184 266 18 28 71 0 0 chr6 29029797 29029853 -160249701 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr6 29030180 29030209 -160249345 + AT_rich Low_complexity Low_complexity 1 29 0 6623 31 0 5 chr6 29030367 29031110 -160248444 - L1PA3 LINE L1 -3 6152 5414 11015 41 1 0 chr6 29031110 29032454 -160247100 + L1M1 LINE L1 4101 5448 -743 218 331 66 22 chr6 29033034 29033170 -160246384 + L2 LINE L2 2122 2263 -1051 21 0 0 0 chr6 29033246 29033267 -160246287 + AT_rich Low_complexity Low_complexity 1 21 0 1021 144 98 90 chr6 29033951 29034207 -160245347 - Tigger2 DNA MER2_type -10 2708 2451 3797 186 35 0 chr6 29034261 29034993 -160244561 - Tigger2 DNA MER2_type -1959 759 2 1358 276 95 84 chr6 29035091 29036608 -160242946 + MER110-int LTR ERV1 1952 3590 -1057 715 264 98 8 chr6 29036815 29037069 -160242485 + MLT1D LTR MaLR 1 277 -228 381 300 0 0 chr6 29037166 29037276 -160242278 + MLT1A2 LTR MaLR 51 160 -214 918 197 11 26 chr6 29037328 29037539 -160242015 + MLT1A2 LTR MaLR 182 374 0 * 928 283 9 0 chr6 29037539 29037768 -160241786 + MLT1D LTR MaLR 275 505 0 655 216 120 0 chr6 29037920 29038126 -160241428 - MER33 DNA MER1_type -264 60 1 180 0 0 0 chr6 29038165 29038185 -160241369 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 436 325 48 10 chr6 29038336 29038542 -160241012 + MER110 LTR ERV1 242 455 -36 1195 186 154 7 chr6 29039061 29039295 -160240259 + MER47A DNA MER2_type 1 292 -2031 12616 60 6 1 chr6 29039295 29041671 -160237883 - L1PA6 LINE L1 -4 6150 3742 1195 186 154 7 chr6 29041671 29041742 -160237812 + MER47A DNA MER2_type 292 351 -15 483 63 0 0 chr6 29041813 29041876 -160237678 + (CA)n Simple_repeat Simple_repeat 2 64 0 1820 139 158 13 chr6 29042645 29043019 -160236535 + MSTA LTR MaLR 1 428 0 8890 158 8 35 chr6 29043021 29044643 -160234911 + MSTA-int LTR MaLR 3 1580 0 1624 178 131 18 chr6 29044645 29045027 -160234527 + MSTA LTR MaLR 3 427 -1 1583 251 48 15 chr6 29045471 29045926 -160233628 - MLT1D LTR MaLR 0 505 36 315 310 9 17 chr6 29046202 29046318 -160233236 + MIR SINE MIR 124 238 -24 749 269 28 9 chr6 29047512 29047724 -160231830 + MER20 DNA MER1_type 2 217 -2 183 80 0 0 chr6 29047762 29047787 -160231767 + (T)n Simple_repeat Simple_repeat 1 25 0 273 373 88 28 chr6 29048057 29048456 -160231098 - MLT1J1 LTR MaLR -3 443 21 1105 113 6 0 chr6 29048481 29048641 -160230913 + AluSg/x SINE Alu 151 311 -1 2125 109 10 6 chr6 29048789 29049100 -160230454 - AluSq SINE Alu -1 312 1 431 359 67 10 chr6 29049791 29050000 -160229554 + L1PA16 LINE L1 790 1010 -6564 12357 240 27 20 chr6 29050124 29053853 -160225701 + L1PA16 LINE L1 2182 5884 -1720 1050 185 132 57 chr6 29053853 29054118 -160225436 + AluJo SINE Alu 2 286 -16 1111 67 0 12 chr6 29054118 29054282 -160225272 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 12357 240 27 20 chr6 29054282 29055108 -160224446 + L1PA16 LINE L1 5884 6775 -829 1768 78 19 109 chr6 29055108 29055429 -160224125 + L1PA10 LINE L1 5876 6167 -1 12357 240 27 20 chr6 29055429 29056161 -160223393 + L1PA16 LINE L1 6775 7500 -104 2021 186 108 48 chr6 29056561 29057653 -160221901 - pTR5 LTR ERV1 -259 2179 743 397 322 72 15 chr6 29057973 29058237 -160221317 - MER110 LTR ERV1 -26 465 187 266 224 19 112 chr6 29058311 29058418 -160221136 - MER110A LTR ERV1 -298 170 74 326 98 0 16 chr6 29058617 29058678 -160220876 + (TG)n Simple_repeat Simple_repeat 2 61 0 419 141 13 0 chr6 29059629 29059707 -160219847 + (TA)n Simple_repeat Simple_repeat 1 79 0 21 0 0 0 chr6 29060421 29060442 -160219112 + AT_rich Low_complexity Low_complexity 1 21 0 354 308 70 69 chr6 29062147 29062521 -160217033 + L1ME3A LINE L1 4348 4722 -1424 245 270 40 10 chr6 29062764 29062864 -160216690 + L1ME3A LINE L1 5341 5443 -719 543 316 58 69 chr6 29062923 29063362 -160216192 + L1ME3A LINE L1 5479 5941 -223 233 298 112 42 chr6 29063511 29063796 -160215758 + L1MC/D LINE L1 5293 5597 -2211 402 74 0 0 chr6 29064435 29064489 -160215065 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 29064724 29064745 -160214809 + AT_rich Low_complexity Low_complexity 1 21 0 1927 148 7 3 chr6 29064888 29065193 -160214361 + AluSx SINE Alu 1 306 -6 185 0 40 0 chr6 29065616 29065641 -160213913 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr6 29065734 29065757 -160213797 + AT_rich Low_complexity Low_complexity 1 23 0 1316 269 89 44 chr6 29065990 29066620 -160212934 + L1ME2 LINE L1 3855 4556 -1590 2475 141 24 12 chr6 29066620 29067039 -160212515 + MSTA LTR MaLR 5 428 0 1316 269 89 44 chr6 29067039 29067501 -160212053 + L1ME2 LINE L1 4556 4996 -1150 31 96 0 0 chr6 29067648 29067742 -160211812 + AT_rich Low_complexity Low_complexity 1 94 0 809 227 173 27 chr6 29067797 29068172 -160211382 + L1ME2 LINE L1 5329 5758 -406 606 210 167 21 chr6 29068177 29068363 -160211191 - MER20 DNA MER1_type -6 213 1 528 241 49 15 chr6 29068376 29068579 -160210975 + L1ME2 LINE L1 5768 5977 -187 286 292 26 0 chr6 29068626 29068739 -160210815 + L1MA10 LINE L1 6215 6330 -4 586 237 97 22 chr6 29068743 29068887 -160210667 + LTR37B LTR ERV1 221 390 -78 1252 234 37 68 chr6 29068887 29069369 -160210185 - MLT1C LTR MaLR 0 467 1 586 237 97 22 chr6 29069369 29069452 -160210102 + LTR37B LTR ERV1 390 465 -3 438 210 68 31 chr6 29069686 29069848 -160209706 - L1M4 LINE L1 -2163 3983 3816 29 78 0 0 chr6 29070648 29070712 -160208842 + AT_rich Low_complexity Low_complexity 1 64 0 38 39 0 0 chr6 29070816 29070868 -160208686 + AT_rich Low_complexity Low_complexity 1 52 0 206 300 0 0 chr6 29071846 29071896 -160207658 - MER5A DNA MER1_type -87 102 53 225 233 151 68 chr6 29072706 29072779 -160206775 - MER2 DNA MER2_type 0 345 267 933 153 8 115 chr6 29072826 29073061 -160206493 - MER2 DNA MER2_type -135 210 1 201 74 0 0 chr6 29073393 29073420 -160206134 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 232 246 132 53 chr6 29073729 29073843 -160205711 + L2 LINE L2 3158 3280 -33 25 0 0 0 chr6 29074377 29074402 -160205152 + AT_rich Low_complexity Low_complexity 1 25 0 237 335 26 26 chr6 29074989 29075144 -160204410 - L1MEc LINE L1 -4723 1673 1519 34 24 0 0 chr6 29076967 29077008 -160202546 + AT_rich Low_complexity Low_complexity 1 41 0 275 274 0 20 chr6 29077032 29077134 -160202420 + T-rich Low_complexity Low_complexity 1 100 0 235 359 32 19 chr6 29077361 29077517 -160202037 + L2 LINE L2 2431 2588 -726 201 323 71 40 chr6 29077529 29077628 -160201926 - L2 LINE L2 -852 2462 2361 * 392 338 98 26 chr6 29077626 29077931 -160201623 + L2 LINE L2 2622 2948 -366 287 341 123 6 chr6 29078069 29078248 -160201306 + L2 LINE L2 3114 3313 0 247 372 0 0 chr6 29079072 29079158 -160200396 + L2 LINE L2 2992 3077 -195 726 133 7 14 chr6 29079795 29079938 -160199616 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 255 229 64 0 chr6 29079986 29080095 -160199459 + (TA)n Simple_repeat Simple_repeat 1 116 0 608 22 44 0 chr6 29080790 29080880 -160198674 + (CA)n Simple_repeat Simple_repeat 2 95 0 332 274 112 56 chr6 29081068 29081445 -160198109 - L1MC4 LINE L1 -252 7790 7290 22 0 0 0 chr6 29082899 29082921 -160196633 + AT_rich Low_complexity Low_complexity 1 22 0 5782 94 23 19 chr6 29083063 29084602 -160194952 + L1PA8A LINE L1 4592 6131 0 2466 260 49 54 chr6 29084989 29086657 -160192897 - MER41-int LTR ERV1 0 4871 3355 1883 191 47 29 chr6 29086639 29087188 -160192366 - MER41-int LTR ERV1 -1112 3824 3266 * 3580 91 5 62 chr6 29087703 29087886 -160191668 + L1PB1 LINE L1 5600 5792 -359 267 31 0 0 chr6 29087886 29087918 -160191636 + (TG)n Simple_repeat Simple_repeat 1 32 0 3580 91 5 62 chr6 29087918 29088318 -160191236 + L1PB1 LINE L1 5792 6150 -1 1189 161 109 123 chr6 29090844 29091403 -160188151 - MER41-int LTR ERV1 -1755 4576 4026 5210 120 31 10 chr6 29091464 29092337 -160187217 - L1PA15 LINE L1 0 6165 5275 1632 278 45 53 chr6 29092339 29093091 -160186463 - L1PA12 LINE L1 -6834 747 2 373 227 18 9 chr6 29093098 29093208 -160186346 - MER41-int LTR ERV1 -2345 2591 2481 * 569 237 75 98 chr6 29093206 29094634 -160184920 - MER41-int LTR ERV1 -2550 2980 1161 249 196 196 9 chr6 29094686 29094798 -160184756 - MER34C LTR ERV1 -293 292 160 440 220 0 0 chr6 29094800 29094900 -160184654 - MER41-int LTR ERV1 -4133 990 891 580 278 108 43 chr6 29095167 29095292 -160184262 - MER65A LTR ERV1 0 445 330 2068 131 150 5 chr6 29095292 29095666 -160183888 - MSTA LTR MaLR 0 428 1 580 278 108 43 chr6 29095666 29095958 -160183596 - MER65A LTR ERV1 -115 330 1 2277 112 3 0 chr6 29096018 29096330 -160183224 + AluSp SINE Alu 1 313 0 496 243 90 35 chr6 29097046 29097301 -160182253 + MER20B DNA MER1_type 238 506 -277 252 86 0 0 chr6 29097495 29097504 -160182050 + (TG)n Simple_repeat Simple_repeat 1 44 0 252 86 0 0 chr6 29097504 29097539 -160182015 + (TG)n Simple_repeat Simple_repeat 2 36 0 1970 148 29 37 chr6 29097644 29098022 -160181532 - THE1C LTR MaLR 0 375 1 1873 179 102 8 chr6 29098054 29098445 -160181109 + MSTA LTR MaLR 1 428 0 618 184 202 83 chr6 29098515 29098907 -160180647 + MER31B LTR ERV1 1 514 0 267 31 0 0 chr6 29099829 29099861 -160179693 + (GA)n Simple_repeat Simple_repeat 1 32 0 722 245 55 10 chr6 29099899 29100099 -160179455 - MER58A DNA MER1_type -12 212 4 348 279 152 44 chr6 29100157 29100315 -160179239 - MER5B DNA MER1_type -3 175 1 229 318 73 9 chr6 29100368 29100478 -160179076 - L2 LINE L2 -2344 970 854 814 259 138 56 chr6 29100531 29101047 -160178507 + MLT1F LTR MaLR 3 540 -2 32 91 0 0 chr6 29102446 29102534 -160177020 + AT_rich Low_complexity Low_complexity 1 88 0 2068 139 7 0 chr6 29102614 29102917 -160176637 + AluSx SINE Alu 1 305 -7 209 364 0 0 chr6 29103377 29103443 -160176111 - MIR SINE MIR -38 224 159 1699 145 74 3 chr6 29104174 29104457 -160175097 + AluSx SINE Alu 1 303 -9 5043 214 52 41 chr6 29104489 29106208 -160173346 - L1MCa LINE L1 -2216 4210 2473 787 115 66 93 chr6 29106209 29106392 -160173162 - AluJb SINE Alu -13 299 122 1090 154 75 19 chr6 29106392 29106658 -160172896 - L1MCa LINE L1 -3971 2455 2175 2176 91 16 53 chr6 29106658 29106977 -160172577 - AluSx SINE Alu -5 307 1 3217 264 109 39 chr6 29107049 29108084 -160171470 + L1M3d LINE L1 572 1488 -5165 1910 113 4 18 chr6 29108084 29108359 -160171195 + AluSx SINE Alu 39 309 -3 3217 264 109 39 chr6 29108359 29108614 -160170940 + L1M3d LINE L1 1488 1724 -4929 1949 120 72 10 chr6 29108614 29108906 -160170648 + AluSx SINE Alu 1 310 -2 23164 80 7 16 chr6 29108913 29112284 -160167270 + L1P LINE L1 11 3349 -2797 369 235 10 20 chr6 29212332 29212430 -160067124 + Charlie1 DNA MER1_type 1799 1895 -866 2290 85 17 0 chr6 29213588 29213882 -160065672 - AluSq SINE Alu -14 299 1 451 90 0 22 chr6 29214719 29214808 -160064746 + (TG)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr6 29215091 29215112 -160064442 + AT_rich Low_complexity Low_complexity 1 21 0 2339 75 3 7 chr6 29215336 29215642 -160063912 + AluY SINE Alu 3 307 -4 23 0 0 0 chr6 29215755 29215778 -160063776 + AT_rich Low_complexity Low_complexity 1 23 0 907 181 34 61 chr6 29215778 29216074 -160063480 - L1MA9 LINE L1 -25 6287 5904 * 1110 201 85 61 chr6 29216072 29216400 -160063154 + L1MA9 LINE L1 5553 5888 -424 232 309 8 40 chr6 29216486 29216612 -160062942 + L2 LINE L2 3117 3238 -75 186 309 72 31 chr6 29217180 29217277 -160062277 - L2 LINE L2 -229 3043 2943 314 302 0 17 chr6 29217367 29217483 -160062071 + CT-rich Low_complexity Low_complexity 1 114 0 2234 84 7 0 chr6 29219481 29219777 -160059777 - AluSg SINE Alu -12 298 1 445 337 43 17 chr6 29221225 29221631 -160057923 - MLT1H LTR MaLR -16 533 82 27 49 0 0 chr6 29221804 29221845 -160057709 + AT_rich Low_complexity Low_complexity 1 41 0 2041 80 3 27 chr6 29221875 29222175 -160057379 + AluY SINE Alu 3 295 -16 415 220 30 30 chr6 29222481 29222581 -160056973 - MIR SINE MIR -56 206 107 2213 81 0 7 chr6 29222610 29222905 -160056649 - AluSc SINE Alu -13 296 4 30 27 0 0 chr6 29223025 29223062 -160056492 + AT_rich Low_complexity Low_complexity 1 37 0 1299 227 22 22 chr6 29223629 29223950 -160055604 - MER63 DNA MER1_type 0 1062 742 448 120 82 4 chr6 29224121 29224396 -160055158 + (TA)n Simple_repeat Simple_repeat 1 296 0 240 130 43 0 chr6 29224408 29224477 -160055077 + (TA)n Simple_repeat Simple_repeat 1 72 0 198 0 0 0 chr6 29224998 29225020 -160054534 + (A)n Simple_repeat Simple_repeat 1 22 0 2452 158 38 14 chr6 29226082 29226587 -160052967 - L1MA4 LINE L1 -3 6297 5781 21 36 0 0 chr6 29226624 29226652 -160052902 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 29227778 29227807 -160051747 + AT_rich Low_complexity Low_complexity 1 29 0 268 198 111 12 chr6 29228018 29228099 -160051455 - L1MA9 LINE L1 -22 6290 6202 746 204 39 23 chr6 29228245 29228537 -160051017 - MLT1A1 LTR MaLR -15 350 1 26 30 0 0 chr6 29228895 29228928 -160050626 + AT_rich Low_complexity Low_complexity 1 33 0 1977 106 4 4 chr6 29230060 29230334 -160049220 - AluSp SINE Alu -39 274 1 1074 241 110 48 chr6 29230669 29231245 -160048309 - MLT1D LTR MaLR -4 501 3 228 267 103 34 chr6 29231544 29231690 -160047864 - L1ME3 LINE L1 -44 6118 5963 646 297 6 6 chr6 29232090 29232272 -160047282 - MLT1I LTR MaLR -159 250 69 2119 121 0 10 chr6 29232826 29233131 -160046423 - AluSg SINE Alu -8 302 1 1410 184 6 69 chr6 29233472 29233715 -160045839 - AluJo SINE Alu -12 300 80 2382 55 0 39 chr6 29233715 29234026 -160045528 + AluY SINE Alu 2 300 -11 1410 184 6 69 chr6 29234026 29234102 -160045452 - AluJo SINE Alu -232 80 1 985 312 49 18 chr6 29234752 29235137 -160044417 - MLT1I LTR MaLR -12 397 1 1823 145 0 21 chr6 29235226 29235516 -160044038 - AluSx SINE Alu -15 297 14 482 151 35 0 chr6 29235436 29235522 -160044032 - AluS SINE Alu -220 93 5 807 121 16 0 chr6 29235782 29235906 -160043648 - AluSq/x SINE Alu -186 126 1 1871 97 86 0 chr6 29236258 29236526 -160043028 + AluSp SINE Alu 1 291 -22 1090 233 145 44 chr6 29237719 29238179 -160041375 + MLT1D LTR MaLR 1 390 0 24 0 0 0 chr6 29238468 29238492 -160041062 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr6 29239272 29239311 -160040243 + AT_rich Low_complexity Low_complexity 1 39 0 1380 227 49 94 chr6 29240038 29240722 -160038832 - L1MC5 LINE L1 -697 7264 6603 2438 74 0 3 chr6 29241128 29241440 -160038114 - AluY SINE Alu 0 311 1 341 309 18 36 chr6 29241803 29242078 -160037476 - L1MC5 LINE L1 -2166 5642 5373 2401 62 16 10 chr6 29342478 29342787 -159936767 - AluY SINE Alu 0 311 1 255 133 0 0 chr6 29343060 29343105 -159936449 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 1547 190 11 4 chr6 29343105 29343384 -159936170 - AluJb SINE Alu -18 294 14 295 104 15 15 chr6 29343521 29343588 -159935966 + (TA)n Simple_repeat Simple_repeat 2 68 0 730 137 23 30 chr6 29345128 29345259 -159934295 - AluJo SINE Alu -66 246 117 2193 119 0 0 chr6 29347299 29347592 -159931962 - AluSx SINE Alu -17 295 3 1191 111 0 0 chr6 29347593 29347746 -159931808 - AluSg/x SINE Alu -18 294 142 363 313 70 26 chr6 29347986 29348213 -159931341 - L1ME LINE L1 -5145 1786 1550 227 292 28 0 chr6 29348249 29348321 -159931233 - L1ME LINE L1 -5071 1352 1279 207 0 0 0 chr6 29348814 29348837 -159930717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1041 237 73 15 chr6 29350222 29350551 -159929003 - L1ME3A LINE L1 -51 6119 5772 392 196 58 116 chr6 29350573 29350711 -159928843 + L2 LINE L2 3176 3305 -8 426 318 121 12 chr6 29351900 29352073 -159927481 - MIR SINE MIR -19 243 52 184 222 74 19 chr6 29352366 29352420 -159927134 + L2 LINE L2 3256 3312 -1 1149 244 15 7 chr6 29353293 29353563 -159925991 - MLT1C LTR MaLR 0 467 196 750 168 0 0 chr6 29353569 29353706 -159925848 + CT-rich Low_complexity Low_complexity 4 140 0 465 250 0 0 chr6 29353720 29353844 -159925710 + T-rich Low_complexity Low_complexity 1 124 0 * 935 160 0 6 chr6 29353830 29354011 -159925543 + CT-rich Low_complexity Low_complexity 1 180 0 747 181 7 0 chr6 29354018 29354156 -159925398 - FRAM SINE Alu -17 159 21 614 228 25 13 chr6 29354167 29354325 -159925229 - MLT1C LTR MaLR -307 160 1 3067 256 96 20 chr6 29355636 29356905 -159922649 - L1MC4 LINE L1 -145 7897 6441 2294 218 61 17 chr6 29357008 29357760 -159921794 - L1ME2 LINE L1 -228 5936 5147 1344 251 91 31 chr6 29357836 29358254 -159921300 - MER69 DNA AcHobo -2083 443 1 22 0 0 0 chr6 29358397 29358419 -159921135 + AT_rich Low_complexity Low_complexity 1 22 0 887 146 70 49 chr6 29358517 29358702 -159920852 - BC200 scRNA scRNA -7 193 5 367 293 120 0 chr6 29359285 29359435 -159920119 + ERVL LTR ERVL 2323 2490 -3274 293 224 60 0 chr6 29359435 29359502 -159920052 + MER76 LTR ERV 595 665 -23 * 554 227 21 14 chr6 29359489 29359630 -159919924 + MLT1D LTR MaLR 362 503 -2 329 352 44 32 chr6 29359673 29359923 -159919631 + ERVL LTR ERVL 3007 3259 -2226 200 35 35 0 chr6 29360027 29360056 -159919498 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 223 214 18 0 chr6 29360087 29360143 -159919411 + (TA)n Simple_repeat Simple_repeat 1 57 0 7819 173 36 66 chr6 29360196 29360355 -159919199 - L1MC4a LINE L1 0 7808 7646 2009 133 0 7 chr6 29360355 29360655 -159918899 + AluSx SINE Alu 1 298 -14 7819 173 36 66 chr6 29360655 29361733 -159917821 - L1MC4a LINE L1 -162 7646 6646 213 39 0 0 chr6 29361733 29361759 -159917795 + (TG)n Simple_repeat Simple_repeat 1 26 0 7819 173 36 66 chr6 29361759 29362470 -159917084 - L1MC4a LINE L1 -1162 6646 5916 2109 142 0 13 chr6 29362510 29362821 -159916733 + AluSx SINE Alu 5 311 -1 1892 113 58 24 chr6 29362822 29363113 -159916441 - THE1B LTR MaLR -63 301 1 12278 84 1 0 chr6 29363113 29364692 -159914862 - THE1B-int LTR MaLR 0 1580 1 2254 101 72 23 chr6 29364692 29365039 -159914515 - THE1B LTR MaLR 0 364 1 226 319 43 0 chr6 29365170 29365239 -159914315 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 29366863 29366894 -159912660 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 29367671 29367708 -159911846 + (TG)n Simple_repeat Simple_repeat 1 37 0 244 355 133 15 chr6 29369852 29370055 -159909499 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 29370056 29370094 -159909460 + AT_rich Low_complexity Low_complexity 1 38 0 1999 124 0 48 chr6 29371450 29371764 -159907790 - AluSx SINE Alu -11 301 3 1671 164 25 7 chr6 29373252 29373527 -159906027 + AluJo SINE Alu 1 280 -32 603 94 19 9 chr6 29373527 29373633 -159905921 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 842 278 90 34 chr6 29375947 29376303 -159903251 - L2 LINE L2 0 3313 2938 494 227 133 0 chr6 29376315 29376465 -159903089 - L2 LINE L2 -1206 2108 1939 635 234 15 0 chr6 29376935 29377072 -159902482 + MIR SINE MIR 102 240 -22 487 302 90 19 chr6 29377163 29377540 -159902014 + L1MC/D LINE L1 4645 5048 -1098 542 261 105 4 chr6 29377669 29377907 -159901647 + L1MC/D LINE L1 5254 5515 -2293 235 243 27 40 chr6 29377907 29377981 -159901573 - MER76 LTR ERV -3 685 613 794 51 0 0 chr6 29377981 29378079 -159901475 + L1P LINE L1 1 98 -6048 * 5004 74 178 10 chr6 29378048 29378844 -159900710 + L1P LINE L1 580 1509 -4637 * 12978 23 0 2 chr6 29378839 29380374 -159899180 - L1P LINE L1 -802 5344 3813 925 344 65 38 chr6 29380676 29381651 -159897903 - ERVL LTR ERVL -1290 4195 3195 349 261 50 1 chr6 29381688 29381783 -159897771 - ERVL LTR ERVL -1901 3095 3010 306 312 9 46 chr6 29381783 29381892 -159897662 - LTR16A LTR ERVL -143 307 203 783 320 53 14 chr6 29382192 29382581 -159896973 + MLT1H LTR MaLR 1 442 -107 1377 297 88 11 chr6 29382657 29383370 -159896184 + L1M4 LINE L1 3600 4367 -1779 283 301 66 22 chr6 29384896 29385032 -159894522 + MIR SINE MIR 58 199 -63 279 308 80 34 chr6 29385713 29385976 -159893578 - L1MC/D LINE L1 -515 5727 5453 1595 139 68 4 chr6 29388052 29388318 -159891236 - AluJb SINE Alu -1 311 29 318 188 130 0 chr6 29388318 29388387 -159891167 - AluJ/FLAM SINE Alu -224 78 1 2322 108 0 0 chr6 29388781 29389077 -159890477 - AluSx SINE Alu -14 298 3 27 81 0 0 chr6 29390029 29390091 -159889463 + AT_rich Low_complexity Low_complexity 1 62 0 344 274 59 67 chr6 29390127 29390397 -159889157 - L1MC4a LINE L1 -1755 6053 5786 435 324 21 7 chr6 29390979 29391124 -159888430 - MIR SINE MIR -98 164 18 1735 64 64 0 chr6 29391249 29391482 -159888072 + L1PB1 LINE L1 5904 6151 0 333 0 0 0 chr6 29393192 29393229 -159886325 + (CA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr6 29394369 29394393 -159885161 + AT_rich Low_complexity Low_complexity 1 24 0 3751 138 44 11 chr6 29394519 29395173 -159884381 - L1MB3 LINE L1 0 6183 5508 531 165 21 0 chr6 29395423 29395520 -159884034 + FLAM_C SINE Alu 38 136 -7 451 339 71 51 chr6 29395748 29395967 -159883587 + L3 LINE CR1 1210 1440 -137 2187 121 0 10 chr6 29395967 29396280 -159883274 + AluSq SINE Alu 1 310 -3 451 339 71 51 chr6 29396280 29396414 -159883140 + L3 LINE CR1 1440 1570 -7 1571 252 50 8 chr6 29396622 29397173 -159882381 - L1MC4a LINE L1 -406 5772 5206 600 160 19 0 chr6 29397173 29397279 -159882275 - AluSg/x SINE Alu -7 302 195 288 203 16 0 chr6 29397291 29397355 -159882199 - L1MB7 LINE L1 -9 6175 6111 311 172 16 0 chr6 29397385 29397449 -159882105 - L1MB7 LINE L1 -9 6175 6111 887 205 0 6 chr6 29397449 29397620 -159881934 + AluJb SINE Alu 137 306 -6 4074 178 44 30 chr6 29397620 29398158 -159881396 - L1MB7 LINE L1 -63 6121 5592 2105 104 62 0 chr6 29398158 29398446 -159881108 - AluSx SINE Alu -6 306 1 4074 178 44 30 chr6 29398446 29399563 -159879991 - L1MB7 LINE L1 -592 5592 4442 341 256 8 34 chr6 29399659 29399776 -159879778 - L1M4 LINE L1 -6335 207 94 338 85 0 0 chr6 29399770 29399817 -159879737 + L1MC/D LINE L1 5196 5242 -904 * 288 0 0 0 chr6 29400250 29400282 -159879272 + (TG)n Simple_repeat Simple_repeat 2 33 0 1613 183 10 3 chr6 29400292 29400604 -159878950 + L1MC/D LINE L1 5255 5568 -2217 415 345 38 24 chr6 29400723 29401016 -159878538 - ERVL LTR ERVL -441 5323 5027 836 225 46 62 chr6 29401019 29401456 -159878098 - MLT1F LTR MaLR -5 537 94 2002 185 93 83 chr6 29401456 29402097 -159877457 - MER52A LTR ERV1 0 1755 586 1547 219 159 73 chr6 29402087 29402717 -159876837 - MER52A LTR ERV1 -406 1349 666 * 219 239 127 0 chr6 29402940 29403011 -159876543 + L2 LINE L2 3150 3229 -43 8434 157 28 32 chr6 29404170 29405887 -159873667 + L1MA6 LINE L1 3602 5310 -857 3892 142 42 32 chr6 29405904 29406116 -159873438 + L1MA6 LINE L1 5383 5592 -708 308 93 0 19 chr6 29406116 29406170 -159873384 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3892 142 42 32 chr6 29406170 29406698 -159872856 + L1MA6 LINE L1 5592 6130 -170 939 103 21 77 chr6 29406757 29406852 -159872702 + L1MA6 LINE L1 6115 6195 -105 2126 104 10 7 chr6 29406852 29407149 -159872405 - AluSg SINE Alu -12 298 1 939 103 21 77 chr6 29407149 29407247 -159872307 + L1MA6 LINE L1 6195 6297 -3 38 68 0 0 chr6 29407409 29407482 -159872072 + AT_rich Low_complexity Low_complexity 1 73 0 21 57 0 0 chr6 29407494 29407529 -159872025 + AT_rich Low_complexity Low_complexity 1 35 0 516 105 0 0 chr6 29407583 29407659 -159871895 + (CA)n Simple_repeat Simple_repeat 2 77 0 621 322 68 11 chr6 29407683 29408136 -159871418 - L1MC/D LINE L1 -2011 5797 5319 2239 91 7 0 chr6 29408428 29408725 -159870829 - AluY SINE Alu -12 299 1 30 77 0 0 chr6 29409104 29409169 -159870385 + AT_rich Low_complexity Low_complexity 1 65 0 525 329 74 55 chr6 29410748 29411178 -159868376 + L3 LINE CR1 832 1278 -299 1675 151 0 47 chr6 29411178 29411501 -159868053 + AluJb SINE Alu 1 309 0 525 329 74 55 chr6 29411501 29411649 -159867905 + L3 LINE CR1 1278 1422 -155 1576 180 56 28 chr6 29413000 29413394 -159866160 - LTR37A LTR ERV1 -18 408 4 245 247 62 96 chr6 29413858 29414004 -159865550 + L2 LINE L2 3151 3291 -22 1908 137 11 3 chr6 29416219 29416504 -159863050 - AluJb SINE Alu -23 289 3 1930 148 0 3 chr6 29417450 29417740 -159861814 - AluSq SINE Alu -24 289 1 249 327 46 14 chr6 29417930 29418098 -159861456 + MIR SINE MIR 6 176 -66 313 289 72 11 chr6 29419759 29419939 -159859615 + L1ME3A LINE L1 5767 5957 -213 953 307 87 50 chr6 29420181 29420917 -159858637 + HAL1 LINE L1 123 885 -1622 801 251 191 12 chr6 29421228 29421745 -159857809 + L1ME LINE L1 4424 5033 -1113 955 275 36 75 chr6 29421749 29422321 -159857233 - MLT1G LTR MaLR 0 590 71 1056 251 44 19 chr6 29422368 29422894 -159856660 + L1ME LINE L1 5078 5610 -554 255 207 0 17 chr6 29422894 29422952 -159856602 - MLT1H1 LTR MaLR 0 590 534 906 133 8 0 chr6 29422978 29423106 -159856448 - FLAM_C SINE Alu -14 129 1 277 291 135 57 chr6 29423120 29423412 -159856142 - MLT1H1 LTR MaLR -76 478 145 367 194 11 65 chr6 29423490 29423583 -159855971 + L1ME LINE L1 5603 5690 -474 1543 234 172 0 chr6 29423592 29424011 -159855543 - MER110 LTR ERV1 0 491 1 415 259 202 6 chr6 29424724 29424904 -159854650 - MIR SINE MIR -33 229 18 1660 201 25 22 chr6 29425279 29425642 -159853912 - MLT1A1 LTR MaLR -1 364 1 363 345 81 8 chr6 29425644 29425890 -159853664 - L2 LINE L2 -590 2724 2461 2115 124 0 16 chr6 29425929 29426235 -159853319 + AluSq SINE Alu 1 301 -12 563 158 55 62 chr6 29427025 29427171 -159852383 - L1MC1 LINE L1 0 6333 6189 * 5440 176 25 10 chr6 29427166 29428151 -159851403 - L1MC1 LINE L1 -1 6332 5328 2113 118 17 0 chr6 29428151 29428439 -159851115 - AluSx SINE Alu -17 295 3 5440 176 25 10 chr6 29428439 29428511 -159851043 - L1MC1 LINE L1 -1005 5328 5259 2273 116 31 0 chr6 29428919 29429246 -159850308 + MER1B DNA MER1_type 1 337 0 1527 202 8 58 chr6 29430231 29430613 -159848941 - MLT1A1 LTR MaLR -2 363 1 673 181 116 4 chr6 29430697 29430929 -159848625 + L1MEc LINE L1 2010 2267 -4129 * 2948 240 104 35 chr6 29430912 29430982 -159848572 + L1MEc LINE L1 3091 3155 -3060 2052 149 0 0 chr6 29430982 29431291 -159848263 + AluSx SINE Alu 1 309 -3 2948 240 104 35 chr6 29431291 29432433 -159847121 + L1MEc LINE L1 3155 4386 -1829 1995 153 0 0 chr6 29432444 29432739 -159846815 + AluSx SINE Alu 1 295 -17 264 272 29 29 chr6 29432777 29432880 -159846674 - MLT1H1 LTR MaLR -381 168 66 250 30 0 0 chr6 29432983 29433016 -159846538 + L1MA3 LINE L1 6250 6282 -23 4110 110 96 32 chr6 29433016 29433754 -159845800 - LTR1 LTR ERV1 0 785 1 2262 144 176 30 chr6 29435206 29435741 -159843813 + LTR18B LTR ERVL 2 614 0 1459 203 0 17 chr6 29435762 29436053 -159843501 + HERVL18 LTR ERVL 19 304 -5743 720 176 8 0 chr6 29436065 29436190 -159843364 + HERVL18 LTR ERVL 541 666 -5381 1090 202 3 67 chr6 29436218 29436602 -159842952 + HERVL18 LTR ERVL 1388 1810 -4237 627 180 25 14 chr6 29436601 29436822 -159842732 + HERVL18 LTR ERVL 2119 2450 -3597 * 833 239 0 6 chr6 29436823 29437028 -159842526 + HERVL18 LTR ERVL 2720 2961 -3086 3275 167 7 25 chr6 29437068 29437620 -159841934 + HERVL18 LTR ERVL 2945 3486 -2561 2231 135 191 41 chr6 29437750 29438284 -159841270 + LTR18B LTR ERVL 1 614 0 1478 254 39 14 chr6 29438287 29438724 -159840830 - MER41E LTR ERV1 -42 470 23 407 236 8 49 chr6 29439017 29439140 -159840414 + LTR38B LTR ERV1 1 118 -492 275 233 124 109 chr6 29439442 29439532 -159840022 + LTR38 LTR ERV1 264 351 -205 4649 102 23 12 chr6 29439532 29440215 -159839339 + LTR8 LTR ERV1 1 691 0 275 233 124 109 chr6 29440215 29440399 -159839155 + LTR38 LTR ERV1 351 542 -14 1340 249 75 27 chr6 29440687 29441128 -159838426 - MLT1C LTR MaLR 0 467 6 1606 247 52 30 chr6 29441136 29441501 -159838053 + L1M4 LINE L1 3371 3753 -2393 2210 93 0 32 chr6 29441501 29441812 -159837742 + AluSc SINE Alu 9 309 0 1606 247 52 30 chr6 29441812 29441985 -159837569 + L1M4 LINE L1 3753 3921 -2225 950 105 0 0 chr6 29441986 29442110 -159837444 - AluSp/q SINE Alu -17 296 173 1115 180 5 0 chr6 29442110 29442332 -159837222 + L1MC3 LINE L1 7555 7777 -8 1947 135 7 20 chr6 29442373 29442670 -159836884 - AluSx SINE Alu -19 293 1 305 270 102 35 chr6 29442877 29442933 -159836621 - L1M4 LINE L1 -1739 4407 4356 4995 170 39 10 chr6 29442933 29443809 -159835745 + MER54A LTR ERVL 1 901 0 305 270 102 35 chr6 29443809 29444008 -159835546 - L1M4 LINE L1 -1790 4356 4140 2173 131 0 0 chr6 29444155 29444460 -159835094 - AluSx SINE Alu -7 305 1 536 343 33 15 chr6 29444929 29445200 -159834354 - HERVL LTR ERVL -1857 3797 3522 337 111 0 37 chr6 29445205 29445259 -159834295 - HERVL LTR ERVL -2106 2890 2839 2439 326 29 33 chr6 29447625 29448407 -159831147 - HERVL LTR ERVL -2128 2868 2090 1640 211 48 81 chr6 29448407 29448929 -159830625 + MLT1D LTR MaLR 1 505 0 2439 326 29 33 chr6 29448929 29449302 -159830252 - HERVL LTR ERVL -2906 2090 1717 621 183 40 0 chr6 29449347 29449473 -159830081 + L1MC4 LINE L1 6822 6952 -1090 608 157 25 0 chr6 29449470 29449591 -159829963 + L1MD3 LINE L1 7870 7993 -2 * 2107 186 230 24 chr6 29449593 29449696 -159829858 + L1MC4 LINE L1 6939 7019 -1023 267 31 0 0 chr6 29449696 29449728 -159829826 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 2107 186 230 24 chr6 29449728 29450262 -159829292 + L1MC4 LINE L1 7019 7708 -334 978 214 34 0 chr6 29450262 29450468 -159829086 + U3 snRNA snRNA 1 213 -4 180 0 0 0 chr6 29450494 29450514 -159829040 + (CAA)n Simple_repeat Simple_repeat 2 21 0 940 121 15 0 chr6 29450548 29450680 -159828874 + AluJb SINE Alu 1 134 -178 22 56 0 0 chr6 29450683 29450719 -159828835 + AT_rich Low_complexity Low_complexity 1 36 0 419 226 75 9 chr6 29450721 29450930 -159828624 + L1MC4 LINE L1 7724 8029 -13 29 0 0 0 chr6 29452733 29452762 -159826792 + AT_rich Low_complexity Low_complexity 1 29 0 318 26 0 0 chr6 29452799 29452838 -159826716 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 394 71 26 chr6 29453164 29453390 -159826164 + L2 LINE L2 2586 2821 -493 362 402 16 35 chr6 29453492 29453748 -159825806 + L2 LINE L2 2997 3247 -25 263 294 122 42 chr6 29454239 29454453 -159825101 - MIR SINE MIR -2 260 30 35 0 0 0 chr6 29454470 29454505 -159825049 + AT_rich Low_complexity Low_complexity 1 35 0 453 304 120 0 chr6 29454893 29455077 -159824477 - MIR SINE MIR -49 213 8 267 300 67 17 chr6 29455110 29455230 -159824324 - L2 LINE L2 -1007 2307 2182 44672 35 1 1 chr6 29455452 29461607 -159817947 + L1PA3 LINE L1 1 6152 -3 29 28 0 0 chr6 29461607 29461643 -159817911 + AT_rich Low_complexity Low_complexity 1 36 0 526 311 77 0 chr6 29461656 29461852 -159817702 - MIR SINE MIR -3 259 49 2365 81 0 13 chr6 29462078 29462376 -159817178 - AluSq SINE Alu -19 294 1 24 77 0 0 chr6 29462429 29462481 -159817073 + AT_rich Low_complexity Low_complexity 1 52 0 13705 113 84 37 chr6 29463099 29463618 -159815936 + Tigger1 DNA MER2_type 1 494 -1924 2240 45 38 0 chr6 29463618 29463906 -159815648 + L1PA4 LINE L1 5854 6152 -3 13705 113 84 37 chr6 29463906 29465694 -159813860 + Tigger1 DNA MER2_type 494 2418 0 1262 153 5 0 chr6 29465696 29465885 -159813669 + Tigger7 DNA MER2_type 1 190 -515 355 281 241 5 chr6 29466121 29466320 -159813234 + MIR SINE MIR 10 255 -7 363 288 80 8 chr6 29466358 29466483 -159813071 + L2 LINE L2 3179 3312 -1 21 0 0 0 chr6 29466757 29466778 -159812776 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 29467456 29467488 -159812066 + AT_rich Low_complexity Low_complexity 1 32 0 303 284 168 17 chr6 29468087 29468432 -159811122 + L1ME4a LINE L1 5724 6120 -1 186 209 0 0 chr6 29470095 29470138 -159809416 + (TA)n Simple_repeat Simple_repeat 2 44 0 2350 39 0 3 chr6 29470904 29471190 -159808364 + L1PA5 LINE L1 5854 6138 -16 1051 182 0 11 chr6 29471207 29471394 -159808160 + AluJb SINE Alu 120 304 -8 390 122 8 0 chr6 29471508 29471596 -159807958 - AluJ/FRAM SINE Alu 0 309 230 209 277 0 0 chr6 29471904 29471951 -159807603 + L2 LINE L2 3267 3313 0 33 73 0 0 chr6 29471959 29472027 -159807527 + AT_rich Low_complexity Low_complexity 1 68 0 238 266 109 8 chr6 29472381 29472509 -159807045 - L1MDa LINE L1 -4757 1372 1232 2119 72 0 0 chr6 29472599 29472861 -159806693 - AluY SINE Alu -17 294 33 301 272 91 78 chr6 29472862 29473105 -159806449 - L1MDa LINE L1 -4956 1163 918 1519 134 0 0 chr6 29473886 29474110 -159805444 - AluJb SINE Alu -26 286 63 186 324 54 0 chr6 29475119 29475193 -159804361 - L2 LINE L2 -45 3227 3150 395 352 114 26 chr6 29475726 29476417 -159803137 - L2 LINE L2 -751 2563 1812 2184 92 0 0 chr6 29476895 29477213 -159802341 - AluSx SINE Alu 0 318 1 630 221 25 13 chr6 29478563 29478721 -159800833 + MLT1C LTR MaLR 1 160 -307 747 181 7 0 chr6 29478732 29478870 -159800684 + FRAM SINE Alu 21 159 -17 886 161 6 6 chr6 29478877 29479057 -159800497 + GA-rich Low_complexity Low_complexity 1 180 0 315 248 17 8 chr6 29479032 29479149 -159800405 + A-rich Low_complexity Low_complexity 4 121 0 * 642 184 0 0 chr6 29479162 29479287 -159800267 + GA-rich Low_complexity Low_complexity 4 128 0 1149 244 15 7 chr6 29479293 29479563 -159799991 + MLT1C LTR MaLR 196 467 0 184 222 74 19 chr6 29480436 29480490 -159799064 - L2 LINE L2 -1 3312 3256 406 303 136 13 chr6 29480783 29480938 -159798616 + MIR SINE MIR 52 225 -37 392 196 58 116 chr6 29482146 29482284 -159797270 - L2 LINE L2 -8 3305 3176 1057 231 73 15 chr6 29482306 29482635 -159796919 + L1ME3A LINE L1 5772 6119 -51 227 292 28 0 chr6 29484532 29484604 -159794950 + L1MCc LINE L1 1279 1352 -5071 363 313 70 26 chr6 29484640 29484867 -159794687 + L1MCc LINE L1 1550 1786 -5145 1191 111 0 0 chr6 29485107 29485260 -159794294 + AluSg/x SINE Alu 140 292 -18 2186 119 0 0 chr6 29485261 29485554 -159794000 + AluSx SINE Alu 3 295 -17 730 137 23 30 chr6 29487594 29487725 -159791829 + AluJo SINE Alu 117 246 -66 265 143 68 7 chr6 29489264 29489411 -159790143 + (TA)n Simple_repeat Simple_repeat 1 156 0 214 114 95 13 chr6 29489425 29489583 -159789971 + (TA)n Simple_repeat Simple_repeat 1 171 0 379 123 103 7 chr6 29490050 29490205 -159789349 + (TA)n Simple_repeat Simple_repeat 2 171 0 344 101 94 28 chr6 29490223 29490542 -159789012 + (TA)n Simple_repeat Simple_repeat 1 340 0 250 337 114 40 chr6 29491916 29492118 -159787436 - MIR SINE MIR -39 223 7 2387 68 0 0 chr6 29492542 29492847 -159786707 + AluY SINE Alu 1 305 0 1945 139 36 7 chr6 29493421 29493722 -159785832 - AluJb SINE Alu -2 310 1 204 229 21 57 chr6 29493949 29494089 -159785465 + A-rich Low_complexity Low_complexity 5 139 0 28 29 0 0 chr6 29495771 29495806 -159783748 + AT_rich Low_complexity Low_complexity 1 35 0 2160 107 0 28 chr6 29496211 29496529 -159783025 - AluSg1 SINE Alu 0 309 1 985 237 88 19 chr6 29497047 29497376 -159782178 + L1ME3A LINE L1 5535 5889 -281 1543 190 11 4 chr6 29497470 29497749 -159781805 + AluJb SINE Alu 14 294 -18 255 133 0 0 chr6 29497749 29497794 -159781760 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 2452 48 16 19 chr6 29498067 29498378 -159781176 + AluY SINE Alu 1 310 -1 1942 120 4 0 chr6 29498480 29498746 -159780808 - AluSx SINE Alu -45 267 1 240 398 19 12 chr6 29499036 29499197 -159780357 + MIR SINE MIR 20 181 -81 850 236 17 11 chr6 29499339 29499517 -159780037 - MLT1C LTR MaLR -102 365 187 2032 136 3 0 chr6 29499553 29499847 -159779707 + AluJb SINE Alu 1 295 -17 2172 111 3 3 chr6 29501354 29501652 -159777902 - AluSx SINE Alu -14 298 1 445 165 51 0 chr6 29502309 29502388 -159777166 + MSTA LTR MaLR 3 85 -343 1400 161 16 80 chr6 29502490 29502801 -159776753 + L1MDa LINE L1 72 362 -6178 219 289 0 0 chr6 29503259 29503311 -159776243 + L2 LINE L2 3262 3313 0 320 273 133 60 chr6 29505651 29505681 -159773873 - L2 LINE L2 0 3313 3287 1537 128 0 4 chr6 29505681 29505908 -159773646 - AluSx SINE Alu -86 226 1 320 273 133 60 chr6 29505908 29506126 -159773428 - L2 LINE L2 -26 3287 3047 1267 99 6 0 chr6 29506239 29506400 -159773154 + AluSx SINE Alu 1 162 -150 214 358 77 23 chr6 29506403 29506589 -159772965 - L2 LINE L2 -491 2823 2622 2130 131 3 0 chr6 29506589 29506895 -159772659 + AluSx SINE Alu 5 311 -1 214 358 77 23 chr6 29506895 29506929 -159772625 - L2 LINE L2 -692 2622 2591 185 397 68 0 chr6 29506941 29507014 -159772540 - MIR SINE MIR -172 90 13 2897 13 0 0 chr6 29508929 29509242 -159770312 + AluYb8 SINE Alu 1 313 -5 182 362 0 0 chr6 29509738 29509796 -159769758 - L2 LINE L2 -208 3064 3007 562 305 82 68 chr6 29510453 29510820 -159768734 - LTR67 LTR ERVL -82 475 104 560 243 5 79 chr6 29510849 29511038 -159768516 + LTR16A LTR ERVL 18 192 -258 510 286 122 71 chr6 29511990 29512497 -159767057 + MER4-int LTR ERV1 6140 6672 -450 262 176 0 20 chr6 29512761 29512812 -159766742 + MER4-int LTR ERV1 4194 4243 -2355 2840 126 22 2 chr6 29512868 29513282 -159766272 + LTR42 LTR ERVL 41 462 -33 1474 161 4 40 chr6 29513690 29513964 -159765590 - AluJb SINE Alu -48 264 1 1859 163 83 0 chr6 29513999 29514324 -159765230 + MER65A LTR ERV1 47 398 -47 1781 97 0 0 chr6 29514325 29514551 -159765003 - AluSg/x SINE Alu -14 296 71 3222 104 36 20 chr6 29514551 29515049 -159764505 + LTR10A LTR ERV1 1 506 -103 2123 85 3 53 chr6 29515068 29515387 -159764167 - AluY SINE Alu -8 303 1 3198 80 122 11 chr6 29517000 29517460 -159762094 - MER9 LTR ERVK 0 511 1 3239 143 50 4 chr6 29517941 29518464 -159761090 + LTR10A LTR ERV1 1 547 -62 2191 105 0 26 chr6 29519065 29519371 -159760183 + AluSg SINE Alu 1 298 -12 25 31 0 0 chr6 29519912 29519944 -159759610 + AT_rich Low_complexity Low_complexity 1 32 0 199 280 13 53 chr6 29519973 29520048 -159759506 + L2 LINE L2 3201 3272 0 2283 77 38 0 chr6 29521133 29521420 -159758134 + AluY SINE Alu 1 298 -13 224 30 30 0 chr6 29521921 29521954 -159757600 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2238 92 0 0 chr6 29521957 29522238 -159757316 - AluSg SINE Alu -29 281 1 27 0 0 0 chr6 29524210 29524237 -159755317 + AT_rich Low_complexity Low_complexity 1 27 0 540 242 53 0 chr6 29525407 29525539 -159754015 - MIR SINE MIR -106 156 18 266 293 41 16 chr6 29526703 29526826 -159752728 - MER65A LTR ERV1 -317 128 3 1289 180 64 97 chr6 29528786 29529159 -159750395 + MLT1A2 LTR MaLR 1 361 -13 3062 135 14 0 chr6 29530036 29530458 -159749096 + MSTA LTR MaLR 1 428 0 345 333 14 14 chr6 29530876 29531017 -159748537 - MIR SINE MIR -44 218 78 808 221 96 66 chr6 29531139 29531674 -159747880 + LTR48B LTR ERV1 1 542 0 1700 231 38 58 chr6 29532315 29532761 -159746793 + MER45B DNA AcHobo 1 437 -603 2455 65 3 3 chr6 29532768 29533076 -159746478 + AluY SINE Alu 1 308 -3 962 122 86 46 chr6 29533084 29533281 -159746273 + LTR49-int LTR ERV1 2919 3123 -3208 1219 150 37 61 chr6 29533310 29533556 -159745998 + LTR49-int LTR ERV1 3109 3348 -2983 678 191 16 24 chr6 29533603 29533729 -159745825 + LTR49-int LTR ERV1 3353 3477 -2854 429 180 0 0 chr6 29533748 29533809 -159745745 + AluJ/FLAM SINE Alu 7 67 -245 2216 128 6 12 chr6 29533811 29534148 -159745406 + L1P3 LINE L1 786 1120 -4755 833 120 0 24 chr6 29534145 29534270 -159745284 - L1P3 LINE L1 -6306 155 34 * 3469 222 16 44 chr6 29534255 29535227 -159744327 + L1P3 LINE L1 1169 2113 -4348 1818 124 18 0 chr6 29535213 29535487 -159744067 - L1P LINE L1 -3261 2885 2607 * 12030 100 14 5 chr6 29535489 29537932 -159741622 + L1PA8 LINE L1 3705 6159 -13 5476 126 79 69 chr6 29538018 29539214 -159740340 + LTR49-int LTR ERV1 3712 4918 -1413 228 190 51 51 chr6 29540324 29540403 -159739151 - MIR SINE MIR -4 258 180 753 186 52 6 chr6 29540438 29540610 -159738944 + L1MD3 LINE L1 7806 7985 -10 1210 174 57 112 chr6 29540839 29541138 -159738416 + MER110A LTR ERV1 39 306 -162 6573 21 1 0 chr6 29541138 29541893 -159737661 + L1PA3 LINE L1 5396 6151 -4 1210 174 57 112 chr6 29541893 29542048 -159737506 + MER110A LTR ERV1 306 468 0 2368 95 0 7 chr6 29542784 29543090 -159736464 - AluSx SINE Alu -8 304 1 829 300 150 6 chr6 29543235 29543658 -159735896 - L2 LINE L2 0 3272 2782 574 128 0 12 chr6 29543671 29543757 -159735797 + FLAM_A SINE Alu 31 115 -27 343 280 40 48 chr6 29544270 29544395 -159735159 + L2 LINE L2 2951 3074 -198 1758 122 74 37 chr6 29544688 29545040 -159734514 + THE1C LTR MaLR 6 370 -5 46 54 0 0 chr6 29545705 29545779 -159733775 + AT_rich Low_complexity Low_complexity 1 74 0 223 256 0 0 chr6 29545900 29545939 -159733615 - MIR SINE MIR -207 55 17 272 327 126 57 chr6 29546037 29546196 -159733358 - MER5B DNA MER1_type -16 173 4 372 286 67 43 chr6 29546304 29546932 -159732622 - L1MEd LINE L1 -770 1720 981 219 69 0 0 chr6 29547677 29547706 -159731848 + (T)n Simple_repeat Simple_repeat 1 29 0 2128 153 17 42 chr6 29548051 29548455 -159731099 + MSTD LTR MaLR 3 396 0 2024 134 16 0 chr6 29550012 29550319 -159729235 + AluSx SINE Alu 1 312 0 1620 191 3 63 chr6 29551250 29551569 -159727985 + AluJo SINE Alu 1 300 -12 2099 140 5 40 chr6 29552103 29552250 -159727304 - LTR29 LTR ERV1 -235 387 236 2499 69 0 3 chr6 29552250 29552555 -159726999 - AluSp SINE Alu -9 304 1 2099 140 5 40 chr6 29552555 29552806 -159726748 - LTR29 LTR ERV1 -386 236 3 1495 122 55 11 chr6 29552806 29553065 -159726489 - LTR24B LTR ERV1 -286 290 17 1967 110 45 3 chr6 29553065 29553357 -159726197 - AluSc SINE Alu -5 304 1 1495 122 55 11 chr6 29553357 29553368 -159726186 - LTR24B LTR ERV1 -559 17 8 516 170 40 0 chr6 29553718 29553818 -159725736 + MLT1A1 LTR MaLR 1 104 -261 * 837 231 50 36 chr6 29553815 29554118 -159725436 + LTR48B LTR ERV1 338 644 0 597 111 0 0 chr6 29554260 29554341 -159725213 - AluSg/x SINE Alu -16 293 213 1785 133 0 11 chr6 29554342 29554606 -159724948 - AluSx SINE Alu -51 261 1 30 0 0 0 chr6 29555598 29555628 -159723926 + AT_rich Low_complexity Low_complexity 1 30 0 2270 95 10 3 chr6 29555657 29555952 -159723602 - AluSg SINE Alu -13 297 1 240 305 39 18 chr6 29556641 29556873 -159722681 + L1M1 LINE L1 5497 5735 -568 21 0 0 0 chr6 29557046 29557067 -159722487 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr6 29557212 29557245 -159722309 + GA-rich Low_complexity Low_complexity 3 35 0 228 35 0 0 chr6 29557433 29557462 -159722092 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1900 136 0 21 chr6 29557475 29557755 -159721799 - AluSx SINE Alu -38 274 1 282 336 39 0 chr6 29557963 29558091 -159721463 - MIR SINE MIR -26 236 104 186 176 0 0 chr6 29558136 29558187 -159721367 + T-rich Low_complexity Low_complexity 1 51 0 288 0 0 0 chr6 29559206 29559238 -159720316 + (TA)n Simple_repeat Simple_repeat 1 32 0 28 61 0 0 chr6 29559593 29559642 -159719912 + AT_rich Low_complexity Low_complexity 1 49 0 1809 201 53 54 chr6 29560401 29560594 -159718960 + MER44D DNA MER2_type 1 193 -2294 1285 98 53 114 chr6 29560594 29560839 -159718715 + MER30 DNA MER1_type 1 230 0 1809 201 53 54 chr6 29560839 29561196 -159718358 + MER44D DNA MER2_type 193 605 0 2339 82 13 0 chr6 29561672 29561978 -159717576 + AluSp SINE Alu 1 310 -3 285 98 0 0 chr6 29563475 29563516 -159716038 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr6 29563932 29563959 -159715595 + (CA)n Simple_repeat Simple_repeat 2 28 0 2327 89 3 3 chr6 29564307 29564609 -159714945 + AluSx SINE Alu 1 302 -10 896 195 11 26 chr6 29565005 29565195 -159714359 - MER5A DNA MER1_type -2 187 1 2130 130 0 7 chr6 29565665 29565964 -159713590 - AluSx SINE Alu -15 297 1 5423 119 20 19 chr6 29565983 29567687 -159711867 - L1PA16 LINE L1 0 6166 4445 2150 66 3 78 chr6 29567687 29568007 -159711547 - AluY SINE Alu -15 296 1 5423 119 20 19 chr6 29568007 29568330 -159711224 - L1PA16 LINE L1 -1721 4445 4124 216 372 67 16 chr6 29568333 29568645 -159710909 + L3 LINE CR1 430 757 -820 501 343 60 29 chr6 29568785 29569132 -159710422 + L3 LINE CR1 1061 1418 -159 2350 67 30 3 chr6 29569359 29569656 -159709898 + AluY SINE Alu 1 305 -6 32 0 0 0 chr6 29569851 29569883 -159709671 + AT_rich Low_complexity Low_complexity 1 32 0 330 172 26 73 chr6 29570046 29570191 -159709363 - LTR49 LTR ERV1 -16 740 508 3018 157 20 4 chr6 29570193 29570697 -159708857 - MER41E LTR ERV1 0 512 1 698 202 69 95 chr6 29570852 29571226 -159708328 - LTR49 LTR ERV1 -292 303 5 229 121 0 0 chr6 29571197 29571230 -159708324 - MER34B LTR ERV1 -532 33 1 * 212 350 10 29 chr6 29571271 29571374 -159708180 - MIR SINE MIR -6 256 156 1387 162 128 25 chr6 29571377 29571566 -159707988 + LTR49 LTR ERV1 1 169 -453 1486 190 35 10 chr6 29571566 29571856 -159707698 - AluJo SINE Alu -11 301 5 1387 162 128 25 chr6 29571856 29572148 -159707406 + LTR49 LTR ERV1 169 609 -13 2146 98 23 10 chr6 29573125 29573431 -159706123 - AluSx SINE Alu -2 310 1 1093 161 92 65 chr6 29574097 29574253 -159705301 - AluJo SINE Alu -2 300 131 2039 81 53 3 chr6 29574253 29574538 -159705016 - AluSc SINE Alu -10 299 1 1093 161 92 65 chr6 29574538 29574673 -159704881 - AluJo SINE Alu -171 131 1 2098 123 7 3 chr6 29576323 29576631 -159702923 - AluSg1 SINE Alu 0 309 1 485 172 86 66 chr6 29578219 29578337 -159701217 - MLT1B LTR MaLR -236 154 31 1688 124 113 15 chr6 29578337 29578611 -159700943 - AluSg SINE Alu -9 301 1 485 172 86 66 chr6 29578611 29578643 -159700911 - MLT1B LTR MaLR -359 31 1 494 287 24 0 chr6 29578834 29578998 -159700556 - Charlie8 DNA MER1_type -1955 462 295 407 100 17 0 chr6 29579696 29579756 -159699798 - U7 snRNA snRNA -1 62 2 22 0 0 0 chr6 29579756 29579778 -159699776 + AT_rich Low_complexity Low_complexity 1 22 0 3502 115 28 48 chr6 29579813 29580492 -159699062 + MER39B LTR ERV1 1 643 -10 1587 175 52 3 chr6 29580515 29580806 -159698748 - AluJb SINE Alu -7 305 1 325 311 0 0 chr6 29580827 29580917 -159698637 + MER34 LTR ERV1 1 90 -452 260 228 44 95 chr6 29580914 29581072 -159698482 + LTR48 LTR ERV1 160 309 -478 * 1967 186 37 16 chr6 29581687 29581872 -159697682 - MER65A LTR ERV1 0 445 265 4390 103 62 57 chr6 29581872 29582647 -159696907 + MER4E LTR ERV1 1 779 0 1967 186 37 16 chr6 29582647 29582897 -159696657 - MER65A LTR ERV1 -180 265 1 1543 115 9 5 chr6 29583251 29583469 -159696085 + AluSg/x SINE Alu 74 292 -20 336 328 61 40 chr6 29583789 29583987 -159695567 - L2 LINE L2 -10 3303 3102 1243 175 45 84 chr6 29584024 29584333 -159695221 + AluJo SINE Alu 1 297 -15 37 0 0 0 chr6 29584333 29584370 -159695184 + AT_rich Low_complexity Low_complexity 1 37 0 650 0 0 0 chr6 29584683 29584755 -159694799 - tRNA-Met-i tRNA tRNA -3 72 1 637 0 0 0 chr6 29585098 29585169 -159694385 - tRNA-Gly-GGC tRNA tRNA -3 71 1 216 189 0 0 chr6 29585577 29585614 -159693940 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 207 0 0 0 chr6 29585615 29585638 -159693916 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2103 104 3 10 chr6 29585641 29585930 -159693624 - AluSx SINE Alu -24 288 2 388 202 21 0 chr6 29585933 29586027 -159693527 - L1MEc LINE L1 -4027 2369 2274 810 240 124 103 chr6 29586574 29587058 -159692496 + MLT1D LTR MaLR 12 505 0 209 237 0 0 chr6 29587199 29587237 -159692317 - L3 LINE CR1 -23 1554 1517 21 0 0 0 chr6 29588213 29588234 -159691320 + AT_rich Low_complexity Low_complexity 1 21 0 305 261 14 0 chr6 29589194 29589263 -159690291 - MIR SINE MIR 0 262 193 2235 111 0 0 chr6 29589390 29589687 -159689867 + AluSc SINE Alu 1 297 -12 36 40 0 0 chr6 29589747 29589797 -159689757 + AT_rich Low_complexity Low_complexity 1 50 0 304 323 71 35 chr6 29589886 29590112 -159689442 - L1M4 LINE L1 -2547 3599 3366 498 313 58 26 chr6 29590115 29590428 -159689126 - L1M4 LINE L1 -2839 3307 2985 2366 88 0 3 chr6 29591644 29591940 -159687614 - AluSc SINE Alu -14 295 1 255 219 125 55 chr6 29592129 29592257 -159687297 - L1ME LINE L1 -426 5695 5559 1599 155 115 57 chr6 29592410 29592835 -159686719 - LTR7 LTR ERV1 0 450 1 321 286 41 34 chr6 29592850 29592997 -159686557 - L1ME LINE L1 -808 5338 5191 448 241 0 75 chr6 29593112 29593245 -159686309 + L2 LINE L2 2622 2744 -570 971 182 0 27 chr6 29593245 29593432 -159686122 + FRAM SINE Alu 1 176 0 900 300 101 14 chr6 29593445 29593840 -159685714 + L2 LINE L2 2746 3213 -100 321 26 0 0 chr6 29593840 29593878 -159685676 + (CA)n Simple_repeat Simple_repeat 1 38 0 900 300 101 14 chr6 29593878 29593975 -159685579 + L2 LINE L2 3213 3300 -13 714 279 150 26 chr6 29594002 29594454 -159685100 + L1MC4a LINE L1 5433 5940 -1868 270 333 31 0 chr6 29595200 29595296 -159684258 - MIR SINE MIR 0 262 164 252 0 0 0 chr6 29595404 29595432 -159684122 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 577 279 62 75 chr6 29595990 29596392 -159683162 + L3 LINE CR1 1102 1498 -79 1156 153 190 4 chr6 29596393 29596672 -159682882 - MER33 DNA MER1_type -1 323 1 240 234 31 0 chr6 29596682 29596746 -159682808 + L3 LINE CR1 1509 1574 -3 1742 197 56 19 chr6 29597427 29597803 -159681751 - MLT1B LTR MaLR 0 390 1 866 182 0 0 chr6 29598331 29598463 -159681091 - FLAM_C SINE Alu 0 133 2 282 342 36 27 chr6 29598478 29598589 -159680965 - L2 LINE L2 0 3272 3161 323 272 12 0 chr6 29598840 29598921 -159680633 + MER5A DNA MER1_type 108 189 0 243 250 0 75 chr6 29600452 29600532 -159679022 + MIR SINE MIR 82 155 -107 1197 176 9 27 chr6 29600735 29600957 -159678597 + AluJo SINE Alu 81 298 -14 494 125 164 29 chr6 29601143 29601237 -159678317 - MER3 DNA MER1_type -13 149 38 1520 134 134 4 chr6 29601237 29601498 -159678056 - AluSx SINE Alu -17 295 1 1489 166 20 71 chr6 29601820 29602116 -159677438 - AluJo SINE Alu -31 281 1 1334 146 127 8 chr6 29602650 29602903 -159676651 - MER1B DNA MER1_type -1 338 56 201 254 18 18 chr6 29602937 29602992 -159676562 - L2 LINE L2 -3 3310 3256 206 118 0 0 chr6 29603475 29603509 -159676045 + (A)n Simple_repeat Simple_repeat 1 34 0 1247 108 29 117 chr6 29604258 29604498 -159675056 - MER20 DNA MER1_type 0 219 1 2181 90 23 19 chr6 29604576 29604886 -159674668 + AluSp SINE Alu 1 311 -2 361 183 247 11 chr6 29605166 29605259 -159674295 + MER3 DNA MER1_type 38 152 -57 * 1211 162 141 18 chr6 29605254 29605594 -159673960 + MER3 DNA MER1_type 2232 2613 0 818 319 161 10 chr6 29605624 29606034 -159673520 - L2 LINE L2 -341 2973 2502 321 218 26 0 chr6 29606076 29606154 -159673400 - MER116 DNA Mariner 0 80 1 902 228 44 5 chr6 29606440 29606646 -159672908 + MIR SINE MIR 21 234 -28 488 291 14 30 chr6 29607713 29607902 -159671652 + MIR SINE MIR 21 205 -57 1068 207 126 59 chr6 29608832 29609269 -159670285 - LTR40a LTR ERVL -12 507 1 27 81 0 0 chr6 29609313 29609375 -159670179 + AT_rich Low_complexity Low_complexity 1 62 0 744 181 103 25 chr6 29609674 29609992 -159669562 - L1ME LINE L1 -698 5468 5128 1973 141 10 0 chr6 29610182 29610481 -159669073 - AluJb SINE Alu -10 302 1 1531 119 82 101 chr6 29610985 29611303 -159668251 + AluJo SINE Alu 1 312 0 595 145 0 0 chr6 29613677 29613760 -159665794 + 7SLRNA srpRNA srpRNA 217 299 -21 24 0 0 0 chr6 29613760 29613784 -159665770 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 29614004 29614028 -159665526 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 29614037 29614077 -159665477 + AT_rich Low_complexity Low_complexity 1 40 0 2544 47 0 0 chr6 29614959 29615255 -159664299 + AluY SINE Alu 1 296 -15 956 179 80 47 chr6 29615278 29615490 -159664064 - MER20 DNA MER1_type 0 219 1 1094 248 62 58 chr6 29615708 29616156 -159663398 - MLT1C LTR MaLR -14 453 4 2951 212 145 25 chr6 29616637 29617790 -159661764 + L1ME LINE L1 4470 5770 -396 325 173 0 0 chr6 29617805 29617857 -159661697 - L1ME1 LINE L1 -232 5934 5883 195 363 89 17 chr6 29618173 29618352 -159661202 - L2 LINE L2 -2054 1260 1069 302 361 69 0 chr6 29619195 29619339 -159660215 - MIR SINE MIR -74 188 35 682 37 0 0 chr6 29620024 29620106 -159659448 - L1PA2 LINE L1 0 6155 6074 2476 192 102 65 chr6 29620164 29620965 -159658589 - L1MC4 LINE L1 -180 7862 7032 1164 223 148 31 chr6 29622028 29622473 -159657081 - L1MC4 LINE L1 -98 7710 7334 1940 83 0 0 chr6 29622549 29622790 -159656764 + AluY SINE Alu 1 241 -70 1295 209 8 0 chr6 29622790 29623039 -159656515 - L1MC4 LINE L1 -1097 6945 6695 1366 160 9 0 chr6 29623043 29623255 -159656299 + MLT1A1 LTR MaLR 147 360 -5 861 124 0 15 chr6 29624290 29624427 -159655127 - Tigger5 DNA MER2_type -143 2180 2046 180 0 0 0 chr6 29624831 29624851 -159654703 + (A)n Simple_repeat Simple_repeat 1 20 0 2225 119 0 0 chr6 29625230 29625523 -159654031 + AluSx SINE Alu 1 293 -19 1578 114 30 25 chr6 29625835 29626072 -159653482 - AluSx SINE Alu -74 238 1 597 217 29 7 chr6 29626078 29626216 -159653338 - L1MC4 LINE L1 -1036 7006 6866 326 159 48 0 chr6 29630294 29630357 -159649197 - MARNA DNA Mariner -23 563 498 273 265 195 25 chr6 29630408 29630608 -159648946 + MARNA DNA Mariner 170 403 -183 260 184 0 0 chr6 29631229 29631267 -159648287 - 5S rRNA rRNA -83 38 1 724 232 168 5 chr6 29631913 29631986 -159647568 - MIR SINE MIR 0 262 202 2774 71 22 25 chr6 29631986 29632351 -159647203 - THE1B LTR MaLR 0 364 1 724 232 168 5 chr6 29632351 29632497 -159647057 - MIR SINE MIR -60 202 7 433 291 61 102 chr6 29633916 29634425 -159645129 + L2 LINE L2 2817 3304 -9 845 139 21 93 chr6 29634746 29634889 -159644665 + MER20 DNA MER1_type 36 163 -56 180 111 0 0 chr6 29634889 29634916 -159644638 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 845 139 21 93 chr6 29634916 29634966 -159644588 + MER20 DNA MER1_type 163 215 -4 1211 163 143 43 chr6 29635645 29635903 -159643651 + AluJo SINE Alu 3 286 -26 488 181 254 0 chr6 29637924 29638062 -159641492 + MIR SINE MIR 69 241 -21 2400 76 0 0 chr6 29638716 29639007 -159640547 - AluSg SINE Alu -19 291 1 414 293 179 33 chr6 29639022 29639480 -159640074 - L1M4 LINE L1 -1066 5080 4556 304 311 30 15 chr6 29639970 29640105 -159639449 + CT-rich Low_complexity Low_complexity 1 137 0 807 182 105 8 chr6 29640303 29640518 -159639036 - L1MC3 LINE L1 -290 7518 7269 22 35 0 0 chr6 29641013 29641042 -159638512 + AT_rich Low_complexity Low_complexity 1 29 0 989 181 0 0 chr6 29641084 29641244 -159638310 - AluJb SINE Alu -5 307 148 191 282 154 0 chr6 29643174 29643252 -159636302 - L2 LINE L2 -932 2382 2293 1672 202 7 0 chr6 29643347 29643654 -159635900 - AluJo SINE Alu -3 309 1 631 199 76 6 chr6 29645142 29645313 -159634241 + LTR40c LTR ERVL 5 187 -278 2225 252 89 24 chr6 29645365 29645927 -159633627 - L1M4 LINE L1 -860 5286 4762 2454 226 79 12 chr6 29645927 29646572 -159632982 + MER76 LTR ERV 1 688 0 2225 252 89 24 chr6 29646572 29647141 -159632413 - L1M4 LINE L1 -1384 4762 4081 302 301 0 0 chr6 29647354 29647427 -159632127 - MER2 DNA MER2_type -1 344 272 201 74 0 0 chr6 29647438 29647465 -159632089 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 964 149 96 5 chr6 29647705 29647893 -159631661 - MER2 DNA MER2_type -139 206 2 559 267 0 14 chr6 29647898 29648044 -159631510 + MER82 DNA MER2_type 1 144 -509 731 169 23 0 chr6 29648129 29648259 -159631295 + FLAM_C SINE Alu 1 133 0 1399 82 0 0 chr6 29648482 29648653 -159630901 - AluSp SINE Alu -7 306 136 1278 178 55 4 chr6 29648759 29649034 -159630520 + MER82 DNA MER2_type 202 490 -163 1198 202 184 28 chr6 29649042 29649478 -159630076 - MLT1D LTR MaLR -1 504 1 335 284 63 0 chr6 29649779 29649906 -159629648 - L1ME3A LINE L1 -9 6161 6027 369 199 154 7 chr6 29649925 29650061 -159629493 - L1ME3A LINE L1 -203 5967 5812 1741 201 0 0 chr6 29650704 29651012 -159628542 - AluSx SINE Alu -4 308 1 252 0 0 0 chr6 29651791 29651819 -159627735 + (A)n Simple_repeat Simple_repeat 1 28 0 307 333 0 0 chr6 29652334 29652415 -159627139 + L2 LINE L2 3186 3266 -6 289 276 26 60 chr6 29652402 29652518 -159627036 + L3 LINE CR1 532 643 -934 * 302 293 77 58 chr6 29652713 29652921 -159626633 - L1ME3A LINE L1 -350 5820 5609 895 227 153 109 chr6 29653264 29653400 -159626154 - L2 LINE L2 -341 2973 2844 2179 132 7 0 chr6 29653400 29653710 -159625844 + AluSx SINE Alu 1 312 0 895 227 153 109 chr6 29653710 29654070 -159625484 - L2 LINE L2 -470 2844 2455 1628 164 14 38 chr6 29654074 29654367 -159625187 + AluJb SINE Alu 1 286 -26 235 201 90 118 chr6 29654400 29654544 -159625010 - L2 LINE L2 -855 2459 2320 1748 141 29 58 chr6 29654742 29655054 -159624500 - AluJb SINE Alu -9 303 1 2074 73 62 4 chr6 29656082 29656356 -159623198 + AluSc SINE Alu 1 290 -19 444 260 125 45 chr6 29656452 29656797 -159622757 + L1MEd LINE L1 955 1370 -4759 1908 152 31 0 chr6 29656797 29657086 -159622468 - AluJb SINE Alu -13 299 2 444 260 125 45 chr6 29657086 29657283 -159622271 + L1MEd LINE L1 1370 1550 -4579 443 246 8 39 chr6 29657315 29657430 -159622124 + L1MEc LINE L1 729 841 -5766 1442 226 56 86 chr6 29657430 29657951 -159621603 - MLT1D LTR MaLR 0 505 1 443 246 8 39 chr6 29657951 29657965 -159621589 + L1MEc LINE L1 841 854 -5753 868 174 0 128 chr6 29657987 29658033 -159621521 - MLT1A2 LTR MaLR -160 214 164 2636 58 0 0 chr6 29658033 29658344 -159621210 + AluY SINE Alu 1 311 0 868 174 0 128 chr6 29658344 29658539 -159621015 - MLT1A2 LTR MaLR -210 164 4 1782 169 248 6 chr6 29658543 29659063 -159620491 + L1MEc LINE L1 1249 1894 -4532 952 79 39 0 chr6 29659064 29659191 -159620363 + AluSp SINE Alu 1 132 -181 2255 95 7 0 chr6 29659194 29659499 -159620055 + AluY SINE Alu 2 308 -3 342 313 18 49 chr6 29659506 29659669 -159619885 - L1ME4a LINE L1 -95 6026 5869 254 262 105 38 chr6 29659792 29660002 -159619552 - L1MC5 LINE L1 -427 7534 7311 938 268 51 65 chr6 29660069 29660898 -159618656 - L1MC4 LINE L1 -672 7370 6536 783 309 148 31 chr6 29661228 29662026 -159617528 - L1MEc LINE L1 -3176 2970 2114 185 247 0 32 chr6 29662033 29662126 -159617428 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 1534 235 108 16 chr6 29662212 29662655 -159616899 - MLT1E LTR MaLR 0 593 110 1843 175 58 26 chr6 29665166 29665594 -159613960 + MER63 DNA MER1_type 475 916 -144 943 140 40 7 chr6 29665608 29665758 -159613796 + FRAM SINE Alu 1 153 -23 251 204 230 0 chr6 29665760 29665873 -159613681 + MER63 DNA MER1_type 922 1060 -1 282 202 3 3 chr6 29665875 29665947 -159613607 - L1MC4 LINE L1 -343 5823 5767 * 1823 181 25 0 chr6 29665939 29666304 -159613250 - L1MD1 LINE L1 -273 6363 5990 194 0 39 0 chr6 29666304 29666330 -159613224 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1899 121 15 0 chr6 29666335 29666599 -159612955 - AluSx SINE Alu -44 268 1 1309 49 6 0 chr6 29666635 29666797 -159612757 + AluY SINE Alu 147 309 -2 1102 199 107 28 chr6 29666803 29667339 -159612215 - L1MD1 LINE L1 -650 5986 5417 979 198 0 17 chr6 29667348 29667520 -159612034 - AluJb SINE Alu -2 310 142 598 174 17 26 chr6 29667532 29667647 -159611907 - AluJo SINE Alu -101 211 98 1538 144 98 0 chr6 29667720 29667984 -159611570 + AluJo SINE Alu 1 290 -22 2742 207 63 50 chr6 29668001 29668110 -159611444 - L1MD1 LINE L1 -2663 3877 3771 1632 169 14 20 chr6 29668110 29668406 -159611148 + AluJo SINE Alu 3 296 -16 2742 207 63 50 chr6 29668406 29669435 -159610119 - L1MD1 LINE L1 -2769 3771 2757 2237 110 0 0 chr6 29669435 29669725 -159609829 - AluSx SINE Alu -22 290 1 2185 127 0 0 chr6 29669733 29670024 -159609530 - AluSx SINE Alu -21 291 1 2742 207 63 50 chr6 29670024 29670472 -159609082 - L1MD1 LINE L1 -3789 2751 2310 1404 189 89 0 chr6 29670472 29670643 -159608911 - AluJo SINE Alu -7 305 98 198 0 0 0 chr6 29670643 29670665 -159608889 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1404 189 89 0 chr6 29670665 29670773 -159608781 - AluJo SINE Alu -214 98 1 2742 207 63 50 chr6 29670773 29672702 -159606852 - L1MD1 LINE L1 -4230 2310 1 268 167 14 56 chr6 29673724 29673796 -159605758 + L2 LINE L2 2430 2498 -816 559 279 59 44 chr6 29673863 29674067 -159605487 - L2 LINE L2 -1 3312 3106 2439 127 30 48 chr6 29674113 29674547 -159605007 - MSTB LTR MaLR 0 426 1 27 0 0 0 chr6 29674755 29674782 -159604772 + AT_rich Low_complexity Low_complexity 1 27 0 588 163 0 0 chr6 29674782 29674874 -159604680 - Tigger7 DNA MER2_type 0 2491 2400 * 2904 175 23 2 chr6 29674868 29675382 -159604172 - Tigger7 DNA MER2_type -1961 526 2 3585 161 14 3 chr6 29675385 29676043 -159603511 - L1MB2 LINE L1 -22 6149 5485 609 58 0 0 chr6 29676076 29676162 -159603392 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 180 111 0 0 chr6 29676318 29676345 -159603209 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3438 226 21 16 chr6 29677642 29678001 -159601553 - MER21B LTR ERV1 -21 842 486 503 0 0 31 chr6 29678001 29678065 -159601489 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 3438 226 21 16 chr6 29678065 29678474 -159601080 - MER21B LTR ERV1 -377 486 70 394 253 11 0 chr6 29678510 29678597 -159600957 - MER21B LTR ERV1 -757 106 19 1702 180 51 18 chr6 29678616 29679293 -159600261 + L1MC1 LINE L1 1437 2243 -4183 1954 87 0 20 chr6 29679293 29679547 -159600007 + AluSc SINE Alu 54 302 -7 1702 180 51 18 chr6 29679547 29679625 -159599929 + L1MC1 LINE L1 2243 2317 -4109 4831 147 53 17 chr6 29679625 29680500 -159599054 + L1MC1 LINE L1 5702 6607 -6 246 156 0 0 chr6 29680619 29680664 -159598890 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 287 43 9 chr6 29683034 29683226 -159596328 + MIR SINE MIR 3 262 0 355 283 65 7 chr6 29683736 29683874 -159595680 - L1MC5 LINE L1 -51 7910 7765 196 385 44 7 chr6 29684899 29685034 -159594520 + L2 LINE L2 2337 2476 -838 563 200 9 9 chr6 29685034 29685144 -159594410 + MER81 DNA DNA 5 114 0 502 335 37 0 chr6 29685172 29685360 -159594194 + L2 LINE L2 2521 2715 -599 205 241 145 0 chr6 29685564 29685647 -159593907 + L2 LINE L2 1906 2000 -1314 305 316 5 87 chr6 29686124 29686186 -159593368 - L1MC4a LINE L1 -1897 5911 5846 2144 116 3 0 chr6 29686186 29686479 -159593075 + AluSx SINE Alu 1 294 -18 305 316 5 87 chr6 29686479 29686612 -159592942 - L1MC4a LINE L1 -1962 5846 5732 213 65 0 0 chr6 29686815 29686846 -159592708 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1770 135 10 17 chr6 29686849 29687138 -159592416 - AluJb SINE Alu -25 287 1 189 276 80 80 chr6 29687775 29687938 -159591616 + MIR SINE MIR 56 218 -44 736 12 0 0 chr6 29688004 29688086 -159591468 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 265 219 85 0 chr6 29688954 29689036 -159590518 + L1MC4a LINE L1 5854 5942 -1866 2086 129 0 3 chr6 29689589 29689912 -159589642 + AluSx SINE Alu 1 312 0 512 200 357 7 chr6 29689943 29690083 -159589471 + MER5A DNA MER1_type 1 189 0 455 220 46 0 chr6 29690604 29690713 -159588841 - LTR65 LTR ERV1 -506 163 50 183 42 0 0 chr6 29690742 29690766 -159588788 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 265 191 147 0 chr6 29690911 29690979 -159588575 + MER53 DNA DNA 1 78 -111 351 0 0 0 chr6 29691832 29691871 -159587683 + (CA)n Simple_repeat Simple_repeat 1 39 0 202 172 0 35 chr6 29692513 29692571 -159586983 + T-rich Low_complexity Low_complexity 5 60 0 509 268 155 36 chr6 29694091 29694285 -159585269 + L1MC/D LINE L1 5600 5816 -1992 1688 156 0 66 chr6 29694418 29694738 -159584816 + AluSx SINE Alu 1 299 -13 966 223 93 40 chr6 29694870 29695170 -159584384 + MER46C DNA MER2_type 1 316 -22 5401 138 32 22 chr6 29695188 29696092 -159583462 - MER49 LTR ERV1 -8 915 3 582 262 97 0 chr6 29696104 29696341 -159583213 - L1MC5 LINE L1 -83 7878 7619 24 0 0 0 chr6 29696399 29696423 -159583131 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr6 29696529 29696556 -159582998 + (A)n Simple_repeat Simple_repeat 1 27 0 551 322 34 0 chr6 29696623 29696828 -159582726 - HERVL LTR ERVL -1236 4418 4207 789 250 16 21 chr6 29696960 29697148 -159582406 - LTR39 LTR ERV1 0 783 597 1292 149 12 132 chr6 29697224 29697404 -159582150 - LTR39 LTR ERV1 -482 301 180 2982 6 0 0 chr6 29697404 29697722 -159581832 - AluYb8 SINE Alu 0 318 1 1292 149 12 132 chr6 29697722 29697883 -159581671 - LTR39 LTR ERV1 -603 180 1 460 202 65 65 chr6 29697886 29698054 -159581500 - HERVL LTR ERVL -1674 4090 3923 684 122 37 18 chr6 29698054 29698218 -159581336 + CT-rich Low_complexity Low_complexity 2 168 0 1446 117 57 45 chr6 29699192 29699456 -159580098 + AluJo SINE Alu 1 267 -45 338 202 0 11 chr6 29699551 29699640 -159579914 + GA-rich Low_complexity Low_complexity 3 90 0 237 298 58 94 chr6 29700766 29700957 -159578597 - MER5A DNA MER1_type 0 189 6 343 200 60 20 chr6 29701049 29701149 -159578405 + MIR SINE MIR 86 189 -73 338 272 49 103 chr6 29701482 29701618 -159577936 - MIR SINE MIR -79 183 58 875 213 24 12 chr6 29701618 29701782 -159577772 + FRAM SINE Alu 1 166 0 338 272 49 103 chr6 29701782 29701829 -159577725 - MIR SINE MIR -204 58 10 21 0 0 0 chr6 29701950 29701971 -159577583 + AT_rich Low_complexity Low_complexity 1 21 0 587 275 39 64 chr6 29703062 29703211 -159576343 + MIR SINE MIR 8 150 -112 1615 190 62 32 chr6 29703211 29703585 -159575969 - MLT1B LTR MaLR -4 386 2 587 275 39 64 chr6 29703585 29703668 -159575886 + MIR SINE MIR 150 234 -28 220 147 0 0 chr6 29704416 29704450 -159575104 - L2 LINE L2 -6 3307 3274 269 294 27 41 chr6 29704666 29704812 -159574742 - L1ME4a LINE L1 -43 6078 5935 2541 66 0 0 chr6 29704822 29705124 -159574430 - AluY SINE Alu -9 302 1 751 306 61 48 chr6 29705582 29705958 -159573596 - L2 LINE L2 -34 3279 2899 3481 146 11 30 chr6 29705977 29706433 -159573121 - MER44D DNA MER2_type -1883 604 105 1950 99 81 32 chr6 29706433 29706716 -159572838 + AluSg SINE Alu 2 298 -12 3481 146 11 30 chr6 29706716 29706819 -159572735 - MER44D DNA MER2_type -2382 105 1 2058 137 3 0 chr6 29707017 29707316 -159572238 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr6 29708365 29708390 -159571164 + AT_rich Low_complexity Low_complexity 1 25 0 276 288 18 45 chr6 29708664 29708775 -159570779 - MIR SINE MIR -66 196 89 473 204 62 0 chr6 29708794 29708907 -159570647 - L1MD3 LINE L1 -1 7994 7875 1499 168 45 17 chr6 29709214 29709505 -159570049 + AluJo SINE Alu 2 300 -12 3245 71 2 7 chr6 29710003 29710423 -159569131 - MER4E LTR ERV1 0 766 349 1064 214 106 101 chr6 29710928 29711372 -159568182 - LTR16A1 LTR ERVL -3 454 9 2257 149 87 21 chr6 29711472 29711964 -159567590 - Tigger3(Golem) DNA MER2_type -16 3013 94 725 313 94 3 chr6 29712454 29712796 -159566758 - L1M4 LINE L1 -1920 4226 3854 1775 123 115 7 chr6 29712886 29713155 -159566399 - AluSg1 SINE Alu -11 298 1 277 301 131 35 chr6 29713155 29713437 -159566117 - L1M4 LINE L1 -3569 2577 2269 2889 147 19 2 chr6 29713526 29713947 -159565607 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 29713994 29714015 -159565539 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 29714161 29714192 -159565362 + AT_rich Low_complexity Low_complexity 1 31 0 205 178 0 44 chr6 29714626 29714671 -159564883 + (TTA)n Simple_repeat Simple_repeat 1 43 0 500 45 0 15 chr6 29714939 29715005 -159564549 - L1PA15 LINE L1 -4 6161 6097 988 259 66 54 chr6 29715064 29715381 -159564173 - L2 LINE L2 -473 2841 2521 244 289 144 10 chr6 29715425 29715522 -159564032 + L2 LINE L2 3160 3269 -3 207 0 0 0 chr6 29717724 29717747 -159561807 + (CA)n Simple_repeat Simple_repeat 2 24 0 2174 136 0 0 chr6 29718622 29718932 -159560622 - AluSx SINE Alu -2 310 1 355 321 67 21 chr6 29721404 29721597 -159557957 + MIR3 SINE MIR 3 204 -4 250 191 21 0 chr6 29721670 29721717 -159557837 - L2 LINE L2 -16 3256 3209 1692 174 13 7 chr6 29723514 29723824 -159555730 + AluSx SINE Alu 1 312 0 579 238 101 5 chr6 29724219 29724408 -159555146 + L2 LINE L2 3106 3312 -1 248 241 92 11 chr6 29724857 29724944 -159554610 - MIR SINE MIR -21 241 148 2446 79 0 3 chr6 29725031 29725336 -159554218 - AluSp SINE Alu -9 304 1 433 242 20 0 chr6 29725351 29725450 -159554104 - MIR SINE MIR -155 107 7 381 256 23 23 chr6 29725526 29725659 -159553895 + MIR SINE MIR 124 256 -6 221 315 72 9 chr6 29725725 29725836 -159553718 - MIR SINE MIR -59 149 32 1879 224 75 13 chr6 29725960 29726438 -159553116 + Charlie4a DNA MER1_type 1 508 0 465 184 98 110 chr6 29727952 29728115 -159551439 + MIR SINE MIR 78 238 -24 577 197 33 25 chr6 29728540 29728662 -159550892 + MER5B DNA MER1_type 2 124 -54 1036 150 0 6 chr6 29728665 29728832 -159550722 - AluSx SINE Alu -5 305 140 689 105 0 0 chr6 29728832 29728918 -159550636 - AluSx SINE Alu -226 87 2 203 250 0 0 chr6 29728919 29728959 -159550595 + MER5B DNA MER1_type 132 171 -7 253 235 59 0 chr6 29728963 29729031 -159550523 + L1MC5 LINE L1 7372 7443 -518 3038 170 6 8 chr6 29729032 29729519 -159550035 - MER66B LTR ERV1 0 486 1 3821 119 17 0 chr6 29729519 29730056 -159549498 - MER66B-int LTR ERV1 0 6676 6131 2587 174 28 2 chr6 29730063 29730493 -159549061 - MER66-int LTR ERV1 -3892 2784 2344 2259 195 46 2 chr6 29730498 29730908 -159548646 - MER66-int LTR ERV1 -4514 2162 1735 344 240 39 10 chr6 29730912 29731016 -159548538 + L1MC4 LINE L1 7790 7896 -146 1581 184 3 32 chr6 29731107 29731423 -159548131 + AluJb SINE Alu 1 307 -5 1242 215 24 0 chr6 29731747 29731993 -159547561 + MER58 DNA MER1_type 1 252 -2168 674 109 12 260 chr6 29731991 29732152 -159547402 + MER58 DNA MER1_type 2166 2201 -219 * 2787 84 21 8 chr6 29732152 29732531 -159547023 + L1PA8 LINE L1 5785 6168 -4 674 109 12 260 chr6 29732531 29732707 -159546847 + MER58 DNA MER1_type 2201 2419 -1 1514 169 48 14 chr6 29733463 29733753 -159545801 + AluJo SINE Alu 1 300 -12 219 189 0 0 chr6 29735014 29735067 -159544487 + GA-rich Low_complexity Low_complexity 2 54 0 269 379 17 0 chr6 29736229 29736345 -159543209 - MLT1K LTR MaLR -292 296 179 630 202 37 0 chr6 29736680 29736789 -159542765 + FLAM_C SINE Alu 3 115 -28 432 0 0 0 chr6 29736789 29736837 -159542717 + (CA)n Simple_repeat Simple_repeat 1 48 0 1834 137 24 27 chr6 29736839 29737248 -159542306 - LTR46 LTR ERV1 0 460 1 387 293 50 0 chr6 29737726 29737866 -159541688 - L1MC4a LINE L1 -1894 5914 5768 463 274 145 36 chr6 29738051 29738299 -159541255 - L2 LINE L2 -22 3291 3017 428 233 82 65 chr6 29738357 29738602 -159540952 - L1MC4a LINE L1 -2297 5511 5263 633 216 0 0 chr6 29738850 29738961 -159540593 + AluJb SINE Alu 194 304 -8 646 134 0 31 chr6 29739730 29739827 -159539727 + FRAM SINE Alu 64 157 -19 352 324 94 0 chr6 29740630 29740800 -159538754 + L2 LINE L2 3119 3304 -9 1459 150 0 13 chr6 29740832 29741059 -159538495 + AluJb SINE Alu 7 230 -82 617 115 15 85 chr6 29741065 29741195 -159538359 + AluJb SINE Alu 191 311 -1 724 261 93 19 chr6 29741659 29741874 -159537680 - MIR SINE MIR -29 233 3 1659 217 92 31 chr6 29742372 29742851 -159536703 + Charlie4a DNA MER1_type 1 508 0 1114 198 25 33 chr6 29743825 29744004 -159535550 + MLT1E2 LTR MaLR 386 564 -62 2145 120 13 28 chr6 29744004 29744321 -159535233 - AluSx SINE Alu 0 312 1 1114 198 25 33 chr6 29744321 29744384 -159535170 + MLT1E2 LTR MaLR 564 626 0 586 242 155 0 chr6 29744382 29744576 -159534978 - MER2 DNA MER2_type 0 345 122 * 875 171 0 19 chr6 29744577 29744735 -159534819 + FRAM SINE Alu 1 154 -22 694 186 23 16 chr6 29744736 29744865 -159534689 - MER2 DNA MER2_type -215 130 1 533 226 266 23 chr6 29745500 29745677 -159533877 + MIR SINE MIR 15 234 -28 980 263 138 19 chr6 29745677 29745996 -159533558 + LTR18A LTR ERVL 1 357 0 1500 197 13 16 chr6 29746002 29746307 -159533247 + HERVL18 LTR ERVL 1 304 -5743 1467 197 19 4 chr6 29746289 29746558 -159532996 + HERVL18 LTR ERVL 492 764 -5283 * 499 206 0 0 chr6 29746565 29746657 -159532897 + HERVL18 LTR ERVL 871 962 -5085 * 1171 172 3 16 chr6 29746644 29747006 -159532548 + HERVL18 LTR ERVL 1390 1810 -4237 * 1485 136 23 12 chr6 29747005 29747303 -159532251 + HERVL18 LTR ERVL 2119 2477 -3570 * 5473 161 15 8 chr6 29747277 29748135 -159531419 + HERVL18 LTR ERVL 2718 3581 -2466 629 130 11 0 chr6 29748135 29748227 -159531327 + HERVL18 LTR ERVL 4394 4486 -1561 257 339 0 0 chr6 29748229 29748288 -159531266 + HERVL18 LTR ERVL 5209 5267 -780 2428 149 196 40 chr6 29748531 29749062 -159530492 + LTR18B LTR ERVL 1 614 0 280 332 187 21 chr6 29749126 29749361 -159530193 + L2 LINE L2 2122 2395 -919 2467 80 0 19 chr6 29749660 29749973 -159529581 + AluSc SINE Alu 1 307 -2 672 199 5 108 chr6 29750295 29750380 -159529174 + MER5B DNA MER1_type 5 62 -116 1488 153 18 0 chr6 29750380 29750602 -159528952 + AluSx SINE Alu 3 228 -84 672 199 5 108 chr6 29750602 29750702 -159528852 + MER5B DNA MER1_type 62 171 -7 563 221 45 111 chr6 29750705 29751154 -159528400 + L1MC5 LINE L1 7375 7793 -168 262 199 35 28 chr6 29751193 29751334 -159528220 + GA-rich Low_complexity Low_complexity 5 146 0 337 214 34 43 chr6 29751338 29751455 -159528099 + L1MC5 LINE L1 7810 7925 -36 318 275 99 8 chr6 29751758 29751889 -159527665 + L1MC4a LINE L1 6441 6583 -1225 855 224 20 5 chr6 29752310 29752506 -159527048 - MIR SINE MIR -52 210 12 261 57 0 0 chr6 29752810 29752845 -159526709 + (CA)n Simple_repeat Simple_repeat 1 35 0 312 273 67 34 chr6 29753131 29753340 -159526214 + L1MC4a LINE L1 5871 6086 -1722 417 197 0 34 chr6 29753663 29753841 -159525713 + (TA)n Simple_repeat Simple_repeat 2 173 0 247 143 5 102 chr6 29753832 29754028 -159525526 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 * 1173 296 67 48 chr6 29754080 29755214 -159524340 + L1MC/D LINE L1 4532 5676 -553 438 213 64 176 chr6 29755214 29755676 -159523878 - L2 LINE L2 -17 3296 2834 384 341 66 2 chr6 29755691 29755961 -159523593 - LTR16A LTR ERVL -51 399 73 2156 112 3 29 chr6 29756270 29756584 -159522970 + AluSx SINE Alu 1 306 -6 986 295 97 87 chr6 29756610 29757754 -159521800 - HERVL LTR ERVL -550 5104 3634 1857 160 3 49 chr6 29757754 29758079 -159521475 - AluSx SINE Alu -2 310 1 986 295 97 87 chr6 29758079 29758505 -159521049 - HERVL LTR ERVL -2020 3634 3214 2578 291 70 54 chr6 29758745 29759099 -159520455 - HERVL LTR ERVL -2158 2838 2491 2282 64 61 10 chr6 29759099 29759395 -159520159 + AluY SINE Alu 1 311 0 2578 291 70 54 chr6 29759395 29760193 -159519361 - HERVL LTR ERVL -2505 2491 1667 842 312 54 9 chr6 29760218 29760535 -159519019 - HERVL LTR ERVL -3933 1063 733 690 325 50 14 chr6 29760568 29760848 -159518706 - HERVL LTR ERVL -4343 653 364 465 271 0 8 chr6 29760979 29761097 -159518457 + LTR40c LTR ERVL 3 119 -346 868 335 65 29 chr6 29761097 29761338 -159518216 - L1M3c LINE L1 -5701 440 176 1843 209 19 8 chr6 29761338 29761697 -159517857 + MLT1A1 LTR MaLR 3 365 0 868 335 65 29 chr6 29761697 29761870 -159517684 - L1M3c LINE L1 -5965 176 11 627 239 36 112 chr6 29761875 29762268 -159517286 + L1MEc LINE L1 1704 2156 -4451 2507 109 33 14 chr6 29762268 29762636 -159516918 - THE1C LTR MaLR 0 375 1 627 239 36 112 chr6 29762636 29762691 -159516863 + L1MEc LINE L1 2156 2214 -4393 311 194 0 0 chr6 29762721 29762783 -159516771 + L1MEc LINE L1 2205 2266 -4341 355 252 71 47 chr6 29762838 29762965 -159516589 + MER69 DNA AcHobo 1 130 -1096 605 249 51 55 chr6 29762985 29763202 -159516352 + MER69 DNA AcHobo 51 266 -960 1916 192 76 25 chr6 29763214 29763339 -159516215 + MER69 DNA AcHobo 1458 1575 -951 1911 118 33 0 chr6 29763339 29763610 -159515944 + AluSx SINE Alu 1 280 -32 1916 192 76 25 chr6 29763610 29764296 -159515258 + MER69 DNA AcHobo 1575 2384 -142 744 201 49 42 chr6 29764297 29764441 -159515113 + FRAM SINE Alu 1 143 -33 1602 183 56 0 chr6 29764526 29764810 -159514744 - AluSx SINE Alu -12 300 1 407 189 9 66 chr6 29764810 29764832 -159514722 + MER69 DNA AcHobo 2396 2418 -108 1488 185 61 14 chr6 29764832 29765148 -159514406 - AluJo SINE Alu 0 312 1 407 189 9 66 chr6 29765148 29765231 -159514323 + MER69 DNA AcHobo 2418 2495 -31 246 366 89 0 chr6 29765246 29765369 -159514185 + L2 LINE L2 3180 3313 0 511 335 67 0 chr6 29765413 29765592 -159513962 + L2 LINE L2 2553 2743 -571 4573 144 24 34 chr6 29767011 29767807 -159511747 - LTR25 LTR ERV1 -6 788 1 244 281 110 61 chr6 29768020 29768365 -159511189 - L1MC5 LINE L1 -237 7724 7363 672 304 118 38 chr6 29768978 29769620 -159509934 + L2 LINE L2 2637 3311 -2 341 274 53 0 chr6 29770334 29770429 -159509125 - MIR SINE MIR -11 251 152 308 282 0 13 chr6 29770890 29770968 -159508586 - L2 LINE L2 0 3313 3237 1327 106 6 0 chr6 29772254 29772433 -159507121 - MER46A DNA MER2_type 0 236 57 339 257 188 93 chr6 29772496 29772979 -159506575 - MLT1H LTR MaLR 0 549 21 1462 215 19 48 chr6 29773710 29774001 -159505553 - MLT1F1 LTR MaLR 0 542 174 9476 54 1 1 chr6 29774001 29775072 -159504482 + MER11C LTR ERVK 1 1071 0 1462 215 19 48 chr6 29775072 29775191 -159504363 - MLT1F1 LTR MaLR -368 174 53 915 256 14 5 chr6 29775589 29775808 -159503746 + MIR SINE MIR 5 225 -37 530 268 174 14 chr6 29777797 29778010 -159501544 + MIR SINE MIR 16 262 0 407 268 143 42 chr6 29778358 29778526 -159501028 - MER5A DNA MER1_type -1 188 4 940 244 76 60 chr6 29779515 29779884 -159499670 - L2 LINE L2 -6 3307 2933 250 304 70 47 chr6 29779927 29780098 -159499456 - MIR SINE MIR -76 186 12 267 204 0 19 chr6 29780345 29780399 -159499155 + MIR SINE MIR 67 119 -89 815 226 70 5 chr6 29780943 29781129 -159498425 - MIR SINE MIR 0 262 65 1721 181 68 64 chr6 29781176 29781661 -159497893 - L1MC5 LINE L1 -842 7119 6633 1755 234 97 28 chr6 29781755 29782220 -159497334 - MLT1E LTR MaLR 0 593 97 390 136 11 23 chr6 29782584 29782672 -159496882 + CT-rich Low_complexity Low_complexity 4 90 0 243 88 0 0 chr6 29782672 29782706 -159496848 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2178 127 7 0 chr6 29782721 29783029 -159496525 - AluSx SINE Alu -2 310 1 2278 91 0 0 chr6 29783872 29784157 -159495397 - AluSc SINE Alu -24 285 1 2387 85 0 0 chr6 29784535 29784828 -159494726 - AluSc SINE Alu -16 293 1 243 0 0 0 chr6 29785806 29785833 -159493721 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 282 0 0 chr6 29786130 29786208 -159493346 - MLT1E LTR MaLR -515 78 1 506 279 74 67 chr6 29786315 29786630 -159492924 - L1ME LINE L1 -599 5571 5255 262 203 31 0 chr6 29786636 29786700 -159492854 + (TA)n Simple_repeat Simple_repeat 1 66 0 264 68 0 0 chr6 29789178 29789266 -159490288 - Alu SINE Alu 0 343 256 207 0 0 0 chr6 29789434 29789457 -159490097 + (CAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr6 29790067 29790090 -159489464 + (A)n Simple_repeat Simple_repeat 1 23 0 243 0 0 0 chr6 29790405 29790432 -159489122 + (CA)n Simple_repeat Simple_repeat 2 28 0 14409 183 34 7 chr6 29790645 29797113 -159482441 + L1PB1 LINE L1 1 6861 -6 281 231 179 0 chr6 29797998 29798076 -159481478 + MIR SINE MIR 63 154 -108 361 223 78 78 chr6 29798232 29798398 -159481156 - MLT1J LTR MaLR -4 507 342 2199 103 10 0 chr6 29800071 29800361 -159479193 + AluSc SINE Alu 1 293 -16 2397 105 0 0 chr6 29802901 29803206 -159476348 - AluSg SINE Alu -5 305 1 1263 130 97 5 chr6 29804318 29804534 -159475020 - MER46A DNA MER2_type 0 236 1 261 0 0 0 chr6 29805081 29805110 -159474444 + (A)n Simple_repeat Simple_repeat 1 29 0 1427 161 96 0 chr6 29805310 29805559 -159473995 + AluJo SINE Alu 37 309 -3 589 254 32 53 chr6 29806210 29806399 -159473155 + MER20B DNA MER1_type 27 211 -572 14507 117 35 24 chr6 29807091 29809482 -159470072 - Tigger1 DNA MER2_type -1 2417 1 940 227 10 76 chr6 29809538 29809686 -159469868 - MLT1C LTR MaLR 0 467 346 2379 91 7 0 chr6 29809686 29809993 -159469561 + AluSc SINE Alu 1 309 0 940 227 10 76 chr6 29809993 29810135 -159469419 - MLT1C LTR MaLR -121 346 196 9024 193 29 24 chr6 29810233 29812531 -159467023 - L1 LINE L1 -1490 6075 3469 1732 179 3 3 chr6 29812531 29812832 -159466722 + AluJb SINE Alu 1 301 -11 9024 193 29 24 chr6 29812832 29813140 -159466414 - L1 LINE L1 -4096 3469 3164 692 182 0 0 chr6 29813197 29813307 -159466247 - AluJb SINE Alu -200 112 3 2150 219 38 0 chr6 29813312 29813893 -159465661 - L1 LINE L1 -4390 3175 2573 2083 99 19 22 chr6 29813905 29814218 -159465336 - AluSq SINE Alu -1 312 1 828 135 0 23 chr6 29814220 29814353 -159465201 - AluJo/FLAM SINE Alu -172 130 1 824 188 56 47 chr6 29814404 29814638 -159464916 + MSTB2 LTR MaLR 222 457 0 428 200 22 0 chr6 29814638 29814728 -159464826 - MLT1C LTR MaLR -375 92 1 472 210 139 46 chr6 29814894 29815132 -159464422 + MER20B DNA MER1_type 518 777 -6 198 219 24 0 chr6 29816566 29816607 -159462947 - MIR SINE MIR -155 107 66 979 120 86 14 chr6 29816932 29817141 -159462413 + L1MA9 LINE L1 6009 6232 -80 319 230 14 0 chr6 29817410 29817484 -159462070 - L2 LINE L2 -19 3294 3220 2389 196 87 12 chr6 29817529 29818106 -159461448 + L1MC4 LINE L1 7218 7850 -192 1638 132 0 53 chr6 29818106 29818387 -159461167 + AluJo SINE Alu 1 266 -46 2389 196 87 12 chr6 29818387 29818456 -159461098 + L1MC4 LINE L1 7850 7912 -130 356 211 53 11 chr6 29818554 29818649 -159460905 + L1MC4 LINE L1 7943 8041 -1 554 255 150 39 chr6 29819560 29819824 -159459730 + MLT1H LTR MaLR 35 327 -222 300 255 148 27 chr6 29819850 29819999 -159459555 + MLT1H LTR MaLR 379 545 -4 278 327 122 11 chr6 29820022 29820285 -159459269 + L2 LINE L2 2150 2441 -873 187 354 162 10 chr6 29820590 29820689 -159458865 - L2 LINE L2 -6 3266 3153 180 329 0 85 chr6 29821566 29821648 -159457906 - L2 LINE L2 -81 3191 3117 242 224 17 17 chr6 29821779 29821837 -159457717 + L2 LINE L2 3256 3313 0 440 251 193 20 chr6 29821861 29822156 -159457398 - L1MC4a LINE L1 -1892 5916 5571 3053 116 53 2 chr6 29822319 29822837 -159456717 - L1MC1 LINE L1 -559 5774 5231 3135 117 48 27 chr6 29822837 29822890 -159456664 + L1MC1 LINE L1 5776 5826 -507 2035 148 0 6 chr6 29822890 29823201 -159456353 + AluSx SINE Alu 1 309 -3 3135 117 48 27 chr6 29823201 29823301 -159456253 + L1MC1 LINE L1 5826 5923 -410 1766 133 78 35 chr6 29823301 29823500 -159456054 - MER46B DNA MER2_type -2495 236 139 2213 117 0 0 chr6 29823500 29823791 -159455763 - AluSx SINE Alu -21 291 1 1766 133 78 35 chr6 29823791 29823937 -159455617 - MER46B DNA MER2_type -2592 139 1 3135 117 48 27 chr6 29823937 29824329 -159455225 + L1MC1 LINE L1 5923 6333 0 621 298 27 13 chr6 29824348 29824647 -159454907 + L1ME LINE L1 5458 5760 -361 242 276 132 0 chr6 29825004 29825080 -159454474 - L2 LINE L2 -5 3267 3182 292 159 48 0 chr6 29825576 29825639 -159453915 - MER103 DNA DNA -76 90 25 268 333 62 23 chr6 29827131 29827260 -159452294 + MIR3 SINE MIR 32 165 -43 321 324 82 46 chr6 29827293 29827512 -159452042 + L2 LINE L2 3043 3269 -3 1754 149 4 11 chr6 29828178 29828447 -159451107 - AluJo SINE Alu -23 289 23 251 268 201 6 chr6 29828674 29828853 -159450701 - L2 LINE L2 -2 3311 3098 1623 186 7 10 chr6 29828907 29829214 -159450340 + AluJo SINE Alu 1 306 -6 2205 121 0 3 chr6 29829360 29829666 -159449888 - AluSg1 SINE Alu -4 305 1 614 155 31 0 chr6 29829687 29829784 -159449770 - FRAM SINE Alu -47 129 30 539 213 0 29 chr6 29829891 29830027 -159449527 + L1ME1 LINE L1 6030 6161 -5 300 171 102 0 chr6 29831205 29831293 -159448261 + L1MC4 LINE L1 7095 7191 -851 1091 165 263 4 chr6 29831297 29831579 -159447975 + AluJo SINE Alu 1 343 0 615 210 133 0 chr6 29831803 29831984 -159447570 + MIR SINE MIR 3 207 -55 281 318 132 31 chr6 29832028 29832286 -159447268 - L2 LINE L2 -1328 1986 1703 * 393 278 106 13 chr6 29832280 29832431 -159447123 + L2 LINE L2 2196 2360 -954 1501 85 0 5 chr6 29832782 29832971 -159446583 + AluSg/x SINE Alu 102 289 -23 1803 195 12 80 chr6 29833007 29833520 -159446034 + MLT2B1 LTR ERVL 1 478 -42 361 258 37 6 chr6 29833571 29833734 -159445820 + (TA)n Simple_repeat Simple_repeat 2 169 0 2151 131 0 0 chr6 29833797 29834095 -159445459 - AluSx SINE Alu -14 298 1 315 350 182 21 chr6 29834194 29834523 -159445031 + L2 LINE L2 2418 2799 -515 274 333 0 24 chr6 29834552 29834678 -159444876 + L2 LINE L2 2897 3019 -253 516 269 19 13 chr6 29834686 29834842 -159444712 - MIR SINE MIR -28 234 78 1401 241 82 48 chr6 29834878 29835497 -159444057 + L2 LINE L2 2439 3075 -238 245 29 29 0 chr6 29835938 29835972 -159443582 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 4006 129 19 3 chr6 29836397 29837031 -159442523 + L1PA15 LINE L1 5522 6165 0 372 309 39 62 chr6 29838078 29838334 -159441220 + L1MC/D LINE L1 3826 4075 -2071 408 225 91 57 chr6 29839328 29839537 -159440017 + L1MC/D LINE L1 5296 5511 -2297 293 301 66 22 chr6 29940679 29940815 -159338739 + MIR SINE MIR 58 199 -63 300 308 92 34 chr6 29941461 29941935 -159337619 - L1MC/D LINE L1 -515 5727 5255 1570 139 68 4 chr6 29943834 29944100 -159335454 - AluJb SINE Alu -1 311 29 838 278 90 34 chr6 29945493 29945849 -159333705 - L2 LINE L2 0 3313 2938 488 227 133 0 chr6 29945861 29946011 -159333543 - L2 LINE L2 -1206 2108 1939 640 234 15 0 chr6 29946481 29946618 -159332936 + MIR SINE MIR 102 240 -22 522 302 90 19 chr6 29946709 29947086 -159332468 + L1MC/D LINE L1 4645 5048 -1098 567 261 105 4 chr6 29947215 29947453 -159332101 + L1MC/D LINE L1 5254 5515 -2293 232 243 27 40 chr6 29947453 29947527 -159332027 - MER76 LTR ERV -3 685 613 781 51 0 0 chr6 29947527 29947625 -159331929 + L1P LINE L1 1 98 -6048 * 4962 75 178 10 chr6 29947592 29948390 -159331164 + L1P LINE L1 578 1509 -4637 * 13292 23 0 2 chr6 29948385 29949920 -159329634 - L1P LINE L1 -802 5344 3813 925 340 66 42 chr6 29950222 29951197 -159328357 - ERVL LTR ERVL -1290 4195 3195 345 261 50 1 chr6 29951234 29951329 -159328225 - ERVL LTR ERVL -1901 3095 3010 297 312 9 46 chr6 29951329 29951438 -159328116 - LTR16A LTR ERVL -143 307 203 797 320 53 14 chr6 29951738 29952127 -159327427 + MLT1H LTR MaLR 1 442 -107 1498 296 90 12 chr6 29952203 29952927 -159326627 + L1M4 LINE L1 3600 4379 -1767 821 118 0 0 chr6 29953495 29953605 -159325949 + AluSg/x SINE Alu 185 294 -16 7392 174 25 73 chr6 29953617 29954685 -159324869 - L1MC4a LINE L1 -195 7613 6664 213 39 0 0 chr6 29954685 29954711 -159324843 + (TG)n Simple_repeat Simple_repeat 1 26 0 7392 174 25 73 chr6 29954711 29955440 -159324114 - L1MC4a LINE L1 -1144 6664 5902 2126 136 0 25 chr6 29955462 29955778 -159323776 + AluSx SINE Alu 5 312 0 1896 112 59 24 chr6 29955778 29956065 -159323489 - THE1B LTR MaLR -67 297 1 13135 84 1 0 chr6 29956065 29957644 -159321910 - THE1B-int LTR MaLR 0 1580 1 2435 101 72 20 chr6 29957644 29957990 -159321564 - THE1B LTR MaLR 0 364 1 219 319 43 0 chr6 29958121 29958190 -159321364 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 29959814 29959845 -159319709 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 29960622 29960659 -159318895 + (TG)n Simple_repeat Simple_repeat 1 37 0 242 355 133 15 chr6 29962802 29963005 -159316549 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 29963006 29963044 -159316510 + AT_rich Low_complexity Low_complexity 1 38 0 1979 127 0 48 chr6 29964400 29964714 -159314840 - AluSx SINE Alu -11 301 3 1675 164 25 7 chr6 29966203 29966478 -159313076 + AluJo SINE Alu 1 280 -32 603 116 27 0 chr6 29966478 29966590 -159312964 + GA-rich Low_complexity Low_complexity 4 118 0 243 0 0 0 chr6 29967896 29967923 -159311631 + (A)n Simple_repeat Simple_repeat 1 27 0 2117 99 31 17 chr6 29968056 29968348 -159311206 - AluSx SINE Alu -16 296 1 243 322 51 99 chr6 29969119 29969411 -159310143 - L2 LINE L2 -1 3271 2994 258 217 0 0 chr6 29969822 29969868 -159309686 + tRNA-Ser-AGC tRNA tRNA 33 78 -7 690 27 0 0 chr6 29970323 29970397 -159309157 - tRNA-Gln-CAA tRNA tRNA -1 74 1 506 272 70 6 chr6 29970483 29970641 -159308913 + MER20B DNA MER1_type 5 172 -611 232 211 77 0 chr6 29970783 29970835 -159308719 - L2 LINE L2 -511 2803 2748 1431 235 95 28 chr6 29970835 29971226 -159308328 + MLT1G LTR MaLR 172 588 -2 4269 71 15 121 chr6 29971259 29971377 -159308177 + MER4A LTR ERV1 2 131 -533 477 0 0 0 chr6 29971377 29971430 -159308124 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 4269 71 15 121 chr6 29971430 29971446 -159308108 + MER4A LTR ERV1 131 147 -517 885 97 8 15 chr6 29971446 29971580 -159307974 + FLAM_C SINE Alu 1 133 0 4269 71 15 121 chr6 29971580 29972186 -159307368 + MER4A LTR ERV1 147 664 0 672 294 162 20 chr6 29972736 29973138 -159306416 + L2 LINE L2 2843 3301 -12 2149 114 0 0 chr6 29973307 29973608 -159305946 - AluSx SINE Alu 0 301 1 259 367 23 8 chr6 29973624 29973752 -159305802 - MIR SINE MIR -65 197 68 205 51 51 0 chr6 29973811 29973850 -159305704 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2207 98 16 13 chr6 29974216 29974522 -159305032 + AluSx SINE Alu 1 307 -5 2377 82 0 13 chr6 29974616 29974921 -159304633 + AluSx SINE Alu 1 301 -11 5511 74 25 3 chr6 29974970 29975646 -159303908 + LTR8 LTR ERV1 1 691 0 2150 96 7 0 chr6 29976057 29976376 -159303178 + AluSx SINE Alu 1 321 0 862 224 83 98 chr6 29976489 29976887 -159302667 + MSTD LTR MaLR 1 392 -4 2201 95 0 26 chr6 29977326 29977631 -159301923 - AluSx SINE Alu -15 297 1 2230 80 13 10 chr6 29977636 29977935 -159301619 - AluSp SINE Alu -13 300 1 306 0 0 0 chr6 29977963 29977997 -159301557 + (CA)n Simple_repeat Simple_repeat 1 34 0 1630 234 25 0 chr6 29978121 29978446 -159301108 - MLT1A1 LTR MaLR -2 363 31 2305 89 13 0 chr6 29978707 29979010 -159300544 + AluSq SINE Alu 1 307 -6 261 280 0 40 chr6 29979828 29979903 -159299651 - L1MC/D LINE L1 -1907 5901 5830 768 253 15 81 chr6 29979907 29979991 -159299563 + MIR SINE MIR 4 92 -170 2225 155 117 15 chr6 29979991 29980392 -159299162 - MER65A LTR ERV1 -3 442 1 768 253 15 81 chr6 29980392 29980568 -159298986 + MIR SINE MIR 92 247 -15 644 250 159 17 chr6 29980607 29980839 -159298715 - L1MC/D LINE L1 -2023 5785 5521 1947 138 0 0 chr6 29981077 29981367 -159298187 - AluJb SINE Alu -18 294 5 532 207 165 0 chr6 29984001 29984277 -159295277 + MER33 DNA MER1_type 1 362 -1 282 304 216 6 chr6 29985723 29985894 -159293660 + L2 LINE L2 3107 3313 0 26 50 0 0 chr6 29986406 29986446 -159293108 + AT_rich Low_complexity Low_complexity 1 40 0 1704 116 0 8 chr6 29986923 29987165 -159292389 + AluSg/x SINE Alu 68 307 -3 2081 135 10 0 chr6 29987299 29987603 -159291951 + AluJo SINE Alu 1 307 -5 6003 64 21 64 chr6 29988440 29989870 -159289684 - SVA Other Other -519 867 8 287 141 16 0 chr6 29989976 29990040 -159289514 + (TA)n Simple_repeat Simple_repeat 2 66 0 1687 170 31 7 chr6 29990040 29990329 -159289225 - AluSx SINE Alu -16 296 1 361 214 16 87 chr6 29990466 29990592 -159288962 + MIR SINE MIR 77 193 -69 554 119 24 0 chr6 29990593 29990677 -159288877 + BC200 scRNA scRNA 5 90 -110 183 216 98 0 chr6 29990697 29990748 -159288806 + MIR SINE MIR 185 240 -22 236 28 56 0 chr6 29990831 29990867 -159288687 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1666 163 4 4 chr6 29990872 29991142 -159288412 - AluSx SINE Alu -42 270 1 198 212 76 45 chr6 29991642 29991708 -159287846 + MER5B DNA MER1_type 74 141 -37 693 200 103 0 chr6 29992135 29992300 -159287254 + AluJo SINE Alu 2 183 -129 28 29 0 0 chr6 29993534 29993569 -159285985 + AT_rich Low_complexity Low_complexity 1 35 0 2103 109 3 3 chr6 29993808 29994101 -159285453 - AluSc SINE Alu -14 295 3 24 32 0 0 chr6 29994185 29994216 -159285338 + AT_rich Low_complexity Low_complexity 1 31 0 2333 86 0 13 chr6 29994233 29994547 -159285007 - AluSg SINE Alu 0 310 1 513 221 130 84 chr6 29994801 29995100 -159284454 + LTR29 LTR ERV1 1 313 -309 2007 121 7 3 chr6 29995100 29995390 -159284164 + AluSq SINE Alu 6 296 -17 827 169 0 68 chr6 29995390 29995567 -159283987 + AluSg/x SINE Alu 132 296 -14 792 226 60 24 chr6 29995572 29995824 -159283730 + LTR48B LTR ERV1 348 608 -36 576 124 26 170 chr6 29995876 29996029 -159283525 + FLAM_A SINE Alu 1 131 -2 22 35 0 0 chr6 29996203 29996232 -159283322 + AT_rich Low_complexity Low_complexity 1 29 0 599 137 21 0 chr6 29996246 29996341 -159283213 + LTR29 LTR ERV1 1 97 -525 683 143 118 18 chr6 29996387 29996661 -159282893 + LTR49 LTR ERV1 227 566 -29 22 35 0 0 chr6 29997156 29997185 -159282369 + AT_rich Low_complexity Low_complexity 1 29 0 330 294 39 10 chr6 29997838 29997940 -159281614 + L2 LINE L2 3200 3304 -9 1217 157 96 9 chr6 29998165 29998394 -159281160 - AluJo SINE Alu -27 285 37 3145 153 74 38 chr6 29998403 29999035 -159280519 - MER51D LTR ERV1 -2 655 1 2056 109 14 3 chr6 30000583 30000876 -159278678 + AluSq SINE Alu 13 308 -5 765 172 0 0 chr6 30001993 30002162 -159277392 + FLAM_C SINE Alu 2 170 0 2242 112 0 3 chr6 30002409 30002713 -159276841 - AluSg SINE Alu -7 303 1 249 102 51 17 chr6 30003398 30003457 -159276097 + (TATG)n Simple_repeat Simple_repeat 2 62 0 384 111 0 0 chr6 30004288 30004351 -159275203 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 0 0 0 chr6 30004435 30004455 -159275099 + (T)n Simple_repeat Simple_repeat 1 20 0 209 33 33 0 chr6 30004672 30004702 -159274852 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 2251 115 0 0 chr6 30005035 30005330 -159274224 + AluSx SINE Alu 3 297 -15 1670 263 111 27 chr6 30005812 30006477 -159273077 - MER20B DNA MER1_type 0 783 63 2566 71 3 0 chr6 30007974 30008282 -159271272 + AluY SINE Alu 2 310 -1 555 294 129 26 chr6 30008417 30008832 -159270722 + L2 LINE L2 2565 3031 -282 220 156 44 0 chr6 30009560 30009605 -159269949 + L2 LINE L2 3267 3313 0 221 300 0 14 chr6 30009609 30009679 -159269875 + CT-rich Low_complexity Low_complexity 1 69 0 369 0 0 0 chr6 30009681 30009722 -159269832 + (CA)n Simple_repeat Simple_repeat 2 42 0 196 296 0 28 chr6 30009781 30009852 -159269702 + MIR3 SINE MIR 113 181 -27 806 206 6 12 chr6 30010103 30010268 -159269286 + FRAM SINE Alu 1 163 -13 2315 95 7 0 chr6 30010461 30010755 -159268799 + AluSp SINE Alu 1 296 -17 353 234 122 0 chr6 30013368 30013475 -159266079 + Charlie1 DNA MER1_type 8 127 -2634 1119 125 144 12 chr6 30013486 30013742 -159265812 + Charlie1 DNA MER1_type 2410 2699 -62 339 186 0 0 chr6 30013925 30013984 -159265570 + Charlie1 DNA MER1_type 2703 2761 0 753 210 63 77 chr6 30014543 30014797 -159264757 + LTR48B LTR ERV1 229 534 -110 2325 71 0 3 chr6 30014797 30015091 -159264463 - AluY SINE Alu -18 293 1 753 210 63 77 chr6 30015091 30015201 -159264353 + LTR48B LTR ERV1 534 644 0 21 0 0 0 chr6 30015534 30015555 -159263999 + AT_rich Low_complexity Low_complexity 1 21 0 2268 92 3 0 chr6 30016322 30016630 -159262924 + AluSx SINE Alu 1 309 0 233 313 52 35 chr6 30016739 30016854 -159262700 - MIR SINE MIR -85 177 61 829 125 20 120 chr6 30017726 30017819 -159261735 + MLT1B LTR MaLR 1 102 -288 2643 50 0 0 chr6 30017819 30018118 -159261436 - AluY SINE Alu -5 306 8 829 125 20 120 chr6 30018118 30018193 -159261361 + MLT1B LTR MaLR 102 149 -241 2894 19 0 0 chr6 30018193 30018509 -159261045 - AluYb8 SINE Alu -2 316 1 829 125 20 120 chr6 30018509 30018539 -159261015 + MLT1B LTR MaLR 149 180 -210 458 202 0 0 chr6 30018540 30018624 -159260930 + AluJ/FLAM SINE Alu 2 85 -227 936 154 34 69 chr6 30018657 30018973 -159260581 + MLT1B LTR MaLR 169 390 0 225 301 177 0 chr6 30019014 30019127 -159260427 + MIR SINE MIR 118 250 -12 894 257 39 63 chr6 30019826 30020238 -159259316 - MER113 DNA MER1_type? 0 521 120 1091 216 125 0 chr6 30020394 30020681 -159258873 - MER2 DNA MER2_type -4 341 19 1123 204 151 48 chr6 30020893 30021285 -159258269 - MLT1F LTR MaLR -66 476 45 2090 109 3 7 chr6 30021386 30021707 -159257847 + AluSp SINE Alu 1 320 0 768 284 69 68 chr6 30022312 30022817 -159256737 + L2 LINE L2 2776 3304 -9 2079 127 0 10 chr6 30023676 30023983 -159255571 - AluSx SINE Alu -1 311 8 1873 137 3 16 chr6 30025817 30026132 -159253422 + AluSx SINE Alu 1 311 -1 1957 139 10 7 chr6 30026135 30026445 -159253109 + AluSx SINE Alu 2 312 0 1387 182 76 4 chr6 30027402 30027677 -159251877 + AluJb SINE Alu 1 295 -17 488 230 71 0 chr6 30030273 30030386 -159249168 + MER58 DNA MER1_type 2 122 -93 1640 200 0 7 chr6 30030390 30030680 -159248874 + AluJb SINE Alu 1 288 -24 271 211 0 35 chr6 30030706 30030763 -159248791 + MER58 DNA MER1_type 2342 2396 -24 293 315 9 19 chr6 30031051 30031159 -159248395 - MIR SINE MIR -123 139 33 624 118 0 0 chr6 30031375 30031460 -159248094 - MER30B DNA MER1_type -5 185 101 301 42 21 21 chr6 30031462 30031472 -159248082 + (TTCC)n Simple_repeat Simple_repeat 3 12 -38 1855 87 116 29 chr6 30031472 30031748 -159247806 - AluSg SINE Alu -6 304 5 301 42 21 21 chr6 30031748 30031785 -159247769 + (TTCC)n Simple_repeat Simple_repeat 11 50 0 699 113 19 0 chr6 30031785 30031891 -159247663 - MER30B DNA MER1_type -78 112 5 418 253 173 19 chr6 30032450 30032612 -159246942 - L1PB4 LINE L1 -23 6133 5947 1733 90 16 12 chr6 30032632 30032888 -159246666 - AluSc SINE Alu -16 293 37 427 243 111 22 chr6 30034164 30034345 -159245209 - MER58A DNA MER1_type -1 223 27 230 26 263 0 chr6 30034851 30034889 -159244665 + LTR10B LTR ERV1 210 257 -290 1868 107 13 47 chr6 30035725 30036023 -159243531 + AluSg SINE Alu 1 288 -22 2106 92 6 78 chr6 30036300 30036635 -159242919 - AluSq SINE Alu -2 311 1 1017 83 0 0 chr6 30036637 30036769 -159242785 - AluY SINE Alu -178 133 2 328 109 0 0 chr6 30036879 30036934 -159242620 - AluJb SINE Alu 0 302 248 1127 196 0 25 chr6 30036934 30037138 -159242416 - AluJb SINE Alu -113 199 1 2868 13 0 3 chr6 30037244 30037556 -159241998 + AluYa5 SINE Alu 1 311 0 1560 173 4 4 chr6 30037711 30037977 -159241577 + AluSx SINE Alu 47 312 0 22 56 0 0 chr6 30038042 30038078 -159241476 + AT_rich Low_complexity Low_complexity 1 36 0 2334 73 0 17 chr6 30038103 30038405 -159241149 + AluSc SINE Alu 1 297 -12 645 135 19 0 chr6 30038588 30038692 -159240862 - LTR8 LTR ERV1 -23 668 563 336 158 0 40 chr6 30038693 30038769 -159240785 - LTR30 LTR ERV1 -98 624 552 3430 111 60 0 chr6 30041441 30041809 -159237745 - LTR8 LTR ERV1 -157 534 127 2005 104 0 0 chr6 30041809 30042078 -159237476 - AluSg SINE Alu -17 293 25 3430 111 60 0 chr6 30042078 30042213 -159237341 - LTR8 LTR ERV1 -564 127 1 278 98 20 0 chr6 30042422 30042473 -159237081 + (CA)n Simple_repeat Simple_repeat 1 52 0 1990 118 30 7 chr6 30042722 30043026 -159236528 - AluSx SINE Alu -1 311 1 817 219 6 0 chr6 30043077 30043241 -159236313 + FRAM SINE Alu 1 165 -1 1454 116 132 0 chr6 30043313 30043611 -159235943 - AluSp SINE Alu 0 331 1 1852 106 58 4 chr6 30043677 30043951 -159235603 - AluSx SINE Alu -23 289 1 267 128 64 0 chr6 30044024 30044071 -159235483 - LTR24C LTR ERV1 -2 633 584 736 95 0 95 chr6 30044073 30044130 -159235424 + FLAM_C SINE Alu 2 63 -249 4064 87 30 0 chr6 30044130 30044668 -159234886 + MER41A LTR ERV1 1 554 0 736 95 0 95 chr6 30044668 30044747 -159234807 + FLAM_C SINE Alu 63 125 -187 1748 149 159 25 chr6 30044756 30045158 -159234396 - LTR24C LTR ERV1 -36 599 144 * 2700 155 16 79 chr6 30045126 30045237 -159234317 - LTR29 LTR ERV1 -50 572 456 2534 66 0 3 chr6 30045237 30045540 -159234014 - AluY SINE Alu -9 302 1 2747 45 0 0 chr6 30045548 30045859 -159233695 - AluY SINE Alu 0 311 1 2700 155 16 79 chr6 30045859 30046094 -159233460 - LTR29 LTR ERV1 -173 449 268 2538 69 0 3 chr6 30046094 30046400 -159233154 - AluSp SINE Alu -8 305 1 2700 155 16 79 chr6 30046400 30046651 -159232903 - LTR29 LTR ERV1 -354 268 3 1597 126 55 11 chr6 30046651 30046910 -159232644 - LTR24B LTR ERV1 -286 290 17 1991 110 45 3 chr6 30046910 30047202 -159232352 - AluSc SINE Alu -5 304 1 1597 126 55 11 chr6 30047202 30047213 -159232341 - LTR24B LTR ERV1 -559 17 8 561 170 40 0 chr6 30047563 30047663 -159231891 + MLT1A1 LTR MaLR 1 104 -261 * 937 231 50 36 chr6 30047660 30047963 -159231591 + LTR48B LTR ERV1 338 644 0 599 121 0 0 chr6 30048103 30048186 -159231368 - AluSg/x SINE Alu -14 295 213 1772 136 0 11 chr6 30048187 30048451 -159231103 - AluSx SINE Alu -51 261 1 2372 71 30 3 chr6 30048544 30048841 -159230713 + AluY SINE Alu 1 305 -6 32 0 0 0 chr6 30049036 30049068 -159230486 + AT_rich Low_complexity Low_complexity 1 32 0 344 181 51 77 chr6 30049231 30049379 -159230175 - LTR48 LTR ERV1 -16 740 508 3073 159 20 4 chr6 30049380 30049884 -159229670 - MER41E LTR ERV1 0 512 1 816 252 86 82 chr6 30049984 30050413 -159229141 - LTR49 LTR ERV1 -160 435 5 229 121 0 0 chr6 30050384 30050417 -159229137 - MER34B LTR ERV1 -532 33 1 * 212 350 10 29 chr6 30050458 30050561 -159228993 - MIR SINE MIR -6 256 156 1387 162 128 25 chr6 30050564 30050753 -159228801 + LTR49 LTR ERV1 1 169 -453 1486 190 35 10 chr6 30050753 30051043 -159228511 - AluJo SINE Alu -11 301 5 1387 162 128 25 chr6 30051043 30051335 -159228219 + LTR49 LTR ERV1 169 609 -13 2103 100 23 10 chr6 30052312 30052613 -159226941 - AluSx SINE Alu -7 305 1 1093 161 92 65 chr6 30053279 30053435 -159226119 - AluJo SINE Alu -2 300 131 2039 81 53 3 chr6 30053435 30053720 -159225834 - AluSc SINE Alu -10 299 1 1093 161 92 65 chr6 30053720 30053855 -159225699 - AluJo SINE Alu -171 131 1 2018 134 7 3 chr6 30055505 30055810 -159223744 - AluSg1 SINE Alu -3 306 1 485 172 86 66 chr6 30057398 30057516 -159222038 - MLT1B LTR MaLR -236 154 31 1688 124 113 15 chr6 30057516 30057790 -159221764 - AluSg SINE Alu -9 301 1 485 172 86 66 chr6 30057790 30057822 -159221732 - MLT1B LTR MaLR -359 31 1 494 287 24 0 chr6 30058013 30058177 -159221377 - Charlie8 DNA MER1_type -1955 462 295 407 100 17 0 chr6 30058875 30058935 -159220619 - U7 snRNA snRNA -1 62 2 22 0 0 0 chr6 30058935 30058957 -159220597 + AT_rich Low_complexity Low_complexity 1 22 0 3502 115 28 48 chr6 30058992 30059671 -159219883 + MER39B LTR ERV1 1 643 -10 1599 172 52 3 chr6 30059694 30059985 -159219569 - AluJb SINE Alu -7 305 1 325 311 0 0 chr6 30060006 30060096 -159219458 + MER34 LTR ERV1 1 90 -452 260 228 44 95 chr6 30060093 30060251 -159219303 + LTR48 LTR ERV1 160 309 -478 * 1967 186 37 16 chr6 30060866 30061051 -159218503 - MER65A LTR ERV1 0 445 265 4405 102 62 57 chr6 30061051 30061826 -159217728 + MER4E LTR ERV1 1 779 0 1967 186 37 16 chr6 30061826 30062076 -159217478 - MER65A LTR ERV1 -180 265 1 1543 115 9 5 chr6 30062430 30062648 -159216906 + AluSg/x SINE Alu 74 292 -20 336 328 61 40 chr6 30062968 30063166 -159216388 - L2 LINE L2 -10 3303 3102 1243 175 45 84 chr6 30063203 30063512 -159216042 + AluJo SINE Alu 1 297 -15 37 0 0 0 chr6 30063512 30063549 -159216005 + AT_rich Low_complexity Low_complexity 1 37 0 650 0 0 0 chr6 30063862 30063934 -159215620 - tRNA-Met-i tRNA tRNA -3 72 1 637 0 0 0 chr6 30064277 30064348 -159215206 - tRNA-Gly-GGC tRNA tRNA -3 71 1 216 189 0 0 chr6 30064756 30064793 -159214761 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 207 0 0 0 chr6 30064794 30064817 -159214737 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2103 104 3 10 chr6 30064820 30065109 -159214445 - AluSx SINE Alu -24 288 2 388 202 21 0 chr6 30065112 30065206 -159214348 - L1MEc LINE L1 -4027 2369 2274 810 240 124 103 chr6 30065753 30066237 -159213317 + MLT1D LTR MaLR 12 505 0 209 237 0 0 chr6 30066378 30066416 -159213138 - L3 LINE CR1 -23 1554 1517 501 343 60 29 chr6 30066770 30067117 -159212437 - L3 LINE CR1 -159 1418 1061 216 372 67 16 chr6 30067257 30067569 -159211985 - L3 LINE CR1 -820 757 430 5441 118 26 10 chr6 30067572 30067895 -159211659 + L1PA16 LINE L1 4124 4440 -1726 2150 66 3 78 chr6 30067895 30068215 -159211339 + AluY SINE Alu 1 296 -15 5441 118 26 10 chr6 30068215 30069919 -159209635 + L1PA16 LINE L1 4440 6166 0 2152 124 0 7 chr6 30069938 30070237 -159209317 + AluSx SINE Alu 1 297 -15 896 195 11 26 chr6 30070707 30070897 -159208657 + MER5A DNA MER1_type 1 187 -2 2332 90 3 3 chr6 30071293 30071594 -159207960 - AluSx SINE Alu -11 301 1 297 0 0 0 chr6 30071942 30071975 -159207579 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 98 0 0 chr6 30072391 30072432 -159207122 + (TG)n Simple_repeat Simple_repeat 2 42 0 2339 82 13 0 chr6 30073929 30074235 -159205319 - AluSp SINE Alu -3 310 1 1809 201 53 54 chr6 30074711 30075068 -159204486 - MER44D DNA MER2_type -1882 605 193 1285 98 53 114 chr6 30075068 30075313 -159204241 - MER30 DNA MER1_type 0 230 1 1809 201 53 54 chr6 30075313 30075506 -159204048 - MER44D DNA MER2_type -2294 193 1 28 61 0 0 chr6 30076265 30076314 -159203240 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr6 30076663 30076685 -159202869 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 30077707 30077745 -159201809 + AT_rich Low_complexity Low_complexity 1 38 0 821 21 0 0 chr6 30077745 30077842 -159201712 - L1PA4 LINE L1 -3 6152 6056 440 37 0 0 chr6 30077842 30077896 -159201658 + L1PA5 LINE L1 6066 6119 -35 351 297 18 18 chr6 30077982 30078093 -159201461 + MIR SINE MIR 42 152 -56 30 0 0 0 chr6 30079296 30079326 -159200228 + AT_rich Low_complexity Low_complexity 1 30 0 2270 95 10 3 chr6 30079355 30079650 -159199904 - AluSg SINE Alu -13 297 1 240 305 39 18 chr6 30080339 30080571 -159198983 + L1M1 LINE L1 5497 5735 -568 21 0 0 0 chr6 30080744 30080765 -159198789 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr6 30080910 30080943 -159198611 + GA-rich Low_complexity Low_complexity 3 35 0 228 35 0 0 chr6 30081131 30081160 -159198394 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1914 132 0 21 chr6 30081173 30081453 -159198101 - AluSx SINE Alu -38 274 1 282 336 39 0 chr6 30081661 30081789 -159197765 - MIR SINE MIR -26 236 104 186 176 0 0 chr6 30081834 30081885 -159197669 + T-rich Low_complexity Low_complexity 1 51 0 2762 260 94 17 chr6 30082312 30083581 -159195973 - L1MC4 LINE L1 -145 7897 6441 2110 218 61 17 chr6 30083684 30084436 -159195118 - L1ME2 LINE L1 -228 5936 5147 1215 243 92 32 chr6 30084527 30084930 -159194624 - MER69 DNA AcHobo -2099 427 1 22 0 0 0 chr6 30085073 30085095 -159194459 + AT_rich Low_complexity Low_complexity 1 22 0 901 146 70 49 chr6 30085193 30085378 -159194176 - BC200 scRNA scRNA -7 193 5 323 293 120 0 chr6 30085961 30086111 -159193443 + ERVL LTR ERVL 2323 2490 -3274 269 224 60 0 chr6 30086111 30086178 -159193376 + MER76 LTR ERV 595 665 -23 * 512 227 21 14 chr6 30086165 30086306 -159193248 + MLT1D LTR MaLR 362 503 -2 257 352 44 32 chr6 30086349 30086599 -159192955 + ERVL LTR ERVL 3007 3259 -2226 200 35 35 0 chr6 30086703 30086732 -159192822 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 223 214 18 0 chr6 30086763 30086819 -159192735 + (TA)n Simple_repeat Simple_repeat 1 57 0 7277 172 36 66 chr6 30086872 30087031 -159192523 - L1MC4a LINE L1 0 7808 7646 2036 133 0 7 chr6 30087031 30087331 -159192223 + AluSx SINE Alu 1 298 -14 7277 172 36 66 chr6 30087331 30088409 -159191145 - L1MC4a LINE L1 -162 7646 6646 213 39 0 0 chr6 30088409 30088435 -159191119 + (TG)n Simple_repeat Simple_repeat 1 26 0 7277 172 36 66 chr6 30088435 30089146 -159190408 - L1MC4a LINE L1 -1162 6646 5916 2148 136 0 25 chr6 30089186 30089502 -159190052 + AluSx SINE Alu 5 312 0 1767 112 59 24 chr6 30089502 30089789 -159189765 - THE1B LTR MaLR -67 297 1 12350 84 1 0 chr6 30089789 30091368 -159188186 - THE1B-int LTR MaLR 0 1580 1 2286 98 72 20 chr6 30091368 30091714 -159187840 - THE1B LTR MaLR 0 364 1 224 319 43 0 chr6 30091845 30091914 -159187640 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 30093538 30093569 -159185985 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 30094346 30094383 -159185171 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 355 133 15 chr6 30096526 30096729 -159182825 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 30096730 30096768 -159182786 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr6 30098227 30098267 -159181287 + AT_rich Low_complexity Low_complexity 1 40 0 1707 116 0 8 chr6 30098744 30098986 -159180568 + AluSg/x SINE Alu 68 307 -3 2087 135 10 0 chr6 30099120 30099424 -159180130 + AluJo SINE Alu 1 307 -5 741 92 18 0 chr6 30100263 30100372 -159179182 + AluSq/x SINE Alu 1 111 -202 186 43 0 0 chr6 30100415 30100438 -159179116 + (A)n Simple_repeat Simple_repeat 1 23 0 1924 140 7 0 chr6 30101837 30102145 -159177409 - AluSx SINE Alu -2 310 1 565 247 35 29 chr6 30102146 30102316 -159177238 - MER4D LTR ERV1 -26 877 707 2009 92 7 20 chr6 30102320 30102612 -159176942 + AluSx SINE Alu 3 290 -22 2251 189 93 42 chr6 30103045 30103658 -159175896 - LTR48B LTR ERV1 0 644 1 1877 146 7 0 chr6 30103749 30104044 -159175510 + AluSx SINE Alu 1 297 -15 1734 152 3 14 chr6 30104093 30104383 -159175171 - AluJb SINE Alu -25 287 1 198 0 0 0 chr6 30104813 30104835 -159174719 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2019 122 0 10 chr6 30104835 30105123 -159174431 - AluSx SINE Alu -27 285 1 2421 73 0 0 chr6 30105578 30105881 -159173673 - AluY SINE Alu -8 303 1 2666 174 40 29 chr6 30105943 30106493 -159173061 + MER34B LTR ERV1 10 565 0 1935 103 48 3 chr6 30106722 30107012 -159172542 + AluSg SINE Alu 1 303 -7 23 97 0 0 chr6 30107186 30107258 -159172296 + AT_rich Low_complexity Low_complexity 1 72 0 1381 247 65 53 chr6 30107745 30108235 -159171319 - MER21B LTR ERV1 -123 740 245 2705 113 75 0 chr6 30108235 30108659 -159170895 - MER39B LTR ERV1 0 653 198 1970 151 0 0 chr6 30108668 30108980 -159170574 - AluSx SINE Alu 0 312 1 360 274 128 22 chr6 30109100 30109279 -159170275 + L1ME LINE L1 5465 5662 -459 28 0 0 0 chr6 30109855 30109883 -159169671 + AT_rich Low_complexity Low_complexity 1 28 0 653 191 7 22 chr6 30109933 30110069 -159169485 - AluJo SINE Alu -176 136 3 1615 102 45 4 chr6 30111058 30111302 -159168252 - AluSc SINE Alu -22 287 34 1399 188 238 0 chr6 30111370 30111791 -159167763 - L1MA9 LINE L1 -55 6257 5737 234 0 0 0 chr6 30112069 30112095 -159167459 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4510 128 40 19 chr6 30112095 30112875 -159166679 - LTR5 LTR ERVK -172 797 2 5761 69 21 72 chr6 30112876 30114764 -159164790 - SVA Other Other -519 936 8 339 265 69 29 chr6 30114836 30114938 -159164616 + L1MCa LINE L1 1959 2064 -4362 1552 172 32 7 chr6 30114938 30115223 -159164331 - AluSx SINE Alu -20 292 1 383 214 16 87 chr6 30115360 30115486 -159164068 + MIR SINE MIR 77 193 -69 531 119 24 0 chr6 30115487 30115571 -159163983 + BC200 scRNA scRNA 5 90 -110 188 216 98 0 chr6 30115591 30115642 -159163912 + MIR SINE MIR 185 240 -22 219 36 0 0 chr6 30115725 30115753 -159163801 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1578 163 4 4 chr6 30115758 30116028 -159163526 - AluSx SINE Alu -42 270 1 206 227 91 61 chr6 30116528 30116594 -159162960 + MER5B DNA MER1_type 74 141 -37 634 200 103 0 chr6 30117021 30117186 -159162368 + AluJo SINE Alu 2 183 -129 28 29 0 0 chr6 30118420 30118455 -159161099 + AT_rich Low_complexity Low_complexity 1 35 0 2001 106 3 3 chr6 30118694 30118986 -159160568 - AluSc SINE Alu -15 294 3 2193 87 0 13 chr6 30119118 30119428 -159160126 - AluSg SINE Alu -4 306 1 517 231 130 84 chr6 30119682 30119981 -159159573 + LTR29 LTR ERV1 1 313 -309 1905 121 7 3 chr6 30119981 30120271 -159159283 + AluSq SINE Alu 6 296 -17 849 169 0 68 chr6 30120271 30120448 -159159106 + AluSg/x SINE Alu 132 296 -14 780 226 60 24 chr6 30120453 30120705 -159158849 + LTR48B LTR ERV1 348 608 -36 552 94 13 188 chr6 30120774 30120923 -159158631 + FLAM_A SINE Alu 20 142 0 22 35 0 0 chr6 30121084 30121113 -159158441 + AT_rich Low_complexity Low_complexity 1 29 0 614 137 21 0 chr6 30121127 30121222 -159158332 + LTR29 LTR ERV1 1 97 -525 677 143 118 18 chr6 30121268 30121542 -159158012 + LTR49 LTR ERV1 227 566 -29 22 35 0 0 chr6 30122037 30122066 -159157488 + AT_rich Low_complexity Low_complexity 1 29 0 2051 95 7 7 chr6 30122664 30122958 -159156596 - AluSx SINE Alu -18 294 1 501 143 0 0 chr6 30123108 30123185 -159156369 - tRNA-Ser-TCA tRNA tRNA -1 84 8 1163 234 185 38 chr6 30123456 30123750 -159155804 + L2 LINE L2 968 1218 -2096 1926 92 7 33 chr6 30123750 30124054 -159155500 + AluSx SINE Alu 1 296 -16 1163 234 185 38 chr6 30124054 30124203 -159155351 + L2 LINE L2 1218 1476 -1838 461 243 140 0 chr6 30124229 30124365 -159155189 + L2 LINE L2 1884 2038 -1276 3522 177 30 8 chr6 30124366 30125151 -159154403 - L1MC1 LINE L1 -445 5888 5081 841 214 38 0 chr6 30125151 30125310 -159154244 + FRAM SINE Alu 1 162 -14 2211 80 0 10 chr6 30125795 30126095 -159153459 - AluSg SINE Alu -13 297 1 937 210 35 75 chr6 30126335 30126682 -159152872 - L1MC1 LINE L1 -1052 5094 4762 216 292 28 0 chr6 30126683 30126755 -159152799 + L2 LINE L2 2066 2139 -1175 2040 123 7 0 chr6 30126755 30127056 -159152498 - AluSx SINE Alu -9 303 1 510 276 104 31 chr6 30127056 30127219 -159152335 + L2 LINE L2 3130 3304 -9 290 325 73 8 chr6 30127246 30127369 -159152185 - MIR3 SINE MIR -63 145 15 2018 115 23 13 chr6 30127525 30127830 -159151724 - AluSx SINE Alu -3 309 2 2097 110 0 3 chr6 30128190 30128481 -159151073 - AluSg SINE Alu -20 290 1 231 262 95 0 chr6 30128492 30128576 -159150978 + LTR66 LTR ERVL 26 117 -493 295 335 71 12 chr6 30128820 30128990 -159150564 + MIR SINE MIR 6 185 -77 315 347 136 27 chr6 30129023 30129317 -159150237 - L2 LINE L2 -56 3257 2932 1998 117 0 0 chr6 30129507 30129798 -159149756 - AluSq SINE Alu -22 291 1 806 76 144 0 chr6 30129798 30129916 -159149638 - AluSq/x SINE Alu -178 135 1 1619 124 40 44 chr6 30129983 30130281 -159149273 + AluSq SINE Alu 1 297 -16 366 87 0 0 chr6 30131287 30131333 -159148221 + tRNA-Val-GTT tRNA tRNA 1 46 -30 645 27 0 0 chr6 30131766 30131839 -159147715 - tRNA-Val-GTT tRNA tRNA -3 73 1 2198 85 0 16 chr6 30132098 30132416 -159147138 + AluSp SINE Alu 1 313 0 196 333 0 0 chr6 30132430 30132490 -159147064 - L2 LINE L2 -219 3053 2994 192 40 0 0 chr6 30132509 30132534 -159147020 + (T)n Simple_repeat Simple_repeat 1 25 0 617 103 0 0 chr6 30132979 30133066 -159146488 + AluSq/x SINE Alu 37 123 -190 394 187 0 13 chr6 30133370 30133445 -159146109 + tRNA-Val-GTG tRNA tRNA 2 75 -1 2090 106 7 0 chr6 30133551 30133854 -159145700 + AluSx SINE Alu 2 306 -6 393 22 0 0 chr6 30133954 30134000 -159145554 + (CA)n Simple_repeat Simple_repeat 1 46 0 2021 65 65 4 chr6 30134409 30134685 -159144869 + AluSp SINE Alu 1 293 -20 1928 119 7 0 chr6 30134756 30135058 -159144496 - AluSx SINE Alu -8 304 1 686 0 0 0 chr6 30135355 30135429 -159144125 - tRNA-Thr-ACT tRNA tRNA -3 74 1 2254 79 3 19 chr6 30135634 30135952 -159143602 + AluSq SINE Alu 1 313 0 312 28 0 0 chr6 30136224 30136260 -159143294 + U2 snRNA snRNA 1 36 -152 1003 282 41 40 chr6 30136294 30136695 -159142859 + LTR16A LTR ERVL 51 457 0 2002 97 19 13 chr6 30136898 30137208 -159142346 + AluSx SINE Alu 1 312 0 2464 58 0 0 chr6 30137211 30137520 -159142034 + AluY SINE Alu 1 309 -2 655 14 0 0 chr6 30138848 30138922 -159140632 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 25 65 0 0 chr6 30139462 30139508 -159140046 + AT_rich Low_complexity Low_complexity 1 46 0 237 256 88 44 chr6 30139548 30139587 -159139967 - L1MC4a LINE L1 -1692 6116 6080 2270 99 0 0 chr6 30139587 30139899 -159139655 - AluSx SINE Alu 0 312 1 237 256 88 44 chr6 30139899 30140109 -159139445 - L1MC4a LINE L1 -1728 6080 5856 1842 90 4 4 chr6 30140159 30140415 -159139139 + AluSc SINE Alu 38 293 -16 279 133 0 0 chr6 30140782 30140827 -159138727 + (TG)n Simple_repeat Simple_repeat 2 46 0 406 159 29 0 chr6 30140854 30140923 -159138631 - AluSg/x SINE Alu -13 289 219 1991 119 173 31 chr6 30140935 30141105 -159138449 + LTR47A LTR ERVL 11 155 -297 1796 142 27 0 chr6 30141105 30141400 -159138154 + AluSx SINE Alu 1 303 -9 1991 119 173 31 chr6 30141400 30141616 -159137938 + LTR47A LTR ERVL 155 452 0 690 282 136 22 chr6 30141693 30142062 -159137492 + HAL1 LINE L1 1496 1906 -601 21 0 0 0 chr6 30142517 30142538 -159137016 + AT_rich Low_complexity Low_complexity 1 21 0 2044 129 0 0 chr6 30142881 30143190 -159136364 - AluSx SINE Alu 0 312 4 2183 75 7 29 chr6 30143438 30143745 -159135809 + AluSg SINE Alu 3 302 -8 2283 90 0 3 chr6 30143827 30144139 -159135415 - AluSp SINE Alu -2 311 1 2237 84 3 3 chr6 30144148 30144456 -159135098 - AluSg SINE Alu -2 308 1 219 314 0 0 chr6 30145451 30145502 -159134052 + MER5B DNA MER1_type 128 178 0 1636 134 42 0 chr6 30145875 30146136 -159133418 - AluSx SINE Alu -24 288 17 490 304 48 39 chr6 30146206 30146436 -159133118 - MIR SINE MIR -10 252 21 2240 98 0 7 chr6 30146440 30146747 -159132807 - AluSx SINE Alu -7 305 1 192 301 96 0 chr6 30147262 30147335 -159132219 - L2 LINE L2 -287 3026 2947 2214 90 0 7 chr6 30147511 30147812 -159131742 + AluSg SINE Alu 9 307 -3 2230 47 3 72 chr6 30147833 30148153 -159131401 + AluY SINE Alu 2 299 -12 2064 117 0 0 chr6 30148297 30148595 -159130959 - AluSx SINE Alu -14 298 1 402 222 94 71 chr6 30148636 30148848 -159130706 - L1MC4a LINE L1 -1925 5883 5667 217 217 0 28 chr6 30148850 30148956 -159130598 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 1395 182 20 40 chr6 30149102 30149244 -159130310 + AluJb SINE Alu 1 144 -168 2276 77 0 3 chr6 30149244 30149543 -159130011 + AluSg SINE Alu 1 298 -12 1395 182 20 40 chr6 30149543 30149702 -159129852 + AluJb SINE Alu 144 296 -16 992 187 14 10 chr6 30149782 30149991 -159129563 + AluJo SINE Alu 85 294 -18 1581 114 0 0 chr6 30150585 30150805 -159128749 - AluSg/x SINE Alu -10 302 83 1257 166 58 75 chr6 30150888 30151196 -159128358 + AluJo SINE Alu 1 303 -9 3058 146 18 24 chr6 30151303 30151343 -159128211 - L1MB3 LINE L1 -7 6176 6137 186 71 0 0 chr6 30151343 30151371 -159128183 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1837 87 60 11 chr6 30151371 30151636 -159127918 - AluSc SINE Alu -31 278 1 3058 146 18 24 chr6 30151636 30152118 -159127436 - L1MB3 LINE L1 -45 6138 5660 2658 46 3 0 chr6 30152118 30152423 -159127131 - AluY SINE Alu -5 306 1 3058 146 18 24 chr6 30152423 30152807 -159126747 - L1MB3 LINE L1 -523 5660 5275 478 147 147 116 chr6 30153139 30153223 -159126331 + MER3 DNA MER1_type 1 92 -70 1992 139 3 10 chr6 30153223 30153524 -159126030 + AluJb SINE Alu 1 299 -13 478 147 147 116 chr6 30153524 30153568 -159125986 + MER3 DNA MER1_type 92 133 -76 258 380 62 8 chr6 30153610 30153739 -159125815 - L2 LINE L2 -573 2741 2606 374 223 172 87 chr6 30153801 30154133 -159125421 - MLT1J LTR MaLR -4 507 148 1867 157 143 51 chr6 30154315 30154743 -159124811 - MLT1C LTR MaLR 0 467 1 1961 139 0 37 chr6 30155258 30155581 -159123973 - AluJb SINE Alu -1 311 1 1673 181 0 0 chr6 30156217 30156493 -159123061 + AluJo SINE Alu 37 312 0 2570 47 0 0 chr6 30156540 30156839 -159122715 + AluY SINE Alu 1 299 -12 400 259 136 32 chr6 30157427 30157678 -159121876 + MLT1J LTR MaLR 232 508 -3 560 220 63 73 chr6 30157679 30157783 -159121771 - MIR SINE MIR -1 261 158 1168 169 16 6 chr6 30157783 30157966 -159121588 + MER5A DNA MER1_type 5 189 0 560 220 63 73 chr6 30157966 30158052 -159121502 - MIR SINE MIR -104 158 73 1304 160 82 25 chr6 30158095 30158367 -159121187 - Charlie2 DNA MER1_type 0 2862 2568 2242 136 0 0 chr6 30158367 30158676 -159120878 - AluSx SINE Alu -3 309 1 1304 160 82 25 chr6 30158676 30158721 -159120833 - Charlie2 DNA MER1_type -294 2568 2527 2212 89 7 10 chr6 30158740 30159031 -159120523 - AluSc SINE Alu -19 290 1 240 185 0 0 chr6 30159076 30159130 -159120424 + CT-rich Low_complexity Low_complexity 4 57 0 1788 166 7 23 chr6 30159143 30159451 -159120103 - AluSx SINE Alu -6 306 4 841 227 92 12 chr6 30159452 30159703 -159119851 - Charlie2 DNA MER1_type -628 2234 1964 241 328 49 0 chr6 30159763 30159885 -159119669 + MER112 DNA MER1_type 6 133 -127 3450 98 40 23 chr6 30159933 30160231 -159119323 - Tigger3(Golem) DNA MER2_type -1 3027 2715 2111 122 7 3 chr6 30160231 30160526 -159119028 + AluSq SINE Alu 1 296 -17 3450 98 40 23 chr6 30160526 30160745 -159118809 - Tigger3(Golem) DNA MER2_type -313 2715 2501 1076 117 0 0 chr6 30160745 30160926 -159118628 - AluSg/x SINE Alu 0 316 136 200 283 0 0 chr6 30161143 30161189 -159118365 + L2 LINE L2 3266 3311 -2 2660 52 0 0 chr6 30162369 30162677 -159116877 + AluY SINE Alu 1 308 -3 225 0 0 0 chr6 30162809 30162834 -159116720 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1839 135 7 11 chr6 30162834 30163115 -159116439 - AluSx SINE Alu -32 280 1 1004 225 0 6 chr6 30163365 30163538 -159116016 - MER45A DNA AcHobo -3 175 4 1260 118 10 35 chr6 30164164 30164367 -159115187 + AluSg/x SINE Alu 115 312 0 1711 148 46 30 chr6 30164382 30164685 -159114869 + AluSx SINE Alu 1 308 -4 243 333 227 30 chr6 30164801 30164999 -159114555 - MIR SINE MIR -6 256 20 262 287 37 28 chr6 30165455 30165563 -159113991 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 1947 128 3 49 chr6 30165584 30165890 -159113664 + AluSx SINE Alu 1 292 -20 1697 191 17 7 chr6 30166455 30166754 -159112800 + AluJb SINE Alu 11 312 0 492 176 19 19 chr6 30166990 30167098 -159112456 + MLT2D LTR ERVL 1 108 -306 1897 159 0 7 chr6 30167122 30167411 -159112143 - AluJb SINE Alu -25 287 1 21 0 0 0 chr6 30167420 30167441 -159112113 + AT_rich Low_complexity Low_complexity 1 21 0 2316 103 3 0 chr6 30167441 30167742 -159111812 - AluSq SINE Alu -11 302 1 1724 171 20 3 chr6 30167747 30168040 -159111514 - AluJb SINE Alu -14 298 1 807 179 0 41 chr6 30168068 30168213 -159111341 + FLAM_C SINE Alu 2 140 -3 825 223 113 42 chr6 30168213 30168496 -159111058 + MLT2B1 LTR ERVL 126 428 -92 2274 85 3 10 chr6 30168556 30168849 -159110705 + AluSp SINE Alu 1 291 -22 706 93 0 0 chr6 30169155 30169241 -159110313 - AluSp/q SINE Alu -14 299 214 542 98 120 0 chr6 30169238 30169359 -159110195 + AluSg/x SINE Alu 182 313 0 * 282 242 16 0 chr6 30169548 30169610 -159109944 - tRNA-Ile-ATT tRNA tRNA -14 63 1 2201 124 75 29 chr6 30169674 30170022 -159109532 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr6 30170551 30170574 -159108980 + (TA)n Simple_repeat Simple_repeat 1 23 0 325 222 37 25 chr6 30170575 30170656 -159108898 - MIR SINE MIR -71 191 110 457 271 71 9 chr6 30171128 30171353 -159108201 + L1MC/D LINE L1 5266 5504 -2304 356 128 26 39 chr6 30171782 30171860 -159107694 - tRNA-Ser-AGC tRNA tRNA -6 79 3 273 262 40 56 chr6 30172538 30172664 -159106890 + MER5A DNA MER1_type 40 163 -26 2161 113 7 0 chr6 30173450 30173752 -159105802 + AluSx SINE Alu 1 304 -8 644 159 9 35 chr6 30173878 30173982 -159105572 + FLAM_A SINE Alu 22 124 -187 2429 62 3 3 chr6 30173982 30174286 -159105268 - AluSp SINE Alu -9 304 1 340 327 67 53 chr6 30174523 30175030 -159104524 + L1ME2 LINE L1 5387 5900 -264 445 244 24 16 chr6 30175101 30175224 -159104330 + L1MEc LINE L1 107 230 -6166 1719 138 34 28 chr6 30175492 30175783 -159103771 - AluSx SINE Alu -19 293 1 1096 202 39 0 chr6 30175784 30175992 -159103562 - MER58A DNA MER1_type -8 216 1 200 119 0 24 chr6 30176360 30176402 -159103152 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2487 54 0 3 chr6 30176522 30176818 -159102736 - AluY SINE Alu -16 295 1 25 0 0 0 chr6 30177309 30177334 -159102220 + AT_rich Low_complexity Low_complexity 1 25 0 700 27 0 0 chr6 30177354 30177429 -159102125 + tRNA-Thr-ACT tRNA tRNA 1 75 -2 636 207 167 7 chr6 30178202 30178352 -159101202 - MER45A DNA AcHobo -4 174 1 2114 83 54 0 chr6 30178504 30178780 -159100774 + AluSg SINE Alu 6 296 -14 628 82 0 0 chr6 30179208 30179281 -159100273 - tRNA-Val-GTG tRNA tRNA -3 73 1 6032 155 31 9 chr6 30179876 30181013 -159098541 - L1MC1 LINE L1 -1 6612 5453 5586 156 34 22 chr6 30180981 30181120 -159098434 - L1MC1 LINE L1 -5349 1077 941 * 1888 139 37 10 chr6 30181120 30181414 -159098140 - AluSx SINE Alu -10 302 1 5586 156 34 22 chr6 30181414 30182309 -159097245 - L1MC1 LINE L1 -5485 941 31 794 221 33 16 chr6 30182309 30182553 -159097001 - L1M4 LINE L1 -3118 3028 2781 1108 149 0 0 chr6 30182558 30182719 -159096835 - AluSg/x SINE Alu -17 295 135 1383 225 97 47 chr6 30182730 30183051 -159096503 - L1MD2 LINE L1 -8 6234 5931 2158 112 7 0 chr6 30183051 30183345 -159096209 - AluSx SINE Alu -16 296 1 1383 225 97 47 chr6 30183345 30183399 -159096155 - L1MD2 LINE L1 -311 5931 5881 2006 145 0 0 chr6 30183399 30183696 -159095858 + AluSx SINE Alu 1 297 -15 1383 225 97 47 chr6 30183696 30183924 -159095630 - L1MD2 LINE L1 -361 5881 5656 1856 179 0 3 chr6 30184154 30184187 -159095367 - AluSx SINE Alu 0 312 280 199 0 65 0 chr6 30184187 30184218 -159095336 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1856 179 0 3 chr6 30184218 30184497 -159095057 - AluSx SINE Alu -32 280 1 2297 105 0 0 chr6 30184530 30184825 -159094729 - AluSg SINE Alu -15 295 1 2618 49 0 0 chr6 30184899 30185204 -159094350 + AluY SINE Alu 1 305 -6 1588 165 91 15 chr6 30185205 30185545 -159094009 - L1MB4 LINE L1 -8 6172 5807 616 157 74 0 chr6 30185639 30185747 -159093807 - AluJ SINE Alu -7 305 190 907 162 0 0 chr6 30185750 30185892 -159093662 - AluJ SINE Alu -165 147 6 1630 199 10 103 chr6 30185897 30186029 -159093525 - L1 LINE L1 -1972 4174 4031 2128 91 14 14 chr6 30186029 30186325 -159093229 - AluSx SINE Alu -16 296 1 1630 199 10 103 chr6 30186325 30186631 -159092923 - L1 LINE L1 -2115 4031 3785 1990 143 7 3 chr6 30186631 30186932 -159092622 + AluSx SINE Alu 3 304 -8 1630 199 10 103 chr6 30186932 30186989 -159092565 - L1 LINE L1 -2361 3785 3724 601 241 44 16 chr6 30186981 30187230 -159092324 - L1 LINE L1 -2647 3499 3244 * 468 205 0 73 chr6 30189223 30189273 -159090281 - L1 LINE L1 -2837 3309 3257 2054 114 20 3 chr6 30189273 30189572 -159089982 - AluSx SINE Alu -8 304 1 468 205 0 73 chr6 30189572 30189672 -159089882 - L1 LINE L1 -2889 3257 3170 325 206 11 65 chr6 30189703 30189795 -159089759 + MLT2D LTR ERVL 287 373 -41 1033 165 141 20 chr6 30189933 30190182 -159089372 - AluJo SINE Alu -31 281 3 2397 71 7 3 chr6 30190215 30190525 -159089029 - AluSq SINE Alu -2 311 1 1045 99 12 43 chr6 30190561 30190793 -159088761 + AluSp SINE Alu 127 353 0 24 0 0 0 chr6 30191125 30191149 -159088405 + AT_rich Low_complexity Low_complexity 1 24 0 760 207 0 0 chr6 30191157 30191278 -159088276 - FLAM_A SINE Alu -12 121 1 25 0 0 0 chr6 30191386 30191411 -159088143 + AT_rich Low_complexity Low_complexity 1 25 0 2570 46 0 3 chr6 30191581 30191885 -159087669 + AluY SINE Alu 1 303 -8 1719 113 25 0 chr6 30191896 30192135 -159087419 + AluSx SINE Alu 1 245 -67 251 329 105 9 chr6 30192161 30192380 -159087174 - L1MB4 LINE L1 -2009 5799 5560 2198 105 3 9 chr6 30192527 30192842 -159086712 + AluSq SINE Alu 1 313 0 193 336 86 16 chr6 30193303 30193431 -159086123 + L2 LINE L2 2948 3084 -188 356 253 0 0 chr6 30194416 30194491 -159085063 + tRNA-Val-GTG tRNA tRNA 1 75 -1 226 23 47 47 chr6 30194731 30194774 -159084780 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1519 152 53 4 chr6 30194796 30195060 -159084494 - AluJb SINE Alu -35 277 1 311 220 127 17 chr6 30195216 30195334 -159084220 - L1MB4 LINE L1 -956 5190 5060 211 185 37 0 chr6 30195361 30195415 -159084139 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1718 105 4 0 chr6 30195417 30195655 -159083899 - AluSp SINE Alu -74 239 1 329 250 11 11 chr6 30195680 30195768 -159083786 + L1MB1 LINE L1 5319 5406 -758 340 194 0 0 chr6 30196571 30196638 -159082916 - L1MB1 LINE L1 -1 6167 6101 857 236 0 43 chr6 30196639 30196847 -159082707 + MER8 DNA MER2_type 4 202 -37 331 87 65 0 chr6 30196855 30196901 -159082653 + AluJo SINE Alu 87 135 -167 256 189 19 0 chr6 30196906 30196959 -159082595 + L1MB1 LINE L1 5725 5778 -390 2083 123 3 23 chr6 30196975 30197284 -159082270 + AluSq SINE Alu 11 313 0 288 145 145 0 chr6 30197284 30197346 -159082208 + L1MB1 LINE L1 5852 5922 -261 1346 134 71 36 chr6 30197399 30197524 -159082030 + L1MB1 LINE L1 5906 6025 -143 2446 132 28 3 chr6 30197524 30197879 -159081675 - THE1B LTR MaLR 0 364 1 1346 134 71 36 chr6 30197879 30197940 -159081614 + L1MB1 LINE L1 6025 6082 -86 1224 214 0 36 chr6 30197940 30198188 -159081366 - MER8 DNA MER2_type 0 239 1 1346 134 71 36 chr6 30198188 30198253 -159081301 + L1MB1 LINE L1 6082 6167 -1 422 183 127 0 chr6 30198361 30198432 -159081122 - AluSg SINE Alu -229 81 2 1971 135 14 7 chr6 30198444 30198818 -159080736 - AluSx SINE Alu 0 376 1 1662 170 129 34 chr6 30198818 30199047 -159080507 - L1M3 LINE L1 -434 5734 5528 185 62 0 31 chr6 30199047 30199079 -159080475 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1662 170 129 34 chr6 30199079 30199475 -159080079 - L1M3 LINE L1 -640 5528 5048 1761 143 0 4 chr6 30199475 30199747 -159079807 - AluJb SINE Alu -41 271 1 216 182 0 0 chr6 30199762 30199806 -159079748 + (CAA)n Simple_repeat Simple_repeat 2 45 0 274 202 29 48 chr6 30199806 30199910 -159079644 + L1 LINE L1 4734 4835 -1311 * 1950 201 93 8 chr6 30199899 30200371 -159079183 - L1M3 LINE L1 -1422 4724 4213 1081 158 44 35 chr6 30200368 30200596 -159078958 - L1M3 LINE L1 -2289 3857 3628 * 2310 96 3 0 chr6 30200599 30200901 -159078653 + AluSx SINE Alu 1 303 -9 290 198 70 23 chr6 30200901 30200981 -159078573 - L1M3 LINE L1 -3011 3135 3052 2216 86 4 0 chr6 30200984 30201299 -159078255 + AluSp SINE Alu 3 318 0 1085 154 35 0 chr6 30201299 30201468 -159078086 + AluSg/x SINE Alu 134 308 -4 707 217 31 6 chr6 30201471 30201632 -159077922 - L1M3 LINE L1 -3353 2793 2629 585 357 61 50 chr6 30202168 30202647 -159076907 + L2 LINE L2 2785 3269 -3 686 106 0 0 chr6 30202657 30202751 -159076803 + AluS SINE Alu 7 100 -213 313 106 47 129 chr6 30202751 30202836 -159076718 - LTR41 LTR ERVL -140 633 556 657 187 32 39 chr6 30203066 30203221 -159076333 - LTR41 LTR ERVL -615 158 5 2324 58 38 0 chr6 30203338 30203630 -159075924 + AluSq SINE Alu 1 303 -10 667 14 0 0 chr6 30204060 30204133 -159075421 - tRNA-Val-GTT tRNA tRNA -3 73 1 31 96 0 0 chr6 30204508 30204602 -159074952 + AT_rich Low_complexity Low_complexity 1 94 0 234 311 0 0 chr6 30205075 30205136 -159074418 - tRNA-Val-GTG tRNA tRNA -15 61 1 825 181 23 53 chr6 30206156 30206327 -159073227 + FAM SINE Alu 2 167 -8 24 32 0 0 chr6 30206340 30206371 -159073183 + AT_rich Low_complexity Low_complexity 1 31 0 763 114 14 71 chr6 30206371 30206511 -159073043 + FLAM_C SINE Alu 1 132 -1 363 328 30 40 chr6 30206751 30206952 -159072602 + MIR SINE MIR 24 222 -40 244 276 198 17 chr6 30207045 30207161 -159072393 - MIR SINE MIR -123 139 3 232 280 75 0 chr6 30207562 30207655 -159071899 - MER5A DNA MER1_type -57 132 33 1564 168 154 9 chr6 30207961 30208396 -159071158 + MER109 Unknown Unknown 1933 2430 -2 664 217 249 43 chr6 30208408 30208449 -159071105 - L1M4 LINE L1 -1845 4301 4270 213 65 0 0 chr6 30208449 30208480 -159071074 + (TG)n Simple_repeat Simple_repeat 2 32 0 664 217 249 43 chr6 30208480 30208517 -159071037 - L1M4 LINE L1 -1876 4270 4242 1582 129 36 79 chr6 30208517 30208820 -159070734 + AluJo SINE Alu 1 290 -22 664 217 249 43 chr6 30208820 30209021 -159070533 - L1M4 LINE L1 -1904 4242 3963 908 168 13 7 chr6 30209040 30209195 -159070359 - AluJb SINE Alu -13 299 144 506 163 0 0 chr6 30209374 30209454 -159070100 - AluJ/FLAM SINE Alu -231 81 2 486 210 0 50 chr6 30209510 30209629 -159069925 + LTR38B LTR ERV1 2 114 -496 264 259 78 128 chr6 30209740 30210137 -159069417 + LTR38B LTR ERV1 183 559 -51 2487 81 3 0 chr6 30210138 30210447 -159069107 - AluSg SINE Alu 0 310 1 296 215 154 0 chr6 30212188 30212253 -159067301 + tRNA-Val-GTG tRNA tRNA 1 75 -1 189 74 0 0 chr6 30212263 30212290 -159067264 + (TC)n Simple_repeat Simple_repeat 2 28 0 664 256 36 31 chr6 30212353 30212548 -159067006 - MLT1D LTR MaLR -48 457 262 2634 46 7 0 chr6 30212552 30212888 -159066666 - AluY SINE Alu 0 338 1 955 142 119 28 chr6 30214058 30214276 -159065278 - MER31B LTR ERV1 -1 465 228 423 0 0 0 chr6 30214284 30214331 -159065223 + (T)n Simple_repeat Simple_repeat 1 47 0 2366 70 3 0 chr6 30214350 30214636 -159064918 + AluSp SINE Alu 1 287 -26 363 136 0 0 chr6 30214654 30214713 -159064841 + (CA)n Simple_repeat Simple_repeat 2 60 0 632 213 97 63 chr6 30214727 30214934 -159064620 - MER31B LTR ERV1 -252 214 1 2479 169 31 5 chr6 30215587 30216000 -159063554 + MER70B LTR ERVL 155 578 0 1943 188 30 3 chr6 30216002 30216363 -159063191 + MER70B-int LTR ERVL 1 371 -4652 5268 230 57 35 chr6 30217630 30219253 -159060301 + MER70B-int LTR ERVL 787 3092 -2438 2402 187 10 5 chr6 30219346 30219764 -159059790 + MER70B-int LTR ERVL 3580 3999 -1024 2288 229 27 4 chr6 30219771 30220252 -159059302 + MER70B LTR ERVL 32 523 -55 2198 66 7 31 chr6 30220422 30220755 -159058799 + AluY SINE Alu 1 326 0 1032 104 15 0 chr6 30220771 30220906 -159058648 + AluSg SINE Alu 1 137 -173 484 35 0 0 chr6 30220906 30220964 -159058590 + AluY SINE Alu 238 295 -14 2398 172 37 80 chr6 30221106 30221750 -159057804 - LTR6A LTR ERV1 0 564 1 633 174 106 8 chr6 30221869 30222001 -159057553 - MLT1G1 LTR MaLR -3 592 448 266 293 13 0 chr6 30221995 30222070 -159057484 - MLT1B LTR MaLR -197 345 270 * 719 214 17 17 chr6 30222297 30222470 -159057084 + L1M4 LINE L1 2283 2455 -3691 758 145 0 99 chr6 30222472 30222624 -159056930 + MLT1B LTR MaLR 1 137 -253 626 164 90 8 chr6 30222652 30222786 -159056768 - MLT1B LTR MaLR -245 145 1 347 71 0 0 chr6 30222990 30223032 -159056522 - 5S rRNA rRNA -79 42 1 672 221 14 0 chr6 30223476 30223616 -159055938 - MER41E LTR ERV1 -355 157 16 1220 132 0 77 chr6 30224227 30224447 -159055107 + AluJo SINE Alu 100 302 -10 184 270 0 0 chr6 30224501 30224538 -159055016 + MIR SINE MIR 112 148 -114 2095 170 86 30 chr6 30224567 30225031 -159054523 + LTR2B LTR ERV1 1 490 0 8668 43 0 0 chr6 30225120 30226089 -159053465 - LTR5 LTR ERVK 0 969 1 1934 242 44 8 chr6 30226412 30226844 -159052710 + MER41E LTR ERV1 21 473 -39 180 0 0 0 chr6 30226844 30226864 -159052690 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1934 242 44 8 chr6 30226864 30226906 -159052648 + MER41E LTR ERV1 473 512 0 3443 114 15 34 chr6 30226944 30227477 -159052077 - MER1A DNA MER1_type -4 523 1 186 133 0 0 chr6 30227667 30227697 -159051857 + (A)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr6 30228466 30228492 -159051062 + (CAA)n Simple_repeat Simple_repeat 2 27 0 633 14 0 0 chr6 30228545 30228617 -159050937 + tRNA-Met-i tRNA tRNA 1 72 -3 24 0 0 0 chr6 30228699 30228723 -159050831 + AT_rich Low_complexity Low_complexity 1 24 0 228 35 0 0 chr6 30228723 30228752 -159050802 + (TC)n Simple_repeat Simple_repeat 2 30 0 459 310 180 8 chr6 30228865 30229120 -159050434 + Charlie2b DNA MER1_type 834 1132 -1650 236 222 25 37 chr6 30229426 30229507 -159050047 + L1MC4a LINE L1 5740 5819 -1989 817 250 93 7 chr6 30229509 30229789 -159049765 + L1MC4a LINE L1 5851 6154 -1654 312 143 0 0 chr6 30229808 30229864 -159049690 + MER51B-int LTR ERV1 2084 2139 -3078 * 1904 121 92 8 chr6 30229837 30230211 -159049343 + MER51B-int LTR ERV1 2340 5375 -2043 461 120 109 11 chr6 30230210 30230302 -159049252 + MER51B-int LTR ERV1 5249 5349 -2188 * 624 163 93 16 chr6 30230292 30230421 -159049133 + MER51B-int LTR ERV1 5620 5758 -1779 8177 125 33 1 chr6 30231819 30233134 -159046420 + MER51B-int LTR ERV1 5744 7147 -390 615 234 15 0 chr6 30233134 30233271 -159046283 + LTR54B LTR ERV1 3 141 -357 2478 127 3 0 chr6 30233271 30233617 -159045937 + MER51B-int LTR ERV1 7470 7816 0 2247 114 77 3 chr6 30233618 30233969 -159045585 + MER51B LTR ERV1 1 377 0 299 275 90 76 chr6 30234001 30234096 -159045458 + L1MC4a LINE L1 6055 6147 -1661 2176 133 0 0 chr6 30234096 30234398 -159045156 - AluSx SINE Alu -10 302 1 299 275 90 76 chr6 30234398 30234513 -159045041 + L1MC4a LINE L1 6147 6268 -1540 948 227 32 141 chr6 30234712 30234938 -159044616 + L1MC4 LINE L1 6418 6667 -1375 2015 123 17 3 chr6 30234938 30235231 -159044323 - AluSx SINE Alu -15 297 1 948 227 32 141 chr6 30235231 30235572 -159043982 + L1MC4 LINE L1 6667 6923 -1119 1928 97 0 19 chr6 30235576 30235845 -159043709 + AluSc SINE Alu 34 297 -12 860 171 80 0 chr6 30235889 30236065 -159043489 - LTR47A LTR ERVL -2 450 261 529 256 30 6 chr6 30236315 30236479 -159043075 + L1MC4 LINE L1 6958 7125 -917 188 292 21 52 chr6 30236857 30236953 -159042601 + L2 LINE L2 3210 3302 -11 216 0 0 0 chr6 30238068 30238092 -159041462 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2469 53 0 7 chr6 30238435 30238735 -159040819 - AluY SINE Alu -13 298 1 1923 138 34 0 chr6 30238846 30239144 -159040410 - AluSx SINE Alu -4 308 1 2380 72 0 0 chr6 30239191 30239481 -159040073 + AluSc SINE Alu 1 290 -19 206 318 24 0 chr6 30239866 30239951 -159039603 + GA-rich Low_complexity Low_complexity 2 88 0 1879 104 0 8 chr6 30240555 30240814 -159038740 - AluSc SINE Alu -52 257 1 685 285 64 37 chr6 30241263 30241828 -159037726 - Charlie2 DNA MER1_type -38 2824 2245 605 42 0 0 chr6 30242017 30242088 -159037466 - tRNA-Gln-CAA tRNA tRNA -4 71 1 310 322 34 0 chr6 30242281 30242399 -159037155 - MIR SINE MIR -20 242 121 21 0 0 0 chr6 30244098 30244119 -159035435 + AT_rich Low_complexity Low_complexity 1 21 0 2121 100 31 17 chr6 30244252 30244543 -159035011 - AluSx SINE Alu -17 295 1 259 217 0 0 chr6 30246017 30246063 -159033491 + tRNA-Ser-AGC tRNA tRNA 33 78 -7 659 27 0 0 chr6 30246519 30246593 -159032961 - tRNA-Gln-CAA tRNA tRNA -1 74 1 512 272 70 6 chr6 30246679 30246837 -159032717 + MER20B DNA MER1_type 5 172 -611 215 211 77 0 chr6 30246979 30247031 -159032523 - L2 LINE L2 -511 2803 2748 1435 235 95 28 chr6 30247031 30247422 -159032132 + MLT1G LTR MaLR 172 588 -2 4272 71 15 121 chr6 30247455 30247573 -159031981 + MER4A LTR ERV1 2 131 -533 702 0 0 0 chr6 30247573 30247651 -159031903 + (TTTTA)n Simple_repeat Simple_repeat 3 80 0 4272 71 15 121 chr6 30247651 30247667 -159031887 + MER4A LTR ERV1 131 147 -517 835 97 8 15 chr6 30247667 30247801 -159031753 + FLAM_C SINE Alu 1 133 0 4272 71 15 121 chr6 30247801 30248407 -159031147 + MER4A LTR ERV1 147 664 0 556 304 157 15 chr6 30248956 30249358 -159030196 + L2 LINE L2 2843 3301 -12 2175 114 0 0 chr6 30249527 30249832 -159029722 - AluSx SINE Alu 0 305 1 227 367 23 8 chr6 30249848 30249976 -159029578 - MIR SINE MIR -65 197 68 205 51 51 0 chr6 30250035 30250074 -159029480 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2211 101 16 13 chr6 30250440 30250747 -159028807 + AluSx SINE Alu 1 308 -4 2385 85 0 13 chr6 30250841 30251146 -159028408 + AluSx SINE Alu 1 301 -11 5222 75 25 3 chr6 30251195 30251871 -159027683 + LTR8 LTR ERV1 1 691 0 2176 96 7 0 chr6 30252282 30252605 -159026949 + AluSx SINE Alu 1 325 0 874 225 86 94 chr6 30252718 30253113 -159026441 + MSTD LTR MaLR 1 392 -4 2186 101 0 26 chr6 30253552 30253858 -159025696 - AluSx SINE Alu -14 298 1 2334 85 3 0 chr6 30253863 30254158 -159025396 - AluSp SINE Alu -17 296 1 396 0 0 0 chr6 30254186 30254230 -159025324 + (CA)n Simple_repeat Simple_repeat 1 44 0 1641 231 25 0 chr6 30254354 30254679 -159024875 - MLT1A1 LTR MaLR -2 363 31 2324 89 13 0 chr6 30254940 30255243 -159024311 + AluSq SINE Alu 1 307 -6 258 280 0 40 chr6 30256061 30256136 -159023418 - L1MC/D LINE L1 -1907 5901 5830 695 264 11 77 chr6 30256140 30256224 -159023330 + MIR SINE MIR 4 92 -170 2083 157 117 15 chr6 30256224 30256625 -159022929 - MER65A LTR ERV1 -3 442 1 695 264 11 77 chr6 30256625 30256801 -159022753 + MIR SINE MIR 92 247 -15 627 250 159 17 chr6 30256840 30257072 -159022482 - L1MC/D LINE L1 -2023 5785 5521 1977 135 0 0 chr6 30257310 30257598 -159021956 - AluJb SINE Alu -20 292 5 513 207 165 0 chr6 30260232 30260508 -159019046 + MER33 DNA MER1_type 1 362 -1 242 304 216 6 chr6 30261954 30262125 -159017429 + L2 LINE L2 3107 3313 0 2400 88 3 0 chr6 30262955 30263263 -159016291 + AluSp SINE Alu 1 309 -4 652 27 0 0 chr6 30263624 30263698 -159015856 + tRNA-Arg-CGC tRNA tRNA 1 74 -2 273 57 0 0 chr6 30264280 30264315 -159015239 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1977 115 30 20 chr6 30265115 30265420 -159014134 - AluSp SINE Alu -5 308 1 633 27 0 0 chr6 30265604 30265679 -159013875 - tRNA-Ile-ATT tRNA tRNA -2 75 1 310 172 0 17 chr6 30265985 30266043 -159013511 - MER66A LTR ERV1 -138 340 284 2282 74 13 7 chr6 30267657 30267956 -159011598 - AluSx SINE Alu -2 310 10 436 226 7 95 chr6 30268063 30268200 -159011354 - FLAM_A SINE Alu -17 125 1 261 0 0 0 chr6 30268239 30268268 -159011286 + (TG)n Simple_repeat Simple_repeat 2 30 0 2126 95 0 26 chr6 30268520 30268824 -159010730 + AluSq SINE Alu 1 296 -17 1057 84 0 0 chr6 30268876 30269007 -159010547 + AluSc SINE Alu 1 131 -178 737 118 0 0 chr6 30269007 30269117 -159010437 + AluSg/x SINE Alu 191 300 -9 515 105 0 40 chr6 30269420 30269496 -159010058 - tRNA-Phe-TTC tRNA tRNA -3 73 1 360 43 0 0 chr6 30269517 30269563 -159009991 + (T)n Simple_repeat Simple_repeat 1 46 0 2294 74 9 49 chr6 30269778 30270104 -159009450 - AluSp SINE Alu 0 313 1 2432 45 3 32 chr6 30270463 30270774 -159008780 - AluY SINE Alu -7 304 3 494 161 34 85 chr6 30270774 30270892 -159008662 + MER92C LTR ERV1 200 311 -243 529 167 0 12 chr6 30270892 30270976 -159008578 - MER68 LTR ERV1 0 562 480 241 146 18 18 chr6 30271040 30271095 -159008459 - L1MC1 LINE L1 -318 6295 6241 474 213 52 29 chr6 30271097 30271233 -159008321 + MER92C LTR ERV1 414 552 -2 2196 114 3 0 chr6 30271783 30272082 -159007472 - AluSx SINE Alu -12 300 1 234 91 0 0 chr6 30272085 30272118 -159007436 + (T)n Simple_repeat Simple_repeat 1 33 0 1532 164 63 35 chr6 30272158 30272483 -159007071 - AluJo SINE Alu 0 333 1 631 186 22 82 chr6 30272498 30272681 -159006873 - L1MC2 LINE L1 -13 6331 6160 2036 113 51 0 chr6 30272682 30272974 -159006580 + AluSg SINE Alu 1 307 -3 2284 84 17 0 chr6 30272988 30273307 -159006247 + AluSq SINE Alu 1 313 0 3634 156 8 3 chr6 30273307 30274000 -159005554 - L1MC1 LINE L1 -467 6146 5453 * 4780 153 65 14 chr6 30273968 30274548 -159005006 - L1MC1 LINE L1 -5349 1077 435 2372 93 0 6 chr6 30274548 30274861 -159004693 + AluSx SINE Alu 1 311 -1 4780 153 65 14 chr6 30274861 30275175 -159004379 - L1MC1 LINE L1 -5991 435 138 2666 48 0 3 chr6 30275249 30275559 -159003995 - AluY SINE Alu -2 309 1 1838 203 155 58 chr6 30275606 30275702 -159003852 - L1MD2 LINE L1 -13 6346 6261 2186 111 3 0 chr6 30275702 30276000 -159003554 - AluSx SINE Alu -2 310 12 1838 203 155 58 chr6 30276000 30276229 -159003325 - L1MD2 LINE L1 -98 6261 6056 1983 120 27 20 chr6 30276229 30276530 -159003024 - AluSx SINE Alu -9 303 1 1838 203 155 58 chr6 30276530 30276571 -159002983 - L1MD2 LINE L1 -303 6056 5382 282 334 46 30 chr6 30276571 30276876 -159002678 - L1MA7 LINE L1 -365 5926 5617 1853 144 0 72 chr6 30277004 30277338 -159002216 + AluSx SINE Alu 1 310 -2 1873 186 77 12 chr6 30277470 30277901 -159001653 - L1MB3 LINE L1 0 6183 5725 228 139 14 0 chr6 30277917 30277956 -159001598 - AluJo SINE Alu -22 280 239 598 221 7 14 chr6 30277956 30278096 -159001458 - AluJo SINE Alu -172 140 2 2903 175 21 62 chr6 30278097 30278163 -159001391 - L1MB3 LINE L1 -447 5733 5666 2492 57 0 31 chr6 30278163 30278481 -159001073 - AluY SINE Alu -3 308 1 2903 175 21 62 chr6 30278481 30279040 -159000514 - L1MB3 LINE L1 -514 5666 5181 2190 109 0 3 chr6 30279040 30279365 -159000189 - AluSx SINE Alu 0 312 1 2903 175 21 62 chr6 30279365 30279836 -158999718 - L1MB3 LINE L1 -999 5181 4692 9975 53 7 106 chr6 30279853 30281386 -158998168 - SVA Other Other 0 1386 5 2745 209 33 18 chr6 30281666 30282388 -158997166 - L1MB3 LINE L1 -2194 3952 3220 252 222 0 63 chr6 30282486 30282549 -158997005 + MLT2D LTR ERVL 291 349 -65 354 173 0 0 chr6 30282578 30282653 -158996901 + CT-rich Low_complexity Low_complexity 1 75 0 243 0 0 0 chr6 30282676 30282703 -158996851 + (CA)n Simple_repeat Simple_repeat 1 27 0 693 279 112 18 chr6 30282753 30283093 -158996461 - L1ME3A LINE L1 -156 6014 5643 603 68 0 0 chr6 30283261 30283334 -158996220 + tRNA-Val-GTT tRNA tRNA 1 73 -3 28 29 0 0 chr6 30283901 30283936 -158995618 + AT_rich Low_complexity Low_complexity 1 35 0 2079 118 10 14 chr6 30284061 30284358 -158995196 + AluSx SINE Alu 1 296 -16 1149 159 52 30 chr6 30284563 30284686 -158994868 + Tigger7 DNA MER2_type 2255 2387 -104 4769 95 4 38 chr6 30284686 30285101 -158994453 - MER4A LTR ERV1 0 664 280 2426 97 0 10 chr6 30285101 30285411 -158994143 - AluSx SINE Alu -5 307 1 4769 95 4 38 chr6 30285411 30285682 -158993872 - MER4A LTR ERV1 -384 280 1 1149 159 52 30 chr6 30285682 30285790 -158993764 + Tigger7 DNA MER2_type 2387 2491 0 3102 138 53 96 chr6 30286043 30286234 -158993320 - LTR8 LTR ERV1 0 691 493 2151 114 0 16 chr6 30286234 30286542 -158993012 + AluSq SINE Alu 2 304 -9 3102 138 53 96 chr6 30286542 30287072 -158992482 - LTR8 LTR ERV1 -198 493 1 2220 92 0 72 chr6 30287145 30287480 -158992074 + AluSx SINE Alu 1 311 -1 345 208 28 14 chr6 30287743 30287815 -158991739 + tRNA-Val-GTG tRNA tRNA 1 73 -3 1862 151 0 31 chr6 30288133 30288452 -158991102 - AluJb SINE Alu -2 310 2 1009 147 0 0 chr6 30288623 30288766 -158990788 + AluSg/x SINE Alu 145 287 -25 270 253 90 18 chr6 30288772 30288938 -158990616 - L1ME3A LINE L1 -969 5177 5000 * 361 211 16 11 chr6 30288921 30289020 -158990534 + L1M LINE L1 5312 5407 -764 4388 200 75 48 chr6 30289829 30289882 -158989672 - L1MB1 LINE L1 -4 6164 6114 2324 78 3 7 chr6 30289882 30290177 -158989377 - AluSp SINE Alu -19 294 1 4388 200 75 48 chr6 30290177 30290447 -158989107 - L1MB1 LINE L1 -54 6114 5853 1336 178 159 0 chr6 30290447 30290705 -158988849 - AluJo SINE Alu -3 299 1 4388 200 75 48 chr6 30290705 30290933 -158988621 - L1MB1 LINE L1 -315 5853 5633 2143 136 3 0 chr6 30290933 30291242 -158988312 - AluSx SINE Alu -2 310 1 4388 200 75 48 chr6 30291242 30291550 -158988004 - L1MB1 LINE L1 -535 5633 5335 2277 94 3 0 chr6 30291550 30291838 -158987716 - AluSp SINE Alu -24 289 1 4388 200 75 48 chr6 30291838 30292002 -158987552 - L1MB1 LINE L1 -833 5335 5177 1755 119 93 0 chr6 30292002 30292270 -158987284 + AluSp SINE Alu 21 313 0 4388 200 75 48 chr6 30292270 30293189 -158986365 - L1MB1 LINE L1 -991 5177 4162 661 233 0 0 chr6 30293339 30293468 -158986086 + FLAM_A SINE Alu 2 130 -3 203 245 0 71 chr6 30293836 30293934 -158985620 + A-rich Low_complexity Low_complexity 5 95 0 2432 59 14 0 chr6 30293989 30294277 -158985277 + AluY SINE Alu 1 292 -19 2159 107 0 38 chr6 30294727 30295046 -158984508 - AluSc SINE Alu 0 309 3 1501 171 18 145 chr6 30295062 30295161 -158984393 + LTR26E LTR ERV1 280 390 -232 747 180 0 0 chr6 30295161 30295283 -158984271 + FLAM_C SINE Alu 1 122 -11 1501 171 18 145 chr6 30295283 30295316 -158984238 + LTR26E LTR ERV1 390 426 -196 2152 117 0 35 chr6 30295316 30295633 -158983921 + AluSx SINE Alu 1 306 -6 1501 171 18 145 chr6 30295633 30295676 -158983878 + LTR26E LTR ERV1 426 473 -149 2170 126 0 22 chr6 30295676 30295994 -158983560 - AluSx SINE Alu -1 311 1 1501 171 18 145 chr6 30295994 30296209 -158983345 + LTR26E LTR ERV1 473 622 0 1667 150 64 4 chr6 30296315 30296582 -158982972 - AluJo SINE Alu -19 293 11 21 0 0 31 chr6 30296855 30296872 -158982682 + AT_rich Low_complexity Low_complexity 1 18 -13 2505 84 0 3 chr6 30296872 30297183 -158982371 + AluY SINE Alu 1 310 -1 21 0 0 31 chr6 30297183 30297197 -158982357 + AT_rich Low_complexity Low_complexity 18 31 0 1990 116 55 27 chr6 30297241 30297569 -158981985 - MER1B DNA MER1_type 0 337 1 299 29 0 0 chr6 30297914 30297948 -158981606 + MLT2A1 LTR ERVL 411 444 0 17969 64 14 19 chr6 30297948 30300230 -158979324 + HERVL-A1 LTR ERVL 1 2272 -3382 916 201 1 0 chr6 30300228 30300404 -158979150 + ERVL LTR ERVL 1498 1693 -3979 * 612 96 85 0 chr6 30300566 30300660 -158978894 + ERVL LTR ERVL 1693 1794 -3970 3430 70 14 0 chr6 30300671 30301099 -158978455 - LTR3b LTR ERVK -3 434 1 3952 148 19 0 chr6 30301099 30301681 -158977873 + ERVL LTR ERVL 1788 2380 -3384 1194 164 36 84 chr6 30301683 30301957 -158977597 + MLT2B2 LTR ERVL 255 515 0 1685 210 25 27 chr6 30304113 30304479 -158975075 + MLT1A1 LTR MaLR 1 365 0 354 296 57 68 chr6 30304773 30304855 -158974699 + LTR33 LTR ERVL 47 128 -393 2208 112 10 0 chr6 30304855 30305151 -158974403 - AluSg SINE Alu -11 299 1 354 296 57 68 chr6 30305151 30305244 -158974310 + LTR33 LTR ERVL 128 220 -301 482 285 32 72 chr6 30305278 30305499 -158974055 + LTR33 LTR ERVL 308 519 -2 2368 76 3 0 chr6 30305566 30305855 -158973699 + AluSp SINE Alu 11 300 -13 1526 159 24 54 chr6 30305904 30306200 -158973354 + AluJb SINE Alu 2 288 -24 31 0 0 0 chr6 30306427 30306458 -158973096 + AT_rich Low_complexity Low_complexity 1 31 0 2109 124 30 0 chr6 30306679 30306978 -158972576 - AluSx SINE Alu -4 308 1 2477 74 0 0 chr6 30307098 30307396 -158972158 - AluSg SINE Alu -12 298 1 1418 158 87 34 chr6 30307473 30307771 -158971783 + LTR48 LTR ERV1 1 314 -473 2206 128 0 3 chr6 30307772 30308085 -158971469 + AluSq SINE Alu 1 312 -1 4926 79 4 69 chr6 30308102 30308810 -158970744 + MER4A LTR ERV1 3 664 0 2608 198 42 12 chr6 30309201 30309241 -158970313 - MLT2B2 LTR ERVL -1 514 477 237 65 0 0 chr6 30309241 30309272 -158970282 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2608 198 42 12 chr6 30309272 30309730 -158969824 - MLT2B2 LTR ERVL -38 477 1 3184 144 89 76 chr6 30309854 30309992 -158969562 + MER50 LTR ERV1 1 136 -598 2320 60 0 14 chr6 30309992 30310311 -158969243 + AluY SINE Alu 1 315 0 3184 144 89 76 chr6 30310311 30310867 -158968687 + MER50 LTR ERV1 136 705 -29 489 284 93 6 chr6 30310964 30311126 -158968428 - LTR67 LTR ERVL -34 523 348 215 122 0 24 chr6 30311228 30311269 -158968285 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 1929 116 58 10 chr6 30311279 30311573 -158967981 - AluSx SINE Alu -4 308 1 244 369 87 0 chr6 30311573 30311670 -158967884 - LTR67 LTR ERVL -345 212 107 1845 159 7 3 chr6 30311693 30311988 -158967566 + AluJo SINE Alu 7 302 -10 995 246 57 93 chr6 30311994 30312552 -158967002 + MER34 LTR ERV1 1 538 -4 1722 174 3 0 chr6 30312929 30313240 -158966314 + AluSx SINE Alu 1 312 0 836 239 6 17 chr6 30313331 30313511 -158966043 - LTR8 LTR ERV1 0 691 514 794 189 40 0 chr6 30313513 30313661 -158965893 - LTR8A LTR ERV1 -573 154 1 2032 115 0 0 chr6 30313684 30313963 -158965591 + AluSq SINE Alu 23 301 -12 184 389 53 15 chr6 30314052 30314183 -158965371 - L2 LINE L2 -240 3032 2897 641 206 181 6 chr6 30314701 30314861 -158964693 - AluJo SINE Alu -5 307 120 304 309 64 0 chr6 30314870 30314980 -158964574 - L2 LINE L2 -5 3267 3151 257 308 13 0 chr6 30315041 30315119 -158964435 - MLT1K LTR MaLR -3 585 507 510 126 92 0 chr6 30315263 30315350 -158964204 - L1M3f LINE L1 -5227 101 7 1984 120 0 13 chr6 30315481 30315782 -158963772 + AluSx SINE Alu 1 297 -15 396 176 0 14 chr6 30315832 30315906 -158963648 - tRNA-Thr-ACA tRNA tRNA -3 73 1 25 31 0 0 chr6 30316615 30316647 -158962907 + AT_rich Low_complexity Low_complexity 1 32 0 201 181 14 28 chr6 30318140 30318212 -158961342 + (TA)n Simple_repeat Simple_repeat 1 71 0 385 234 95 36 chr6 30318351 30318488 -158961066 + L1ME4a LINE L1 5783 5927 -194 2093 112 11 11 chr6 30318790 30318917 -158960637 + AluSq SINE Alu 9 135 -178 2462 56 16 10 chr6 30318917 30319223 -158960331 + AluSc SINE Alu 1 308 -1 2093 112 11 11 chr6 30319223 30319382 -158960172 + AluSq SINE Alu 134 295 -18 2596 49 0 3 chr6 30319555 30319861 -158959693 - AluY SINE Alu -6 305 1 682 285 221 44 chr6 30319955 30320335 -158959219 - LTR33 LTR ERVL -51 470 6 2258 109 3 0 chr6 30320417 30320719 -158958835 - AluSx SINE Alu -9 303 1 24 53 0 0 chr6 30321098 30321136 -158958418 + AT_rich Low_complexity Low_complexity 1 38 0 2234 106 0 0 chr6 30321174 30321467 -158958087 + AluSc SINE Alu 1 293 -16 264 263 18 0 chr6 30321702 30321759 -158957795 - MER5C DNA MER1_type -262 62 5 1824 116 94 4 chr6 30322165 30322440 -158957114 + AluSq SINE Alu 6 305 -8 989 168 0 0 chr6 30322441 30322630 -158956924 + AluSg/x SINE Alu 132 320 0 610 257 0 0 chr6 30323419 30323559 -158955995 - MLT1-int LTR MaLR -835 536 397 1087 84 0 0 chr6 30323568 30323711 -158955843 - Alu SINE Alu -1 310 168 2023 157 0 0 chr6 30328546 30328846 -158950708 + AluJb SINE Alu 1 300 -12 466 326 7 0 chr6 30330097 30330235 -158949319 + MIR SINE MIR 124 262 0 180 111 0 0 chr6 30330437 30330464 -158949090 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5788 144 69 33 chr6 30330581 30331955 -158947599 + L1MA5 LINE L1 4904 6299 -1 638 281 63 30 chr6 30332132 30332431 -158947123 + L1MC4a LINE L1 5536 5844 -1964 1469 182 0 16 chr6 30332451 30332709 -158946845 + AluJo SINE Alu 1 254 -58 784 308 71 0 chr6 30332929 30333254 -158946300 + L1MEc LINE L1 34 381 -6015 383 271 21 0 chr6 30333270 30333366 -158946188 + MER63A DNA MER1_type 84 181 -29 595 284 95 34 chr6 30333693 30334020 -158945534 + MER68 LTR ERV1 216 562 0 5898 222 94 54 chr6 30334101 30334774 -158944780 + L1MEc LINE L1 49 694 -5702 2264 88 0 3 chr6 30334774 30335068 -158944486 - AluY SINE Alu -18 293 1 5898 222 94 54 chr6 30335068 30335153 -158944401 + L1MEc LINE L1 694 774 -5622 2268 101 0 7 chr6 30335153 30335450 -158944104 + AluSg SINE Alu 1 295 -15 5898 222 94 54 chr6 30335450 30335646 -158943908 + L1MEc LINE L1 774 961 -5435 1865 38 0 0 chr6 30335646 30335859 -158943695 + L1PA4 LINE L1 5943 6155 0 5898 222 94 54 chr6 30335859 30336526 -158943028 + L1MEc LINE L1 961 1600 -4796 968 206 65 42 chr6 30336526 30336740 -158942814 - MER20 DNA MER1_type 0 219 1 5898 222 94 54 chr6 30336740 30337305 -158942249 + L1MEc LINE L1 1600 2325 -4071 2483 66 0 3 chr6 30337305 30337608 -158941946 + AluY SINE Alu 1 302 -9 632 197 148 0 chr6 30337613 30337735 -158941819 + MLT1A1 LTR MaLR 173 312 -53 285 29 0 0 chr6 30337735 30337769 -158941785 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2449 72 0 3 chr6 30337773 30338080 -158941474 + AluY SINE Alu 1 306 -5 1911 249 92 6 chr6 30338081 30338472 -158941082 + L1MEc LINE L1 2278 2730 -3485 2153 180 102 34 chr6 30338472 30338707 -158940847 + MLT1D LTR MaLR 1 219 -286 294 29 0 0 chr6 30338707 30338742 -158940812 + (GA)n Simple_repeat Simple_repeat 2 36 0 2153 180 102 34 chr6 30338742 30338979 -158940575 + MLT1D LTR MaLR 219 505 0 1911 249 92 6 chr6 30338979 30339130 -158940424 + L1MEc LINE L1 2730 2867 -3348 451 205 24 13 chr6 30339129 30339255 -158940299 + L1MA10 LINE L1 6039 6298 0 * 2071 113 0 7 chr6 30339884 30340175 -158939379 + AluSg SINE Alu 1 289 -21 2421 230 60 21 chr6 30340868 30341585 -158937969 + L1ME3 LINE L1 5418 6162 0 276 374 35 0 chr6 30341620 30341735 -158937819 + MIR SINE MIR 23 141 -67 2332 97 0 0 chr6 30341931 30342229 -158937325 + AluSg SINE Alu 1 298 -12 201 143 0 0 chr6 30343303 30343331 -158936223 + MIR SINE MIR 219 246 -16 1602 329 145 21 chr6 30343578 30344578 -158934976 + L3 LINE CR1 452 1575 -2 24 32 0 0 chr6 30345714 30345745 -158933809 + GC_rich Low_complexity Low_complexity 1 31 0 2367 69 20 3 chr6 30345940 30346245 -158933309 + AluSg SINE Alu 1 310 0 401 228 73 16 chr6 30346299 30346422 -158933132 + MER112 DNA MER1_type 106 235 -25 2576 55 0 3 chr6 30346425 30346732 -158932822 - AluSx SINE Alu -6 306 1 393 195 0 0 chr6 30347069 30347146 -158932408 + MLT1A1-int LTR MaLR 206 282 -1089 * 5489 148 24 68 chr6 30347127 30348326 -158931228 + L1MC1 LINE L1 5172 6315 -18 1653 196 13 9 chr6 30348342 30348701 -158930853 + MLT1A1-int LTR MaLR 245 586 -785 575 224 24 8 chr6 30348716 30348841 -158930713 - FLAM_C SINE Alu -15 128 2 955 191 12 0 chr6 30349186 30349359 -158930195 + AluJo SINE Alu 113 287 -25 1505 215 90 60 chr6 30349643 30350316 -158929238 - LTR48 LTR ERV1 0 644 1 214 265 0 15 chr6 30350366 30350495 -158929059 + CT-rich Low_complexity Low_complexity 1 127 0 774 12 0 0 chr6 30351382 30351464 -158928090 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 30352244 30352316 -158927238 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 1918 198 82 108 chr6 30352512 30352727 -158926827 + L1MC4 LINE L1 7328 7547 -495 242 65 0 0 chr6 30352727 30352758 -158926796 - MADE1 DNA Mariner -48 32 2 1918 198 82 108 chr6 30352758 30352780 -158926774 + L1MC4 LINE L1 7547 7568 -474 366 23 0 0 chr6 30352780 30352823 -158926731 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1918 198 82 108 chr6 30352823 30353288 -158926266 + L1MC4 LINE L1 7568 8042 0 2337 89 3 0 chr6 30353811 30354113 -158925441 + AluSx SINE Alu 1 303 -9 1877 112 93 0 chr6 30354387 30354656 -158924898 - AluSg SINE Alu -16 294 1 305 335 43 34 chr6 30354657 30354982 -158924572 + L1ME LINE L1 90 417 -5653 3073 256 63 92 chr6 30355294 30355768 -158923786 + L1M4 LINE L1 2839 3326 -2820 225 122 0 0 chr6 30355768 30355809 -158923745 - LTR66 LTR ERVL -172 438 398 3073 256 63 92 chr6 30355809 30355923 -158923631 + L1M4 LINE L1 3326 3442 -2704 2494 84 0 0 chr6 30355923 30356233 -158923321 + AluSx SINE Alu 1 310 -2 3073 256 63 92 chr6 30356233 30356664 -158922890 + L1M4 LINE L1 3442 3884 -2262 6482 76 8 67 chr6 30356664 30358107 -158921447 - SVA Other Other -551 1386 433 3073 256 63 92 chr6 30358107 30358174 -158921380 + L1M4 LINE L1 3884 3951 -2195 5424 67 36 55 chr6 30358174 30358999 -158920555 - SVA Other Other -520 866 57 264 30 0 0 chr6 30358999 30359032 -158920522 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 3073 256 63 92 chr6 30359032 30359531 -158920023 + L1M4 LINE L1 3950 4404 -1742 1658 185 17 20 chr6 30359531 30359828 -158919726 + AluJb SINE Alu 5 300 -12 3073 256 63 92 chr6 30359828 30360154 -158919400 + L1M4 LINE L1 4404 4738 -1408 700 283 48 10 chr6 30360205 30360495 -158919059 + L1M4 LINE L1 4944 5244 -902 623 178 0 0 chr6 30360548 30360649 -158918905 - AluJ/FLAM SINE Alu -210 102 2 2154 118 0 7 chr6 30360657 30360953 -158918601 - AluSg SINE Alu -16 294 1 1052 163 0 11 chr6 30361257 30361441 -158918113 - AluJb SINE Alu -1 311 130 2382 112 0 0 chr6 30361453 30361765 -158917789 - AluSx SINE Alu 0 312 1 2200 88 27 3 chr6 30361803 30362100 -158917454 - AluSx SINE Alu -8 304 1 2297 110 0 0 chr6 30362258 30362567 -158916987 + AluSx SINE Alu 1 309 -3 1093 141 0 0 chr6 30362652 30362808 -158916746 - MLT1B LTR MaLR -234 156 1 2892 258 96 36 chr6 30362809 30364473 -158915081 + L1M4 LINE L1 3502 5264 -882 1831 87 38 8 chr6 30364473 30364737 -158914817 + MLT2A1 LTR ERVL 1 272 -172 392 145 43 14 chr6 30365170 30365239 -158914315 + MER5A DNA MER1_type 3 73 -116 252 136 0 0 chr6 30365256 30365300 -158914254 + MER74B LTR ERVL 1 44 -578 1462 236 38 28 chr6 30365360 30365758 -158913796 + MER74B LTR ERVL 211 612 -10 1977 130 56 0 chr6 30366034 30366318 -158913236 + AluSx SINE Alu 1 300 -12 695 159 0 90 chr6 30366339 30366484 -158913070 - FLAM_C SINE Alu -1 132 1 1263 243 68 19 chr6 30366491 30366915 -158912639 - L1ME3A LINE L1 -6 6164 5720 224 309 7 33 chr6 30367542 30367694 -158911860 + CT-rich Low_complexity Low_complexity 3 150 0 774 12 0 0 chr6 30368384 30368466 -158911088 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 2472 71 13 0 chr6 30368856 30369164 -158910390 + AluSx SINE Alu 1 312 0 814 238 50 0 chr6 30369191 30369393 -158910161 - L1MC4 LINE L1 -514 7528 7317 25 0 0 0 chr6 30369598 30369623 -158909931 + AT_rich Low_complexity Low_complexity 1 25 0 448 260 46 46 chr6 30369834 30369902 -158909652 + L1M4 LINE L1 4363 4430 -1716 2223 112 3 13 chr6 30369902 30370215 -158909339 + AluSg SINE Alu 1 310 0 448 260 46 46 chr6 30370215 30370450 -158909104 + L1M4 LINE L1 4429 4666 -1480 252 197 0 45 chr6 30370527 30370593 -158908961 + L1M4 LINE L1 4695 4757 -1389 31 68 0 0 chr6 30370599 30370658 -158908896 + AT_rich Low_complexity Low_complexity 1 59 0 1564 250 149 9 chr6 30370686 30371122 -158908432 + MLT2F LTR ERVL 18 514 -149 267 143 0 0 chr6 30371144 30371186 -158908368 + MLT2F LTR ERVL 622 663 0 449 246 82 27 chr6 30371452 30371635 -158907919 + L1MEc LINE L1 34 226 -6170 1700 221 97 45 chr6 30371641 30371809 -158907745 + L1MEc LINE L1 2451 2609 -3606 2198 86 10 7 chr6 30371809 30372124 -158907430 - AluSx SINE Alu 0 312 1 1700 221 97 45 chr6 30372124 30372553 -158907001 + L1MEc LINE L1 2609 3079 -3136 828 180 0 0 chr6 30372586 30372714 -158906840 + AluJ SINE Alu 2 129 -183 630 184 9 28 chr6 30372723 30373048 -158906506 + GA-rich Low_complexity Low_complexity 1 318 0 765 165 24 82 chr6 30373050 30373220 -158906334 + AluJ SINE Alu 136 295 -17 1187 255 61 53 chr6 30373225 30373811 -158905743 + L1MEc LINE L1 3117 3677 -2538 403 167 33 0 chr6 30373811 30373901 -158905653 + L1MB3 LINE L1 6087 6179 -4 1187 255 61 53 chr6 30373901 30374116 -158905438 + L1MEc LINE L1 3677 3889 -2326 186 256 128 13 chr6 30374251 30374329 -158905225 + MIR SINE MIR 121 207 -55 261 257 200 7 chr6 30374963 30375103 -158904451 - L1MC/D LINE L1 -1984 5824 5658 774 12 0 0 chr6 30375609 30375691 -158903863 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 30376314 30376386 -158903168 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 891 249 26 25 chr6 30377030 30377293 -158902261 + L1P2 LINE L1 5514 5774 -380 201 284 20 29 chr6 30377452 30377554 -158902000 + CT-rich Low_complexity Low_complexity 1 101 0 748 24 0 0 chr6 30378398 30378480 -158901074 - tRNA-Ser-TCA tRNA tRNA -3 82 1 1481 223 100 33 chr6 30379566 30379996 -158899558 + MLT1C LTR MaLR 6 464 -3 1889 113 44 20 chr6 30380092 30380385 -158899169 - AluSg SINE Alu -10 300 1 327 330 21 31 chr6 30380402 30380593 -158898961 + L1ME4a LINE L1 5640 5828 -293 297 265 132 32 chr6 30380628 30380847 -158898707 + L1ME4a LINE L1 5814 6054 -67 364 266 63 21 chr6 30381003 30381146 -158898408 + HAL1 LINE L1 1 149 -2358 376 274 6 91 chr6 30381160 30381191 -158898363 - MLT1J2 LTR MaLR -41 409 377 2111 50 0 8 chr6 30381191 30381450 -158898104 - AluSp SINE Alu -13 300 44 376 274 6 91 chr6 30381450 30381593 -158897961 - MLT1J2 LTR MaLR -73 377 250 256 341 73 8 chr6 30381582 30381705 -158897849 - MLT1I LTR MaLR -211 198 68 * 530 286 207 57 chr6 30381773 30381939 -158897615 + HAL1 LINE L1 131 271 -2236 2181 95 0 3 chr6 30381939 30382249 -158897305 + AluSg SINE Alu 1 309 0 530 286 207 57 chr6 30382249 30382865 -158896689 + HAL1 LINE L1 271 1031 -1476 456 127 0 0 chr6 30382884 30382947 -158896607 - AluJ/FRAM SINE Alu -26 286 224 215 311 184 0 chr6 30383324 30383427 -158896127 + L2 LINE L2 2215 2336 -978 23 0 0 0 chr6 30383532 30383555 -158895999 + AT_rich Low_complexity Low_complexity 1 23 0 1173 171 47 9 chr6 30383563 30383774 -158895780 + AluJb SINE Alu 87 305 -7 507 249 76 10 chr6 30383774 30383971 -158895583 + HAL1 LINE L1 1079 1288 -1219 2270 93 3 28 chr6 30384008 30384329 -158895225 - AluSp SINE Alu 0 313 1 357 45 15 30 chr6 30384391 30384457 -158895097 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 541 245 31 6 chr6 30384484 30384643 -158894911 + HAL1 LINE L1 1488 1650 -857 278 250 22 0 chr6 30384661 30384753 -158894801 - LTR33A LTR ERVL -17 506 413 588 258 60 56 chr6 30384813 30385065 -158894489 - LTR33A LTR ERVL -269 254 2 670 268 115 14 chr6 30385078 30385287 -158894267 + HAL1 LINE L1 1646 1875 -632 484 251 68 21 chr6 30385432 30385623 -158893931 + HAL1 LINE L1 2078 2277 -230 263 329 82 18 chr6 30385633 30385803 -158893751 - LTR33 LTR ERVL 0 521 341 450 307 68 5 chr6 30385892 30386084 -158893470 - LTR33 LTR ERVL -291 230 27 2013 110 37 17 chr6 30386133 30386433 -158893121 + AluSx SINE Alu 1 306 -6 625 215 157 0 chr6 30386457 30386629 -158892925 - MIR SINE MIR 0 262 64 1289 171 0 13 chr6 30386712 30386946 -158892608 + L1MB5 LINE L1 5910 6140 -34 1209 218 5 9 chr6 30387047 30387267 -158892287 + MER20 DNA MER1_type 1 219 0 261 0 0 0 chr6 30387984 30388013 -158891541 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 199 307 61 83 chr6 30389287 30389515 -158890039 + L2 LINE L2 3012 3234 -38 2895 170 70 29 chr6 30389731 30390146 -158889408 - L1MC3 LINE L1 -49 7736 7288 2074 120 0 0 chr6 30390146 30390452 -158889102 - AluSx SINE Alu 0 306 1 2895 170 70 29 chr6 30390452 30390623 -158888931 - L1MC3 LINE L1 -497 7288 7125 229 79 53 0 chr6 30390706 30390744 -158888810 - L1MD3 LINE L1 -1018 6977 6938 22 0 0 0 chr6 30390750 30390772 -158888782 + AT_rich Low_complexity Low_complexity 1 22 0 708 0 0 0 chr6 30392099 30392171 -158887383 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 304 257 71 86 chr6 30393070 30393210 -158886344 - L1ME3A LINE L1 -285 5885 5748 241 281 16 16 chr6 30393748 30393810 -158885744 - LTR67 LTR ERVL -383 174 113 787 261 25 10 chr6 30393810 30394009 -158885545 - MLT1A2 LTR MaLR 0 374 173 696 205 0 0 chr6 30394270 30394392 -158885162 + AluJb SINE Alu 2 123 -189 38 75 0 0 chr6 30394688 30394768 -158884786 + AT_rich Low_complexity Low_complexity 1 80 0 31 82 0 0 chr6 30395312 30395385 -158884169 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr6 30395520 30395543 -158884011 + AT_rich Low_complexity Low_complexity 1 23 0 1327 113 49 24 chr6 30395715 30395898 -158883656 - AluSc SINE Alu 0 309 79 291 28 0 0 chr6 30395898 30395934 -158883620 + (TG)n Simple_repeat Simple_repeat 2 37 0 1327 113 49 24 chr6 30395934 30396016 -158883538 - AluSc SINE Alu -230 79 1 217 405 0 0 chr6 30396553 30396721 -158882833 + (TGG)n Simple_repeat Simple_repeat 1 168 0 983 185 0 0 chr6 30397470 30397632 -158881922 + AluSg/x SINE Alu 137 298 -14 545 229 94 24 chr6 30397700 30397768 -158881786 - L1MDa LINE L1 -5969 571 509 450 0 0 0 chr6 30397768 30397818 -158881736 + (TG)n Simple_repeat Simple_repeat 2 51 0 545 229 94 24 chr6 30397818 30397919 -158881635 - L1MDa LINE L1 -6031 509 390 2404 55 0 29 chr6 30398074 30398386 -158881168 + AluY SINE Alu 1 303 -8 2305 81 3 0 chr6 30398422 30398749 -158880805 - AluSp SINE Alu 0 330 3 2396 72 3 3 chr6 30398774 30399080 -158880474 - AluY SINE Alu -5 306 1 2379 89 0 0 chr6 30399180 30399482 -158880072 - AluSg SINE Alu -8 302 1 252 319 29 0 chr6 30399483 30399552 -158880002 - HERV16 LTR ERVL -3434 1562 1492 508 296 44 0 chr6 30399698 30399857 -158879697 - HERV16 LTR ERVL -4830 166 1 529 319 13 22 chr6 30399857 30400089 -158879465 - LTR16B LTR ERVL 0 464 235 381 235 59 0 chr6 30400246 30400331 -158879223 - LTR16A LTR ERVL -354 96 7 29 0 0 0 chr6 30400434 30400463 -158879091 + AT_rich Low_complexity Low_complexity 1 29 0 4400 181 47 21 chr6 30400471 30400949 -158878605 - L1MA9 LINE L1 -38 6274 5810 495 0 0 0 chr6 30400949 30401004 -158878550 + (CA)n Simple_repeat Simple_repeat 2 56 0 4400 181 47 21 chr6 30401004 30401460 -158878094 - L1MA9 LINE L1 -502 5810 5316 4146 168 55 62 chr6 30401495 30401932 -158877622 - L1MA9 LINE L1 -810 5336 4898 5537 59 14 15 chr6 30401932 30402644 -158876910 - SVA Other Other 0 1386 676 4146 168 55 62 chr6 30402644 30402892 -158876662 - L1MA9 LINE L1 -1248 4898 4650 255 61 0 0 chr6 30402892 30402925 -158876629 + (TG)n Simple_repeat Simple_repeat 1 33 0 4146 168 55 62 chr6 30402925 30403278 -158876276 - L1MA9 LINE L1 -1496 4650 4304 678 281 118 30 chr6 30403303 30403972 -158875582 + L1M4 LINE L1 2732 3459 -2687 395 287 13 6 chr6 30404308 30404465 -158875089 - L1MC4a LINE L1 -1956 5852 5695 754 24 0 0 chr6 30404778 30404860 -158874694 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 2040 121 0 0 chr6 30406160 30406440 -158873114 + AluSx SINE Alu 5 284 -28 216 0 0 0 chr6 30406662 30406686 -158872868 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 250 136 0 36 chr6 30406811 30406873 -158872681 + L1MA9 LINE L1 6073 6127 -41 830 153 0 0 chr6 30406879 30406997 -158872557 - FLAM_C SINE Alu -15 118 1 1033 109 69 0 chr6 30407000 30407175 -158872379 + L1MA6 LINE L1 6112 6298 -2 23 54 0 0 chr6 30407362 30407399 -158872155 + AT_rich Low_complexity Low_complexity 1 37 0 2211 84 7 0 chr6 30407628 30407913 -158871641 - AluSc SINE Alu 0 309 23 2099 99 3 7 chr6 30409251 30409534 -158870020 + AluSq SINE Alu 1 282 -31 309 26 0 0 chr6 30409534 30409572 -158869982 + (CA)n Simple_repeat Simple_repeat 1 38 0 280 395 0 18 chr6 30409580 30409694 -158869860 - L2 LINE L2 -22 3250 3139 733 130 0 26 chr6 30410339 30410454 -158869100 + FLAM_A SINE Alu 22 133 -9 2231 93 0 43 chr6 30410695 30411018 -158868536 + AluSx SINE Alu 1 309 -3 413 284 11 103 chr6 30411596 30411638 -158867916 + L1M4 LINE L1 2472 2516 -3630 2322 67 6 29 chr6 30411638 30411953 -158867601 + AluY SINE Alu 1 308 -3 413 284 11 103 chr6 30411953 30412120 -158867434 + L1M4 LINE L1 2516 2655 -3491 1742 124 73 4 chr6 30412120 30412395 -158867159 - AluJb SINE Alu -16 296 3 413 284 11 103 chr6 30412395 30412445 -158867109 + L1M4 LINE L1 2655 2708 -3438 221 0 35 0 chr6 30412447 30412476 -158867078 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1952 81 7 29 chr6 30412621 30413011 -158866543 + AluSp SINE Alu 46 429 0 23 33 0 0 chr6 30413137 30413167 -158866387 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chr6 30413305 30413344 -158866210 + (A)n Simple_repeat Simple_repeat 1 39 0 763 12 0 0 chr6 30414345 30414427 -158865127 - tRNA-Ser-TCA tRNA tRNA -3 82 1 432 298 11 11 chr6 30414736 30414914 -158864640 + L1MC4a LINE L1 5695 5872 -1936 283 314 16 16 chr6 30416193 30416314 -158863240 - L1ME4a LINE L1 -226 5895 5775 586 161 0 105 chr6 30416423 30416547 -158863007 + FLAM_C SINE Alu 2 112 -31 254 186 23 128 chr6 30416606 30416650 -158862904 - MER5A DNA MER1_type -1 188 155 2191 78 0 11 chr6 30416650 30416958 -158862596 - AluSc SINE Alu 0 307 3 254 186 23 128 chr6 30416958 30416998 -158862556 - MER5A DNA MER1_type -34 155 112 23 0 0 0 chr6 30417000 30417023 -158862531 + GC_rich Low_complexity Low_complexity 1 23 0 471 250 17 0 chr6 30417027 30417143 -158862411 - MER5A DNA MER1_type -65 124 7 788 0 0 0 chr6 30418259 30418341 -158861213 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 203 183 0 146 chr6 30418634 30418716 -158860838 - MIR SINE MIR -71 191 122 210 190 86 35 chr6 30418993 30419051 -158860503 - MIR SINE MIR -110 98 38 375 23 0 0 chr6 30419263 30419307 -158860247 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 183 80 0 0 chr6 30419655 30419680 -158859874 + (A)n Simple_repeat Simple_repeat 1 25 0 1018 162 68 43 chr6 30419870 30420104 -158859450 + AluJb SINE Alu 1 240 -72 247 150 0 0 chr6 30420158 30420198 -158859356 + U2 snRNA snRNA 1 40 -148 685 14 0 0 chr6 30420322 30420394 -158859160 - tRNA-Gln-CAG tRNA tRNA -3 72 1 1454 67 0 0 chr6 30421238 30421417 -158858137 + AluY SINE Alu 133 311 0 613 299 74 44 chr6 30421745 30421758 -158857796 + L1M4 LINE L1 2476 2487 -3659 2246 61 6 96 chr6 30421758 30422101 -158857453 + AluSx SINE Alu 1 312 0 613 299 74 44 chr6 30422101 30422792 -158856762 + L1M4 LINE L1 2487 3201 -2945 956 150 75 6 chr6 30422815 30422988 -158856566 - L1MB3 LINE L1 -3 6180 5996 379 232 18 18 chr6 30423015 30423127 -158856427 + L1M4 LINE L1 4616 4727 -1419 367 309 46 21 chr6 30423260 30423454 -158856100 + L1M4 LINE L1 4931 5129 -1017 568 245 67 46 chr6 30423455 30423737 -158855817 - HAL1 LINE L1 -1165 1342 1055 262 270 12 62 chr6 30423772 30423891 -158855663 + L1MDa LINE L1 27 587 -5943 2241 192 46 94 chr6 30423934 30424863 -158854691 + L1MD2 LINE L1 4561 5424 -742 1178 219 84 81 chr6 30424864 30425020 -158854534 + L1MD2 LINE L1 5709 5863 -496 2398 71 0 0 chr6 30425020 30425317 -158854237 - AluY SINE Alu -14 297 1 1178 219 84 81 chr6 30425317 30425566 -158853988 + L1MD2 LINE L1 5863 6115 -244 740 37 0 0 chr6 30425983 30426065 -158853489 - tRNA-Ser-TCC tRNA tRNA -3 82 1 2147 110 0 30 chr6 30427303 30427604 -158851950 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr6 30427607 30427630 -158851924 + AT_rich Low_complexity Low_complexity 1 23 0 2328 99 3 0 chr6 30428050 30428362 -158851192 - AluSp SINE Alu 0 313 1 2290 88 0 22 chr6 30428388 30428707 -158850847 + AluSp SINE Alu 2 313 0 1345 220 13 27 chr6 30428863 30429163 -158850391 - MER90 LTR ERV1 0 614 319 2169 104 0 13 chr6 30429398 30429706 -158849848 - AluSx SINE Alu -8 304 1 1890 87 56 31 chr6 30429896 30430184 -158849370 - AluSc SINE Alu -14 295 1 2285 98 0 3 chr6 30432125 30432431 -158847123 - AluSx SINE Alu -7 305 1 213 204 0 0 chr6 30432489 30432535 -158847019 - MIR SINE MIR -102 106 70 2325 97 0 3 chr6 30433621 30433932 -158845622 - AluSg SINE Alu 0 310 1 956 155 77 0 chr6 30434323 30434478 -158845076 - MER21B LTR ERV1 -373 490 324 243 28 0 0 chr6 30434507 30434543 -158845011 - Alu SINE Alu 0 301 266 536 34 0 159 chr6 30434754 30434842 -158844712 + tRNA-Arg-AGA tRNA tRNA 1 74 -2 229 196 0 20 chr6 30435567 30435618 -158843936 + LTR66 LTR ERVL 390 439 -171 2341 45 0 28 chr6 30436006 30436331 -158843223 + AluY SINE Alu 1 317 0 256 317 70 11 chr6 30436591 30436777 -158842777 - L1M4 LINE L1 -1273 4873 4677 23 54 0 0 chr6 30436869 30436906 -158842648 + AT_rich Low_complexity Low_complexity 1 37 0 1868 149 27 10 chr6 30436982 30437277 -158842277 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 30437499 30437527 -158842027 + AT_rich Low_complexity Low_complexity 1 28 0 571 168 65 0 chr6 30437622 30437729 -158841825 + MLT2B2 LTR ERVL 1 114 -401 2133 116 3 26 chr6 30439562 30439873 -158839681 + AluSx SINE Alu 2 305 -7 1961 140 4 0 chr6 30440188 30440467 -158839087 + AluSx SINE Alu 1 280 -32 24 67 0 0 chr6 30440587 30440632 -158838922 + AT_rich Low_complexity Low_complexity 1 45 0 2665 91 19 38 chr6 30440637 30441072 -158838482 + MER4A LTR ERV1 1 443 -221 4063 131 22 5 chr6 30441072 30441696 -158837858 + MER41B LTR ERV1 1 635 0 2665 91 19 38 chr6 30441696 30441732 -158837822 + MER4A LTR ERV1 443 478 -186 2341 88 0 26 chr6 30441732 30442038 -158837516 + AluSp SINE Alu 1 298 -15 2665 91 19 38 chr6 30442038 30442169 -158837385 + MER4A LTR ERV1 478 660 -4 24 0 0 0 chr6 30442434 30442458 -158837096 + AT_rich Low_complexity Low_complexity 1 24 0 1230 202 55 87 chr6 30442467 30442814 -158836740 + MER58B DNA MER1_type 1 336 -5 1964 130 4 0 chr6 30442868 30443172 -158836382 + AluSx SINE Alu 5 309 0 522 322 81 31 chr6 30443214 30443822 -158835732 + HAL1b LINE L1 187 824 -524 778 213 85 69 chr6 30444054 30444352 -158835202 + MER58D DNA MER1_type 108 291 -2129 2035 136 0 19 chr6 30444352 30444660 -158834894 + AluSx SINE Alu 1 302 -10 778 213 85 69 chr6 30444660 30444755 -158834799 + MER58D DNA MER1_type 291 383 -3 2088 159 138 56 chr6 30445201 30445458 -158834096 + MLT1D LTR MaLR 1 236 -269 2281 106 0 10 chr6 30445458 30445770 -158833784 + AluSg SINE Alu 1 309 -1 2088 159 138 56 chr6 30445770 30445977 -158833577 + MLT1D LTR MaLR 236 503 -2 1038 185 110 15 chr6 30446032 30446232 -158833322 - MER20 DNA MER1_type 0 219 1 239 196 59 147 chr6 30446840 30446942 -158832612 - L2 LINE L2 0 3313 3221 1202 208 17 0 chr6 30446959 30447190 -158832364 - MER90 LTR ERV1 0 614 380 897 96 0 0 chr6 30447190 30447315 -158832239 - AluY SINE Alu -12 299 175 1265 101 5 53 chr6 30447325 30447533 -158832021 + AluY SINE Alu 114 311 0 2045 127 0 13 chr6 30447561 30447861 -158831693 - AluSx SINE Alu -16 296 1 585 97 0 0 chr6 30448638 30448710 -158830844 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 2575 36 0 55 chr6 30449600 30449929 -158829625 + AluY SINE Alu 1 311 0 2259 114 0 0 chr6 30450113 30450421 -158829133 + AluSx SINE Alu 1 308 -4 275 306 0 12 chr6 30450652 30450737 -158828817 + CT-rich Low_complexity Low_complexity 2 85 0 180 0 0 0 chr6 30451072 30451092 -158828462 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 262 210 32 0 chr6 30451262 30451324 -158828230 - tRNA-Met-i tRNA tRNA -9 66 3 3963 196 25 28 chr6 30452105 30452922 -158826632 + HERVL74 LTR ERVL 1283 2096 -3589 2213 109 0 0 chr6 30452928 30453222 -158826332 + AluSq SINE Alu 1 294 -19 484 289 57 19 chr6 30453443 30453654 -158825900 + L1MC/D LINE L1 5606 5824 -1984 1350 168 0 22 chr6 30453654 30453886 -158825668 + AluJo SINE Alu 1 227 -85 258 272 72 8 chr6 30454382 30454507 -158825047 + LTR37B LTR ERV1 1 133 -335 314 217 14 29 chr6 30454560 30454700 -158824854 + LTR37A LTR ERV1 115 259 -209 746 113 0 0 chr6 30454720 30454849 -158824705 - AluSg/x SINE Alu 0 315 187 1478 51 4 146 chr6 30454850 30455103 -158824451 - AluSg SINE Alu -93 217 1 2136 78 7 24 chr6 30455603 30455896 -158823658 + AluSp SINE Alu 1 288 -25 29 0 0 0 chr6 30455896 30455925 -158823629 + AT_rich Low_complexity Low_complexity 1 29 0 636 28 0 0 chr6 30456027 30456099 -158823455 - tRNA-Asp-GAC tRNA tRNA -3 72 1 291 270 111 16 chr6 30456372 30456498 -158823056 + L2 LINE L2 2947 3084 -188 1718 227 82 2 chr6 30456802 30457229 -158822325 - MLT1C LTR MaLR -6 461 1 690 271 22 4 chr6 30457532 30457761 -158821793 + L1M4 LINE L1 4479 4711 -1435 2122 125 0 3 chr6 30458010 30458307 -158821247 + AluSq SINE Alu 1 296 -17 492 287 41 28 chr6 30458593 30458781 -158820773 - LTR33A LTR ERVL -299 222 29 481 348 49 52 chr6 30458940 30459268 -158820286 - LTR33A LTR ERVL -196 327 1 385 259 80 70 chr6 30459476 30459973 -158819581 + L1M4 LINE L1 5270 5761 -413 2252 104 3 3 chr6 30460187 30460495 -158819059 + AluSp SINE Alu 1 308 -5 2559 48 0 6 chr6 30460636 30460947 -158818607 + AluY SINE Alu 1 309 -2 678 298 146 22 chr6 30461022 30461391 -158818163 - LTR16A LTR ERVL -6 444 30 299 311 34 14 chr6 30461548 30461696 -158817858 + L1P LINE L1 4878 5028 -1118 1693 246 101 23 chr6 30461920 30462525 -158817029 + L1MC4a LINE L1 5255 5906 -1902 426 149 24 30 chr6 30462537 30462705 -158816849 + (TA)n Simple_repeat Simple_repeat 1 167 0 684 257 110 50 chr6 30462747 30462805 -158816749 + L1MC4a LINE L1 5902 5955 -1853 1974 94 4 0 chr6 30462805 30463059 -158816495 + AluSg SINE Alu 3 257 -53 270 81 0 0 chr6 30463064 30463101 -158816453 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 684 257 110 50 chr6 30463101 30463321 -158816233 + L1MC4a LINE L1 5958 6223 -1585 2206 126 7 0 chr6 30463321 30463631 -158815923 + AluSq SINE Alu 1 312 -1 684 257 110 50 chr6 30463631 30463781 -158815773 + L1MC4a LINE L1 6223 6363 -1445 651 27 0 0 chr6 30464384 30464457 -158815097 - tRNA-Lys-AAA tRNA tRNA -3 73 1 651 0 0 0 chr6 30465391 30465463 -158814091 - tRNA-Met-i tRNA tRNA -3 72 1 288 130 0 0 chr6 30465749 30465795 -158813759 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 704 280 63 109 chr6 30466275 30466796 -158812758 + MER45C DNA AcHobo 3 499 -454 513 216 0 0 chr6 30466804 30466906 -158812648 + MER45C DNA AcHobo 852 953 0 2251 95 3 25 chr6 30467001 30467316 -158812238 + AluSg SINE Alu 1 308 -2 1901 164 50 70 chr6 30467559 30468034 -158811520 + MER31B LTR ERV1 1 466 0 22 56 0 0 chr6 30468053 30468089 -158811465 + AT_rich Low_complexity Low_complexity 1 36 0 2280 116 0 0 chr6 30468134 30468445 -158811109 - AluSq SINE Alu 0 313 3 2236 110 0 16 chr6 30468489 30468806 -158810748 - AluSx SINE Alu 0 312 1 754 113 9 0 chr6 30468982 30469088 -158810466 + U6 snRNA snRNA 1 107 0 323 176 35 120 chr6 30469131 30469186 -158810368 - MER5B DNA MER1_type 0 178 120 1810 159 8 34 chr6 30469186 30469291 -158810263 + MER2 DNA MER2_type 2 108 -236 3479 191 52 64 chr6 30469291 30470272 -158809282 - LTR5 LTR ERVK 0 969 1 1810 159 8 34 chr6 30470272 30470518 -158809036 + MER2 DNA MER2_type 108 344 0 323 176 35 120 chr6 30470518 30470604 -158808950 - MER5B DNA MER1_type -58 120 49 251 253 118 39 chr6 30471336 30471514 -158808040 + LTR37B LTR ERV1 7 198 -270 381 226 65 8 chr6 30471604 30471728 -158807826 + LTR37A LTR ERV1 276 406 -20 2292 86 3 26 chr6 30472049 30472362 -158807192 - AluSx SINE Alu -6 306 1 1325 129 129 16 chr6 30472556 30472811 -158806743 + AluSg SINE Alu 1 284 -26 1433 214 35 86 chr6 30472952 30473250 -158806304 + LTR43 LTR ERV1 96 359 -243 1922 100 0 0 chr6 30473250 30473501 -158806053 + AluSg SINE Alu 1 251 -59 1433 214 35 86 chr6 30473501 30473715 -158805839 + LTR43 LTR ERV1 359 582 -20 315 0 0 0 chr6 30474022 30474057 -158805497 + (A)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr6 30474057 30474085 -158805469 + (TA)n Simple_repeat Simple_repeat 2 29 0 941 145 179 43 chr6 30474535 30474770 -158804784 - AluJo SINE Alu -7 305 39 2232 126 0 19 chr6 30474787 30475105 -158804449 - AluSx SINE Alu 0 312 1 554 9 0 222 chr6 30475138 30475246 -158804308 - tRNA-Leu-TTG tRNA tRNA -2 84 1 22 35 0 0 chr6 30475748 30475777 -158803777 + AT_rich Low_complexity Low_complexity 1 29 0 2192 93 0 10 chr6 30476074 30476364 -158803190 - AluSx SINE Alu -25 287 1 204 40 0 0 chr6 30476364 30476389 -158803165 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2099 111 4 0 chr6 30476389 30476669 -158802885 - AluSx SINE Alu -29 283 3 2425 76 3 0 chr6 30476736 30477037 -158802517 + AluY SINE Alu 1 302 -9 289 275 53 23 chr6 30477154 30477285 -158802269 - L1MC/D LINE L1 -2056 5752 5618 206 250 0 0 chr6 30477846 30477898 -158801656 + T-rich Low_complexity Low_complexity 1 52 0 551 9 0 229 chr6 30478207 30478316 -158801238 - tRNA-Leu-TTG tRNA tRNA -2 84 1 2379 65 0 7 chr6 30479018 30479312 -158800242 - AluSx SINE Alu -20 292 1 255 125 0 0 chr6 30479393 30479433 -158800121 + (A)n Simple_repeat Simple_repeat 1 40 0 2008 88 46 0 chr6 30479565 30479827 -158799727 - AluSg SINE Alu -36 274 1 2378 82 0 10 chr6 30480122 30480427 -158799127 + AluSq SINE Alu 1 302 -11 1479 261 91 63 chr6 30480696 30481083 -158798471 + MLT1G1 LTR MaLR 1 411 -184 1802 173 3 7 chr6 30481083 30481372 -158798182 - AluJb SINE Alu -24 288 1 1479 261 91 63 chr6 30481372 30481554 -158798000 + MLT1G1 LTR MaLR 411 586 -9 299 139 14 0 chr6 30481558 30481614 -158797940 - LTR41 LTR ERVL 0 795 723 953 241 105 30 chr6 30481624 30482152 -158797402 - LTR41 LTR ERVL -157 616 15 2307 98 3 25 chr6 30482445 30482761 -158796793 + AluSq SINE Alu 1 309 -4 872 44 0 9 chr6 30482837 30482951 -158796603 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 716 164 15 22 chr6 30482951 30483085 -158796469 + AluJo/FLAM SINE Alu 1 133 -169 245 91 0 0 chr6 30483085 30483118 -158796436 + FLAM_C SINE Alu 132 164 0 * 1783 170 76 76 chr6 30483114 30483537 -158796017 + MER52A LTR ERV1 1333 1755 0 206 31 0 31 chr6 30484237 30484269 -158795285 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 761 200 130 0 chr6 30484623 30484808 -158794746 - MER3 DNA MER1_type 0 209 1 2125 169 31 78 chr6 30484939 30485131 -158794423 + MSTB1 LTR MaLR 5 204 -228 2176 93 4 0 chr6 30485131 30485411 -158794143 - AluSc SINE Alu -28 281 1 2125 169 31 78 chr6 30485411 30485667 -158793887 + MSTB1 LTR MaLR 204 432 0 410 309 117 61 chr6 30485948 30486340 -158793214 - L2 LINE L2 -35 3278 2865 203 365 42 0 chr6 30486495 30486591 -158792963 + MIR SINE MIR 32 131 -77 1067 170 22 0 chr6 30486718 30486900 -158792654 + MER5A DNA MER1_type 1 186 -3 2462 65 0 40 chr6 30487014 30487337 -158792217 - AluY SINE Alu -1 310 1 699 230 143 80 chr6 30487409 30487709 -158791845 + MER20B DNA MER1_type 79 397 -386 635 152 76 58 chr6 30487734 30487905 -158791649 + MER20B DNA MER1_type 610 783 0 396 235 0 41 chr6 30487959 30488057 -158791497 - MIR SINE MIR -147 115 22 1295 217 94 53 chr6 30488061 30488495 -158791059 + L1MD2 LINE L1 5662 6113 -246 342 0 0 0 chr6 30488716 30488754 -158790800 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 229 86 0 chr6 30489902 30489972 -158789582 - MIR SINE MIR 0 262 187 570 187 66 42 chr6 30489972 30490095 -158789459 + LTR65 LTR ERV1 1 130 -539 2262 114 71 0 chr6 30490095 30490447 -158789107 - MER51B LTR ERV1 0 377 1 570 187 66 42 chr6 30490447 30490489 -158789065 + LTR65 LTR ERV1 130 170 -499 333 152 30 0 chr6 30490597 30490663 -158788891 - MIR SINE MIR -109 153 86 202 357 57 0 chr6 30490729 30490799 -158788755 - MIR SINE MIR -115 93 20 1495 111 27 13 chr6 30490982 30491207 -158788347 + AluSg/x SINE Alu 79 306 -6 199 193 18 18 chr6 30491294 30491351 -158788203 + MIR SINE MIR 172 228 -34 529 122 89 0 chr6 30491686 30491776 -158787778 + MER4A LTR ERV1 1 98 -566 1653 146 168 73 chr6 30491776 30492145 -158787409 + MER4A LTR ERV1 261 664 0 273 246 0 15 chr6 30492235 30492300 -158787254 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 453 273 31 8 chr6 30492457 30492585 -158786969 - L1ME2 LINE L1 -36 6128 5998 3395 72 0 20 chr6 30492586 30493043 -158786511 - LTR7 LTR ERV1 -2 448 1 763 201 87 7 chr6 30493125 30493274 -158786280 + FRAM SINE Alu 1 160 -16 2361 144 28 104 chr6 30493889 30494397 -158785157 + L1MCa LINE L1 299 767 -5659 519 248 64 0 chr6 30494397 30494506 -158785048 + AluJ SINE Alu 54 169 -143 7021 128 201 26 chr6 30494509 30495952 -158783602 - pTR5 LTR ERV1 0 2438 743 779 154 8 0 chr6 30495952 30496075 -158783479 + AluJ SINE Alu 166 289 -23 2355 90 0 7 chr6 30496081 30496381 -158783173 + AluSx SINE Alu 1 298 -14 2058 90 3 68 chr6 30496381 30496703 -158782851 + AluSq SINE Alu 1 301 -12 6286 175 77 59 chr6 30496723 30497168 -158782386 + L1MCa LINE L1 762 1198 -5228 2151 138 0 0 chr6 30497168 30497472 -158782082 + AluSx SINE Alu 1 304 -8 6286 175 77 59 chr6 30497472 30497752 -158781802 + L1MCa LINE L1 1198 1472 -4954 1590 209 24 34 chr6 30497752 30498130 -158781424 - MLT1A2 LTR MaLR 0 374 1 6286 175 77 59 chr6 30498130 30498512 -158781042 + L1MCa LINE L1 1472 1846 -4580 2367 109 0 0 chr6 30498512 30498814 -158780740 + AluSx SINE Alu 1 302 -10 6286 175 77 59 chr6 30498814 30499066 -158780488 + L1MCa LINE L1 1846 2092 -4334 2368 88 7 0 chr6 30499066 30499362 -158780192 + AluSq SINE Alu 1 298 -15 6286 175 77 59 chr6 30499362 30500508 -158779046 + L1MCa LINE L1 2092 3316 -3110 3949 177 77 34 chr6 30500497 30502216 -158777338 + L1MB4 LINE L1 4395 6174 -6 * 257 301 96 51 chr6 30502716 30502872 -158776682 + MER5A DNA MER1_type 27 189 0 768 144 14 14 chr6 30503712 30503858 -158775696 - MIR SINE MIR -22 240 95 2055 81 30 0 chr6 30503860 30504131 -158775423 + AluSq SINE Alu 1 279 -34 2051 86 0 11 chr6 30505532 30505800 -158773754 - AluSq SINE Alu -10 303 39 188 389 53 0 chr6 30506379 30506492 -158773062 - MIR3 SINE MIR -48 160 42 1972 128 14 11 chr6 30506588 30506870 -158772684 - AluSx SINE Alu -17 295 13 403 293 96 6 chr6 30507129 30507286 -158772268 + MIR SINE MIR 49 219 -43 2082 145 129 0 chr6 30507514 30507893 -158771661 + MSTA LTR MaLR 1 428 0 9843 152 31 15 chr6 30507895 30509518 -158770036 + MSTA-int LTR MaLR 3 1651 0 2401 155 89 0 chr6 30509518 30509911 -158769643 + MSTA LTR MaLR 1 428 0 1822 193 242 22 chr6 30510453 30510773 -158768781 - MER20B DNA MER1_type -61 722 474 1977 161 0 7 chr6 30510773 30511077 -158768477 + AluJb SINE Alu 1 302 -10 1822 193 242 22 chr6 30511077 30511348 -158768206 - MER20B DNA MER1_type -309 474 1 2494 127 22 103 chr6 30511389 30511853 -158767701 - MSTB LTR MaLR 0 426 1 2227 107 0 0 chr6 30511967 30512256 -158767298 - AluSx SINE Alu -19 293 5 2490 60 0 3 chr6 30512907 30513207 -158766347 + AluY SINE Alu 1 299 -12 252 300 167 8 chr6 30513430 30513550 -158766004 - MER5A DNA MER1_type -15 174 36 191 77 0 77 chr6 30513550 30513589 -158765965 + (TATG)n Simple_repeat Simple_repeat 3 38 0 375 246 141 7 chr6 30513919 30514061 -158765493 + MIR3 SINE MIR 42 202 -6 212 197 0 28 chr6 30515910 30515981 -158763573 + CT-rich Low_complexity Low_complexity 4 72 0 1500 194 49 7 chr6 30516931 30517219 -158762335 - AluJo SINE Alu -9 303 4 388 250 21 0 chr6 30518128 30518224 -158761330 + MIR SINE MIR 164 261 -1 2204 120 89 124 chr6 30518876 30519065 -158760489 + Tigger3b DNA MER2_type 1 195 -2833 2122 120 7 0 chr6 30519065 30519357 -158760197 + AluSx SINE Alu 1 294 -18 2204 120 89 124 chr6 30519357 30519685 -158759869 + Tigger3b DNA MER2_type 195 500 -731 3963 176 40 1 chr6 30519693 30520339 -158759215 - HERVL18 LTR ERVL -2659 3388 2718 1433 162 11 2 chr6 30520336 30520610 -158758944 - HERVL18 LTR ERVL -3595 2452 2119 * 1053 164 14 19 chr6 30520609 30520957 -158758597 - HERVL18 LTR ERVL -4237 1810 1401 * 922 213 18 0 chr6 30520999 30521168 -158758386 - HERVL18 LTR ERVL -5382 665 494 * 1475 189 11 11 chr6 30521153 30521438 -158758116 - HERVL18 LTR ERVL -5744 303 19 3374 124 76 44 chr6 30521459 30522054 -158757500 - LTR18B LTR ERVL 0 614 1 2612 55 0 3 chr6 30523547 30523859 -158755695 + AluY SINE Alu 1 311 0 2994 125 31 37 chr6 30524021 30524534 -158755020 + Tigger3b DNA MER2_type 723 1232 0 2150 113 0 0 chr6 30524871 30525162 -158754392 - AluSx SINE Alu -21 291 1 859 181 78 120 chr6 30525330 30525689 -158753865 - MLT1A2 LTR MaLR -5 369 26 1529 121 9 0 chr6 30526677 30526892 -158752662 - LTR62 LTR ERVK -2 717 501 1425 94 146 0 chr6 30526892 30527104 -158752450 - MER4E LTR ERV1 0 779 537 754 188 0 0 chr6 30527107 30527224 -158752330 + FRAM SINE Alu 50 166 -10 2261 80 3 71 chr6 30527285 30527611 -158751943 + AluSp SINE Alu 1 304 -9 629 256 35 42 chr6 30527771 30528056 -158751498 - L1MC5 LINE L1 -33 7928 7646 1820 264 54 34 chr6 30528442 30529064 -158750490 + L2 LINE L2 2491 3131 -182 360 228 24 57 chr6 30529251 30529374 -158750180 + MIR SINE MIR 63 181 -81 403 253 147 0 chr6 30530051 30530146 -158749408 + MIR SINE MIR 11 119 -143 1715 154 104 17 chr6 30530146 30530503 -158749051 - MLT1C LTR MaLR 0 467 80 357 331 39 16 chr6 30530539 30530666 -158748888 + MIR SINE MIR 115 244 -18 210 313 73 10 chr6 30530992 30531088 -158748466 + MIR SINE MIR 40 141 -67 289 250 71 9 chr6 30531151 30531263 -158748291 - MIR SINE MIR -70 192 74 255 315 110 20 chr6 30531887 30532033 -158747521 + MIR3 SINE MIR 36 194 -14 272 239 11 43 chr6 30532064 30532156 -158747398 + L1ME4a LINE L1 5838 5926 -195 420 319 51 2 chr6 30532802 30533091 -158746463 - L1MC/D LINE L1 -646 5518 5255 22 0 0 0 chr6 30533281 30533303 -158746251 + AT_rich Low_complexity Low_complexity 1 22 0 1912 114 10 33 chr6 30533437 30533736 -158745818 - AluSx SINE Alu -18 294 3 525 44 0 0 chr6 30533858 30533926 -158745628 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1026 264 75 12 chr6 30533954 30534287 -158745267 + L2 LINE L2 2414 2767 -547 284 336 132 23 chr6 30534286 30534506 -158745048 + L2 LINE L2 2910 3153 -160 * 184 182 0 0 chr6 30534544 30534577 -158744977 + L2 LINE L2 3280 3312 -1 3575 161 35 5 chr6 30534879 30535739 -158743815 + L1MC1 LINE L1 5396 6326 -7 596 269 92 17 chr6 30535774 30536012 -158743542 + L1MC5 LINE L1 7187 7442 -519 1297 140 5 19 chr6 30536116 30536330 -158743224 + AluJo SINE Alu 1 211 -101 845 208 0 7 chr6 30536333 30536560 -158742994 + AluJb SINE Alu 145 312 0 4521 128 108 116 chr6 30538306 30539722 -158739832 - pTR5 LTR ERV1 0 2438 743 417 252 100 56 chr6 30539723 30539973 -158739581 + L1MC5 LINE L1 7668 7928 -33 192 305 85 0 chr6 30540501 30540583 -158738971 + L2 LINE L2 3184 3272 0 469 226 73 0 chr6 30541165 30541289 -158738265 + L1MC4a LINE L1 5410 5542 -2266 276 277 143 29 chr6 30541352 30541590 -158737964 + L1MC4a LINE L1 5805 6069 -1739 244 329 192 31 chr6 30541723 30542109 -158737445 + L2 LINE L2 1959 2406 -908 368 218 51 0 chr6 30542130 30542208 -158737346 + MER20B DNA MER1_type 56 137 -646 323 336 130 14 chr6 30542245 30542522 -158737032 + L2 LINE L2 2422 2730 -584 215 232 89 57 chr6 30543032 30543163 -158736391 + MIR SINE MIR 40 179 -29 420 181 14 0 chr6 30543403 30543475 -158736079 + MLT1F1 LTR MaLR 137 209 -358 275 164 137 41 chr6 30544014 30544087 -158735467 + LTR33 LTR ERVL 12 91 -430 3549 118 34 21 chr6 30544093 30544627 -158734927 - MER34 LTR ERV1 -1 541 1 1440 218 137 24 chr6 30544697 30545114 -158734440 + MLT1D LTR MaLR 42 505 0 22 0 0 0 chr6 30545813 30545835 -158733719 + AT_rich Low_complexity Low_complexity 1 22 0 1596 170 44 65 chr6 30546149 30546561 -158732993 - LTR52 LTR ERVL -7 414 12 366 228 133 33 chr6 30546913 30546992 -158732562 + L2 LINE L2 2931 3001 -312 1736 251 78 42 chr6 30546992 30547565 -158731989 + MLT1G1 LTR MaLR 1 594 -1 366 228 133 33 chr6 30547565 30547665 -158731889 + L2 LINE L2 3001 3128 -185 3135 146 43 2 chr6 30547665 30548173 -158731381 - L1MB4 LINE L1 0 6180 5652 854 129 35 6 chr6 30548173 30548343 -158731211 + CT-rich Low_complexity Low_complexity 4 178 0 998 143 0 0 chr6 30548346 30548493 -158731061 - FRAM SINE Alu -7 169 23 5063 195 50 15 chr6 30548495 30550009 -158729545 - L1MB4 LINE L1 -513 5667 4113 647 233 63 30 chr6 30550031 30550275 -158729279 - MER54A LTR ERVL -219 245 80 1369 218 17 70 chr6 30550326 30550498 -158729056 - L1MB4 LINE L1 -2028 4118 3939 2143 108 37 0 chr6 30550498 30550794 -158728760 - AluSx SINE Alu -5 307 1 1369 218 17 70 chr6 30550794 30551024 -158728530 - L1MB4 LINE L1 -2207 3939 3737 181 250 192 29 chr6 30551024 30551128 -158728426 + L2 LINE L2 3121 3241 -72 2440 200 113 41 chr6 30551419 30552003 -158727551 + MLT1E2 LTR MaLR 1 626 0 200 289 89 56 chr6 30552784 30552874 -158726680 - L2 LINE L2 -964 2350 2258 330 308 77 0 chr6 30553376 30553467 -158726087 + MER5A DNA MER1_type 8 105 -84 3936 150 89 11 chr6 30553559 30554213 -158725341 + MER44D DNA MER2_type 1 705 0 221 310 70 0 chr6 30554667 30554738 -158724816 - MIR SINE MIR -139 123 48 2496 58 0 6 chr6 30555052 30555364 -158724190 + AluY SINE Alu 1 310 -1 408 284 95 70 chr6 30555506 30555549 -158724005 + MIR SINE MIR 14 54 -208 1650 179 30 3 chr6 30555549 30555845 -158723709 - AluJb SINE Alu -8 304 1 408 284 95 70 chr6 30555845 30556044 -158723510 + MIR SINE MIR 54 262 0 1607 141 94 4 chr6 30556668 30556924 -158722630 + AluJo SINE Alu 1 279 -33 385 199 14 14 chr6 30556925 30557071 -158722483 + GA-rich Low_complexity Low_complexity 1 146 0 1034 96 13 0 chr6 30557086 30557242 -158722312 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 4081 267 93 43 chr6 30557471 30559183 -158720371 + L2 LINE L2 316 2113 -1201 344 185 46 0 chr6 30559190 30559255 -158720299 + L2 LINE L2 2270 2337 -977 1619 228 39 5 chr6 30559277 30559693 -158719861 + L1ME3A LINE L1 5486 5915 -255 1659 184 68 26 chr6 30559693 30560073 -158719481 + MSTD LTR MaLR 1 396 0 4462 241 96 32 chr6 30560080 30561193 -158718361 + MSTD-int LTR MaLR 255 1476 -259 1554 103 0 0 chr6 30561193 30561387 -158718167 + AluSq SINE Alu 1 194 -119 4462 241 96 32 chr6 30561387 30561665 -158717889 + MSTD-int LTR MaLR 1476 1735 0 873 193 97 78 chr6 30561667 30561761 -158717793 + MSTD LTR MaLR 3 94 -302 2422 100 0 0 chr6 30561761 30562072 -158717482 + AluSq SINE Alu 1 311 -2 873 193 97 78 chr6 30562072 30562246 -158717308 + MSTD LTR MaLR 94 276 -120 283 287 47 78 chr6 30562266 30562395 -158717159 + L1ME3A LINE L1 5968 6092 -78 1431 285 112 19 chr6 30562429 30563096 -158716458 + L2 LINE L2 2335 3052 -261 1871 143 13 17 chr6 30563802 30564102 -158715452 + AluJo SINE Alu 1 299 -13 356 203 80 116 chr6 30564507 30564616 -158714938 - MER5B DNA MER1_type -33 145 40 1563 172 57 25 chr6 30564616 30564970 -158714584 + MLT1A1 LTR MaLR 1 365 0 356 203 80 116 chr6 30564970 30564998 -158714556 - MER5B DNA MER1_type -138 40 13 281 340 72 0 chr6 30565374 30565471 -158714083 - MIR3 SINE MIR -36 172 69 4002 180 96 30 chr6 30565473 30566466 -158713088 - MER52A LTR ERV1 -418 1337 217 1944 133 127 8 chr6 30566464 30566826 -158712728 + MSTA LTR MaLR 22 426 -2 * 304 225 44 148 chr6 30566827 30567009 -158712545 + L2 LINE L2 3148 3310 -3 300 303 30 26 chr6 30567196 30567430 -158712124 - L1MEc LINE L1 -4320 2076 1842 1757 183 6 6 chr6 30567442 30567753 -158711801 + AluSx SINE Alu 1 311 -1 755 343 28 71 chr6 30567914 30568607 -158710947 + L2 LINE L2 2412 3065 -207 2297 107 0 0 chr6 30568607 30568897 -158710657 - AluSx SINE Alu -22 290 1 755 343 28 71 chr6 30568897 30569086 -158710468 + L2 LINE L2 3065 3260 -12 768 248 119 0 chr6 30569683 30569893 -158709661 - MIR SINE MIR -10 252 18 2059 98 7 59 chr6 30569971 30570278 -158709276 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr6 30570402 30570423 -158709131 + AT_rich Low_complexity Low_complexity 1 21 0 1550 150 139 4 chr6 30570445 30570718 -158708836 - AluJb SINE Alu -1 311 2 197 377 29 0 chr6 30571169 30571238 -158708316 + MIR SINE MIR 3 73 -189 1612 99 0 5 chr6 30572017 30572228 -158707326 + AluSp SINE Alu 88 297 -16 231 278 243 6 chr6 30572396 30572565 -158706989 + MIR SINE MIR 50 258 -4 215 77 0 26 chr6 30572853 30572892 -158706662 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 479 261 83 57 chr6 30573014 30573244 -158706310 + HAL1 LINE L1 528 763 -1744 620 298 0 18 chr6 30576135 30576303 -158703251 + MIR3 SINE MIR 10 174 -34 355 230 86 29 chr6 30577216 30577355 -158702199 + L1ME3A LINE L1 4300 4446 -1700 378 313 28 0 chr6 30578130 30578274 -158701280 + L1ME LINE L1 5550 5697 -424 608 153 125 0 chr6 30578299 30578443 -158701111 - L1MA4 LINE L1 -20 6982 6821 3369 128 73 59 chr6 30578443 30579184 -158700370 - Tigger3(Golem) DNA MER2_type -1 3028 2278 583 196 0 0 chr6 30579175 30579282 -158700272 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 12949 173 37 14 chr6 30579282 30581292 -158698262 - L1MA4 LINE L1 -178 6824 4680 3108 103 64 93 chr6 30581292 30581914 -158697640 - LTR14B LTR ERVK 0 608 5 12949 173 37 14 chr6 30581914 30583536 -158696018 - L1MA4 LINE L1 -2322 4680 3098 8879 197 68 83 chr6 30583540 30584525 -158695029 - L1MA4 LINE L1 -3984 2865 1867 2313 114 3 0 chr6 30584525 30584824 -158694730 - AluSg SINE Alu -10 300 1 8879 197 68 83 chr6 30584824 30586745 -158692809 - L1MA4 LINE L1 -4982 1867 1 1815 168 0 43 chr6 30586754 30587076 -158692478 - AluJb SINE Alu -4 308 1 30 45 0 0 chr6 30587185 30587229 -158692325 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr6 30587264 30587289 -158692265 + AT_rich Low_complexity Low_complexity 1 25 0 323 158 49 49 chr6 30588155 30588237 -158691317 + L1MCa LINE L1 1995 2076 -4350 1849 213 5 11 chr6 30588322 30588689 -158690865 + MLT1A1 LTR MaLR 1 365 0 919 190 0 13 chr6 30589519 30589677 -158689877 + AluJb SINE Alu 1 156 -156 2296 98 0 0 chr6 30590276 30590571 -158688983 + AluSg SINE Alu 1 295 -15 390 277 102 7 chr6 30590583 30590720 -158688834 + MIR SINE MIR 61 210 -52 22 56 0 0 chr6 30590735 30590771 -158688783 + AT_rich Low_complexity Low_complexity 1 36 0 2078 121 0 13 chr6 30590773 30591078 -158688476 + AluSq SINE Alu 1 301 -12 572 258 57 18 chr6 30591098 30591381 -158688173 + L1ME3A LINE L1 4517 4810 -1336 2226 96 0 0 chr6 30591672 30592007 -158687547 + AluSc SINE Alu 1 335 0 254 253 70 21 chr6 30592028 30592208 -158687346 + L1ME3A LINE L1 5188 5374 -772 2360 69 3 7 chr6 30592231 30592535 -158687019 + AluY SINE Alu 1 303 -8 815 263 53 88 chr6 30592535 30593081 -158686473 - MLT1G1 LTR MaLR -1 594 1 1008 261 122 30 chr6 30593093 30593216 -158686338 + L1ME3A LINE L1 5403 5513 -657 2282 49 39 0 chr6 30593216 30593500 -158686054 - AluY SINE Alu -16 295 1 1008 261 122 30 chr6 30593500 30593878 -158685676 + L1ME3A LINE L1 5513 5950 -220 2222 121 0 0 chr6 30593938 30594244 -158685310 + AluSx SINE Alu 1 306 -6 285 270 0 0 chr6 30594462 30594536 -158685018 + L1MC4a LINE L1 5824 5897 -1911 327 323 141 5 chr6 30594544 30594742 -158684812 + L1MC4a LINE L1 5955 6179 -1629 1336 263 198 28 chr6 30595193 30596076 -158683478 - L2 LINE L2 -3 3310 2260 2156 118 0 20 chr6 30596076 30596381 -158683173 + AluSx SINE Alu 1 299 -13 1336 263 198 28 chr6 30596381 30596459 -158683095 - L2 LINE L2 -1053 2260 2197 357 289 67 47 chr6 30596594 30596743 -158682811 - L2 LINE L2 -210 3062 2911 351 255 191 13 chr6 30596759 30596916 -158682638 + MER69 DNA AcHobo 167 351 -875 327 194 0 15 chr6 30597496 30597563 -158681991 + tRNA-Met-i tRNA tRNA 1 66 -9 748 233 176 17 chr6 30597871 30598331 -158681223 + Charlie2 DNA MER1_type 2296 2828 -34 2334 65 6 46 chr6 30598505 30598828 -158680726 - AluSx SINE Alu -2 310 1 621 66 0 0 chr6 30599199 30599275 -158680279 + tRNA-Lys-AAA tRNA tRNA 1 76 0 2061 110 0 7 chr6 30599384 30599676 -158679878 - AluSx SINE Alu -22 290 1 419 136 23 0 chr6 30600247 30600335 -158679219 + L1MA5 LINE L1 6204 6293 -7 1774 174 62 30 chr6 30600354 30600792 -158678762 - Charlie1 DNA MER1_type -725 2036 1585 650 0 0 0 chr6 30601205 30601277 -158678277 + tRNA-Met-i tRNA tRNA 1 72 -3 231 88 0 0 chr6 30601883 30601917 -158677637 + (A)n Simple_repeat Simple_repeat 1 34 0 1988 154 3 0 chr6 30602196 30602494 -158677060 + AluSq SINE Alu 1 299 -14 989 221 113 7 chr6 30602700 30603123 -158676431 + MLT1F LTR MaLR 3 542 0 1151 271 57 25 chr6 30603609 30604122 -158675432 - L1ME3A LINE L1 -13 6157 5629 649 313 61 14 chr6 30604120 30604711 -158674843 - L1ME3A LINE L1 -1116 5030 4412 * 426 206 30 6 chr6 30604752 30604869 -158674685 - L1ME3A LINE L1 -5 6165 6051 1986 156 7 0 chr6 30604949 30605244 -158674310 + AluSx SINE Alu 1 297 -15 782 270 36 12 chr6 30605551 30605884 -158673670 - L1ME3A LINE L1 -2502 3644 3304 2139 106 3 0 chr6 30605888 30606214 -158673340 - AluSp SINE Alu 0 327 1 481 212 45 45 chr6 30606216 30606461 -158673093 - L1ME3A LINE L1 -2789 3357 3113 3460 179 4 35 chr6 30606560 30607294 -158672260 - MER49 LTR ERV1 0 923 213 216 0 0 0 chr6 30607294 30607318 -158672236 + (TC)n Simple_repeat Simple_repeat 1 24 0 1063 130 31 0 chr6 30607318 30607479 -158672075 - AluSg/x SINE Alu -14 298 133 716 187 0 0 chr6 30607479 30607602 -158671952 - MER49 LTR ERV1 -701 222 100 29 0 0 0 chr6 30608190 30608219 -158671335 + AT_rich Low_complexity Low_complexity 1 29 0 629 143 18 0 chr6 30608271 30608383 -158671171 - AluJb SINE Alu 0 312 199 318 141 0 0 chr6 30610295 30610352 -158669202 + MLT2C1 LTR ERVL 350 397 0 2929 226 28 44 chr6 30610352 30611200 -158668354 + L1ME2 LINE L1 608 1442 -5100 2112 112 7 0 chr6 30611200 30611485 -158668069 + AluSx SINE Alu 15 301 -11 754 209 70 10 chr6 30611486 30611687 -158667867 + L1ME2 LINE L1 5559 5771 -873 510 227 140 58 chr6 30611700 30611734 -158667820 + L1ME2 LINE L1 6353 6383 -279 2114 128 26 0 chr6 30611734 30612038 -158667516 + AluSx SINE Alu 1 312 0 510 227 140 58 chr6 30612038 30612221 -158667333 + L1ME2 LINE L1 6383 6600 -62 194 0 39 0 chr6 30612221 30612247 -158667307 + (TG)n Simple_repeat Simple_repeat 2 28 0 510 227 140 58 chr6 30612247 30612306 -158667248 + L1ME2 LINE L1 6600 6653 -9 24 0 0 0 chr6 30612944 30612968 -158666586 + AT_rich Low_complexity Low_complexity 1 24 0 1866 97 0 4 chr6 30613029 30613277 -158666277 + AluSx SINE Alu 63 309 -3 22 80 0 0 chr6 30613294 30613344 -158666210 + AT_rich Low_complexity Low_complexity 1 50 0 224 286 0 0 chr6 30613390 30613453 -158666101 + A-rich Low_complexity Low_complexity 2 64 0 2623 43 0 0 chr6 30613479 30613778 -158665776 + AluY SINE Alu 1 299 -12 780 241 103 5 chr6 30614388 30614612 -158664942 - MIR SINE MIR -5 257 12 203 325 0 0 chr6 30614615 30614692 -158664862 + A-rich Low_complexity Low_complexity 1 77 0 669 227 0 15 chr6 30614796 30614928 -158664626 - MER45A DNA AcHobo -4 174 45 1145 188 420 2 chr6 30615962 30616495 -158663059 + LTR50 LTR ERVL 40 795 0 616 284 51 37 chr6 30616527 30616823 -158662731 - L1ME3A LINE L1 -224 6015 5716 1737 197 9 6 chr6 30616842 30617187 -158662367 - L1ME3A LINE L1 -1111 5104 4759 7100 236 50 22 chr6 30617200 30619537 -158660017 - L1MEc LINE L1 -2133 4082 1734 1869 256 49 13 chr6 30619554 30620290 -158659264 - L1M4c LINE L1 -4437 2126 1227 3026 141 57 101 chr6 30620304 30621173 -158658381 - L1MC2 LINE L1 -360 5984 5163 1832 196 23 53 chr6 30625562 30625996 -158653558 - L1ME1 LINE L1 -175 5991 5571 451 307 16 0 chr6 30626005 30626132 -158653422 - MIR SINE MIR -87 175 47 4227 132 30 80 chr6 30626132 30626968 -158652586 + L1MA7 LINE L1 5496 6289 -2 212 174 0 87 chr6 30626995 30627041 -158652513 - MIR SINE MIR -211 51 10 219 272 246 0 chr6 30627118 30627232 -158652322 + MIR SINE MIR 92 233 -29 634 200 186 14 chr6 30627617 30627827 -158651727 - MER33 DNA MER1_type -23 301 56 1355 153 33 0 chr6 30627827 30628042 -158651512 - AluJb SINE Alu -4 308 87 278 227 76 0 chr6 30628046 30628112 -158651442 - MER3 DNA MER1_type -98 111 41 2600 40 0 0 chr6 30628680 30628981 -158650573 + AluY SINE Alu 1 301 -10 224 214 18 18 chr6 30629517 30629573 -158649981 + CT-rich Low_complexity Low_complexity 2 57 0 860 224 61 55 chr6 30629578 30629890 -158649664 - L1ME3 LINE L1 -4 6158 5845 1644 138 6 77 chr6 30629908 30630242 -158649312 + AluJb SINE Alu 1 312 0 230 234 62 0 chr6 30630272 30630336 -158649218 - L1ME3 LINE L1 -2158 5837 5770 563 84 0 0 chr6 30630402 30630473 -158649081 + tRNA-Met-i tRNA tRNA 2 72 -3 971 214 0 0 chr6 30630810 30630978 -158648576 + MER2 DNA MER2_type 1 168 -177 260 98 0 0 chr6 30630979 30631020 -158648534 + Charlie3 DNA MER1_type 1 41 -2669 * 529 76 0 0 chr6 30631018 30631084 -158648470 + Charlie3 DNA MER1_type 2637 2702 -8 884 152 73 6 chr6 30631093 30631257 -158648297 + MER2 DNA MER2_type 171 345 0 893 140 53 41 chr6 30631606 30631647 -158647907 - AluJo SINE Alu -139 173 134 2468 70 3 0 chr6 30631647 30631947 -158647607 - AluSq SINE Alu -12 301 1 893 140 53 41 chr6 30631947 30632076 -158647478 - AluJo SINE Alu -178 134 1 625 240 159 35 chr6 30632359 30632617 -158646937 + L1MC4a LINE L1 5739 6028 -1780 893 202 179 18 chr6 30632627 30632850 -158646704 + AluY SINE Alu 2 260 -51 298 298 10 87 chr6 30632929 30633137 -158646417 + L1MC4a LINE L1 6348 6539 -1269 189 0 0 0 chr6 30633137 30633158 -158646396 + (A)n Simple_repeat Simple_repeat 1 21 0 2219 86 3 20 chr6 30633194 30633496 -158646058 + AluSp SINE Alu 1 297 -16 3383 248 65 52 chr6 30633498 30634010 -158645544 + L1MC4 LINE L1 6586 7090 -952 2214 105 0 25 chr6 30634010 30634325 -158645229 - AluSg SINE Alu -3 307 1 3383 248 65 52 chr6 30634325 30635241 -158644313 + L1MC4 LINE L1 7090 8032 -10 2165 106 3 3 chr6 30635260 30635563 -158643991 + AluSx SINE Alu 1 303 -9 352 221 76 15 chr6 30635584 30635715 -158643839 - L1MC5 LINE L1 -68 7893 7755 750 24 0 0 chr6 30636184 30636266 -158643288 - tRNA-Ser-AGC tRNA tRNA -3 82 1 1099 214 78 43 chr6 30636743 30637116 -158642438 - Charlie2 DNA MER1_type -318 2544 2159 * 1224 220 90 51 chr6 30637115 30637547 -158642007 - Charlie2b DNA MER1_type -1515 1267 819 659 42 0 0 chr6 30638757 30638829 -158640725 - tRNA-Gln-CAG tRNA tRNA -3 72 1 316 294 34 17 chr6 30639178 30639297 -158640257 - MIR SINE MIR -26 236 116 303 49 0 0 chr6 30639705 30639746 -158639808 + (CA)n Simple_repeat Simple_repeat 2 42 0 204 40 0 0 chr6 30640134 30640159 -158639395 + (GAA)n Simple_repeat Simple_repeat 2 26 0 554 82 0 0 chr6 30640297 30640370 -158639184 - tRNA-Ile-ATT tRNA tRNA -4 73 1 258 285 77 50 chr6 30640995 30641216 -158638338 - L1MC4a LINE L1 -1790 6018 5792 573 66 0 26 chr6 30641224 30641300 -158638254 + L1PA7 LINE L1 6077 6150 -4 2121 128 3 0 chr6 30641316 30641620 -158637934 + AluSx SINE Alu 1 305 -7 184 189 156 90 chr6 30642095 30642217 -158637337 - L2 LINE L2 -316 2956 2827 316 353 0 8 chr6 30642367 30642489 -158637065 - L2 LINE L2 -515 2799 2679 612 82 0 0 chr6 30643563 30643636 -158635918 - tRNA-Val-GTG tRNA tRNA -3 73 1 381 349 96 65 chr6 30644527 30644945 -158634609 - L2 LINE L2 -6 3266 2836 204 125 0 0 chr6 30646347 30646379 -158633175 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 417 251 79 23 chr6 30646442 30646657 -158632897 + L1M4 LINE L1 5001 5227 -919 2048 138 7 0 chr6 30646839 30647171 -158632383 - AluSq SINE Alu 0 334 1 2165 81 11 0 chr6 30647267 30647540 -158632014 - AluSg SINE Alu -30 280 5 4212 48 21 0 chr6 30648677 30649157 -158630397 - LTR2B LTR ERV1 0 490 1 871 108 8 0 chr6 30649774 30649903 -158629651 + AluSp/q SINE Alu 172 301 -12 587 107 0 0 chr6 30650102 30650177 -158629377 - tRNA-Ile-ATT tRNA tRNA -2 75 1 2349 65 10 3 chr6 30650243 30650534 -158629020 - AluSp SINE Alu -20 293 1 7681 98 23 7 chr6 30650534 30651597 -158627957 + HSMAR1 DNA Mariner 208 1287 0 306 0 0 0 chr6 30652031 30652065 -158627489 + (CA)n Simple_repeat Simple_repeat 2 35 0 271 203 40 40 chr6 30652412 30652589 -158626965 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 938 151 102 15 chr6 30652781 30652828 -158626726 - L1M2 LINE L1 -525 5775 5734 1480 155 83 35 chr6 30652828 30653118 -158626436 + AluSg SINE Alu 1 304 -6 938 151 102 15 chr6 30653118 30653276 -158626278 - L1M2 LINE L1 -566 5734 5552 893 179 20 20 chr6 30653265 30653460 -158626094 - L1M2 LINE L1 -2567 3579 3385 * 643 55 0 0 chr6 30653919 30653992 -158625562 + tRNA-Val-GTG tRNA tRNA 1 73 -3 216 0 0 0 chr6 30654734 30654758 -158624796 + (T)n Simple_repeat Simple_repeat 1 24 0 717 314 18 13 chr6 30654996 30655222 -158624332 + LTR16A LTR ERVL 71 297 -153 2709 36 0 0 chr6 30655312 30655619 -158623935 - AluY SINE Alu -4 307 1 817 340 64 14 chr6 30655650 30656235 -158623319 + L2 LINE L2 2658 3274 -39 2137 110 0 26 chr6 30656290 30656600 -158622954 + AluSx SINE Alu 1 302 -10 240 343 10 10 chr6 30656601 30656703 -158622851 + L2 LINE L2 2698 2799 -515 2319 88 0 0 chr6 30656759 30657065 -158622489 - AluSx SINE Alu -6 306 1 181 171 24 0 chr6 30657169 30657210 -158622344 + L2 LINE L2 2830 2871 -401 2116 86 36 13 chr6 30657521 30657824 -158621730 + AluSq SINE Alu 1 310 -3 228 337 12 12 chr6 30657884 30657967 -158621587 + L1MC4a LINE L1 5550 5632 -2176 340 273 41 35 chr6 30658061 30658233 -158621321 + L1MC4a LINE L1 5770 5942 -1866 38 0 0 0 chr6 30658744 30658782 -158620772 + AT_rich Low_complexity Low_complexity 1 38 0 679 27 0 0 chr6 30658977 30659052 -158620502 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 209 77 51 0 chr6 30659625 30659664 -158619890 + T-rich Low_complexity Low_complexity 2 42 0 628 80 0 0 chr6 30660227 30660302 -158619252 - tRNA-Ile-ATT tRNA tRNA -2 75 1 1014 291 50 48 chr6 30660457 30660917 -158618637 - L1MEc LINE L1 -5894 502 42 263 173 109 36 chr6 30662083 30662193 -158617361 - MER113 DNA MER1_type? -282 239 122 2048 76 7 35 chr6 30662272 30662680 -158616874 + AluSg SINE Alu 1 400 0 2630 48 0 6 chr6 30663107 30663418 -158616136 - AluY SINE Alu -2 309 1 481 42 0 106 chr6 30663622 30663811 -158615743 + (TA)n Simple_repeat Simple_repeat 2 170 0 244 132 0 73 chr6 30663822 30663890 -158615664 + (TA)n Simple_repeat Simple_repeat 1 63 0 2046 131 3 0 chr6 30664166 30664471 -158615083 - AluSq SINE Alu -7 306 1 234 62 0 0 chr6 30664863 30664895 -158614659 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 243 0 0 0 chr6 30665802 30665829 -158613725 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 297 275 11 0 chr6 30666261 30666352 -158613202 + L1ME LINE L1 5710 5801 -320 207 88 0 0 chr6 30666633 30666667 -158612887 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2129 95 0 3 chr6 30666746 30667029 -158612525 + AluSx SINE Alu 1 282 -30 387 0 0 0 chr6 30667032 30667075 -158612479 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3249 146 93 30 chr6 30667493 30667822 -158611732 - L1MB3 LINE L1 -24 6159 5852 2091 109 20 16 chr6 30667822 30668125 -158611429 - AluSp SINE Alu -9 304 1 3249 146 93 30 chr6 30668125 30668326 -158611228 - L1MB3 LINE L1 -331 5852 5665 2080 118 13 10 chr6 30668326 30668630 -158610924 + AluSx SINE Alu 1 305 -7 3249 146 93 30 chr6 30668630 30668761 -158610793 - L1MB3 LINE L1 -518 5665 5455 1087 233 25 13 chr6 30668774 30669091 -158610463 + L1ME1 LINE L1 4779 5099 -1047 1987 219 37 39 chr6 30669106 30669291 -158610263 + L1ME1 LINE L1 5476 5660 -506 1658 202 97 13 chr6 30669291 30669634 -158609920 + MLT2D LTR ERVL 1 381 -33 357 24 0 0 chr6 30669634 30669676 -158609878 + (CA)n Simple_repeat Simple_repeat 2 43 0 1658 202 97 13 chr6 30669676 30669714 -158609840 + MLT2D LTR ERVL 381 414 0 1987 219 37 39 chr6 30669714 30670072 -158609482 + L1ME1 LINE L1 5660 6018 -148 2050 167 120 5 chr6 30670072 30670292 -158609262 - MLT1D LTR MaLR 0 505 312 2068 133 0 10 chr6 30670292 30670592 -158608962 - AluSx SINE Alu -15 297 1 2050 167 120 5 chr6 30670592 30670779 -158608775 - MLT1D LTR MaLR -193 312 51 571 211 18 0 chr6 30670779 30670893 -158608661 + L1ME1 LINE L1 6005 6120 -46 1959 149 0 7 chr6 30671404 30671705 -158607849 + AluSx SINE Alu 5 303 -9 2271 111 0 0 chr6 30671869 30672166 -158607388 - AluSx SINE Alu -11 301 5 1957 93 28 75 chr6 30672803 30673124 -158606430 - AluSq SINE Alu -7 306 1 416 158 0 13 chr6 30673255 30673331 -158606223 - tRNA-Ile-ATT tRNA tRNA -2 75 1 1951 75 8 4 chr6 30673977 30674231 -158605323 - AluSq SINE Alu -1 312 58 2155 88 17 7 chr6 30674514 30674808 -158604746 + AluSg SINE Alu 1 297 -13 324 0 0 0 chr6 30674878 30674914 -158604640 + (TG)n Simple_repeat Simple_repeat 2 37 0 2220 111 7 0 chr6 30675295 30675592 -158603962 - AluSq SINE Alu -14 299 1 404 277 142 19 chr6 30675711 30675866 -158603688 + L1M4b LINE L1 99 272 -6587 309 315 61 44 chr6 30675989 30676228 -158603326 + L1M4b LINE L1 640 1115 -5744 2540 186 72 14 chr6 30676490 30677001 -158602553 + MER89 LTR ERV1 1 541 -18 1056 191 46 77 chr6 30677001 30677325 -158602229 + MLT1C LTR MaLR 1 314 -153 346 260 18 41 chr6 30677354 30677523 -158602031 + (TCTCTG)n Simple_repeat Simple_repeat 2 166 0 373 215 25 3 chr6 30677545 30677633 -158601921 + MLT1C LTR MaLR 305 389 -78 317 194 0 0 chr6 30677637 30677699 -158601855 + L1ME3 LINE L1 5899 5960 -202 249 275 157 22 chr6 30677698 30677876 -158601678 + L1M4b LINE L1 3 204 -6655 * 321 242 34 34 chr6 30678065 30678214 -158601340 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 210 71 0 0 chr6 30678234 30678262 -158601292 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 413 239 11 58 chr6 30678338 30678526 -158601028 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 311 351 74 55 chr6 30679649 30679920 -158599634 - L2 LINE L2 -70 3202 2927 320 327 156 65 chr6 30680034 30680355 -158599199 - L2 LINE L2 -19 3253 2904 633 260 18 55 chr6 30680383 30680602 -158598952 - MIR SINE MIR 0 262 52 534 129 108 0 chr6 30680616 30680709 -158598845 - MER53 DNA DNA -84 105 3 503 231 105 0 chr6 30681653 30681796 -158597758 + MIR SINE MIR 73 230 -32 234 220 0 0 chr6 30681893 30681943 -158597611 - L2 LINE L2 -1 3271 3222 467 251 95 10 chr6 30682012 30682207 -158597347 - MIR SINE MIR -23 239 26 298 179 21 63 chr6 30684137 30684232 -158595322 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 584 278 102 75 chr6 30684346 30684786 -158594768 - L2 LINE L2 -301 3012 2566 210 279 22 34 chr6 30684794 30684973 -158594581 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 234 342 44 35 chr6 30685473 30685701 -158593853 + L2 LINE L2 3082 3311 -2 703 321 18 21 chr6 30687143 30687423 -158592131 + L2 LINE L2 2884 3162 -151 939 306 115 32 chr6 30687446 30688159 -158591395 + L2 LINE L2 2530 3296 -17 425 324 75 0 chr6 30688308 30688536 -158591018 - L2 LINE L2 -303 3010 2768 2282 91 0 3 chr6 30688551 30688847 -158590707 + AluSg SINE Alu 1 295 -15 776 197 72 0 chr6 30688907 30689059 -158590495 + FAM SINE Alu 4 166 -9 808 177 61 80 chr6 30689151 30689291 -158590263 + L1MC/D LINE L1 5284 5425 -827 198 0 0 0 chr6 30689291 30689313 -158590241 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2217 96 7 0 chr6 30689316 30689596 -158589958 - AluSx SINE Alu -30 282 1 808 177 61 80 chr6 30689596 30689711 -158589843 + L1MC/D LINE L1 5427 5576 -676 2609 213 13 13 chr6 30689723 30690356 -158589198 - L1MB7 LINE L1 0 6184 5552 2387 83 0 0 chr6 30691858 30692146 -158587408 + AluSc SINE Alu 2 289 -20 2388 168 37 56 chr6 30692371 30692890 -158586664 - LTR22 LTR ERVK 0 509 1 1872 95 0 20 chr6 30693337 30693590 -158585964 + AluSg SINE Alu 1 248 -62 317 263 0 12 chr6 30693590 30693670 -158585884 + Charlie2 DNA MER1_type 100 178 -2684 203 45 68 45 chr6 30693687 30693731 -158585823 + A-rich Low_complexity Low_complexity 1 45 0 964 271 80 28 chr6 30693852 30694354 -158585200 + Charlie2 DNA MER1_type 1862 2403 -459 2509 77 0 0 chr6 30694354 30694653 -158584901 + AluSg SINE Alu 1 299 -11 964 271 80 28 chr6 30694653 30694766 -158584788 + Charlie2 DNA MER1_type 2403 2509 -353 277 171 163 39 chr6 30694794 30694923 -158584631 + Charlie2 DNA MER1_type 2677 2821 -41 198 143 0 0 chr6 30696378 30696413 -158583141 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 677 0 0 0 chr6 30696617 30696692 -158582862 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 207 336 48 8 chr6 30697196 30697321 -158582233 + L2 LINE L2 3181 3310 -3 2501 52 7 0 chr6 30697890 30698180 -158581374 + AluSp SINE Alu 1 292 -21 250 129 32 0 chr6 30698181 30698243 -158581311 + (TA)n Simple_repeat Simple_repeat 1 64 0 247 170 0 19 chr6 30698251 30698304 -158581250 - L1MC4 LINE L1 -1339 6703 6652 2345 90 0 3 chr6 30698336 30698646 -158580908 + AluSc SINE Alu 1 309 0 643 41 0 0 chr6 30698680 30698753 -158580801 - tRNA-Val-GTT tRNA tRNA -3 73 1 222 174 0 0 chr6 30699344 30699390 -158580164 + (TA)n Simple_repeat Simple_repeat 2 47 0 372 242 15 76 chr6 30699610 30699742 -158579812 + L2 LINE L2 3190 3313 0 2910 12 0 3 chr6 30701008 30701327 -158578227 - AluYb8 SINE Alu 0 318 1 2321 101 0 10 chr6 30701372 30701679 -158577875 + AluSg SINE Alu 1 304 -6 438 322 82 18 chr6 30701709 30702115 -158577439 - L1ME LINE L1 -353 5817 5389 2250 117 0 0 chr6 30702184 30702491 -158577063 - AluSg SINE Alu -3 307 1 2363 80 0 3 chr6 30702697 30702996 -158576558 - AluSx SINE Alu -14 298 1 240 33 0 0 chr6 30703265 30703295 -158576259 + Alu SINE Alu 194 223 -80 284 162 30 45 chr6 30703626 30703704 -158575850 + tRNA-Ser-TCA tRNA tRNA 3 79 -6 2398 79 0 0 chr6 30704010 30704302 -158575252 + AluSq SINE Alu 18 309 -4 1072 129 0 0 chr6 30704304 30704459 -158575095 + AluSg/x SINE Alu 136 290 -22 286 299 0 0 chr6 30705087 30705154 -158574400 - L1MC/D LINE L1 -759 5600 5534 * 776 229 103 91 chr6 30705124 30705443 -158574111 - L1M3 LINE L1 -599 5584 5262 1957 81 81 8 chr6 30705465 30705725 -158573829 - AluSx SINE Alu -19 293 15 381 221 0 84 chr6 30705833 30705858 -158573696 + Tigger5 DNA MER2_type 2237 2263 -60 2344 54 3 44 chr6 30705858 30706173 -158573381 - AluY SINE Alu -9 302 1 381 221 0 84 chr6 30706173 30706242 -158573312 + Tigger5 DNA MER2_type 2263 2323 0 229 230 14 0 chr6 30706242 30706316 -158573238 - L1M3 LINE L1 -1807 4339 4265 1182 194 40 73 chr6 30706353 30706543 -158573011 - L1M3 LINE L1 -1865 4281 4109 2389 40 0 80 chr6 30706543 30706867 -158572687 + AluY SINE Alu 1 298 -13 1182 194 40 73 chr6 30706867 30707073 -158572481 - L1M3 LINE L1 -2037 4109 3898 651 191 0 0 chr6 30707073 30707188 -158572366 + MSTB2 LTR MaLR 343 457 0 293 206 32 16 chr6 30707409 30707472 -158572082 - L1MCc LINE L1 -5956 467 404 1073 127 97 2 chr6 30707472 30707715 -158571839 - MER2 DNA MER2_type -21 324 22 672 240 30 59 chr6 30707866 30708068 -158571486 - L1MCc LINE L1 -6137 286 92 2053 121 0 57 chr6 30708068 30708400 -158571154 - AluSq SINE Alu 0 313 1 672 240 30 59 chr6 30708400 30708468 -158571086 - L1MCc LINE L1 -6331 92 24 334 183 12 12 chr6 30708653 30708735 -158570819 + GA-rich Low_complexity Low_complexity 4 85 0 332 304 99 28 chr6 30708740 30708921 -158570633 + HAL1 LINE L1 99 292 -2215 1754 241 85 26 chr6 30709400 30709894 -158569660 - L1MDa LINE L1 -5987 553 31 1981 128 11 3 chr6 30709901 30710079 -158569475 - AluSx SINE Alu 0 309 127 207 0 0 0 chr6 30710079 30710102 -158569452 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1981 128 11 3 chr6 30710102 30710230 -158569324 - AluSx SINE Alu -182 127 1 1590 188 66 43 chr6 30710267 30710647 -158568907 + MLT1B LTR MaLR 1 390 0 229 196 22 0 chr6 30710680 30710726 -158568828 + GA-rich Low_complexity Low_complexity 4 50 0 216 0 0 0 chr6 30710896 30710920 -158568634 + (A)n Simple_repeat Simple_repeat 1 24 0 2492 76 3 0 chr6 30710923 30711226 -158568328 + AluSp SINE Alu 4 307 -6 2209 129 0 0 chr6 30711485 30711795 -158567759 + AluSq SINE Alu 1 310 -3 1992 138 0 25 chr6 30711816 30712135 -158567419 + AluSx SINE Alu 1 311 -1 581 227 31 25 chr6 30712302 30712465 -158567089 + LTR41 LTR ERVL 16 179 -594 1994 114 3 24 chr6 30712550 30712866 -158566688 + AluSp SINE Alu 4 313 0 2212 80 28 7 chr6 30713073 30713362 -158566192 - AluSq SINE Alu -18 295 1 238 214 0 0 chr6 30713679 30713721 -158565833 - tRNA-Thr-ACT tRNA tRNA -21 56 15 1847 121 22 4 chr6 30713816 30714089 -158565465 + AluSx SINE Alu 1 278 -34 306 0 0 0 chr6 30714089 30714123 -158565431 + (TC)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr6 30714122 30714148 -158565406 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 393 114 166 74 chr6 30714340 30714401 -158565153 - Charlie5 DNA MER1_type -38 2586 2532 610 244 0 8 chr6 30714401 30714532 -158565022 - FLAM_A SINE Alu -3 130 1 393 114 166 74 chr6 30714532 30714645 -158564909 - Charlie5 DNA MER1_type -92 2532 2396 417 204 0 0 chr6 30714780 30714868 -158564686 - L1MB5 LINE L1 -287 5887 5800 2297 104 0 0 chr6 30714869 30715166 -158564388 - AluSq SINE Alu -16 297 1 502 235 34 8 chr6 30715331 30715450 -158564104 - FLAM_A SINE Alu -10 123 2 187 286 45 45 chr6 30715753 30715865 -158563689 + MER5A DNA MER1_type 77 188 -1 1925 129 0 26 chr6 30716665 30716788 -158562766 + AluSx SINE Alu 9 134 -178 198 0 0 0 chr6 30716788 30716810 -158562744 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1925 129 0 26 chr6 30716810 30716997 -158562557 + AluSx SINE Alu 134 311 -1 1379 142 27 108 chr6 30717034 30717181 -158562373 + AluYb8 SINE Alu 1 158 -160 306 0 0 0 chr6 30717181 30717215 -158562339 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2155 87 0 0 chr6 30717219 30717496 -158562058 - AluSq SINE Alu -36 277 1 1379 142 27 108 chr6 30717496 30717675 -158561879 + AluYb8 SINE Alu 161 305 -13 1765 169 60 23 chr6 30717716 30718034 -158561520 - L1MB7 LINE L1 -19 6165 5860 199 0 65 0 chr6 30718034 30718065 -158561489 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2039 105 7 21 chr6 30718065 30718351 -158561203 - AluSx SINE Alu -30 282 1 1765 169 60 23 chr6 30718351 30718380 -158561174 - L1MB7 LINE L1 -323 5861 5804 2102 89 7 13 chr6 30718488 30718791 -158560763 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr6 30718971 30719001 -158560553 + AT_rich Low_complexity Low_complexity 1 30 0 643 27 0 0 chr6 30719016 30719089 -158560465 - tRNA-Arg-CGC tRNA tRNA -3 73 1 2350 75 0 7 chr6 30719157 30719462 -158560092 - AluSx SINE Alu -5 307 5 2258 84 19 10 chr6 30719780 30720089 -158559465 + AluSx SINE Alu 1 312 0 643 27 0 0 chr6 30720345 30720418 -158559136 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 2147 96 0 0 chr6 30720446 30720726 -158558828 - AluSq SINE Alu -33 280 1 180 0 0 0 chr6 30720726 30720746 -158558808 + (T)n Simple_repeat Simple_repeat 1 20 0 2255 92 3 3 chr6 30720783 30721078 -158558476 - AluSp SINE Alu -14 299 5 2258 93 13 13 chr6 30721408 30721721 -158557833 + AluSq SINE Alu 1 313 0 623 112 92 0 chr6 30721802 30721900 -158557654 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chr6 30722003 30722031 -158557523 + AT_rich Low_complexity Low_complexity 1 28 0 219 130 0 43 chr6 30722276 30722322 -158557232 + (TTTTTG)n Simple_repeat Simple_repeat 1 44 0 2433 52 0 26 chr6 30723069 30723377 -158556177 - AluY SINE Alu -11 300 1 1014 73 55 49 chr6 30723569 30723733 -158555821 - AluSg/x SINE Alu -10 299 135 325 89 0 0 chr6 30723733 30723778 -158555776 - Alu SINE Alu -257 45 1 1247 119 0 0 chr6 30723790 30723967 -158555587 - AluSg/x SINE Alu 0 310 134 524 105 0 0 chr6 30724330 30724406 -158555148 - tRNA-Ser-TCC tRNA tRNA -2 83 8 6058 248 45 40 chr6 30724510 30725306 -158554248 - ERVL LTR ERVL -1774 3751 2961 2403 42 29 29 chr6 30725306 30725617 -158553937 - AluY SINE Alu 0 311 1 6058 248 45 40 chr6 30725617 30725913 -158553641 - ERVL LTR ERVL -2564 2961 2668 1884 123 77 25 chr6 30725913 30726239 -158553315 + MER61A LTR ERV1 1 343 0 6058 248 45 40 chr6 30726239 30727269 -158552285 - ERVL LTR ERVL -2857 2668 1562 496 165 62 0 chr6 30727270 30727367 -158552187 - MLT1B LTR MaLR 0 390 288 628 41 0 0 chr6 30728101 30728174 -158551380 + tRNA-Val-GTG tRNA tRNA 1 73 -3 388 145 0 16 chr6 30728666 30728728 -158550826 + MER31A LTR ERV1 223 283 -202 2957 125 15 9 chr6 30728772 30729236 -158550318 - MER31A LTR ERV1 -18 467 1 634 113 0 57 chr6 30729236 30729336 -158550218 + MLT2D LTR ERVL 321 414 0 2175 121 0 10 chr6 30729438 30729745 -158549809 + AluSx SINE Alu 1 304 -8 181 263 221 0 chr6 30729937 30730032 -158549522 - L2 LINE L2 -56 3257 3142 1239 218 79 40 chr6 30730032 30730504 -158549050 + MER39 LTR ERV1 1 559 -6 2058 128 7 14 chr6 30730664 30730954 -158548600 + AluSx SINE Alu 1 288 -24 1750 177 30 7 chr6 30731276 30731581 -158547973 + AluJb SINE Alu 1 312 0 2084 119 3 0 chr6 30731963 30732258 -158547296 + AluSq SINE Alu 1 296 -17 2400 75 0 3 chr6 30732260 30732565 -158546989 + AluY SINE Alu 1 304 -7 803 222 57 84 chr6 30732569 30732694 -158546860 + L1M4 LINE L1 3670 3797 -2349 1872 167 44 37 chr6 30732694 30732871 -158546683 + MLT1B LTR MaLR 1 175 -215 1846 124 7 49 chr6 30732871 30733178 -158546376 + AluSx SINE Alu 1 294 -18 1872 167 44 37 chr6 30733178 30733383 -158546171 + MLT1B LTR MaLR 175 386 -4 803 222 57 84 chr6 30733383 30733417 -158546137 + L1M4 LINE L1 3797 3830 -2316 1869 144 0 35 chr6 30733417 30733730 -158545824 + AluSx SINE Alu 1 302 -10 803 222 57 84 chr6 30733730 30733938 -158545616 + L1M4 LINE L1 3830 4028 -2118 535 133 89 0 chr6 30733938 30734028 -158545526 + MER4A LTR ERV1 1 98 -566 1901 113 158 78 chr6 30734028 30734132 -158545422 + MER4A LTR ERV1 261 355 -309 2656 61 3 0 chr6 30734132 30734444 -158545110 - AluSp SINE Alu 0 313 1 1901 113 158 78 chr6 30734444 30734712 -158544842 + MER4A LTR ERV1 355 663 -1 2246 95 0 3 chr6 30734768 30735100 -158544454 + AluSp SINE Alu 2 332 0 1038 230 8 70 chr6 30735116 30735516 -158544038 + L1M4 LINE L1 4975 5349 -797 2268 105 30 0 chr6 30735524 30735828 -158543726 - AluSq SINE Alu 0 313 1 2122 147 0 0 chr6 30735838 30736144 -158543410 - AluSg SINE Alu -1 309 4 1996 129 10 16 chr6 30736146 30736456 -158543098 - AluSx SINE Alu -4 308 1 2043 128 3 3 chr6 30736633 30736931 -158542623 + AluSx SINE Alu 1 298 -14 302 322 70 0 chr6 30737408 30737551 -158542003 + L1MCc LINE L1 17 169 -6254 3865 108 4 21 chr6 30737982 30738540 -158541014 - LTR14 LTR ERVK 0 548 1 1865 129 7 11 chr6 30738548 30738828 -158540726 - HERVKC4 LTR ERVK -18 5244 4966 5305 156 43 37 chr6 30738828 30739829 -158539725 + LTR13 LTR ERVK 1 1007 0 945 145 6 13 chr6 30739863 30740022 -158539532 + LTR13 LTR ERVK 850 1007 0 34296 98 11 33 chr6 30740022 30742043 -158537511 - HERVKC4 LTR ERVK -291 4971 2908 1473 46 6 11 chr6 30742043 30742218 -158537336 + AluY SINE Alu 1 174 -137 34296 98 11 33 chr6 30742218 30742373 -158537181 - HERVKC4 LTR ERVK -2354 2908 2751 2465 61 0 13 chr6 30742373 30742685 -158536869 - AluY SINE Alu -3 308 1 34296 98 11 33 chr6 30742685 30742838 -158536716 - HERVKC4 LTR ERVK -2511 2751 2596 2335 87 0 3 chr6 30742838 30743137 -158536417 - AluY SINE Alu -13 298 1 2394 46 39 23 chr6 30743139 30743445 -158536109 - AluY SINE Alu 0 311 1 34296 98 11 33 chr6 30743445 30746191 -158533363 - HERVKC4 LTR ERVK -2667 2595 1 3830 104 13 20 chr6 30746191 30746741 -158532813 - LTR14 LTR ERVK 0 548 3 2099 108 7 7 chr6 30747035 30747330 -158532224 - AluY SINE Alu -11 300 6 1171 228 30 23 chr6 30747723 30748025 -158531529 - LTR10B LTR ERV1 -1 546 217 6596 270 52 32 chr6 30748104 30750273 -158529281 - HERVI LTR ERV1 0 6649 4437 11664 274 54 49 chr6 30750279 30755389 -158524165 - HERVI LTR ERV1 -2395 5390 188 1769 99 0 0 chr6 30755389 30755611 -158523943 - AluSg/x SINE Alu -10 300 79 11664 274 54 49 chr6 30755611 30755798 -158523756 - HERVI LTR ERV1 -7597 188 3 1262 191 42 4 chr6 30755800 30756036 -158523518 - LTR10B LTR ERV1 -3 544 300 29 0 0 0 chr6 30756847 30756876 -158522678 + AT_rich Low_complexity Low_complexity 1 29 0 677 0 0 0 chr6 30756973 30757048 -158522506 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 189 154 0 0 chr6 30757057 30757096 -158522458 + T-rich Low_complexity Low_complexity 1 39 0 207 100 0 0 chr6 30757193 30757223 -158522331 + (T)n Simple_repeat Simple_repeat 1 30 0 2403 103 0 0 chr6 30757380 30757692 -158521862 - AluSx SINE Alu 0 312 1 2877 16 0 0 chr6 30758261 30758572 -158520982 - AluYa5 SINE Alu 0 311 1 257 318 0 28 chr6 30758792 30758899 -158520655 + L2 LINE L2 3210 3313 0 1280 254 125 14 chr6 30758945 30759296 -158520258 + MLT1E2 LTR MaLR 235 624 -2 418 263 41 26 chr6 30759560 30759754 -158519800 - L1MC4a LINE L1 -1759 6049 5853 2266 89 0 20 chr6 30759816 30760119 -158519435 - AluSq SINE Alu -16 297 1 283 158 0 18 chr6 30760315 30760372 -158519182 - LTR37A LTR ERV1 0 426 371 467 167 0 0 chr6 30760383 30760479 -158519075 + L1MB5 LINE L1 4395 4490 -1656 1734 143 0 83 chr6 30760675 30761011 -158518543 + AluSx SINE Alu 3 310 -2 231 36 0 0 chr6 30761326 30761354 -158518200 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2395 74 3 3 chr6 30761367 30761665 -158517889 - AluSx SINE Alu -14 298 1 23 33 0 0 chr6 30761766 30761796 -158517758 + AT_rich Low_complexity Low_complexity 1 30 0 4603 197 36 21 chr6 30761979 30762017 -158517537 + L1MB5 LINE L1 4478 4514 -1660 1963 203 27 24 chr6 30762017 30762058 -158517496 - MLT2D LTR ERVL 0 414 375 330 26 0 0 chr6 30762058 30762097 -158517457 + (TG)n Simple_repeat Simple_repeat 2 40 0 1963 203 27 24 chr6 30762097 30762169 -158517385 - MLT2D LTR ERVL -39 375 305 2583 46 13 0 chr6 30762169 30762293 -158517261 + AluY SINE Alu 1 122 -189 231 36 0 0 chr6 30762293 30762321 -158517233 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2583 46 13 0 chr6 30762321 30762503 -158517051 + AluY SINE Alu 122 311 0 1963 203 27 24 chr6 30762503 30762801 -158516753 - MLT2D LTR ERVL -109 305 1 4603 197 36 21 chr6 30762801 30762967 -158516587 + L1MB5 LINE L1 4514 4676 -1498 2333 131 0 0 chr6 30762974 30763286 -158516268 + AluSx SINE Alu 1 312 0 4603 197 36 21 chr6 30763009 30763794 -158515760 + L1MB5 LINE L1 4676 5262 -912 1577 127 162 4 chr6 30763794 30764053 -158515501 + AluSg SINE Alu 1 300 0 4603 197 36 21 chr6 30764053 30764972 -158514582 + L1MB5 LINE L1 5262 6166 -8 877 207 141 27 chr6 30764978 30765141 -158514413 - LTR37A LTR ERV1 -54 372 229 2173 152 25 57 chr6 30765141 30765581 -158513973 - MSTB LTR MaLR 0 426 1 877 207 141 27 chr6 30765581 30765751 -158513803 - LTR37A LTR ERV1 -197 229 1 2122 224 53 82 chr6 30765825 30766509 -158513045 - MER31-int LTR ERV1 -736 4200 3543 1772 151 37 3 chr6 30766509 30766668 -158512886 + AluSx SINE Alu 1 153 -159 1879 83 4 8 chr6 30766668 30766922 -158512632 + AluSc SINE Alu 1 253 -56 1772 151 37 3 chr6 30766922 30767061 -158512493 + AluSx SINE Alu 153 309 -3 2122 224 53 82 chr6 30767061 30767200 -158512354 - MER31-int LTR ERV1 -1393 3543 3401 1737 170 0 38 chr6 30767337 30767654 -158511900 + AluJo SINE Alu 1 305 -7 548 207 13 45 chr6 30768102 30768283 -158511271 - MER31-int LTR ERV1 -1648 3288 3171 2217 106 0 0 chr6 30768317 30768600 -158510954 + AluSx SINE Alu 1 283 -29 1366 141 12 19 chr6 30768600 30768856 -158510698 - L1MC2 LINE L1 -334 6010 5757 2270 112 3 0 chr6 30768947 30769251 -158510303 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr6 30769396 30769417 -158510137 + AT_rich Low_complexity Low_complexity 1 21 0 2991 252 54 4 chr6 30769537 30770486 -158509068 - L1MC4 LINE L1 -188 7854 6859 1335 170 94 11 chr6 30770613 30770921 -158508633 + MER61B LTR ERV1 1 425 0 650 253 26 13 chr6 30771117 30771271 -158508283 + MIR SINE MIR 21 176 -86 180 320 77 0 chr6 30772985 30773063 -158506491 - MIR SINE MIR -63 145 62 195 355 0 0 chr6 30773535 30773611 -158505943 - MIR SINE MIR -108 154 79 237 266 142 0 chr6 30773926 30774039 -158505515 + LTR65 LTR ERV1 35 163 -506 191 384 95 26 chr6 30774390 30774960 -158504594 - L2 LINE L2 -534 2780 2172 376 267 0 0 chr6 30776346 30776436 -158503118 + L1MC/D LINE L1 5574 5663 -2145 22 0 0 0 chr6 30776687 30776709 -158502845 + AT_rich Low_complexity Low_complexity 1 22 0 201 162 0 0 chr6 30777383 30777420 -158502134 + GA-rich Low_complexity Low_complexity 4 40 0 2368 97 3 0 chr6 30777971 30778279 -158501275 + AluSg SINE Alu 1 309 -1 260 291 89 63 chr6 30779284 30779442 -158500112 + MIR SINE MIR 78 239 -23 2344 79 0 10 chr6 30779583 30779888 -158499666 + AluSq SINE Alu 1 302 -11 310 176 24 0 chr6 30780110 30780195 -158499359 + (CAT)n Simple_repeat Simple_repeat 3 89 0 1705 214 36 44 chr6 30780620 30781124 -158498430 - L1MA9 LINE L1 -38 6274 5775 267 31 0 0 chr6 30781134 30781151 -158498403 + (CA)n Simple_repeat Simple_repeat 1 49 0 267 31 0 0 chr6 30781151 30781183 -158498371 + (CA)n Simple_repeat Simple_repeat 2 33 0 2140 119 0 39 chr6 30781200 30781511 -158498043 - AluSx SINE Alu -11 301 3 426 225 0 0 chr6 30781615 30781704 -158497850 - L1MA9 LINE L1 -612 5700 5612 207 218 0 0 chr6 30781704 30781759 -158497795 + (TATG)n Simple_repeat Simple_repeat 2 56 0 626 14 0 0 chr6 30783596 30783668 -158495886 + tRNA-Pro-CCG tRNA tRNA 1 72 -3 35 78 0 0 chr6 30784843 30784920 -158494634 + AT_rich Low_complexity Low_complexity 1 77 0 353 353 31 24 chr6 30784992 30785247 -158494307 + HAL1 LINE L1 604 860 -1647 463 261 48 96 chr6 30785316 30785461 -158494093 + HAL1 LINE L1 1017 1145 -1362 3313 150 30 45 chr6 30785461 30786194 -158493360 + L1MC2 LINE L1 5622 6343 -1 463 261 48 96 chr6 30786194 30786320 -158493234 + HAL1 LINE L1 1145 1275 -1232 219 204 0 0 chr6 30786335 30786384 -158493170 + A-rich Low_complexity Low_complexity 3 51 0 1330 116 0 0 chr6 30786384 30786565 -158492989 + AluSg/x SINE Alu 128 308 -1 729 293 84 21 chr6 30786653 30786941 -158492613 + HAL1 LINE L1 1350 1683 -824 1738 33 0 19 chr6 30786941 30787153 -158492401 + AluY SINE Alu 96 303 -8 729 293 84 21 chr6 30787153 30787349 -158492205 + HAL1 LINE L1 1683 1865 -642 310 284 41 15 chr6 30787432 30787629 -158491925 + HAL1 LINE L1 2115 2316 -191 384 312 144 23 chr6 30787656 30788085 -158491469 - MLT1J LTR MaLR -30 481 1 305 242 118 33 chr6 30788093 30788246 -158491308 + HAL1 LINE L1 2338 2503 -4 723 12 0 0 chr6 30789160 30789242 -158490312 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 198 0 0 0 chr6 30789810 30789832 -158489722 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2018 88 17 7 chr6 30789857 30790151 -158489403 + AluSx SINE Alu 1 297 -15 4003 104 13 17 chr6 30790428 30791002 -158488552 + LTR43 LTR ERV1 1 574 -28 2050 130 7 0 chr6 30791002 30791301 -158488253 + AluSx SINE Alu 2 302 -10 4003 104 13 17 chr6 30791301 30791330 -158488224 + LTR43 LTR ERV1 574 602 0 1979 113 3 3 chr6 30791350 30791659 -158487895 - AluSx SINE Alu 0 309 1 22 88 0 0 chr6 30791662 30791719 -158487835 + AT_rich Low_complexity Low_complexity 1 57 0 671 91 42 54 chr6 30792227 30792642 -158486912 + (TTATA)n Simple_repeat Simple_repeat 1 410 0 376 107 39 51 chr6 30792645 30792823 -158486731 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 * 466 37 32 89 chr6 30792783 30792973 -158486581 + (TA)n Simple_repeat Simple_repeat 2 180 0 441 297 80 6 chr6 30793114 30793315 -158486239 - L1ME3A LINE L1 -224 5946 5762 1458 248 90 53 chr6 30793322 30793381 -158486173 - MLT1E LTR MaLR -8 585 530 2388 100 0 0 chr6 30793381 30793690 -158485864 + AluSc SINE Alu 1 309 0 1458 248 90 53 chr6 30793690 30794194 -158485360 - MLT1E LTR MaLR -63 530 1 640 281 101 40 chr6 30794282 30795198 -158484356 - L1ME3A LINE L1 -253 5917 4965 189 180 0 0 chr6 30795213 30795263 -158484291 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2140 123 0 7 chr6 30795310 30795611 -158483943 + AluSx SINE Alu 5 303 -9 495 238 85 56 chr6 30795618 30795959 -158483595 - L1ME3A LINE L1 -1230 4916 4566 2082 139 0 0 chr6 30795992 30796279 -158483275 + AluSx SINE Alu 1 287 -25 31 0 0 0 chr6 30796459 30796490 -158483064 + AT_rich Low_complexity Low_complexity 1 31 0 1292 161 14 5 chr6 30796737 30796954 -158482600 + MER20 DNA MER1_type 1 219 0 1664 199 28 14 chr6 30797536 30797893 -158481661 + MLT1A1 LTR MaLR 4 365 0 1814 112 0 24 chr6 30797916 30798167 -158481387 + AluSq SINE Alu 1 245 -68 403 320 104 14 chr6 30798429 30798651 -158480903 - MIR SINE MIR -20 242 1 639 182 123 12 chr6 30798863 30799033 -158480521 + MER53 DNA DNA 1 189 0 2303 85 3 38 chr6 30799100 30799417 -158480137 - AluSg SINE Alu -4 306 1 196 345 69 11 chr6 30800390 30800477 -158479077 - L2 LINE L2 -188 3084 2993 1155 150 5 5 chr6 30801648 30801835 -158477719 - U2 snRNA snRNA -1 187 1 1535 206 32 9 chr6 30801872 30802211 -158477343 - MER65C LTR ERV1 0 461 115 833 206 39 0 chr6 30802265 30802445 -158477109 - MER66B-int LTR ERV1 -1690 4986 4800 441 191 53 15 chr6 30802748 30802879 -158476675 - MER66B-int LTR ERV1 -2577 4021 3886 2485 81 0 0 chr6 30802888 30803195 -158476359 + AluY SINE Alu 1 307 -4 1199 172 24 97 chr6 30803195 30803350 -158476204 - MER66B-int LTR ERV1 -2512 4164 3999 2262 105 0 13 chr6 30803350 30803663 -158475891 - AluSg SINE Alu -1 309 1 1199 172 24 97 chr6 30803663 30803913 -158475641 - MER66B-int LTR ERV1 -2677 3999 2088 765 132 126 0 chr6 30803990 30804180 -158475374 - MER66B-int LTR ERV1 -6187 1933 1720 4385 217 77 20 chr6 30804185 30805588 -158473966 - MER66B-int LTR ERV1 -3839 2837 1305 274 200 62 0 chr6 30806231 30806296 -158473258 - MER66B-int LTR ERV1 -6410 266 198 291 184 0 0 chr6 30806391 30806440 -158473114 - MER66B LTR ERV1 -9 477 429 619 150 164 116 chr6 30806993 30807239 -158472315 - MER41B LTR ERV1 -182 443 210 2126 117 0 0 chr6 30807239 30807541 -158472013 - AluSx SINE Alu 0 302 1 1630 178 3 24 chr6 30807545 30807837 -158471717 - AluJb SINE Alu -18 294 9 619 150 164 116 chr6 30807837 30807946 -158471608 - MER41B LTR ERV1 -417 208 100 22 70 0 0 chr6 30808324 30808367 -158471187 + AT_rich Low_complexity Low_complexity 1 43 0 509 239 57 88 chr6 30808394 30808499 -158471055 - L1ME2 LINE L1 -11 6153 6046 2328 104 0 0 chr6 30808499 30808798 -158470756 + AluSx SINE Alu 2 300 -12 509 239 57 88 chr6 30808798 30808989 -158470565 - L1ME2 LINE L1 -118 6046 5866 1382 241 13 6 chr6 30809088 30809403 -158470151 + MLT1E LTR MaLR 277 593 0 1708 152 9 81 chr6 30809408 30809731 -158469823 + AluJo SINE Alu 1 300 -12 4826 218 60 35 chr6 30809744 30810605 -158468949 - L1ME2 LINE L1 -332 5834 4997 205 29 59 0 chr6 30810605 30810639 -158468915 + (TA)n Simple_repeat Simple_repeat 2 37 0 4826 218 60 35 chr6 30810639 30811653 -158467901 - L1ME2 LINE L1 -1169 4997 3888 2551 111 57 0 chr6 30811653 30812042 -158467512 + LTR57 LTR ERVL 1 411 0 4826 218 60 35 chr6 30812042 30812313 -158467241 - L1ME2 LINE L1 -2278 3888 3625 1022 220 5 0 chr6 30812326 30812526 -158467028 - MER58A DNA MER1_type -23 201 1 901 250 53 35 chr6 30812801 30813164 -158466390 + L1ME LINE L1 5283 5656 -506 2143 113 0 7 chr6 30813164 30813456 -158466098 + AluSc SINE Alu 1 290 -19 901 250 53 35 chr6 30813456 30813551 -158466003 + L1ME LINE L1 5656 5748 -414 21 36 0 0 chr6 30813783 30813811 -158465743 + AT_rich Low_complexity Low_complexity 1 28 0 1321 175 70 49 chr6 30813819 30814105 -158465449 + AluSp SINE Alu 2 293 -20 36 70 0 0 chr6 30814134 30814205 -158465349 + AT_rich Low_complexity Low_complexity 1 71 0 1495 182 24 0 chr6 30814655 30814908 -158464646 + AluJo SINE Alu 24 282 -30 1961 129 44 3 chr6 30815049 30815344 -158464210 + AluSx SINE Alu 1 307 -5 2285 89 3 0 chr6 30815704 30815996 -158463558 - AluSg SINE Alu -17 293 1 392 276 79 16 chr6 30816494 30816621 -158462933 + MIR SINE MIR 20 154 -108 2322 89 0 0 chr6 30816675 30816968 -158462586 - AluY SINE Alu -18 293 1 282 250 58 112 chr6 30817793 30818053 -158461501 - L2 LINE L2 -40 3273 3028 384 242 33 0 chr6 30818503 30818594 -158460960 - MER67B LTR ERV1 0 661 568 * 1376 169 108 18 chr6 30818579 30818857 -158460697 - MER67A LTR ERV1 -240 303 1 323 275 83 63 chr6 30819361 30819758 -158459796 - L1MC5 LINE L1 -62 7899 7495 304 267 95 8 chr6 30819749 30819891 -158459663 - L1MC5 LINE L1 -1046 6765 6611 * 2215 135 0 0 chr6 30819896 30820208 -158459346 - AluSx SINE Alu 0 312 1 615 294 114 55 chr6 30820488 30821032 -158458522 - ERVL LTR ERVL -829 4935 4360 859 310 52 34 chr6 30821060 30821557 -158457997 - ERVL LTR ERVL -1496 4268 3763 286 208 0 0 chr6 30821605 30821658 -158457896 - MIR SINE MIR 0 262 210 2035 121 3 19 chr6 30821795 30822110 -158457444 - AluSx SINE Alu -2 310 1 2131 103 17 0 chr6 30823331 30823621 -158455933 + AluSx SINE Alu 1 295 -17 2493 54 0 0 chr6 30826470 30826767 -158452787 - AluY SINE Alu -14 297 1 583 217 188 52 chr6 30826800 30827205 -158452349 - Charlie4a DNA MER1_type -12 496 37 27 0 0 0 chr6 30827617 30827644 -158451910 + AT_rich Low_complexity Low_complexity 1 27 0 229 324 93 0 chr6 30827659 30827695 -158451859 - L2 LINE L2 -760 2554 2523 3867 141 67 2 chr6 30827695 30828291 -158451263 - MER41B LTR ERV1 0 635 1 229 324 93 0 chr6 30828291 30828362 -158451192 - L2 LINE L2 -791 2523 2437 1274 197 54 26 chr6 30828512 30828997 -158450557 - MER34 LTR ERV1 0 542 11 566 171 197 7 chr6 30829121 30829273 -158450281 - MER67C LTR ERV1 0 710 530 * 1043 187 142 24 chr6 30829243 30829574 -158449980 - MER67C LTR ERV1 -338 372 3 1246 231 102 21 chr6 30830078 30830670 -158448884 - LTR48B LTR ERV1 0 644 3 269 231 90 75 chr6 30832429 30832563 -158446991 - L1ME LINE L1 -481 5640 5505 405 234 159 59 chr6 30832584 30832823 -158446731 - L1ME LINE L1 -757 5389 5127 217 227 186 0 chr6 30833163 30833260 -158446294 - MIR SINE MIR -49 213 99 293 79 0 0 chr6 30833318 30833356 -158446198 - LTR56 LTR ERV1 -58 387 350 350 214 78 10 chr6 30833755 30833858 -158445696 + Charlie5 DNA MER1_type 14 123 -2489 905 234 135 6 chr6 30833860 30834125 -158445429 + Charlie5 DNA MER1_type 2234 2552 -72 2034 89 38 21 chr6 30834125 30834416 -158445138 - AluSx SINE Alu -14 298 3 905 234 135 6 chr6 30834416 30834483 -158445071 + Charlie5 DNA MER1_type 2552 2609 -15 2170 117 7 0 chr6 30834491 30834789 -158444765 - AluSg SINE Alu -10 300 1 1947 133 7 13 chr6 30834920 30835220 -158444334 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr6 30835701 30835724 -158443830 + (A)n Simple_repeat Simple_repeat 1 23 0 2078 125 0 0 chr6 30836034 30836315 -158443239 + AluSx SINE Alu 1 281 -31 1489 142 12 20 chr6 30836649 30836902 -158442652 - AluSx SINE Alu -12 300 50 387 0 0 0 chr6 30837150 30837193 -158442361 + (CA)n Simple_repeat Simple_repeat 2 44 0 2342 49 33 29 chr6 30839672 30839978 -158439576 - AluSx SINE Alu -5 307 1 375 332 83 28 chr6 30840397 30840682 -158438872 + L2 LINE L2 2794 3098 -215 1211 279 67 17 chr6 30840933 30841352 -158438202 - LTR16A LTR ERVL -10 440 1 2224 104 3 0 chr6 30841456 30841753 -158437801 - AluSq SINE Alu -2 311 14 585 122 0 0 chr6 30842097 30842171 -158437383 + tRNA-Val-GTG tRNA tRNA 1 74 -2 1391 102 0 0 chr6 30842209 30842395 -158437159 + AluY SINE Alu 122 307 -4 29 28 0 0 chr6 30842835 30842871 -158436683 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr6 30843333 30843358 -158436196 + (A)n Simple_repeat Simple_repeat 1 25 0 299 370 48 0 chr6 30843578 30843743 -158435811 + L2 LINE L2 2925 3097 -175 2017 123 0 7 chr6 30843746 30844046 -158435508 - AluSg SINE Alu -12 298 1 266 88 0 0 chr6 30844075 30844109 -158435445 + U2 snRNA snRNA 1 34 -154 234 95 214 0 chr6 30844109 30844151 -158435403 + U2 snRNA snRNA 7 57 -131 2168 97 17 7 chr6 30844302 30844617 -158434937 + AluSx SINE Alu 1 318 0 296 319 28 14 chr6 30844634 30844775 -158434779 - LTR33 LTR ERVL -77 444 302 * 400 241 106 71 chr6 30844773 30844899 -158434655 - LTR33 LTR ERVL -345 176 41 2437 91 0 0 chr6 30844899 30845206 -158434348 + AluSg SINE Alu 1 307 -3 400 241 106 71 chr6 30845206 30845249 -158434305 - LTR33 LTR ERVL -480 41 1 1715 180 0 40 chr6 30845541 30845864 -158433690 + AluJb SINE Alu 1 310 -2 212 0 36 0 chr6 30846049 30846077 -158433477 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 825 337 22 16 chr6 30846077 30846448 -158433106 - ERVL LTR ERVL -663 5101 4729 365 164 68 0 chr6 30846450 30846523 -158433031 - MLT1A1 LTR MaLR -287 78 1 692 293 102 25 chr6 30846523 30846923 -158432631 - L2 LINE L2 -1312 2002 1572 2120 109 0 0 chr6 30847419 30847764 -158431790 + AluY SINE Alu 1 345 0 22 0 0 0 chr6 30847938 30847960 -158431594 + AT_rich Low_complexity Low_complexity 1 22 0 1428 191 0 12 chr6 30847960 30848212 -158431342 - AluJo SINE Alu -25 287 39 2235 114 13 0 chr6 30848543 30849003 -158430551 + AluSx SINE Alu 1 464 0 620 126 0 0 chr6 30849121 30849208 -158430346 + AluS SINE Alu 2 88 -224 695 0 0 0 chr6 30849981 30850053 -158429501 + tRNA-His-CAC tRNA tRNA 1 72 -3 2131 131 0 0 chr6 30850879 30851170 -158428384 + AluSx SINE Alu 4 294 -18 180 250 0 79 chr6 30851219 30851295 -158428259 - L3 LINE CR1 -351 1226 1157 194 327 10 30 chr6 30852045 30852146 -158427408 + MIR SINE MIR 104 202 -60 378 308 34 14 chr6 30853694 30853840 -158425714 + L2 LINE L2 3165 3313 0 656 40 0 0 chr6 30854125 30854199 -158425355 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 2492 87 0 0 chr6 30855453 30855763 -158423791 + AluSg SINE Alu 1 310 0 212 193 18 35 chr6 30856039 30856096 -158423458 + A-rich Low_complexity Low_complexity 4 59 0 2129 103 32 0 chr6 30856106 30856388 -158423166 + AluSx SINE Alu 2 292 -20 231 36 0 0 chr6 30856394 30856422 -158423132 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 23 68 0 0 chr6 30856789 30856833 -158422721 + AT_rich Low_complexity Low_complexity 1 44 0 1077 179 0 0 chr6 30857047 30857209 -158422345 - FRAM SINE Alu 0 166 5 2318 105 0 0 chr6 30857503 30857799 -158421755 - AluSx SINE Alu -16 296 1 603 207 13 45 chr6 30857833 30858014 -158421540 + MER31-int LTR ERV1 3171 3288 -1648 1747 171 0 35 chr6 30858462 30858778 -158420776 - AluJo SINE Alu -7 305 1 2468 222 53 82 chr6 30858915 30859054 -158420500 + MER31-int LTR ERV1 3401 3543 -1393 1758 151 37 3 chr6 30859054 30859193 -158420361 - AluSx SINE Alu -3 309 176 1894 83 4 8 chr6 30859193 30859447 -158420107 - AluSc SINE Alu -56 253 1 1758 151 37 3 chr6 30859447 30859606 -158419948 - AluSx SINE Alu -136 176 1 2468 222 53 82 chr6 30859606 30860290 -158419264 + MER31-int LTR ERV1 3543 4200 -736 1020 205 144 26 chr6 30860364 30860534 -158419020 + LTR37A LTR ERV1 1 150 -276 2364 152 25 57 chr6 30860534 30860974 -158418580 + MSTB LTR MaLR 1 426 0 1020 205 144 26 chr6 30860974 30861150 -158418404 + LTR37A LTR ERV1 150 388 -38 4972 185 41 12 chr6 30861150 30862062 -158417492 - L1MB5 LINE L1 -15 6159 5275 1689 127 162 4 chr6 30862062 30862321 -158417233 - AluSg SINE Alu 0 300 1 4972 185 41 12 chr6 30862321 30862832 -158416722 - L1MB5 LINE L1 -899 5275 4676 2317 129 0 0 chr6 30862832 30863142 -158416412 - AluSx SINE Alu -2 310 1 4972 185 41 12 chr6 30863142 30863314 -158416240 - L1MB5 LINE L1 -1498 4676 4511 1775 171 37 0 chr6 30863314 30863612 -158415942 + MLT2D LTR ERVL 1 309 -105 441 101 0 0 chr6 30863613 30863682 -158415872 - Alu SINE Alu 0 310 242 309 200 118 0 chr6 30964295 30964380 -158315174 + MIR SINE MIR 79 173 -89 2341 101 0 3 chr6 30965305 30965602 -158313952 - AluSq SINE Alu -17 296 1 235 298 0 0 chr6 30965843 30965926 -158313628 - MIR SINE MIR -151 111 30 186 271 43 71 chr6 30966292 30966432 -158313122 - MIR SINE MIR -56 206 71 264 348 27 9 chr6 30967049 30967161 -158312393 + MIR3 SINE MIR 82 195 -13 326 214 40 56 chr6 30967721 30967847 -158311707 + L1MC5 LINE L1 7802 7925 -36 310 304 204 30 chr6 30968007 30968208 -158311346 - MIR SINE MIR -7 255 20 180 111 0 0 chr6 30968277 30968304 -158311250 + (A)n Simple_repeat Simple_repeat 1 27 0 345 24 0 0 chr6 30968591 30968633 -158310921 + (TG)n Simple_repeat Simple_repeat 1 42 0 1652 185 0 3 chr6 30968982 30969269 -158310285 + AluJb SINE Alu 1 286 -26 395 303 20 20 chr6 30969653 30969805 -158309749 + L3 LINE CR1 624 775 -802 180 396 141 10 chr6 30969911 30970103 -158309451 + L3 LINE CR1 940 1156 -421 235 287 104 26 chr6 30970962 30971077 -158308477 + MIR SINE MIR 18 141 -67 648 267 27 11 chr6 30971099 30971286 -158308268 - MIR SINE MIR -24 238 49 669 214 69 0 chr6 30972774 30972919 -158306635 - MER5A DNA MER1_type 0 189 35 2603 146 58 37 chr6 30974014 30974501 -158305053 - LTR1 LTR ERV1 -1 784 288 4005 99 232 112 chr6 30974501 30975873 -158303681 - pTR5 LTR ERV1 -11 2427 743 887 165 203 5 chr6 30975910 30976118 -158303436 - LTR1 LTR ERV1 -532 253 7 2563 239 11 11 chr6 30976989 30977546 -158302008 - MER90 LTR ERV1 -18 557 1 1991 127 7 42 chr6 30977985 30978292 -158301262 - AluSx SINE Alu -16 296 1 1915 156 0 3 chr6 30978718 30979006 -158300548 - AluSx SINE Alu -25 287 1 200 128 0 26 chr6 30979332 30979371 -158300183 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 340 157 0 0 chr6 30979634 30979685 -158299869 + Alu SINE Alu 1 51 -249 1828 126 7 14 chr6 30979685 30979962 -158299592 + AluSx SINE Alu 25 299 -13 287 203 54 0 chr6 30979962 30980036 -158299518 - L1MC/D LINE L1 -1971 5837 5760 203 227 173 40 chr6 30980042 30980117 -158299437 - MIR3 SINE MIR -34 174 90 270 0 0 0 chr6 30980793 30980823 -158298731 + (TG)n Simple_repeat Simple_repeat 2 31 0 217 277 185 8 chr6 30982047 30982166 -158297388 - L2 LINE L2 0 3272 3133 238 194 56 0 chr6 30982419 30982491 -158297063 - MER116 DNA Mariner 0 80 5 224 313 45 0 chr6 30982661 30982728 -158296826 - MIR3 SINE MIR -49 159 90 398 203 8 0 chr6 30983394 30983512 -158296042 + (TG)n Simple_repeat Simple_repeat 2 120 0 9183 59 3 150 chr6 30984399 30986020 -158293534 - SVA Other Other -2 1384 2 2122 131 6 6 chr6 30986438 30986751 -158292803 + AluSq SINE Alu 1 313 0 183 175 53 0 chr6 30987556 30987613 -158291941 + (TAA)n Simple_repeat Simple_repeat 2 61 0 878 255 97 90 chr6 30988302 30988737 -158290817 - LTR16A1 LTR ERVL 0 457 20 833 232 51 0 chr6 30988865 30989042 -158290512 + MER5A DNA MER1_type 4 189 0 375 98 0 0 chr6 30989286 30989337 -158290217 + MER31B LTR ERV1 1 51 -415 432 209 0 44 chr6 30989337 30989428 -158290126 + MER21B LTR ERV1 1 87 -776 3481 226 47 14 chr6 30989449 30990216 -158289338 + MER21B LTR ERV1 18 809 -54 1024 219 214 11 chr6 30990237 30990593 -158288961 + MER31B LTR ERV1 39 466 0 1457 158 110 0 chr6 30990907 30991190 -158288364 + AluJb SINE Alu 1 311 0 2188 108 7 3 chr6 30992019 30992316 -158287238 + AluSx SINE Alu 1 298 -14 295 325 67 0 chr6 30993354 30993474 -158286080 - L2 LINE L2 -966 2348 2221 717 303 88 40 chr6 30993927 30994766 -158284788 + L1M4 LINE L1 2261 3139 -3007 253 265 24 0 chr6 30995031 30995114 -158284440 - MIR SINE MIR 0 262 178 8405 64 8 4 chr6 30995484 30996487 -158283067 - LTR13 LTR ERVK 0 1007 1 313 246 0 0 chr6 30996642 30996707 -158282847 - tRNA-Leu-CTT tRNA tRNA -20 65 1 222 118 0 0 chr6 30997784 30997818 -158281736 + (A)n Simple_repeat Simple_repeat 1 34 0 604 81 0 0 chr6 30998466 30998540 -158281014 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 428 86 0 0 chr6 30999012 30999070 -158280484 - AluSx SINE Alu -12 298 241 1514 96 5 0 chr6 30999070 30999269 -158280285 - AluSx SINE Alu -112 200 1 484 344 37 9 chr6 30999416 30999631 -158279923 + MIR SINE MIR 38 258 -4 418 209 47 85 chr6 30999698 30999822 -158279732 + LTR8 LTR ERV1 1 119 -572 2537 110 48 0 chr6 30999822 31000177 -158279377 + MER83 LTR ERV1 1 372 -76 1505 209 26 41 chr6 31000176 31000361 -158279193 + MLT1C LTR MaLR 86 272 -195 * 4525 119 26 39 chr6 31000361 31001061 -158278493 + LTR8 LTR ERV1 1 691 0 1505 209 26 41 chr6 31001061 31001263 -158278291 + MLT1C LTR MaLR 272 467 0 3021 178 71 26 chr6 31001495 31002158 -158277396 + LTR8A LTR ERV1 34 726 -1 603 230 80 49 chr6 31002201 31002427 -158277127 + LTR16A1 LTR ERVL 116 348 -109 786 201 7 7 chr6 31002495 31002639 -158276915 - AluJb SINE Alu -35 277 134 2776 17 0 0 chr6 31002676 31002977 -158276577 + AluYa5 SINE Alu 1 301 -10 204 179 0 0 chr6 31003080 31003119 -158276435 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 2633 208 30 113 chr6 31003123 31003682 -158275872 + L1M4 LINE L1 2759 3221 -2925 241 62 0 104 chr6 31003682 31003730 -158275824 + Alu SINE Alu 130 172 -3 2633 208 30 113 chr6 31003730 31004304 -158275250 + L1M4 LINE L1 3221 3841 -2305 540 242 25 8 chr6 31004327 31004530 -158275024 + L1M4 LINE L1 4369 4574 -1572 605 164 0 0 chr6 31004583 31004687 -158274867 - AluJb SINE Alu 0 312 209 850 304 46 38 chr6 31004695 31005090 -158274464 - MER70-int LTR ERVL -1878 3145 2748 912 220 35 4 chr6 31005091 31005323 -158274231 - L1M4 LINE L1 -1428 4718 4480 551 313 0 0 chr6 31005367 31005533 -158274021 - MER70-int LTR ERVL -2412 2611 2446 561 340 39 12 chr6 31005581 31005840 -158273714 + MER70-int LTR ERVL 562 827 -4196 309 213 62 0 chr6 31006181 31006261 -158273293 - MER70-int LTR ERVL -4457 566 482 958 197 11 0 chr6 31006325 31006508 -158273046 + MLT1D LTR MaLR 321 505 0 362 222 0 0 chr6 31006737 31006809 -158272745 - tRNA-Met-e tRNA tRNA -3 72 1 489 251 8 123 chr6 31007636 31007738 -158271816 - MIR SINE MIR -2 260 199 1416 87 5 5 chr6 31007738 31007923 -158271631 - L1PB1 LINE L1 -3 6148 5964 489 251 8 123 chr6 31007923 31008055 -158271499 - MIR SINE MIR -63 199 53 731 37 0 0 chr6 31008831 31008913 -158270641 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 367 322 157 36 chr6 31009322 31009685 -158269869 - L1MC4a LINE L1 -1908 5900 5494 304 345 24 43 chr6 31009699 31009908 -158269646 - MIR SINE MIR 0 262 58 1654 211 88 55 chr6 31009917 31010406 -158269148 + MLT1D LTR MaLR 1 505 0 22 56 0 0 chr6 31011283 31011319 -158268235 + AT_rich Low_complexity Low_complexity 1 36 0 355 243 162 11 chr6 31011491 31011615 -158267939 + L1M4 LINE L1 4222 4326 -1820 2294 101 0 16 chr6 31011615 31011932 -158267622 + AluSx SINE Alu 1 312 0 355 243 162 11 chr6 31011932 31011992 -158267562 + L1M4 LINE L1 4326 4434 -1712 614 95 0 0 chr6 31012911 31012985 -158266569 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 520 260 4 122 chr6 31013637 31013883 -158265671 - L2 LINE L2 -3 3310 3094 303 343 71 0 chr6 31014130 31014270 -158265284 + MIR SINE MIR 40 189 -73 1120 61 0 0 chr6 31015115 31015247 -158264307 - AluY SINE Alu -179 132 1 4170 164 8 29 chr6 31015483 31016252 -158263302 + L1MC3 LINE L1 6176 6928 -857 475 262 64 14 chr6 31016251 31016392 -158263162 - L1MEc LINE L1 -5990 406 259 * 42 0 0 0 chr6 31016431 31016473 -158263081 + AT_rich Low_complexity Low_complexity 1 42 0 2175 89 7 0 chr6 31016591 31016882 -158262672 - AluSx SINE Alu -19 293 1 4275 133 47 59 chr6 31017620 31019028 -158260526 + pTR5 LTR ERV1 743 2425 -13 201 242 136 0 chr6 31019161 31019227 -158260327 + L2 LINE L2 3208 3282 -31 505 154 209 0 chr6 31019318 31019409 -158260145 - FLAM_C SINE Alu -23 120 11 2011 129 27 7 chr6 31020088 31020383 -158259171 - AluSx SINE Alu -11 301 1 375 260 81 16 chr6 31020543 31020666 -158258888 + MIR SINE MIR 88 218 -44 186 43 0 0 chr6 31020674 31020697 -158258857 + (TTA)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 31021178 31021202 -158258352 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr6 31022041 31022062 -158257492 + AT_rich Low_complexity Low_complexity 1 21 0 228 267 52 47 chr6 31022383 31022555 -158256999 - HAL1 LINE L1 0 2507 2335 1937 134 3 72 chr6 31022577 31022912 -158256642 - AluSx SINE Alu 0 312 1 1837 179 0 3 chr6 31023119 31023421 -158256133 - AluJb SINE Alu -11 301 1 388 246 218 0 chr6 31023551 31023730 -158255824 - HAL1 LINE L1 -590 1917 1700 607 242 199 26 chr6 31024190 31024377 -158255177 - HAL1 LINE L1 -805 1702 1549 306 0 0 0 chr6 31024377 31024411 -158255143 + (CA)n Simple_repeat Simple_repeat 2 35 0 607 242 199 26 chr6 31024411 31024640 -158254914 - HAL1 LINE L1 -958 1549 1214 294 73 0 0 chr6 31024933 31024974 -158254580 + (TG)n Simple_repeat Simple_repeat 2 42 0 1618 308 87 28 chr6 31025242 31026347 -158253207 - HAL1 LINE L1 -1337 1170 1 2317 85 0 0 chr6 31026381 31026675 -158252879 + AluSc SINE Alu 1 294 -15 209 324 0 14 chr6 31026868 31026939 -158252615 + L2 LINE L2 3244 3313 0 974 323 62 12 chr6 31027446 31027849 -158251705 + L2 LINE L2 2889 3311 -2 292 305 61 15 chr6 31027868 31027999 -158251555 + MER5A DNA MER1_type 7 143 -46 873 133 0 23 chr6 31028413 31028541 -158251013 + FLAM_C SINE Alu 3 127 -6 5543 157 51 7 chr6 31029325 31030432 -158249122 - L1MC1 LINE L1 0 6333 5180 212 59 29 0 chr6 31031187 31031221 -158248333 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 327 348 19 25 chr6 31032201 31032359 -158247195 + HERV16 LTR ERVL 4101 4257 -1397 849 329 54 14 chr6 31032504 31032930 -158246624 + HERV16 LTR ERVL 4557 4999 -765 540 0 0 0 chr6 31032938 31032998 -158246556 + (GAGAA)n Simple_repeat Simple_repeat 2 61 0 278 253 53 21 chr6 31032998 31033093 -158246461 + HERV16 LTR ERVL 4589 4686 -310 229 283 66 69 chr6 31033202 31033520 -158246034 + L1ME LINE L1 4903 5219 -927 463 252 14 68 chr6 31033523 31033670 -158245884 - MER69A DNA AcHobo 0 177 39 22 35 0 0 chr6 31033814 31033843 -158245711 + AT_rich Low_complexity Low_complexity 1 29 0 360 70 53 0 chr6 31033895 31033952 -158245602 + Alu SINE Alu 240 299 -3 964 313 53 33 chr6 31034262 31034808 -158244746 - LTR67 LTR ERVL 0 557 1 343 254 149 0 chr6 31034904 31035038 -158244516 + L1ME LINE L1 5665 5818 -352 2015 106 3 18 chr6 31035039 31035343 -158244211 + AluSg SINE Alu 1 300 0 22 0 0 0 chr6 31035388 31035410 -158244144 + AT_rich Low_complexity Low_complexity 1 22 0 895 191 0 24 chr6 31035530 31035698 -158243856 - AluJb SINE Alu -3 309 146 5060 130 32 1 chr6 31035698 31036577 -158242977 + L1MA4A LINE L1 5395 6300 -3 445 331 184 4 chr6 31036588 31036860 -158242694 - L2 LINE L2 -778 2536 2216 1652 61 69 48 chr6 31037077 31037308 -158242246 + AluY SINE Alu 58 293 -18 2308 112 3 0 chr6 31037475 31037780 -158241774 + AluSq SINE Alu 1 306 -7 232 302 198 17 chr6 31037819 31037935 -158241619 + MIR SINE MIR 16 152 -56 599 295 47 8 chr6 31037951 31038205 -158241349 - L1ME3A LINE L1 -11 6159 5896 24 0 0 0 chr6 31039624 31039648 -158239906 + AT_rich Low_complexity Low_complexity 1 24 0 1090 228 135 17 chr6 31040659 31041015 -158238539 - L1ME3A LINE L1 -280 5890 5493 376 269 28 0 chr6 31041083 31041191 -158238363 + L1MC4a LINE L1 5451 5561 -2247 760 278 127 50 chr6 31041212 31042072 -158237482 + L1MC4a LINE L1 5693 6618 -1190 273 79 90 11 chr6 31042081 31042170 -158237384 + (TA)n Simple_repeat Simple_repeat 1 96 0 27 73 0 0 chr6 31042180 31042235 -158237319 + AT_rich Low_complexity Low_complexity 1 55 0 267 150 53 86 chr6 31042235 31042358 -158237196 + L1MC4a LINE L1 6595 6668 -1140 4794 129 79 14 chr6 31042358 31043134 -158236420 + LTR12 LTR ERV1 1 826 0 987 210 95 65 chr6 31043146 31043370 -158236184 + L1MC4 LINE L1 6733 6976 -1066 1208 126 239 8 chr6 31043370 31043609 -158235945 + AluSx SINE Alu 1 294 -8 987 210 95 65 chr6 31043609 31043784 -158235770 + L1MC4 LINE L1 6976 7144 -898 495 147 42 11 chr6 31043785 31043880 -158235674 + MIR SINE MIR 114 211 -51 775 188 46 130 chr6 31044615 31044876 -158234678 - MIR SINE MIR -21 241 3 479 286 64 7 chr6 31045216 31045356 -158234198 - MIR SINE MIR -30 232 85 2176 113 3 3 chr6 31045375 31045677 -158233877 + AluSq SINE Alu 1 302 -11 1026 268 83 16 chr6 31047069 31047620 -158231934 + L2 LINE L2 2577 3169 -144 993 263 16 31 chr6 31047677 31047932 -158231622 + MIR SINE MIR 12 262 0 527 229 37 0 chr6 31047941 31048050 -158231504 + L2 LINE L2 3190 3302 -11 193 194 0 0 chr6 31048050 31048086 -158231468 + L2 LINE L2 3278 3313 0 2081 102 39 7 chr6 31048165 31048449 -158231105 + AluSg SINE Alu 1 293 -17 2724 72 16 24 chr6 31048714 31049090 -158230464 + THE1C LTR MaLR 1 373 -2 2354 101 0 0 chr6 31049156 31049463 -158230091 + AluSx SINE Alu 2 308 -4 384 195 24 0 chr6 31049761 31049843 -158229711 - MER112 DNA MER1_type -175 85 2 1839 101 0 4 chr6 31049942 31050189 -158229365 - AluSx SINE Alu -3 309 64 200 266 89 65 chr6 31050485 31050609 -158228945 - MIR SINE MIR -24 238 112 771 284 13 0 chr6 31052137 31052292 -158227262 - L2 LINE L2 0 3272 3116 26 64 0 0 chr6 31053448 31053495 -158226059 + AT_rich Low_complexity Low_complexity 1 47 0 564 234 131 17 chr6 31054127 31054302 -158225252 - MIR3 SINE MIR -6 202 8 25 65 0 0 chr6 31054478 31054524 -158225030 + AT_rich Low_complexity Low_complexity 1 46 0 468 244 85 26 chr6 31054602 31054872 -158224682 - L1MC4a LINE L1 -1777 6031 5746 410 255 28 9 chr6 31055969 31056075 -158223479 + MER5A DNA MER1_type 31 138 -51 592 144 21 0 chr6 31056102 31056199 -158223355 + MER94 DNA DNA 1 99 -35 189 0 0 0 chr6 31057152 31057173 -158222381 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 199 235 0 39 chr6 31058224 31058275 -158221279 - L2 LINE L2 -7 3306 3258 272 319 60 118 chr6 31058814 31059435 -158220119 - L2 LINE L2 -573 2741 2157 2139 101 21 0 chr6 31059467 31059753 -158219801 - AluSp SINE Alu -21 292 1 2144 164 0 0 chr6 31059846 31060194 -158219360 + MER7A DNA MER2_type 1 346 0 212 347 0 25 chr6 31060252 31060373 -158219181 - L2 LINE L2 -1295 2019 1902 2025 88 66 4 chr6 31060458 31060731 -158218823 + AluSq SINE Alu 1 290 -23 183 241 0 56 chr6 31060749 31060788 -158218766 + L2 LINE L2 3212 3249 -23 15471 112 24 13 chr6 31060788 31061945 -158217609 + Tigger1 DNA MER2_type 1 1143 -1275 1703 154 4 4 chr6 31061945 31062228 -158217326 + AluJb SINE Alu 23 305 0 15471 112 24 13 chr6 31062228 31063460 -158216094 + Tigger1 DNA MER2_type 1143 2418 0 183 241 0 56 chr6 31063460 31063474 -158216080 + L2 LINE L2 3249 3262 -10 2844 229 43 69 chr6 31065335 31066770 -158212784 - L1MC5 LINE L1 -49 7912 6503 1569 213 13 16 chr6 31068401 31068711 -158210843 - AluJo SINE Alu -3 309 1 24 53 0 0 chr6 31068898 31068936 -158210618 + AT_rich Low_complexity Low_complexity 1 38 0 930 205 0 0 chr6 31069169 31069335 -158210219 + FRAM SINE Alu 1 164 -12 2321 75 0 0 chr6 31069337 31069642 -158209912 + AluY SINE Alu 1 305 0 801 81 0 0 chr6 31069643 31069754 -158209800 + L1MA1 LINE L1 6192 6302 0 669 182 9 0 chr6 31069811 31069921 -158209633 - FLAM_C SINE Alu -32 111 1 208 237 0 0 chr6 31070159 31070197 -158209357 - MIR SINE MIR -218 44 7 292 214 67 45 chr6 31070229 31070318 -158209236 - MIR SINE MIR -56 206 116 2508 34 10 3 chr6 31070482 31070779 -158208775 + AluY SINE Alu 1 299 -12 300 214 183 1 chr6 31071110 31071204 -158208350 + MER5A DNA MER1_type 62 189 0 261 313 184 6 chr6 31071464 31071627 -158207927 - MIR SINE MIR -50 212 21 900 274 35 52 chr6 31072366 31072691 -158206863 + L1ME LINE L1 205 524 -5546 2117 73 48 0 chr6 31072691 31072986 -158206568 + AluSq SINE Alu 1 308 0 900 274 35 52 chr6 31072986 31073060 -158206494 + L1ME LINE L1 524 598 -5472 350 284 114 34 chr6 31073285 31073461 -158206093 - L2 LINE L2 -92 3221 3032 1737 203 16 0 chr6 31073789 31074095 -158205459 + AluJb SINE Alu 2 312 0 189 340 117 25 chr6 31074129 31074291 -158205263 - MIR3 SINE MIR -29 179 3 1893 110 78 4 chr6 31074356 31074637 -158204917 - AluSg SINE Alu -8 302 1 1578 181 101 21 chr6 31074750 31075088 -158204466 + MLT1A1 LTR MaLR 1 365 0 1868 173 0 29 chr6 31075097 31075410 -158204144 - AluJo SINE Alu -8 304 1 201 175 0 0 chr6 31075424 31075464 -158204090 + CT-rich Low_complexity Low_complexity 2 41 0 3288 152 44 94 chr6 31075499 31076144 -158203410 + L1P4 LINE L1 4379 5055 -1111 866 86 0 0 chr6 31076144 31076260 -158203294 + AluY SINE Alu 191 306 -5 3288 152 44 94 chr6 31076260 31077005 -158202549 + L1P4 LINE L1 5055 5792 -374 1150 131 0 12 chr6 31077008 31077176 -158202378 - AluJo SINE Alu -146 166 1 291 29 0 0 chr6 31077238 31077273 -158202281 - U2 snRNA snRNA -153 35 1 214 297 0 0 chr6 31077278 31077352 -158202202 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 210 259 37 0 chr6 31079653 31079707 -158199847 - MIR SINE MIR -67 141 86 1656 201 60 52 chr6 31079722 31080169 -158199385 + MER74C LTR ERVL 10 460 0 181 286 33 77 chr6 31080169 31080260 -158199294 - MIR SINE MIR -173 89 3 767 229 0 7 chr6 31080780 31080933 -158198621 - FRAM SINE Alu -17 159 8 348 292 64 77 chr6 31081082 31081315 -158198239 - HAL1 LINE L1 -33 2474 2245 2240 95 0 0 chr6 31081901 31082213 -158197341 - AluSx SINE Alu 0 312 1 7157 50 5 0 chr6 31082459 31083731 -158195823 + L1PA6 LINE L1 4876 6151 -3 871 249 82 4 chr6 31083999 31084244 -158195310 - MLT1H1 LTR MaLR 0 555 292 957 244 29 4 chr6 31084362 31084600 -158194954 - MLT1H1 LTR MaLR -311 244 1 336 346 99 43 chr6 31085511 31085884 -158193670 + L2 LINE L2 2122 2515 -799 1142 285 113 23 chr6 31085966 31087329 -158192225 - L1MC/D LINE L1 -743 5403 4203 280 316 31 10 chr6 31088231 31088329 -158191225 - MIR3 SINE MIR -6 202 103 2511 26 0 48 chr6 31088593 31088904 -158190650 - AluY SINE Alu -15 296 1 782 179 0 148 chr6 31090254 31090511 -158189043 + MER20 DNA MER1_type 1 219 0 2070 145 3 0 chr6 31090636 31090947 -158188607 + AluSx SINE Alu 1 312 0 449 336 14 0 chr6 31091167 31091307 -158188247 - L2 LINE L2 -8 3305 3164 1414 128 38 5 chr6 31091308 31091519 -158188035 + AluJo SINE Alu 82 299 -13 393 304 44 39 chr6 31091531 31091735 -158187819 - L2 LINE L2 -158 3155 2951 2354 242 14 74 chr6 31091761 31092304 -158187250 - L2 LINE L2 -454 2860 2375 2293 107 0 0 chr6 31092304 31092602 -158186952 + AluSx SINE Alu 1 298 -14 2354 242 14 74 chr6 31092602 31092830 -158186724 - L2 LINE L2 -939 2375 2135 272 237 86 21 chr6 31093259 31093352 -158186202 - MIR SINE MIR -147 115 17 1528 174 27 8 chr6 31093784 31094043 -158185511 - AluJo SINE Alu -12 300 37 273 324 11 28 chr6 31094050 31094232 -158185322 + CT-rich Low_complexity Low_complexity 2 180 0 275 295 21 21 chr6 31094313 31094408 -158185146 - L2 LINE L2 -221 3051 2957 397 181 16 94 chr6 31094985 31095060 -158184494 + L1MC4 LINE L1 7860 7923 -119 2465 79 7 0 chr6 31095060 31095365 -158184189 + AluSg SINE Alu 1 307 -3 397 181 16 94 chr6 31095365 31095416 -158184138 + L1MC4 LINE L1 7923 7976 -66 253 336 86 52 chr6 31097187 31097303 -158182251 - L2 LINE L2 -14 3258 3139 209 378 54 0 chr6 31097749 31097860 -158181694 - MIR SINE MIR -62 146 30 420 296 79 5 chr6 31097873 31098038 -158181516 - MER5A DNA MER1_type -1 188 1 1296 229 36 22 chr6 31099490 31099853 -158179701 - MER87 LTR ERV1 0 541 174 2191 118 3 7 chr6 31100408 31100712 -158178842 + AluSc SINE Alu 1 303 -6 523 281 42 3 chr6 31101775 31101978 -158177576 - MIR SINE MIR -1 261 3 837 198 132 22 chr6 31103385 31103612 -158175942 + MIR SINE MIR 11 262 0 382 217 43 11 chr6 31104405 31104497 -158175057 + MIR SINE MIR 70 164 -98 180 0 0 0 chr6 31106697 31106717 -158172837 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 31107695 31107716 -158171838 + AT_rich Low_complexity Low_complexity 1 21 0 2376 89 0 3 chr6 31107909 31108213 -158171341 - AluSg SINE Alu -7 303 1 769 305 77 8 chr6 31108584 31109115 -158170439 - L1M4 LINE L1 -2215 3931 3364 1886 170 3 10 chr6 31109151 31109457 -158170097 - AluJo SINE Alu -8 304 1 379 206 93 0 chr6 31109467 31109514 -158170040 - L1MA10 LINE L1 -2 6332 6286 812 217 61 64 chr6 31109514 31109809 -158169745 - L1ME1 LINE L1 -48 6118 5825 2370 85 7 0 chr6 31109810 31110103 -158169451 - AluSc SINE Alu -14 295 1 2334 113 0 0 chr6 31110658 31110968 -158168586 + AluSq SINE Alu 1 310 -3 326 297 110 32 chr6 31111132 31111287 -158168267 - L2 LINE L2 0 3313 3147 706 243 39 6 chr6 31111291 31111472 -158168082 + L1MDa LINE L1 22 208 -6332 686 161 116 20 chr6 31111564 31111763 -158167791 - L1MDa LINE L1 -5164 1376 1159 * 1494 224 64 6 chr6 31111759 31112258 -158167296 + L1M4 LINE L1 2658 3185 -2961 1510 195 44 12 chr6 31112280 31112619 -158166935 + L1MA6 LINE L1 5939 6288 -12 4828 240 74 41 chr6 31112636 31114541 -158165013 + L1M4 LINE L1 3215 5199 -957 2530 74 0 0 chr6 31114541 31114850 -158164704 + AluSc SINE Alu 1 309 0 4828 240 74 41 chr6 31114850 31115016 -158164538 + L1M4 LINE L1 5199 5358 -798 1869 137 0 58 chr6 31115470 31115783 -158163771 - AluJo SINE Alu -17 295 1 1092 136 205 110 chr6 31116137 31116349 -158163205 - MER7A DNA MER2_type -2693 345 94 1783 159 14 0 chr6 31116349 31116625 -158162929 - AluJo SINE Alu -22 290 11 1092 136 205 110 chr6 31116625 31116729 -158162825 - MER7A DNA MER2_type -2944 94 1 1123 273 94 3 chr6 31116808 31117149 -158162405 - REP3 LTR ERV -187 375 4 216 214 298 0 chr6 31117234 31117318 -158162236 + L2 LINE L2 3161 3269 -3 242 214 0 0 chr6 31117476 31117518 -158162036 - L2 LINE L2 -37 3235 3194 1214 233 120 26 chr6 31117731 31118165 -158161389 + MLT2B1 LTR ERVL 1 479 -41 257 227 35 0 chr6 31118152 31118246 -158161308 + (TA)n Simple_repeat Simple_repeat 1 97 0 * 306 112 0 8 chr6 31118246 31118297 -158161257 + MLT2C2 LTR ERVL 417 456 -8 2124 68 65 0 chr6 31119249 31119362 -158160192 + AluY SINE Alu 1 105 -206 2266 39 28 3 chr6 31119362 31119645 -158159909 + L1PA5 LINE L1 5865 6154 0 2124 68 65 0 chr6 31119645 31119810 -158159744 + AluY SINE Alu 105 297 -14 787 143 56 0 chr6 31120083 31120209 -158159345 + FLAM_C SINE Alu 1 133 0 2261 106 0 0 chr6 31120317 31120609 -158158945 + AluY SINE Alu 1 292 -19 1950 121 0 0 chr6 31122544 31122809 -158156745 + AluSx SINE Alu 40 304 -8 231 309 72 33 chr6 31122911 31123063 -158156491 + MIR3 SINE MIR 45 202 -6 1588 199 0 20 chr6 31123271 31123567 -158155987 + AluJo SINE Alu 15 304 -8 609 134 0 31 chr6 31124336 31124433 -158155121 + FRAM SINE Alu 64 157 -19 307 329 94 0 chr6 31125236 31125406 -158154148 + L2 LINE L2 3119 3304 -9 1477 150 0 13 chr6 31125438 31125665 -158153889 + AluJb SINE Alu 7 230 -82 582 133 16 62 chr6 31125671 31125799 -158153755 + AluJb SINE Alu 191 312 0 658 261 93 19 chr6 31126265 31126480 -158153074 - MIR SINE MIR -29 233 3 1565 220 92 29 chr6 31126978 31127456 -158152098 + Charlie4a DNA MER1_type 1 508 0 1107 194 20 45 chr6 31128430 31128613 -158150941 + MLT1E2 LTR MaLR 386 563 -63 2177 130 13 0 chr6 31128613 31128921 -158150633 - AluSx SINE Alu 0 312 1 1107 194 20 45 chr6 31128921 31128984 -158150570 + MLT1E2 LTR MaLR 563 626 0 564 242 155 0 chr6 31128982 31129176 -158150378 - MER2 DNA MER2_type 0 345 122 * 887 171 0 19 chr6 31129177 31129335 -158150219 + FRAM SINE Alu 1 154 -22 693 186 23 16 chr6 31129336 31129465 -158150089 - MER2 DNA MER2_type -215 130 1 480 226 266 23 chr6 31130100 31130277 -158149277 + MIR SINE MIR 15 234 -28 882 266 138 19 chr6 31130277 31130596 -158148958 + LTR18A LTR ERVL 1 357 0 1523 201 16 16 chr6 31130602 31130915 -158148639 + HERVL18 LTR ERVL 1 313 -5734 1499 193 19 4 chr6 31130889 31131158 -158148396 + HERVL18 LTR ERVL 492 764 -5283 * 499 206 0 0 chr6 31131165 31131257 -158148297 + HERVL18 LTR ERVL 871 962 -5085 * 1182 172 3 16 chr6 31131244 31131606 -158147948 + HERVL18 LTR ERVL 1390 1810 -4237 * 1493 136 23 12 chr6 31131605 31131903 -158147651 + HERVL18 LTR ERVL 2119 2477 -3570 * 5512 161 15 8 chr6 31131877 31132735 -158146819 + HERVL18 LTR ERVL 2718 3581 -2466 636 130 11 0 chr6 31132735 31132827 -158146727 + HERVL18 LTR ERVL 4394 4486 -1561 254 339 0 0 chr6 31132829 31132888 -158146666 + HERVL18 LTR ERVL 5209 5267 -780 2238 147 196 40 chr6 31133131 31133662 -158145892 + LTR18B LTR ERVL 1 614 0 205 338 198 14 chr6 31133739 31133961 -158145593 + L2 LINE L2 2133 2395 -919 2485 80 0 19 chr6 31134260 31134573 -158144981 + AluSc SINE Alu 1 307 -2 613 199 5 108 chr6 31134895 31134980 -158144574 + MER5B DNA MER1_type 5 62 -116 1502 153 18 0 chr6 31134980 31135202 -158144352 + AluSx SINE Alu 3 228 -84 613 199 5 108 chr6 31135202 31135302 -158144252 + MER5B DNA MER1_type 62 171 -7 526 221 45 111 chr6 31135305 31135754 -158143800 + L1MC5 LINE L1 7375 7793 -168 262 199 35 28 chr6 31135793 31135934 -158143620 + GA-rich Low_complexity Low_complexity 5 146 0 325 214 34 43 chr6 31135938 31136055 -158143499 + L1MC5 LINE L1 7810 7925 -36 309 275 99 8 chr6 31136358 31136489 -158143065 + L1MC4a LINE L1 6441 6583 -1225 792 224 20 5 chr6 31136910 31137106 -158142448 - MIR SINE MIR -52 210 12 315 49 0 0 chr6 31137410 31137451 -158142103 + (CA)n Simple_repeat Simple_repeat 1 41 0 306 273 67 34 chr6 31137737 31137946 -158141608 + L1MC4a LINE L1 5871 6086 -1722 333 240 6 28 chr6 31138269 31138605 -158140949 + (TA)n Simple_repeat Simple_repeat 1 328 0 1123 295 67 48 chr6 31138605 31139739 -158139815 + L1MC/D LINE L1 4532 5676 -553 358 222 65 158 chr6 31139739 31140201 -158139353 - L2 LINE L2 -17 3296 2834 385 341 66 2 chr6 31140216 31140486 -158139068 - LTR16A LTR ERVL -51 399 73 2149 112 3 29 chr6 31140795 31141107 -158138447 + AluSx SINE Alu 1 304 -8 975 292 100 85 chr6 31141133 31142269 -158137285 - ERVL LTR ERVL -550 5104 3632 1864 162 3 49 chr6 31142269 31142596 -158136958 - AluSx SINE Alu 0 312 1 975 292 100 85 chr6 31142596 31143022 -158136532 - ERVL LTR ERVL -2022 3632 3214 2558 290 70 53 chr6 31143262 31143616 -158135938 - ERVL LTR ERVL -2158 2838 2492 2300 64 61 10 chr6 31143616 31143912 -158135642 + AluY SINE Alu 1 311 0 2558 290 70 53 chr6 31143912 31144709 -158134845 - ERVL LTR ERVL -2504 2492 1667 842 312 54 9 chr6 31144734 31145051 -158134503 - ERVL LTR ERVL -3933 1063 733 699 325 50 14 chr6 31145084 31145364 -158134190 - ERVL LTR ERVL -4343 653 364 465 271 0 8 chr6 31145495 31145613 -158133941 + LTR40c LTR ERVL 3 119 -346 866 335 65 29 chr6 31145613 31145854 -158133700 - L1M3c LINE L1 -5701 440 176 1729 209 19 8 chr6 31145854 31146213 -158133341 + MLT1A1 LTR MaLR 3 365 0 866 335 65 29 chr6 31146213 31146386 -158133168 - L1M3c LINE L1 -5965 176 11 858 243 36 102 chr6 31146391 31146784 -158132770 + L1MEc LINE L1 1585 1946 -4450 2359 109 33 14 chr6 31146784 31147152 -158132402 - THE1C LTR MaLR 0 375 1 858 243 36 102 chr6 31147152 31147207 -158132347 + L1MEc LINE L1 1946 2003 -4393 304 194 0 0 chr6 31147237 31147299 -158132255 + L1MEc LINE L1 1994 2055 -4341 348 252 71 47 chr6 31147354 31147481 -158132073 + MER69 DNA AcHobo 1 130 -1096 595 249 51 55 chr6 31147501 31147718 -158131836 + MER69 DNA AcHobo 51 266 -960 1850 193 77 24 chr6 31147730 31147855 -158131699 + MER69 DNA AcHobo 1458 1575 -951 1932 121 33 0 chr6 31147855 31148128 -158131426 + AluSx SINE Alu 1 282 -30 1850 193 77 24 chr6 31148128 31148812 -158130742 + MER69 DNA AcHobo 1575 2384 -142 682 201 49 42 chr6 31148813 31148957 -158130597 + FRAM SINE Alu 1 143 -33 1618 183 56 0 chr6 31149042 31149326 -158130228 - AluSx SINE Alu -12 300 1 397 189 9 66 chr6 31149326 31149348 -158130206 + MER69 DNA AcHobo 2396 2418 -108 1494 185 61 14 chr6 31149348 31149664 -158129890 - AluJo SINE Alu 0 312 1 397 189 9 66 chr6 31149664 31149747 -158129807 + MER69 DNA AcHobo 2418 2495 -31 215 366 89 0 chr6 31149762 31149885 -158129669 + L2 LINE L2 3180 3313 0 461 335 67 0 chr6 31149929 31150108 -158129446 + L2 LINE L2 2553 2743 -571 180 0 0 0 chr6 31201832 31201852 -158077702 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr6 31202830 31202851 -158076703 + AT_rich Low_complexity Low_complexity 1 21 0 2376 89 0 3 chr6 31203044 31203348 -158076206 - AluSg SINE Alu -7 303 1 769 305 77 8 chr6 31203719 31204250 -158075304 - L1M4 LINE L1 -2215 3931 3364 1886 170 3 10 chr6 31204286 31204592 -158074962 - AluJo SINE Alu -8 304 1 379 206 93 0 chr6 31204602 31204649 -158074905 - L1MA10 LINE L1 -2 6332 6286 812 217 61 64 chr6 31204649 31204944 -158074610 - L1ME1 LINE L1 -48 6118 5825 2370 85 7 0 chr6 31204945 31205238 -158074316 - AluSc SINE Alu -14 295 1 2334 113 0 0 chr6 31205793 31206103 -158073451 + AluSq SINE Alu 1 310 -3 326 297 110 32 chr6 31206267 31206422 -158073132 - L2 LINE L2 0 3313 3147 706 243 39 6 chr6 31206426 31206607 -158072947 + L1MDa LINE L1 22 208 -6332 686 161 116 20 chr6 31206699 31206898 -158072656 - L1MDa LINE L1 -5164 1376 1159 * 1494 224 64 6 chr6 31206894 31207393 -158072161 + L1M4 LINE L1 2658 3185 -2961 1510 195 44 12 chr6 31207415 31207754 -158071800 + L1MA6 LINE L1 5939 6288 -12 4828 240 74 41 chr6 31207771 31209676 -158069878 + L1M4 LINE L1 3215 5199 -957 2530 74 0 0 chr6 31209676 31209985 -158069569 + AluSc SINE Alu 1 309 0 4828 240 74 41 chr6 31209985 31210151 -158069403 + L1M4 LINE L1 5199 5358 -798 1869 137 0 58 chr6 31210605 31210918 -158068636 - AluJo SINE Alu -17 295 1 1092 136 205 110 chr6 31211272 31211484 -158068070 - MER7A DNA MER2_type -2693 345 94 1783 159 14 0 chr6 31211484 31211760 -158067794 - AluJo SINE Alu -22 290 11 1092 136 205 110 chr6 31211760 31211864 -158067690 - MER7A DNA MER2_type -2944 94 1 1123 273 94 3 chr6 31211943 31212284 -158067270 - REP3 LTR ERV -187 375 4 216 214 298 0 chr6 31212369 31212453 -158067101 + L2 LINE L2 3161 3269 -3 242 214 0 0 chr6 31212611 31212653 -158066901 - L2 LINE L2 -37 3235 3194 1214 239 119 31 chr6 31212866 31213285 -158066269 + MLT2B1 LTR ERVL 1 456 -64 204 217 33 0 chr6 31213287 31213379 -158066175 + (TA)n Simple_repeat Simple_repeat 2 96 0 287 112 0 8 chr6 31213381 31213432 -158066122 + MLT2C1 LTR ERVL 350 389 -8 2071 68 65 0 chr6 31214384 31214497 -158065057 + AluY SINE Alu 1 105 -206 2221 39 28 3 chr6 31214497 31214780 -158064774 + L1PA5 LINE L1 5865 6154 0 2071 68 65 0 chr6 31214780 31214945 -158064609 + AluY SINE Alu 105 297 -14 787 143 56 0 chr6 31215218 31215344 -158064210 + FLAM_C SINE Alu 1 133 0 2243 106 0 0 chr6 31215452 31215744 -158063810 + AluY SINE Alu 1 292 -19 1947 121 0 0 chr6 31217679 31217944 -158061610 + AluSx SINE Alu 40 304 -8 276 309 72 33 chr6 31218046 31218198 -158061356 + MIR3 SINE MIR 45 202 -6 187 338 14 0 chr6 31218261 31218332 -158061222 - MIR SINE MIR -7 255 184 1298 203 0 25 chr6 31218406 31218643 -158060911 + AluJo SINE Alu 15 245 -67 262 289 0 0 chr6 31218643 31218726 -158060828 - MER90 LTR ERV1 -492 83 1 1998 127 7 45 chr6 31219165 31219473 -158060081 - AluSx SINE Alu -16 296 1 1956 153 0 3 chr6 31219899 31220187 -158059367 - AluSx SINE Alu -25 287 1 200 128 0 26 chr6 31220513 31220552 -158059002 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 340 157 0 0 chr6 31220815 31220866 -158058688 + Alu SINE Alu 1 51 -249 1828 126 7 14 chr6 31220866 31221143 -158058411 + AluSx SINE Alu 25 299 -13 287 203 54 0 chr6 31221143 31221217 -158058337 - L1MC/D LINE L1 -1971 5837 5760 203 227 173 40 chr6 31221223 31221298 -158058256 - MIR3 SINE MIR -34 174 90 270 0 0 0 chr6 31221974 31222004 -158057550 + (TG)n Simple_repeat Simple_repeat 2 31 0 217 277 185 8 chr6 31223227 31223346 -158056208 - L2 LINE L2 0 3272 3133 224 313 45 0 chr6 31223841 31223908 -158055646 - MIR3 SINE MIR -49 159 90 362 211 9 0 chr6 31224574 31224688 -158054866 + (TG)n Simple_repeat Simple_repeat 2 116 0 9217 58 3 150 chr6 31225575 31227196 -158052358 - SVA Other Other -2 1384 2 2122 131 6 6 chr6 31227614 31227927 -158051627 + AluSq SINE Alu 1 313 0 183 175 53 0 chr6 31228733 31228790 -158050764 + (TAA)n Simple_repeat Simple_repeat 2 61 0 896 253 97 90 chr6 31229479 31229914 -158049640 - LTR16A1 LTR ERVL 0 457 20 833 232 51 0 chr6 31230042 31230219 -158049335 + MER5A DNA MER1_type 4 189 0 375 98 0 0 chr6 31230463 31230514 -158049040 + MER31B LTR ERV1 1 51 -415 432 209 0 44 chr6 31230514 31230605 -158048949 + MER21B LTR ERV1 1 87 -776 3463 227 47 14 chr6 31230626 31231393 -158048161 + MER21B LTR ERV1 18 809 -54 1024 219 214 11 chr6 31231414 31231770 -158047784 + MER31B LTR ERV1 39 466 0 1457 158 110 0 chr6 31232084 31232367 -158047187 + AluJb SINE Alu 1 311 0 2188 108 7 3 chr6 31233196 31233493 -158046061 + AluSx SINE Alu 1 298 -14 295 325 67 0 chr6 31234531 31234651 -158044903 - L2 LINE L2 -966 2348 2221 703 304 88 40 chr6 31235104 31235943 -158043611 + L1M4 LINE L1 2261 3139 -3007 253 265 24 0 chr6 31236208 31236291 -158043263 - MIR SINE MIR 0 262 178 8428 63 8 4 chr6 31236661 31237664 -158041890 - LTR13 LTR ERVK 0 1007 1 313 246 0 0 chr6 31237819 31237884 -158041670 - tRNA-Leu-CTT tRNA tRNA -20 65 1 231 114 0 0 chr6 31238959 31238994 -158040560 + (A)n Simple_repeat Simple_repeat 1 35 0 604 81 0 0 chr6 31239644 31239718 -158039836 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 428 86 0 0 chr6 31240190 31240248 -158039306 - AluSx SINE Alu -12 297 240 1501 101 5 0 chr6 31240248 31240447 -158039107 - AluSx SINE Alu -112 200 1 484 344 37 9 chr6 31240594 31240809 -158038745 + MIR SINE MIR 38 258 -4 418 209 47 85 chr6 31240876 31241000 -158038554 + LTR8 LTR ERV1 1 119 -572 2537 110 48 0 chr6 31241000 31241355 -158038199 + MER83 LTR ERV1 1 372 -76 1531 206 26 41 chr6 31241354 31241539 -158038015 + MLT1C LTR MaLR 86 272 -195 * 4446 119 29 39 chr6 31241539 31242237 -158037317 + LTR8 LTR ERV1 1 691 0 1531 206 26 41 chr6 31242237 31242439 -158037115 + MLT1C LTR MaLR 272 467 0 3031 178 71 26 chr6 31242671 31243335 -158036219 + LTR8A LTR ERV1 34 727 0 624 226 80 49 chr6 31243377 31243603 -158035951 + LTR16A1 LTR ERVL 116 348 -109 801 207 0 7 chr6 31243671 31243816 -158035738 - AluJb SINE Alu -35 277 134 2776 17 0 0 chr6 31243853 31244154 -158035400 + AluYa5 SINE Alu 1 301 -10 247 242 16 0 chr6 31244232 31244294 -158035260 + (TA)n Simple_repeat Simple_repeat 1 63 0 2653 208 30 113 chr6 31244298 31244857 -158034697 + L1M4 LINE L1 2759 3221 -2925 241 62 0 104 chr6 31244857 31244905 -158034649 + Alu SINE Alu 271 313 -7 2653 208 30 113 chr6 31244905 31245479 -158034075 + L1M4 LINE L1 3221 3841 -2305 540 242 25 8 chr6 31245502 31245705 -158033849 + L1M4 LINE L1 4369 4574 -1572 605 164 0 0 chr6 31245758 31245862 -158033692 - AluJb SINE Alu 0 312 209 850 304 46 38 chr6 31245870 31246265 -158033289 - MER70-int LTR ERVL -1878 3145 2748 912 220 35 4 chr6 31246266 31246498 -158033056 - L1M4 LINE L1 -1428 4718 4480 551 313 0 0 chr6 31246542 31246708 -158032846 - MER70-int LTR ERVL -2412 2611 2446 557 340 39 12 chr6 31246756 31247015 -158032539 + MER70-int LTR ERVL 562 827 -4196 309 213 62 0 chr6 31247356 31247436 -158032118 - MER70-int LTR ERVL -4457 566 482 934 202 11 0 chr6 31247500 31247683 -158031871 + MLT1D LTR MaLR 321 505 0 362 222 0 0 chr6 31247912 31247984 -158031570 - tRNA-Met-e tRNA tRNA -3 72 1 489 251 8 123 chr6 31248811 31248913 -158030641 - MIR SINE MIR -2 260 199 1416 87 5 5 chr6 31248913 31249098 -158030456 - L1PB1 LINE L1 -3 6148 5964 489 251 8 123 chr6 31249098 31249230 -158030324 - MIR SINE MIR -63 199 53 731 37 0 0 chr6 31250006 31250088 -158029466 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 367 322 157 36 chr6 31250497 31250860 -158028694 - L1MC4a LINE L1 -1908 5900 5494 304 345 24 43 chr6 31250874 31251083 -158028471 - MIR SINE MIR 0 262 58 1654 211 88 55 chr6 31251092 31251581 -158027973 + MLT1D LTR MaLR 1 505 0 22 56 0 0 chr6 31252458 31252494 -158027060 + AT_rich Low_complexity Low_complexity 1 36 0 349 242 161 16 chr6 31252666 31252790 -158026764 + L1M4 LINE L1 4222 4327 -1819 2286 108 0 9 chr6 31252790 31253105 -158026449 + AluSx SINE Alu 1 312 0 349 242 161 16 chr6 31253105 31253166 -158026388 + L1M4 LINE L1 4327 4434 -1712 614 95 0 0 chr6 31254085 31254159 -158025395 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 520 260 4 122 chr6 31254811 31255057 -158024497 - L2 LINE L2 -3 3310 3094 303 343 71 0 chr6 31255304 31255444 -158024110 + MIR SINE MIR 40 189 -73 1120 61 0 0 chr6 31256289 31256421 -158023133 - AluY SINE Alu -179 132 1 4170 164 8 29 chr6 31256657 31257426 -158022128 + L1MC3 LINE L1 6176 6928 -857 475 262 64 14 chr6 31257425 31257566 -158021988 - L1MEc LINE L1 -5990 406 259 * 42 0 0 0 chr6 31257605 31257647 -158021907 + AT_rich Low_complexity Low_complexity 1 42 0 2175 89 7 0 chr6 31257765 31258056 -158021498 - AluSx SINE Alu -19 293 1 4615 134 47 59 chr6 31258794 31260202 -158019352 + pTR5 LTR ERV1 743 2425 -13 198 242 136 0 chr6 31260335 31260401 -158019153 + L2 LINE L2 3208 3282 -31 571 143 209 0 chr6 31260492 31260583 -158018971 - FLAM_C SINE Alu -23 120 11 1967 133 27 7 chr6 31261262 31261556 -158017998 - AluSx SINE Alu -12 300 1 367 260 81 16 chr6 31261716 31261839 -158017715 + MIR SINE MIR 88 218 -44 186 43 0 0 chr6 31261847 31261870 -158017684 + (TTA)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 31262351 31262375 -158017179 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr6 31263215 31263238 -158016316 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 244 263 82 41 chr6 31263561 31263755 -158015799 - HAL1 LINE L1 0 2507 2306 1924 133 3 70 chr6 31263758 31264089 -158015465 - AluSx SINE Alu -3 309 1 227 294 0 59 chr6 31264256 31264296 -158015258 - HAL1 LINE L1 -326 2181 2140 1819 179 0 3 chr6 31264296 31264598 -158014956 - AluJb SINE Alu -11 301 1 227 294 0 59 chr6 31264598 31264659 -158014895 - HAL1 LINE L1 -367 2140 2086 495 239 158 65 chr6 31264660 31264907 -158014647 - HAL1 LINE L1 -538 1969 1700 772 242 199 26 chr6 31265367 31265554 -158014000 - HAL1 LINE L1 -805 1702 1549 270 0 0 0 chr6 31265554 31265584 -158013970 + (CA)n Simple_repeat Simple_repeat 2 31 0 772 242 199 26 chr6 31265584 31265813 -158013741 - HAL1 LINE L1 -958 1549 1214 312 70 0 0 chr6 31266106 31266149 -158013405 + (TG)n Simple_repeat Simple_repeat 2 44 0 1971 307 85 30 chr6 31266396 31267522 -158012032 - HAL1 LINE L1 -1319 1188 1 2327 85 0 0 chr6 31267556 31267850 -158011704 + AluSc SINE Alu 1 294 -15 204 324 0 14 chr6 31268043 31268114 -158011440 + L2 LINE L2 3244 3313 0 945 320 65 15 chr6 31268621 31269024 -158010530 + L2 LINE L2 2889 3311 -2 275 305 61 15 chr6 31269043 31269174 -158010380 + MER5A DNA MER1_type 7 143 -46 926 133 0 23 chr6 31269588 31269716 -158009838 + FLAM_C SINE Alu 3 127 -6 6110 154 51 7 chr6 31270500 31271607 -158007947 - L1MC1 LINE L1 0 6333 5180 212 59 29 0 chr6 31272362 31272396 -158007158 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 327 348 19 25 chr6 31273376 31273534 -158006020 + HERV16 LTR ERVL 4101 4257 -1397 849 329 54 14 chr6 31273679 31274105 -158005449 + HERV16 LTR ERVL 4557 4999 -765 360 0 0 0 chr6 31274113 31274153 -158005401 + (GAGAA)n Simple_repeat Simple_repeat 2 41 0 278 253 53 21 chr6 31274153 31274248 -158005306 + HERV16 LTR ERVL 4589 4686 -310 229 283 66 69 chr6 31274357 31274675 -158004879 + L1ME LINE L1 4903 5219 -927 480 245 14 68 chr6 31274678 31274825 -158004729 - MER69A DNA AcHobo 0 177 39 22 35 0 0 chr6 31274969 31274998 -158004556 + AT_rich Low_complexity Low_complexity 1 29 0 360 70 53 0 chr6 31275050 31275107 -158004447 + Alu SINE Alu 238 297 -3 957 315 51 31 chr6 31275417 31275963 -158003591 - LTR67 LTR ERVL 0 557 1 343 254 149 0 chr6 31276059 31276193 -158003361 + L1ME LINE L1 5665 5818 -352 2041 102 3 18 chr6 31276194 31276498 -158003056 + AluSg SINE Alu 1 300 0 22 0 0 0 chr6 31276543 31276565 -158002989 + AT_rich Low_complexity Low_complexity 1 22 0 895 191 0 24 chr6 31276687 31276855 -158002699 - AluJb SINE Alu -3 309 146 5060 130 32 1 chr6 31276855 31277734 -158001820 + L1MA4A LINE L1 5395 6300 -3 445 331 184 4 chr6 31277745 31278017 -158001537 - L2 LINE L2 -778 2536 2216 1639 65 69 48 chr6 31278234 31278465 -158001089 + AluY SINE Alu 58 293 -18 2317 111 3 0 chr6 31278632 31278938 -158000616 + AluSq SINE Alu 1 307 -6 232 302 198 17 chr6 31278977 31279093 -158000461 + MIR SINE MIR 16 152 -56 578 299 47 8 chr6 31279109 31279363 -158000191 - L1ME3A LINE L1 -11 6159 5896 203 189 0 0 chr6 31279365 31279402 -158000152 + T-rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr6 31280783 31280807 -157998747 + AT_rich Low_complexity Low_complexity 1 24 0 1090 228 135 17 chr6 31281818 31282174 -157997380 - L1ME3A LINE L1 -280 5890 5493 395 259 28 0 chr6 31282242 31282350 -157997204 + L1MC4a LINE L1 5451 5561 -2247 760 278 127 50 chr6 31282371 31283231 -157996323 + L1MC4a LINE L1 5693 6618 -1190 273 79 90 11 chr6 31283240 31283329 -157996225 + (TA)n Simple_repeat Simple_repeat 1 96 0 27 73 0 0 chr6 31283339 31283394 -157996160 + AT_rich Low_complexity Low_complexity 1 55 0 267 150 53 86 chr6 31283394 31283517 -157996037 + L1MC4a LINE L1 6595 6668 -1140 4769 130 79 14 chr6 31283517 31284293 -157995261 + LTR12 LTR ERV1 1 826 0 987 210 95 65 chr6 31284305 31284529 -157995025 + L1MC4 LINE L1 6733 6976 -1066 1208 126 239 8 chr6 31284529 31284768 -157994786 + AluSx SINE Alu 1 294 -8 987 210 95 65 chr6 31284768 31284943 -157994611 + L1MC4 LINE L1 6976 7144 -898 495 147 42 11 chr6 31284944 31285039 -157994515 + MIR SINE MIR 114 211 -51 775 188 46 130 chr6 31285774 31286035 -157993519 - MIR SINE MIR -21 241 3 479 286 64 7 chr6 31286375 31286515 -157993039 - MIR SINE MIR -30 232 85 2176 113 3 3 chr6 31286534 31286836 -157992718 + AluSq SINE Alu 1 302 -11 1016 269 83 16 chr6 31288228 31288779 -157990775 + L2 LINE L2 2577 3169 -144 993 263 16 31 chr6 31288836 31289091 -157990463 + MIR SINE MIR 12 262 0 527 229 37 0 chr6 31289100 31289209 -157990345 + L2 LINE L2 3190 3302 -11 193 194 0 0 chr6 31289209 31289245 -157990309 + L2 LINE L2 3278 3313 0 2081 102 39 7 chr6 31289324 31289608 -157989946 + AluSg SINE Alu 1 293 -17 2737 69 16 24 chr6 31289873 31290249 -157989305 + THE1C LTR MaLR 1 373 -2 2354 101 0 0 chr6 31290315 31290622 -157988932 + AluSx SINE Alu 2 308 -4 384 195 24 0 chr6 31290920 31291002 -157988552 - MER112 DNA MER1_type -175 85 2 1839 101 0 4 chr6 31291101 31291348 -157988206 - AluSx SINE Alu -3 309 64 200 266 89 65 chr6 31291644 31291768 -157987786 - MIR SINE MIR -24 238 112 771 284 13 0 chr6 31293296 31293451 -157986103 - L2 LINE L2 0 3272 3116 26 64 0 0 chr6 31294607 31294654 -157984900 + AT_rich Low_complexity Low_complexity 1 47 0 564 234 131 17 chr6 31295287 31295462 -157984092 - MIR3 SINE MIR -6 202 8 25 65 0 0 chr6 31295638 31295684 -157983870 + AT_rich Low_complexity Low_complexity 1 46 0 468 244 85 26 chr6 31295762 31296032 -157983522 - L1MC4a LINE L1 -1777 6031 5746 410 255 28 9 chr6 31297129 31297235 -157982319 + MER5A DNA MER1_type 31 138 -51 592 144 21 0 chr6 31297262 31297359 -157982195 + MER94 DNA DNA 1 99 -35 189 0 0 0 chr6 31298312 31298333 -157981221 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 199 235 0 39 chr6 31299384 31299435 -157980119 - L2 LINE L2 -7 3306 3258 272 319 60 118 chr6 31299974 31300595 -157978959 - L2 LINE L2 -573 2741 2157 2139 101 21 0 chr6 31300627 31300913 -157978641 - AluSp SINE Alu -21 292 1 2144 164 0 0 chr6 31301006 31301354 -157978200 + MER7A DNA MER2_type 1 346 0 212 347 0 25 chr6 31301412 31301533 -157978021 - L2 LINE L2 -1295 2019 1902 2025 88 66 4 chr6 31301618 31301891 -157977663 + AluSq SINE Alu 1 290 -23 183 241 0 56 chr6 31301909 31301948 -157977606 + L2 LINE L2 3212 3249 -23 15471 112 24 13 chr6 31301948 31303105 -157976449 + Tigger1 DNA MER2_type 1 1143 -1275 1703 154 4 4 chr6 31303105 31303388 -157976166 + AluJb SINE Alu 23 305 0 15471 112 24 13 chr6 31303388 31304620 -157974934 + Tigger1 DNA MER2_type 1143 2418 0 183 241 0 56 chr6 31304620 31304634 -157974920 + L2 LINE L2 3249 3262 -10 2806 231 43 69 chr6 31306495 31307930 -157971624 - L1MC5 LINE L1 -49 7912 6503 1569 213 13 16 chr6 31309560 31309870 -157969684 - AluJo SINE Alu -3 309 1 24 53 0 0 chr6 31310057 31310095 -157969459 + AT_rich Low_complexity Low_complexity 1 38 0 930 205 0 0 chr6 31310328 31310494 -157969060 + FRAM SINE Alu 1 164 -12 2321 75 0 0 chr6 31310496 31310801 -157968753 + AluY SINE Alu 1 305 0 801 81 0 0 chr6 31310802 31310913 -157968641 + L1MA1 LINE L1 6192 6302 0 669 182 9 0 chr6 31310970 31311080 -157968474 - FLAM_C SINE Alu -32 111 1 208 237 0 0 chr6 31311318 31311356 -157968198 - MIR SINE MIR -218 44 7 292 214 67 45 chr6 31311388 31311477 -157968077 - MIR SINE MIR -56 206 116 2527 33 10 3 chr6 31311641 31311940 -157967614 + AluY SINE Alu 1 301 -10 300 214 183 1 chr6 31312271 31312365 -157967189 + MER5A DNA MER1_type 62 189 0 261 313 184 6 chr6 31312625 31312788 -157966766 - MIR SINE MIR -50 212 21 900 274 35 52 chr6 31313527 31313852 -157965702 + L1ME LINE L1 205 524 -5546 2107 77 48 0 chr6 31313852 31314147 -157965407 + AluSq SINE Alu 1 308 0 900 274 35 52 chr6 31314147 31314221 -157965333 + L1ME LINE L1 524 598 -5472 350 284 114 34 chr6 31314446 31314622 -157964932 - L2 LINE L2 -92 3221 3032 1737 203 16 0 chr6 31314950 31315256 -157964298 + AluJb SINE Alu 2 312 0 189 340 117 25 chr6 31315290 31315452 -157964102 - MIR3 SINE MIR -29 179 3 1953 111 76 3 chr6 31315518 31315807 -157963747 - AluSg SINE Alu 0 310 1 1604 178 101 21 chr6 31315920 31316258 -157963296 + MLT1A1 LTR MaLR 1 365 0 1868 173 0 29 chr6 31316267 31316580 -157962974 - AluJo SINE Alu -8 304 1 201 175 0 0 chr6 31316594 31316634 -157962920 + CT-rich Low_complexity Low_complexity 2 41 0 3270 152 44 93 chr6 31316669 31317314 -157962240 + L1P4 LINE L1 4379 5054 -1112 853 88 0 0 chr6 31317314 31317428 -157962126 + AluY SINE Alu 191 304 -7 3270 152 44 93 chr6 31317428 31318173 -157961381 + L1P4 LINE L1 5054 5792 -374 1150 131 0 12 chr6 31318176 31318344 -157961210 - AluJo SINE Alu -146 166 1 291 29 0 0 chr6 31318406 31318441 -157961113 - U2 snRNA snRNA -153 35 1 214 297 0 0 chr6 31318446 31318520 -157961034 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 210 259 37 0 chr6 31320821 31320875 -157958679 - MIR SINE MIR -67 141 86 1656 201 60 52 chr6 31320890 31321337 -157958217 + MER74C LTR ERVL 10 460 0 181 286 33 77 chr6 31321337 31321428 -157958126 - MIR SINE MIR -173 89 3 822 229 0 7 chr6 31321948 31322101 -157957453 - FRAM SINE Alu -17 159 8 348 292 64 77 chr6 31322250 31322483 -157957071 - HAL1 LINE L1 -33 2474 2245 2236 99 0 0 chr6 31323069 31323381 -157956173 - AluSx SINE Alu 0 312 1 7649 50 5 0 chr6 31323627 31324899 -157954655 + L1PA6 LINE L1 4876 6151 -3 1046 248 58 62 chr6 31325174 31325768 -157953786 - MLT1H1 LTR MaLR -7 583 1 318 352 93 43 chr6 31326679 31327054 -157952500 + L2 LINE L2 2122 2515 -799 1320 281 115 25 chr6 31327136 31328499 -157951055 - L1MC/D LINE L1 -743 5403 4203 273 316 31 10 chr6 31329401 31329499 -157950055 - MIR3 SINE MIR -6 202 103 2538 26 0 51 chr6 31329763 31330075 -157949479 - AluY SINE Alu -15 296 1 877 179 0 148 chr6 31331425 31331682 -157947872 + MER20 DNA MER1_type 1 219 0 2063 145 3 0 chr6 31331807 31332118 -157947436 + AluSx SINE Alu 1 312 0 439 336 14 0 chr6 31332338 31332478 -157947076 - L2 LINE L2 -8 3305 3164 1409 127 38 5 chr6 31332479 31332691 -157946863 + AluJo SINE Alu 82 300 -12 378 304 44 39 chr6 31332703 31332907 -157946647 - L2 LINE L2 -158 3155 2951 2319 241 14 74 chr6 31332933 31333476 -157946078 - L2 LINE L2 -454 2860 2375 2289 107 0 0 chr6 31333476 31333774 -157945780 + AluSx SINE Alu 1 298 -14 2319 241 14 74 chr6 31333774 31334002 -157945552 - L2 LINE L2 -939 2375 2135 266 237 86 21 chr6 31334431 31334524 -157945030 - MIR SINE MIR -147 115 17 1509 171 27 8 chr6 31334956 31335214 -157944340 - AluJo SINE Alu -11 301 39 288 328 11 23 chr6 31335220 31335394 -157944160 + CT-rich Low_complexity Low_complexity 2 173 0 269 305 21 21 chr6 31335488 31335583 -157943971 - L2 LINE L2 -221 3051 2957 442 181 16 94 chr6 31336160 31336235 -157943319 + L1MC4 LINE L1 7860 7923 -119 2471 79 7 0 chr6 31336235 31336540 -157943014 + AluSg SINE Alu 1 307 -3 442 181 16 94 chr6 31336540 31336591 -157942963 + L1MC4 LINE L1 7923 7976 -66 243 336 86 52 chr6 31338362 31338478 -157941076 - L2 LINE L2 -14 3258 3139 199 378 54 0 chr6 31338927 31339038 -157940516 - MIR SINE MIR -62 146 30 411 293 81 7 chr6 31339051 31339216 -157940338 - MER5A DNA MER1_type -1 188 1 1449 229 36 22 chr6 31340668 31341031 -157938523 - MER87 LTR ERV1 0 541 174 2185 118 3 7 chr6 31341586 31341890 -157937664 + AluSc SINE Alu 1 303 -6 523 276 42 3 chr6 31342953 31343156 -157936398 - MIR SINE MIR -1 261 3 830 198 132 22 chr6 31344563 31344790 -157934764 + MIR SINE MIR 11 262 0 380 217 43 11 chr6 31345583 31345675 -157933879 + MIR SINE MIR 70 164 -98 2287 229 11 13 chr6 31347320 31347792 -157931762 + MER90 LTR ERV1 126 596 -18 887 165 203 5 chr6 31348663 31348871 -157930683 + LTR1 LTR ERV1 7 253 -532 4005 99 230 111 chr6 31348908 31350291 -157929263 + pTR5 LTR ERV1 743 2438 0 2610 113 56 30 chr6 31350341 31350767 -157928787 + LTR1 LTR ERV1 348 784 -1 669 214 69 0 chr6 31351862 31352007 -157927547 + MER5A DNA MER1_type 35 189 0 648 267 27 11 chr6 31353495 31353682 -157925872 + MIR SINE MIR 49 238 -24 235 287 104 26 chr6 31353704 31353819 -157925735 - MIR SINE MIR -67 141 18 395 303 20 20 chr6 31354976 31355128 -157924426 - L3 LINE CR1 -802 775 624 1652 185 0 3 chr6 31355512 31355799 -157923755 - AluJb SINE Alu -26 286 1 327 25 0 0 chr6 31356148 31356188 -157923366 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 111 0 0 chr6 31356475 31356502 -157923052 + (T)n Simple_repeat Simple_repeat 1 27 0 310 304 204 30 chr6 31356571 31356772 -157922782 + MIR SINE MIR 20 255 -7 326 214 40 56 chr6 31356932 31357058 -157922496 - L1MC5 LINE L1 -36 7925 7802 264 348 27 9 chr6 31357618 31357730 -157921824 - MIR3 SINE MIR -13 195 82 186 271 43 71 chr6 31358347 31358487 -157921067 + MIR SINE MIR 71 206 -56 235 298 0 0 chr6 31358853 31358936 -157920618 + MIR SINE MIR 30 111 -151 2333 101 0 3 chr6 31359177 31359475 -157920079 + AluSq SINE Alu 1 297 -16 338 223 106 0 chr6 31360391 31360485 -157919069 - MIR SINE MIR -80 182 79 21 0 0 0 chr6 31361221 31361242 -157918312 + AT_rich Low_complexity Low_complexity 1 21 0 3679 65 9 0 chr6 31361902 31362349 -157917205 + L1PA13 LINE L1 5710 6160 -3 246 282 87 34 chr6 31362396 31362626 -157916928 - L1ME LINE L1 -500 5621 5387 201 304 13 63 chr6 31363861 31363940 -157915614 + MIR SINE MIR 30 104 -104 214 157 206 69 chr6 31364065 31364167 -157915387 + MIR SINE MIR 86 201 -61 180 77 0 0 chr6 31364756 31364782 -157914772 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 449 261 117 50 chr6 31365514 31365694 -157913860 - MIR3 SINE MIR -6 202 11 3043 77 25 5 chr6 31366018 31366034 -157913520 - L1MA2 LINE L1 -15 6289 6275 768 52 0 0 chr6 31366034 31366131 -157913423 + (TA)n Simple_repeat Simple_repeat 1 97 0 3043 77 25 5 chr6 31366131 31366515 -157913039 - L1MA2 LINE L1 -29 6275 5881 23 0 0 0 chr6 31366926 31366949 -157912605 + AT_rich Low_complexity Low_complexity 1 23 0 1005 235 17 52 chr6 31366994 31367224 -157912330 + MER58A DNA MER1_type 1 222 -2 1698 94 0 9 chr6 31368425 31368676 -157910878 + AluSg/x SINE Alu 89 337 0 372 248 60 54 chr6 31368676 31368825 -157910729 + MER5B DNA MER1_type 29 178 0 319 274 59 10 chr6 31368853 31368955 -157910599 + MIR SINE MIR 39 145 -63 247 386 71 0 chr6 31369941 31370068 -157909486 - L2 LINE L2 0 3272 3137 1894 152 3 23 chr6 31370083 31370392 -157909162 + AluJo SINE Alu 1 303 -9 454 141 0 13 chr6 31370582 31370660 -157908894 + AluJ/FRAM SINE Alu 227 303 -9 946 291 67 35 chr6 31372329 31372700 -157906854 + LTR16A LTR ERVL 66 448 -2 1004 333 62 21 chr6 31372703 31373174 -157906380 + HERV16 LTR ERVL 2 491 -4505 1082 203 13 22 chr6 31373180 31373412 -157906142 + AluJo SINE Alu 8 237 -75 874 283 61 19 chr6 31373610 31373971 -157905583 + HERV16 LTR ERVL 913 1288 -3708 22 0 0 0 chr6 31374001 31374023 -157905531 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 31374110 31374132 -157905422 + AT_rich Low_complexity Low_complexity 1 22 0 246 163 10 9 chr6 31375198 31375401 -157904153 + AluJb SINE Alu 1 293 -9 1938 153 0 16 chr6 31376108 31376416 -157903138 - AluSx SINE Alu -9 303 1 1044 256 41 93 chr6 31376416 31376931 -157902623 + MLT1H LTR MaLR 62 549 0 21 0 0 0 chr6 31377371 31377392 -157902162 + AT_rich Low_complexity Low_complexity 1 21 0 1068 266 102 16 chr6 31377702 31378328 -157901226 + HAL1 LINE L1 1533 2242 -265 348 163 113 12 chr6 31378363 31378443 -157901111 + L1M4b LINE L1 31 118 -6741 1444 124 5 0 chr6 31378446 31378648 -157900906 + AluSg SINE Alu 2 204 -106 420 256 70 74 chr6 31378648 31378948 -157900606 + L1ME2 LINE L1 5858 6155 -9 1678 119 0 20 chr6 31379069 31379321 -157900233 - AluSc SINE Alu -5 304 58 307 331 39 13 chr6 31379335 31379489 -157900065 - L1M4 LINE L1 -2619 3527 3370 651 14 0 0 chr6 31380365 31380437 -157899117 - tRNA-Arg-CGA tRNA tRNA -4 72 1 221 297 130 29 chr6 31380527 31380665 -157898889 - MIR SINE MIR -94 168 17 322 148 0 33 chr6 31381732 31381793 -157897761 + FLAM_A SINE Alu 1 54 -77 239 200 0 33 chr6 31381793 31381853 -157897701 + G-rich Low_complexity Low_complexity 3 60 0 367 124 41 113 chr6 31381860 31381957 -157897597 + FLAM_A SINE Alu 39 128 -5 638 317 99 16 chr6 31381994 31382669 -157896885 + L1M4 LINE L1 3347 4077 -2069 32 26 0 0 chr6 31382806 31382845 -157896709 + AT_rich Low_complexity Low_complexity 1 39 0 279 266 18 18 chr6 31383211 31383320 -157896234 - L1ME3A LINE L1 -5 6165 6057 1194 245 34 41 chr6 31383392 31383808 -157895746 - L1ME3A LINE L1 -112 6058 5646 307 255 49 20 chr6 31383811 31383913 -157895641 + LTR52 LTR ERVL 4 108 -313 1556 129 129 6 chr6 31383913 31384246 -157895308 - L1 LINE L1 -1556 4654 4281 * 6182 112 9 25 chr6 31384245 31385454 -157894100 + L1PB1 LINE L1 4975 6151 0 4397 166 33 1 chr6 31385459 31386333 -157893221 - L1 LINE L1 -1919 4291 3390 2021 200 32 36 chr6 31386344 31386838 -157892716 - MER21B LTR ERV1 -3 860 394 2844 229 70 18 chr6 31386876 31387776 -157891778 + MSTD-int LTR MaLR 740 1735 0 1884 196 12 53 chr6 31387776 31388189 -157891365 + MSTD LTR MaLR 1 396 0 1624 253 11 2 chr6 31388190 31388653 -157890901 - L1 LINE L1 -4716 1425 959 1492 220 13 5 chr6 31388668 31389064 -157890490 + L1MC3 LINE L1 2673 3071 -3075 301 180 0 0 chr6 31389062 31389123 -157890431 - L1M4 LINE L1 -1390 4756 4696 * 23 0 0 0 chr6 31389168 31389191 -157890363 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr6 31389301 31389326 -157890228 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 357 0 0 chr6 31389393 31389463 -157890091 + MIR3 SINE MIR 120 189 -19 876 181 38 5 chr6 31390020 31390230 -157889324 + L1MC3 LINE L1 4684 4900 -1246 1616 176 17 59 chr6 31390235 31390644 -157888910 + L1MC3 LINE L1 5639 6030 -1755 441 298 6 17 chr6 31390730 31390911 -157888643 + GA-rich Low_complexity Low_complexity 2 180 0 416 221 84 26 chr6 31390942 31391096 -157888458 + LTR41 LTR ERVL 1 163 -610 2739 162 106 4 chr6 31391178 31391726 -157887828 + LTR31 LTR ERV1 1 604 -15 456 205 168 31 chr6 31391966 31392129 -157887425 + LTR41 LTR ERVL 587 792 -3 300 211 0 21 chr6 31392838 31392933 -157886621 + L1MA4 LINE L1 6204 6296 -4 1239 159 155 65 chr6 31393023 31393153 -157886401 - AluJb SINE Alu 0 302 185 2122 113 0 7 chr6 31393153 31393444 -157886110 - AluSx SINE Alu 0 312 24 1239 159 155 65 chr6 31393444 31393590 -157885964 - AluJb SINE Alu -117 185 1 273 172 126 0 chr6 31393811 31393898 -157885656 - L1MC4a LINE L1 -1851 5957 5860 1217 260 42 82 chr6 31393898 31394425 -157885129 - L2 LINE L2 -4 3309 2804 2081 115 0 7 chr6 31394683 31394970 -157884584 + AluSg SINE Alu 1 285 -25 2231 67 0 76 chr6 31394981 31395309 -157884245 + AluY SINE Alu 3 305 -6 22 35 0 0 chr6 31395311 31395340 -157884214 + AT_rich Low_complexity Low_complexity 1 29 0 342 296 197 7 chr6 31396065 31396217 -157883337 + MER5A DNA MER1_type 9 189 0 710 168 156 42 chr6 31396225 31396249 -157883305 - MER5A DNA MER1_type 0 189 169 1860 188 37 0 chr6 31396249 31396601 -157882953 + MLT1A1 LTR MaLR 1 365 0 710 168 156 42 chr6 31396601 31396743 -157882811 - MER5A DNA MER1_type -20 169 4 215 195 0 0 chr6 31397629 31397670 -157881884 + L2 LINE L2 3272 3312 -1 273 321 44 44 chr6 31397677 31397814 -157881740 + L2 LINE L2 1784 1920 -1394 270 234 78 0 chr6 31397822 31397899 -157881655 - MLT1K LTR MaLR 0 588 506 2278 89 0 46 chr6 31398779 31399103 -157880451 - AluSg1 SINE Alu 0 309 1 21 57 0 0 chr6 31399658 31399693 -157879861 + AT_rich Low_complexity Low_complexity 1 35 0 2004 135 30 3 chr6 31399990 31400286 -157879268 - AluSc SINE Alu -5 304 1 257 299 64 67 chr6 31400930 31401274 -157878280 + MLT1L LTR MaLR 129 471 -144 301 264 203 28 chr6 31401356 31401538 -157878016 - HAL1 LINE L1 -1191 1316 1103 24 32 0 0 chr6 31401556 31401587 -157877967 + AT_rich Low_complexity Low_complexity 1 31 0 329 248 55 37 chr6 31401835 31401944 -157877610 - L1ME3A LINE L1 -241 5929 5819 329 207 60 66 chr6 31401944 31402097 -157877457 - L1ME3 LINE L1 -2 6332 6019 666 279 142 38 chr6 31402103 31402500 -157877054 - L1ME3 LINE L1 -346 5824 5470 1763 118 118 0 chr6 31402500 31402763 -157876791 - AluSx SINE Alu -18 294 1 666 279 142 38 chr6 31402763 31403385 -157876169 - L1ME3 LINE L1 -700 5470 4690 1929 199 7 17 chr6 31403523 31403936 -157875618 + LTR2 LTR ERV1 41 449 0 34 24 0 0 chr6 31403936 31403977 -157875577 + AT_rich Low_complexity Low_complexity 1 41 0 861 207 0 0 chr6 31403984 31404129 -157875425 - FRAM SINE Alu -31 145 1 1702 196 68 27 chr6 31404196 31404635 -157874919 - LTR2B LTR ERV1 0 490 34 2320 108 3 0 chr6 31405155 31405461 -157874093 + AluSg SINE Alu 1 307 -3 2057 138 0 0 chr6 31408282 31408573 -157870981 + AluSx SINE Alu 1 291 -21 202 151 164 0 chr6 31408851 31408924 -157870630 - MER5C DNA MER1_type -112 212 128 226 317 40 40 chr6 31409251 31409575 -157869979 - Charlie3 DNA MER1_type -320 2390 2107 489 356 18 22 chr6 31409741 31410595 -157868959 - Charlie1 DNA MER1_type -812 1949 1102 34 42 0 0 chr6 31411166 31411214 -157868340 + AT_rich Low_complexity Low_complexity 1 48 0 455 237 79 0 chr6 31411427 31411541 -157868013 - MER5C DNA MER1_type -200 124 2 2083 149 0 13 chr6 31413513 31413814 -157865740 - AluSx SINE Alu -15 297 1 1128 68 0 0 chr6 31414028 31414160 -157865394 - AluYb8 SINE Alu -186 132 1 4475 144 52 11 chr6 31414633 31415385 -157864169 + LTR39 LTR ERV1 1 783 0 974 83 0 0 chr6 31417015 31417136 -157862418 + AluSq/x SINE Alu 1 121 -191 1956 118 40 40 chr6 31417411 31417708 -157861846 + AluSx SINE Alu 2 298 -14 1904 170 0 3 chr6 31418305 31418605 -157860949 + AluJb SINE Alu 1 299 -13 342 286 71 92 chr6 31418688 31419171 -157860383 - MLT1L LTR MaLR -35 580 3 1460 115 50 0 chr6 31419399 31419617 -157859937 - MER30 DNA MER1_type 0 230 2 2292 91 0 7 chr6 31419890 31420199 -157859355 + AluSc SINE Alu 1 307 -2 2069 73 37 0 chr6 31420361 31420655 -157858899 + AluY SINE Alu 1 304 0 242 272 0 11 chr6 31421419 31421524 -157858030 - Tigger1 DNA MER2_type -942 1476 1291 261 291 37 30 chr6 31421922 31422056 -157857498 - Tigger7 DNA MER2_type -1550 937 803 430 254 77 41 chr6 31423075 31423244 -157856310 - MIR SINE MIR -45 217 43 210 295 123 41 chr6 31424965 31425108 -157854446 - MIR SINE MIR -21 187 32 403 307 85 11 chr6 31426101 31426290 -157853264 + MER69 DNA AcHobo 1 203 -2323 383 160 100 60 chr6 31426296 31426396 -157853158 + MER69 DNA AcHobo 2421 2524 -2 671 28 0 0 chr6 31426629 31426701 -157852853 + tRNA-Gln-CAA tRNA tRNA 1 72 -3 225 119 0 0 chr6 31427082 31427124 -157852430 + (T)n Simple_repeat Simple_repeat 1 42 0 781 206 71 139 chr6 31428639 31429028 -157850526 + MER31B LTR ERV1 3 466 0 6274 152 34 45 chr6 31429204 31430644 -157848910 + L1MA6 LINE L1 3840 5295 -1005 2360 78 0 3 chr6 31430644 31430940 -157848614 + AluSx SINE Alu 2 296 -16 1658 153 3 55 chr6 31430941 31431267 -157848287 - AluJo SINE Alu 0 312 4 6274 152 34 45 chr6 31431267 31431623 -157847931 + L1MA6 LINE L1 5295 5654 -646 2027 137 17 0 chr6 31431623 31431915 -157847639 + AluSq SINE Alu 1 297 -16 6274 152 34 45 chr6 31431915 31432252 -157847302 + L1MA6 LINE L1 5654 6113 -187 1166 206 118 7 chr6 31432329 31432645 -157846909 + AluJb SINE Alu 1 346 0 2299 101 3 0 chr6 31432691 31432999 -157846555 + AluSq SINE Alu 1 309 -4 223 313 6 106 chr6 31433058 31433218 -157846336 - MER5A DNA MER1_type -24 165 22 981 270 112 53 chr6 31433218 31433873 -157845681 + L1MC4a LINE L1 5501 6193 -1615 784 0 0 0 chr6 31434590 31434672 -157844882 - tRNA-Ser-AGC tRNA tRNA -3 82 1 223 261 120 11 chr6 31435386 31435478 -157844076 + MIR SINE MIR 35 136 -126 1733 134 47 0 chr6 31435859 31435934 -157843620 + AluSx SINE Alu 47 117 -195 405 0 0 0 chr6 31435934 31435979 -157843575 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1733 134 47 0 chr6 31435979 31436157 -157843397 + AluSx SINE Alu 117 312 0 2819 214 51 53 chr6 31436158 31436685 -157842869 + L1MC/D LINE L1 4275 4801 -1543 2258 138 76 9 chr6 31436685 31437026 -157842528 + THE1B LTR MaLR 1 364 0 2819 214 51 53 chr6 31437026 31437601 -157841953 + L1MC/D LINE L1 4801 5436 -908 1815 157 20 10 chr6 31437605 31437898 -157841656 + AluSx SINE Alu 5 300 -12 405 238 27 27 chr6 31437899 31438084 -157841470 + L1MC5 LINE L1 7506 7690 -271 321 26 0 0 chr6 31438112 31438150 -157841404 - MER4D LTR ERV1 -74 798 761 2454 56 0 13 chr6 31438150 31438455 -157841099 - AluY SINE Alu -10 301 1 614 229 65 19 chr6 31438465 31438679 -157840875 + L1MC5 LINE L1 7689 7912 -49 1657 166 18 22 chr6 31438790 31439067 -157840487 - AluSg SINE Alu -32 278 3 37 0 0 0 chr6 31439366 31439403 -157840151 + AT_rich Low_complexity Low_complexity 1 37 0 2061 129 7 0 chr6 31439463 31439758 -157839796 - AluSx SINE Alu -15 297 1 2452 47 23 10 chr6 31440207 31440508 -157839046 - AluY SINE Alu -6 305 1 28 0 0 0 chr6 31440508 31440536 -157839018 + AT_rich Low_complexity Low_complexity 1 28 0 240 278 52 0 chr6 31440538 31440635 -157838919 - L1M2 LINE L1 -4326 2523 2422 319 277 78 41 chr6 31440660 31440902 -157838652 - L1MDa LINE L1 -4749 1380 1130 313 220 0 0 chr6 31440978 31441037 -157838517 - MLT1E1 LTR MaLR -3 651 593 822 253 100 29 chr6 31441142 31441453 -157838101 - MLT1H LTR MaLR -226 369 1 443 329 69 32 chr6 31441459 31441585 -157837969 - L1MDa LINE L1 -5046 1073 953 2283 104 3 0 chr6 31441585 31441884 -157837670 + AluSx SINE Alu 1 300 -12 443 329 69 32 chr6 31441884 31442250 -157837304 - L1MDa LINE L1 -5166 953 563 260 315 87 0 chr6 31442692 31442784 -157836770 + L1MC4 LINE L1 7436 7535 -507 37069 126 12 13 chr6 31442813 31445873 -157833681 - HERVK LTR ERVK -597 6820 3883 5262 144 36 42 chr6 31445873 31446848 -157832706 - LTR5 LTR ERVK 0 969 1 37069 126 12 13 chr6 31446848 31449998 -157829556 - HERVK LTR ERVK -3534 3883 733 5126 119 17 4 chr6 31450071 31450818 -157828736 - HERVK LTR ERVK -6486 757 1 3588 143 48 98 chr6 31450820 31451639 -157827915 - LTR5 LTR ERVK -2 967 190 22 0 0 0 chr6 31452552 31452574 -157826980 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr6 31452918 31452947 -157826607 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1932 138 18 0 chr6 31452949 31453225 -157826329 - AluSx SINE Alu -31 281 1 255 228 51 0 chr6 31454198 31454277 -157825277 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 21 36 0 0 chr6 31454406 31454434 -157825120 + AT_rich Low_complexity Low_complexity 1 28 0 6086 120 32 57 chr6 31454575 31455652 -157823902 + L1MA3 LINE L1 5255 6305 0 262 111 0 0 chr6 31455893 31455929 -157823625 - MLT1F LTR MaLR 0 542 507 350 250 42 10 chr6 31456028 31456098 -157823456 + L1MC5 LINE L1 7810 7885 -76 2001 131 7 0 chr6 31456098 31456396 -157823158 - AluSx SINE Alu -12 300 1 350 250 42 10 chr6 31456396 31456421 -157823133 + L1MC5 LINE L1 7885 7908 -53 1189 217 53 38 chr6 31456470 31456811 -157822743 + L1M4 LINE L1 3436 3781 -2365 337 129 75 54 chr6 31456818 31456911 -157822643 + L1MC1 LINE L1 6239 6333 0 1347 184 76 17 chr6 31457128 31457291 -157822263 - AluJb SINE Alu -7 305 153 438 20 0 0 chr6 31457291 31457342 -157822212 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 31457342 31457466 -157822088 - AluJb SINE Alu -159 153 1 2467 50 3 31 chr6 31457735 31458052 -157821502 - AluY SINE Alu -3 308 1 207 0 0 0 chr6 31458203 31458226 -157821328 + (T)n Simple_repeat Simple_repeat 1 23 0 6497 144 19 29 chr6 31458230 31459465 -157820089 - L1MC1 LINE L1 -12 6321 5101 683 0 0 0 chr6 31460322 31460394 -157819160 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 814 143 0 0 chr6 31461093 31461219 -157818335 + AluSg/x SINE Alu 141 266 -44 721 128 0 10 chr6 31461577 31461679 -157817875 + AluSq SINE Alu 129 229 -84 1969 113 27 14 chr6 31462437 31462729 -157816825 - AluSc SINE Alu -11 298 3 1742 171 26 19 chr6 31462761 31463071 -157816483 + AluJb SINE Alu 1 312 0 869 181 0 0 chr6 31463080 31463207 -157816347 + FLAM_C SINE Alu 1 127 -6 2118 98 10 16 chr6 31463276 31463581 -157815973 + AluSp SINE Alu 1 303 -10 419 358 7 7 chr6 31463657 31463805 -157815749 + L2 LINE L2 678 825 -2489 630 311 44 20 chr6 31463868 31464119 -157815435 + MIR SINE MIR 2 258 -4 2554 72 3 0 chr6 31464132 31464438 -157815116 + AluSp SINE Alu 1 307 -6 2192 113 3 3 chr6 31464438 31464749 -157814805 + AluSq SINE Alu 1 311 -2 2337 170 60 32 chr6 31464902 31465366 -157814188 - MLT1D LTR MaLR -28 477 1 273 309 24 0 chr6 31465989 31466073 -157813481 - MIR3 SINE MIR -27 181 96 220 315 145 21 chr6 31466079 31466314 -157813240 + L2 LINE L2 1246 1509 -1805 312 226 0 118 chr6 31466398 31466434 -157813120 - MER5A DNA MER1_type -88 101 62 2200 123 3 0 chr6 31466434 31466742 -157812812 - AluSg SINE Alu -1 309 1 312 226 0 118 chr6 31466742 31466807 -157812747 - MER5A DNA MER1_type -127 62 12 549 358 118 16 chr6 31466858 31467553 -157812001 + L2 LINE L2 1567 2332 -982 2269 85 16 0 chr6 31467776 31468082 -157811472 + AluY SINE Alu 1 311 0 485 273 13 33 chr6 31468157 31468307 -157811247 - L2 LINE L2 -876 2438 2292 1147 207 76 32 chr6 31468368 31468562 -157810992 - MER101B LTR ERV1 -144 416 232 1978 65 0 4 chr6 31468562 31468810 -157810744 - AluY SINE Alu -3 308 62 1147 207 76 32 chr6 31468810 31468994 -157810560 - MER101B LTR ERV1 -328 232 26 482 242 32 8 chr6 31469142 31469266 -157810288 - L2 LINE L2 -3 3310 3184 386 279 54 54 chr6 31469235 31469382 -157810172 + L2 LINE L2 2563 2709 -605 * 1727 86 86 19 chr6 31469389 31469523 -157810031 + AluSx SINE Alu 2 126 -186 2288 95 16 3 chr6 31469523 31469827 -157809727 + AluSq SINE Alu 1 308 -5 1727 86 86 19 chr6 31469827 31469959 -157809595 + AluSx SINE Alu 126 286 -26 27 29 0 0 chr6 31469959 31469993 -157809561 + AT_rich Low_complexity Low_complexity 1 34 0 454 286 112 6 chr6 31470024 31470185 -157809369 - MLT1L LTR MaLR -4 611 434 2303 108 3 0 chr6 31470532 31470838 -157808716 - AluSx SINE Alu -5 307 1 607 189 213 37 chr6 31470851 31471015 -157808539 + MER41D LTR ERV1 365 557 0 309 347 28 34 chr6 31471115 31471291 -157808263 - MLT1L LTR MaLR -285 330 156 824 282 82 68 chr6 31471318 31471565 -157807989 + MER20B DNA MER1_type 44 286 -497 2342 76 0 13 chr6 31471565 31471866 -157807688 - AluSx SINE Alu -15 297 1 824 282 82 68 chr6 31471866 31471969 -157807585 + MER20B DNA MER1_type 286 386 -397 1959 95 77 0 chr6 31471969 31472242 -157807312 + AluSg SINE Alu 2 295 -15 824 282 82 68 chr6 31472242 31472401 -157807153 + MER20B DNA MER1_type 386 561 -222 529 270 0 45 chr6 31472445 31472667 -157806887 + MER20B DNA MER1_type 569 780 -3 959 147 76 76 chr6 31473566 31473700 -157805854 - MLT2D LTR ERVL -151 263 127 1741 147 47 0 chr6 31473700 31473979 -157805575 - AluSx SINE Alu -20 292 1 959 147 76 76 chr6 31473979 31474055 -157805499 - MLT2D LTR ERVL -286 128 53 358 185 0 0 chr6 31474090 31474155 -157805399 - MLT2D LTR ERVL -399 65 1 688 249 76 10 chr6 31474156 31474353 -157805201 - L1MEc LINE L1 -6143 253 44 482 161 117 0 chr6 31474736 31474838 -157804716 - MLT1A2 LTR MaLR -2 372 274 22 35 0 0 chr6 31475832 31475861 -157803693 + AT_rich Low_complexity Low_complexity 1 29 0 622 56 0 0 chr6 31475921 31475993 -157803561 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 1739 92 0 0 chr6 31476149 31476376 -157803178 + AluSq SINE Alu 85 311 -2 21 36 0 0 chr6 31478261 31478289 -157801265 + AT_rich Low_complexity Low_complexity 1 28 0 2421 64 10 0 chr6 31479247 31479542 -157800012 - AluY SINE Alu -13 298 1 7677 120 29 35 chr6 31479561 31479833 -157799721 - Tigger3b DNA MER2_type -1797 1231 959 1485 164 12 0 chr6 31479833 31480083 -157799471 + AluJb SINE Alu 1 253 -59 7677 120 29 35 chr6 31480083 31480382 -157799172 - Tigger3b DNA MER2_type -2069 959 660 2242 103 0 31 chr6 31480382 31480701 -157798853 + AluSx SINE Alu 1 309 -3 7677 120 29 35 chr6 31480701 31481366 -157798188 - Tigger3b DNA MER2_type -2368 660 1 2568 154 22 46 chr6 31482677 31482971 -157796583 - MLT1C LTR MaLR 0 467 186 2285 78 3 10 chr6 31482971 31483264 -157796290 - AluSq SINE Alu -20 293 3 2568 154 22 46 chr6 31483264 31483429 -157796125 - MLT1C LTR MaLR -281 186 19 1090 134 32 0 chr6 31483710 31483867 -157795687 + THE1C LTR MaLR 1 162 -213 2474 85 0 0 chr6 31483869 31484174 -157795380 - AluSx SINE Alu -7 305 1 228 354 0 0 chr6 31484448 31484530 -157795024 + L2 LINE L2 3221 3302 -11 635 54 0 0 chr6 31485949 31486023 -157793531 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 275 237 169 34 chr6 31486384 31486561 -157792993 - MIR SINE MIR -13 249 49 21 0 0 0 chr6 31486613 31486634 -157792920 + AT_rich Low_complexity Low_complexity 1 21 0 181 372 21 11 chr6 31488490 31488584 -157790970 + MIR3 SINE MIR 15 109 -99 27 49 0 0 chr6 31488611 31488652 -157790902 + AT_rich Low_complexity Low_complexity 1 41 0 203 125 25 0 chr6 31488716 31488756 -157790798 + (TA)n Simple_repeat Simple_repeat 1 41 0 190 140 20 20 chr6 31488838 31488888 -157790666 + (TA)n Simple_repeat Simple_repeat 2 51 0 195 100 0 0 chr6 31488915 31488945 -157790609 + (CA)n Simple_repeat Simple_repeat 2 31 0 2341 107 0 0 chr6 31488973 31489282 -157790272 + AluSg SINE Alu 2 310 0 3161 199 126 3 chr6 31489284 31489989 -157789565 - L1MC4 LINE L1 -161 7881 7090 2401 49 39 0 chr6 31490056 31490342 -157789212 + AluY SINE Alu 1 297 -14 415 31 21 62 chr6 31490342 31490438 -157789116 + (TA)n Simple_repeat Simple_repeat 2 93 0 659 28 0 0 chr6 31490713 31490785 -157788769 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1104 213 5 0 chr6 31491396 31491584 -157787970 + MER5A DNA MER1_type 1 189 0 2338 95 0 3 chr6 31491620 31491925 -157787629 - AluSq SINE Alu -9 304 1 1427 164 188 33 chr6 31492548 31492849 -157786705 + MSTA LTR MaLR 2 371 -57 2494 46 0 7 chr6 31492849 31493152 -157786402 + AluY SINE Alu 4 304 -7 1427 164 188 33 chr6 31493152 31493217 -157786337 + MSTA LTR MaLR 371 425 -3 2440 90 3 0 chr6 31493507 31493818 -157785736 - AluSx SINE Alu 0 312 1 6930 142 119 86 chr6 31493923 31495566 -157783988 + pTR5 LTR ERV1 742 2438 0 1661 189 20 0 chr6 31495697 31495999 -157783555 - AluSx SINE Alu 0 312 5 5985 157 43 54 chr6 31496072 31497293 -157782261 + L1MC1 LINE L1 4 1210 -5216 4999 139 27 13 chr6 31497290 31498118 -157781436 + L1MC1 LINE L1 5644 6482 -131 * 199 324 74 19 chr6 31499759 31499867 -157779687 - L2 LINE L2 -25 3247 3134 495 155 0 0 chr6 31500078 31500149 -157779405 + tRNA-Ala-GCG tRNA tRNA 3 73 -2 255 288 61 0 chr6 31501457 31501523 -157778031 + tRNA-Ala-GCG tRNA tRNA 3 72 -3 2127 100 0 4 chr6 31502040 31502355 -157777199 - AluSc SINE Alu 0 314 1 2223 109 0 7 chr6 31502492 31502794 -157776760 - AluSx SINE Alu -12 300 1 2717 108 17 6 chr6 31503355 31503715 -157775839 - THE1B LTR MaLR 0 364 1 731 156 0 64 chr6 31503797 31503938 -157775616 - FLAM_A SINE Alu -1 132 1 2068 154 0 0 chr6 31504011 31504322 -157775232 - AluSx SINE Alu -1 311 1 254 235 0 0 chr6 31504435 31504486 -157775068 + (CAT)n Simple_repeat Simple_repeat 2 52 0 38 39 0 0 chr6 31504541 31504593 -157774961 + AT_rich Low_complexity Low_complexity 1 52 0 2444 69 0 7 chr6 31504616 31504921 -157774633 - AluY SINE Alu -8 303 1 2136 198 58 22 chr6 31505020 31505465 -157774089 + MLT2B1 LTR ERVL 10 470 -50 243 192 17 50 chr6 31505476 31505596 -157773958 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 228 106 191 0 chr6 31505596 31505643 -157773911 + MLT2B1 LTR ERVL 460 515 0 2154 130 0 0 chr6 31505781 31506081 -157773473 + AluSg SINE Alu 1 300 -10 4264 129 28 43 chr6 31506095 31506838 -157772716 - L1MA10 LINE L1 -7 6327 5596 45724 31 1 2 chr6 31506839 31512986 -157766568 - L1PA3 LINE L1 -3 6152 15 1969 143 12 58 chr6 31512982 31513445 -157766109 - L1MA10 LINE L1 -548 5620 5169 * 335 286 120 17 chr6 31513447 31513622 -157765932 - L1ME LINE L1 -680 5490 5298 995 274 47 89 chr6 31513722 31513930 -157765624 + LTR16A LTR ERVL 1 216 -234 2145 90 36 0 chr6 31513930 31514207 -157765347 - AluSp SINE Alu -26 287 1 995 274 47 89 chr6 31514207 31514422 -157765132 + LTR16A LTR ERVL 216 407 -43 1808 119 45 45 chr6 31514422 31514739 -157764815 + AluSx SINE Alu 2 318 0 995 274 47 89 chr6 31514739 31514782 -157764772 + LTR16A LTR ERVL 407 450 0 251 182 15 15 chr6 31514888 31514954 -157764600 + (TA)n Simple_repeat Simple_repeat 2 67 0 1185 201 55 4 chr6 31514961 31515229 -157764325 - MER21B LTR ERV1 -539 324 19 245 307 93 0 chr6 31515226 31515301 -157764253 - MER21B LTR ERV1 -756 107 26 * 205 240 27 0 chr6 31515320 31515395 -157764159 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 1643 134 55 31 chr6 31515410 31515701 -157763853 - AluJo SINE Alu -8 304 7 5232 84 8 1 chr6 31515769 31516425 -157763129 + PABL_A LTR ERV1 1 660 0 1208 143 123 25 chr6 31516661 31516882 -157762672 + AluJb SINE Alu 1 199 -113 201 74 0 0 chr6 31516882 31516909 -157762645 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1933 107 0 26 chr6 31516909 31517181 -157762373 + AluSx SINE Alu 1 265 -47 1208 143 123 25 chr6 31517181 31517202 -157762352 + AluJb SINE Alu 198 268 -44 245 29 0 29 chr6 31517212 31517247 -157762307 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1037 129 48 47 chr6 31517332 31517661 -157761893 + LTR35 LTR ERV1 1 390 -228 11089 175 60 75 chr6 31517794 31518612 -157760942 - MER109 Unknown Unknown -309 2123 1294 2080 102 46 0 chr6 31518612 31518896 -157760658 - AluSx SINE Alu -13 299 3 11089 175 60 75 chr6 31518896 31519471 -157760083 - MER109 Unknown Unknown -1138 1294 712 2281 119 0 0 chr6 31519471 31519773 -157759781 + AluSx SINE Alu 7 308 -4 11089 175 60 75 chr6 31519773 31519967 -157759587 - MER109 Unknown Unknown -1720 712 517 2352 97 3 3 chr6 31519967 31520276 -157759278 + AluSq SINE Alu 2 310 -3 11089 175 60 75 chr6 31520276 31521896 -157757658 - MER109 Unknown Unknown -1915 517 767 2110 107 3 10 chr6 31521896 31522205 -157757349 + AluY SINE Alu 5 311 0 11089 175 60 75 chr6 31522205 31522962 -157756592 - MER109 Unknown Unknown -1664 768 1 273 302 62 16 chr6 31522956 31523085 -157756469 - MER109 Unknown Unknown -1829 603 469 * 186 43 0 0 chr6 31523662 31523685 -157755869 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 2316 85 14 3 chr6 31523696 31523990 -157755564 - AluSq SINE Alu -16 297 1 1261 156 10 0 chr6 31524079 31524284 -157755270 - AluSq SINE Alu -104 209 3 411 231 124 18 chr6 31524294 31524463 -157755091 - L1MC5 LINE L1 -492 7469 7283 771 268 41 12 chr6 31524619 31524862 -157754692 - L1MC5 LINE L1 -734 7227 6978 394 291 81 18 chr6 31524908 31525131 -157754423 - L1 LINE L1 -1832 4314 4078 1708 154 35 18 chr6 31525228 31525513 -157754041 - AluJo SINE Alu -22 290 1 3852 74 37 22 chr6 31525783 31526321 -157753233 - LTR14 LTR ERVK 0 548 3 22 0 0 0 chr6 31526731 31526753 -157752801 + AT_rich Low_complexity Low_complexity 1 22 0 549 93 0 0 chr6 31526999 31527074 -157752480 - tRNA-Ala-GCG tRNA tRNA 0 75 1 256 250 9 52 chr6 31527931 31528047 -157751507 - L1MC4 LINE L1 -6 8036 7926 607 246 88 26 chr6 31528077 31528356 -157751198 - L1MC4 LINE L1 -98 7710 7471 2270 84 3 43 chr6 31528356 31528678 -157750876 - AluSg SINE Alu -1 309 1 607 246 88 26 chr6 31528678 31528710 -157750844 - L1MC4 LINE L1 -337 7471 7442 610 237 83 48 chr6 31578722 31578754 -157700800 + L1MC4 LINE L1 7522 7551 -491 2246 84 3 43 chr6 31578754 31579076 -157700478 + AluSg SINE Alu 1 309 -1 610 237 83 48 chr6 31579076 31579355 -157700199 + L1MC4 LINE L1 7551 7844 -198 271 250 9 52 chr6 31579385 31579501 -157700053 + L1MC4 LINE L1 7926 8036 -6 576 93 0 0 chr6 31580358 31580433 -157699121 + tRNA-Ala-GCG tRNA tRNA 1 75 0 22 0 0 0 chr6 31580679 31580701 -157698853 + AT_rich Low_complexity Low_complexity 1 22 0 4048 74 37 22 chr6 31581111 31581649 -157697905 + LTR14 LTR ERVK 3 548 0 1695 154 35 18 chr6 31581919 31582204 -157697350 + AluJo SINE Alu 1 290 -22 394 291 81 18 chr6 31582301 31582524 -157697030 + L1 LINE L1 4078 4314 -1832 771 268 41 12 chr6 31582570 31582813 -157696741 + L1MC5 LINE L1 6978 7227 -734 411 231 124 18 chr6 31582969 31583138 -157696416 + L1MC5 LINE L1 7283 7469 -492 1261 156 10 0 chr6 31583148 31583353 -157696201 + AluSq SINE Alu 3 209 -104 2316 85 14 3 chr6 31583442 31583736 -157695818 + AluSq SINE Alu 1 297 -16 186 43 0 0 chr6 31583747 31583770 -157695784 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 273 302 62 16 chr6 31584347 31584476 -157695078 + MER109 Unknown Unknown 469 603 -1829 * 11089 179 62 84 chr6 31584470 31585227 -157694327 + MER109 Unknown Unknown 1 773 -1659 2110 107 3 10 chr6 31585227 31585536 -157694018 - AluY SINE Alu 0 311 5 11089 179 62 84 chr6 31585536 31587156 -157692398 + MER109 Unknown Unknown 773 2427 -5 2352 97 3 3 chr6 31587156 31587465 -157692089 - AluSq SINE Alu -3 310 2 11089 179 62 84 chr6 31587465 31587659 -157691895 + MER109 Unknown Unknown 2427 2624 192 2281 119 0 0 chr6 31587659 31587961 -157691593 - AluSx SINE Alu -4 308 7 11089 179 62 84 chr6 31587961 31588536 -157691018 + MER109 Unknown Unknown 2624 1290 -1142 2080 102 46 0 chr6 31588536 31588820 -157690734 + AluSx SINE Alu 3 299 -13 11089 179 62 84 chr6 31588820 31589638 -157689916 + MER109 Unknown Unknown 1289 2123 -309 1037 129 48 47 chr6 31589771 31590100 -157689454 - LTR35 LTR ERV1 -228 390 1 245 29 0 29 chr6 31590185 31590220 -157689334 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1208 143 123 25 chr6 31590230 31590251 -157689303 - AluJb SINE Alu -44 268 250 1933 107 0 26 chr6 31590251 31590523 -157689031 - AluSx SINE Alu -47 265 1 201 74 0 0 chr6 31590523 31590550 -157689004 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1208 143 123 25 chr6 31590550 31590771 -157688783 - AluJb SINE Alu -61 251 1 5232 84 8 1 chr6 31591007 31591663 -157687891 - PABL_A LTR ERV1 0 660 1 1643 134 55 31 chr6 31591731 31592022 -157687532 + AluJo SINE Alu 7 304 -8 205 240 27 0 chr6 31592037 31592112 -157687442 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 245 307 93 0 chr6 31592131 31592206 -157687348 + MER21B LTR ERV1 26 107 -756 * 1185 201 55 4 chr6 31592203 31592471 -157687083 + MER21B LTR ERV1 19 324 -539 251 182 15 15 chr6 31592478 31592544 -157687010 + (TA)n Simple_repeat Simple_repeat 2 67 0 995 274 47 89 chr6 31592650 31592693 -157686861 - LTR16A LTR ERVL 0 450 407 1807 119 45 45 chr6 31592693 31593010 -157686544 - AluSx SINE Alu 0 318 2 995 274 47 89 chr6 31593010 31593225 -157686329 - LTR16A LTR ERVL -43 407 216 2145 90 36 0 chr6 31593225 31593502 -157686052 + AluSp SINE Alu 1 287 -26 995 274 47 89 chr6 31593502 31593710 -157685844 - LTR16A LTR ERVL -234 216 1 335 286 120 17 chr6 31593810 31593985 -157685569 + L1ME LINE L1 5298 5490 -680 1969 143 12 58 chr6 31593987 31594450 -157685104 + L1MA10 LINE L1 5169 5620 -548 * 45414 32 1 2 chr6 31594446 31600594 -157678960 + L1PA3 LINE L1 15 6152 -3 4264 129 28 43 chr6 31600595 31601338 -157678216 + L1MA10 LINE L1 5596 6327 -7 2154 130 0 0 chr6 31601352 31601652 -157677902 - AluSg SINE Alu -10 300 1 228 106 191 0 chr6 31601790 31601837 -157677717 - MLT2B1 LTR ERVL 0 515 460 243 192 17 50 chr6 31601837 31601957 -157677597 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 2136 198 58 22 chr6 31601968 31602413 -157677141 - MLT2B1 LTR ERVL -50 470 10 2444 69 0 7 chr6 31602512 31602817 -157676737 + AluY SINE Alu 1 303 -8 38 39 0 0 chr6 31602840 31602892 -157676662 + AT_rich Low_complexity Low_complexity 1 52 0 254 235 0 0 chr6 31602947 31602998 -157676556 + (ATG)n Simple_repeat Simple_repeat 2 52 0 2068 154 0 0 chr6 31603111 31603422 -157676132 + AluSx SINE Alu 1 311 -1 731 156 0 64 chr6 31603495 31603636 -157675918 + FLAM_A SINE Alu 1 132 -1 2717 108 17 6 chr6 31603718 31604078 -157675476 + THE1B LTR MaLR 1 364 0 2223 109 0 7 chr6 31604639 31604941 -157674613 + AluSx SINE Alu 1 300 -12 2128 100 0 4 chr6 31605078 31605393 -157674161 + AluSc SINE Alu 1 314 0 255 288 61 0 chr6 31605910 31605976 -157673578 - tRNA-Ala-GCG tRNA tRNA -3 72 3 495 155 0 0 chr6 31607284 31607355 -157672199 - tRNA-Ala-GCG tRNA tRNA -2 73 3 199 324 74 19 chr6 31607566 31607674 -157671880 + L2 LINE L2 3134 3247 -25 4999 139 27 13 chr6 31609315 31610143 -157669411 - L1MC1 LINE L1 -131 6482 5644 * 5985 157 43 54 chr6 31610140 31611361 -157668193 - L1MC1 LINE L1 -5216 1210 4 1661 189 20 0 chr6 31611434 31611736 -157667818 + AluSx SINE Alu 5 312 0 6930 142 119 86 chr6 31611867 31613510 -157666044 - pTR5 LTR ERV1 0 2438 742 2440 90 3 0 chr6 31613615 31613926 -157665628 + AluSx SINE Alu 1 312 0 1427 164 188 33 chr6 31614216 31614281 -157665273 - MSTA LTR MaLR -3 425 371 2494 46 0 7 chr6 31614281 31614584 -157664970 - AluY SINE Alu -7 304 4 1427 164 188 33 chr6 31614584 31614885 -157664669 - MSTA LTR MaLR -57 371 2 2338 95 0 3 chr6 31615508 31615813 -157663741 + AluSq SINE Alu 1 304 -9 1104 213 5 0 chr6 31615849 31616037 -157663517 - MER5A DNA MER1_type 0 189 1 659 28 0 0 chr6 31616648 31616720 -157662834 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 415 31 21 62 chr6 31616995 31617091 -157662463 + (TA)n Simple_repeat Simple_repeat 2 93 0 2401 49 39 0 chr6 31617091 31617377 -157662177 - AluY SINE Alu -14 297 1 3161 199 126 3 chr6 31617444 31618149 -157661405 + L1MC4 LINE L1 7090 7881 -161 2341 107 0 0 chr6 31618151 31618460 -157661094 - AluSg SINE Alu 0 310 2 195 100 0 0 chr6 31618488 31618518 -157661036 + (TG)n Simple_repeat Simple_repeat 2 31 0 190 140 20 20 chr6 31618545 31618595 -157660959 + (TA)n Simple_repeat Simple_repeat 2 51 0 203 125 25 0 chr6 31618677 31618717 -157660837 + (TA)n Simple_repeat Simple_repeat 1 41 0 27 49 0 0 chr6 31618781 31618822 -157660732 + AT_rich Low_complexity Low_complexity 1 41 0 181 372 21 11 chr6 31618849 31618943 -157660611 - MIR3 SINE MIR -99 109 15 21 0 0 0 chr6 31620799 31620820 -157658734 + AT_rich Low_complexity Low_complexity 1 21 0 275 237 169 34 chr6 31620872 31621049 -157658505 + MIR SINE MIR 49 249 -13 635 54 0 0 chr6 31621410 31621484 -157658070 - tRNA-Thr-ACT tRNA tRNA -3 74 1 228 354 0 0 chr6 31622903 31622985 -157656569 - L2 LINE L2 -11 3302 3221 2474 85 0 0 chr6 31623259 31623564 -157655990 + AluSx SINE Alu 1 305 -7 1090 134 32 0 chr6 31623566 31623723 -157655831 - THE1C LTR MaLR -213 162 1 2568 154 22 46 chr6 31624004 31624169 -157655385 + MLT1C LTR MaLR 19 186 -281 2285 78 3 10 chr6 31624169 31624462 -157655092 + AluSq SINE Alu 3 293 -20 2568 154 22 46 chr6 31624462 31624756 -157654798 + MLT1C LTR MaLR 186 467 0 7267 110 35 30 chr6 31626067 31626732 -157652822 + Tigger3b DNA MER2_type 1 661 -2367 2242 103 0 31 chr6 31626732 31627051 -157652503 - AluSx SINE Alu -3 309 1 7267 110 35 30 chr6 31627051 31627350 -157652204 + Tigger3b DNA MER2_type 661 962 -2066 1485 164 12 0 chr6 31627350 31627600 -157651954 - AluJb SINE Alu -59 253 1 7267 110 35 30 chr6 31627600 31627872 -157651682 + Tigger3b DNA MER2_type 962 1231 0 2421 64 10 0 chr6 31627891 31628186 -157651368 + AluY SINE Alu 1 298 -13 21 36 0 0 chr6 31629144 31629172 -157650382 + AT_rich Low_complexity Low_complexity 1 28 0 1739 92 0 0 chr6 31631057 31631284 -157648270 - AluSq SINE Alu -2 311 85 622 56 0 0 chr6 31631440 31631512 -157648042 - tRNA-Ala-GCG tRNA tRNA -3 72 1 22 35 0 0 chr6 31631572 31631601 -157647953 + AT_rich Low_complexity Low_complexity 1 29 0 482 161 117 0 chr6 31632595 31632697 -157646857 + MLT1A2 LTR MaLR 274 372 -2 688 249 76 10 chr6 31633080 31633277 -157646277 + L1MEc LINE L1 44 253 -6143 358 185 0 0 chr6 31633278 31633343 -157646211 + MLT2D LTR ERVL 1 65 -399 959 147 76 76 chr6 31633378 31633454 -157646100 + MLT2D LTR ERVL 53 128 -286 1741 147 47 0 chr6 31633454 31633733 -157645821 + AluSx SINE Alu 1 292 -20 959 147 76 76 chr6 31633733 31633867 -157645687 + MLT2D LTR ERVL 127 263 -151 529 270 0 45 chr6 31634766 31634988 -157644566 - MER20B DNA MER1_type -3 780 569 824 282 82 68 chr6 31635032 31635191 -157644363 - MER20B DNA MER1_type -222 561 406 1959 95 77 0 chr6 31635191 31635464 -157644090 - AluSg SINE Alu -15 295 2 824 282 82 68 chr6 31635464 31635567 -157643987 - MER20B DNA MER1_type -377 406 306 2342 76 0 13 chr6 31635567 31635868 -157643686 + AluSx SINE Alu 1 297 -15 824 282 82 68 chr6 31635868 31636115 -157643439 - MER20B DNA MER1_type -477 306 44 309 347 28 34 chr6 31636142 31636318 -157643236 + MLT1L LTR MaLR 156 330 -285 607 189 213 37 chr6 31636418 31636582 -157642972 - MER41D LTR ERV1 0 557 365 2303 108 3 0 chr6 31636595 31636901 -157642653 + AluSx SINE Alu 1 307 -5 454 286 112 6 chr6 31637248 31637409 -157642145 + MLT1L LTR MaLR 434 611 -4 27 29 0 0 chr6 31637440 31637474 -157642080 + AT_rich Low_complexity Low_complexity 1 34 0 1727 86 86 19 chr6 31637474 31637606 -157641948 - AluSx SINE Alu -26 286 164 2288 95 16 3 chr6 31637606 31637910 -157641644 - AluSq SINE Alu -5 308 1 1727 86 86 19 chr6 31637910 31638044 -157641510 - AluSx SINE Alu -148 164 2 386 279 54 54 chr6 31638051 31638198 -157641356 - L2 LINE L2 -605 2709 2563 * 482 242 32 8 chr6 31638167 31638291 -157641263 + L2 LINE L2 3184 3310 -3 1147 207 76 32 chr6 31638439 31638623 -157640931 + MER101B LTR ERV1 26 146 -328 1978 65 0 4 chr6 31638623 31638871 -157640683 + AluY SINE Alu 62 308 -3 1147 207 76 32 chr6 31638871 31639065 -157640489 + MER101B LTR ERV1 146 330 -144 485 273 13 33 chr6 31639126 31639276 -157640278 + L2 LINE L2 2292 2438 -876 2269 85 16 0 chr6 31639351 31639657 -157639897 - AluY SINE Alu 0 311 1 549 358 118 16 chr6 31639880 31640575 -157638979 - L2 LINE L2 -982 2332 1567 312 226 0 118 chr6 31640626 31640691 -157638863 + MER5A DNA MER1_type 12 62 -127 2200 123 3 0 chr6 31640691 31640999 -157638555 + AluSg SINE Alu 1 309 -1 312 226 0 118 chr6 31640999 31641035 -157638519 + MER5A DNA MER1_type 62 101 -88 220 315 145 21 chr6 31641119 31641354 -157638200 - L2 LINE L2 -1805 1509 1246 273 309 24 0 chr6 31641360 31641444 -157638110 + MIR3 SINE MIR 96 181 -27 2337 170 60 32 chr6 31642067 31642531 -157637023 + MLT1D LTR MaLR 1 477 -28 2192 113 3 3 chr6 31642684 31642995 -157636559 - AluSq SINE Alu -2 311 1 2554 72 3 0 chr6 31642995 31643301 -157636253 - AluSp SINE Alu -6 307 1 630 311 44 20 chr6 31643314 31643565 -157635989 - MIR SINE MIR -4 258 2 419 358 7 7 chr6 31643628 31643776 -157635778 - L2 LINE L2 -2489 825 678 2118 98 10 16 chr6 31643852 31644157 -157635397 - AluSp SINE Alu -10 303 1 869 181 0 0 chr6 31644226 31644353 -157635201 - FLAM_C SINE Alu -6 127 1 1742 171 26 19 chr6 31644362 31644672 -157634882 - AluJb SINE Alu 0 312 1 1969 113 27 14 chr6 31644704 31644996 -157634558 + AluSc SINE Alu 3 298 -11 721 128 0 10 chr6 31645754 31645856 -157633698 - AluSq SINE Alu -84 229 129 814 143 0 0 chr6 31646214 31646340 -157633214 - AluSg/x SINE Alu -44 266 141 683 0 0 0 chr6 31647039 31647111 -157632443 - tRNA-Ala-GCG tRNA tRNA -3 72 1 6497 144 19 29 chr6 31647968 31649203 -157630351 + L1MC1 LINE L1 5101 6321 -12 207 0 0 0 chr6 31649207 31649230 -157630324 + (A)n Simple_repeat Simple_repeat 1 23 0 2467 50 3 31 chr6 31649381 31649698 -157629856 + AluY SINE Alu 1 308 -3 1347 184 76 17 chr6 31649967 31650091 -157629463 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr6 31650091 31650142 -157629412 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 31650142 31650305 -157629249 + AluJb SINE Alu 116 305 -7 337 129 75 54 chr6 31650522 31650615 -157628939 - L1MC1 LINE L1 0 6333 6239 1189 217 53 38 chr6 31650622 31650963 -157628591 - L1M4 LINE L1 -2365 3781 3436 350 250 42 10 chr6 31651012 31651037 -157628517 - L1MC5 LINE L1 -53 7908 7885 2001 131 7 0 chr6 31651037 31651335 -157628219 + AluSx SINE Alu 1 300 -12 350 250 42 10 chr6 31651335 31651405 -157628149 - L1MC5 LINE L1 -76 7885 7810 262 111 0 0 chr6 31651504 31651540 -157628014 + MLT1F LTR MaLR 507 542 0 6086 120 32 57 chr6 31651781 31652858 -157626696 - L1MA3 LINE L1 0 6305 5255 21 36 0 0 chr6 31652999 31653027 -157626527 + AT_rich Low_complexity Low_complexity 1 28 0 255 228 51 0 chr6 31653156 31653235 -157626319 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1933 138 18 0 chr6 31654208 31654515 -157625039 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 31654859 31654881 -157624673 + AT_rich Low_complexity Low_complexity 1 22 0 3588 143 48 98 chr6 31655794 31656613 -157622941 + LTR5 LTR ERVK 190 967 -2 5126 119 17 4 chr6 31656615 31657362 -157622192 + HERVK LTR ERVK 1 757 -6486 37069 140 13 15 chr6 31657435 31660585 -157618969 + HERVK LTR ERVK 733 3887 -3530 5262 144 36 42 chr6 31660585 31661560 -157617994 + LTR5 LTR ERVK 1 969 0 37069 140 13 15 chr6 31661560 31665205 -157614349 + HERVK LTR ERVK 3887 7392 -25 5293 136 57 35 chr6 31665214 31666162 -157613392 + LTR5 LTR ERVK 1 969 0 554 81 0 0 chr6 31666162 31666236 -157613318 - AluJ/FLAM SINE Alu -237 75 2 465 149 0 14 chr6 31666413 31666487 -157613067 - tRNA-Lys-AAA tRNA tRNA -3 73 1 564 15 0 0 chr6 31668216 31668281 -157611273 + (CA)n Simple_repeat Simple_repeat 1 65 0 2566 59 0 3 chr6 31668644 31668951 -157610603 - AluY SINE Alu -5 306 1 529 125 0 0 chr6 31669115 31669187 -157610367 - tRNA-Ala-GCG tRNA tRNA -3 72 1 246 240 0 0 chr6 31670350 31670400 -157609154 - tRNA-Phe-TTC tRNA tRNA -26 50 1 2011 145 3 0 chr6 31671339 31671642 -157607912 + AluSx SINE Alu 1 304 -8 411 21 0 0 chr6 31672137 31672185 -157607369 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 2285 101 0 3 chr6 31672187 31672485 -157607069 + AluSg SINE Alu 2 298 -12 268 204 0 0 chr6 31672664 31672713 -157606841 + MER5B DNA MER1_type 127 175 -3 2204 108 3 0 chr6 31673202 31673499 -157606055 + AluSp SINE Alu 1 298 -15 2209 141 0 0 chr6 31674795 31675107 -157604447 - AluSx SINE Alu 0 312 1 1732 141 8 0 chr6 31675587 31675835 -157603719 - AluSx SINE Alu -23 289 40 411 149 0 0 chr6 31676178 31676252 -157603302 + (A)n Simple_repeat Simple_repeat 1 74 0 2654 129 41 10 chr6 31676310 31676728 -157602826 - MER65A LTR ERV1 0 445 15 217 246 15 15 chr6 31677272 31677337 -157602217 + CT-rich Low_complexity Low_complexity 2 66 0 222 179 0 0 chr6 31677358 31677414 -157602140 + T-rich Low_complexity Low_complexity 1 56 0 1977 189 68 16 chr6 31677679 31678118 -157601436 + MLT1C LTR MaLR 6 467 0 1619 266 67 32 chr6 31678169 31678703 -157600851 - ERVL LTR ERVL -364 5400 4848 241 286 76 25 chr6 31679043 31679162 -157600392 + L1ME LINE L1 785 909 -5621 2157 72 0 82 chr6 31679285 31679604 -157599950 - AluYa5 SINE Alu -18 293 1 960 242 117 41 chr6 31679628 31679902 -157599652 + L1ME LINE L1 999 1251 -5289 1452 184 19 42 chr6 31679902 31680212 -157599342 + AluJo SINE Alu 4 306 -6 960 242 117 41 chr6 31680212 31680589 -157598965 + L1ME LINE L1 1251 1714 -4826 890 145 8 0 chr6 31680608 31680739 -157598815 + AluJ SINE Alu 2 133 -169 533 28 0 28 chr6 31680742 31680814 -157598740 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 830 200 0 57 chr6 31680819 31680994 -157598560 + AluJ SINE Alu 134 298 -14 888 264 136 45 chr6 31680995 31681732 -157597822 + L1ME LINE L1 1732 2534 -4006 1048 123 62 47 chr6 31681736 31681947 -157597607 + L1MC/D LINE L1 5254 5467 -775 1969 90 3 61 chr6 31682150 31682461 -157597093 + AluSg SINE Alu 18 310 0 180 258 0 32 chr6 31682938 31683000 -157596554 - MER5A DNA MER1_type -26 163 104 515 125 0 0 chr6 31683772 31683844 -157595710 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 4470 155 50 11 chr6 31684038 31684825 -157594729 + Tigger7 DNA MER2_type 25 841 -1646 2028 123 17 7 chr6 31684944 31685244 -157594310 + AluSx SINE Alu 1 303 -9 811 237 0 0 chr6 31685767 31685919 -157593635 + AluSg/x SINE Alu 132 283 -27 343 168 35 0 chr6 31685919 31686062 -157593492 + (TA)n Simple_repeat Simple_repeat 1 148 0 1623 201 7 0 chr6 31686306 31686609 -157592945 - AluJo SINE Alu -7 305 1 3653 172 40 37 chr6 31686989 31687698 -157591856 + MER50 LTR ERV1 1 711 -23 1699 118 0 12 chr6 31687783 31688029 -157591525 + AluSg SINE Alu 60 302 -8 259 105 35 0 chr6 31688755 31688812 -157590742 + (TA)n Simple_repeat Simple_repeat 2 60 0 2392 92 3 0 chr6 31689108 31689412 -157590142 - AluSp SINE Alu -8 305 1 1910 121 35 0 chr6 31689418 31689700 -157589854 - AluSg SINE Alu -18 292 1 298 253 42 11 chr6 31689728 31689823 -157589731 - L1MD3 LINE L1 -8 7987 7890 1237 119 115 33 chr6 31690105 31690348 -157589206 - Tigger7 DNA MER2_type -1837 650 388 931 141 25 6 chr6 31690321 31690484 -157589070 - Tigger7 DNA MER2_type -1975 512 347 * 2686 42 0 0 chr6 31691576 31691886 -157587668 + AluY SINE Alu 2 311 0 1980 141 0 3 chr6 31691904 31692201 -157587353 + AluSx SINE Alu 5 300 -12 259 289 22 11 chr6 31692421 31692511 -157587043 + MIR SINE MIR 22 112 -150 2489 65 7 3 chr6 31693263 31693570 -157585984 - AluSp SINE Alu -5 308 1 2008 111 11 4 chr6 31694197 31694477 -157585077 + AluSx SINE Alu 14 295 -17 232 214 18 0 chr6 31694489 31694545 -157585009 + (TA)n Simple_repeat Simple_repeat 2 58 0 226 274 0 0 chr6 31694619 31694670 -157584884 + tRNA-Lys-AAA tRNA tRNA 20 70 -6 451 245 107 43 chr6 31694866 31695119 -157584435 - L1MC4a LINE L1 -1451 6357 6089 522 111 0 0 chr6 31695420 31695492 -157584062 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 29 0 0 0 chr6 31695644 31695673 -157583881 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr6 31695925 31695960 -157583594 + AT_rich Low_complexity Low_complexity 1 35 0 1104 131 113 5 chr6 31695963 31696185 -157583369 - L1MA8 LINE L1 -63 6228 5983 217 0 61 0 chr6 31696470 31696503 -157583051 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1861 112 11 0 chr6 31696503 31696779 -157582775 - AluSq SINE Alu -33 280 2 269 208 19 0 chr6 31696891 31696944 -157582610 - MER45 DNA AcHobo -899 54 1 439 163 75 0 chr6 31697591 31697671 -157581883 + LTR54 LTR ERV1 1 86 -424 236 235 0 0 chr6 31697809 31697860 -157581694 + MER57A LTR ERV1 301 351 -52 1467 114 5 0 chr6 31698114 31698307 -157581247 + AluSp SINE Alu 1 194 -119 277 205 66 16 chr6 31698485 31698607 -157580947 + AluSp SINE Alu 176 303 0 207 272 52 0 chr6 31699171 31699307 -157580247 + (TA)n Simple_repeat Simple_repeat 1 143 0 823 235 30 6 chr6 31699307 31699473 -157580081 - MLT1E LTR MaLR -421 172 3 832 136 30 77 chr6 31699525 31699694 -157579860 + MLT1A1 LTR MaLR 1 161 -204 5567 197 69 6 chr6 31699696 31700597 -157578957 - Cheshire DNA MER1_type -14 2406 1404 312 27 0 0 chr6 31700597 31700634 -157578920 + (CA)n Simple_repeat Simple_repeat 2 38 0 5567 197 69 6 chr6 31700634 31700981 -157578573 - Cheshire DNA MER1_type -1016 1404 1080 2330 107 0 3 chr6 31700990 31701299 -157578255 + AluSx SINE Alu 1 308 -4 661 40 0 0 chr6 31702097 31702171 -157577383 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 1123 185 30 17 chr6 31702716 31702948 -157576606 - MER45B DNA AcHobo -1 1039 805 441 287 67 18 chr6 31702963 31703127 -157576427 - MER45B DNA AcHobo -787 253 82 432 192 0 0 chr6 31703157 31703230 -157576324 - tRNA-Phe-TTC tRNA tRNA -3 73 1 31 0 0 0 chr6 31703515 31703546 -157576008 + AT_rich Low_complexity Low_complexity 1 31 0 423 0 0 0 chr6 31704636 31704683 -157574871 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 189 0 0 0 chr6 31704683 31704704 -157574850 + (TG)n Simple_repeat Simple_repeat 1 21 0 1070 40 0 0 chr6 31704704 31704830 -157574724 - AluY SINE Alu -29 282 157 524 83 0 0 chr6 31705394 31705466 -157574088 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 288 0 0 0 chr6 31705839 31705871 -157573683 + (A)n Simple_repeat Simple_repeat 1 32 0 2177 71 58 3 chr6 31706376 31706670 -157572884 + AluSx SINE Alu 1 310 -2 444 118 10 39 chr6 31709049 31709151 -157570403 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1960 104 39 0 chr6 31710193 31710473 -157569081 - AluSx SINE Alu -21 291 1 1786 60 0 38 chr6 31710977 31711212 -157568342 - AluY SINE Alu -6 305 80 517 151 0 0 chr6 31711507 31711580 -157567974 - tRNA-Ala-GCG tRNA tRNA -2 73 1 216 0 0 0 chr6 31711911 31711935 -157567619 + (CA)n Simple_repeat Simple_repeat 2 25 0 5720 170 13 31 chr6 31712028 31712350 -157567204 + L1MA10 LINE L1 4974 5300 -1034 243 0 0 0 chr6 31712350 31712377 -157567177 + (CA)n Simple_repeat Simple_repeat 1 27 0 5720 170 13 31 chr6 31712377 31713229 -157566325 + L1MA10 LINE L1 5300 6130 -204 2509 46 3 10 chr6 31713229 31713535 -157566019 + AluY SINE Alu 1 304 -7 5720 170 13 31 chr6 31713535 31713729 -157565825 + L1MA10 LINE L1 6130 6326 -8 663 146 0 146 chr6 31713890 31714054 -157565500 - FLAM_C SINE Alu -3 140 1 41 0 0 19 chr6 31715438 31715462 -157564092 + AT_rich Low_complexity Low_complexity 1 24 -27 2269 84 0 0 chr6 31715462 31715758 -157563796 - AluSx SINE Alu -16 296 1 41 0 0 19 chr6 31715758 31715785 -157563769 + AT_rich Low_complexity Low_complexity 24 51 0 1734 177 0 13 chr6 31715785 31716090 -157563464 + AluJo SINE Alu 1 301 -11 418 182 61 0 chr6 31716126 31716192 -157563362 + AluJ/FLAM SINE Alu 12 81 -231 2087 132 3 3 chr6 31716339 31716649 -157562905 - AluSx SINE Alu 0 312 3 2168 69 14 28 chr6 31716716 31717034 -157562520 + AluY SINE Alu 1 314 0 261 221 0 0 chr6 31717638 31717706 -157561848 + CT-rich Low_complexity Low_complexity 3 70 0 470 162 60 62 chr6 31717946 31718098 -157561456 - L1MC3 LINE L1 -1 7765 6193 2093 102 0 0 chr6 31718100 31718375 -157561179 + AluSx SINE Alu 2 276 -36 207 0 0 0 chr6 31718377 31718400 -157561154 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2585 58 0 6 chr6 31718402 31718715 -157560839 + AluSx SINE Alu 2 312 0 571 56 0 0 chr6 31719032 31719103 -157560451 - tRNA-Arg-CGA tRNA tRNA -5 71 1 1154 163 5 10 chr6 31719545 31719747 -157559807 + L1PA16 LINE L1 5966 6166 0 267 93 0 0 chr6 31720687 31720730 -157558824 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 301 200 0 0 chr6 31720731 31720781 -157558773 - MER66A LTR ERV1 -142 336 287 555 16 0 0 chr6 31721422 31721486 -157558068 + (TG)n Simple_repeat Simple_repeat 2 65 0 5504 124 52 19 chr6 31721584 31722071 -157557483 + L1MA3 LINE L1 5346 5816 -489 3730 65 135 68 chr6 31722071 31722643 -157556911 - LTR66 LTR ERVL 0 610 1 5504 124 52 19 chr6 31722643 31723085 -157556469 + L1MA3 LINE L1 5816 6305 0 607 82 0 0 chr6 31723830 31723903 -157555651 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2780 160 6 23 chr6 31723958 31724434 -157555120 + MER1A DNA MER1_type 62 529 0 3440 237 63 54 chr6 31724705 31725162 -157554392 + L1MDa LINE L1 1696 2147 -4393 2081 136 0 3 chr6 31725162 31725472 -157554082 + AluSg SINE Alu 1 309 -1 3440 237 63 54 chr6 31725472 31725706 -157553848 + L1MDa LINE L1 2147 2377 -4163 1501 84 21 0 chr6 31725706 31725897 -157553657 + AluSx SINE Alu 1 195 -117 3440 237 63 54 chr6 31725897 31726311 -157553243 + L1MDa LINE L1 2377 2786 -3754 2152 140 0 0 chr6 31726311 31726618 -157552936 - AluSq SINE Alu -6 307 1 3440 237 63 54 chr6 31726618 31727523 -157552031 + L1MDa LINE L1 2786 3733 -2807 1036 104 15 4 chr6 31727543 31727749 -157551805 + AluSq SINE Alu 2 284 -29 332 203 28 40 chr6 31728136 31728313 -157551241 + (TATAA)n Simple_repeat Simple_repeat 4 178 0 1507 253 47 44 chr6 31728349 31728381 -157551173 + L1MDa LINE L1 3722 3752 -2788 2877 83 193 43 chr6 31728381 31728488 -157551066 - LTR61 LTR ERV1 0 595 505 2232 106 10 0 chr6 31728488 31728791 -157550763 + AluSx SINE Alu 1 306 -6 2877 83 193 43 chr6 31728791 31729200 -157550354 - LTR61 LTR ERV1 -90 505 1 1507 253 47 44 chr6 31729200 31729369 -157550185 + L1MDa LINE L1 3752 3919 -2621 2324 99 0 0 chr6 31729369 31729663 -157549891 + AluSq SINE Alu 1 294 -19 1507 253 47 44 chr6 31729663 31729721 -157549833 + L1MDa LINE L1 3919 3975 -2565 2014 60 108 4 chr6 31729721 31729989 -157549565 + AluY SINE Alu 1 296 -15 1507 253 47 44 chr6 31729989 31730382 -157549172 + L1MDa LINE L1 3975 4379 -2161 1708 127 48 65 chr6 31730413 31730465 -157549089 - THE1C LTR MaLR 0 375 324 2155 113 0 0 chr6 31730465 31730758 -157548796 - AluSg SINE Alu -15 295 3 1708 127 48 65 chr6 31730758 31731059 -157548495 - THE1C LTR MaLR -51 324 19 559 237 290 15 chr6 31731125 31731387 -157548167 + L1M4 LINE L1 4751 5084 -1062 2033 117 29 0 chr6 31731589 31732033 -157547521 + AluSx SINE Alu 1 452 0 533 177 14 99 chr6 31732351 31732378 -157547176 - MER5A DNA MER1_type 0 189 161 2274 92 3 0 chr6 31732378 31732673 -157546881 + AluSg SINE Alu 1 296 -14 533 177 14 99 chr6 31732673 31732786 -157546768 - MER5A DNA MER1_type -28 161 61 2303 88 3 0 chr6 31733479 31733773 -157545781 - AluSp SINE Alu -16 297 3 21 0 0 0 chr6 31734104 31734125 -157545429 + GC_rich Low_complexity Low_complexity 1 21 0 561 69 0 0 chr6 31734459 31734531 -157545023 - tRNA-Ala-GCG tRNA tRNA -3 72 1 989 183 6 0 chr6 31735021 31735196 -157544358 + FRAM SINE Alu 1 173 -3 2207 101 3 14 chr6 31735626 31735944 -157543610 + AluSq SINE Alu 1 313 0 736 209 32 102 chr6 31736714 31736828 -157542726 + MER33 DNA MER1_type 1 111 -2474 2315 106 0 0 chr6 31736828 31737130 -157542424 + AluSg SINE Alu 1 302 -8 204 97 0 0 chr6 31737130 31737161 -157542393 + (TA)n Simple_repeat Simple_repeat 1 31 0 736 209 32 102 chr6 31737161 31737292 -157542262 + MER33 DNA MER1_type 110 208 -2377 1163 133 9 64 chr6 31737292 31737510 -157542044 + L1PA16 LINE L1 5952 6157 -9 736 209 32 102 chr6 31737510 31737615 -157541939 + MER33 DNA MER1_type 208 319 -5 1359 166 7 83 chr6 31738486 31738787 -157540767 + AluJb SINE Alu 1 278 -34 807 42 42 0 chr6 31738791 31738909 -157540645 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2096 108 3 3 chr6 31739203 31739490 -157540064 + AluSx SINE Alu 1 287 -25 548 82 0 14 chr6 31739688 31739761 -157539793 - tRNA-Phe-TTC tRNA tRNA -4 72 1 1267 93 11 11 chr6 31739861 31740043 -157539511 + AluSg/x SINE Alu 124 305 -7 669 138 0 204 chr6 31740151 31740376 -157539178 - AluSg/x SINE Alu -10 300 122 607 29 0 0 chr6 31740477 31740546 -157539008 + tRNA-Phe-TTC tRNA tRNA 1 69 -7 2302 106 0 0 chr6 31741212 31741524 -157538030 + AluSx SINE Alu 1 312 0 3660 126 30 4 chr6 31742269 31742811 -157536743 - LTR6A LTR ERV1 0 564 9 60739 135 10 10 chr6 31742821 31750040 -157529514 - HERVS71 LTR ERV1 -41 8937 1719 2467 58 10 0 chr6 31750040 31750332 -157529222 + AluY SINE Alu 1 295 -16 60739 135 10 10 chr6 31750332 31752048 -157527506 - HERVS71 LTR ERV1 -7259 1719 4 3671 122 28 4 chr6 31752050 31752593 -157526961 - LTR6A LTR ERV1 0 564 9 24 0 0 0 chr6 31753787 31753811 -157525743 + AT_rich Low_complexity Low_complexity 1 24 0 2394 106 0 0 chr6 31753838 31754198 -157525356 + AluY SINE Alu 1 360 0 326 288 0 0 chr6 31754862 31754935 -157524619 - tRNA-Ala-GCG tRNA tRNA -2 73 1 531 0 0 0 chr6 31755062 31755121 -157524433 + (TC)n Simple_repeat Simple_repeat 1 59 0 3233 238 101 40 chr6 31755310 31756177 -157523377 + L1MC4 LINE L1 6098 7031 -777 2479 66 0 0 chr6 31756177 31756480 -157523074 + AluY SINE Alu 2 304 -7 3233 238 101 40 chr6 31756480 31757196 -157522358 + L1MC4 LINE L1 7031 7702 -106 253 291 12 12 chr6 31757548 31757634 -157521920 + GA-rich Low_complexity Low_complexity 4 89 0 2505 55 3 3 chr6 31757772 31758081 -157521473 + AluY SINE Alu 1 309 -2 754 219 0 64 chr6 31758352 31758629 -157520925 + FAM SINE Alu 1 129 0 502 259 199 19 chr6 31758640 31758908 -157520646 + L1M4 LINE L1 2183 2401 -3745 1984 97 3 45 chr6 31758908 31759220 -157520334 + AluSc SINE Alu 1 300 0 2108 91 3 47 chr6 31759228 31759513 -157520041 + AluSx SINE Alu 5 276 -36 257 50 0 25 chr6 31759513 31759553 -157520001 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2108 91 3 47 chr6 31759553 31759586 -157519968 + AluSx SINE Alu 276 309 -3 502 259 199 19 chr6 31759586 31759628 -157519926 + L1M4 LINE L1 2406 2561 -3585 2154 64 4 0 chr6 31760103 31760368 -157519186 - AluY SINE Alu -42 269 4 1047 245 62 28 chr6 31760376 31760845 -157518709 + L1M4 LINE L1 2557 3041 -3105 675 84 11 0 chr6 31760848 31760943 -157518611 + AluSg1 SINE Alu 2 97 -212 315 0 0 0 chr6 31760943 31760978 -157518576 + (A)n Simple_repeat Simple_repeat 1 35 0 1000 264 68 32 chr6 31760979 31761475 -157518079 + L1M4 LINE L1 3028 3541 -2605 2160 99 0 0 chr6 31761511 31761784 -157517770 - AluSx SINE Alu -31 281 9 1529 105 37 131 chr6 31763200 31763551 -157516003 - AluYb8 SINE Alu 0 318 1 534 180 57 8 chr6 31764032 31764154 -157515400 - MER5A DNA MER1_type 0 189 62 211 216 0 0 chr6 31765146 31765197 -157514357 + A-rich Low_complexity Low_complexity 1 51 0 2175 106 30 0 chr6 31765201 31765502 -157514052 + AluSx SINE Alu 2 311 -1 582 56 0 0 chr6 31765867 31765939 -157513615 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1084 74 14 0 chr6 31766087 31766235 -157513319 + AluSq SINE Alu 148 297 -16 276 30 0 0 chr6 31766343 31766376 -157513178 + (TG)n Simple_repeat Simple_repeat 2 34 0 2440 60 13 0 chr6 31766466 31766768 -157512786 + AluSp SINE Alu 1 306 -7 679 0 0 0 chr6 31766819 31766892 -157512662 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1377 268 99 41 chr6 31767946 31768180 -157511374 + L1ME3 LINE L1 5186 5405 -757 1740 158 24 3 chr6 31768180 31768471 -157511083 + AluSx SINE Alu 2 298 -14 1377 268 99 41 chr6 31768471 31768623 -157510931 + L1ME3 LINE L1 5405 5547 -615 396 0 0 0 chr6 31768623 31768667 -157510887 + (TA)n Simple_repeat Simple_repeat 2 45 0 1377 268 99 41 chr6 31768667 31768914 -157510640 + L1ME3 LINE L1 5547 5778 -384 2431 93 0 0 chr6 31768914 31769224 -157510330 + AluY SINE Alu 1 310 -1 1377 268 99 41 chr6 31769224 31769290 -157510264 + L1ME3 LINE L1 5778 5839 -323 817 179 153 85 chr6 31769290 31769566 -157509988 + MLT1A1 LTR MaLR 1 257 -108 2058 120 0 7 chr6 31769566 31769849 -157509705 + AluSq SINE Alu 1 281 -32 300 27 0 0 chr6 31769850 31769887 -157509667 + (GGGAA)n Simple_repeat Simple_repeat 2 38 0 817 179 153 85 chr6 31769887 31769948 -157509606 + MLT1A1 LTR MaLR 256 363 -2 1377 268 99 41 chr6 31769948 31770099 -157509455 + L1ME3 LINE L1 5839 6075 -87 180 0 0 0 chr6 31770233 31770253 -157509301 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 471 153 0 0 chr6 31772057 31772129 -157507425 - tRNA-Ala-GCG tRNA tRNA -3 72 1 2287 88 24 0 chr6 31772288 31772665 -157506889 + AluSg1 SINE Alu 1 384 0 823 237 122 101 chr6 31772823 31772967 -157506587 + L1MC4a LINE L1 6098 6238 -1570 326 0 0 0 chr6 31772967 31773002 -157506552 + U2 snRNA snRNA 1 35 -153 823 237 122 101 chr6 31773002 31773331 -157506223 + L1MC4a LINE L1 6238 6623 -1185 2114 127 13 3 chr6 31773331 31773630 -157505924 + AluSx SINE Alu 1 302 -10 823 237 122 101 chr6 31773630 31773763 -157505791 + L1MC4a LINE L1 6623 6752 -1056 406 129 0 0 chr6 31773792 31773854 -157505700 + Alu SINE Alu 236 297 -15 2302 232 66 34 chr6 31773854 31774642 -157504912 + L1MC4 LINE L1 7089 7901 -141 281 67 0 22 chr6 31774672 31774717 -157504837 + (TA)n Simple_repeat Simple_repeat 2 45 0 305 228 11 33 chr6 31774724 31774816 -157504738 + L1MC4 LINE L1 6614 6703 -1339 307 215 21 43 chr6 31774818 31774911 -157504643 + L1MC4 LINE L1 6613 6703 -1339 440 93 0 41 chr6 31774917 31775014 -157504540 + (TA)n Simple_repeat Simple_repeat 2 94 0 2151 244 51 32 chr6 31775372 31775555 -157503999 + L1M4 LINE L1 2429 2607 -3539 2501 51 0 7 chr6 31775555 31775850 -157503704 + AluY SINE Alu 1 293 -18 2151 244 51 32 chr6 31775850 31776402 -157503152 + L1M4 LINE L1 2607 3186 -2960 186 43 0 0 chr6 31776402 31776425 -157503129 + (CA)n Simple_repeat Simple_repeat 2 24 0 2151 244 51 32 chr6 31776425 31776583 -157502971 + L1M4 LINE L1 3186 3340 -2806 2136 117 3 0 chr6 31776587 31776905 -157502649 + AluSx SINE Alu 1 319 0 546 198 50 8 chr6 31777072 31777193 -157502361 - MER5A DNA MER1_type 0 189 64 2270 67 7 7 chr6 31778281 31778609 -157500945 + AluSq SINE Alu 1 328 0 539 70 14 0 chr6 31778887 31778958 -157500596 - tRNA-Ala-GCG tRNA tRNA -3 72 1 591 235 29 0 chr6 31779439 31779575 -157499979 + FRAM SINE Alu 1 137 -39 207 0 0 0 chr6 31779576 31779599 -157499955 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 458 174 20 0 chr6 31779612 31779710 -157499844 + GA-rich Low_complexity Low_complexity 2 101 0 225 254 0 0 chr6 31780492 31780547 -157499007 + (TG)n Simple_repeat Simple_repeat 2 56 0 847 167 72 85 chr6 31780931 31781153 -157498401 + MER33 DNA MER1_type 1 214 -2371 1160 144 25 5 chr6 31781153 31781355 -157498199 + L1PA16 LINE L1 5952 6157 -9 847 167 72 85 chr6 31781355 31781376 -157498178 + MER33 DNA MER1_type 214 234 -2351 2502 53 3 25 chr6 31781376 31781512 -157498042 + AluSp SINE Alu 1 138 -175 2274 55 31 3 chr6 31781512 31781801 -157497753 + AluY SINE Alu 1 297 -14 2502 53 3 25 chr6 31781801 31781982 -157497572 + AluSp SINE Alu 138 311 -2 847 167 72 85 chr6 31781982 31782057 -157497497 + MER33 DNA MER1_type 234 302 -22 1312 151 43 108 chr6 31783000 31783325 -157496229 + AluJb SINE Alu 1 304 -8 216 163 0 0 chr6 31783678 31783721 -157495833 + (TA)n Simple_repeat Simple_repeat 1 43 0 315 0 0 0 chr6 31783723 31783758 -157495796 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 118 0 0 chr6 31783793 31783827 -157495727 + (A)n Simple_repeat Simple_repeat 1 34 0 647 27 0 0 chr6 31783920 31783993 -157495561 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1679 112 97 12 chr6 31784535 31784827 -157494727 - AluSg SINE Alu 0 314 1 1986 94 63 18 chr6 31784892 31785178 -157494376 + AluSx SINE Alu 1 299 -13 468 195 71 0 chr6 31785216 31785329 -157494225 - AluSc SINE Alu -12 297 177 2310 81 0 0 chr6 31785599 31785882 -157493672 + AluSq SINE Alu 1 283 -30 33 0 0 0 chr6 31785921 31785954 -157493600 + AT_rich Low_complexity Low_complexity 1 33 0 432 194 0 0 chr6 31788159 31788231 -157491323 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1278 244 144 59 chr6 31788539 31788994 -157490560 + L1MC4a LINE L1 6098 6636 -1172 1950 128 21 0 chr6 31788994 31789282 -157490272 + AluSx SINE Alu 1 294 -18 1278 244 144 59 chr6 31789282 31789534 -157490020 + L1MC4a LINE L1 6636 6865 -943 2087 112 3 0 chr6 31789536 31789831 -157489723 + AluSx SINE Alu 8 303 -9 454 231 0 8 chr6 31789891 31790010 -157489544 + L1MC4 LINE L1 7915 8042 0 468 216 43 35 chr6 31791805 31791921 -157487633 - MER5A DNA MER1_type 0 189 73 575 69 0 0 chr6 31793322 31793394 -157486160 - tRNA-Ala-GCG tRNA tRNA -3 72 1 781 173 7 0 chr6 31793875 31794014 -157485540 + FRAM SINE Alu 1 137 -39 383 123 0 27 chr6 31794014 31794087 -157485467 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 778 178 35 96 chr6 31795238 31795365 -157484189 + MER33 DNA MER1_type 1 123 -2501 1827 127 13 47 chr6 31795365 31795665 -157483889 - AluSg SINE Alu -20 290 1 778 178 35 96 chr6 31795665 31795777 -157483777 + MER33 DNA MER1_type 123 240 -2384 1314 109 20 5 chr6 31795777 31795979 -157483575 + L1PA16 LINE L1 5952 6156 -10 1939 143 0 0 chr6 31795979 31796282 -157483272 - AluSx SINE Alu 0 308 6 778 178 35 96 chr6 31796282 31796401 -157483153 + MER33 DNA MER1_type 238 352 -11 2252 118 3 0 chr6 31796790 31796964 -157482590 - AluSq SINE Alu -7 306 129 321 26 0 0 chr6 31796964 31797002 -157482552 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2252 118 3 0 chr6 31797002 31797132 -157482422 - AluSq SINE Alu -184 129 1 195 114 0 0 chr6 31797413 31797448 -157482106 + (A)n Simple_repeat Simple_repeat 1 35 0 2214 133 0 0 chr6 31797573 31797881 -157481673 + AluSg SINE Alu 1 308 -2 1569 161 7 56 chr6 31798015 31798319 -157481235 + AluJb SINE Alu 6 294 -18 2460 58 3 0 chr6 31798322 31798614 -157480940 + AluY SINE Alu 1 293 -18 2280 58 41 7 chr6 31798676 31798968 -157480586 - AluY SINE Alu -9 302 1 203 133 0 0 chr6 31799260 31799290 -157480264 + (CATA)n Simple_repeat Simple_repeat 2 31 0 619 27 0 14 chr6 31799403 31799477 -157480077 - tRNA-Phe-TTC tRNA tRNA -3 73 1 2259 105 7 0 chr6 31799691 31799995 -157479559 + AluSx SINE Alu 1 306 -6 561 145 30 6 chr6 31800372 31800538 -157479016 + (TA)n Simple_repeat Simple_repeat 1 170 0 205 61 20 61 chr6 31800537 31800586 -157478968 + (GA)n Simple_repeat Simple_repeat 2 48 0 * 433 186 62 0 chr6 31800586 31800683 -157478871 - AluSc SINE Alu -30 279 177 2109 117 3 3 chr6 31802870 31803182 -157476372 + AluSp SINE Alu 1 312 0 308 278 0 0 chr6 31803506 31803578 -157475976 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1506 258 154 40 chr6 31803801 31804575 -157474979 + L1MC4a LINE L1 6234 7095 -713 532 72 0 4 chr6 31804575 31804797 -157474757 + AluSp SINE Alu 1 309 0 1526 221 110 27 chr6 31804798 31805287 -157474267 + L1MC4 LINE L1 7389 7918 -124 204 40 0 0 chr6 31805292 31805317 -157474237 + (CA)n Simple_repeat Simple_repeat 2 26 0 2098 123 3 3 chr6 31805496 31805797 -157473757 - AluSp SINE Alu -12 301 1 416 235 0 0 chr6 31805797 31805878 -157473676 - Tigger3(Golem) DNA MER2_type -2948 81 1 599 143 9 9 chr6 31805879 31805984 -157473570 + MLT1D LTR MaLR 398 502 -3 11850 51 0 38 chr6 31806072 31808337 -157471217 + L1PA6 LINE L1 3923 6154 0 2456 66 0 35 chr6 31808353 31808671 -157470883 + AluY SINE Alu 1 307 -4 21 36 0 0 chr6 31808927 31808955 -157470599 + AT_rich Low_complexity Low_complexity 1 28 0 2057 133 3 0 chr6 31808958 31809259 -157470295 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr6 31809299 31809327 -157470227 + AT_rich Low_complexity Low_complexity 1 28 0 2520 53 0 37 chr6 31810577 31810900 -157468654 + AluY SINE Alu 1 311 0 1281 116 0 0 chr6 31811715 31811888 -157467666 - AluSg/x SINE Alu -12 300 128 2349 76 20 3 chr6 31812933 31813234 -157466320 + AluSg SINE Alu 1 306 -4 301 234 224 0 chr6 31813469 31813576 -157465978 - MER5A DNA MER1_type -14 175 45 2168 66 40 23 chr6 31813914 31814215 -157465339 + AluY SINE Alu 1 306 -5 508 97 0 0 chr6 31814538 31814610 -157464944 - tRNA-Ala-GCG tRNA tRNA -3 72 1 515 293 137 35 chr6 31815614 31816658 -157462896 + L1MB2 LINE L1 2683 3832 -2314 1254 151 0 5 chr6 31816693 31816911 -157462643 + L1MA4A LINE L1 5852 6068 -235 1149 136 0 0 chr6 31816911 31817080 -157462474 - AluSg/x SINE Alu -7 305 137 1035 74 40 7 chr6 31817081 31817230 -157462324 + L1MA4A LINE L1 6070 6223 -80 841 278 64 40 chr6 31817249 31817452 -157462102 + L1MC/D LINE L1 5468 5665 -2143 1856 165 0 23 chr6 31817452 31817780 -157461774 + AluSx SINE Alu 1 312 0 841 278 64 40 chr6 31817780 31817838 -157461716 + L1MC/D LINE L1 5665 5720 -2088 1625 101 167 8 chr6 31817838 31818096 -157461458 + AluSc SINE Alu 1 299 0 841 278 64 40 chr6 31818096 31818179 -157461375 + L1MC/D LINE L1 5720 5821 -1987 1185 164 15 5 chr6 31818197 31818398 -157461156 + LTR48B LTR ERV1 442 644 0 1907 318 59 34 chr6 31818407 31818645 -157460909 + L1M4b LINE L1 469 700 -6159 2374 102 0 6 chr6 31818645 31818958 -157460596 + AluSx SINE Alu 1 311 -1 1907 318 59 34 chr6 31818958 31819478 -157460076 + L1M4b LINE L1 700 1246 -5613 6357 184 23 40 chr6 31819487 31819599 -157459955 + L1MB2 LINE L1 3851 3963 -2220 2341 86 0 10 chr6 31819599 31819913 -157459641 + AluY SINE Alu 1 311 0 6357 184 23 40 chr6 31819913 31820117 -157459437 + L1MB2 LINE L1 3963 4169 -2014 1662 164 17 7 chr6 31820117 31820416 -157459138 + AluJb SINE Alu 7 308 -4 6357 184 23 40 chr6 31820416 31821058 -157458496 + L1MB2 LINE L1 4169 4820 -1363 2149 107 0 27 chr6 31821058 31821356 -157458198 + AluSg SINE Alu 1 290 -20 6357 184 23 40 chr6 31821356 31822165 -157457389 + L1MB2 LINE L1 4820 5589 -594 225 94 0 0 chr6 31822171 31822203 -157457351 + (TA)n Simple_repeat Simple_repeat 1 32 0 3134 143 54 17 chr6 31822206 31822966 -157456588 + MER21A LTR ERV1 20 931 0 2819 168 40 18 chr6 31822970 31823525 -157456029 + L1MB2 LINE L1 5587 6153 -18 1879 137 20 7 chr6 31823575 31823867 -157455687 + AluSx SINE Alu 1 296 -16 878 263 57 9 chr6 31823871 31824221 -157455333 + L1 LINE L1 2945 3311 -2835 1873 142 59 0 chr6 31824225 31824513 -157455041 + AluSg SINE Alu 5 309 -1 40294 76 5 9 chr6 31824547 31826002 -157453552 + L1PA5 LINE L1 12 1470 -4684 2538 68 0 0 chr6 31826002 31826312 -157453242 + AluY SINE Alu 1 310 -1 40294 76 5 9 chr6 31826312 31831018 -157448536 + L1PA5 LINE L1 1470 6152 -2 2128 128 0 3 chr6 31831109 31831405 -157448149 - AluSx SINE Alu -17 295 1 381 271 53 79 chr6 31831760 31831907 -157447647 - L1MEd LINE L1 -4929 1190 1041 2213 112 3 0 chr6 31831907 31832201 -157447353 - AluY SINE Alu -15 296 2 381 271 53 79 chr6 31832201 31832507 -157447047 - L1MEd LINE L1 -5078 1041 749 403 71 24 36 chr6 31832508 31832592 -157446962 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 323 322 86 39 chr6 31832595 31832828 -157446726 - L1MEd LINE L1 -5359 760 517 2734 125 7 40 chr6 31833325 31833604 -157445950 + MER57B LTR ERV1 1 261 -173 2200 95 0 33 chr6 31833604 31833910 -157445644 - AluSg SINE Alu -14 296 1 2734 125 7 40 chr6 31833910 31834079 -157445475 + MER57B LTR ERV1 261 434 0 2419 70 7 0 chr6 31834238 31834536 -157445018 + AluSp SINE Alu 1 300 -13 24 0 0 0 chr6 31835094 31835118 -157444436 + AT_rich Low_complexity Low_complexity 1 24 0 1755 186 32 6 chr6 31835216 31835555 -157443999 - MER7A DNA MER2_type 0 346 1 566 197 17 26 chr6 31836335 31836452 -157443102 + MER3 DNA MER1_type 2 117 -92 3823 132 60 50 chr6 31836669 31837353 -157442201 + LTR8 LTR ERV1 1 691 0 535 153 0 0 chr6 31838214 31838299 -157441255 + MER50 LTR ERV1 145 229 -505 * 1438 162 18 42 chr6 31838293 31838577 -157440977 + MER50 LTR ERV1 433 709 -25 1981 102 0 62 chr6 31838864 31839186 -157440368 + AluSx SINE Alu 1 302 -10 508 97 0 0 chr6 31839779 31839851 -157439703 - tRNA-Ala-GCG tRNA tRNA -3 72 1 858 221 75 29 chr6 31840992 31841230 -157438324 + MER39 LTR ERV1 288 536 -171 1398 177 108 23 chr6 31841230 31841581 -157437973 - MER6 DNA MER2_type -1 864 484 7320 151 150 30 chr6 31841585 31843098 -157436456 - pTR5 LTR ERV1 0 2438 744 1299 213 28 32 chr6 31843098 31843326 -157436228 - MER6 DNA MER2_type -392 473 246 180 77 0 0 chr6 31843326 31843352 -157436202 + (CA)n Simple_repeat Simple_repeat 1 26 0 1299 213 28 32 chr6 31843352 31843544 -157436010 - MER6 DNA MER2_type -619 246 1 533 239 43 25 chr6 31843549 31843627 -157435927 + MER39 LTR ERV1 537 612 -95 2362 103 3 3 chr6 31843627 31843937 -157435617 - AluSp SINE Alu -3 310 1 533 239 43 25 chr6 31843937 31844021 -157435533 + MER39 LTR ERV1 612 702 -5 247 143 0 0 chr6 31844185 31844220 -157435334 - 7SK RNA RNA -158 35 1 205 281 0 0 chr6 31844231 31844288 -157435266 + MER5B DNA MER1_type 122 178 0 2496 126 62 3 chr6 31844367 31844755 -157434799 - LTR57 LTR ERVL 0 411 1 9017 135 20 20 chr6 31844755 31845416 -157434138 - LTR57-int LTR ERVL 0 5343 4683 2482 70 0 7 chr6 31845416 31845717 -157433837 - AluY SINE Alu -12 299 1 9017 135 20 20 chr6 31845717 31846389 -157433165 - LTR57-int LTR ERVL -660 4683 4007 2317 113 0 0 chr6 31846389 31846690 -157432864 - AluSx SINE Alu -11 301 1 9017 135 20 20 chr6 31846690 31846728 -157432826 - LTR57-int LTR ERVL -1335 4008 3971 788 153 0 0 chr6 31846716 31846834 -157432720 - LTR57-int LTR ERVL -2176 3167 3050 * 7614 128 36 11 chr6 31846825 31847962 -157431592 - LTR57-int LTR ERVL -2573 2770 1605 4064 175 31 68 chr6 31847972 31849248 -157430306 - pTR5 LTR ERV1 -143 2295 746 10238 109 28 35 chr6 31849248 31850043 -157429511 - LTR57-int LTR ERVL -3734 1609 810 2241 115 0 3 chr6 31850043 31850355 -157429199 + AluSq SINE Alu 1 311 -2 10238 109 28 35 chr6 31850355 31850661 -157428893 - LTR57-int LTR ERVL -4533 810 503 2622 60 33 0 chr6 31850661 31850994 -157428560 - LTR14A LTR ERVK 0 344 1 1934 97 86 0 chr6 31851002 31851271 -157428283 + AluSg SINE Alu 1 292 -18 10238 109 28 35 chr6 31851271 31851779 -157427775 - LTR57-int LTR ERVL -4847 496 1 2517 134 32 29 chr6 31851779 31851964 -157427590 - LTR57 LTR ERVL 0 411 228 2038 121 13 0 chr6 31851964 31852262 -157427292 - AluSx SINE Alu -10 302 1 2517 134 32 29 chr6 31852262 31852485 -157427069 - LTR57 LTR ERVL -183 228 2 675 225 67 11 chr6 31852682 31852860 -157426694 - MER5A DNA MER1_type 0 189 2 2255 95 0 52 chr6 31853454 31853780 -157425774 + AluSq SINE Alu 1 309 -4 189 0 0 0 chr6 31854071 31854092 -157425462 + (CA)n Simple_repeat Simple_repeat 2 22 0 470 105 13 13 chr6 31854281 31854357 -157425197 + AluJ/FRAM SINE Alu 226 301 -11 312 260 42 0 chr6 31855505 31855601 -157423953 - L1ME4a LINE L1 -199 5922 5823 1861 115 25 7 chr6 31855686 31855964 -157423590 + AluJb SINE Alu 5 287 -25 2033 117 16 13 chr6 31855972 31856280 -157423274 + AluSx SINE Alu 1 309 -3 578 56 0 0 chr6 31857482 31857553 -157422001 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 229 294 56 24 chr6 31857657 31857783 -157421771 - L2 LINE L2 -18 3295 3166 272 252 107 29 chr6 31858615 31858718 -157420836 - MIR SINE MIR -93 169 59 2320 72 0 33 chr6 31858839 31859143 -157420411 - AluSc SINE Alu -15 294 1 1257 159 4 53 chr6 31859178 31859405 -157420149 - AluJo SINE Alu -83 229 14 2539 202 46 70 chr6 31859415 31860272 -157419282 - L1MB4 LINE L1 -216 5964 5133 584 185 74 0 chr6 31860276 31860384 -157419170 - AluSg/x SINE Alu -18 294 179 3726 193 68 19 chr6 31860385 31861500 -157418054 - pTR5 LTR ERV1 -1 2605 1524 5314 139 48 53 chr6 31861505 31862525 -157417029 + pTR5 LTR ERV1 1419 2433 -5 1887 112 73 21 chr6 31862837 31863124 -157416430 + AluY SINE Alu 1 302 -9 2173 87 30 7 chr6 31863226 31863525 -157416029 + AluSg SINE Alu 1 306 -4 1915 139 13 28 chr6 31864204 31864521 -157415033 - AluJb SINE Alu 0 312 1 1649 172 27 30 chr6 31866054 31866351 -157413203 + AluJb SINE Alu 3 298 -14 355 289 191 3 chr6 31866495 31866678 -157412876 + MIR SINE MIR 49 262 0 2471 61 3 0 chr6 31867287 31867582 -157411972 + AluY SINE Alu 1 296 -15 1753 106 24 0 chr6 31867670 31867916 -157411638 + AluSx SINE Alu 1 252 -60 288 0 0 0 chr6 31867919 31867951 -157411603 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1665 126 0 8 chr6 31867963 31868202 -157411352 - AluSx SINE Alu -44 268 32 639 143 0 19 chr6 31868303 31868396 -157411158 + FRAM SINE Alu 57 149 -163 270 0 0 0 chr6 31868396 31868426 -157411128 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 639 143 0 19 chr6 31868426 31868437 -157411117 + FRAM SINE Alu 149 159 -17 820 166 112 34 chr6 31868439 31868644 -157410910 + L1MB8 LINE L1 5957 6177 -1 1791 145 0 4 chr6 31869197 31869459 -157410095 + AluSx SINE Alu 32 292 -20 238 36 0 0 chr6 31869459 31869487 -157410067 + (GA)n Simple_repeat Simple_repeat 1 28 0 470 148 0 11 chr6 31869489 31869577 -157409977 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 572 137 0 11 chr6 31869655 31869750 -157409804 - AluJ/FLAM SINE Alu -217 95 2 532 194 46 51 chr6 31870337 31870479 -157409075 - MER87 LTR ERV1 -1 555 396 2432 99 0 0 chr6 31870507 31870819 -157408735 - AluSx SINE Alu 0 312 1 2281 70 3 34 chr6 31870830 31871171 -157408383 - AluY SINE Alu 0 332 1 2544 40 10 3 chr6 31871911 31872212 -157407342 - AluY SINE Alu -6 305 3 533 9 9 224 chr6 31872312 31872419 -157407135 - tRNA-Leu-TTG tRNA tRNA -2 84 1 180 0 0 0 chr6 31872662 31872682 -157406872 + (T)n Simple_repeat Simple_repeat 1 20 0 184 170 0 85 chr6 31873353 31873400 -157406154 + L2 LINE L2 3253 3295 -18 277 275 233 13 chr6 31873825 31874199 -157405355 - L1ME4a LINE L1 -49 6072 5617 2482 69 3 0 chr6 31874199 31874502 -157405052 - AluSg SINE Alu -6 304 1 1996 125 20 14 chr6 31874521 31874818 -157404736 - AluSx SINE Alu -12 300 2 2131 105 0 14 chr6 31875241 31875535 -157404019 - AluSg SINE Alu -20 290 1 2121 101 42 0 chr6 31875598 31875884 -157403670 - AluSx SINE Alu -12 300 3 25 75 0 0 chr6 31875931 31875984 -157403570 + AT_rich Low_complexity Low_complexity 1 53 0 268 262 62 41 chr6 31876223 31876368 -157403186 + L1MC5 LINE L1 7754 7901 -60 847 201 0 0 chr6 31876784 31876933 -157402621 + FRAM SINE Alu 1 146 -30 545 273 71 0 chr6 31878114 31878268 -157401286 + MIR SINE MIR 48 212 -50 2283 85 3 3 chr6 31878580 31878873 -157400681 + AluSg SINE Alu 1 293 -17 1623 191 18 7 chr6 31881021 31881299 -157398255 - AluJo SINE Alu -30 282 2 554 288 42 12 chr6 31881325 31881602 -157397952 - MER46C DNA MER2_type 0 338 1 648 201 167 14 chr6 31881643 31881787 -157397767 - FRAM SINE Alu 0 166 1 1475 151 97 32 chr6 31882039 31882317 -157397237 + AluJo SINE Alu 12 307 -5 29 0 0 0 chr6 31882317 31882346 -157397208 + AT_rich Low_complexity Low_complexity 1 29 0 191 227 61 83 chr6 31882554 31882686 -157396868 + L2 LINE L2 3185 3313 0 471 282 168 5 chr6 31884255 31884464 -157395090 - MIR SINE MIR -5 257 15 2440 65 10 0 chr6 31885203 31885497 -157394057 - AluSp SINE Alu -16 297 1 361 204 70 34 chr6 31885905 31886035 -157393519 + MLT1J LTR MaLR 1 173 -315 803 153 0 22 chr6 31886089 31886226 -157393328 + FLAM_C SINE Alu 10 143 0 455 294 101 55 chr6 31886278 31886415 -157393139 + MLT1J LTR MaLR 274 426 -85 2280 121 0 0 chr6 31886415 31886720 -157392834 - AluSx SINE Alu -7 305 1 455 294 101 55 chr6 31886720 31886800 -157392754 + MLT1J LTR MaLR 426 501 -10 316 159 79 0 chr6 31888134 31888197 -157391357 - L1MC4 LINE L1 0 8042 7975 2198 109 0 3 chr6 31888197 31888491 -157391063 - AluSq SINE Alu -11 302 10 234 88 0 0 chr6 31888497 31888531 -157391023 - L1MC4a LINE L1 -1869 5939 5906 329 87 0 0 chr6 31888553 31888599 -157390955 + AluSp/q SINE Alu 254 299 -4 712 264 43 22 chr6 31888599 31888875 -157390679 - L1MC4a LINE L1 -1893 5915 5634 702 211 33 17 chr6 31888884 31889064 -157390490 - L1MA4 LINE L1 -5 6295 6113 2501 67 3 0 chr6 31889064 31889361 -157390193 + AluSp SINE Alu 1 298 -15 251 157 20 0 chr6 31889361 31889412 -157390142 + (TA)n Simple_repeat Simple_repeat 1 52 0 638 150 53 0 chr6 31889412 31889545 -157390009 - L1MA4 LINE L1 -175 6125 5986 1146 245 50 18 chr6 31889586 31889925 -157389629 - L1MC4a LINE L1 -2204 5604 5255 746 124 0 0 chr6 31890114 31890219 -157389335 - FRAM SINE Alu -14 162 58 2243 114 3 0 chr6 31890228 31890525 -157389029 - AluSx SINE Alu -14 298 1 608 154 24 57 chr6 31890667 31890790 -157388764 + L1PB4 LINE L1 6000 6118 -38 256 282 36 49 chr6 31890844 31891228 -157388326 - L1MC4a LINE L1 -1617 4529 4034 222 37 0 0 chr6 31891384 31891411 -157388143 + (A)n Simple_repeat Simple_repeat 1 27 0 2105 119 20 10 chr6 31891417 31891710 -157387844 + AluSx SINE Alu 1 296 -16 558 192 29 0 chr6 31891731 31891835 -157387719 + U6 snRNA snRNA 1 107 0 803 116 70 14 chr6 31891842 31892005 -157387549 + L1MB5 LINE L1 5694 5838 -336 835 151 0 0 chr6 31892019 31892138 -157387416 - AluSg/x SINE Alu -24 288 170 1066 213 86 43 chr6 31892238 31892283 -157387271 + L1MB5 LINE L1 5837 5879 -295 2368 91 3 0 chr6 31892283 31892579 -157386975 + AluSp SINE Alu 1 297 -16 1066 213 86 43 chr6 31892579 31892857 -157386697 + L1MB5 LINE L1 5879 6174 0 2025 162 0 6 chr6 31892872 31893186 -157386368 + AluJb SINE Alu 1 312 0 217 341 49 0 chr6 31893197 31893279 -157386275 + L2 LINE L2 1101 1186 -2128 2337 109 0 0 chr6 31893309 31893612 -157385942 + AluSx SINE Alu 1 303 -9 2396 91 10 0 chr6 31893832 31894140 -157385414 - AluSp SINE Alu -2 311 1 342 347 68 9 chr6 31894307 31894529 -157385025 + L2 LINE L2 1760 1994 -1320 186 103 0 0 chr6 31894541 31894570 -157384984 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 2297 96 3 0 chr6 31894612 31894903 -157384651 + AluSg SINE Alu 1 292 -18 260 210 0 16 chr6 31894921 31894983 -157384571 - MER58 DNA MER1_type -125 90 30 2125 123 7 3 chr6 31895017 31895325 -157384229 - AluSg1 SINE Alu 0 309 1 229 295 16 0 chr6 31895407 31895468 -157384086 + L2 LINE L2 3189 3250 -22 319 321 25 31 chr6 31895641 31895803 -157383751 - MIR3 SINE MIR -6 202 42 2111 129 14 0 chr6 31897115 31897410 -157382144 + AluSp SINE Alu 1 299 -14 2167 92 13 3 chr6 31900312 31900615 -157378939 + AluSc SINE Alu 1 306 -3 305 210 50 20 chr6 31900823 31900923 -157378631 + MIR SINE MIR 57 159 -103 454 88 15 0 chr6 31901276 31901344 -157378210 - MER41A LTR ERV1 -87 467 399 356 250 167 0 chr6 31901351 31901435 -157378119 + MER115 DNA AcHobo 50 147 -546 2008 154 0 0 chr6 31901825 31902131 -157377423 + AluSx SINE Alu 1 306 -6 656 180 0 47 chr6 31902293 31902421 -157377133 - FLAM_C SINE Alu -11 122 1 2132 100 4 4 chr6 31902823 31903104 -157376450 + AluSg SINE Alu 6 286 -24 1462 51 0 17 chr6 31903235 31903411 -157376143 - AluY SINE Alu -138 173 1 2138 110 13 3 chr6 31903429 31903728 -157375826 + AluSx SINE Alu 1 302 -10 271 201 82 90 chr6 31903773 31903864 -157375690 + L2 LINE L2 1879 1970 -1344 1870 173 79 35 chr6 31903864 31904293 -157375261 + MER83 LTR ERV1 1 448 0 271 201 82 90 chr6 31904293 31904335 -157375219 + L2 LINE L2 1970 2011 -1303 1904 134 37 7 chr6 31904568 31904866 -157374688 + AluJb SINE Alu 3 309 -3 353 266 152 75 chr6 31904912 31905366 -157374188 + L1MC4a LINE L1 4903 5391 -755 521 306 93 50 chr6 31905369 31905506 -157374048 + L1MC4a LINE L1 5438 5568 -2240 2283 107 3 7 chr6 31905506 31905816 -157373738 + AluSp SINE Alu 1 309 -4 521 306 93 50 chr6 31905816 31906054 -157373500 + L1MC4a LINE L1 5568 5829 -1979 605 138 0 9 chr6 31906056 31906165 -157373389 + (GAA)n Simple_repeat Simple_repeat 1 108 0 589 286 98 19 chr6 31906204 31906470 -157373084 - L2 LINE L2 0 3313 3027 3303 164 64 22 chr6 31906512 31906779 -157372775 + L1MD2 LINE L1 5639 5893 -466 1764 166 3 24 chr6 31906779 31907113 -157372441 - AluSx SINE Alu 0 328 1 3303 164 64 22 chr6 31907113 31907466 -157372088 + L1MD2 LINE L1 5893 6294 -65 1994 150 10 0 chr6 31907466 31907773 -157371781 - AluSx SINE Alu -2 310 1 3303 164 64 22 chr6 31907773 31907841 -157371713 + L1MD2 LINE L1 6294 6358 -1 278 238 29 48 chr6 31907938 31908043 -157371511 - MLT1L LTR MaLR -379 236 134 240 268 0 0 chr6 31908255 31908311 -157371243 - L2 LINE L2 -73 3199 3144 1155 138 0 6 chr6 31908404 31908564 -157370990 + FRAM SINE Alu 1 158 -18 2283 117 3 0 chr6 31908564 31908864 -157370690 + AluSp SINE Alu 1 301 -12 337 309 20 27 chr6 31908886 31909035 -157370519 + MLT1H1 LTR MaLR 95 242 -307 1416 160 69 91 chr6 31909055 31909374 -157370180 - MLT1B LTR MaLR -2 388 77 2043 130 7 0 chr6 31909374 31909658 -157369896 + AluSx SINE Alu 8 293 -19 1416 160 69 91 chr6 31909658 31909713 -157369841 - MLT1B LTR MaLR -313 77 22 348 229 150 29 chr6 31909808 31909948 -157369606 + MLT1H1 LTR MaLR 298 454 -101 198 233 0 0 chr6 31910116 31910159 -157369395 + L3 LINE CR1 1179 1221 -356 848 165 26 104 chr6 31910329 31910371 -157369183 - MSTA LTR MaLR 0 428 384 2022 126 3 14 chr6 31910371 31910683 -157368871 + AluSx SINE Alu 1 312 0 848 165 26 104 chr6 31910683 31910800 -157368754 - MSTA LTR MaLR -44 384 290 1949 143 7 3 chr6 31910800 31911107 -157368447 - AluSq SINE Alu -5 308 1 848 165 26 104 chr6 31911107 31911176 -157368378 - MSTA LTR MaLR -138 290 217 453 132 0 121 chr6 31911181 31911272 -157368282 - MSTA LTR MaLR -348 80 1 800 216 69 53 chr6 31911341 31911586 -157367968 - L1ME3 LINE L1 -4 6158 5910 1317 204 82 29 chr6 31911599 31911942 -157367612 - L1ME3 LINE L1 -418 5744 5384 1313 139 26 92 chr6 31911953 31912226 -157367328 - AluJb SINE Alu -57 255 1 567 257 39 31 chr6 31912226 31912404 -157367150 - L1ME3 LINE L1 -760 5386 5204 2372 88 13 10 chr6 31912404 31912712 -157366842 - AluSc SINE Alu 0 309 1 567 257 39 31 chr6 31912712 31912790 -157366764 - L1ME3 LINE L1 -942 5204 5128 946 155 0 19 chr6 31912820 31912981 -157366573 - FAM SINE Alu -15 170 13 1742 118 93 15 chr6 31913297 31913429 -157366125 - AluSx SINE Alu -21 291 171 2054 109 0 30 chr6 31913429 31913731 -157365823 - AluSc SINE Alu -16 293 1 1742 118 93 15 chr6 31913731 31913868 -157365686 - AluSx SINE Alu -141 171 1 1901 107 44 4 chr6 31914268 31914540 -157365014 - AluSq SINE Alu -30 283 1 2576 235 103 45 chr6 31914568 31915547 -157364007 - HAL1 LINE L1 -342 2165 1055 2198 102 24 0 chr6 31915547 31915842 -157363712 + AluSp SINE Alu 1 302 -11 2576 235 103 45 chr6 31915842 31916152 -157363402 - HAL1 LINE L1 -1452 1055 764 539 9 9 217 chr6 31917033 31917139 -157362415 + tRNA-Leu-TTG tRNA tRNA 1 84 -2 677 0 0 0 chr6 31917581 31917653 -157361901 - tRNA-Gln-CAG tRNA tRNA -3 72 1 357 93 0 0 chr6 31918205 31918259 -157361295 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 458 174 20 0 chr6 31918807 31918905 -157360649 + CT-rich Low_complexity Low_complexity 2 101 0 207 0 0 0 chr6 31918918 31918941 -157360613 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 615 228 29 0 chr6 31918942 31919078 -157360476 - FRAM SINE Alu -39 137 1 575 69 0 0 chr6 31919561 31919633 -157359921 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 468 216 43 35 chr6 31921034 31921150 -157358404 + MER5A DNA MER1_type 73 189 0 1532 121 0 0 chr6 31921960 31922166 -157357388 + AluSg SINE Alu 2 207 -103 4944 177 14 6 chr6 32022166 32023726 -157255828 + L1PB1 LINE L1 4221 5791 -360 537 19 10 146 chr6 32023726 32023931 -157255623 + (TA)n Simple_repeat Simple_repeat 2 178 0 2518 115 0 3 chr6 32023954 32024327 -157255227 + L1PB1 LINE L1 5776 6147 -4 2754 196 0 16 chr6 32024342 32024854 -157254700 + L1 LINE L1 4802 5321 -825 1212 179 61 32 chr6 32024854 32025133 -157254421 + AluJo SINE Alu 1 287 -25 215 30 0 30 chr6 32025133 32025166 -157254388 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 2754 196 0 16 chr6 32025166 32025222 -157254332 + L1 LINE L1 5319 5362 -784 671 105 14 0 chr6 32025247 32025363 -157254191 + L1MA4A LINE L1 5315 5440 -860 640 184 9 0 chr6 32025368 32025482 -157254072 + FLAM_C SINE Alu 5 119 -24 4814 129 28 30 chr6 32025482 32026362 -157253192 + L1MA4A LINE L1 5417 6295 -8 1003 244 156 10 chr6 32026671 32026979 -157252575 + MER69 DNA AcHobo 1 353 -2173 627 254 0 0 chr6 32027367 32027509 -157252045 + MER69 DNA AcHobo 1845 1986 -540 1767 152 7 30 chr6 32027919 32028221 -157251333 + AluJo SINE Alu 1 295 -17 275 198 38 38 chr6 32028699 32028805 -157250749 + L1MDb LINE L1 1134 1239 -5170 * 3511 241 27 8 chr6 32028801 32029578 -157249976 + L1M4 LINE L1 4 795 -5747 1166 199 55 48 chr6 32029578 32029969 -157249585 + MSTB2 LTR MaLR 1 445 -11 3904 225 56 62 chr6 32029975 32030982 -157248572 + L1M4 LINE L1 790 1801 -5024 508 176 0 0 chr6 32030982 32031067 -157248487 + AluJ/FLAM SINE Alu 1 85 -227 3904 225 56 62 chr6 32031067 32032128 -157247426 + L1M4 LINE L1 1801 2952 -3873 647 235 38 92 chr6 32032124 32032216 -157247338 + L1M4 LINE L1 3493 3588 -3056 * 1970 128 3 0 chr6 32032216 32032504 -157247050 + AluSx SINE Alu 1 289 -23 647 235 38 92 chr6 32032504 32032536 -157247018 + L1M4 LINE L1 3588 3620 -3024 213 39 0 0 chr6 32032536 32032562 -157246992 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 647 235 38 92 chr6 32032562 32032866 -157246688 + L1M4 LINE L1 3620 3896 -2748 563 142 45 90 chr6 32032866 32033000 -157246554 + FLAM_A SINE Alu 1 128 -5 647 235 38 92 chr6 32033000 32033045 -157246509 + L1M4 LINE L1 3896 3942 -2702 1649 262 41 82 chr6 32033076 32033254 -157246300 + L1MB2 LINE L1 2785 2969 -3177 1753 184 3 13 chr6 32033254 32033569 -157245985 + AluJo SINE Alu 1 312 0 1649 262 41 82 chr6 32033569 32034507 -157245047 + L1MB2 LINE L1 2969 3856 -2290 311 224 82 0 chr6 32034503 32034589 -157244965 + L1MC4 LINE L1 7315 7502 -493 * 637 250 26 7 chr6 32034605 32034757 -157244797 + L1MC4 LINE L1 7315 7469 -573 280 276 20 20 chr6 32034769 32034867 -157244687 + LTR67 LTR ERVL 460 557 0 183 42 0 0 chr6 32035411 32035435 -157244119 + (TC)n Simple_repeat Simple_repeat 1 24 0 544 165 28 28 chr6 32036593 32036769 -157242785 + GA-rich Low_complexity Low_complexity 2 177 0 2545 40 40 0 chr6 32037852 32038151 -157241403 + AluY SINE Alu 1 311 0 279 0 0 0 chr6 32038154 32038185 -157241369 + (TA)n Simple_repeat Simple_repeat 2 32 0 185 94 31 0 chr6 32038466 32038498 -157241056 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1876 201 37 33 chr6 32038644 32039131 -157240423 + L1MB2 LINE L1 4823 5311 -835 8571 144 36 28 chr6 32039131 32041671 -157237883 + L1MA8 LINE L1 3726 6287 -4 3707 191 35 29 chr6 32041665 32042501 -157237053 + L1MB2 LINE L1 5296 6136 -35 * 3050 218 179 46 chr6 32042496 32043452 -157236102 - MLT-int LTR MaLR -139 1596 514 * 1606 137 82 63 chr6 32043819 32044199 -157235355 - MLT1B LTR MaLR -3 387 1 1067 183 19 33 chr6 32044274 32044487 -157235067 - MER20 DNA MER1_type 0 219 10 379 327 151 29 chr6 32047355 32047912 -157231642 - L2 LINE L2 -1172 2142 1518 334 365 39 6 chr6 32048376 32048532 -157231022 + L2 LINE L2 2924 3084 -188 924 180 148 7 chr6 32050931 32051215 -157228339 - MER33 DNA MER1_type 0 324 1 215 311 87 19 chr6 32051215 32051318 -157228236 + L2 LINE L2 3163 3272 0 457 329 83 19 chr6 32052278 32052603 -157226951 + L1MEd LINE L1 868 1213 -4906 1669 118 36 69 chr6 32053132 32053465 -157226089 + AluSx SINE Alu 1 312 0 376 277 76 66 chr6 32053533 32053938 -157225616 + MLT1J2 LTR MaLR 1 445 -5 349 303 113 22 chr6 32053942 32054312 -157225242 + L1MEd LINE L1 2139 2542 -3587 1002 163 0 6 chr6 32054316 32054482 -157225072 + FRAM SINE Alu 1 165 -11 217 309 49 0 chr6 32054907 32054988 -157224566 - L2 LINE L2 -1 3312 3228 233 331 41 41 chr6 32055134 32055279 -157224275 + MER5A DNA MER1_type 20 164 -25 212 326 35 42 chr6 32055150 32055294 -157224260 - MER5A DNA MER1_type -28 161 19 * 203 0 0 36 chr6 32055400 32055428 -157224126 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 336 143 127 0 chr6 32055451 32055514 -157224040 - LTR33 LTR ERVL -364 157 87 26 30 0 0 chr6 32055670 32055703 -157223851 + AT_rich Low_complexity Low_complexity 1 33 0 221 218 19 100 chr6 32059810 32059870 -157219684 + MER5B DNA MER1_type 5 59 -130 1817 147 0 11 chr6 32059870 32060175 -157219379 + AluJo SINE Alu 1 302 0 221 218 19 100 chr6 32060175 32060241 -157219313 + MER5B DNA MER1_type 59 129 -60 2069 127 3 0 chr6 32060254 32060538 -157219016 - AluSc SINE Alu -24 285 1 7324 54 8 43 chr6 32060989 32061619 -157217935 + SVA Other Other 2 1386 -756 7324 57 8 64 chr6 32061619 32062665 -157216889 + SVA Other Other 400 1386 0 265 328 39 8 chr6 32062920 32063048 -157216506 - L2 LINE L2 -1105 2209 2078 342 374 50 23 chr6 32063147 32063449 -157216105 + L3 LINE CR1 917 1226 -351 1055 58 29 0 chr6 32064959 32065096 -157214458 + HERVK22 LTR ERVK 4226 4366 -2471 * 52314 87 3 5 chr6 32065093 32071915 -157207639 - HERVK22 LTR ERVK -29 6808 3 1931 161 108 50 chr6 32071917 32072382 -157207172 - LTR22B LTR ERVK 0 492 1 7192 185 28 21 chr6 32072382 32073947 -157205607 + L1 LINE L1 3242 4817 -1329 1417 229 22 11 chr6 32073962 32074333 -157205221 + L1MA4 LINE L1 6 380 -6483 * 4275 69 42 0 chr6 32074319 32074871 -157204683 - THE1B-int LTR MaLR -1005 575 1 2173 121 25 27 chr6 32074871 32075236 -157204318 - THE1B LTR MaLR 0 364 1 10018 200 7 42 chr6 32075236 32075592 -157203962 + L1MA4 LINE L1 3337 3704 -3158 2419 91 13 0 chr6 32075592 32075900 -157203654 + AluSq SINE Alu 1 312 -1 10018 200 7 42 chr6 32075900 32077068 -157202486 + L1MA4 LINE L1 3704 4746 -2116 7174 22 0 0 chr6 32077068 32077871 -157201683 + L1PA3 LINE L1 5346 6153 -2 10018 200 7 42 chr6 32077871 32078772 -157200782 + L1MA4 LINE L1 4746 5677 -1185 6044 105 21 5 chr6 32178772 32179726 -157099828 + L1MA4 LINE L1 6048 7016 0 848 198 112 40 chr6 32179732 32180010 -157099544 + Charlie4a DNA MER1_type 32 329 -179 1070 107 143 36 chr6 32180100 32180324 -157099230 - MER44D DNA MER2_type -91 518 1 483 184 29 10 chr6 32180343 32180446 -157099108 + Charlie4a DNA MER1_type 404 508 0 221 372 69 40 chr6 32180477 32180751 -157098803 + L2 LINE L2 2018 2299 -1015 770 221 82 24 chr6 32180779 32180848 -157098706 + MIR SINE MIR 33 97 -165 1562 206 61 16 chr6 32180848 32181020 -157098534 + MSTD LTR MaLR 1 164 -232 2354 78 0 0 chr6 32181020 32181329 -157098225 + AluY SINE Alu 1 309 0 1562 206 61 16 chr6 32181329 32181533 -157098021 + MSTD LTR MaLR 164 395 -1 770 221 82 24 chr6 32181533 32181671 -157097883 + MIR SINE MIR 97 252 -10 215 311 137 47 chr6 32181751 32181941 -157097613 + L2 LINE L2 2684 2890 -424 436 338 121 59 chr6 32182137 32182674 -157096880 - L2 LINE L2 -19 3253 2678 750 140 75 81 chr6 32182700 32182731 -157096823 + MER3 DNA MER1_type 1 31 -178 2211 105 10 0 chr6 32182731 32183026 -157096528 + AluSg SINE Alu 1 298 -12 750 140 75 81 chr6 32183026 32183180 -157096374 + MER3 DNA MER1_type 31 185 -24 668 335 155 26 chr6 32183278 32183937 -157095617 - L2 LINE L2 -825 2489 1746 204 167 28 0 chr6 32187318 32187364 -157092190 + G-rich Low_complexity Low_complexity 5 32 0 23 0 0 0 chr6 32191668 32191691 -157087863 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr6 32191744 32191771 -157087783 + (TG)n Simple_repeat Simple_repeat 1 27 0 255 133 0 0 chr6 32194361 32194406 -157085148 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 32194931 32194966 -157084588 - MER58A DNA MER1_type -2219 201 169 1675 141 93 13 chr6 32194966 32195278 -157084276 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 32195278 32195428 -157084126 - MER58A DNA MER1_type -2251 169 9 1877 97 53 81 chr6 32195513 32195834 -157083720 - AluSx SINE Alu 0 312 1 569 196 122 20 chr6 32195892 32196040 -157083514 + Tigger1 DNA MER2_type 1 163 -2255 1723 57 102 0 chr6 32198202 32198448 -157081106 + AluY SINE Alu 21 291 -20 203 336 173 0 chr6 32198847 32198951 -157080603 - MER5B DNA MER1_type -54 124 3 935 242 35 27 chr6 32200708 32200964 -157078590 - MIR SINE MIR -2 260 3 212 382 0 30 chr6 32201068 32201199 -157078355 - L2 LINE L2 -683 2631 2505 905 174 12 0 chr6 32201679 32201840 -157077714 - FRAM SINE Alu -13 163 1 1633 102 91 4 chr6 32202069 32202333 -157077221 - THE1C LTR MaLR 0 375 89 1955 126 72 13 chr6 32202458 32202776 -157076778 - MER1B DNA MER1_type 0 337 1 483 200 142 0 chr6 32202784 32202904 -157076650 - MIR SINE MIR -6 256 120 1785 138 0 21 chr6 32203792 32204082 -157075472 - AluSx SINE Alu -24 288 5 389 308 107 18 chr6 32204931 32205100 -157074454 - MIR SINE MIR -6 256 73 261 146 0 0 chr6 32205261 32205309 -157074245 + (CA)n Simple_repeat Simple_repeat 2 49 0 2038 109 0 0 chr6 32205331 32205645 -157073909 - AluSx SINE Alu 0 314 1 9323 160 21 28 chr6 32205650 32205899 -157073655 - L1MA4A LINE L1 -1 6302 6053 2626 120 15 5 chr6 32205899 32206298 -157073256 + MER57A LTR ERV1 1 403 0 9323 160 21 28 chr6 32206298 32206778 -157072776 - L1MA4A LINE L1 -250 6053 5571 2133 60 71 0 chr6 32206778 32207061 -157072493 + AluSp SINE Alu 1 303 -10 9323 160 21 28 chr6 32207061 32207538 -157072016 - L1MA4A LINE L1 -732 5571 5093 2112 120 3 3 chr6 32207538 32207847 -157071707 - AluSg SINE Alu -1 309 1 9323 160 21 28 chr6 32207847 32208762 -157070792 - L1MA4A LINE L1 -1210 5093 4059 1822 136 0 41 chr6 32208762 32209078 -157070476 - AluSx SINE Alu -9 303 1 9323 160 21 28 chr6 32209078 32209753 -157069801 - L1MA4A LINE L1 -2244 4059 3381 704 200 36 0 chr6 32209753 32209918 -157069636 - L1MA4A LINE L1 -2687 3459 3289 2645 35 0 0 chr6 32210399 32210709 -157068845 - AluY SINE Alu -1 310 1 200 271 0 0 chr6 32210804 32210874 -157068680 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 27 0 8 0 chr6 32211136 32211204 -157068350 + AT_rich Low_complexity Low_complexity 1 27 0 2261 84 3 0 chr6 32211211 32211508 -157068046 + AluSq SINE Alu 1 298 -15 252 0 0 0 chr6 32211602 32211630 -157067924 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 33 0 0 chr6 32211696 32211726 -157067828 + MSTD LTR MaLR 1 30 -366 344 263 106 55 chr6 32211727 32211944 -157067610 - L1MC4a LINE L1 -1160 6648 6421 1159 193 93 135 chr6 32211956 32212364 -157067190 + MSTD LTR MaLR 37 428 0 477 275 93 35 chr6 32212365 32213229 -157066325 - L1MC5 LINE L1 -99 7862 7102 1261 268 39 8 chr6 32213378 32213740 -157065814 - L1MC4 LINE L1 -974 7068 6696 24 32 0 0 chr6 32213776 32213807 -157065747 + AT_rich Low_complexity Low_complexity 1 31 0 1996 126 0 10 chr6 32213846 32214155 -157065399 - AluSg SINE Alu -4 306 1 841 181 0 92 chr6 32214320 32214577 -157064977 + AluJo SINE Alu 86 312 0 558 211 106 120 chr6 32214760 32214835 -157064719 - L1MC4a LINE L1 -1758 6050 5975 1673 193 3 0 chr6 32214835 32215131 -157064423 - AluJo SINE Alu -15 297 1 558 211 106 120 chr6 32215131 32215288 -157064266 - L1MC4a LINE L1 -1833 5975 5822 1332 102 62 33 chr6 32215288 32215471 -157064083 - L1MA4A LINE L1 0 6303 6110 464 0 0 18 chr6 32215471 32215528 -157064026 + (TA)n Simple_repeat Simple_repeat 2 57 0 1332 102 62 33 chr6 32215528 32215588 -157063966 - L1MA4A LINE L1 -193 6110 6053 558 211 106 120 chr6 32215588 32215704 -157063850 - L1MC4a LINE L1 -1986 5822 5706 1966 101 0 0 chr6 32215753 32216020 -157063534 + AluSg SINE Alu 35 301 -9 198 310 75 40 chr6 32216079 32216253 -157063301 + MIR SINE MIR 68 247 -15 189 291 0 18 chr6 32216411 32216466 -157063088 - MIR SINE MIR -10 252 199 224 340 76 21 chr6 32216989 32217133 -157062421 - L2 LINE L2 -422 2892 2741 501 308 138 0 chr6 32217363 32217558 -157061996 + MIR SINE MIR 3 224 -38 453 289 71 36 chr6 32218443 32218696 -157060858 - L2 LINE L2 -86 3186 2925 2244 109 0 0 chr6 32218772 32219084 -157060470 + AluSx SINE Alu 1 312 0 23 0 0 0 chr6 32223518 32223541 -157056013 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr6 32223594 32223621 -157055933 + (TG)n Simple_repeat Simple_repeat 1 27 0 255 133 0 0 chr6 32226211 32226256 -157053298 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 32226781 32226816 -157052738 - MER58A DNA MER1_type -2219 201 169 1675 141 93 13 chr6 32226816 32227128 -157052426 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 32227128 32227278 -157052276 - MER58A DNA MER1_type -2251 169 9 1877 97 53 81 chr6 32227363 32227684 -157051870 - AluSx SINE Alu 0 312 1 569 196 122 20 chr6 32227742 32227890 -157051664 + Tigger1 DNA MER2_type 1 163 -2255 1723 57 102 0 chr6 32230052 32230298 -157049256 + AluY SINE Alu 21 291 -20 203 336 173 0 chr6 32230697 32230801 -157048753 - MER5B DNA MER1_type -54 124 3 935 242 35 27 chr6 32232558 32232814 -157046740 - MIR SINE MIR -2 260 3 212 382 0 30 chr6 32232918 32233049 -157046505 - L2 LINE L2 -683 2631 2505 905 174 12 0 chr6 32233529 32233690 -157045864 - FRAM SINE Alu -13 163 1 1633 102 91 4 chr6 32233919 32234183 -157045371 - THE1C LTR MaLR 0 375 89 1438 142 19 0 chr6 32234308 32234519 -157045035 - MER1B DNA MER1_type 0 339 125 2037 122 3 0 chr6 32334547 32334841 -156944713 + AluSx SINE Alu 1 295 -17 2156 150 17 0 chr6 32334854 32335200 -156944354 - L1PB1 LINE L1 0 6151 5800 318 303 47 51 chr6 32335256 32335510 -156944044 + L1M4 LINE L1 4579 4831 -1315 2038 89 7 17 chr6 32335594 32335885 -156943669 + AluSp SINE Alu 1 288 -25 2233 56 0 3 chr6 32335885 32336170 -156943384 + AluY SINE Alu 1 284 -27 2209 60 40 0 chr6 32336189 32336487 -156943067 + AluY SINE Alu 1 310 -1 1489 81 0 5 chr6 32336664 32336862 -156942692 - AluSg/x SINE Alu -32 278 82 1748 117 4 0 chr6 32337215 32337464 -156942090 - AluSp SINE Alu 0 313 64 1367 191 26 72 chr6 32337475 32337891 -156941663 + MSTB1 LTR MaLR 51 432 0 978 187 29 85 chr6 32337908 32338014 -156941540 + L1MC3 LINE L1 7488 7598 -187 1857 164 0 0 chr6 32338014 32338306 -156941248 + AluSx SINE Alu 1 292 -20 978 187 29 85 chr6 32338306 32338404 -156941150 + L1MC3 LINE L1 7598 7670 -115 2095 108 7 0 chr6 32338404 32338699 -156940855 + AluSx SINE Alu 1 297 -15 978 187 29 85 chr6 32338699 32338809 -156940745 + L1MC3 LINE L1 7670 7785 0 229 140 0 80 chr6 32339234 32339284 -156940270 - MLT1A2 LTR MaLR 0 374 329 2033 200 83 14 chr6 32339284 32339780 -156939774 + L1MC3 LINE L1 7232 7761 -24 225 0 0 0 chr6 32339780 32339805 -156939749 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2083 106 3 0 chr6 32339805 32340089 -156939465 - AluSp SINE Alu -28 285 1 1153 226 108 59 chr6 32341004 32341295 -156938259 - MLT1E3 LTR MaLR -234 390 76 1831 152 44 123 chr6 32341295 32341749 -156937805 + MER47B DNA MER2_type 1 418 0 1153 226 108 59 chr6 32341749 32341829 -156937725 - MLT1E3 LTR MaLR -548 76 1 1740 256 95 80 chr6 32341883 32342681 -156936873 - HERVL40 LTR ERVL -4306 1224 415 2156 109 0 3 chr6 32342795 32343097 -156936457 + AluSx SINE Alu 1 301 -11 2400 75 3 0 chr6 32343162 32343468 -156936086 + AluSp SINE Alu 5 311 -2 1140 59 20 0 chr6 32343516 32343668 -156935886 + L1PA4 LINE L1 6001 6155 0 1763 87 111 35 chr6 32343695 32343983 -156935571 + AluSg SINE Alu 1 310 0 1575 195 0 10 chr6 32344034 32344341 -156935213 - AluJo SINE Alu -8 304 1 1210 127 6 0 chr6 32344412 32344593 -156934961 - AluSx SINE Alu -130 182 1 2326 92 0 0 chr6 32344649 32344955 -156934599 - AluSq SINE Alu -5 308 3 32 0 0 0 chr6 32345180 32345212 -156934342 + GC_rich Low_complexity Low_complexity 1 32 0 2023 72 21 0 chr6 32346442 32346744 -156932810 - AluSp SINE Alu 0 308 1 202 151 57 0 chr6 32346841 32346894 -156932660 + GA-rich Low_complexity Low_complexity 5 60 0 2475 185 43 53 chr6 32347254 32347311 -156932243 - Tigger7 DNA MER2_type 0 2587 2531 1555 124 25 4 chr6 32347311 32347553 -156932001 - AluSx SINE Alu -15 297 51 2475 185 43 53 chr6 32347553 32348140 -156931414 - Tigger7 DNA MER2_type -56 2531 1940 1946 132 0 14 chr6 32348140 32348435 -156931119 - AluSx SINE Alu -21 291 1 2475 185 43 53 chr6 32348435 32348526 -156931028 - Tigger7 DNA MER2_type -647 1940 2 297 0 0 0 chr6 32348555 32348588 -156930966 + (TG)n Simple_repeat Simple_repeat 2 34 0 248 306 142 30 chr6 32348601 32348735 -156930819 - MIR3 SINE MIR -28 180 32 183 229 229 17 chr6 32348799 32348917 -156930637 + MIR SINE MIR 86 228 -34 2369 84 0 0 chr6 32349793 32350102 -156929452 - AluSg SINE Alu -1 309 1 441 0 0 0 chr6 32350232 32350281 -156929273 + (CA)n Simple_repeat Simple_repeat 2 50 0 266 266 0 0 chr6 32350684 32350748 -156928806 - L2 LINE L2 -1 3271 3208 2243 93 0 7 chr6 32351215 32351517 -156928037 - AluSc SINE Alu -9 300 1 431 230 30 0 chr6 32351743 32351843 -156927711 - MER94 DNA DNA -19 115 13 2028 112 0 0 chr6 32352124 32352564 -156926990 - AluSq SINE Alu 0 440 1 2144 88 0 3 chr6 32354033 32354377 -156925177 - AluSg SINE Alu 0 343 1 190 314 29 14 chr6 32355263 32355333 -156924221 - L3b LINE CR1 -2 1581 1511 404 236 91 0 chr6 32356205 32356315 -156923239 + Charlie4a DNA MER1_type 17 136 -372 1978 110 0 0 chr6 32356316 32356589 -156922965 + AluSg SINE Alu 2 274 -36 1333 177 47 86 chr6 32356655 32356793 -156922761 + Charlie4a DNA MER1_type 133 275 -1686 1970 102 36 0 chr6 32356793 32357099 -156922455 + AluSq SINE Alu 1 316 0 1333 177 47 86 chr6 32357099 32357163 -156922391 + Charlie4a DNA MER1_type 275 340 -1621 2234 81 24 0 chr6 32357163 32357458 -156922096 + AluSq SINE Alu 1 302 -11 1333 177 47 86 chr6 32357458 32357637 -156921917 + Charlie4a DNA MER1_type 340 501 -7 280 297 76 17 chr6 32357871 32357989 -156921565 - L2 LINE L2 -3 3310 3186 202 270 139 29 chr6 32358159 32358296 -156921258 + MIR SINE MIR 110 261 -1 531 282 113 19 chr6 32359106 32359319 -156920235 - MIR SINE MIR -10 252 20 418 278 0 26 chr6 32359796 32359911 -156919643 + MIR SINE MIR 60 171 -91 208 270 16 32 chr6 32360236 32360299 -156919255 + L2 LINE L2 3169 3230 -42 624 226 7 13 chr6 32360526 32360681 -156918873 - Charlie4a DNA MER1_type -324 184 31 993 201 61 58 chr6 32360860 32361035 -156918519 + Charlie4a DNA MER1_type 24 197 -1764 2379 78 3 0 chr6 32361035 32361341 -156918213 + AluSp SINE Alu 1 307 -6 993 201 61 58 chr6 32361341 32361520 -156918034 + Charlie4a DNA MER1_type 197 435 -1526 1686 162 0 20 chr6 32361520 32361823 -156917731 + AluJb SINE Alu 1 297 -15 993 201 61 58 chr6 32361823 32361895 -156917659 + Charlie4a DNA MER1_type 435 505 -3 2091 126 3 0 chr6 32361927 32362236 -156917318 + AluSq SINE Alu 4 313 0 204 281 0 16 chr6 32362396 32362460 -156917094 - L3b LINE CR1 -217 1366 1304 530 253 55 11 chr6 32362775 32362957 -156916597 + L1MC5 LINE L1 7261 7450 -511 517 223 70 103 chr6 32362960 32363145 -156916409 + L1MC5 LINE L1 7546 7735 -226 2111 77 24 17 chr6 32363145 32363443 -156916111 - AluY SINE Alu -11 300 1 517 223 70 103 chr6 32363443 32363469 -156916085 + L1MC5 LINE L1 7735 7760 -201 1850 146 3 3 chr6 32363469 32363777 -156915777 + AluJb SINE Alu 2 309 -3 517 223 70 103 chr6 32363777 32363935 -156915619 + L1MC5 LINE L1 7760 7905 -56 2245 71 7 3 chr6 32363935 32364229 -156915325 - AluSp SINE Alu -17 296 2 517 223 70 103 chr6 32364229 32364256 -156915298 + L1MC5 LINE L1 7905 7931 -30 2228 86 16 0 chr6 32364590 32364893 -156914661 - AluSp SINE Alu -5 308 1 2071 95 61 0 chr6 32365423 32365717 -156913837 + AluSx SINE Alu 1 312 0 243 0 0 0 chr6 32365841 32365868 -156913686 + (TG)n Simple_repeat Simple_repeat 1 27 0 2114 75 3 33 chr6 32365885 32366191 -156913363 - AluY SINE Alu -14 297 1 801 126 0 114 chr6 32366197 32366364 -156913190 - FRAM SINE Alu -1 175 28 363 302 61 47 chr6 32366412 32366690 -156912864 - L1MC4a LINE L1 -1917 5891 5610 1862 118 12 56 chr6 32367256 32367602 -156911952 - AluSq SINE Alu 0 332 1 498 253 43 12 chr6 32368295 32368457 -156911097 - MIR SINE MIR -7 255 89 961 125 0 0 chr6 32368489 32368625 -156910929 + AluSq/x SINE Alu 1 136 -177 1807 91 6 91 chr6 32368625 32368943 -156910611 + AluSc SINE Alu 1 291 -18 189 0 0 0 chr6 32369156 32369177 -156910377 + (GGA)n Simple_repeat Simple_repeat 1 21 0 925 235 35 0 chr6 32370215 32370415 -156909139 - MER3 DNA MER1_type 0 209 3 909 239 54 25 chr6 32370955 32371194 -156908360 - MIR SINE MIR -5 257 12 2223 81 14 0 chr6 32371406 32371702 -156907852 + AluSp SINE Alu 1 300 -13 1227 186 88 14 chr6 32371890 32372175 -156907379 - AluJb SINE Alu -6 306 1 583 144 0 0 chr6 32372584 32372674 -156906880 + FRAM SINE Alu 64 153 -23 413 250 56 7 chr6 32372883 32373027 -156906527 - L1MC4a LINE L1 -1936 5872 5722 309 311 25 8 chr6 32373067 32373189 -156906365 - L2 LINE L2 0 3313 3190 687 218 48 126 chr6 32373307 32373373 -156906181 - MER45C DNA AcHobo -629 952 882 713 169 0 0 chr6 32373373 32373491 -156906063 + FLAM_C SINE Alu 1 118 -15 687 218 48 126 chr6 32373491 32373598 -156905956 - MER45C DNA AcHobo -699 882 805 2434 61 0 3 chr6 32373598 32373910 -156905644 - AluY SINE Alu 0 311 1 687 218 48 126 chr6 32373910 32374006 -156905548 - MER45C DNA AcHobo -776 805 703 1365 211 11 15 chr6 32374080 32374350 -156905204 - MER45C DNA AcHobo -684 269 1 413 305 93 7 chr6 32374431 32374582 -156904972 + MIR SINE MIR 97 260 -2 2210 84 10 3 chr6 32374917 32375228 -156904326 - AluSq SINE Alu 0 313 1 2458 58 0 7 chr6 32375239 32375549 -156904005 - AluY SINE Alu -3 308 1 466 214 112 59 chr6 32375848 32376035 -156903519 + L3 LINE CR1 1265 1461 -116 398 257 47 74 chr6 32376904 32376939 -156902615 + MIR SINE MIR 84 118 -144 2381 60 7 3 chr6 32376939 32377240 -156902314 - AluSp SINE Alu -11 302 1 398 257 47 74 chr6 32377240 32377352 -156902202 + MIR SINE MIR 118 227 -35 273 231 130 0 chr6 32377393 32377501 -156902053 + L2 LINE L2 3192 3313 0 1968 80 42 18 chr6 32377684 32377970 -156901584 - AluSc SINE Alu -16 293 1 1022 58 0 29 chr6 32377970 32378107 -156901447 - AluSg SINE Alu -176 134 2 327 258 31 47 chr6 32378581 32378709 -156900845 - MIR SINE MIR -73 189 64 225 178 0 10 chr6 32379173 32379422 -156900132 + AluSx SINE Alu 1 295 -5 1964 73 36 11 chr6 32379550 32379848 -156899706 - AluY SINE Alu 0 305 1 1576 153 35 0 chr6 32379934 32380188 -156899366 + AluSx SINE Alu 1 263 -49 225 65 0 0 chr6 32380191 32380222 -156899332 + (TA)n Simple_repeat Simple_repeat 1 31 0 2119 125 0 0 chr6 32380289 32380593 -156898961 - AluSg SINE Alu -6 304 1 200 35 35 0 chr6 32380594 32380623 -156898931 + (TTC)n Simple_repeat Simple_repeat 1 30 0 700 169 73 0 chr6 32380623 32380747 -156898807 - FLAM_C SINE Alu 0 133 1 604 219 16 0 chr6 32380857 32380985 -156898569 + FLAM_A SINE Alu 1 130 -12 1697 113 20 4 chr6 32380987 32381235 -156898319 + AluSx SINE Alu 1 252 -60 949 110 14 0 chr6 32381235 32381380 -156898174 + AluSp/q SINE Alu 167 313 0 2006 123 14 0 chr6 32381577 32381869 -156897685 + AluSx SINE Alu 1 296 -16 199 229 36 84 chr6 32381908 32381991 -156897563 - L2 LINE L2 -1884 1430 1352 1680 155 54 0 chr6 32382306 32382616 -156896938 + AluSx SINE Alu 1 325 0 420 299 79 6 chr6 32383225 32383402 -156896152 + MIR SINE MIR 73 262 0 276 268 37 37 chr6 32383618 32383700 -156895854 - L2 LINE L2 -64 3249 3168 1207 158 10 5 chr6 32383741 32383950 -156895604 - AluJb SINE Alu -15 297 88 291 114 0 0 chr6 32383959 32384003 -156895551 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1126 92 7 0 chr6 32384025 32384177 -156895377 - AluSx SINE Alu -155 157 5 271 109 0 36 chr6 32384201 32384256 -156895298 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 300 355 103 0 chr6 32384300 32384534 -156895020 - L2 LINE L2 -160 3112 2855 * 415 246 77 23 chr6 32384524 32384654 -156894900 + MIR SINE MIR 15 151 -111 1696 118 7 85 chr6 32385057 32385391 -156894163 - AluSx SINE Alu 0 310 1 594 169 97 121 chr6 32385506 32385713 -156893841 + MER46C DNA MER2_type 1 202 -136 2038 102 17 0 chr6 32386090 32386385 -156893169 - AluSp SINE Alu -12 301 2 1789 132 108 41 chr6 32386829 32387171 -156892383 + MLT1A1 LTR MaLR 1 365 0 2260 72 3 16 chr6 32387248 32387552 -156892002 - AluY SINE Alu -11 300 1 2220 63 0 3 chr6 32387952 32388236 -156891318 + AluY SINE Alu 1 283 -28 222 37 0 0 chr6 32388239 32388266 -156891288 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 375 42 7 chr6 32388354 32388498 -156891056 + MIR SINE MIR 47 195 -67 2061 72 10 26 chr6 32388662 32389016 -156890538 + AluSg SINE Alu 1 310 0 2103 120 0 19 chr6 32389604 32389920 -156889634 + AluSq SINE Alu 1 310 -3 1778 96 12 20 chr6 32391060 32391310 -156888244 - AluSp SINE Alu -6 307 60 1992 209 95 62 chr6 32391313 32391905 -156887649 + MER20B DNA MER1_type 84 702 -81 1920 102 44 18 chr6 32391905 32392180 -156887374 - AluSx SINE Alu -17 295 14 1992 209 95 62 chr6 32392180 32392261 -156887293 + MER20B DNA MER1_type 702 779 -4 378 0 0 0 chr6 32392414 32392456 -156887098 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 248 0 75 chr6 32393220 32393353 -156886201 + C-rich Low_complexity Low_complexity 4 126 0 249 182 15 45 chr6 32393450 32393516 -156886038 + G-rich Low_complexity Low_complexity 4 67 0 26 0 0 0 chr6 32394072 32394098 -156885456 + GC_rich Low_complexity Low_complexity 1 26 0 549 247 29 47 chr6 32396817 32396987 -156882567 + MER69 DNA AcHobo 1 167 -1059 316 147 160 0 chr6 32396989 32397064 -156882490 + MER69 DNA AcHobo 2438 2524 -2 309 269 0 67 chr6 32398177 32398326 -156881228 + CT-rich Low_complexity Low_complexity 2 140 0 * 331 335 0 22 chr6 32398220 32398402 -156881152 + C-rich Low_complexity Low_complexity 1 178 0 339 217 14 14 chr6 32400286 32400355 -156879199 - MER5A DNA MER1_type -2 187 119 252 93 37 19 chr6 32403538 32403592 -156875962 + GA-rich Low_complexity Low_complexity 1 55 0 506 274 67 18 chr6 32406186 32406350 -156873204 - MIR SINE MIR -78 184 13 762 165 8 15 chr6 32406767 32406900 -156872654 + FLAM_C SINE Alu 1 132 -1 918 226 16 5 chr6 32407251 32407437 -156872117 - MER5A DNA MER1_type 0 189 2 795 164 28 79 chr6 32407485 32407662 -156871892 + MER20 DNA MER1_type 51 218 -1 715 251 63 26 chr6 32408387 32408578 -156870976 + MIR SINE MIR 64 261 -1 185 330 102 53 chr6 32408639 32408823 -156870731 - L2 LINE L2 -837 2477 2275 2413 104 3 0 chr6 32408823 32409132 -156870422 + AluSg SINE Alu 1 310 0 185 330 102 53 chr6 32409132 32409211 -156870343 - L2 LINE L2 -1039 2275 2201 274 306 200 19 chr6 32409237 32409397 -156870157 - MIR SINE MIR -25 237 49 1193 30 0 0 chr6 32409425 32409557 -156869997 - AluY SINE Alu -179 132 1 1303 163 21 118 chr6 32409557 32409722 -156869832 - AluJo SINE Alu -1 301 122 2094 141 0 3 chr6 32409722 32410019 -156869535 - AluSg SINE Alu -14 296 1 1303 163 21 118 chr6 32410019 32410031 -156869523 - AluJo SINE Alu -180 122 110 2157 101 0 39 chr6 32410031 32410202 -156869352 - AluSg SINE Alu -16 294 139 2469 73 3 0 chr6 32410202 32410503 -156869051 - AluSp SINE Alu -11 302 1 2157 101 0 39 chr6 32410503 32410637 -156868917 - AluSg SINE Alu -171 139 1 1303 163 21 118 chr6 32410637 32410790 -156868764 - AluJo SINE Alu -192 110 2 2181 123 7 0 chr6 32410794 32411094 -156868460 - AluSx SINE Alu -10 302 1 1950 141 7 26 chr6 32411115 32411419 -156868135 - AluSx SINE Alu -14 298 1 1810 134 32 0 chr6 32411431 32411715 -156867839 - L1MC1 LINE L1 -13 6320 6028 214 175 25 0 chr6 32411965 32412005 -156867549 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 225 363 35 18 chr6 32412142 32412255 -156867299 - MIR SINE MIR -67 141 27 231 345 78 9 chr6 32413437 32413553 -156866001 - MIR3 SINE MIR -7 201 78 2125 104 3 54 chr6 32414108 32414424 -156865130 + AluSg SINE Alu 1 300 -10 250 313 127 12 chr6 32415059 32415225 -156864329 + L3b LINE CR1 1311 1495 -88 21 36 0 0 chr6 32415949 32415977 -156863577 + AT_rich Low_complexity Low_complexity 1 28 0 791 176 7 7 chr6 32415977 32416119 -156863435 - L1PB4 LINE L1 0 6156 6015 214 284 0 30 chr6 32416965 32417032 -156862522 + CT-rich Low_complexity Low_complexity 2 66 0 291 357 74 11 chr6 32418600 32418869 -156860685 - L2 LINE L2 -181 3091 2806 463 262 41 0 chr6 32421012 32421134 -156858420 - MIR SINE MIR -50 212 86 425 236 71 36 chr6 32421981 32422324 -156857230 - LTR16A1 LTR ERVL -1 456 22 207 194 42 28 chr6 32422607 32422679 -156856875 + CT-rich Low_complexity Low_complexity 5 77 0 207 234 47 0 chr6 32422879 32422943 -156856611 + G-rich Low_complexity Low_complexity 4 70 0 473 309 123 18 chr6 32424374 32424594 -156854960 + MIR SINE MIR 12 254 -8 2391 87 23 0 chr6 32425238 32425538 -156854016 + AluSg1 SINE Alu 1 307 -2 750 216 177 12 chr6 32425759 32426013 -156853541 - Cheshire DNA MER1_type -62 2358 2063 261 139 0 0 chr6 32426083 32426126 -156853428 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 32426129 32426150 -156853404 + AT_rich Low_complexity Low_complexity 1 21 0 882 273 156 51 chr6 32426730 32427261 -156852293 - MLT1G1 LTR MaLR -8 587 1 433 217 47 36 chr6 32427947 32428136 -156851418 - MER34C LTR ERV1 0 542 368 2261 113 0 0 chr6 32428137 32428438 -156851116 + AluSx SINE Alu 1 301 -11 1379 182 4 0 chr6 32428452 32428694 -156850860 - Tigger2 DNA MER2_type -1 2717 2475 2915 141 71 18 chr6 32428748 32429231 -156850323 - Tigger2 DNA MER2_type -1955 763 244 1634 174 4 4 chr6 32429231 32429495 -156850059 - AluJb SINE Alu -15 297 34 2915 141 71 18 chr6 32429495 32429571 -156849983 - Tigger2 DNA MER2_type -2474 244 174 4640 109 52 29 chr6 32429572 32430388 -156849166 - MER4D LTR ERV1 0 903 1 2081 100 14 7 chr6 32430405 32430706 -156848848 - AluY SINE Alu 0 303 1 1706 159 0 0 chr6 32430725 32430982 -156848572 - AluJb SINE Alu -55 257 1 680 170 59 0 chr6 32430984 32431119 -156848435 - Tigger2 DNA MER2_type -2563 155 13 602 241 73 54 chr6 32431188 32431503 -156848051 - MER34C LTR ERV1 -228 357 37 1079 168 37 0 chr6 32431637 32431809 -156847745 - AluSg/x SINE Alu -3 309 128 198 0 0 0 chr6 32431809 32431831 -156847723 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1079 168 37 0 chr6 32431831 32431849 -156847705 - AluSg/x SINE Alu -184 128 112 804 239 11 6 chr6 32432176 32432356 -156847198 - LTR39 LTR ERV1 0 783 603 3874 144 67 3 chr6 32432379 32433047 -156846507 - MER50 LTR ERV1 -11 723 13 3109 147 27 52 chr6 32433056 32433078 -156846476 - LTR39 LTR ERV1 -165 618 597 1914 181 0 0 chr6 32433078 32433381 -156846173 + AluJb SINE Alu 1 303 -9 3109 147 27 52 chr6 32433381 32433450 -156846104 - LTR39 LTR ERV1 -186 597 528 2108 100 14 17 chr6 32433450 32433741 -156845813 - AluY SINE Alu -21 290 1 3109 147 27 52 chr6 32433741 32433822 -156845732 - LTR39 LTR ERV1 -255 528 446 1143 194 163 4 chr6 32433822 32434080 -156845474 + AluJo SINE Alu 1 299 -3 3109 147 27 52 chr6 32434080 32434539 -156845015 - LTR39 LTR ERV1 -337 446 1 2110 89 32 18 chr6 32435150 32435432 -156844122 - AluSg SINE Alu -24 286 1 246 105 0 0 chr6 32435778 32435816 -156843738 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 661 207 126 6 chr6 32436123 32436297 -156843257 + MIR SINE MIR 16 210 -52 2095 113 9 14 chr6 32436301 32436647 -156842907 + MER47A DNA MER2_type 23 366 0 273 350 50 0 chr6 32436999 32437099 -156842455 + MIR SINE MIR 31 135 -73 260 246 18 0 chr6 32438801 32438858 -156840696 - L2 LINE L2 0 3313 3256 242 211 18 35 chr6 32439380 32439437 -156840117 - L2 LINE L2 -191 3081 3026 23 33 0 0 chr6 32439753 32439783 -156839771 + AT_rich Low_complexity Low_complexity 1 30 0 2246 113 17 0 chr6 32439914 32440215 -156839339 - AluSx SINE Alu -6 306 1 805 182 31 0 chr6 32440245 32440404 -156839150 - L1MB7 LINE L1 -16 6168 6005 213 294 29 0 chr6 32440600 32440668 -156838886 + CT-rich Low_complexity Low_complexity 3 72 0 214 148 204 0 chr6 32440692 32440746 -156838808 - L2 LINE L2 -3 3310 3246 379 333 60 0 chr6 32440853 32441003 -156838551 - MIR SINE MIR -72 190 32 485 287 64 35 chr6 32441274 32441476 -156838078 - MER63A DNA MER1_type -2 208 1 382 328 25 8 chr6 32441497 32441619 -156837935 - MIR SINE MIR -108 154 31 865 327 71 21 chr6 32442306 32442685 -156836869 + ERVL LTR ERVL 2122 2519 -3245 2258 112 7 0 chr6 32442724 32443020 -156836534 - AluSg SINE Alu -12 298 1 688 258 0 19 chr6 32443188 32443343 -156836211 + MER63 DNA MER1_type 674 825 -237 831 225 115 16 chr6 32444194 32444438 -156835116 + MER63 DNA MER1_type 795 1062 0 272 200 0 0 chr6 32444690 32444735 -156834819 + MER63 DNA MER1_type 763 807 -254 2372 316 47 56 chr6 32444921 32445559 -156833995 + ERVL LTR ERVL 2935 3577 -2077 1734 244 72 17 chr6 32445559 32446083 -156833471 - MLT1H1 LTR MaLR 0 555 3 2372 316 47 56 chr6 32446083 32446801 -156832753 + ERVL LTR ERVL 3577 4279 -1375 2806 232 82 43 chr6 32446901 32446939 -156832615 - MER21B LTR ERV1 -48 815 780 2370 73 0 3 chr6 32446939 32447265 -156832289 - AluY SINE Alu 0 325 1 2806 232 82 43 chr6 32447265 32447991 -156831563 - MER21B LTR ERV1 -83 780 19 473 228 0 22 chr6 32448013 32448105 -156831449 - MER21B LTR ERV1 -773 90 1 204 40 0 0 chr6 32448544 32448569 -156830985 + (CA)n Simple_repeat Simple_repeat 2 26 0 858 249 6 6 chr6 32449083 32449260 -156830294 - MER8 DNA MER2_type -62 177 1 255 341 68 0 chr6 32449261 32449349 -156830205 - L2 LINE L2 -12 3301 3208 233 337 68 22 chr6 32449440 32449769 -156829785 - L2 LINE L2 -299 2973 2631 1241 282 55 10 chr6 32449769 32450152 -156829402 + MLT1I LTR MaLR 3 402 -7 201 308 48 29 chr6 32450705 32450809 -156828745 + MIR SINE MIR 25 130 -78 2496 81 3 0 chr6 32450884 32451192 -156828362 + AluSx SINE Alu 1 309 -3 26 30 0 0 chr6 32451317 32451350 -156828204 + AT_rich Low_complexity Low_complexity 1 33 0 939 263 29 24 chr6 32453481 32453922 -156825632 - L1MD3 LINE L1 -1 8041 7610 182 100 0 0 chr6 32454166 32454196 -156825358 - L2 LINE L2 -217 3055 3026 592 309 92 0 chr6 32455058 32455275 -156824279 - MIR SINE MIR -6 256 20 424 267 96 41 chr6 32455550 32455696 -156823858 - MIR SINE MIR -80 182 29 457 228 189 0 chr6 32456176 32456303 -156823251 - L1ME2 LINE L1 -9 6155 6005 536 206 37 15 chr6 32456310 32456446 -156823108 - L1ME2 LINE L1 -213 5951 5813 1885 174 0 3 chr6 32456460 32456764 -156822790 + AluJo SINE Alu 3 305 -7 242 236 0 0 chr6 32456769 32456824 -156822730 - L1ME3 LINE L1 -8 6154 6100 674 68 0 78 chr6 32456831 32456934 -156822620 + AluJb SINE Alu 209 303 -9 835 247 80 21 chr6 32456959 32457198 -156822356 + L1ME2 LINE L1 5903 6155 -9 1783 161 64 0 chr6 32457207 32457487 -156822067 - AluJo SINE Alu -14 298 1 2024 200 79 49 chr6 32457494 32457685 -156821869 - L1ME3 LINE L1 -269 5895 5711 1734 129 8 8 chr6 32457685 32457941 -156821613 + AluJb SINE Alu 5 260 -52 936 51 0 0 chr6 32457947 32458065 -156821489 + (GAA)n Simple_repeat Simple_repeat 2 119 0 2024 200 79 49 chr6 32458065 32458475 -156821079 - L1ME3 LINE L1 -457 5707 5269 1613 251 52 12 chr6 32458490 32458988 -156820566 - L1MC4a LINE L1 -585 7223 6706 1681 147 0 4 chr6 32458989 32459248 -156820306 - Tigger2 DNA MER2_type 0 2718 2461 3656 133 111 32 chr6 32459314 32459500 -156820054 - Tigger2 DNA MER2_type -1975 743 573 2066 110 20 17 chr6 32459500 32459801 -156819753 + AluSx SINE Alu 3 304 -8 3656 133 111 32 chr6 32459801 32460301 -156819253 - Tigger2 DNA MER2_type -2145 573 3 359 274 66 44 chr6 32460301 32460637 -156818917 - L1MCc LINE L1 -4889 1534 1383 306 253 62 80 chr6 32461674 32461811 -156817743 - L1ME2 LINE L1 -468 5653 5665 1861 119 50 4 chr6 32461811 32461933 -156817621 + AluSx SINE Alu 1 116 -196 233 29 0 29 chr6 32461933 32461968 -156817586 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1861 119 50 4 chr6 32461968 32462123 -156817431 + AluSx SINE Alu 116 291 -21 306 253 62 80 chr6 32462123 32462197 -156817357 - L1ME2 LINE L1 -455 5666 5592 21 0 0 0 chr6 32462197 32462218 -156817336 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 21 chr6 32462249 32462297 -156817257 + (TATAA)n Simple_repeat Simple_repeat 5 51 0 3391 142 11 9 chr6 32462745 32463288 -156816266 + LTR10A LTR ERV1 1 544 -65 4485 116 8 0 chr6 32463806 32464436 -156815118 - MER41B LTR ERV1 0 635 1 2311 192 24 2 chr6 32464472 32464889 -156814665 + MSTB LTR MaLR 1 426 0 2032 172 9 0 chr6 32465445 32465794 -156813760 + MER47A DNA MER2_type 15 366 0 218 237 17 0 chr6 32465889 32465948 -156813606 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 6266 63 5 0 chr6 32467430 32468206 -156811348 - LTR17 LTR ERV1 0 780 1 5248 172 20 19 chr6 32468618 32469443 -156810111 - MER49 LTR ERV1 0 923 95 1958 159 0 0 chr6 32469443 32469745 -156809809 - AluSx SINE Alu -10 302 1 5248 172 20 19 chr6 32469745 32469832 -156809722 - MER49 LTR ERV1 -828 95 10 316 209 99 11 chr6 32469842 32469933 -156809621 - MARNA DNA Mariner -334 252 154 246 288 0 0 chr6 32471519 32471585 -156807969 + CT-rich Low_complexity Low_complexity 1 66 0 251 393 9 0 chr6 32473366 32473478 -156806076 - L3 LINE CR1 -477 1100 988 809 239 111 57 chr6 32473595 32473892 -156805662 + MER93a LTR ERV1 90 402 0 363 306 35 21 chr6 32474047 32474191 -156805363 + MIR3 SINE MIR 31 176 -32 730 194 188 0 chr6 32474568 32474754 -156804800 + MIR SINE MIR 15 235 -27 185 227 164 62 chr6 32474874 32475002 -156804552 - MIR SINE MIR -51 211 71 253 279 0 0 chr6 32476291 32476359 -156803195 + MIR SINE MIR 85 152 -110 461 256 63 19 chr6 32476414 32476621 -156802933 + L2 LINE L2 528 743 -2571 3832 263 138 26 chr6 32476638 32477575 -156801979 + L2 LINE L2 971 1802 -1512 1721 176 90 9 chr6 32477575 32477921 -156801633 + MLT1A2 LTR MaLR 1 374 0 3832 263 138 26 chr6 32477921 32478608 -156800946 + L2 LINE L2 1802 2777 -537 1024 202 19 5 chr6 32478635 32478843 -156800711 - MER20 DNA MER1_type -8 211 1 2834 130 2 14 chr6 32478856 32479280 -156800274 - L1P3 LINE L1 -6042 419 1 1333 135 4 58 chr6 32479277 32479537 -156800017 - L1MA5 LINE L1 -241 6059 5814 * 3045 269 35 28 chr6 32479520 32480806 -156798748 - L1M4c LINE L1 -4071 2492 1052 2905 13 0 0 chr6 32480806 32481117 -156798437 - AluYa5 SINE Alu 0 311 1 3045 269 35 28 chr6 32481117 32481265 -156798289 - L1M4c LINE L1 -5511 1052 906 4077 241 66 12 chr6 32481279 32482626 -156796928 + L1M4 LINE L1 2220 3639 -2507 2385 97 3 0 chr6 32483227 32483527 -156796027 + AluSp SINE Alu 1 301 -12 1414 228 20 0 chr6 32484518 32484860 -156794694 + L1MB5 LINE L1 5817 6165 -9 2088 167 27 3 chr6 32485988 32486353 -156793201 - MLT1B LTR MaLR -16 374 1 499 270 0 0 chr6 32486538 32486649 -156792905 + MER81 DNA DNA 3 113 -1 2299 126 113 13 chr6 32488750 32489139 -156790415 - MSTA LTR MaLR 0 428 1 181 318 47 28 chr6 32489243 32489350 -156790204 - MIR SINE MIR -10 252 144 322 266 11 11 chr6 32489480 32489574 -156789980 - L1M4 LINE L1 -1308 4838 4745 604 254 84 48 chr6 32489605 32489919 -156789635 + L1MCa LINE L1 1474 1990 -4617 1141 225 31 73 chr6 32489919 32490301 -156789253 - L1M4 LINE L1 -1996 4150 3785 1814 246 59 16 chr6 32490356 32490962 -156788592 + L1M4 LINE L1 4650 5281 -865 1738 180 3 22 chr6 32491482 32491799 -156787755 - AluJb SINE Alu -1 311 1 180 245 0 0 chr6 32492132 32492185 -156787369 + (CA)n Simple_repeat Simple_repeat 1 53 0 260 185 0 15 chr6 32492397 32492462 -156787092 + GA-rich Low_complexity Low_complexity 4 67 0 296 256 87 65 chr6 32493661 32493891 -156785663 + SN5 Other centromeric 1 235 -220 2471 117 112 5 chr6 32499041 32499461 -156780093 + MER4C LTR ERV1 1 465 0 504 119 165 28 chr6 32499464 32499548 -156780006 + MER4C-int LTR ERV1 1 105 -6493 1810 158 0 13 chr6 32499548 32499859 -156779695 - AluJb SINE Alu -5 307 1 504 119 165 28 chr6 32499859 32499883 -156779671 + MER4C-int LTR ERV1 105 124 -6474 4526 146 17 20 chr6 32499883 32500596 -156778958 + MER50 LTR ERV1 1 711 -23 2059 144 129 84 chr6 32500597 32501441 -156778113 + MER4C-int LTR ERV1 121 1037 -5561 2012 206 168 0 chr6 32501441 32501964 -156777590 - LTR36 LTR ERV1 0 611 1 372 104 78 26 chr6 32501964 32502041 -156777513 + MER4C-int LTR ERV1 1034 1114 -5484 * 8519 139 59 53 chr6 32502028 32502649 -156776905 + MER4C-int LTR ERV1 1506 2121 -4477 1539 185 0 21 chr6 32502649 32502935 -156776619 + AluJb SINE Alu 13 292 -20 8519 139 59 53 chr6 32502935 32504584 -156774970 + MER4C-int LTR ERV1 2121 4800 -1798 254 83 0 42 chr6 32504602 32504650 -156774904 - PABL_A-int LTR ERV1 -1676 3339 3294 24 32 0 0 chr6 32504658 32504689 -156774865 + AT_rich Low_complexity Low_complexity 1 31 0 924 208 46 63 chr6 32504784 32505068 -156774486 - L1MC/D LINE L1 -2028 5757 5479 207 0 0 0 chr6 32505801 32505824 -156773730 + (T)n Simple_repeat Simple_repeat 1 23 0 1288 174 38 38 chr6 32506133 32506426 -156773128 + MER9 LTR ERVK 219 511 0 256 277 78 43 chr6 32507977 32508118 -156771436 + MIR SINE MIR 81 226 -36 244 224 17 0 chr6 32508468 32508526 -156771028 + (TG)n Simple_repeat Simple_repeat 2 60 0 224 241 139 46 chr6 32508822 32508930 -156770624 - MIR3 SINE MIR -53 155 38 1925 195 40 5 chr6 32509335 32509730 -156769824 + L1MB1 LINE L1 5719 6127 -41 1858 235 29 58 chr6 32509758 32510722 -156768832 - L1ME1 LINE L1 -328 5838 4940 2142 91 7 10 chr6 32510722 32511031 -156768523 + AluSg1 SINE Alu 1 308 -1 1858 235 29 58 chr6 32511031 32511208 -156768346 - L1ME1 LINE L1 -1226 4940 4759 226 382 66 7 chr6 32511280 32511432 -156768122 + MIR SINE MIR 7 167 -95 331 359 62 14 chr6 32511461 32511606 -156767948 - L2 LINE L2 -7 3306 3155 1698 222 28 8 chr6 32511949 32512324 -156767230 - L1MB7 LINE L1 -13 6171 5786 2028 202 60 14 chr6 32512324 32512770 -156766784 - MLT1C LTR MaLR 0 467 1 1698 222 28 8 chr6 32512770 32512791 -156766763 - L1MB7 LINE L1 -398 5786 5767 263 342 0 0 chr6 32513022 32513101 -156766453 - MIR SINE MIR -164 98 20 2053 159 105 0 chr6 32513463 32513816 -156765738 - MLT1B LTR MaLR 0 390 1 2040 137 0 7 chr6 32513907 32514214 -156765340 - AluSx SINE Alu -6 306 2 2347 112 21 21 chr6 32514252 32514627 -156764927 + THE1C LTR MaLR 1 375 0 323 272 132 37 chr6 32514825 32514961 -156764593 + L1M4 LINE L1 3438 3586 -2560 572 286 48 31 chr6 32515031 32515494 -156764060 - HERV16 LTR ERVL -3905 1091 596 235 207 12 24 chr6 32516240 32516322 -156763232 + L1M4 LINE L1 2900 2980 -3166 207 245 70 9 chr6 32516923 32517003 -156762551 + MIR SINE MIR 59 146 -62 1427 229 89 30 chr6 32517344 32517780 -156761774 + MLT1C LTR MaLR 6 467 0 1962 182 14 6 chr6 32521938 32522300 -156757254 + MLT1A1 LTR MaLR 1 365 0 489 237 23 0 chr6 32522604 32522735 -156756819 - MER94 DNA DNA 0 134 1 1257 191 107 105 chr6 32523179 32523608 -156755946 + MLT1C LTR MaLR 34 463 -4 1326 154 33 11 chr6 32526387 32526629 -156752925 + LTR1 LTR ERV1 565 785 0 3444 263 27 17 chr6 32526629 32528011 -156751543 + L1M1 LINE L1 3045 4450 -3115 644 129 89 0 chr6 32528011 32528135 -156751419 + L1MD1 LINE L1 6108 6242 0 256 200 50 100 chr6 32528227 32528307 -156751247 + L1ME LINE L1 5619 5694 -476 1670 156 184 19 chr6 32528777 32529142 -156750412 - MSTA LTR MaLR -3 425 1 285 185 36 0 chr6 32532649 32532711 -156746843 - L1MB1 LINE L1 -2 6664 6601 595 292 83 35 chr6 32532711 32532735 -156746819 + L2 LINE L2 2691 2712 -601 1328 180 6 84 chr6 32532735 32533058 -156746496 + AluJb SINE Alu 1 298 -4 595 292 83 35 chr6 32533058 32533492 -156746062 + L2 LINE L2 2712 3176 -137 480 272 48 7 chr6 32533523 32533670 -156745884 - MIR SINE MIR -13 249 97 3629 180 13 28 chr6 32533687 32533974 -156745580 - L1MB1 LINE L1 -61 6605 6315 2030 121 3 0 chr6 32533974 32534263 -156745291 - AluSg SINE Alu -20 290 1 3629 180 13 28 chr6 32534263 32534686 -156744868 - L1MB1 LINE L1 -351 6315 5906 269 307 112 15 chr6 32535891 32536096 -156743458 + L2 LINE L2 2922 3146 -167 29 60 0 0 chr6 32536351 32536401 -156743153 + AT_rich Low_complexity Low_complexity 1 50 0 248 178 32 70 chr6 32536438 32536623 -156742931 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 24 100 0 0 chr6 32536673 32536753 -156742801 + AT_rich Low_complexity Low_complexity 1 80 0 21 36 0 0 chr6 32537245 32537273 -156742281 + AT_rich Low_complexity Low_complexity 1 28 0 207 207 37 44 chr6 32537304 32537439 -156742115 + (TATAA)n Simple_repeat Simple_repeat 2 135 0 24 0 0 0 chr6 32537510 32537534 -156742020 + AT_rich Low_complexity Low_complexity 1 24 0 2187 100 0 7 chr6 32537865 32538165 -156741389 + AluSg SINE Alu 1 298 -12 493 335 46 0 chr6 32540079 32540276 -156739278 + MIR SINE MIR 6 211 -51 21 0 0 0 chr6 32541057 32541078 -156738476 + AT_rich Low_complexity Low_complexity 1 21 0 313 294 94 65 chr6 32541446 32541786 -156737768 - L1MB1 LINE L1 -891 5753 5404 314 320 55 20 chr6 32543121 32543321 -156736233 + MLT1L LTR MaLR 404 610 -5 439 218 27 95 chr6 32543647 32543794 -156735760 + AluSg/x SINE Alu 152 288 -21 4859 114 10 0 chr6 32543796 32544516 -156735038 + L1PA7 LINE L1 4428 5154 -992 7513 56 7 0 chr6 32544562 32545590 -156733964 + L1PA7 LINE L1 5119 6150 -4 21 0 0 0 chr6 32546960 32546981 -156732573 + AT_rich Low_complexity Low_complexity 1 21 0 1414 199 52 0 chr6 32547287 32547614 -156731940 + L1MB5 LINE L1 5821 6164 -10 2197 179 11 0 chr6 32548754 32549129 -156730425 - MLT1B LTR MaLR -11 379 1 312 300 0 11 chr6 32549313 32549403 -156730151 + MER81 DNA DNA 4 92 -22 303 244 307 36 chr6 32549626 32549958 -156729596 - L2 LINE L2 -39 3274 2853 5342 41 0 3 chr6 32551714 32552372 -156727182 - L1PA4 LINE L1 0 6155 5545 1430 25 0 0 chr6 32552372 32552534 -156727020 + L1PA4 LINE L1 5403 5564 -590 1393 215 56 24 chr6 32554166 32554523 -156725031 - MLT1B LTR MaLR 0 396 25 1244 217 46 63 chr6 32555197 32555654 -156723900 - Charlie1b DNA MER1_type -38 485 37 350 267 85 28 chr6 32556142 32556318 -156723236 - L1MB1 LINE L1 -1214 5430 5245 609 322 15 18 chr6 32556351 32556677 -156722877 + L1MEc LINE L1 1451 1775 -4621 1167 214 42 50 chr6 32556709 32557046 -156722508 - L1MB1 LINE L1 -2028 4616 4283 1955 263 21 26 chr6 32557085 32557740 -156721814 + L1M4 LINE L1 4629 5280 -866 1445 172 15 4 chr6 32558845 32559107 -156720447 - MLT1B LTR MaLR -11 379 115 3870 246 27 55 chr6 32559248 32560421 -156719133 - L1MB1 LINE L1 -5401 1141 2 4157 145 28 2 chr6 32560423 32561042 -156718512 - MER41B LTR ERV1 0 635 1 578 265 50 42 chr6 32561162 32561481 -156718073 - L1MDa LINE L1 -4372 2168 1883 1827 202 23 8 chr6 32562426 32562777 -156716777 + MLT1A1 LTR MaLR 7 362 -3 2785 221 25 7 chr6 32562823 32563375 -156716179 - REP3 LTR ERV 0 562 1 202 229 16 16 chr6 32563542 32563603 -156715951 + CT-rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr6 32565475 32565496 -156714058 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 94 36 chr6 32565653 32565929 -156713625 - L1MC4 LINE L1 -3 8039 7748 2088 107 0 40 chr6 32565929 32566228 -156713326 + AluSq SINE Alu 1 287 -26 24 0 0 0 chr6 32566233 32566257 -156713297 + AT_rich Low_complexity Low_complexity 1 24 0 304 285 168 74 chr6 32566996 32567252 -156712302 - L1ME3A LINE L1 -3 6167 5888 437 279 121 6 chr6 32567641 32567806 -156711748 - MIR SINE MIR -29 233 50 521 288 95 31 chr6 32568050 32568272 -156711282 - MIR SINE MIR -13 249 14 1786 199 38 28 chr6 32568746 32569168 -156710386 - L1ME2 LINE L1 -1 6163 5738 1374 257 73 75 chr6 32569168 32569728 -156709826 + MLT1F1 LTR MaLR 1 559 -8 593 185 15 0 chr6 32569736 32569866 -156709688 - L1ME2 LINE L1 -422 5742 5611 255 213 0 0 chr6 32569862 32569909 -156709645 - L1M3 LINE L1 -709 5969 5923 * 2425 39 43 0 chr6 32569924 32570206 -156709348 - AluY SINE Alu -17 294 1 2084 133 3 0 chr6 32570206 32570498 -156709056 - AluSx SINE Alu -18 294 1 1043 180 74 5 chr6 32570523 32570547 -156709007 - L1MA9 LINE L1 -40 6272 6251 1912 107 7 4 chr6 32570547 32570818 -156708736 - AluSx SINE Alu -3 309 38 1043 180 74 5 chr6 32570818 32571010 -156708544 - L1MA9 LINE L1 -61 6251 6041 * 1343 208 85 11 chr6 32571002 32571482 -156708072 - L1M3 LINE L1 -719 5941 5434 325 0 0 0 chr6 32571512 32571547 -156708007 - U2 snRNA snRNA -153 35 1 599 232 0 7 chr6 32571600 32571738 -156707816 - L1M3 LINE L1 -1213 5431 5295 * 884 236 137 19 chr6 32571737 32572059 -156707495 - L1ME LINE L1 -407 5759 5400 386 229 115 0 chr6 32572059 32572155 -156707399 - MLT2B3 LTR ERVL -323 231 125 544 263 96 50 chr6 32572162 32572674 -156706880 - L1M3 LINE L1 -5296 1250 713 300 311 11 50 chr6 32573040 32573220 -156706334 - L1M3 LINE L1 -6362 180 8 201 122 27 68 chr6 32573221 32573295 -156706259 + T-rich Low_complexity Low_complexity 1 71 0 1100 290 60 37 chr6 32573350 32574006 -156705548 - L1MEc LINE L1 -4333 2063 1393 5059 150 31 13 chr6 32574099 32575884 -156703670 - L1PA15 LINE L1 -1 6164 4351 2191 125 0 0 chr6 32576512 32576817 -156702737 + AluSx SINE Alu 1 305 -7 1357 198 72 52 chr6 32577106 32577454 -156702100 - L1MC1 LINE L1 -40 6293 5939 2557 74 0 3 chr6 32578134 32578444 -156701110 + AluSc SINE Alu 1 309 0 205 210 12 62 chr6 32580986 32581067 -156698487 + CT-rich Low_complexity Low_complexity 3 79 0 2238 107 13 0 chr6 32581146 32581445 -156698109 + AluSq SINE Alu 1 303 -10 345 369 12 31 chr6 32581890 32582050 -156697504 - MIR3 SINE MIR -9 199 43 2501 115 19 25 chr6 32582064 32582428 -156697126 - THE1B LTR MaLR 0 364 3 1833 206 58 94 chr6 32582732 32583335 -156696219 + L1ME1 LINE L1 5582 6162 -4 434 316 26 94 chr6 32584368 32584504 -156695050 - MIR SINE MIR -10 252 108 195 42 0 0 chr6 32584504 32584528 -156695026 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2264 118 44 0 chr6 32584535 32584856 -156694698 + L1PA15 LINE L1 5825 6159 -6 434 316 26 94 chr6 32584856 32584977 -156694577 - MIR SINE MIR -160 102 5 198 339 27 45 chr6 32586570 32586682 -156692872 + MIR SINE MIR 25 134 -128 21 36 0 0 chr6 32588334 32588362 -156691192 + AT_rich Low_complexity Low_complexity 1 28 0 914 253 56 45 chr6 32588708 32589083 -156690471 + L1MC4 LINE L1 7450 7828 -214 3380 24 0 0 chr6 32589091 32589472 -156690082 - L1P2 LINE L1 -342 5813 5433 379 294 84 8 chr6 32589641 32589760 -156689794 + MIR SINE MIR 16 143 -65 2983 238 11 27 chr6 32589766 32590429 -156689125 + MER82 DNA MER2_type 1 652 -1 906 158 19 0 chr6 32591853 32592011 -156687543 + L1MA8 LINE L1 3748 3908 -2238 * 5868 151 26 11 chr6 32592008 32593397 -156686157 + L1MA8 LINE L1 4874 6286 -5 24 0 0 0 chr6 32595241 32595265 -156684289 + AT_rich Low_complexity Low_complexity 1 24 0 1912 119 24 7 chr6 32595635 32595929 -156683625 - L1PB4 LINE L1 -6 6150 5852 234 296 8 104 chr6 32595949 32596074 -156683480 + L3 LINE CR1 1423 1535 -42 235 348 101 40 chr6 32596469 32596696 -156682858 + L2 LINE L2 2638 2878 -436 282 435 36 0 chr6 32596928 32597066 -156682488 + L2 LINE L2 3116 3258 -14 264 256 24 143 chr6 32597571 32597665 -156681889 + L2 LINE L2 2909 2976 -296 2549 64 0 6 chr6 32597665 32597977 -156681577 - AluY SINE Alu -1 310 1 264 256 24 143 chr6 32597977 32598050 -156681504 + L2 LINE L2 2976 3056 -216 191 36 36 0 chr6 32598688 32598716 -156680838 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2318 89 6 0 chr6 32599908 32600221 -156679333 - L1PA13 LINE L1 -5 6158 5844 21 57 0 0 chr6 32600255 32600290 -156679264 + AT_rich Low_complexity Low_complexity 1 35 0 614 213 66 119 chr6 32600681 32601108 -156678446 - L1MC5 LINE L1 -50 7911 7508 311 291 4 58 chr6 32601153 32601331 -156678223 - L1MC4 LINE L1 -441 7447 7201 278 300 10 30 chr6 32601498 32601598 -156677956 - MLT1J LTR MaLR -68 443 346 574 173 87 16 chr6 32601609 32601736 -156677818 - THE1C LTR MaLR -239 136 1 332 285 39 0 chr6 32601815 32601945 -156677609 - LTR67 LTR ERVL -12 545 411 1585 189 0 6 chr6 32602314 32602642 -156676912 - L1P5 LINE L1 -813 5333 5008 * 2338 136 5 22 chr6 32602637 32603041 -156676513 + L1P5 LINE L1 5349 5745 -411 246 172 52 0 chr6 32603037 32603095 -156676459 - L1MCa LINE L1 -4368 2058 1998 * 1968 176 47 39 chr6 32603102 32603804 -156675750 - L1MCa LINE L1 -4499 1927 1127 8720 200 45 30 chr6 32603830 32606613 -156672941 - L1MA9 LINE L1 -7 6305 3477 465 261 96 27 chr6 32606750 32606938 -156672616 + MLT1G LTR MaLR 389 589 -1 21 0 0 0 chr6 32607290 32607311 -156672243 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 32607847 32607875 -156671679 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 32609329 32609357 -156670197 + AT_rich Low_complexity Low_complexity 1 28 0 1928 137 14 0 chr6 32609469 32609754 -156669800 - AluSx SINE Alu -12 300 12 21 57 0 0 chr6 32611023 32611058 -156668496 + AT_rich Low_complexity Low_complexity 1 35 0 13914 226 37 21 chr6 32611943 32615630 -156663924 - L1PA12 LINE L1 -1378 6206 2461 7382 240 21 16 chr6 32615679 32617328 -156662226 - L1PA12 LINE L1 -5924 1657 2 664 324 41 5 chr6 32617365 32617584 -156661970 - MIR SINE MIR -3 259 33 717 179 26 0 chr6 32617762 32617879 -156661675 + MER45 DNA AcHobo 9 128 -1453 9073 77 3 1 chr6 32617881 32619894 -156659660 - L1PA7 LINE L1 -2 6152 4141 688 299 111 0 chr6 32619995 32620202 -156659352 + MIR SINE MIR 3 232 -30 504 286 29 39 chr6 32620284 32620491 -156659063 + MLT1H1 LTR MaLR 1 208 -338 1519 319 75 15 chr6 32620505 32621962 -156657592 - HERVL LTR ERVL -3106 2548 900 272 159 0 0 chr6 32622213 32622257 -156657297 - MLT2C2 LTR ERVL 0 464 421 * 713 199 72 18 chr6 32622255 32622421 -156657133 - MLT2B1 LTR ERVL -343 177 3 4194 212 62 13 chr6 32622879 32624364 -156655190 - L1MA10 LINE L1 -11 6323 4757 1862 200 49 30 chr6 32624383 32624877 -156654677 + L1 LINE L1 4297 4799 -1347 1922 155 3 19 chr6 32625034 32625350 -156654204 + AluSx SINE Alu 1 311 -1 349 315 61 90 chr6 32625429 32625775 -156653779 + MLT1H1-int LTR MaLR 1022 1357 -14 369 237 101 8 chr6 32625788 32625913 -156653641 + MLT1H1 LTR MaLR 1 188 -361 330 26 0 0 chr6 32626029 32626068 -156653486 + (GA)n Simple_repeat Simple_repeat 1 39 0 537 232 56 14 chr6 32626073 32626215 -156653339 + MLT1G LTR MaLR 442 589 -1 1038 250 80 9 chr6 32627723 32628047 -156651507 + L1MC4a LINE L1 5520 5866 -1942 23 0 0 0 chr6 32628317 32628340 -156651214 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr6 32631702 32631730 -156647824 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr6 32632530 32632563 -156646991 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 32632836 32632870 -156646684 + AT_rich Low_complexity Low_complexity 1 34 0 30 59 0 0 chr6 32633095 32633146 -156646408 + AT_rich Low_complexity Low_complexity 1 51 0 812 216 5 44 chr6 32633147 32633351 -156646203 - AluJo SINE Alu 0 312 117 614 327 45 5 chr6 32633367 32633587 -156645967 - MIR SINE MIR -3 259 31 1848 115 67 11 chr6 32634009 32634319 -156645235 + AluSx SINE Alu 1 312 0 8404 219 74 2 chr6 32634422 32636197 -156643357 + L1M2 LINE L1 2 1905 -4944 1168 125 40 0 chr6 32737626 32737802 -156541752 + LTR1 LTR ERV1 603 785 0 27 49 0 0 chr6 32737934 32737975 -156541579 + AT_rich Low_complexity Low_complexity 1 41 0 2208 110 0 0 chr6 32737975 32738256 -156541298 + AluSx SINE Alu 1 281 -31 252 143 0 0 chr6 32738258 32738300 -156541254 + (TA)n Simple_repeat Simple_repeat 2 43 0 366 260 13 87 chr6 32738309 32738459 -156541095 - L2 LINE L2 -32 3281 3143 297 238 12 24 chr6 32738805 32738889 -156540665 - MLT1H LTR MaLR -458 91 9 235 313 20 20 chr6 32738915 32739014 -156540540 - MLT1H-int LTR MaLR -23 1348 1250 3926 86 34 9 chr6 32739063 32739619 -156539935 + LTR19B LTR ERV1 1 570 -10 260 0 57 0 chr6 32739620 32739655 -156539899 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 2054 118 16 10 chr6 32739658 32739963 -156539591 - AluSc SINE Alu -2 307 1 613 292 60 45 chr6 32740578 32741299 -156538255 + L1M4 LINE L1 1169 2065 -4760 1536 114 0 0 chr6 32742096 32742298 -156537256 + AluSg/x SINE Alu 96 297 -13 209 319 6 41 chr6 32743725 32743894 -156535660 + (TCTCTG)n Simple_repeat Simple_repeat 6 168 0 * 252 296 0 38 chr6 32743809 32743968 -156535586 + CT-rich Low_complexity Low_complexity 3 155 0 195 100 0 0 chr6 32744006 32744036 -156535518 + (TG)n Simple_repeat Simple_repeat 2 31 0 421 189 0 0 chr6 32744572 32744646 -156534908 - MER30 DNA MER1_type 0 230 157 299 216 14 40 chr6 32744992 32745066 -156534488 + MLT1J1 LTR MaLR 67 138 -308 3975 131 56 9 chr6 32745392 32745569 -156533985 - L1MA7 LINE L1 -2 6289 6122 1533 188 83 22 chr6 32745569 32745893 -156533661 - MER2 DNA MER2_type 0 344 1 3975 131 56 9 chr6 32745893 32746380 -156533174 - L1MA7 LINE L1 -169 6122 5594 689 284 53 13 chr6 32746491 32746716 -156532838 + LTR16A LTR ERVL 32 265 -185 287 222 42 127 chr6 32746890 32747079 -156532475 - HAL1b LINE L1 -464 884 712 611 298 107 32 chr6 32747173 32747837 -156531717 - HAL1 LINE L1 -725 1782 1069 185 379 0 0 chr6 32748170 32748228 -156531326 + L2 LINE L2 3134 3191 -81 977 235 94 52 chr6 32748586 32749105 -156530449 - L1MC5 LINE L1 -44 7917 7377 252 86 0 0 chr6 32749289 32749324 -156530230 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 850 80 0 80 chr6 32749327 32749465 -156530089 - AluJo/FRAM SINE Alu -30 282 156 274 208 180 14 chr6 32749465 32749548 -156530006 - AluJ/FLAM SINE Alu -215 87 3 21 36 0 0 chr6 32749622 32749650 -156529904 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr6 32749672 32749702 -156529852 + AT_rich Low_complexity Low_complexity 1 30 0 300 91 0 0 chr6 32749940 32749984 -156529570 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr6 32750020 32750046 -156529508 + AT_rich Low_complexity Low_complexity 1 26 0 2052 132 19 12 chr6 32750158 32750477 -156529077 - L1MC1 LINE L1 0 6333 6013 282 296 96 30 chr6 32750923 32751058 -156528496 - MIR SINE MIR -27 235 92 33 25 0 0 chr6 32751541 32751581 -156527973 + AT_rich Low_complexity Low_complexity 1 40 0 2109 117 21 0 chr6 32751584 32751874 -156527680 - AluSq SINE Alu -17 296 1 295 333 93 0 chr6 32754346 32754454 -156525100 + L2 LINE L2 3180 3297 -16 1007 226 25 25 chr6 32756022 32756159 -156523395 + ORSL DNA AcHobo 1 137 -138 2453 40 7 10 chr6 32756159 32756455 -156523099 + AluY SINE Alu 1 295 -16 1007 226 25 25 chr6 32756455 32756592 -156522962 + ORSL DNA AcHobo 136 275 0 2268 71 0 0 chr6 32758712 32759028 -156520526 - AluY SINE Alu 0 316 1 22 0 0 0 chr6 32759030 32759052 -156520502 + AT_rich Low_complexity Low_complexity 1 22 0 2127 200 41 30 chr6 32759381 32759846 -156519708 + MER90 LTR ERV1 5 474 -140 1088 245 39 57 chr6 32759850 32760234 -156519320 + MLT2C1 LTR ERVL 3 379 -18 647 223 8 0 chr6 32760234 32760364 -156519190 + MER90 LTR ERV1 443 573 -2 404 250 10 0 chr6 32760446 32760542 -156519012 - MIR SINE MIR -108 154 58 1953 79 0 86 chr6 32761257 32761561 -156517993 + AluSc SINE Alu 30 307 -2 25 51 0 0 chr6 32761905 32761944 -156517610 + AT_rich Low_complexity Low_complexity 1 39 0 184 316 51 51 chr6 32761971 32762129 -156517425 + MIR SINE MIR 79 236 -26 292 221 48 37 chr6 32762330 32762447 -156517107 - MLT1H LTR MaLR 0 530 435 941 202 27 6 chr6 32762452 32762635 -156516919 + MER20 DNA MER1_type 30 216 -3 368 258 31 0 chr6 32762672 32762769 -156516785 - L1MEc LINE L1 -4602 1794 1695 21 0 0 0 chr6 32763034 32763055 -156516499 + AT_rich Low_complexity Low_complexity 1 21 0 720 207 0 36 chr6 32763347 32763448 -156516106 + FLAM_A SINE Alu 1 97 -214 2240 140 6 48 chr6 32763448 32763806 -156515748 - MER61A LTR ERV1 0 343 1 720 207 0 36 chr6 32763806 32763844 -156515710 + FLAM_A SINE Alu 97 135 -176 606 244 61 29 chr6 32764322 32764766 -156514788 + L1MEc LINE L1 1865 2434 -3890 * 1307 103 47 0 chr6 32764744 32764958 -156514596 - L1M1 LINE L1 -4263 3302 3079 4296 58 4 0 chr6 32764960 32765491 -156514063 - L1PA7 LINE L1 -180 5974 5442 * 5471 95 3 0 chr6 32765483 32766230 -156513324 + L1P LINE L1 4221 4969 -1177 2836 142 33 3 chr6 32766441 32767112 -156512442 + L1P4 LINE L1 2300 5467 -701 529 61 0 0 chr6 32767111 32767177 -156512377 - L1P LINE L1 -1162 4984 4919 * 15176 127 43 5 chr6 32769275 32771598 -156507956 - Tigger1 DNA MER2_type -7 2411 1 293 304 24 12 chr6 32772795 32772963 -156506591 + CT-rich Low_complexity Low_complexity 2 171 0 234 163 0 0 chr6 32773076 32773125 -156506429 + L1MC4 LINE L1 6655 6703 -1339 219 267 48 27 chr6 32773217 32773363 -156506191 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 308 309 21 10 chr6 32773521 32773618 -156505936 - MLT1K LTR MaLR -350 238 141 201 121 0 0 chr6 32773748 32773781 -156505773 + (TC)n Simple_repeat Simple_repeat 2 34 0 453 379 37 12 chr6 32774607 32774934 -156504620 + L2 LINE L2 2454 2788 -526 478 286 58 44 chr6 32775033 32775239 -156504315 - MLT1J2 LTR MaLR -2 448 240 322 289 102 24 chr6 32775252 32775483 -156504071 - MLT1J LTR MaLR -198 211 2 239 317 140 62 chr6 32775483 32775726 -156503828 + L2 LINE L2 2884 3145 -168 23 33 0 0 chr6 32776226 32776256 -156503298 + AT_rich Low_complexity Low_complexity 1 30 0 465 253 124 34 chr6 32776518 32776696 -156502858 + L2 LINE L2 3114 3307 -6 336 338 58 36 chr6 32776991 32777299 -156502255 - L1M4 LINE L1 -1760 4386 4072 189 0 0 0 chr6 32778213 32778234 -156501320 + (A)n Simple_repeat Simple_repeat 1 21 0 2700 26 7 0 chr6 32778527 32778835 -156500719 - AluY SINE Alu -1 310 1 351 373 64 16 chr6 32779182 32779496 -156500058 + L2 LINE L2 2846 3174 -139 267 31 0 0 chr6 32779936 32779968 -156499586 + (CA)n Simple_repeat Simple_repeat 2 33 0 2813 20 0 0 chr6 32780251 32780557 -156498997 + AluY SINE Alu 1 306 -5 300 49 49 0 chr6 32780756 32780797 -156498757 + THE1A LTR MaLR 3 45 -310 230 347 85 35 chr6 32780847 32781046 -156498508 + L2 LINE L2 2616 2824 -490 268 358 57 24 chr6 32781387 32781510 -156498044 + L2 LINE L2 3142 3268 -4 454 246 172 0 chr6 32782263 32782397 -156497157 - MIR SINE MIR -54 208 52 191 306 162 36 chr6 32782429 32782540 -156497014 + MIR3 SINE MIR 52 176 -32 599 326 101 0 chr6 32782869 32783047 -156496507 - MER91A DNA MER1_type 0 196 1 22 25 0 25 chr6 32783057 32783084 -156496470 + AT_rich Low_complexity Low_complexity 1 28 -11 2272 106 0 6 chr6 32783084 32783395 -156496159 - AluSx SINE Alu -3 309 1 22 25 0 25 chr6 32783395 32783407 -156496147 + AT_rich Low_complexity Low_complexity 28 39 0 1930 133 14 3 chr6 32783407 32783692 -156495862 - AluJo SINE Alu -24 288 1 2050 119 20 3 chr6 32783872 32784165 -156495389 - AluSg SINE Alu -12 298 1 218 216 20 20 chr6 32784695 32784746 -156494808 + L2 LINE L2 3263 3313 0 255 61 0 0 chr6 32786095 32786128 -156493426 + (GGA)n Simple_repeat Simple_repeat 1 33 0 509 252 41 27 chr6 32787282 32787429 -156492125 + MIR SINE MIR 16 164 -98 328 241 62 45 chr6 32787429 32787541 -156492013 + L1M4 LINE L1 5443 5556 -618 355 221 0 26 chr6 32787620 32787697 -156491857 + MIR SINE MIR 173 247 -15 568 178 0 10 chr6 32787956 32788057 -156491497 + MIR3 SINE MIR 81 180 -28 514 288 58 41 chr6 32788468 32789059 -156490495 - L1P2 LINE L1 -593 5561 4336 385 315 10 0 chr6 32789059 32789178 -156490376 + MIR SINE MIR 30 148 -62 216 313 0 0 chr6 32790954 32791018 -156488536 + (TG)n Simple_repeat Simple_repeat 2 65 0 2487 72 7 0 chr6 32791113 32791417 -156488137 - AluSx SINE Alu -6 306 1 1881 140 13 48 chr6 32791965 32792279 -156487275 + AluSx SINE Alu 1 303 -9 5137 124 22 2 chr6 32792307 32793095 -156486459 + L1PA15 LINE L1 5357 6159 -6 24 0 0 0 chr6 32793095 32793119 -156486435 + AT_rich Low_complexity Low_complexity 1 24 0 498 297 101 0 chr6 32794437 32794575 -156484979 + L2 LINE L2 3117 3268 -4 1231 259 37 25 chr6 32794936 32795291 -156484263 - MER21B LTR ERV1 -51 812 454 1163 124 88 0 chr6 32795291 32795485 -156484069 - L1MA5A LINE L1 -19 6278 6068 1475 219 119 29 chr6 32795501 32795922 -156483632 - MER21B LTR ERV1 -382 481 23 231 74 74 0 chr6 32795958 32796012 -156483542 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 205 281 122 0 chr6 32796630 32796712 -156482842 - MER5B DNA MER1_type -60 118 27 440 312 32 48 chr6 32796799 32796985 -156482569 + MER5A DNA MER1_type 1 183 -6 635 62 0 0 chr6 32798028 32798108 -156481446 + MADE1 DNA Mariner 1 80 0 442 208 17 42 chr6 32800611 32800731 -156478823 + MIR SINE MIR 142 258 -4 537 297 18 6 chr6 32800893 32801058 -156478496 - MIR SINE MIR -10 252 86 186 43 0 0 chr6 32801515 32801538 -156478016 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 2297 106 3 6 chr6 32801630 32801942 -156477612 - AluSq SINE Alu -2 311 1 222 37 0 0 chr6 32802373 32802400 -156477154 + (TG)n Simple_repeat Simple_repeat 1 27 0 302 241 28 0 chr6 32802415 32802560 -156476994 + GA-rich Low_complexity Low_complexity 1 149 0 259 259 17 0 chr6 32802642 32802700 -156476854 - L3 LINE CR1 -16 1561 1503 460 301 78 25 chr6 32803380 32803808 -156475746 - LTR33 LTR ERVL -8 513 12 490 329 48 28 chr6 32803987 32804276 -156475278 - L1M4 LINE L1 -1534 4612 4318 3541 168 18 6 chr6 32804280 32804946 -156474608 - L1MB2 LINE L1 -7 6164 5491 373 157 0 22 chr6 32804947 32805036 -156474518 + CT-rich Low_complexity Low_complexity 3 89 0 717 192 41 48 chr6 32805036 32805302 -156474252 - L1MB2 LINE L1 -682 5489 5225 424 323 135 17 chr6 32805319 32805398 -156474156 - L1M4 LINE L1 -1805 4341 4273 210 118 0 0 chr6 32805398 32805432 -156474122 + (TTG)n Simple_repeat Simple_repeat 1 34 0 424 323 135 17 chr6 32805432 32805640 -156473914 - L1M4 LINE L1 -1873 4273 4020 4126 157 67 48 chr6 32805641 32806343 -156473211 - L1MD1 LINE L1 -30 6606 5919 2445 74 0 0 chr6 32806343 32806641 -156472913 - AluY SINE Alu -13 298 1 4126 157 67 48 chr6 32806641 32806839 -156472715 - L1MD1 LINE L1 -717 5919 5726 1627 126 152 4 chr6 32806839 32807102 -156472452 - AluSx SINE Alu 0 302 1 4126 157 67 48 chr6 32807102 32807424 -156472130 - L1MD1 LINE L1 -910 5726 5360 306 148 23 45 chr6 32807565 32807653 -156471901 - L1MD1 LINE L1 -2868 3672 3587 1841 149 0 4 chr6 32807653 32807928 -156471626 - AluSx SINE Alu -38 274 1 232 219 96 0 chr6 32807928 32808001 -156471553 - L1MD1 LINE L1 -3020 3520 3441 669 88 0 39 chr6 32808007 32808109 -156471445 - FLAM_A SINE Alu -12 130 33 354 179 0 0 chr6 32808116 32808194 -156471360 - L1MD1 LINE L1 -3106 3434 3357 6773 97 11 18 chr6 32808212 32809038 -156470516 - L1MA1 LINE L1 -7 6295 5477 2231 107 0 0 chr6 32809038 32809329 -156470225 - AluSx SINE Alu -21 291 1 6773 97 11 18 chr6 32809329 32809610 -156469944 - L1MA1 LINE L1 -825 5477 5196 940 199 45 14 chr6 32809614 32809900 -156469654 - L1MD1 LINE L1 -3177 3363 3069 * 3613 137 60 26 chr6 32809874 32810562 -156468992 + L1PA15 LINE L1 5342 6052 -113 1539 208 22 96 chr6 32810576 32810871 -156468683 - L1M4 LINE L1 -3311 2835 2612 2362 65 7 10 chr6 32810871 32811181 -156468373 - AluY SINE Alu -2 309 1 1539 208 22 96 chr6 32811181 32811529 -156468025 - L1M4 LINE L1 -3534 2612 2240 1853 144 44 13 chr6 32811541 32811839 -156467715 - AluSx SINE Alu -5 307 1 226 43 0 65 chr6 32811862 32811908 -156467646 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 241 158 0 0 chr6 32811912 32811950 -156467604 - Alu SINE Alu -262 38 1 729 199 6 0 chr6 32812021 32812177 -156467377 - L1MA3 LINE L1 -2 6303 6147 980 197 35 102 chr6 32812191 32812562 -156466992 - MLT1A2 LTR MaLR -11 363 18 2153 141 72 27 chr6 32812582 32813093 -156466461 - L1MD1 LINE L1 -4019 2521 1988 2405 204 29 50 chr6 32813129 32813711 -156465843 - L1MD1 LINE L1 -5945 595 26 290 308 45 24 chr6 32813724 32814059 -156465495 - L1MEd LINE L1 -2143 4397 4056 475 258 99 22 chr6 32814136 32814450 -156465104 - L1MEd LINE L1 -2929 3611 3274 299 171 198 36 chr6 32814465 32814576 -156464978 - L1MC4 LINE L1 0 8042 7914 739 239 42 35 chr6 32814709 32814998 -156464556 - L1MC4 LINE L1 -167 7875 7585 349 304 0 6 chr6 32815089 32815250 -156464304 - L1MEd LINE L1 -3562 2978 2819 2348 109 0 6 chr6 32815297 32815610 -156463944 - AluSq SINE Alu -2 311 1 2025 134 3 0 chr6 32815643 32815966 -156463588 + AluSq SINE Alu 1 324 0 2127 105 7 24 chr6 32815973 32816269 -156463285 + AluSx SINE Alu 1 291 -21 7272 166 21 0 chr6 32816409 32817121 -156462433 + L1PA13 LINE L1 3943 4638 -1525 2095 96 3 14 chr6 32817121 32817414 -156462140 - AluSp SINE Alu -23 290 1 7272 166 21 0 chr6 32817414 32818914 -156460640 + L1PA13 LINE L1 4638 6158 -5 296 325 63 0 chr6 32819481 32819672 -156459882 - HAL1 LINE L1 -854 1653 1451 1421 99 59 36 chr6 32819703 32819925 -156459629 - AluSx SINE Alu -83 229 3 455 329 93 33 chr6 32819965 32820427 -156459127 - L1MEd LINE L1 -4841 1699 1226 234 0 0 0 chr6 32822237 32822263 -156457291 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 440 296 51 34 chr6 32823796 32823972 -156455582 + MER5A DNA MER1_type 8 186 -3 2354 93 0 0 chr6 32824202 32824503 -156455051 - AluSg SINE Alu -9 301 1 365 253 11 0 chr6 32824931 32825018 -156454536 - Charlie7 DNA MER1_type -2520 92 5 299 390 19 0 chr6 32825552 32825657 -156453897 + L2 LINE L2 3149 3255 -17 296 330 26 35 chr6 32825856 32825971 -156453583 - MIR3 SINE MIR -27 181 68 315 0 0 0 chr6 32826477 32826512 -156453042 + (TA)n Simple_repeat Simple_repeat 1 35 0 464 353 55 48 chr6 32826752 32827152 -156452402 - L1ME3A LINE L1 -300 5870 5468 282 289 13 13 chr6 32827161 32827310 -156452244 - L1ME3A LINE L1 -1088 5058 4910 5237 170 56 46 chr6 32827322 32829232 -156450322 + Charlie1 DNA MER1_type 1 2056 -705 1598 189 3 17 chr6 32829232 32829523 -156450031 - AluJo SINE Alu -23 289 3 5237 170 56 46 chr6 32829523 32829674 -156449880 + Charlie1 DNA MER1_type 2056 2204 -557 1691 160 35 0 chr6 32829973 32830260 -156449294 - AluJb SINE Alu -15 297 1 276 338 39 32 chr6 32830310 32830464 -156449090 + L2 LINE L2 2919 3073 -199 1045 160 142 50 chr6 32831193 32831474 -156448080 + MER44D DNA MER2_type 14 590 -19 1067 199 109 23 chr6 32831528 32831848 -156447706 - MSTD LTR MaLR 0 396 1 2659 105 55 36 chr6 32833043 32833519 -156446035 - L1MC2 LINE L1 -13 6331 5847 734 179 0 82 chr6 32833519 32833703 -156445851 + MER20 DNA MER1_type 51 219 0 * 997 240 103 65 chr6 32833703 32833900 -156445654 + Charlie2b DNA MER1_type 407 595 -2187 665 191 0 59 chr6 32833900 32834036 -156445518 - FLAM_A SINE Alu -1 132 5 997 240 103 65 chr6 32834036 32834252 -156445302 + Charlie2b DNA MER1_type 595 836 -1946 421 173 0 0 chr6 32834300 32834375 -156445179 - AluJ/FLAM SINE Alu -237 75 1 3679 212 95 45 chr6 32834375 32835660 -156443894 + Charlie2b DNA MER1_type 829 2047 -815 1635 157 132 0 chr6 32835660 32835979 -156443575 + MER46B DNA MER2_type 1 236 0 3679 212 95 45 chr6 32835979 32836034 -156443520 + Charlie2b DNA MER1_type 2047 2098 -764 1873 133 7 40 chr6 32836034 32836334 -156443220 - AluJb SINE Alu -22 290 1 3679 212 95 45 chr6 32836334 32836826 -156442728 + Charlie2b DNA MER1_type 2098 2759 -23 559 193 76 10 chr6 32838826 32839094 -156440460 - MER69 DNA AcHobo -1696 830 505 203 308 0 31 chr6 32840789 32840854 -156438700 + G-rich Low_complexity Low_complexity 3 65 0 2055 114 0 0 chr6 32841265 32841554 -156438000 - AluSx SINE Alu -18 294 6 453 198 0 41 chr6 32841748 32841869 -156437685 - MER112 DNA MER1_type -78 182 67 2578 127 18 34 chr6 32842932 32843156 -156436398 + Tigger2a DNA MER2_type 1 216 -2492 1815 151 24 0 chr6 32843156 32843447 -156436107 - AluJo SINE Alu -14 298 1 2578 127 18 34 chr6 32843447 32843663 -156435891 + Tigger2a DNA MER2_type 216 434 0 431 274 124 56 chr6 32843663 32844471 -156435083 + L1ME3 LINE L1 4411 5273 -873 894 306 37 16 chr6 32844472 32845061 -156434493 + L1ME3 LINE L1 5305 5905 -257 2014 157 3 0 chr6 32845592 32845898 -156433656 + AluJb SINE Alu 2 308 -4 1413 236 39 33 chr6 32845991 32846381 -156433173 - MSTD LTR MaLR 0 396 5 254 28 0 28 chr6 32846817 32846853 -156432701 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 457 57 14 14 chr6 32848733 32848803 -156430751 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 2433 65 0 3 chr6 32849250 32849543 -156430011 + AluY SINE Alu 1 292 -19 755 161 44 7 chr6 32849867 32850004 -156429550 + FLAM_C SINE Alu 2 143 0 947 195 0 0 chr6 32850020 32850200 -156429354 + AluJb SINE Alu 129 308 0 710 267 117 6 chr6 32850783 32851166 -156428388 - LTR16C LTR ERVL -4 487 37 2056 165 43 8 chr6 32851412 32851787 -156427767 - MLT1B LTR MaLR 0 390 3 228 240 13 40 chr6 32852043 32852118 -156427436 - Charlie2 DNA MER1_type -9 2853 2781 1402 160 24 86 chr6 32852119 32852456 -156427098 - L1MD1 LINE L1 -11 6231 5916 2145 123 10 0 chr6 32852484 32852792 -156426762 - AluSx SINE Alu -1 311 1 434 217 43 0 chr6 32852796 32852911 -156426643 - L1M4 LINE L1 -1031 5509 5390 522 167 0 0 chr6 32852911 32853001 -156426553 - AluJ/FRAM SINE Alu -3 309 220 3388 152 26 86 chr6 32853001 32853480 -156426074 - L1MD1 LINE L1 -336 5906 5400 2255 108 7 0 chr6 32853480 32853777 -156425777 - AluSp SINE Alu -14 299 1 3388 152 26 86 chr6 32853777 32854327 -156425227 - L1MD1 LINE L1 -842 5400 4932 1514 151 8 4 chr6 32854327 32854566 -156424988 - AluJo SINE Alu -15 297 58 1074 222 6 88 chr6 32854566 32854918 -156424636 - L1MDa LINE L1 -1145 5395 5073 2663 48 0 10 chr6 32856277 32856591 -156422963 + AluY SINE Alu 1 311 0 8307 202 71 59 chr6 32858515 32858845 -156420709 - L1MDa LINE L1 -1455 5085 4760 2610 49 20 0 chr6 32858845 32859150 -156420404 + AluY SINE Alu 1 311 0 8307 202 71 59 chr6 32859150 32860463 -156419091 - L1MDa LINE L1 -1780 4760 3464 5818 62 8 0 chr6 32860463 32861192 -156418362 + L1PA10 LINE L1 5417 6151 -17 8307 202 71 59 chr6 32861192 32861509 -156418045 - L1MDa LINE L1 -3076 3464 3152 2199 112 30 7 chr6 32861509 32861631 -156417923 + AluSq SINE Alu 1 119 -194 351 0 0 0 chr6 32861631 32861670 -156417884 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2199 112 30 7 chr6 32861670 32861842 -156417712 + AluSq SINE Alu 119 302 -11 2665 66 28 0 chr6 32861852 32862214 -156417340 + L1PA13 LINE L1 5792 6163 0 8307 202 71 59 chr6 32862214 32862718 -156416836 - L1MDa LINE L1 -3396 3144 2647 2164 96 10 36 chr6 32862718 32863021 -156416533 - AluSc SINE Alu -13 296 2 8307 202 71 59 chr6 32863021 32865189 -156414365 - L1MDa LINE L1 -3893 2647 379 1322 167 9 17 chr6 32865189 32865422 -156414132 - AluJo SINE Alu -40 272 42 568 206 46 0 chr6 32865427 32865558 -156413996 - Charlie2 DNA MER1_type -871 1991 1855 495 207 117 27 chr6 32867262 32867450 -156412104 + LTR37B LTR ERV1 199 403 -65 192 77 0 0 chr6 32867693 32867719 -156411835 + (A)n Simple_repeat Simple_repeat 1 26 0 565 267 67 33 chr6 32867837 32868017 -156411537 - LTR67 LTR ERVL -366 191 6 438 192 0 64 chr6 32868077 32868190 -156411364 + MLT1H1 LTR MaLR 437 555 0 531 232 30 24 chr6 32868190 32868358 -156411196 - L1ME3 LINE L1 -251 5911 5743 514 281 15 10 chr6 32868355 32868551 -156411003 - L1MC4 LINE L1 -144 7898 7702 * 278 161 177 16 chr6 32868557 32868619 -156410935 + MLT1F1 LTR MaLR 495 566 -1 253 296 60 55 chr6 32868699 32868898 -156410656 - HERV16 LTR ERVL -4422 574 375 2616 129 43 0 chr6 32869205 32869601 -156409953 + MLT2D LTR ERVL 2 414 0 1113 164 14 51 chr6 32870293 32870507 -156409047 - AluJo SINE Alu -16 296 91 287 293 93 46 chr6 32870569 32870828 -156408726 - L1M4 LINE L1 -2095 4051 3781 195 139 0 0 chr6 32870828 32870864 -156408690 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1664 135 0 39 chr6 32870869 32871128 -156408426 - AluJo SINE Alu -24 288 40 1034 284 39 46 chr6 32871128 32871916 -156407638 - L1M4 LINE L1 -2359 3787 3005 583 192 0 0 chr6 32871995 32872099 -156407455 - AluJb SINE Alu -19 293 190 1867 151 44 0 chr6 32872224 32872522 -156407032 - AluJb SINE Alu -1 311 1 431 240 97 77 chr6 32872763 32872959 -156406595 + MER63A DNA MER1_type 10 209 -1 2293 84 27 3 chr6 32873180 32873478 -156406076 - AluSq SINE Alu -8 305 1 443 280 58 78 chr6 32873497 32873943 -156405611 - L1ME LINE L1 -5583 487 51 200 261 77 0 chr6 32874143 32874208 -156405346 - MIR3 SINE MIR -12 196 127 270 292 133 9 chr6 32874419 32874532 -156405022 + MIR SINE MIR 48 174 -88 2014 135 3 7 chr6 32874550 32874847 -156404707 - AluJo SINE Alu 0 312 17 381 272 152 38 chr6 32875713 32875897 -156403657 + MER63A DNA MER1_type 2 206 -4 1803 162 0 53 chr6 32875912 32876233 -156403321 - AluJb SINE Alu -7 305 2 268 278 0 111 chr6 32876251 32876395 -156403159 - MER94 DNA DNA -4 130 3 267 177 32 0 chr6 32877389 32877451 -156402103 - MIR SINE MIR -79 183 120 2148 122 10 3 chr6 32877765 32878069 -156401485 - AluSx SINE Alu -6 306 1 293 192 192 8 chr6 32878859 32878979 -156400575 - MIR3 SINE MIR -4 204 63 465 241 154 25 chr6 32879621 32879783 -156399771 - MIR3 SINE MIR -24 184 2 321 82 0 0 chr6 32883014 32883063 -156396491 + (TC)n Simple_repeat Simple_repeat 1 49 0 441 219 48 70 chr6 32883197 32883384 -156396170 - MIR3 SINE MIR -5 203 21 231 114 0 0 chr6 32885181 32885216 -156394338 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2309 64 0 34 chr6 32885232 32885528 -156394026 - AluY SINE Alu -25 286 1 227 264 0 0 chr6 32887684 32887737 -156391817 + (TG)n Simple_repeat Simple_repeat 1 53 0 1959 162 10 0 chr6 32888142 32888450 -156391104 - AluJb SINE Alu -1 311 1 914 126 0 0 chr6 32888521 32888648 -156390906 - FLAM_C SINE Alu -16 127 1 506 288 34 39 chr6 32888684 32888889 -156390665 - MIR SINE MIR -56 206 3 272 285 109 0 chr6 32891470 32891618 -156387936 + MIR SINE MIR 44 205 -57 1695 100 0 0 chr6 32893530 32893750 -156385804 + AluSg/x SINE Alu 81 300 -12 2415 68 0 3 chr6 32895567 32895862 -156383692 - AluSq SINE Alu -19 294 1 180 0 0 0 chr6 32896503 32896523 -156383031 + (T)n Simple_repeat Simple_repeat 1 20 0 332 164 0 60 chr6 32898003 32898070 -156381484 + MER96 DNA MER1_type? 2 64 -111 2174 145 31 0 chr6 32898191 32898515 -156381039 + MER7A DNA MER2_type 1 332 -14 301 170 19 0 chr6 32899962 32900015 -156379539 - L1M3 LINE L1 -376 5795 5742 5161 166 40 20 chr6 32900309 32900909 -156378645 - L1MB3 LINE L1 0 6183 5596 2285 130 75 20 chr6 32900909 32901254 -156378300 - THE1B LTR MaLR 0 364 1 5161 166 40 20 chr6 32901254 32901838 -156377716 - L1MB3 LINE L1 -587 5596 4986 1358 202 27 60 chr6 32902785 32903231 -156376323 - L1MC5 LINE L1 -48 7913 7483 180 77 0 0 chr6 32903231 32903257 -156376297 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 1584 217 50 39 chr6 32903281 32903738 -156375816 - L1MC5 LINE L1 -488 7473 7012 300 360 64 23 chr6 32903777 32903949 -156375605 - L2 LINE L2 -15 3257 3079 198 0 0 0 chr6 32906290 32906312 -156373242 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 437 237 53 8 chr6 32906428 32906559 -156372995 - L1ME4a LINE L1 -23 6098 5962 872 243 74 8 chr6 32906717 32906960 -156372594 - MIR SINE MIR -2 260 2 231 308 94 97 chr6 32907248 32907661 -156371893 + L2 LINE L2 2861 3272 0 193 220 294 28 chr6 32908188 32908297 -156371257 - MIR3 SINE MIR -10 198 61 449 299 43 27 chr6 32909004 32909191 -156370363 - MIR SINE MIR -7 255 66 327 222 12 0 chr6 32909193 32909274 -156370280 + L2 LINE L2 1756 1837 -1477 247 260 40 30 chr6 32909277 32909377 -156370177 - L1MC4a LINE L1 -1633 6175 6075 22 0 0 0 chr6 32909532 32909554 -156370000 + AT_rich Low_complexity Low_complexity 1 22 0 858 283 65 40 chr6 32909554 32909953 -156369601 - L1ME4a LINE L1 -1996 5812 5404 24 67 0 0 chr6 32910326 32910371 -156369183 + AT_rich Low_complexity Low_complexity 1 45 0 276 309 104 30 chr6 32910457 32910891 -156368663 + L1M4 LINE L1 2135 2600 -3546 216 0 0 0 chr6 32911535 32911559 -156367995 + (A)n Simple_repeat Simple_repeat 1 24 0 2276 116 0 0 chr6 32911765 32912067 -156367487 + AluSx SINE Alu 1 302 -10 1831 139 33 0 chr6 32912154 32912452 -156367102 + AluJo SINE Alu 1 307 0 349 273 75 0 chr6 32912485 32912646 -156366908 + L1P LINE L1 3634 3806 -2340 337 212 162 10 chr6 32914064 32914163 -156365391 + MIR SINE MIR 72 185 -77 633 173 32 0 chr6 32915704 32915833 -156363721 - MLT1A1 LTR MaLR 0 457 236 204 40 0 0 chr6 32916181 32916206 -156363348 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1386 207 4 22 chr6 32916206 32916481 -156363073 - AluJo SINE Alu -32 280 11 776 173 73 0 chr6 32916490 32916640 -156362914 - MLT1A1 LTR MaLR -204 161 1 1819 139 24 0 chr6 32916760 32917054 -156362500 - L1MA6 LINE L1 -224 6076 5776 729 109 0 0 chr6 32917054 32917153 -156362401 + L1MA6 LINE L1 6195 6295 -5 625 151 63 32 chr6 32918389 32918515 -156361039 - LTR42 LTR ERVL -340 155 26 208 328 17 0 chr6 32919159 32919217 -156360337 + L2 LINE L2 3001 3059 -213 233 289 107 44 chr6 32922189 32922348 -156357206 - L1ME3A LINE L1 -37 6133 5965 2490 194 47 112 chr6 32922418 32923328 -156356226 - L1MC5 LINE L1 -436 7525 6678 3144 137 35 12 chr6 32923328 32923810 -156355744 - LTR42 LTR ERVL 0 495 3 2490 194 47 112 chr6 32923810 32923853 -156355701 - L1MC5 LINE L1 -1283 6678 6634 2298 91 0 0 chr6 32923894 32924180 -156355374 + AluSc SINE Alu 3 288 -21 5495 199 60 24 chr6 32924571 32925923 -156353631 + Charlie1a DNA MER1_type 3 1439 -16 1694 193 46 9 chr6 32926001 32926348 -156353206 - MLT1A1 LTR MaLR 0 365 6 230 303 133 28 chr6 32926369 32926580 -156352974 - L1M4c LINE L1 -4740 1644 1412 18358 191 30 14 chr6 32926587 32930656 -156348898 + L1PA13 LINE L1 1 4190 -2607 279 0 0 0 chr6 32930656 32930687 -156348867 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 18358 191 30 14 chr6 32930687 32931836 -156347718 + L1PA13 LINE L1 4190 5319 -1478 2434 174 71 6 chr6 32931825 32932665 -156346889 + L1MD1 LINE L1 5350 6239 -3 * 472 222 96 7 chr6 32932761 32932896 -156346658 - L1M4 LINE L1 -1008 5138 4992 * 1146 202 54 4 chr6 32932890 32933148 -156346406 - L1M4 LINE L1 -1946 4200 3930 2299 103 0 3 chr6 32934208 32934509 -156345045 + AluY SINE Alu 12 311 0 35 54 0 0 chr6 32934528 32934584 -156344970 + AT_rich Low_complexity Low_complexity 1 56 0 1042 218 159 37 chr6 32934616 32934942 -156344612 + Tigger5 DNA MER2_type 1 2323 0 366 366 0 7 chr6 32935022 32935164 -156344390 - MIR SINE MIR -114 148 8 2185 184 62 44 chr6 32935178 32935287 -156344267 - MLT1D LTR MaLR 0 505 399 1177 264 101 10 chr6 32935287 32935685 -156343869 + MER57B LTR ERV1 1 434 0 2185 184 62 44 chr6 32935685 32936071 -156343483 - MLT1D LTR MaLR -106 399 1 346 347 66 26 chr6 32936192 32936570 -156342984 + L2 LINE L2 2459 2851 -463 210 286 200 0 chr6 32938037 32938142 -156341412 + MIR SINE MIR 11 136 -126 691 167 42 22 chr6 32938143 32938358 -156341196 - AluJb SINE Alu -18 294 4 192 238 0 0 chr6 32938368 32938410 -156341144 + MIR SINE MIR 205 246 -16 27 0 0 0 chr6 32938410 32938437 -156341117 + AT_rich Low_complexity Low_complexity 1 27 0 1539 100 132 24 chr6 32938569 32938862 -156340692 + AluSx SINE Alu 6 325 0 248 226 98 98 chr6 32939023 32939187 -156340367 - L1MCc LINE L1 -5997 426 263 258 300 50 17 chr6 32939266 32939386 -156340168 - L1MCc LINE L1 -6283 140 17 4022 182 72 25 chr6 32941604 32942379 -156337175 + MER21B LTR ERV1 1 812 -51 628 176 0 73 chr6 32942449 32942585 -156336969 + FLAM_C SINE Alu 12 137 -6 1721 155 24 17 chr6 32943696 32943987 -156335567 - AluJo SINE Alu -19 293 1 381 284 115 0 chr6 32944281 32944429 -156335125 + L2 LINE L2 2825 2989 -324 289 309 41 16 chr6 32944452 32944575 -156334979 + L2 LINE L2 3179 3304 -9 352 235 107 7 chr6 32945437 32945586 -156333968 + MIR SINE MIR 74 237 -25 39 38 0 38 chr6 32945617 32945662 -156333892 + AT_rich Low_complexity Low_complexity 1 43 -33 6335 72 16 5 chr6 32945662 32947447 -156332107 - L1PA11 LINE L1 -5 6169 4368 39 38 0 38 chr6 32947447 32947480 -156332074 + AT_rich Low_complexity Low_complexity 43 76 0 194 330 70 35 chr6 32947850 32947965 -156331589 - MIR SINE MIR -60 202 84 1207 44 0 0 chr6 32948332 32948468 -156331086 - AluSq/x SINE Alu -177 136 1 225 220 9 73 chr6 32949624 32949733 -156329821 + L1MCa LINE L1 1400 1501 -4925 238 223 176 7 chr6 32949841 32949989 -156329565 + L1M4 LINE L1 5227 5399 -747 405 245 87 72 chr6 32950355 32950563 -156328991 - L2 LINE L2 0 3313 3103 379 256 37 30 chr6 32951539 32951703 -156327851 + L1MCa LINE L1 2428 2592 -3834 4111 194 35 17 chr6 32951763 32952587 -156326967 - L1P LINE L1 -3848 2298 1460 4524 97 10 0 chr6 32952587 32953188 -156326366 + L1PA13 LINE L1 5557 6163 0 2707 39 0 0 chr6 32953191 32953500 -156326054 + AluY SINE Alu 1 309 -2 882 125 0 0 chr6 32953589 32953709 -156325845 - MSTB LTR MaLR -299 127 8 692 225 19 43 chr6 32953719 32953928 -156325626 + L1MDa LINE L1 2190 2393 -4147 1351 206 152 51 chr6 32954454 32954843 -156324711 + MSTC LTR MaLR 1 428 0 5522 237 97 51 chr6 32954845 32955920 -156323634 + MSTC-int LTR MaLR 2 1182 -553 8463 51 1 0 chr6 32955920 32956888 -156322666 + LTR5 LTR ERVK 1 969 0 5522 237 97 51 chr6 32956888 32957469 -156322085 + MSTC-int LTR MaLR 1182 1735 0 1534 219 98 23 chr6 32957469 32957867 -156321687 + MSTC LTR MaLR 1 428 0 2092 97 0 8 chr6 32957893 32958160 -156321394 + AluSx SINE Alu 26 290 -22 404 250 75 8 chr6 32958625 32958745 -156320809 + MLT1E3-int LTR MaLR 1603 1730 -5 1978 222 69 49 chr6 32958761 32958856 -156320698 + MLT1E3 LTR MaLR 4 96 -528 3418 109 45 52 chr6 32958856 32959371 -156320183 - MER9 LTR ERVK 0 511 1 1978 222 69 49 chr6 32959371 32959884 -156319670 + MLT1E3 LTR MaLR 96 624 0 27 49 0 0 chr6 32960062 32960103 -156319451 + AT_rich Low_complexity Low_complexity 1 41 0 2007 124 10 3 chr6 32960103 32960402 -156319152 - LTR43 LTR ERV1 0 602 302 1748 125 30 106 chr6 32961100 32961467 -156318087 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr6 32962015 32962036 -156317518 + AT_rich Low_complexity Low_complexity 1 21 0 344 315 31 31 chr6 32962719 32962881 -156316673 - MLT1J2 LTR MaLR 0 450 289 263 320 77 34 chr6 32963015 32963249 -156316305 - ERVL LTR ERVL -384 5380 5137 1580 167 106 73 chr6 32963494 32963785 -156315769 + MER4A LTR ERV1 1 183 -282 2286 105 0 22 chr6 32963785 32964100 -156315454 - AluSx SINE Alu -4 308 1 1580 167 106 73 chr6 32964100 32964372 -156315182 + MER4A LTR ERV1 183 444 -21 1638 168 9 87 chr6 32964520 32964854 -156314700 + MER70B LTR ERVL 271 578 0 745 269 40 4 chr6 32964856 32965109 -156314445 + L1MCa LINE L1 932 1193 -5233 1315 205 51 18 chr6 32965126 32965430 -156314124 + AluJo SINE Alu 2 314 0 308 250 11 23 chr6 32965455 32965543 -156314011 - L1MCa LINE L1 -5202 1224 1138 745 169 58 35 chr6 32965592 32965764 -156313790 - L1MD2 LINE L1 -1 6358 6183 * 1631 198 14 9 chr6 32965722 32966070 -156313484 + L1M4 LINE L1 4817 5166 -980 1667 138 0 46 chr6 32966070 32966352 -156313202 + L1PB3 LINE L1 5882 6150 -4 22 0 0 0 chr6 32966352 32966374 -156313180 + AT_rich Low_complexity Low_complexity 1 22 0 436 292 58 7 chr6 32966374 32966511 -156313043 - MIR SINE MIR -15 247 104 234 186 0 0 chr6 32966540 32966583 -156312971 - L2 LINE L2 -661 2653 2611 941 199 68 38 chr6 32966656 32966971 -156312583 + MER4C LTR ERV1 276 465 0 2342 164 17 0 chr6 32966972 32967374 -156312180 - L1MA7 LINE L1 -459 5832 5424 1944 134 3 40 chr6 32968959 32969280 -156310274 - AluSq SINE Alu -4 309 1 1805 185 3 10 chr6 32969352 32969666 -156309888 + AluJo SINE Alu 1 312 0 1979 231 118 4 chr6 32970365 32970867 -156308687 + Zaphod DNA AcHobo 89 647 -3384 203 360 11 11 chr6 32970867 32970956 -156308598 - MIR SINE MIR -62 146 58 197 321 75 25 chr6 32972174 32972333 -156307221 - MIR SINE MIR -6 256 90 239 324 108 0 chr6 32973874 32973976 -156305578 + L2 LINE L2 3201 3313 0 215 316 25 13 chr6 32975570 32975649 -156303905 + L2 LINE L2 3175 3254 -59 597 113 0 0 chr6 32976299 32976379 -156303175 - MSTB LTR MaLR 0 426 347 1906 185 72 5 chr6 32976379 32976769 -156302785 - MSTA LTR MaLR -12 416 1 1427 116 10 0 chr6 32977713 32977911 -156301643 + AluSg/x SINE Alu 98 297 -15 1869 209 75 64 chr6 33078824 33079282 -156200272 + MLT1E3 LTR MaLR 87 553 -71 1370 207 37 34 chr6 33079282 33079577 -156199977 + AluJo SINE Alu 1 296 -16 1869 209 75 64 chr6 33079577 33079650 -156199904 + MLT1E3 LTR MaLR 553 624 0 206 204 0 0 chr6 33079773 33079822 -156199732 - L2 LINE L2 0 3313 3265 203 269 39 0 chr6 33079870 33079922 -156199632 - L2 LINE L2 -553 2761 2708 233 151 0 38 chr6 33082085 33082138 -156197416 + G-rich Low_complexity Low_complexity 3 53 0 3755 182 64 45 chr6 33084935 33085871 -156193683 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 33086337 33086362 -156193192 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 217 304 11 43 chr6 33086406 33086498 -156193056 + L3 LINE CR1 934 1022 -555 418 128 0 1 chr6 33086628 33086712 -156192842 - MER30 DNA MER1_type 0 230 140 370 287 89 19 chr6 33087122 33087279 -156192275 + ERVL LTR ERVL 1989 2156 -3608 330 143 0 0 chr6 33087744 33087793 -156191761 + MLT1F LTR MaLR 491 539 -3 2487 87 3 0 chr6 33087903 33088274 -156191280 - AluY SINE Alu 0 372 1 231 252 19 9 chr6 33088346 33088453 -156191101 + CT-rich Low_complexity Low_complexity 3 110 0 406 303 129 16 chr6 33088692 33089002 -156190552 + L1ME3A LINE L1 5528 5872 -298 287 104 21 0 chr6 33089086 33089134 -156190420 + (TA)n Simple_repeat Simple_repeat 1 49 0 3486 118 24 4 chr6 33089200 33089700 -156189854 - MER9 LTR ERVK 0 511 2 6412 84 16 10 chr6 33090530 33091529 -156188025 + L1PA10 LINE L1 5164 6163 -5 2109 222 44 28 chr6 33091617 33091716 -156187838 + MLT1F1 LTR MaLR 6 102 -465 2205 152 5 24 chr6 33091716 33092098 -156187456 + THE1C LTR MaLR 1 375 0 2109 222 44 28 chr6 33092098 33092543 -156187011 + MLT1F1 LTR MaLR 102 559 -8 1430 218 25 0 chr6 33092620 33092900 -156186654 - AluJo SINE Alu -25 287 1 1841 224 96 46 chr6 33093063 33093349 -156186205 + MLT1E3 LTR MaLR 3 273 -351 2233 91 16 10 chr6 33093349 33093657 -156185897 + AluY SINE Alu 1 310 -1 1841 224 96 46 chr6 33093657 33093914 -156185640 + MLT1E3 LTR MaLR 273 573 -51 207 250 39 0 chr6 33094146 33094198 -156185356 - L2 LINE L2 -553 2761 2708 208 254 30 0 chr6 33094309 33094376 -156185178 + GA-rich Low_complexity Low_complexity 1 69 0 408 108 0 60 chr6 33095339 33095407 -156184147 + AluSc SINE Alu 232 296 -13 2230 112 0 6 chr6 33095407 33095719 -156183835 + AluY SINE Alu 1 310 -1 408 108 0 60 chr6 33095719 33095733 -156183821 + AluSc SINE Alu 296 309 0 1603 278 44 19 chr6 33096641 33097232 -156182322 - L1MC4a LINE L1 -1870 5938 5333 418 301 107 31 chr6 33097286 33097971 -156181583 - L1MC4a LINE L1 -798 5348 4612 2247 101 7 0 chr6 33097975 33098271 -156181283 + AluSq SINE Alu 1 298 -15 544 268 125 51 chr6 33098578 33098914 -156180640 - MLT1J1 LTR MaLR -26 420 60 333 157 57 0 chr6 33099888 33099958 -156179596 - MLT1D LTR MaLR -1 504 431 35 24 0 0 chr6 33099958 33100000 -156179554 + AT_rich Low_complexity Low_complexity 1 42 0 2154 201 26 44 chr6 33100000 33100458 -156179096 - MLT1D LTR MaLR -55 450 1 1659 230 9 15 chr6 33100629 33101040 -156178514 + L1ME1 LINE L1 5723 6276 -36 3266 118 0 2 chr6 33101040 33101498 -156178056 + L1PA15 LINE L1 5709 6165 0 272 122 20 0 chr6 33101735 33101784 -156177770 + L1MA10 LINE L1 6278 6327 -7 405 260 39 0 chr6 33101840 33101944 -156177610 + L2 LINE L2 3187 3294 -19 1229 246 77 30 chr6 33101955 33102460 -156177094 + MLT1E2 LTR MaLR 1 436 -69 519 260 121 55 chr6 33102812 33103085 -156176469 + LTR43 LTR ERV1 187 477 -125 520 153 29 18 chr6 33103133 33103251 -156176303 + MLT1E2 LTR MaLR 431 626 0 2987 138 74 25 chr6 33103455 33103604 -156175950 + MER41C LTR ERV1 1 141 -413 1922 131 14 0 chr6 33103604 33103894 -156175660 + AluSg SINE Alu 1 294 -16 2987 138 74 25 chr6 33103894 33104078 -156175476 + MER41C LTR ERV1 141 314 -240 227 53 0 26 chr6 33104078 33104116 -156175438 + (TA)n Simple_repeat Simple_repeat 2 38 0 2987 138 74 25 chr6 33104116 33104309 -156175245 + MER41C LTR ERV1 314 554 0 481 211 11 0 chr6 33104411 33104501 -156175053 - MER81 DNA DNA 0 114 24 210 348 89 0 chr6 33104719 33104831 -156174723 - MER5A DNA MER1_type 0 189 68 1730 241 77 65 chr6 33104887 33105722 -156173832 + L2 LINE L2 2305 3153 -160 2118 97 0 7 chr6 33105722 33106012 -156173542 - AluSc SINE Alu -19 290 3 1730 241 77 65 chr6 33106012 33106175 -156173379 + L2 LINE L2 3153 3313 0 1232 278 43 63 chr6 33106189 33106355 -156173199 + L1ME3 LINE L1 4860 5028 -1134 1952 172 22 11 chr6 33106355 33106716 -156172838 - MLT1A1 LTR MaLR 0 365 1 1232 278 43 63 chr6 33106716 33106989 -156172565 + L1ME3 LINE L1 5028 5305 -857 2870 138 22 16 chr6 33106989 33107483 -156172071 + LOR1a LTR ERV1 1 497 0 1232 278 43 63 chr6 33107483 33108148 -156171406 + L1ME3 LINE L1 5305 5950 -212 186 43 0 0 chr6 33108212 33108235 -156171319 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 5159 97 31 28 chr6 33108243 33109433 -156170121 + SVA Other Other 60 1369 -17 230 0 33 0 chr6 33109440 33109470 -156170084 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1013 158 64 161 chr6 33109485 33109632 -156169922 + AluJo SINE Alu 1 100 -202 2234 102 0 10 chr6 33109632 33109946 -156169608 + AluSq SINE Alu 1 311 -2 1013 158 64 161 chr6 33109946 33110127 -156169427 + AluJo SINE Alu 100 297 -5 2234 82 3 3 chr6 33110127 33110431 -156169123 + AluY SINE Alu 1 304 -7 492 210 57 150 chr6 33110646 33110769 -156168785 - L2 LINE L2 -1483 1831 1698 2012 84 12 59 chr6 33110769 33111091 -156168463 + AluSq SINE Alu 1 307 -6 492 210 57 150 chr6 33111091 33111267 -156168287 - L2 LINE L2 -1616 1698 1560 1102 216 259 5 chr6 33111312 33111682 -156167872 - LTR41 LTR ERVL -309 464 1 280 321 82 15 chr6 33111690 33111824 -156167730 + L1MC4 LINE L1 7332 7474 -568 2101 103 7 3 chr6 33111833 33112133 -156167421 + AluSx SINE Alu 1 301 -11 426 220 75 38 chr6 33112346 33112532 -156167022 + L1MC5 LINE L1 7354 7546 -415 304 285 197 18 chr6 33112532 33112872 -156166682 - LTR37B LTR ERV1 0 468 68 1975 132 10 0 chr6 33112873 33113168 -156166386 + AluJo SINE Alu 1 298 -14 239 0 32 0 chr6 33113653 33113684 -156165870 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1316 209 177 62 chr6 33113769 33114320 -156165234 - MER39 LTR ERV1 -2 705 6 487 253 109 6 chr6 33114483 33114653 -156164901 - MIR SINE MIR -41 221 30 914 44 0 11 chr6 33114959 33115139 -156164415 + L1PA4 LINE L1 5929 6152 -3 264 310 110 33 chr6 33115224 33115638 -156163916 - L2 LINE L2 -81 3232 2713 2491 46 0 0 chr6 33115719 33116021 -156163533 - AluSc SINE Alu -6 303 2 201 176 0 0 chr6 33117975 33118009 -156161545 + T-rich Low_complexity Low_complexity 1 34 0 3067 124 154 109 chr6 33118368 33118927 -156160627 - L1MC3 LINE L1 -7 7778 7083 309 264 23 11 chr6 33118927 33119014 -156160540 - MLT1F1 LTR MaLR -445 122 35 3067 124 154 109 chr6 33119014 33119229 -156160325 - L1MC3 LINE L1 -702 7083 6879 297 257 239 0 chr6 33119820 33119929 -156159625 - L2 LINE L2 -2 3270 3136 888 201 7 0 chr6 33119950 33120104 -156159450 + Tigger7 DNA MER2_type 10 164 -569 958 133 122 89 chr6 33120110 33120380 -156159174 + Tigger7 DNA MER2_type 2309 2587 0 2301 68 0 3 chr6 33120707 33121003 -156158551 - AluSc SINE Alu -14 295 1 761 185 0 0 chr6 33121048 33121210 -156158344 - FLAM_C SINE Alu 0 162 1 601 135 0 0 chr6 33121328 33121417 -156158137 - MSTD LTR MaLR 0 396 308 799 196 7 7 chr6 33121424 33121572 -156157982 - MSTD LTR MaLR -248 148 1 375 246 123 0 chr6 33121586 33121708 -156157846 - MER104 DNA Tc2 -38 142 6 441 0 0 0 chr6 33121976 33122025 -156157529 + (CA)n Simple_repeat Simple_repeat 2 50 0 389 297 34 2 chr6 33122036 33122202 -156157352 + L1ME3A LINE L1 5450 5620 -544 468 201 189 12 chr6 33122211 33122375 -156157179 + L1ME3A LINE L1 5683 5875 -295 192 77 0 0 chr6 33122398 33122424 -156157130 + (A)n Simple_repeat Simple_repeat 1 26 0 182 291 0 36 chr6 33122741 33122796 -156156758 - L2 LINE L2 -3 3269 3217 558 294 91 75 chr6 33122820 33123258 -156156296 - L2 LINE L2 -20 3252 2808 411 234 126 0 chr6 33123554 33123665 -156155889 + L2 LINE L2 3189 3313 0 276 293 160 9 chr6 33123676 33123888 -156155666 + L2 LINE L2 2726 2969 -345 256 301 28 56 chr6 33123953 33124096 -156155458 + MIR3 SINE MIR 10 148 -60 411 298 83 36 chr6 33124100 33124268 -156155286 - MER5B DNA MER1_type -1 177 2 1384 180 11 26 chr6 33125108 33125375 -156154179 - AluJb SINE Alu -49 263 1 2194 94 3 3 chr6 33125664 33125971 -156153583 - AluSp SINE Alu -6 307 1 225 218 8 129 chr6 33126023 33126147 -156153407 + MIR3 SINE MIR 83 191 -17 345 216 74 117 chr6 33126639 33126801 -156152753 + MIR3 SINE MIR 5 159 -49 243 283 0 0 chr6 33126893 33126946 -156152608 - L2 LINE L2 0 3313 3261 430 152 76 0 chr6 33127060 33127139 -156152415 + AluS SINE Alu 220 304 -8 563 214 82 125 chr6 33127139 33127213 -156152341 - L1MC4 LINE L1 -154 7888 7812 2149 84 3 3 chr6 33127213 33127528 -156152026 + AluSq SINE Alu 1 315 0 563 214 82 125 chr6 33127528 33127590 -156151964 - L1MC4 LINE L1 -230 7812 7749 1575 180 17 3 chr6 33127590 33127885 -156151669 + AluJb SINE Alu 6 304 -8 563 214 82 125 chr6 33127885 33128161 -156151393 - L1MC4 LINE L1 -293 7749 7492 688 264 96 29 chr6 33128211 33128601 -156150953 - L1MC5 LINE L1 -544 7498 7127 189 321 38 0 chr6 33129003 33129056 -156150498 + MIR3 SINE MIR 114 168 -40 2131 105 0 16 chr6 33129059 33129364 -156150190 - AluSc SINE Alu -9 300 1 425 300 50 6 chr6 33130061 33130221 -156149333 - MIR SINE MIR -29 233 67 1393 189 3 48 chr6 33130613 33130926 -156148628 - AluJb SINE Alu -1 311 13 2457 69 0 0 chr6 33130992 33131298 -156148256 + AluY SINE Alu 1 306 -5 301 328 8 42 chr6 33131319 33131438 -156148116 + MER91B DNA MER1_type 1 115 -75 212 272 235 0 chr6 33131465 33131546 -156148008 + MER91B DNA MER1_type 91 190 0 395 198 58 12 chr6 33131566 33131652 -156147902 + MIR3 SINE MIR 108 197 -11 209 285 236 8 chr6 33132618 33132741 -156146813 + MIR3 SINE MIR 29 179 -29 1801 161 56 15 chr6 33133022 33133346 -156146208 - MER2 DNA MER2_type -8 337 1 186 194 0 0 chr6 33133797 33133828 -156145726 - L2 LINE L2 -217 3055 3025 284 219 179 3 chr6 33134426 33134536 -156145018 + MIR SINE MIR 30 153 -62 413 294 119 17 chr6 33135367 33135544 -156144010 - MIR3 SINE MIR -13 195 1 201 191 95 0 chr6 33135749 33135791 -156143763 + MER91A DNA MER1_type 124 169 -27 816 103 0 0 chr6 33136011 33136128 -156143426 - AluSg/x SINE Alu -11 299 183 1631 103 5 0 chr6 33136128 33136352 -156143202 - AluSx SINE Alu -87 225 1 1733 149 10 5 chr6 33136353 33136929 -156142625 - L1MA5 LINE L1 -47 6253 5553 * 3098 149 12 62 chr6 33136924 33137446 -156142108 + L1 LINE L1 4224 4619 -1527 2269 94 7 0 chr6 33137446 33137745 -156141809 + AluSg SINE Alu 1 301 -9 3098 149 12 62 chr6 33137745 33138062 -156141492 + L1 LINE L1 4619 4950 -1196 811 170 0 0 chr6 33138240 33138375 -156141179 + FLAM_C SINE Alu 6 140 -3 538 258 102 67 chr6 33139298 33139581 -156139973 + L2 LINE L2 3020 3312 -1 467 311 37 21 chr6 33139760 33139950 -156139604 + L2 LINE L2 2502 2694 -620 1207 282 49 27 chr6 33139981 33140432 -156139122 - MLT1J LTR MaLR -50 461 1 307 333 64 13 chr6 33140448 33140604 -156138950 + L2 LINE L2 2718 2881 -433 347 252 25 76 chr6 33140698 33140817 -156138737 + L2 LINE L2 3163 3275 -38 358 148 102 45 chr6 33142147 33142235 -156137319 + MER91C DNA MER1_type 14 106 -34 2563 29 7 3 chr6 33142671 33142980 -156136574 - AluY SINE Alu -1 310 1 2316 83 3 0 chr6 33142980 33143280 -156136274 - AluY SINE Alu -10 301 1 315 164 0 0 chr6 33144562 33144623 -156134931 + GA-rich Low_complexity Low_complexity 2 62 0 204 125 0 0 chr6 33144685 33144717 -156134837 + (GGA)n Simple_repeat Simple_repeat 2 33 0 464 234 39 23 chr6 33146335 33146463 -156133091 + L2 LINE L2 3179 3308 -5 2484 55 0 3 chr6 33146902 33147212 -156132342 - AluY SINE Alu -1 310 2 239 171 0 0 chr6 33147512 33147547 -156132007 - Alu SINE Alu -265 36 2 778 209 19 6 chr6 33147551 33147709 -156131845 - FRAM SINE Alu -6 160 1 383 348 185 6 chr6 33147795 33148114 -156131440 - L2 LINE L2 -19 3294 2919 1864 137 0 10 chr6 33148176 33148468 -156131086 - AluSx SINE Alu -9 303 15 188 268 0 0 chr6 33148490 33148531 -156131023 + L2 LINE L2 3237 3277 -36 192 77 0 0 chr6 33148561 33148587 -156130967 + (CTG)n Simple_repeat Simple_repeat 3 28 0 230 362 26 9 chr6 33148650 33148766 -156130788 + L1M2 LINE L1 667 784 -6065 11249 195 48 31 chr6 33148874 33150043 -156129511 + L1M2 LINE L1 624 1771 -5077 2506 64 0 0 chr6 33150043 33150354 -156129200 + AluY SINE Alu 1 311 0 11249 195 48 31 chr6 33150354 33152205 -156127349 + L1M2 LINE L1 1771 3588 -3260 2147 111 0 7 chr6 33152205 33152512 -156127042 + AluSq SINE Alu 1 305 -8 11249 195 48 31 chr6 33152512 33154237 -156125317 + L1M2 LINE L1 3588 5409 -1439 5444 101 2 23 chr6 33154316 33155110 -156124444 + L1PA11 LINE L1 5397 6174 0 307 284 53 64 chr6 33156129 33156323 -156123231 + MIR SINE MIR 32 221 -41 267 31 0 0 chr6 33156603 33156635 -156122919 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1617 126 119 0 chr6 33156900 33157177 -156122377 - AluSx SINE Alu -2 310 1 2000 138 0 0 chr6 33157179 33157477 -156122077 - AluSx SINE Alu -9 303 6 579 205 180 31 chr6 33159237 33159398 -156120156 + MER5A DNA MER1_type 4 188 -1 944 236 41 24 chr6 33159590 33159836 -156119718 - MIR SINE MIR -11 251 2 329 202 186 47 chr6 33160831 33160960 -156118594 + MIR3 SINE MIR 48 194 -14 569 304 149 5 chr6 33161992 33162193 -156117361 - MIR SINE MIR -1 261 32 327 285 133 53 chr6 33163281 33163432 -156116122 + MIR3 SINE MIR 3 165 -43 251 310 107 83 chr6 33163767 33164057 -156115497 - L2 LINE L2 -8 3264 2968 7264 56 5 0 chr6 33164077 33165793 -156113761 + L1PA7 LINE L1 4435 6154 0 460 323 103 36 chr6 33165850 33166345 -156113209 - L2 LINE L2 -337 2977 2450 225 65 0 0 chr6 33167327 33167358 -156112196 + (GA)n Simple_repeat Simple_repeat 1 31 0 351 0 0 0 chr6 33167921 33167960 -156111594 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 357 288 76 33 chr6 33168070 33168254 -156111300 - MIR SINE MIR -51 211 20 1315 161 17 116 chr6 33168464 33168589 -156110965 + MER33 DNA MER1_type 7 143 -2442 2408 62 0 3 chr6 33168589 33168898 -156110656 - AluY SINE Alu -3 308 1 1315 161 17 116 chr6 33168898 33169125 -156110429 + MER33 DNA MER1_type 143 324 0 399 300 64 0 chr6 33169171 33169311 -156110243 + MIR SINE MIR 73 221 -41 221 280 0 0 chr6 33170655 33170705 -156108849 + L2 LINE L2 3264 3313 0 202 323 11 0 chr6 33170785 33170878 -156108676 + (TG)n Simple_repeat Simple_repeat 2 95 0 538 299 117 5 chr6 33171823 33172020 -156107534 + MIR SINE MIR 28 246 -16 193 282 26 64 chr6 33172683 33172761 -156106793 + MIR SINE MIR 110 184 -78 266 299 197 7 chr6 33172959 33173106 -156106448 + MIR3 SINE MIR 30 204 -4 1182 156 0 50 chr6 33173178 33173416 -156106138 + AluJo SINE Alu 87 312 0 288 292 83 47 chr6 33173974 33174149 -156105405 + MIR SINE MIR 23 206 -56 317 304 134 0 chr6 33174746 33174858 -156104696 - L2 LINE L2 -1 3271 3145 * 591 161 201 20 chr6 33174851 33175000 -156104554 + MER5A DNA MER1_type 14 189 0 228 186 29 14 chr6 33175284 33175354 -156104200 + (TA)n Simple_repeat Simple_repeat 1 71 0 194 233 83 50 chr6 33176171 33176231 -156103323 - MER5A DNA MER1_type -6 183 122 207 214 24 0 chr6 33176234 33176276 -156103278 - MER5A DNA MER1_type -121 68 26 501 269 31 31 chr6 33177180 33177310 -156102244 + MIR3 SINE MIR 2 131 -77 247 313 84 99 chr6 33177336 33177668 -156101886 - L2 LINE L2 -3 3269 2943 22 80 0 0 chr6 33178829 33178879 -156100675 + AT_rich Low_complexity Low_complexity 1 50 0 866 284 72 0 chr6 33179450 33179686 -156099868 - MIR SINE MIR -1 261 9 236 322 154 28 chr6 33180477 33180691 -156098863 + L2 LINE L2 2851 3091 -181 22 0 0 0 chr6 33180807 33180829 -156098725 + AT_rich Low_complexity Low_complexity 1 22 0 2786 44 0 6 chr6 33180881 33181221 -156098333 + L1PA5 LINE L1 5812 6149 -5 646 315 81 8 chr6 33181259 33181494 -156098060 - MIR SINE MIR -1 261 10 292 247 155 10 chr6 33181660 33181757 -156097797 - L2 LINE L2 0 3272 3162 1517 214 75 38 chr6 33181792 33181854 -156097700 - MLT1E LTR MaLR 0 593 535 2120 113 0 7 chr6 33181854 33182164 -156097390 + AluSx SINE Alu 1 308 -4 1517 214 75 38 chr6 33182164 33182622 -156096932 - MLT1E LTR MaLR -58 535 1 2189 60 3 3 chr6 33184179 33184485 -156095069 + AluY SINE Alu 1 306 0 185 287 143 43 chr6 33186654 33186884 -156092670 + L2 LINE L2 2719 2971 -343 186 43 0 0 chr6 33187442 33187465 -156092089 + (A)n Simple_repeat Simple_repeat 1 23 0 503 303 116 45 chr6 33187808 33188230 -156091324 + L1 LINE L1 4569 5020 -1126 527 314 171 14 chr6 33188837 33189276 -156090278 + L2 LINE L2 1031 1538 -1776 448 286 66 121 chr6 33189285 33189544 -156090010 + L2 LINE L2 1934 2206 -1108 982 177 0 0 chr6 33189544 33189708 -156089846 - AluJo SINE Alu -2 300 137 448 286 66 121 chr6 33189708 33189764 -156089790 + L2 LINE L2 2206 2263 -1051 858 145 0 0 chr6 33189764 33189888 -156089666 - AluJo SINE Alu -175 127 4 448 286 66 121 chr6 33189888 33190159 -156089395 + L2 LINE L2 2263 2489 -825 6861 57 7 0 chr6 33190174 33191020 -156088534 - L1PA7 LINE L1 -15 6139 5288 432 326 96 14 chr6 33191149 33191287 -156088267 + L2 LINE L2 2999 3124 -189 1981 107 0 0 chr6 33191287 33191558 -156087996 + AluSg1 SINE Alu 38 308 -1 432 326 96 14 chr6 33191558 33191710 -156087844 + L2 LINE L2 3124 3313 0 567 295 82 62 chr6 33192183 33192539 -156087015 + L1MC4a LINE L1 4623 4985 -1161 296 313 101 46 chr6 33192567 33192784 -156086770 + L1MC4a LINE L1 5679 5907 -1901 252 0 0 0 chr6 33192798 33192826 -156086728 + (TG)n Simple_repeat Simple_repeat 2 29 0 231 283 0 0 chr6 33193033 33193093 -156086461 + A-rich Low_complexity Low_complexity 5 64 0 237 329 38 0 chr6 33193198 33193277 -156086277 - MIR3 SINE MIR -11 197 116 285 269 21 21 chr6 33194680 33194773 -156084781 - L3b LINE CR1 -201 1382 1290 290 150 167 0 chr6 33195278 33195338 -156084216 + MER21B LTR ERV1 1 70 -793 445 211 67 19 chr6 33195338 33195442 -156084112 - Tigger5 DNA MER2_type 0 2323 2215 920 244 96 84 chr6 33195565 33195649 -156083905 + MER21B LTR ERV1 98 180 -683 2327 90 0 3 chr6 33195649 33195961 -156083593 - AluSq SINE Alu -2 311 1 920 244 96 84 chr6 33195961 33196221 -156083333 + MER21B LTR ERV1 180 446 -417 344 323 105 27 chr6 33196234 33196491 -156083063 + L2 LINE L2 677 953 -2361 314 362 26 0 chr6 33196514 33196630 -156082924 - MIR SINE MIR -133 129 11 207 239 0 0 chr6 33196690 33196757 -156082797 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 1587 240 49 48 chr6 33197122 33197689 -156081865 + L1MC4a LINE L1 5315 5882 -1926 2138 75 60 0 chr6 33197699 33197980 -156081574 + AluY SINE Alu 1 298 -13 29 0 0 0 chr6 33198094 33198123 -156081431 + AT_rich Low_complexity Low_complexity 1 29 0 356 264 192 10 chr6 33198123 33198316 -156081238 + L1MC4a LINE L1 5879 6106 -1702 201 255 39 0 chr6 33198605 33198656 -156080898 + L2 LINE L2 3218 3270 -2 365 351 0 15 chr6 33198887 33199018 -156080536 + MER91A DNA MER1_type 60 188 -8 194 292 42 14 chr6 33199105 33199177 -156080377 + L2 LINE L2 3201 3274 -39 1120 162 43 32 chr6 33200388 33200641 -156078913 + L1MA8 LINE L1 5903 6158 -133 2199 219 151 11 chr6 33201118 33201681 -156077873 + MER69 DNA AcHobo 50 691 -1835 2571 191 96 36 chr6 33201711 33202457 -156077097 + MER69 DNA AcHobo 1650 2459 -67 2045 100 0 37 chr6 33202457 33202778 -156076776 - AluSc SINE Alu 0 309 1 2571 191 96 36 chr6 33202778 33202848 -156076706 + MER69 DNA AcHobo 2459 2523 -3 180 222 0 0 chr6 33203709 33203745 -156075809 - MIR SINE MIR -116 146 111 1714 196 0 0 chr6 33204941 33205253 -156074301 + AluJb SINE Alu 1 312 0 266 259 88 54 chr6 33205725 33205930 -156073624 - L1MC4a LINE L1 -1744 6064 5853 205 314 0 0 chr6 33205995 33206046 -156073508 - L2 LINE L2 -32 3240 3190 23 54 0 0 chr6 33206073 33206110 -156073444 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr6 33206617 33206648 -156072906 + AT_rich Low_complexity Low_complexity 1 31 0 2206 95 10 3 chr6 33206945 33207251 -156072303 - AluSx SINE Alu -4 308 1 755 140 185 0 chr6 33207412 33207569 -156071985 - MER53 DNA DNA -3 186 1 390 234 81 8 chr6 33207748 33207872 -156071682 - L1ME4a LINE L1 -3 6118 5986 325 285 95 88 chr6 33207899 33208183 -156071371 + L2 LINE L2 3028 3313 0 296 271 8 81 chr6 33208222 33208239 -156071315 - L1MC4a LINE L1 -453 5668 5651 2478 172 82 64 chr6 33208239 33208850 -156070704 - LTR26E LTR ERV1 0 622 1 296 271 8 81 chr6 33208850 33208992 -156070562 - L1MC4a LINE L1 -470 5651 5517 1794 158 32 84 chr6 33209147 33209435 -156070119 - MLT1B LTR MaLR 0 390 127 4555 107 35 51 chr6 33209435 33209846 -156069708 + MER4E LTR ERV1 1 394 -372 2140 103 3 3 chr6 33209846 33210147 -156069407 + AluSx SINE Alu 2 302 -10 4555 107 35 51 chr6 33210147 33210514 -156069040 + MER4E LTR ERV1 394 766 0 1794 158 32 84 chr6 33210514 33210630 -156068924 - MLT1B LTR MaLR -263 127 7 253 320 112 11 chr6 33210675 33210853 -156068701 - L3 LINE CR1 -298 1279 1084 371 127 0 0 chr6 33211045 33211100 -156068454 - MLT2D LTR ERVL -359 55 1 2134 121 3 3 chr6 33211609 33212041 -156067513 + AluSq SINE Alu 1 432 0 299 249 62 84 chr6 33212285 33212548 -156067006 - L1ME LINE L1 -548 5576 5319 385 256 73 46 chr6 33212553 33212772 -156066782 - L1ME4a LINE L1 -3 6118 5894 1252 156 33 0 chr6 33212989 33213201 -156066353 + MER20 DNA MER1_type 1 219 0 2192 64 0 0 chr6 33213208 33213517 -156066037 - AluY SINE Alu 0 309 1 861 240 133 13 chr6 33213577 33213810 -156065744 + MIR SINE MIR 2 262 0 317 241 141 31 chr6 33213876 33214035 -156065519 - L1ME4a LINE L1 -569 5552 5410 1755 145 0 60 chr6 33214052 33214370 -156065184 - AluJb SINE Alu -1 311 13 953 259 63 32 chr6 33214707 33215085 -156064469 - L1MC4a LINE L1 -1875 5933 5544 2275 108 0 3 chr6 33215507 33215821 -156063733 + AluSq SINE Alu 1 313 0 210 320 19 0 chr6 33216156 33216233 -156063321 + MIR SINE MIR 36 114 -109 587 291 23 17 chr6 33216237 33216409 -156063145 + MER5A DNA MER1_type 1 173 -16 650 209 23 0 chr6 33216788 33216917 -156062637 + MER94 DNA DNA 2 133 -1 375 270 74 20 chr6 33218731 33218879 -156060675 + MIR SINE MIR 36 191 -71 1755 121 29 35 chr6 33219561 33219875 -156059679 + AluJb SINE Alu 1 312 0 922 133 50 115 chr6 33220672 33220950 -156058604 - Charlie5 DNA MER1_type -1 2611 2352 * 1025 137 35 25 chr6 33220948 33221018 -156058536 - Charlie5 DNA MER1_type -2424 200 132 1859 131 65 0 chr6 33221018 33221309 -156058245 - AluSx SINE Alu -2 310 1 1025 137 35 25 chr6 33221309 33221435 -156058119 - Charlie5 DNA MER1_type -2492 132 2 211 267 26 35 chr6 33222163 33222279 -156057275 + CT-rich Low_complexity Low_complexity 6 120 0 2249 101 0 0 chr6 33222321 33222619 -156056935 - AluSq SINE Alu -7 306 9 258 32 0 0 chr6 33223773 33223804 -156055750 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1980 100 11 4 chr6 33223806 33224085 -156055469 - AluSq SINE Alu -32 281 1 205 200 0 0 chr6 33224289 33224329 -156055225 + T-rich Low_complexity Low_complexity 1 40 0 1230 178 58 3 chr6 33225114 33225421 -156054133 + MER33 DNA MER1_type 1 302 -22 342 315 55 7 chr6 33226214 33226360 -156053194 - MIR SINE MIR -60 202 50 381 202 102 3 chr6 33229243 33229357 -156050197 + L1MC/D LINE L1 5652 5775 -412 186 333 0 16 chr6 33230378 33230441 -156049113 + L2 LINE L2 3247 3308 -5 240 261 120 22 chr6 33230482 33230574 -156048980 + L2 LINE L2 2985 3085 -187 231 170 0 0 chr6 33231265 33231312 -156048242 + (CA)n Simple_repeat Simple_repeat 2 48 0 1434 201 120 11 chr6 33231322 33231671 -156047883 - MLT1C LTR MaLR 0 467 81 1654 158 0 69 chr6 33231673 33232149 -156047405 - AluJb SINE Alu 0 453 1 394 207 46 0 chr6 33232151 33232238 -156047316 - MLT1C LTR MaLR -375 92 2 350 234 64 117 chr6 33232998 33233186 -156046368 - L1MC4 LINE L1 -1 8041 7864 437 297 47 20 chr6 33233578 33233726 -156045828 + L2 LINE L2 3162 3313 0 2262 236 29 11 chr6 33233854 33234413 -156045141 - MER90 LTR ERV1 -5 570 2 2153 81 16 10 chr6 33234513 33234822 -156044732 - AluY SINE Alu 0 311 1 1865 139 3 23 chr6 33235650 33235960 -156043594 - AluSx SINE Alu -2 310 7 423 0 0 0 chr6 33236067 33236114 -156043440 + (TG)n Simple_repeat Simple_repeat 2 48 0 527 235 181 47 chr6 33236142 33236419 -156043135 + HAL1 LINE L1 2190 2503 -4 360 277 54 34 chr6 33236858 33237006 -156042548 - L1MC4a LINE L1 -1878 5930 5780 745 143 16 16 chr6 33237190 33237316 -156042238 - FLAM_C SINE Alu -7 126 1 344 304 170 0 chr6 33237630 33237742 -156041812 + L2 LINE L2 3183 3313 0 499 163 0 0 chr6 33237831 33237911 -156041643 + MIR SINE MIR 73 152 -110 2318 78 13 3 chr6 33238111 33238420 -156041134 - AluSp SINE Alu 0 313 2 26 0 0 0 chr6 33239395 33239421 -156040133 + AT_rich Low_complexity Low_complexity 1 26 0 534 281 182 6 chr6 33239450 33239785 -156039769 + L2 LINE L2 2239 2632 -682 496 302 81 9 chr6 33239789 33240079 -156039475 + L2 LINE L2 2797 3104 -209 407 341 7 0 chr6 33240079 33240214 -156039340 - L2 LINE L2 -240 3032 2897 590 266 74 10 chr6 33240420 33240623 -156038931 + L2 LINE L2 3098 3313 0 220 195 0 0 chr6 33240795 33240836 -156038718 + MIR3 SINE MIR 117 157 -51 211 319 0 14 chr6 33241097 33241166 -156038388 + GA-rich Low_complexity Low_complexity 4 71 0 323 337 67 36 chr6 33241354 33241547 -156038007 + L2 LINE L2 2431 2629 -685 481 339 15 20 chr6 33241732 33241927 -156037627 + L2 LINE L2 2897 3090 -182 949 149 29 6 chr6 33241956 33242130 -156037424 - MER53 DNA DNA -3 186 9 2307 85 7 0 chr6 33242457 33242764 -156036790 - AluSc SINE Alu 0 309 1 357 290 30 0 chr6 33242875 33242975 -156036579 + MIR3 SINE MIR 106 208 0 656 197 0 41 chr6 33243221 33243343 -156036211 + FLAM_C SINE Alu 2 118 -25 225 0 0 0 chr6 33243343 33243368 -156036186 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 927 270 159 31 chr6 33243370 33243885 -156035669 + L2 LINE L2 2712 3300 -13 195 100 0 0 chr6 33243885 33243915 -156035639 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1946 129 4 0 chr6 33243939 33244218 -156035336 + AluSx SINE Alu 1 280 -32 192 40 0 0 chr6 33244218 33244243 -156035311 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 43891 32 22 1 chr6 33244301 33250338 -156029216 + L1PA3 LINE L1 1 6166 0 394 317 81 6 chr6 33250595 33250756 -156028798 + MIR SINE MIR 20 192 -70 998 276 75 41 chr6 33252307 33252745 -156026809 - L2 LINE L2 -8 3305 2853 806 221 23 6 chr6 33252781 33252953 -156026601 - MER5B DNA MER1_type -3 175 1 1459 191 9 8 chr6 33253242 33253532 -156026022 - MLT1D LTR MaLR 0 505 231 291 290 10 30 chr6 33254134 33254249 -156025305 + GA-rich Low_complexity Low_complexity 1 196 0 334 270 197 26 chr6 33254304 33254456 -156025098 + MIR3 SINE MIR 3 180 -28 200 339 0 35 chr6 33257179 33257294 -156022260 + G-rich Low_complexity Low_complexity 3 113 0 1688 181 138 42 chr6 33257868 33258294 -156021260 - MLT1C LTR MaLR 0 467 1 225 282 153 0 chr6 33264264 33264349 -156015205 - L2 LINE L2 -43 3229 3132 2275 123 113 49 chr6 33265256 33265664 -156013890 - Tigger2a DNA MER2_type 0 434 1 450 222 69 21 chr6 33266458 33266602 -156012952 + L1M4 LINE L1 5079 5229 -917 30 0 0 0 chr6 33266604 33266634 -156012920 + AT_rich Low_complexity Low_complexity 1 30 0 1982 259 65 44 chr6 33266899 33267900 -156011654 + L1MEd LINE L1 318 1384 -4862 1837 139 6 59 chr6 33268055 33268378 -156011176 + AluJb SINE Alu 1 306 -6 512 266 91 35 chr6 33271818 33272017 -156007537 - MIR SINE MIR -48 214 5 256 161 18 18 chr6 33274124 33274180 -156005374 + MIR SINE MIR 96 151 -111 323 378 67 31 chr6 33274478 33274671 -156004883 - L2 LINE L2 -25 3247 3048 801 199 64 6 chr6 33275098 33275269 -156004285 + MER3 DNA MER1_type 29 209 0 763 199 151 102 chr6 33276037 33276460 -156003094 - L1ME3A LINE L1 0 6170 5727 230 196 0 0 chr6 33276647 33276693 -156002861 + L2 LINE L2 3263 3308 -5 2117 181 15 2 chr6 33277253 33277657 -156001897 - L1 LINE L1 -2299 3847 3439 1231 145 26 5 chr6 33277658 33277851 -156001703 + AluJb SINE Alu 100 296 -16 5921 135 53 26 chr6 33277913 33279124 -156000430 + L1MA4A LINE L1 4750 6024 -279 303 49 0 0 chr6 33279124 33279165 -156000389 + (TG)n Simple_repeat Simple_repeat 1 41 0 5921 135 53 26 chr6 33279165 33279447 -156000107 + L1MA4A LINE L1 6024 6297 -6 6117 199 47 62 chr6 33279510 33280175 -155999379 - L1MB7 LINE L1 -61 6123 5450 291 114 0 0 chr6 33280175 33280219 -155999335 + (TG)n Simple_repeat Simple_repeat 2 45 0 2177 100 0 4 chr6 33280222 33280502 -155999052 - AluSg SINE Alu -31 279 1 6117 199 47 62 chr6 33280502 33280620 -155998934 - L1MB7 LINE L1 -736 5448 5330 2153 134 0 0 chr6 33280620 33280918 -155998636 - AluSx SINE Alu -12 300 3 6117 199 47 62 chr6 33280918 33281108 -155998446 - L1MB7 LINE L1 -854 5330 5139 374 125 111 0 chr6 33281108 33281180 -155998374 - L1MA7 LINE L1 -1 6290 6211 6117 199 47 62 chr6 33281180 33281314 -155998240 - L1MB7 LINE L1 -1045 5139 5005 291 28 0 0 chr6 33281314 33281350 -155998204 + (TA)n Simple_repeat Simple_repeat 2 37 0 2332 85 0 0 chr6 33281350 33281632 -155997922 - AluSg SINE Alu -28 282 1 6117 199 47 62 chr6 33281632 33281749 -155997805 - L1MB7 LINE L1 -1178 5006 4889 1829 218 21 46 chr6 33281749 33282226 -155997328 - MLT1C LTR MaLR 0 467 3 6117 199 47 62 chr6 33282226 33282472 -155997082 - L1MB7 LINE L1 -1295 4889 4641 1888 160 6 13 chr6 33282472 33282784 -155996770 - AluJo SINE Alu -2 310 1 6117 199 47 62 chr6 33282784 33283411 -155996143 - L1MB7 LINE L1 -1543 4641 4007 2122 138 126 31 chr6 33283411 33283801 -155995753 + MSTA LTR MaLR 1 427 -1 6117 199 47 62 chr6 33283801 33283884 -155995670 - L1MB7 LINE L1 -2177 4007 3924 613 238 0 24 chr6 33283884 33284010 -155995544 - FLAM_A SINE Alu -7 126 4 6117 199 47 62 chr6 33284010 33284382 -155995172 - L1MB7 LINE L1 -2260 3924 3576 2092 179 3 29 chr6 33284459 33284834 -155994720 + MLT1A1 LTR MaLR 1 365 0 1281 135 90 12 chr6 33284843 33285088 -155994466 + MER21A LTR ERV1 1 264 -667 2894 144 124 10 chr6 33285093 33285592 -155993962 + MER21A LTR ERV1 376 931 0 501 326 47 63 chr6 33286114 33286476 -155993078 + LTR67 LTR ERVL 104 459 -98 209 33 33 0 chr6 33286498 33286528 -155993026 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 318 299 132 7 chr6 33286615 33286759 -155992795 + MER5B DNA MER1_type 1 162 -16 289 278 308 0 chr6 33286788 33286921 -155992633 + MER5A DNA MER1_type 9 182 -7 2317 277 111 29 chr6 33286994 33288127 -155991427 + L2 LINE L2 2108 3311 -2 274 233 181 35 chr6 33288094 33288210 -155991344 - L3 LINE CR1 -489 1088 956 * 4099 219 100 41 chr6 33288981 33289404 -155990150 - Charlie1a DNA MER1_type -1306 1455 1058 1383 197 48 7 chr6 33289404 33289699 -155989855 - AluJo SINE Alu -5 307 1 4099 219 100 41 chr6 33289699 33290291 -155989263 - Charlie1a DNA MER1_type -1703 1058 336 2013 141 3 13 chr6 33290291 33290596 -155988958 - AluSx SINE Alu -10 302 1 4099 219 100 41 chr6 33290596 33290947 -155988607 - Charlie1a DNA MER1_type -2425 336 7 1446 181 0 106 chr6 33291269 33291600 -155987954 - AluJo SINE Alu -16 296 1 1746 197 57 17 chr6 33291663 33292014 -155987540 - MLT1A1 LTR MaLR 0 365 1 1134 168 35 15 chr6 33292016 33292218 -155987336 + MER3 DNA MER1_type 2 207 -2 1756 171 24 0 chr6 33292653 33292940 -155986614 - AluSx SINE Alu -18 294 1 2100 261 83 4 chr6 33293269 33293832 -155985722 - MER90 LTR ERV1 -2 612 5 2013 64 4 16 chr6 33294083 33294363 -155985191 + AluY SINE Alu 36 312 0 287 343 24 14 chr6 33294371 33294584 -155984970 + L1ME LINE L1 5553 5767 -354 230 326 35 28 chr6 33294598 33294739 -155984815 - MIR SINE MIR -20 242 101 226 356 46 26 chr6 33294963 33295157 -155984397 - L2 LINE L2 0 3313 3116 1959 270 143 56 chr6 33295218 33296095 -155983459 + HAL1 LINE L1 972 2018 -489 1120 208 124 69 chr6 33296095 33296441 -155983113 - MLT1A1 LTR MaLR 0 365 1 1959 270 143 56 chr6 33296441 33296968 -155982586 + HAL1 LINE L1 2018 2498 -9 309 259 54 45 chr6 33296969 33297081 -155982473 - L2 LINE L2 -1502 1812 1700 21 36 0 0 chr6 33297631 33297659 -155981895 + AT_rich Low_complexity Low_complexity 1 28 0 2292 71 3 14 chr6 33298509 33298805 -155980749 - AluY SINE Alu -18 293 1 2558 180 87 74 chr6 33299242 33299528 -155980026 + MER65-int LTR ERV1 817 1098 -1287 2423 77 0 0 chr6 33299528 33299825 -155979729 - AluY SINE Alu -14 297 1 2558 180 87 74 chr6 33299825 33300259 -155979295 + MER65-int LTR ERV1 1098 1531 -854 2969 6 0 0 chr6 33300259 33300577 -155978977 - AluYb8 SINE Alu 0 318 1 2558 180 87 74 chr6 33300577 33300677 -155978877 + MER65-int LTR ERV1 1531 1628 -757 7913 165 19 110 chr6 33300678 33302319 -155977235 + L1MB3 LINE L1 3405 4812 -1334 2259 82 41 0 chr6 33302319 33302612 -155976942 - AluSg SINE Alu -5 305 1 7913 165 19 110 chr6 33302612 33303088 -155976466 + L1MB3 LINE L1 4812 5330 -816 3618 96 54 15 chr6 33303089 33303622 -155975932 - L1PB1 LINE L1 -84 6067 5514 1379 50 0 2 chr6 33303623 33303881 -155975673 + AluY SINE Alu 2 309 -2 7674 186 4 6 chr6 33303881 33305656 -155973898 - L1PB1 LINE L1 -621 5530 3760 895 109 32 19 chr6 33305646 33305802 -155973752 + L1MA5 LINE L1 6143 6300 0 * 258 303 109 40 chr6 33305864 33306039 -155973515 + MLT1K LTR MaLR 152 338 -250 181 297 116 58 chr6 33306284 33306439 -155973115 + MIR SINE MIR 74 237 -25 2762 170 42 5 chr6 33307547 33308124 -155971430 + L1MB3 LINE L1 5586 6183 0 1509 155 97 7 chr6 33308195 33308473 -155971081 - AluJo SINE Alu -9 303 1 393 225 92 25 chr6 33308484 33308604 -155970950 - L1MC5 LINE L1 -44 7917 7790 1989 194 16 32 chr6 33308669 33309224 -155970330 - L1MC3 LINE L1 -93 7692 7000 673 252 69 69 chr6 33309226 33309556 -155969998 - L1MC5 LINE L1 -178 7783 7451 2951 179 16 11 chr6 33309556 33310108 -155969446 - MER41D LTR ERV1 0 557 3 673 252 69 69 chr6 33310108 33310209 -155969345 - L1MC5 LINE L1 -509 7452 7352 1825 185 61 26 chr6 33311453 33311881 -155967673 - LTR47B LTR ERVL 0 443 1 304 229 14 0 chr6 33311887 33311957 -155967597 - MER4B-int LTR ERV1 -688 6070 6000 520 344 37 37 chr6 33312717 33313261 -155966293 - LTR57-int LTR ERVL -1181 4162 3619 539 350 60 45 chr6 33313428 33314111 -155965443 - LTR57-int LTR ERVL -1925 3418 2726 404 236 40 0 chr6 33314209 33314357 -155965197 - L1MC5 LINE L1 -509 7452 7299 636 105 0 21 chr6 33314376 33314471 -155965083 + MER4A LTR ERV1 1 93 -571 1132 169 4 24 chr6 33314475 33314712 -155964842 + MER4A LTR ERV1 261 551 -113 3468 164 44 9 chr6 33314856 33315521 -155964033 - L1MB4 LINE L1 0 6249 5562 2128 114 0 7 chr6 33315565 33315864 -155963690 - AluSc SINE Alu -12 297 1 1544 226 46 27 chr6 33315875 33316352 -155963202 - L1MB4 LINE L1 -757 5458 4973 21 0 0 0 chr6 33316526 33316547 -155963007 + AT_rich Low_complexity Low_complexity 1 21 0 304 285 169 15 chr6 33317869 33317999 -155961555 + MIR SINE MIR 22 171 -91 558 176 170 42 chr6 33318000 33318165 -155961389 - MER20 DNA MER1_type -2 217 32 812 203 38 0 chr6 33318674 33318832 -155960722 + FRAM SINE Alu 1 162 -14 440 242 45 50 chr6 33318915 33319197 -155960357 - L1MB4 LINE L1 -3829 2400 2145 1109 298 97 25 chr6 33319480 33320260 -155959294 + L2 LINE L2 2352 3203 -110 925 170 55 77 chr6 33320260 33320495 -155959059 + MER30 DNA MER1_type 1 230 0 1109 298 97 25 chr6 33320495 33320613 -155958941 + L2 LINE L2 3203 3311 -2 180 152 0 0 chr6 33325270 33325303 -155954251 + T-rich Low_complexity Low_complexity 1 33 0 283 268 56 0 chr6 33326104 33326175 -155953379 + L2 LINE L2 2686 2760 -554 218 204 0 0 chr6 33326224 33326273 -155953281 + L2 LINE L2 3265 3313 0 289 191 29 0 chr6 33326408 33326476 -155953078 - MLT1E3 LTR MaLR 0 624 555 1200 224 10 20 chr6 33326510 33326809 -155952745 - AluJo SINE Alu -16 296 1 1891 241 90 21 chr6 33326809 33327332 -155952222 - MLT1E3 LTR MaLR -52 572 14 1535 170 7 10 chr6 33327505 33327793 -155951761 + AluJb SINE Alu 1 287 -25 941 208 15 15 chr6 33327866 33328063 -155951491 - MLT1F1 LTR MaLR 0 567 371 501 323 18 0 chr6 33328073 33328237 -155951317 - LTR16B LTR ERVL -236 228 62 939 359 46 30 chr6 33328257 33329343 -155950211 - HERV16 LTR ERVL -516 5248 4145 3021 315 48 35 chr6 33329535 33330331 -155949223 - HERV16 LTR ERVL -1900 3096 2312 258 32 0 0 chr6 33330331 33330362 -155949192 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1895 129 7 0 chr6 33330366 33330645 -155948909 - AluSq SINE Alu -32 281 1 3021 315 48 35 chr6 33330645 33332231 -155947323 - HERV16 LTR ERVL -2686 2310 858 807 306 72 27 chr6 33332921 33333365 -155946189 - LTR16B LTR ERVL 0 464 1 2744 232 71 103 chr6 33333365 33334403 -155945151 - L2 LINE L2 -1658 1656 673 1887 218 101 27 chr6 33334403 33334986 -155944568 - MLT1E2 LTR MaLR 0 626 1 2744 232 71 103 chr6 33334986 33335354 -155944200 - L2 LINE L2 -2641 673 295 607 163 98 0 chr6 33335354 33335477 -155944077 - Tigger1 DNA MER2_type -242 2176 2042 181 367 0 51 chr6 33335507 33335586 -155943968 + MIR SINE MIR 23 97 -165 180 195 98 0 chr6 33335654 33335695 -155943859 + MIR SINE MIR 120 164 -98 237 328 0 0 chr6 33338103 33338170 -155941384 - MER82 DNA MER2_type -91 562 496 275 305 49 44 chr6 33338233 33338413 -155941141 + MIR SINE MIR 21 199 -63 1002 161 33 0 chr6 33338834 33339014 -155940540 - MLT1B LTR MaLR 0 390 205 302 73 0 109 chr6 33339011 33339066 -155940488 - MLT1B LTR MaLR -341 49 1 * 5701 150 25 27 chr6 33339491 33340936 -155938618 - L1MA4A LINE L1 -5 6298 4861 1012 207 18 0 chr6 33340948 33341165 -155938389 - L1MA4A LINE L1 -2184 3962 3742 1960 252 99 17 chr6 33341211 33341929 -155937625 - L1ME2 LINE L1 -2 6162 5374 1476 192 7 7 chr6 33342593 33342885 -155936669 - AluJb SINE Alu -20 292 1 414 286 118 16 chr6 33342928 33343173 -155936381 - L1ME3 LINE L1 -261 5901 5632 268 329 31 39 chr6 33343304 33343590 -155935964 + L1MC4a LINE L1 5770 6053 -1755 717 142 9 0 chr6 33344530 33344636 -155934918 + MER5A DNA MER1_type 3 109 -80 251 256 26 68 chr6 33344562 33344679 -155934875 - MER5A DNA MER1_type -23 166 55 * 401 277 30 136 chr6 33344848 33345039 -155934515 + L2 LINE L2 2970 3111 -161 414 39 0 0 chr6 33345039 33345091 -155934463 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 401 277 30 136 chr6 33345091 33345238 -155934316 + L2 LINE L2 3111 3272 0 1444 178 14 10 chr6 33345519 33345811 -155933743 + AluJb SINE Alu 1 293 -19 1234 205 40 44 chr6 33346530 33346827 -155932727 + AluJo SINE Alu 1 296 -6 589 297 158 27 chr6 33347143 33347422 -155932132 - L1ME4a LINE L1 -207 5914 5584 1764 122 0 0 chr6 33347422 33347676 -155931878 - AluSx SINE Alu -12 300 47 589 297 158 27 chr6 33347676 33347726 -155931828 - L1ME4a LINE L1 -537 5584 5542 781 312 122 25 chr6 33347731 33348451 -155931103 - L2 LINE L2 -6 3307 2513 2251 91 0 0 chr6 33348554 33348861 -155930693 + AluSg SINE Alu 1 307 -3 534 216 0 0 chr6 33349763 33349939 -155929615 + (CA)n Simple_repeat Simple_repeat 1 176 0 7643 34 0 0 chr6 33350756 33352450 -155927104 - L1PA3 LINE L1 0 6155 4504 904 139 52 17 chr6 33352929 33353101 -155926453 - FRAM SINE Alu -1 175 1 325 278 7 76 chr6 33353392 33353536 -155926018 + L1ME1 LINE L1 6027 6160 -6 207 273 0 65 chr6 33353829 33353906 -155925648 + CT-rich Low_complexity Low_complexity 1 72 0 202 255 20 71 chr6 33355104 33355202 -155924352 + MIR3 SINE MIR 6 98 -110 426 194 0 0 chr6 33355511 33355583 -155923971 + FRAM/FAM SINE Alu 1 71 -105 949 125 230 5 chr6 33357317 33357517 -155922037 - L1MB3 LINE L1 -1 6182 5938 * 2063 200 32 13 chr6 33357507 33357757 -155921797 - L1MB3 LINE L1 -456 5727 5483 240 35 0 0 chr6 33357757 33357786 -155921768 + (TG)n Simple_repeat Simple_repeat 2 30 0 2063 200 32 13 chr6 33357786 33358353 -155921201 - L1MB3 LINE L1 -700 5483 4899 1369 317 14 23 chr6 33361727 33362288 -155917266 - BaEV-int LTR ERV1 -138 7647 7092 300 53 0 0 chr6 33362289 33362327 -155917227 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 328 333 0 0 chr6 33362384 33362474 -155917080 + L1MC4 LINE L1 6614 6703 -1339 471 291 49 68 chr6 33362550 33363163 -155916391 - BaEV-int LTR ERV1 -1159 5490 3368 300 333 0 8 chr6 33363628 33363760 -155915794 - BaEV-int LTR ERV1 -2101 5684 5554 2433 81 0 3 chr6 33363900 33364197 -155915357 - AluY SINE Alu -15 296 1 676 312 42 8 chr6 33364434 33364697 -155914857 - BaEV-int LTR ERV1 -3214 4571 4300 400 240 293 5 chr6 33365455 33365663 -155913891 + MER102a DNA MER1_type 60 327 -3 365 165 35 24 chr6 33366200 33366285 -155913269 - LTR18B LTR ERVL -261 353 268 285 154 19 0 chr6 33366335 33366387 -155913167 - LTR18B LTR ERVL -216 398 346 186 43 0 0 chr6 33366387 33366410 -155913144 + (TC)n Simple_repeat Simple_repeat 1 23 0 793 346 19 21 chr6 33366425 33367046 -155912508 - BaEV-int LTR ERV1 -4957 1692 1073 6835 50 9 0 chr6 33367060 33368379 -155911175 - L1PA7 LINE L1 -10 6144 4861 476 311 5 26 chr6 33368640 33368830 -155910724 - BaEV-int LTR ERV1 -6815 970 785 515 264 14 10 chr6 33368830 33369038 -155910516 - L1M4 LINE L1 -2688 3458 3250 4101 253 45 30 chr6 33369043 33370299 -155909255 + MER21B-int LTR ERV1 2868 4141 -50 505 248 109 7 chr6 33370397 33370534 -155909020 + MER21B LTR ERV1 19 169 -694 1785 198 65 8 chr6 33370553 33370952 -155908602 - MSTB1 LTR MaLR 0 432 11 2058 251 32 16 chr6 33370962 33371527 -155908027 - MSTA-int LTR MaLR 0 1651 1078 2506 184 13 0 chr6 33371536 33372009 -155907545 - MSTA-int LTR MaLR -1172 479 1 2285 171 41 7 chr6 33372009 33372423 -155907131 - MSTA LTR MaLR 0 428 1 1486 175 3 31 chr6 33375309 33375595 -155903959 - AluJo SINE Alu -23 289 12 359 303 67 0 chr6 33375968 33376087 -155903467 + L2 LINE L2 2639 2765 -549 459 268 24 8 chr6 33376095 33376218 -155903336 + L2 LINE L2 3188 3312 -1 2094 226 71 22 chr6 33376374 33376955 -155902599 - MLT1E3 LTR MaLR -2 622 14 1714 235 35 58 chr6 33377166 33377570 -155901984 - MLT1F1 LTR MaLR 0 567 177 2124 118 4 0 chr6 33377570 33377885 -155901669 - AluSg SINE Alu 0 318 3 1714 235 35 58 chr6 33377885 33378045 -155901509 - MLT1F1 LTR MaLR -390 177 15 231 103 0 0 chr6 33378155 33378194 -155901360 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 690 189 0 30 chr6 33378194 33378326 -155901228 - AluJb SINE Alu -26 286 159 2047 127 3 0 chr6 33379429 33379740 -155899814 + AluSq SINE Alu 1 312 0 297 285 143 29 chr6 33379996 33380281 -155899273 - L1ME LINE L1 -301 5869 5552 182 298 18 0 chr6 33380591 33380648 -155898906 - L2 LINE L2 -1477 1837 1780 352 218 0 0 chr6 33380709 33380787 -155898767 - MLT1F1 LTR MaLR -2 565 488 622 332 33 10 chr6 33380903 33381292 -155898262 - LTR16B LTR ERVL -4 460 63 263 282 66 44 chr6 33381300 33381481 -155898073 - HERV16 LTR ERVL -504 5260 5076 192 97 0 0 chr6 33381691 33381722 -155897832 + (CATA)n Simple_repeat Simple_repeat 2 32 0 200 128 0 26 chr6 33381723 33381762 -155897792 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 257 275 49 63 chr6 33381786 33381928 -155897626 - HERV16 LTR ERVL -534 4462 4323 678 341 12 4 chr6 33382189 33382444 -155897110 - HERV16 LTR ERVL -1290 4364 4108 1931 328 76 43 chr6 33382568 33384227 -155895327 - HERV16 LTR ERVL -1900 3096 1749 394 117 0 1 chr6 33384478 33384562 -155894992 + MER30B DNA MER1_type 140 230 0 197 313 70 17 chr6 33384565 33384680 -155894874 + L2 LINE L2 3191 3311 -2 192 275 43 29 chr6 33384692 33384761 -155894793 - L3 LINE CR1 -550 1027 958 210 270 140 20 chr6 33390101 33390201 -155889353 + L2 LINE L2 2650 2761 -553 1688 226 96 46 chr6 33390433 33390690 -155888864 - MLT1E3 LTR MaLR -51 573 330 2219 83 20 10 chr6 33390690 33390991 -155888563 - AluY SINE Alu -7 304 1 1688 226 96 46 chr6 33390991 33391277 -155888277 - MLT1E3 LTR MaLR -294 330 3 1429 227 25 0 chr6 33391440 33391726 -155887828 + AluJo SINE Alu 1 293 -19 1975 222 44 28 chr6 33391797 33392242 -155887312 - MLT1F1 LTR MaLR -8 559 102 2257 149 5 24 chr6 33392242 33392624 -155886930 - THE1C LTR MaLR 0 375 1 1975 222 44 28 chr6 33392624 33392723 -155886831 - MLT1F1 LTR MaLR -465 102 6 6424 82 38 25 chr6 33392811 33393810 -155885744 - L1PA10 LINE L1 -5 6163 5164 3532 118 24 4 chr6 33394639 33395140 -155884414 + MER9 LTR ERVK 1 511 0 363 248 31 28 chr6 33395181 33395289 -155884265 + L1MC4 LINE L1 1970 6983 -1339 356 322 0 0 chr6 33395295 33395385 -155884169 - L1MC4 LINE L1 -1339 6703 6614 * 362 311 0 0 chr6 33395321 33395411 -155884143 + L1MC4 LINE L1 6614 6703 -1339 357 319 119 7 chr6 33395521 33395831 -155883723 - L1ME3A LINE L1 -298 5872 5528 231 252 19 9 chr6 33396070 33396177 -155883377 + GA-rich Low_complexity Low_complexity 3 110 0 297 308 0 33 chr6 33396190 33396619 -155882935 + GA-rich Low_complexity Low_complexity 1 116 0 301 256 22 0 chr6 33396223 33396249 -155883305 + A-rich Low_complexity Low_complexity 5 29 -67 2533 84 3 0 chr6 33396249 33396559 -155882995 + AluY SINE Alu 1 311 0 301 256 22 0 chr6 33396559 33396622 -155882932 + A-rich Low_complexity Low_complexity 29 96 0 313 143 0 0 chr6 33396728 33396777 -155882777 - MLT1F LTR MaLR -3 539 491 350 280 89 19 chr6 33397281 33397438 -155882116 - ERVL LTR ERVL -3608 2156 1989 9959 30 0 198 chr6 33397601 33399325 -155880229 - SVA Other Other -3 1383 1 234 0 0 0 chr6 33399325 33399351 -155880203 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 406 117 0 1 chr6 33399606 33399690 -155879864 + MER30B DNA MER1_type 140 230 0 200 316 79 18 chr6 33399693 33399807 -155879747 + L2 LINE L2 3191 3311 -2 260 301 90 38 chr6 33399816 33399949 -155879605 - L3 LINE CR1 -550 1027 888 204 40 0 0 chr6 33399956 33399981 -155879573 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 3954 175 65 47 chr6 33400447 33401384 -155878170 + LTR13 LTR ERVK 1 954 0 222 151 0 38 chr6 33404176 33404229 -155875325 + C-rich Low_complexity Low_complexity 3 53 0 214 284 161 0 chr6 33406405 33406486 -155873068 + L2 LINE L2 2668 2761 -553 201 178 89 0 chr6 33406534 33406579 -155872975 + L2 LINE L2 3265 3313 0 2096 216 79 54 chr6 33406703 33406776 -155872778 - MLT1E3 LTR MaLR 0 624 554 1389 231 14 10 chr6 33406776 33407071 -155872483 - AluJo SINE Alu -16 296 1 2096 216 79 54 chr6 33407071 33407604 -155871950 - MLT1E3 LTR MaLR -70 554 3 1622 209 0 3 chr6 33407766 33408063 -155871491 + AluJb SINE Alu 1 296 -16 1993 234 45 27 chr6 33408127 33408579 -155870975 - MLT1F1 LTR MaLR 0 567 102 2179 121 55 25 chr6 33408579 33408943 -155870611 - THE1C LTR MaLR 0 375 1 1993 234 45 27 chr6 33408943 33409042 -155870512 - MLT1F1 LTR MaLR -465 102 6 6476 94 5 4 chr6 33409127 33410672 -155868882 - L1PA10 LINE L1 -5 6163 4619 469 77 0 0 chr6 33411026 33411091 -155868463 + MER41B LTR ERV1 483 547 -88 219 69 0 0 chr6 33411988 33412017 -155867537 + (TA)n Simple_repeat Simple_repeat 2 30 0 434 265 144 44 chr6 33412098 33412396 -155867158 - L1ME3A LINE L1 -298 5872 5545 343 191 39 39 chr6 33412622 33412800 -155866754 + GA-rich Low_complexity Low_complexity 3 180 0 400 208 0 0 chr6 33412940 33413017 -155866537 - MLT1F1 LTR MaLR 0 567 491 850 309 40 16 chr6 33413139 33413517 -155866037 - LTR16B LTR ERVL -5 459 73 347 330 55 42 chr6 33413535 33414011 -155865543 - HERV16 LTR ERVL -504 5260 4779 539 306 93 44 chr6 33414621 33415006 -155864548 - HERV16 LTR ERVL -900 4393 3693 * 3184 338 41 29 chr6 33415005 33417473 -155862081 - HERV16 LTR ERVL -1900 3096 858 770 327 65 18 chr6 33418164 33418607 -155860947 - LTR16B LTR ERVL 0 464 1 2574 270 154 29 chr6 33418607 33419451 -155860103 - L2 LINE L2 -1658 1656 919 1933 227 94 26 chr6 33419451 33420037 -155859517 - MLT1E2 LTR MaLR 0 626 1 2574 270 154 29 chr6 33420037 33420648 -155858906 - L2 LINE L2 -2395 919 18 1956 158 80 3 chr6 33421866 33422215 -155857339 - Tigger1 DNA MER2_type 0 2418 2043 238 328 0 0 chr6 33425453 33425517 -155854037 - MER82 DNA MER2_type -91 562 499 186 103 0 0 chr6 33426925 33426954 -155852600 + (CA)n Simple_repeat Simple_repeat 2 30 0 306 246 36 9 chr6 33426998 33427011 -155852543 - L1MA4A LINE L1 -1 6302 6290 691 251 5 15 chr6 33427011 33427206 -155852348 - L1PB4 LINE L1 0 6156 5964 843 224 228 3 chr6 33427428 33427778 -155851776 + Charlie1 DNA MER1_type 33 1767 -994 1919 196 54 59 chr6 33427786 33428530 -155851024 - L1MC/D LINE L1 -596 5763 5016 590 182 0 0 chr6 33428559 33428658 -155850896 - FLAM_A SINE Alu -43 99 1 626 236 5 48 chr6 33428664 33428872 -155850682 - L1MC/D LINE L1 -1113 5033 4835 4490 229 122 44 chr6 33428873 33429494 -155850060 - L1M4 LINE L1 -816 5330 4759 2176 74 51 0 chr6 33429494 33429790 -155849764 - AluY SINE Alu 0 311 1 4490 229 122 44 chr6 33429790 33431106 -155848448 - L1M4 LINE L1 -1387 4759 3242 1709 272 30 45 chr6 33431112 33431686 -155847868 + MER21B-int LTR ERV1 2880 3444 -747 1910 241 21 24 chr6 33431825 33432336 -155847218 + MER21B-int LTR ERV1 3632 4141 -50 546 261 78 14 chr6 33432435 33432577 -155846977 + MER21B LTR ERV1 19 169 -694 1710 205 71 15 chr6 33432596 33433005 -155846549 - MSTB1 LTR MaLR 0 432 1 2108 239 27 34 chr6 33433021 33433582 -155845972 - MSTB1-int LTR MaLR -17 1634 1078 970 218 0 0 chr6 33433592 33433785 -155845769 - MSTB1-int LTR MaLR -1172 479 287 1001 148 0 0 chr6 33433786 33433941 -155845613 - MSTA LTR MaLR -273 155 1 6833 82 54 4 chr6 33435611 33436587 -155842967 + SVA Other Other 146 1170 -216 204 40 0 0 chr6 33436587 33436612 -155842942 + (A)n Simple_repeat Simple_repeat 1 25 0 2026 139 0 0 chr6 33437271 33437580 -155841974 - AluSg SINE Alu -1 309 1 1930 116 4 0 chr6 33437727 33438003 -155841551 + AluSq SINE Alu 1 277 -36 210 37 0 0 chr6 33438004 33438031 -155841523 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 513 156 21 0 chr6 33438317 33438413 -155841141 - AluSp/q SINE Alu -15 298 201 1767 336 48 34 chr6 33438499 33439547 -155840007 - HERV16 LTR ERVL -1900 3096 2035 381 193 0 0 chr6 33439937 33439994 -155839560 + MER30 DNA MER1_type 172 228 -2 190 330 70 17 chr6 33439999 33440114 -155839440 + L2 LINE L2 3191 3311 -2 22 0 0 0 chr6 33444068 33444090 -155835464 + GC_rich Low_complexity Low_complexity 1 22 0 195 100 0 0 chr6 33444728 33444758 -155834796 + (T)n Simple_repeat Simple_repeat 1 30 0 206 260 40 0 chr6 33445588 33445638 -155833916 + L2 LINE L2 2710 2761 -553 184 265 0 0 chr6 33445686 33445735 -155833819 + L2 LINE L2 3265 3313 0 1810 224 88 47 chr6 33445871 33446132 -155833422 - MLT1E3 LTR MaLR -52 572 323 2087 96 0 46 chr6 33446132 33446455 -155833099 - AluYa5 SINE Alu -3 308 1 1810 224 88 47 chr6 33446455 33446741 -155832813 - MLT1E3 LTR MaLR -301 323 3 1301 219 25 0 chr6 33446905 33447184 -155832370 + AluJb SINE Alu 2 287 -25 2197 215 43 27 chr6 33447257 33447710 -155831844 - MLT1F1 LTR MaLR 0 567 102 2346 133 5 24 chr6 33447710 33448092 -155831462 - THE1C LTR MaLR 0 375 1 2197 215 43 27 chr6 33448092 33448191 -155831363 - MLT1F1 LTR MaLR -465 102 6 6436 88 30 17 chr6 33448297 33449295 -155830259 - L1PA10 LINE L1 -5 6163 5164 3583 131 0 4 chr6 33450140 33450652 -155828902 + MER9 LTR ERVK 2 511 0 369 0 0 0 chr6 33450718 33450759 -155828795 + (TA)n Simple_repeat Simple_repeat 2 42 0 281 298 152 42 chr6 33450779 33451161 -155828393 - L1ME3A LINE L1 -219 5951 5528 263 204 46 9 chr6 33451394 33451502 -155828052 + GA-rich Low_complexity Low_complexity 3 114 0 281 301 0 29 chr6 33451515 33451574 -155827980 + GA-rich Low_complexity Low_complexity 1 57 -43 2173 109 0 3 chr6 33451574 33451876 -155827678 + AluY SINE Alu 1 301 -10 281 301 0 29 chr6 33451876 33451919 -155827635 + GA-rich Low_complexity Low_complexity 57 100 0 393 130 32 2 chr6 33452029 33452101 -155827453 - MLT1F LTR MaLR -3 539 476 646 311 57 18 chr6 33452220 33452603 -155826951 - LTR16B LTR ERVL -5 459 62 1194 366 41 23 chr6 33452611 33453707 -155825847 - ERVL LTR ERVL -504 5260 4145 581 328 90 3 chr6 33453819 33454130 -155825424 - ERVL LTR ERVL -2240 3524 3187 3027 315 36 42 chr6 33454165 33454429 -155825125 - ERVL LTR ERVL -1900 3096 2832 2078 116 3 0 chr6 33454429 33454722 -155824832 - AluSp SINE Alu -19 294 1 3027 315 36 42 chr6 33454722 33455896 -155823658 - ERVL LTR ERVL -2164 2832 1666 267 328 57 24 chr6 33455986 33456233 -155823321 - ERVL LTR ERVL -4098 1556 1302 581 339 41 22 chr6 33456258 33456577 -155822977 - ERVL LTR ERVL -3819 1177 853 295 373 66 29 chr6 33456712 33457256 -155822298 - ERVL LTR ERVL -4430 566 3 531 292 65 19 chr6 33457258 33457518 -155822036 - LTR16B LTR ERVL 0 464 193 1995 232 47 123 chr6 33457695 33458711 -155820843 - L2 LINE L2 -1657 1657 719 1852 245 87 19 chr6 33458742 33459318 -155820236 - MLT1E2 LTR MaLR -11 615 1 1609 276 104 8 chr6 33459320 33459942 -155819612 - L2 LINE L2 -2615 699 18 1981 152 83 3 chr6 33461128 33461476 -155818078 - Tigger1 DNA MER2_type 0 2418 2043 188 367 0 51 chr6 33461507 33461586 -155817968 + MIR SINE MIR 23 97 -165 347 315 163 0 chr6 33462917 33463101 -155816453 + MIR SINE MIR 22 235 -27 2182 99 0 3 chr6 33463132 33463435 -155816119 - AluSq SINE Alu -11 302 1 1058 158 21 16 chr6 33466042 33466232 -155813322 - MLT1B LTR MaLR 0 390 200 227 182 0 109 chr6 33466223 33466278 -155813276 - MLT1B LTR MaLR -341 49 1 * 6135 171 24 39 chr6 33466713 33466878 -155812676 - L1MA4A LINE L1 0 6303 6137 2281 76 0 35 chr6 33466878 33467193 -155812361 - AluY SINE Alu -7 304 1 6135 171 24 39 chr6 33467193 33468865 -155810689 - L1MA4A LINE L1 -166 6137 4441 792 197 0 0 chr6 33468865 33468997 -155810557 - FLAM_C SINE Alu 0 133 2 6135 171 24 39 chr6 33468997 33469253 -155810301 - L1MA4A LINE L1 -1862 4441 4252 2417 58 0 19 chr6 33469253 33469563 -155809991 - AluY SINE Alu -7 304 1 6135 171 24 39 chr6 33469563 33469841 -155809713 - L1MA4A LINE L1 -2051 4252 3971 25 0 0 0 chr6 33469857 33469882 -155809672 + AT_rich Low_complexity Low_complexity 1 25 0 1883 267 92 11 chr6 33469910 33470607 -155808947 - L1ME2 LINE L1 -1 6163 5411 242 259 0 0 chr6 33471127 33471181 -155808373 + Tigger6 DNA MER2_type 2 55 -1028 207 0 0 0 chr6 33471271 33471294 -155808260 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1281 236 0 4 chr6 33471297 33471577 -155807977 - AluJb SINE Alu -33 279 1 486 284 109 35 chr6 33471581 33471873 -155807681 - L1ME3 LINE L1 -233 5937 5624 364 241 30 91 chr6 33471999 33472231 -155807323 + L1MC4a LINE L1 5779 5996 -1812 390 295 131 11 chr6 33473928 33474111 -155805443 + MIR SINE MIR 19 223 -39 24 77 0 0 chr6 33474111 33474163 -155805391 + AT_rich Low_complexity Low_complexity 1 52 0 421 251 30 99 chr6 33475303 33475566 -155803988 - HAL1 LINE L1 0 2507 2263 38 22 0 0 chr6 33475606 33475651 -155803903 + AT_rich Low_complexity Low_complexity 1 45 0 552 277 72 18 chr6 33476279 33476557 -155802997 - HAL1 LINE L1 -415 2092 1800 1988 210 51 9 chr6 33476815 33477282 -155802272 - L1MB2 LINE L1 0 6171 5685 216 91 18 55 chr6 33479199 33479254 -155800300 + (CCCG)n Simple_repeat Simple_repeat 1 53 0 30 59 0 0 chr6 33479261 33479312 -155800242 + GC_rich Low_complexity Low_complexity 1 51 0 207 180 31 87 chr6 33479317 33479478 -155800076 + (CCCGG)n Simple_repeat Simple_repeat 5 156 0 25 95 0 0 chr6 33479578 33479652 -155799902 + GC_rich Low_complexity Low_complexity 1 74 0 52 50 0 0 chr6 33479701 33479781 -155799773 + GC_rich Low_complexity Low_complexity 1 80 0 360 263 160 62 chr6 33480091 33480615 -155798939 + L1M4 LINE L1 707 1377 -5472 372 22 0 0 chr6 33482826 33482871 -155796683 + (A)n Simple_repeat Simple_repeat 1 45 0 535 261 69 57 chr6 33482871 33483277 -155796277 - L1MC5 LINE L1 -460 7501 7091 246 279 74 42 chr6 33483308 33483523 -155796031 + L1M4 LINE L1 4424 4645 -2203 720 258 0 6 chr6 33483556 33483734 -155795820 - MLT1D LTR MaLR -328 177 1 2019 179 46 73 chr6 33483874 33484437 -155795117 - LTR10A LTR ERV1 -61 548 1 447 331 77 23 chr6 33484451 33484803 -155794751 + L1M4c LINE L1 1398 1834 -4612 246 331 75 38 chr6 33484905 33485065 -155794489 + L2 LINE L2 3144 3309 -4 2138 87 13 0 chr6 33485226 33485524 -155794030 + AluSp SINE Alu 1 302 -11 224 231 62 31 chr6 33485525 33485590 -155793964 - MER5A DNA MER1_type -32 157 80 3719 226 69 75 chr6 33485592 33485882 -155793672 + L1M4 LINE L1 86 376 -6270 1877 176 0 0 chr6 33485882 33486194 -155793360 + AluJb SINE Alu 1 312 0 3719 226 69 75 chr6 33486194 33487728 -155791826 + L1M4 LINE L1 376 1950 -4696 203 161 0 0 chr6 33487752 33487783 -155791771 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 1792 211 19 24 chr6 33487824 33488250 -155791304 + L1MB5 LINE L1 5743 6166 -8 230 93 74 0 chr6 33489003 33489057 -155790497 + (TA)n Simple_repeat Simple_repeat 1 58 0 797 204 72 0 chr6 33489282 33489434 -155790120 - FAM SINE Alu -12 163 1 305 309 134 56 chr6 33489706 33489784 -155789770 - L1ME4a LINE L1 -141 5980 5910 1599 141 8 8 chr6 33489784 33490040 -155789514 - AluSx SINE Alu -22 290 35 305 309 134 56 chr6 33490040 33490281 -155789273 - L1ME4a LINE L1 -211 5910 5636 1454 169 47 7 chr6 33490291 33490569 -155788985 + AluJb SINE Alu 5 293 -19 1659 219 135 9 chr6 33490602 33490737 -155788817 + MLT2B3 LTR ERVL 78 195 -359 300 83 0 0 chr6 33490737 33490785 -155788769 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 1659 219 135 9 chr6 33490785 33491032 -155788522 + MLT2B3 LTR ERVL 195 520 -34 716 40 56 0 chr6 33491032 33491157 -155788397 + (TCTA)n Simple_repeat Simple_repeat 4 135 0 1659 219 135 9 chr6 33491157 33491194 -155788360 + MLT2B3 LTR ERVL 520 551 -3 480 302 94 38 chr6 33491194 33491772 -155787782 - L2 LINE L2 -132 3181 2569 1599 184 48 99 chr6 33491772 33491809 -155787745 - L1P5 LINE L1 -694 5457 5420 3001 182 43 19 chr6 33491809 33492480 -155787074 - L1MB4 LINE L1 -1 6179 5493 1599 184 48 99 chr6 33492480 33492717 -155786837 - L1P5 LINE L1 -731 5420 5173 2368 93 0 0 chr6 33492717 33493029 -155786525 - AluSx SINE Alu 0 312 1 1599 184 48 99 chr6 33493029 33493336 -155786218 - L1P5 LINE L1 -978 5173 4904 328 267 180 16 chr6 33494827 33494961 -155784593 + MIR SINE MIR 14 165 -59 490 210 179 31 chr6 33494967 33495129 -155784425 - MER20 DNA MER1_type -2 217 32 850 213 38 0 chr6 33495641 33495801 -155783753 + FRAM SINE Alu 1 164 -12 395 250 109 31 chr6 33495882 33495979 -155783575 - L1MEc LINE L1 -3829 2399 2311 213 39 0 0 chr6 33495979 33496005 -155783549 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 395 250 109 31 chr6 33496005 33496170 -155783384 - L1MEc LINE L1 -3917 2311 2145 1267 295 108 9 chr6 33496488 33497192 -155782362 + L2 LINE L2 2381 3147 -166 929 120 44 85 chr6 33497239 33497471 -155782083 + MER30B DNA MER1_type 1 230 0 215 330 70 17 chr6 33497474 33497589 -155781965 + L2 LINE L2 3191 3311 -2 2015 116 24 3 chr6 33498053 33498346 -155781208 + AluSc SINE Alu 1 299 -10 22 0 0 0 chr6 33501789 33501811 -155777743 + GC_rich Low_complexity Low_complexity 1 22 0 209 283 206 22 chr6 33503176 33503356 -155776198 + L2 LINE L2 2553 2765 -549 1872 239 61 48 chr6 33503584 33503663 -155775891 - MLT1E3 LTR MaLR 0 624 548 1251 197 45 35 chr6 33503663 33503952 -155775602 - AluJo SINE Alu -20 292 1 1872 239 61 48 chr6 33503952 33504475 -155775079 - MLT1E3 LTR MaLR -76 548 14 1562 171 14 11 chr6 33504648 33504934 -155774620 + AluJb SINE Alu 1 287 -25 1929 216 42 20 chr6 33505006 33505459 -155774095 - MLT1F1 LTR MaLR 0 567 105 1409 109 5 19 chr6 33505460 33505671 -155773883 - THE1C LTR MaLR 0 375 168 1814 96 12 0 chr6 33505671 33505922 -155773632 + L1PA10 LINE L1 5779 6032 -136 632 161 31 62 chr6 33505940 33506070 -155773484 - THE1C LTR MaLR -249 126 1 401 262 39 0 chr6 33506070 33506169 -155773385 - MLT1F1 LTR MaLR -459 108 6 6332 94 5 1 chr6 33506226 33506252 -155773302 - L1PA10 LINE L1 0 6168 6144 252 0 0 0 chr6 33506252 33506280 -155773274 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 6332 94 5 1 chr6 33506280 33507804 -155771750 - L1PA10 LINE L1 -24 6144 4619 292 67 100 17 chr6 33508158 33508218 -155771336 + MER41B LTR ERV1 483 547 -88 520 108 0 0 chr6 33509190 33509273 -155770281 - L1 LINE L1 -1302 4844 4762 405 287 140 27 chr6 33509420 33509713 -155769841 - L1ME3A LINE L1 -298 5872 5547 415 0 0 0 chr6 33509713 33509759 -155769795 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 1335 113 6 0 chr6 33509759 33509936 -155769618 - AluSx SINE Alu -28 284 107 1062 53 8 0 chr6 33509937 33510069 -155769485 + LTR3b LTR ERVK 3 135 -365 504 164 135 10 chr6 33510068 33510172 -155769382 + LTR3b LTR ERVK 316 432 -5 * 904 106 0 0 chr6 33510181 33510294 -155769260 - AluSx SINE Alu -200 113 1 289 214 28 39 chr6 33510569 33510747 -155768807 + GA-rich Low_complexity Low_complexity 1 176 0 381 164 14 0 chr6 33510891 33510964 -155768590 - MLT1F1 LTR MaLR -3 564 491 697 304 49 23 chr6 33511082 33511470 -155768084 - LTR16B LTR ERVL -5 459 62 916 319 65 42 chr6 33511784 33512668 -155766886 - HERV16 LTR ERVL -808 4956 3710 1478 346 33 32 chr6 33512779 33513846 -155765708 - HERV16 LTR ERVL -1900 3096 2310 359 290 137 16 chr6 33517197 33517380 -155762174 + MIR SINE MIR 19 223 -39 25 65 0 0 chr6 33517380 33517426 -155762128 + AT_rich Low_complexity Low_complexity 1 46 0 240 170 0 0 chr6 33518565 33518618 -155760936 + (CA)n Simple_repeat Simple_repeat 2 54 0 584 274 9 50 chr6 33518672 33518891 -155760663 - L1PB4 LINE L1 -1 6155 5946 898 210 188 4 chr6 33519096 33519435 -155760119 + Charlie1 DNA MER1_type 38 1743 -1018 2046 205 68 26 chr6 33519461 33520193 -155759361 - L1MC/D LINE L1 -594 5765 4992 600 184 0 0 chr6 33520204 33520302 -155759252 - FLAM_A SINE Alu -44 98 1 589 261 11 6 chr6 33520329 33520505 -155759049 - L1MC/D LINE L1 -1128 5018 4842 * 4855 241 121 26 chr6 33520486 33522403 -155757151 - L1M4 LINE L1 -798 5348 3251 3679 259 53 42 chr6 33522404 33522750 -155756804 + MER21B-int LTR ERV1 2868 3209 -982 2284 109 3 0 chr6 33522750 33523052 -155756502 + AluSx SINE Alu 1 303 -9 3679 259 53 42 chr6 33523052 33523957 -155755597 + MER21B-int LTR ERV1 3209 4133 -58 497 281 75 12 chr6 33524063 33524223 -155755331 + MER21B LTR ERV1 19 188 -675 1841 206 66 7 chr6 33524223 33524631 -155754923 - MSTB1 LTR MaLR 0 432 1 2233 242 33 28 chr6 33524631 33525202 -155754352 - MSTB1-int LTR MaLR 0 1651 1078 2817 168 8 0 chr6 33525211 33525686 -155753868 - MSTB1-int LTR MaLR -1172 479 1 479 113 0 0 chr6 33525686 33525757 -155753797 - MSTA LTR MaLR 0 428 358 28 0 0 0 chr6 33526609 33526637 -155752917 + AT_rich Low_complexity Low_complexity 1 28 0 2096 164 36 8 chr6 33526666 33527026 -155752528 - MSTA LTR MaLR -58 370 1 228 234 0 0 chr6 33527790 33527837 -155751717 - L1MA10 LINE L1 -103 6231 6185 1694 168 0 32 chr6 33529895 33530210 -155749344 - AluJo SINE Alu -7 305 1 2507 42 3 22 chr6 33530280 33530591 -155748963 - AluY SINE Alu -6 305 1 290 312 43 22 chr6 33530860 33530998 -155748556 + L2 LINE L2 2625 2765 -549 397 272 16 8 chr6 33531006 33531131 -155748423 + L2 LINE L2 3188 3313 0 2218 241 68 19 chr6 33531290 33531878 -155747676 - MLT1E3 LTR MaLR -2 622 6 22 0 0 0 chr6 33531981 33532003 -155747551 + AT_rich Low_complexity Low_complexity 1 22 0 2140 229 51 22 chr6 33532081 33532627 -155746927 - MLT1F1 LTR MaLR 0 567 6 2254 127 0 6 chr6 33533733 33534227 -155745327 + AluSq SINE Alu 1 313 0 597 64 0 0 chr6 33534228 33534306 -155745248 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 330 331 116 3 chr6 33534574 33534858 -155744696 - L1ME3A LINE L1 -301 5869 5554 204 125 0 0 chr6 33535113 33535145 -155744409 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 361 218 0 0 chr6 33535285 33535363 -155744191 - MLT1F1 LTR MaLR -2 565 488 864 304 39 13 chr6 33535475 33535857 -155743697 - LTR16B LTR ERVL -4 460 69 350 354 42 29 chr6 33536113 33536568 -155742986 - ERVL LTR ERVL -786 4978 4518 204 157 0 39 chr6 33536880 33536931 -155742623 + C-rich Low_complexity Low_complexity 5 53 0 1855 246 88 21 chr6 33539277 33539802 -155739752 - MLT1E3 LTR MaLR -51 573 14 1579 183 3 14 chr6 33539975 33540289 -155739265 + AluJb SINE Alu 1 311 0 1964 243 47 27 chr6 33540341 33540792 -155738762 - MLT1F1 LTR MaLR 0 567 102 2182 152 5 24 chr6 33540792 33541174 -155738380 - THE1C LTR MaLR 0 375 1 1964 243 47 27 chr6 33541174 33541273 -155738281 - MLT1F1 LTR MaLR -465 102 6 6068 102 16 5 chr6 33541351 33542883 -155736671 - L1PA10 LINE L1 -2 6166 4624 342 93 19 0 chr6 33543250 33543304 -155736250 + MER41B LTR ERV1 493 547 -88 42179 56 14 1 chr6 33543992 33550039 -155729515 - L1PA6 LINE L1 -6 6148 22 1670 228 70 50 chr6 33550209 33550286 -155729268 - MLT1E3 LTR MaLR 0 614 540 1224 227 38 34 chr6 33550286 33550577 -155728977 - AluJo SINE Alu -20 292 1 1670 228 70 50 chr6 33550577 33551111 -155728443 - MLT1E3 LTR MaLR -74 540 3 1329 216 3 21 chr6 33551275 33551566 -155727988 + AluJb SINE Alu 2 287 -25 1922 221 99 27 chr6 33551639 33552061 -155727493 - MLT1F1 LTR MaLR 0 567 100 2050 142 34 47 chr6 33552061 33552441 -155727113 - THE1C LTR MaLR 0 375 1 1922 221 99 27 chr6 33552441 33552534 -155727020 - MLT1F1 LTR MaLR -467 100 15 6550 90 30 0 chr6 33552618 33554132 -155725422 - L1PA10 LINE L1 0 6168 4619 397 157 0 0 chr6 33554475 33554545 -155725009 + MER41B LTR ERV1 480 549 -86 527 297 143 23 chr6 33555437 33555828 -155723726 - L1ME3A LINE L1 -205 5965 5528 2271 79 10 14 chr6 33555914 33556206 -155723348 - AluY SINE Alu -20 291 1 222 184 40 13 chr6 33556379 33556455 -155723099 + GA-rich Low_complexity Low_complexity 1 78 0 287 316 11 0 chr6 33556456 33556551 -155723003 + A-rich Low_complexity Low_complexity 2 97 0 451 162 0 0 chr6 33556661 33556735 -155722819 - MLT1F1 LTR MaLR -3 564 491 699 295 52 22 chr6 33556859 33557225 -155722329 - LTR16B LTR ERVL -26 438 62 644 375 56 26 chr6 33557246 33558317 -155721237 - MERVL LTR ERVL -280 5205 4103 2918 328 47 20 chr6 33558786 33560886 -155718668 - MERVL LTR ERVL -1900 3096 853 828 327 81 11 chr6 33561571 33562005 -155717549 - LTR16B LTR ERVL 0 464 1 1723 296 57 24 chr6 33562005 33562746 -155716808 - L2 LINE L2 -1658 1656 892 405 259 90 0 chr6 33562855 33563044 -155716510 - L2 LINE L2 -2411 903 698 1739 249 106 5 chr6 33563045 33563616 -155715938 - MLT1E2 LTR MaLR 0 626 1 1420 264 102 25 chr6 33563623 33564252 -155715302 - L2 LINE L2 -2620 694 18 1583 167 108 3 chr6 33565472 33565813 -155713741 - Tigger1 DNA MER2_type 0 2418 2042 2327 123 0 0 chr6 33568693 33568995 -155710559 - AluSx SINE Alu -10 302 1 949 329 30 16 chr6 33569109 33569537 -155710017 + LTR33 LTR ERVL 23 456 -65 612 211 0 8 chr6 33569654 33569777 -155709777 - FLAM_C SINE Alu -19 124 3 250 336 97 35 chr6 33572140 33572512 -155707042 - L2 LINE L2 -421 2893 2499 477 115 0 0 chr6 33573539 33573617 -155705937 + (CA)n Simple_repeat Simple_repeat 1 78 0 756 197 34 28 chr6 33574842 33575020 -155704534 - FRAM SINE Alu 0 176 1 2489 81 0 3 chr6 33575119 33575429 -155704125 + AluSq SINE Alu 5 313 0 2255 48 15 105 chr6 33575429 33575763 -155703791 + AluY SINE Alu 1 304 -7 451 238 0 86 chr6 33575958 33576109 -155703445 + L1ME1 LINE L1 6025 6162 -4 225 268 0 18 chr6 33576372 33576428 -155703126 + CT-rich Low_complexity Low_complexity 1 55 0 660 228 13 20 chr6 33578064 33578234 -155701320 + FRAM SINE Alu 1 169 0 668 223 29 11 chr6 33578301 33578476 -155701078 - MER5B DNA MER1_type 0 178 1 248 246 0 0 chr6 33578561 33578618 -155700936 - L1MB7 LINE L1 -17 6167 6111 287 269 13 0 chr6 33579265 33579343 -155700211 - L1MB7 LINE L1 -58 6126 6048 772 59 0 0 chr6 33579350 33579451 -155700103 - HY3 scRNA scRNA 0 101 1 188 35 35 0 chr6 33581163 33581192 -155698362 + (TCTCC)n Simple_repeat Simple_repeat 2 31 0 2247 123 3 0 chr6 33582365 33582674 -155696880 - AluY SINE Alu -1 310 1 1763 203 30 11 chr6 33582674 33582803 -155696751 - L1M3 LINE L1 -568 5615 5490 297 0 0 0 chr6 33582803 33582836 -155696718 + (TG)n Simple_repeat Simple_repeat 2 34 0 1763 203 30 11 chr6 33582836 33583413 -155696141 - L1M3 LINE L1 -693 5490 4899 478 282 141 0 chr6 33588095 33588265 -155691289 + MIR SINE MIR 30 223 -39 863 310 125 14 chr6 33589479 33590118 -155689436 - HAL1 LINE L1 0 2507 1798 181 273 78 0 chr6 33590166 33590243 -155689311 - MER5A DNA MER1_type -85 104 22 1754 202 104 13 chr6 33590371 33590842 -155688712 - L1MB2 LINE L1 -1 6170 5657 629 235 55 74 chr6 33592446 33592825 -155686729 - L1MC5 LINE L1 -509 7452 7081 526 243 77 12 chr6 33592834 33593032 -155686522 + L1ME3A LINE L1 5586 5791 -379 628 264 45 27 chr6 33593106 33593326 -155686228 + L1ME3A LINE L1 5932 6155 -15 2318 224 31 23 chr6 33593775 33594428 -155685126 + L1M4c LINE L1 997 1654 -4730 365 314 8 34 chr6 33594434 33594552 -155685002 - L1MC4 LINE L1 -1339 6703 6589 240 86 0 0 chr6 33594606 33594641 -155684913 + (TG)n Simple_repeat Simple_repeat 1 35 0 1854 197 23 32 chr6 33594746 33595182 -155684372 + L1MB5 LINE L1 5743 6174 0 26 50 0 0 chr6 33595923 33595963 -155683591 + AT_rich Low_complexity Low_complexity 1 40 0 998 161 0 0 chr6 33596195 33596338 -155683216 - FAM SINE Alu -29 156 14 2058 158 0 3 chr6 33596607 33596917 -155682637 - AluSx SINE Alu -3 309 1 304 315 35 42 chr6 33596932 33597075 -155682479 - L1ME4a LINE L1 -165 5956 5815 2051 114 3 10 chr6 33597076 33597366 -155682188 + AluSx SINE Alu 1 288 -24 1712 193 0 13 chr6 33597554 33597854 -155681700 + AluJb SINE Alu 1 296 -16 246 297 126 0 chr6 33597948 33598059 -155681495 - L2 LINE L2 0 3313 3189 2339 177 102 14 chr6 33598067 33598541 -155681013 + MLT2B3 LTR ERVL 1 523 -31 599 26 0 13 chr6 33598541 33598619 -155680935 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2339 177 102 14 chr6 33598619 33598646 -155680908 + MLT2B3 LTR ERVL 523 546 -8 452 293 104 39 chr6 33598646 33599223 -155680331 - L2 LINE L2 -135 3178 2564 1621 186 30 19 chr6 33599223 33599265 -155680289 - L1M4 LINE L1 -721 5457 5417 3136 181 41 1 chr6 33599265 33599922 -155679632 - L1MB3 LINE L1 -8 6175 5493 1621 186 30 19 chr6 33599922 33600445 -155679109 - L1M4 LINE L1 -761 5417 4903 26 50 0 0 chr6 33600584 33600624 -155678930 + AT_rich Low_complexity Low_complexity 1 40 0 849 203 28 46 chr6 33601624 33601841 -155677713 - MER20 DNA MER1_type 0 219 7 604 330 94 27 chr6 33602260 33602663 -155676891 + L1MC5 LINE L1 7354 7783 -178 216 0 0 0 chr6 33603251 33603275 -155676279 + (CA)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 33603312 33603353 -155676201 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr6 33606658 33606682 -155672872 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 1284 75 0 0 chr6 33606928 33607101 -155672453 + (TTC)n Simple_repeat Simple_repeat 2 174 0 198 171 0 0 chr6 33607101 33607142 -155672412 + CT-rich Low_complexity Low_complexity 2 42 0 2526 46 30 0 chr6 33607277 33607579 -155671975 - AluY SINE Alu 0 311 1 223 328 30 0 chr6 33608283 33608350 -155671204 + L2 LINE L2 2686 2754 -560 326 129 32 0 chr6 33608590 33608652 -155670902 - MLT1E3 LTR MaLR 0 624 561 1121 223 19 52 chr6 33608652 33608961 -155670593 - AluJo SINE Alu -3 309 11 1923 236 82 17 chr6 33608971 33609506 -155670048 - MLT1E3 LTR MaLR -52 572 3 324 48 0 0 chr6 33609517 33609559 -155669995 + (T)n Simple_repeat Simple_repeat 1 42 0 6617 74 26 57 chr6 33609560 33610910 -155668644 - SVA Other Other -520 1385 -5 25 51 0 0 chr6 33610910 33610949 -155668605 + GC_rich Low_complexity Low_complexity 1 39 0 6617 74 26 57 chr6 33610949 33611901 -155667653 - SVA Other Other -1910 4294967291 57 1220 0 0 53 chr6 33611901 33612091 -155667463 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6617 74 26 57 chr6 33612091 33612128 -155667426 - SVA Other Other -1847 58 21 23 0 0 0 chr6 33612266 33612289 -155667265 + AT_rich Low_complexity Low_complexity 1 23 0 1479 186 0 11 chr6 33612300 33612579 -155666975 + AluJb SINE Alu 9 284 -28 2200 208 80 15 chr6 33612661 33613189 -155666365 - MLT1F1 LTR MaLR 0 567 6 266 116 23 0 chr6 33614226 33614269 -155665285 + MADE1 DNA Mariner 35 78 -2 456 167 0 0 chr6 33614619 33614697 -155664857 - MLT1F LTR MaLR -2 540 463 623 332 80 8 chr6 33614809 33615183 -155664371 - LTR16B LTR ERVL -2 462 62 1588 325 46 35 chr6 33615191 33616410 -155663144 - ERVL LTR ERVL -504 5260 3688 757 296 42 0 chr6 33616408 33616715 -155662839 - ERVL LTR ERVL -2173 3481 3162 * 3137 314 62 24 chr6 33616804 33618835 -155660719 - ERVL LTR ERVL -1953 3043 873 26 30 0 0 chr6 33619710 33619743 -155659811 + AT_rich Low_complexity Low_complexity 1 33 0 983 234 109 13 chr6 33620556 33620898 -155658656 - LTR43 LTR ERV1 -53 470 177 2061 165 41 11 chr6 33622369 33622411 -155657143 - MLT2C1 LTR ERVL 0 397 358 393 22 0 0 chr6 33622411 33622457 -155657097 + (TG)n Simple_repeat Simple_repeat 2 47 0 2061 165 41 11 chr6 33622457 33622777 -155656777 - MLT2C1 LTR ERVL -39 358 24 231 212 106 59 chr6 33625750 33625835 -155653719 + L2 LINE L2 3183 3271 -1 552 68 0 0 chr6 33625923 33625996 -155653558 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 1892 90 0 50 chr6 33626102 33626380 -155653174 - AluSg SINE Alu -13 297 34 201 74 0 0 chr6 33627672 33627699 -155651855 + (TG)n Simple_repeat Simple_repeat 2 28 0 742 303 24 46 chr6 33627868 33628238 -155651316 + L1MC3 LINE L1 1445 1806 -4590 2310 76 3 13 chr6 33628260 33628576 -155650978 - AluSp SINE Alu 0 313 1 1103 220 63 16 chr6 33628591 33628955 -155650599 + L1MC3 LINE L1 2667 3047 -3168 1887 229 62 23 chr6 33628956 33629163 -155650391 + L1MC3 LINE L1 4799 4996 -1219 1898 120 4 0 chr6 33629163 33629438 -155650116 + AluSx SINE Alu 36 311 -1 1887 229 62 23 chr6 33629438 33629909 -155649645 + L1MC3 LINE L1 4996 5113 -1102 1501 180 58 0 chr6 33629909 33630021 -155649533 + AluJb SINE Alu 5 109 -203 252 0 0 0 chr6 33630021 33630049 -155649505 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1501 180 58 0 chr6 33630049 33630214 -155649340 + AluJb SINE Alu 109 298 -14 1887 229 62 23 chr6 33630214 33630589 -155648965 + L1MC3 LINE L1 5113 5472 -743 1926 132 0 23 chr6 33630594 33630897 -155648657 + AluSx SINE Alu 1 296 -16 513 143 9 76 chr6 33630920 33631025 -155648529 + AluJo/FLAM SINE Alu 35 132 -180 2189 101 3 0 chr6 33631027 33631325 -155648229 + AluSp SINE Alu 1 299 -14 189 74 0 0 chr6 33631325 33631352 -155648202 + (TA)n Simple_repeat Simple_repeat 2 28 0 857 265 71 19 chr6 33631352 33631620 -155647934 + L1ME1 LINE L1 5822 6103 -63 1998 95 67 0 chr6 33631620 33631904 -155647650 + AluSq SINE Alu 1 303 -10 30 66 0 13 chr6 33632200 33632238 -155647316 + AT_rich Low_complexity Low_complexity 1 38 -37 2196 83 7 0 chr6 33632238 33632526 -155647028 + AluSp SINE Alu 1 290 -23 30 66 0 13 chr6 33632526 33632563 -155646991 + AT_rich Low_complexity Low_complexity 38 75 0 2357 170 49 0 chr6 33632667 33633073 -155646481 - MSTB LTR MaLR 0 426 1 620 340 74 31 chr6 33633175 33634102 -155645452 + L1PBb LINE L1 273 1373 -5836 2432 65 0 10 chr6 33634127 33634435 -155645119 + AluSp SINE Alu 1 305 -8 1285 270 52 23 chr6 33634535 33635339 -155644215 + L1PBb LINE L1 1361 2036 -5173 2646 205 17 42 chr6 33635412 33635652 -155643902 + L1PBb LINE L1 2127 2371 -4837 2430 63 0 0 chr6 33635652 33635954 -155643600 + AluY SINE Alu 1 302 -9 2646 205 17 42 chr6 33635954 33636458 -155643096 + L1PBb LINE L1 2371 2853 -4355 2288 74 0 13 chr6 33636458 33636767 -155642787 + AluY SINE Alu 1 305 -6 1426 170 8 11 chr6 33636768 33637033 -155642521 + LTR2B LTR ERV1 227 490 0 533 63 0 0 chr6 33637035 33637114 -155642440 + AluSp/q SINE Alu 235 313 0 2249 107 0 0 chr6 33637131 33637441 -155642113 + AluSg SINE Alu 1 310 0 2065 116 10 3 chr6 33637487 33637798 -155641756 + AluSq SINE Alu 1 313 0 2101 122 3 0 chr6 33638017 33638320 -155641234 + AluSx SINE Alu 1 304 -8 2105 164 14 0 chr6 33638332 33638679 -155640875 - L1PB1 LINE L1 0 6151 5800 318 303 47 51 chr6 33638735 33638989 -155640565 + L1M4 LINE L1 4579 4831 -1315 2065 86 7 17 chr6 33639073 33639364 -155640190 + AluSp SINE Alu 1 288 -25 2233 56 0 3 chr6 33639364 33639649 -155639905 + AluY SINE Alu 1 284 -27 1990 60 45 0 chr6 33639668 33639968 -155639586 + AluY SINE Alu 1 312 0 1462 86 0 5 chr6 33640136 33640334 -155639220 - AluSg/x SINE Alu -32 280 84 1733 117 4 0 chr6 33640687 33640934 -155638620 - AluSp SINE Alu -2 311 64 1348 197 32 81 chr6 33640946 33641362 -155638192 + MSTB1 LTR MaLR 51 432 0 964 187 29 85 chr6 33641379 33641485 -155638069 + L1MC3 LINE L1 7488 7598 -187 1872 161 0 0 chr6 33641485 33641777 -155637777 + AluSx SINE Alu 1 292 -20 964 187 29 85 chr6 33641777 33641875 -155637679 + L1MC3 LINE L1 7598 7670 -115 2074 102 10 0 chr6 33641875 33642168 -155637386 + AluSx SINE Alu 1 296 -16 964 187 29 85 chr6 33642168 33642278 -155637276 + L1MC3 LINE L1 7670 7785 0 21 0 0 0 chr6 33642726 33642747 -155636807 + AT_rich Low_complexity Low_complexity 1 21 0 2059 200 82 14 chr6 33642749 33643250 -155636304 + L1MC3 LINE L1 7227 7761 -24 270 0 0 0 chr6 33643250 33643280 -155636274 + (ATTTG)n Simple_repeat Simple_repeat 2 31 0 2139 95 3 0 chr6 33643280 33643564 -155635990 - AluSp SINE Alu -28 285 1 1148 223 116 67 chr6 33644479 33644770 -155634784 - MLT1E3 LTR MaLR -234 390 76 1868 154 42 121 chr6 33644770 33645224 -155634330 + MER47B DNA MER2_type 1 418 0 1148 223 116 67 chr6 33645224 33645304 -155634250 - MLT1E3 LTR MaLR -548 76 1 1731 263 93 78 chr6 33645358 33646156 -155633398 - HERVL40 LTR ERVL -4306 1224 415 2181 111 0 3 chr6 33646270 33646577 -155632977 + AluSx SINE Alu 1 306 -6 2338 85 3 0 chr6 33646641 33646948 -155632606 + AluSp SINE Alu 5 312 -1 1157 53 20 0 chr6 33646993 33647145 -155632409 + L1PA4 LINE L1 6001 6155 0 1721 90 110 41 chr6 33647170 33647460 -155632094 + AluSg SINE Alu 1 310 0 1549 199 0 10 chr6 33647511 33647818 -155631736 - AluJo SINE Alu -8 304 1 1196 133 6 0 chr6 33647889 33648070 -155631484 - AluSx SINE Alu -130 182 1 2331 88 0 0 chr6 33648128 33648433 -155631121 - AluSq SINE Alu -6 307 3 25 31 0 0 chr6 33648658 33648690 -155630864 + GC_rich Low_complexity Low_complexity 1 32 0 2030 75 21 0 chr6 33649919 33650229 -155629325 - AluSp SINE Alu 0 316 1 214 151 57 0 chr6 33650326 33650379 -155629175 + GA-rich Low_complexity Low_complexity 5 60 0 2476 185 43 50 chr6 33650739 33650791 -155628763 - Tigger7 DNA MER2_type 0 2587 2536 1564 126 24 4 chr6 33650791 33651037 -155628517 - AluSx SINE Alu -11 301 51 2476 185 43 50 chr6 33651037 33651624 -155627930 - Tigger7 DNA MER2_type -51 2536 1946 1995 122 0 14 chr6 33651624 33651919 -155627635 - AluSx SINE Alu -21 291 1 2476 185 43 50 chr6 33651919 33652010 -155627544 - Tigger7 DNA MER2_type -641 1946 2 261 0 0 0 chr6 33652039 33652068 -155627486 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 310 133 25 chr6 33652068 33652215 -155627339 - MIR3 SINE MIR -10 198 32 183 229 229 17 chr6 33652279 33652397 -155627157 + MIR SINE MIR 86 228 -34 2399 78 0 0 chr6 33653273 33653581 -155625973 - AluSg SINE Alu -2 308 1 207 0 0 0 chr6 33653711 33653734 -155625820 + (CA)n Simple_repeat Simple_repeat 2 24 0 266 266 0 0 chr6 33654141 33654205 -155625349 - L2 LINE L2 -1 3271 3208 2260 95 0 7 chr6 33654662 33654968 -155624586 - AluSc SINE Alu -5 304 1 2018 199 79 49 chr6 33654975 33655166 -155624388 - L1ME2 LINE L1 -269 5895 5711 1625 129 8 8 chr6 33655166 33655422 -155624132 + AluJb SINE Alu 5 260 -52 1053 83 0 0 chr6 33655428 33655573 -155623981 + (GAA)n Simple_repeat Simple_repeat 2 146 0 2018 199 79 49 chr6 33655573 33655983 -155623571 - L1ME2 LINE L1 -457 5707 5269 1588 251 52 12 chr6 33655998 33656496 -155623058 - L1MC4a LINE L1 -585 7223 6706 1650 151 0 4 chr6 33656497 33656756 -155622798 - Tigger2 DNA MER2_type 0 2718 2461 3612 133 111 32 chr6 33656822 33657008 -155622546 - Tigger2 DNA MER2_type -1975 743 573 1899 116 20 17 chr6 33657008 33657309 -155622245 + AluSx SINE Alu 3 304 -8 3612 133 111 32 chr6 33657309 33657809 -155621745 - Tigger2 DNA MER2_type -2145 573 3 352 276 66 44 chr6 33657809 33658145 -155621409 - L1MCc LINE L1 -4889 1534 1383 290 263 16 97 chr6 33659182 33659319 -155620235 - L1MC4a LINE L1 -381 5740 5664 1746 123 49 3 chr6 33659319 33659441 -155620113 + AluSx SINE Alu 1 116 -196 233 29 0 29 chr6 33659441 33659476 -155620078 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1746 123 49 3 chr6 33659476 33659637 -155619917 + AluSx SINE Alu 116 297 -15 290 263 16 97 chr6 33659637 33659705 -155619849 - L1MC4a LINE L1 -457 5664 5592 21 0 0 0 chr6 33659705 33659726 -155619828 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 21 chr6 33659757 33659805 -155619749 + (TATAA)n Simple_repeat Simple_repeat 5 51 0 3410 142 11 9 chr6 33660253 33660796 -155618758 + LTR10A LTR ERV1 1 544 -65 390 269 141 39 chr6 33660807 33660963 -155618591 - L1ME3A LINE L1 -274 5896 5725 4475 116 8 0 chr6 33661314 33661944 -155617610 - MER41B LTR ERV1 0 635 1 2311 192 24 2 chr6 33661980 33662397 -155617157 + MSTB LTR MaLR 1 426 0 2032 172 9 0 chr6 33662953 33663302 -155616252 + MER47A DNA MER2_type 15 366 0 218 237 17 0 chr6 33663397 33663456 -155616098 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 6279 62 5 0 chr6 33664938 33665714 -155613840 - LTR17 LTR ERV1 0 780 1 5227 173 20 20 chr6 33666126 33666952 -155612602 - MER49 LTR ERV1 0 923 95 2013 152 0 0 chr6 33666952 33667254 -155612300 - AluSx SINE Alu -10 302 1 5227 173 20 20 chr6 33667254 33667341 -155612213 - MER49 LTR ERV1 -827 96 10 316 209 99 11 chr6 33667351 33667442 -155612112 - MARNA DNA Mariner -334 252 154 246 288 0 0 chr6 33669028 33669094 -155610460 + CT-rich Low_complexity Low_complexity 1 66 0 231 402 9 0 chr6 33670876 33670988 -155608566 - L3 LINE CR1 -477 1100 988 1104 235 35 53 chr6 33671105 33671424 -155608130 + MER93a LTR ERV1 90 402 0 363 306 35 21 chr6 33671579 33671723 -155607831 + MIR3 SINE MIR 31 176 -32 752 188 188 0 chr6 33672100 33672286 -155607268 + MIR SINE MIR 15 235 -27 253 279 0 0 chr6 33673820 33673888 -155605666 + MIR SINE MIR 85 152 -110 461 256 63 19 chr6 33673943 33674150 -155605404 + L2 LINE L2 528 743 -2571 3842 264 138 26 chr6 33674167 33675104 -155604450 + L2 LINE L2 971 1802 -1512 1721 176 90 9 chr6 33675104 33675450 -155604104 + MLT1A2 LTR MaLR 1 374 0 3842 264 138 26 chr6 33675450 33676137 -155603417 + L2 LINE L2 1802 2777 -537 1044 197 19 5 chr6 33676164 33676372 -155603182 - MER20 DNA MER1_type -8 211 1 2834 130 2 14 chr6 33676385 33676809 -155602745 - L1P3 LINE L1 -6042 419 1 1333 135 4 58 chr6 33676806 33677066 -155602488 - L1MA5 LINE L1 -241 6059 5814 * 3389 254 109 21 chr6 33677058 33678324 -155601230 - L1M4c LINE L1 -3940 2444 1040 2845 19 0 0 chr6 33678324 33678635 -155600919 - AluYa5 SINE Alu 0 311 1 3389 254 109 21 chr6 33678635 33678783 -155600771 - L1M4c LINE L1 -5344 1040 906 4091 240 66 12 chr6 33678797 33680144 -155599410 + L1M4 LINE L1 2220 3639 -2507 2341 103 3 0 chr6 33680745 33681045 -155598509 + AluSp SINE Alu 1 301 -12 1423 230 18 0 chr6 33682036 33682379 -155597175 + L1MB5 LINE L1 5817 6165 -9 2088 167 27 3 chr6 33683507 33683872 -155595682 - MLT1B LTR MaLR -16 374 1 499 270 0 0 chr6 33684057 33684168 -155595386 + MER81 DNA DNA 3 113 -1 2193 133 117 8 chr6 33686269 33686637 -155592917 - MSTA LTR MaLR 0 428 21 228 270 34 11 chr6 33787551 33787640 -155491914 + MIR SINE MIR 108 198 -64 395 345 53 8 chr6 33787982 33788228 -155491326 + MIR SINE MIR 2 258 -4 251 281 22 34 chr6 33789665 33789754 -155489800 - MIR SINE MIR -76 132 45 181 394 22 15 chr6 33790591 33790728 -155488826 + L2 LINE L2 1856 1993 -1321 202 358 80 18 chr6 33791102 33791328 -155488226 + L2 LINE L2 3032 3271 -1 277 316 32 39 chr6 33791689 33791844 -155487710 + L3 LINE CR1 1422 1575 -2 708 128 0 0 chr6 33792047 33792156 -155487398 + L1PA13 LINE L1 6048 6156 -7 678 191 141 48 chr6 33792466 33792677 -155486877 + MIR SINE MIR 34 262 0 685 212 68 56 chr6 33794353 33794603 -155484951 - MIR SINE MIR -4 258 6 456 307 92 62 chr6 33795229 33795258 -155484296 - L1MC/D LINE L1 -513 5649 5622 2177 179 42 0 chr6 33795258 33795666 -155483888 - MSTB1 LTR MaLR -4 428 4 456 307 92 62 chr6 33795666 33796675 -155482879 - L1MC/D LINE L1 -540 5622 4723 710 191 46 7 chr6 33796791 33796943 -155482611 + MER96B DNA MER1_type? 2 159 -258 273 81 0 0 chr6 33797159 33797196 -155482358 + MSTB LTR MaLR 1 37 -389 395 345 53 8 chr6 33799702 33799948 -155479606 - MIR SINE MIR -4 258 2 228 270 34 11 chr6 33800290 33800379 -155479175 - MIR SINE MIR -64 198 108 4871 38 2 7 chr6 33801991 33802576 -155476978 - L1PA5 LINE L1 -1 6153 5572 1177 15 0 0 chr6 33802576 33802707 -155476847 + L1PA5 LINE L1 5439 5569 -585 1858 164 6 6 chr6 33808529 33808840 -155470714 - AluJb SINE Alu -1 311 1 1669 144 7 50 chr6 33809574 33809872 -155469682 + AluSq SINE Alu 1 285 -28 192 40 0 0 chr6 33809875 33809900 -155469654 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 456 19 0 0 chr6 33809921 33809974 -155469580 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 3488 106 68 2 chr6 33812829 33813360 -155466194 + L1PB1 LINE L1 5572 6137 -14 215 356 182 18 chr6 33813473 33813962 -155465592 + L2 LINE L2 1848 2416 -898 228 33 0 0 chr6 33813980 33814010 -155465544 + L1MA8 LINE L1 5999 6028 -263 1267 151 72 0 chr6 33814037 33814288 -155465266 + L1MA8 LINE L1 6017 6285 -6 265 364 107 30 chr6 33814498 33815073 -155464481 + L2 LINE L2 2631 3250 -22 600 216 20 7 chr6 33815259 33815407 -155464147 - MER96B DNA MER1_type? -11 406 257 394 268 180 31 chr6 33816938 33817132 -155462422 + MIR SINE MIR 39 261 -1 345 333 13 7 chr6 33817667 33817817 -155461737 + (CCCA)n Simple_repeat Simple_repeat 1 151 0 376 282 5 48 chr6 33817892 33818114 -155461440 + (TCCA)n Simple_repeat Simple_repeat 1 212 0 2422 123 16 0 chr6 33819731 33820096 -155459458 - L1PB1 LINE L1 -5 6862 6492 271 89 0 63 chr6 33820096 33820175 -155459379 + (TA)n Simple_repeat Simple_repeat 2 75 0 3963 169 26 1 chr6 33820179 33821499 -155458055 - L1PB1 LINE L1 -360 6507 5151 4282 155 45 30 chr6 33821499 33822460 -155457094 + MER11C LTR ERVK 1 1067 -4 10716 179 132 8 chr6 33822466 33826742 -155452812 - L1PB1 LINE L1 -1707 5155 304 2379 77 0 3 chr6 33826742 33827040 -155452514 - AluY SINE Alu -13 298 2 10716 179 132 8 chr6 33827040 33827281 -155452273 - L1PB1 LINE L1 -6558 304 94 753 205 0 0 chr6 33827548 33827675 -155451879 - FLAM_C SINE Alu -6 127 1 551 353 124 30 chr6 33827685 33828626 -155450928 + L2 LINE L2 1812 2841 -473 344 185 339 0 chr6 33829822 33829952 -155449602 + MIR SINE MIR 79 252 -10 200 288 0 0 chr6 33830040 33830099 -155449455 + T-rich Low_complexity Low_complexity 2 60 0 641 246 138 13 chr6 33831739 33831963 -155447591 - MIR SINE MIR 0 262 11 399 313 199 30 chr6 33831965 33832368 -155447186 - L1MEd LINE L1 -1921 4208 3738 367 303 141 30 chr6 33832377 33832938 -155446616 - L1MEd LINE L1 -2436 3693 3071 523 289 126 58 chr6 33833023 33833404 -155446150 - L1MEd LINE L1 -4884 1235 829 294 242 0 15 chr6 33833588 33833654 -155445900 + L2 LINE L2 3238 3302 -11 519 278 155 28 chr6 33833724 33834008 -155445546 + MLT1I LTR MaLR 85 404 -5 2259 85 3 26 chr6 33835590 33835896 -155443658 - AluSx SINE Alu -13 299 1 845 162 51 38 chr6 33835901 33835931 -155443623 - Cheshire DNA MER1_type -128 2292 2264 2286 105 3 3 chr6 33835931 33836236 -155443318 + AluSq SINE Alu 1 305 -8 1752 168 16 36 chr6 33836246 33836555 -155442999 + AluJb SINE Alu 1 303 -9 845 162 51 38 chr6 33836555 33836748 -155442806 - Cheshire DNA MER1_type -164 2256 2055 1550 210 64 11 chr6 33836754 33837111 -155442443 - Cheshire DNA MER1_type -2044 376 1 281 228 51 38 chr6 33837120 33837199 -155442355 + MIR SINE MIR 162 241 -21 267 309 0 12 chr6 33837347 33837428 -155442126 - L2 LINE L2 0 3272 3193 2196 99 0 26 chr6 33837489 33837793 -155441761 - AluSg SINE Alu -14 296 1 2119 128 13 7 chr6 33837832 33838137 -155441417 - AluSx SINE Alu -5 307 1 1028 129 6 79 chr6 33838276 33838454 -155441100 - AluJb SINE Alu -147 165 1 2296 97 3 0 chr6 33838536 33838825 -155440729 - AluSg SINE Alu -20 290 1 1753 130 54 0 chr6 33839652 33839913 -155439641 + AluSx SINE Alu 20 294 -18 307 277 117 0 chr6 33840547 33840641 -155438913 + MIR SINE MIR 110 214 -48 198 0 0 0 chr6 33844891 33844913 -155434641 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1951 129 17 10 chr6 33846136 33846430 -155433124 + AluSx SINE Alu 1 296 -16 496 213 28 6 chr6 33846923 33847156 -155432398 + MLT1C LTR MaLR 54 322 -145 1343 143 160 4 chr6 33847297 33847534 -155432020 + AluJb SINE Alu 19 292 -20 1622 143 155 0 chr6 33847537 33847795 -155431759 + AluSx SINE Alu 1 298 -14 583 82 0 0 chr6 33847864 33847937 -155431617 - AluSq/x SINE Alu -198 114 42 827 225 106 9 chr6 33850409 33850627 -155428927 + MIR SINE MIR 3 241 -21 2686 42 0 3 chr6 33850780 33851086 -155428468 - AluY SINE Alu -6 305 1 578 204 30 30 chr6 33851112 33851244 -155428310 - FLAM_A SINE Alu -1 132 1 1564 143 121 7 chr6 33855322 33855594 -155423960 + AluJo SINE Alu 1 303 -9 2266 88 18 0 chr6 33855595 33855880 -155423674 + AluSg SINE Alu 1 290 -20 1661 201 10 17 chr6 33856083 33856371 -155423183 + AluJo SINE Alu 1 286 -26 2348 104 3 13 chr6 33856381 33856689 -155422865 + AluSq SINE Alu 3 307 -6 420 248 128 8 chr6 33858024 33858141 -155421413 + L2 LINE L2 3137 3267 -5 180 0 0 0 chr6 33858320 33858340 -155421214 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 279 0 0 0 chr6 33858339 33858370 -155421184 + (TG)n Simple_repeat Simple_repeat 2 32 0 1213 155 5 10 chr6 33858459 33858652 -155420902 - AluJb SINE Alu 0 312 121 6429 102 29 27 chr6 33858675 33859689 -155419865 - L1MA1 LINE L1 -104 6198 5188 2446 91 3 0 chr6 33859689 33859996 -155419558 - AluSp SINE Alu -5 308 1 6429 102 29 27 chr6 33859996 33860275 -155419279 - L1MA1 LINE L1 -1114 5188 4903 2124 126 3 0 chr6 33860275 33860569 -155418985 - AluSx SINE Alu -17 295 1 6429 102 29 27 chr6 33860569 33860624 -155418930 - L1MA1 LINE L1 -1399 4903 4850 257 184 107 97 chr6 33860625 33860728 -155418826 - AluJb SINE Alu -138 164 61 2110 128 7 3 chr6 33860740 33861037 -155418517 - AluSx SINE Alu -14 298 1 815 229 27 11 chr6 33861388 33861571 -155417983 + AluJo SINE Alu 120 305 -7 575 230 99 70 chr6 33861585 33861968 -155417586 - L1ME2 LINE L1 -277 5887 5470 1263 160 5 0 chr6 33862005 33862218 -155417336 - MER46A DNA MER2_type -22 214 1 234 253 27 0 chr6 33862218 33862293 -155417261 - L1ME2 LINE L1 -718 5444 5368 3346 95 24 32 chr6 33862294 33862787 -155416767 + LTR22B LTR ERVK 1 489 -3 306 308 69 25 chr6 33862836 33862890 -155416664 - L1ME2 LINE L1 -786 5360 5310 1694 157 78 0 chr6 33862890 33863171 -155416383 + AluSx SINE Alu 1 303 -9 306 308 69 25 chr6 33863171 33863275 -155416279 - L1ME2 LINE L1 -836 5310 5195 283 133 147 40 chr6 33863276 33863351 -155416203 - FLAM SINE Alu 0 133 51 2213 114 7 0 chr6 33863351 33863649 -155415905 - AluSq SINE Alu -13 300 1 1787 163 10 26 chr6 33863722 33864029 -155415525 - AluJb SINE Alu -10 302 1 2281 107 0 7 chr6 33864056 33864355 -155415199 + AluSc SINE Alu 1 297 -12 1957 165 0 16 chr6 33864420 33864736 -155414818 + AluJb SINE Alu 1 311 -1 389 228 57 0 chr6 33864761 33864884 -155414670 - L1ME2 LINE L1 -1129 5017 4888 1791 106 0 4 chr6 33864884 33865119 -155414435 - AluSg/x SINE Alu -1 309 76 332 218 40 10 chr6 33865134 33865235 -155414319 - L1ME2 LINE L1 -1528 4618 4515 1297 129 31 0 chr6 33865261 33865455 -155414099 - AluJo SINE Alu 0 312 113 23 0 0 0 chr6 33865459 33865482 -155414072 + AT_rich Low_complexity Low_complexity 1 23 0 230 239 22 101 chr6 33865672 33865810 -155413744 - L1ME2 LINE L1 -1959 4187 4061 950 148 0 138 chr6 33865818 33865936 -155413618 + AluJo SINE Alu 6 82 -230 2153 76 13 45 chr6 33865936 33866250 -155413304 - AluY SINE Alu -7 304 1 950 148 0 138 chr6 33866250 33866348 -155413206 + AluJo SINE Alu 82 192 -120 691 160 103 38 chr6 33866647 33866790 -155412764 - Charlie5 DNA MER1_type -22 2563 2400 1875 138 24 17 chr6 33866790 33867086 -155412468 + AluJb SINE Alu 7 304 -8 691 160 103 38 chr6 33867086 33867155 -155412399 - Charlie5 DNA MER1_type -185 2400 2337 1073 125 12 12 chr6 33867451 33867640 -155411914 - AluSg/x SINE Alu 0 310 122 259 245 21 98 chr6 33867794 33867937 -155411617 - L1MC5 LINE L1 -76 7885 7754 1016 164 7 0 chr6 33867993 33868145 -155411409 - FRAM SINE Alu -22 154 2 1050 184 132 67 chr6 33868155 33868243 -155411311 - L1MC5 LINE L1 -264 7697 7616 2410 95 0 7 chr6 33868243 33868547 -155411007 - AluSq SINE Alu -11 302 1 1050 184 132 67 chr6 33868547 33868935 -155410619 - L1MC5 LINE L1 -345 7616 7190 687 252 185 42 chr6 33868940 33869145 -155410409 - L1MEd LINE L1 -5025 1094 920 2511 89 0 0 chr6 33869145 33869448 -155410106 - AluSx SINE Alu -9 303 1 687 252 185 42 chr6 33869448 33869675 -155409879 - L1MEd LINE L1 -5199 920 600 2349 113 0 0 chr6 33870383 33870693 -155408861 - AluSg SINE Alu 0 310 1 1928 133 14 0 chr6 33874047 33874362 -155405192 + AluSx SINE Alu 1 312 0 1617 146 26 52 chr6 33874392 33874700 -155404854 + AluJo SINE Alu 1 300 -12 312 294 101 0 chr6 33874855 33874964 -155404590 - L2 LINE L2 -2 3311 3192 215 350 146 0 chr6 33874954 33875077 -155404477 - MIR SINE MIR -59 203 63 * 372 22 0 0 chr6 33875796 33875841 -155403713 + (TG)n Simple_repeat Simple_repeat 1 45 0 2081 125 0 31 chr6 33876030 33876349 -155403205 - AluSx SINE Alu 0 312 4 1986 151 10 0 chr6 33876354 33876646 -155402908 - AluJb SINE Alu -17 295 1 2182 103 14 7 chr6 33876680 33876971 -155402583 + AluSp SINE Alu 1 293 -20 207 0 0 0 chr6 33876972 33876995 -155402559 + (TA)n Simple_repeat Simple_repeat 1 23 0 1087 104 0 0 chr6 33877000 33877135 -155402419 + AluSq/x SINE Alu 1 135 -178 2215 131 3 3 chr6 33877135 33877447 -155402107 + AluSq SINE Alu 1 312 -1 331 246 14 0 chr6 33877449 33877518 -155402036 - L1MCa LINE L1 -4362 2064 1995 535 76 0 0 chr6 33877535 33877601 -155401953 + Alu SINE Alu 1 66 -244 2075 133 16 7 chr6 33877605 33877914 -155401640 + AluJb SINE Alu 1 312 0 2117 117 3 0 chr6 33878647 33879054 -155400500 - AluSp SINE Alu 0 408 1 673 132 16 0 chr6 33879064 33879185 -155400369 + CT-rich Low_complexity Low_complexity 2 124 0 918 170 24 24 chr6 33879193 33879358 -155400196 - AluJb SINE Alu -10 302 138 1001 195 53 11 chr6 33879406 33879799 -155399755 + Charlie4a DNA MER1_type 61 507 -1 2419 100 0 3 chr6 33879868 33880179 -155399375 - AluSx SINE Alu -2 310 1 676 223 42 12 chr6 33880435 33880532 -155399022 + MER97b DNA MER1_type? 6 112 -941 2351 102 0 0 chr6 33880532 33880835 -155398719 - AluSx SINE Alu -9 303 1 676 223 42 12 chr6 33880835 33880903 -155398651 + MER97b DNA MER1_type? 112 176 -877 465 34 0 0 chr6 33880981 33881040 -155398514 + (CA)n Simple_repeat Simple_repeat 2 60 0 546 241 0 50 chr6 33881632 33881773 -155397781 - MLT1E3 LTR MaLR -436 188 55 1705 161 12 62 chr6 33882367 33882493 -155397061 + AluJb SINE Alu 1 132 -180 2350 80 7 0 chr6 33882493 33882782 -155396772 - AluSg SINE Alu -19 291 1 1705 161 12 62 chr6 33882782 33882978 -155396576 + AluJb SINE Alu 132 307 -5 2276 117 0 0 chr6 33883106 33883404 -155396150 - AluSq SINE Alu -15 298 1 702 233 71 57 chr6 33884071 33884095 -155395459 - MIR SINE MIR -30 232 210 2590 105 57 38 chr6 33884095 33884165 -155395389 - MSTA LTR MaLR 0 428 361 2378 100 0 0 chr6 33884165 33884465 -155395089 + AluSx SINE Alu 2 301 -11 1852 148 28 24 chr6 33884472 33884763 -155394791 + AluJb SINE Alu 2 293 -19 2590 105 57 38 chr6 33884763 33885104 -155394450 - MSTA LTR MaLR -72 356 1 702 233 71 57 chr6 33885104 33885289 -155394265 - MIR SINE MIR -52 210 20 1794 145 76 10 chr6 33885295 33885656 -155393898 - AluSg SINE Alu 0 380 1 2185 110 7 10 chr6 33885666 33885974 -155393580 - AluSx SINE Alu -5 307 1 1800 331 109 33 chr6 33885991 33887288 -155392266 + L2 LINE L2 71 1465 -1849 1672 160 13 69 chr6 33887354 33887672 -155391882 + AluJb SINE Alu 1 300 -12 346 135 0 27 chr6 33887672 33887746 -155391808 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 210 37 0 0 chr6 33887759 33887786 -155391768 + (TA)n Simple_repeat Simple_repeat 1 27 0 307 251 70 55 chr6 33887786 33887857 -155391697 + L1MC4 LINE L1 7695 7763 -279 2289 118 0 0 chr6 33887857 33888163 -155391391 - AluSc SINE Alu -3 306 1 307 251 70 55 chr6 33888163 33888290 -155391264 + L1MC4 LINE L1 7763 7896 -146 2209 104 3 13 chr6 33888338 33888645 -155390909 + AluSp SINE Alu 1 304 -9 1812 179 14 0 chr6 33888670 33888961 -155390593 + AluJo SINE Alu 6 300 -12 369 245 48 88 chr6 33888985 33889132 -155390422 + L1MC4 LINE L1 7902 8042 0 926 268 98 54 chr6 33889141 33889640 -155389914 + L2 LINE L2 1810 2336 -978 2368 95 0 3 chr6 33889640 33889944 -155389610 - AluSq SINE Alu -10 303 1 926 268 98 54 chr6 33889944 33889982 -155389572 + L2 LINE L2 2336 2371 -943 2347 222 81 31 chr6 33889989 33890562 -155388992 + Zaphod DNA AcHobo 1 613 -3418 1097 66 20 7 chr6 33890562 33890713 -155388841 + L1PB1 LINE L1 5997 6149 -2 2347 222 81 31 chr6 33890713 33890807 -155388747 + Zaphod DNA AcHobo 613 701 -3330 908 202 93 0 chr6 33890807 33891000 -155388554 + MER2 DNA MER2_type 1 211 -134 422 48 0 32 chr6 33891013 33891075 -155388479 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2158 107 7 3 chr6 33891075 33891364 -155388190 - AluY SINE Alu -19 292 3 283 261 15 0 chr6 33891385 33891450 -155388104 + MER2 DNA MER2_type 280 345 0 229 133 20 166 chr6 33891450 33891474 -155388080 + Zaphod DNA AcHobo 700 726 -3305 1937 183 25 30 chr6 33891474 33891685 -155387869 - MLT1A1 LTR MaLR 0 365 155 2057 148 0 0 chr6 33891685 33891975 -155387579 - AluSx SINE Alu -22 290 1 1937 183 25 30 chr6 33891975 33892130 -155387424 - MLT1A1 LTR MaLR -210 155 1 229 133 20 166 chr6 33892130 33892162 -155387392 + Zaphod DNA AcHobo 726 761 -3270 1844 174 3 0 chr6 33892162 33892450 -155387104 - AluJb SINE Alu -23 289 1 229 133 20 166 chr6 33892450 33892543 -155387011 + Zaphod DNA AcHobo 761 828 -3203 1262 206 0 0 chr6 33892544 33892762 -155386792 + AluJo SINE Alu 3 220 -92 341 74 0 19 chr6 33892762 33892816 -155386738 + AluSq/x SINE Alu 86 138 -164 288 186 0 0 chr6 33892834 33892893 -155386661 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1058 190 17 0 chr6 33892893 33893072 -155386482 + AluJb SINE Alu 125 306 -6 277 273 100 0 chr6 33893145 33893255 -155386299 + MER102a DNA MER1_type 197 317 -13 214 162 0 0 chr6 33893395 33893432 -155386122 + (CAA)n Simple_repeat Simple_repeat 2 38 0 467 244 52 15 chr6 33893440 33893575 -155385979 - MIR SINE MIR -20 242 103 2328 95 14 0 chr6 33893584 33893880 -155385674 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr6 33894117 33894141 -155385413 + AT_rich Low_complexity Low_complexity 1 24 0 1053 272 66 21 chr6 33894316 33894975 -155384579 - L1MC1 LINE L1 -345 5817 5181 2446 83 0 3 chr6 33894975 33895277 -155384277 - AluY SINE Alu -10 301 1 1053 272 66 21 chr6 33895277 33895357 -155384197 - L1MC1 LINE L1 -981 5181 5106 403 201 98 55 chr6 33895354 33895518 -155384036 - L1MA8 LINE L1 -1 6290 6120 * 1916 167 7 3 chr6 33895518 33895824 -155383730 - AluJo SINE Alu -5 307 1 872 144 23 0 chr6 33895824 33895956 -155383598 - AluJo SINE Alu -177 135 1 938 93 27 87 chr6 33895956 33896139 -155383415 - L1MA8 LINE L1 -167 6124 5953 1157 152 0 16 chr6 33896148 33896332 -155383222 - FRAM SINE Alu -2 174 1 4844 147 58 82 chr6 33896335 33896972 -155382582 - L1MA8 LINE L1 -351 5940 5290 1853 182 0 7 chr6 33896972 33897268 -155382286 + AluJo SINE Alu 1 294 -18 4844 147 58 82 chr6 33897268 33897464 -155382090 - L1MA8 LINE L1 -1001 5290 5091 437 125 0 0 chr6 33897464 33897528 -155382026 + AluSc SINE Alu 226 289 -20 4844 147 58 82 chr6 33897528 33897567 -155381987 - L1MA8 LINE L1 -1200 5091 5053 1574 116 0 0 chr6 33897567 33897766 -155381788 - AluSc SINE Alu -110 199 1 4844 147 58 82 chr6 33897766 33897808 -155381746 - L1MA8 LINE L1 -1238 5053 5012 1796 159 55 0 chr6 33897808 33898098 -155381456 - AluSx SINE Alu -6 306 1 4844 147 58 82 chr6 33898098 33899307 -155380247 - L1MA8 LINE L1 -1279 5012 3864 447 358 67 0 chr6 33899310 33899503 -155380051 - L1MC1 LINE L1 -1031 5115 4910 2104 122 153 42 chr6 33899563 33899771 -155379783 - MSTA LTR MaLR 0 428 245 2084 143 3 7 chr6 33899771 33900071 -155379483 - AluJb SINE Alu -13 299 1 2104 122 153 42 chr6 33900071 33900247 -155379307 - MSTA LTR MaLR -183 245 1 595 316 94 25 chr6 33900266 33900438 -155379116 - L1MC1 LINE L1 -1329 4817 4658 2341 91 0 7 chr6 33900438 33900734 -155378820 + AluSg SINE Alu 1 294 -16 595 316 94 25 chr6 33900734 33900992 -155378562 - L1MC1 LINE L1 -1488 4658 4419 2374 95 0 0 chr6 33900992 33901298 -155378256 - AluY SINE Alu -5 306 1 595 316 94 25 chr6 33901298 33901556 -155377998 - L1MC1 LINE L1 -1727 4419 4080 1425 157 4 44 chr6 33901652 33901774 -155377780 - AluJo SINE Alu -74 238 113 3251 100 4 39 chr6 33901774 33901864 -155377690 + L1PA11 LINE L1 5697 5789 -385 2187 114 27 7 chr6 33901864 33902163 -155377391 + AluSg SINE Alu 1 305 -5 2284 117 0 0 chr6 33902164 33902463 -155377091 + AluSg SINE Alu 2 300 -10 3251 100 4 39 chr6 33902463 33902859 -155376695 + L1PA11 LINE L1 5788 6168 -6 1425 157 4 44 chr6 33902859 33902984 -155376570 - AluJo SINE Alu -199 113 1 706 263 110 76 chr6 33903289 33904053 -155375501 - L2 LINE L2 0 3272 2485 235 305 105 11 chr6 33904086 33904181 -155375373 + L2 LINE L2 3209 3312 -1 1949 163 3 3 chr6 33904610 33904917 -155374637 - AluSx SINE Alu -5 307 1 22 35 0 0 chr6 33905052 33905081 -155374473 + AT_rich Low_complexity Low_complexity 1 29 0 218 169 42 28 chr6 33906210 33906281 -155373273 + GA-rich Low_complexity Low_complexity 1 72 0 514 241 137 29 chr6 33906798 33906821 -155372733 - MIR SINE MIR -10 252 233 998 169 33 0 chr6 33906821 33907004 -155372550 - MER5A DNA MER1_type 0 189 1 514 241 137 29 chr6 33907004 33907213 -155372341 - MIR SINE MIR -29 233 4 294 308 16 44 chr6 33909463 33909645 -155369909 + GA-rich Low_complexity Low_complexity 4 180 0 590 262 47 29 chr6 33910695 33910867 -155368687 - MIR SINE MIR -4 258 84 472 129 129 0 chr6 33910877 33910962 -155368592 + MER5A DNA MER1_type 8 103 -86 1740 177 0 44 chr6 33911121 33911437 -155368117 - AluJb SINE Alu -10 302 1 397 292 110 26 chr6 33912429 33912583 -155366971 + MER5A DNA MER1_type 7 173 -16 316 183 32 75 chr6 33912630 33912723 -155366831 + MIR SINE MIR 131 219 -43 262 242 10 30 chr6 33913045 33913144 -155366410 + C-rich Low_complexity Low_complexity 5 101 0 233 262 16 0 chr6 33914398 33914459 -155365095 + C-rich Low_complexity Low_complexity 5 66 0 243 0 0 0 chr6 33915757 33915784 -155363770 + (TC)n Simple_repeat Simple_repeat 2 28 0 197 62 0 31 chr6 33921414 33921446 -155358108 + (CGG)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr6 33921663 33921684 -155357870 + GC_rich Low_complexity Low_complexity 1 21 0 708 78 0 0 chr6 33922065 33922155 -155357399 - HY4 scRNA scRNA -3 90 1 1387 98 0 0 chr6 33922821 33923004 -155356550 - AluSg/x SINE Alu -9 301 119 211 290 72 0 chr6 33923131 33923200 -155356354 + MER91C DNA MER1_type 43 116 -24 399 304 82 32 chr6 33924463 33924621 -155354933 - MIR3 SINE MIR -27 181 16 273 326 132 16 chr6 33924639 33924829 -155354725 + MIR SINE MIR 20 231 -31 24 0 0 0 chr6 33924829 33924853 -155354701 + AT_rich Low_complexity Low_complexity 1 24 0 210 94 19 38 chr6 33929210 33929263 -155350291 + (CGGGGG)n Simple_repeat Simple_repeat 4 55 0 218 319 18 35 chr6 33930467 33930580 -155348974 + L3b LINE CR1 1323 1433 -150 263 246 7 0 chr6 33931806 33931948 -155347606 + GA-rich Low_complexity Low_complexity 2 144 0 402 238 238 0 chr6 33932968 33933119 -155346435 + MIR SINE MIR 76 262 0 313 333 15 7 chr6 33933631 33933766 -155345788 + (CCCA)n Simple_repeat Simple_repeat 1 136 0 422 282 11 22 chr6 33933835 33934016 -155345538 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 306 296 22 9 chr6 33934036 33934271 -155345283 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 276 270 93 59 chr6 33934594 33934799 -155344755 + MIR SINE MIR 17 211 -51 261 0 0 0 chr6 33935632 33935661 -155343893 + (GGGAA)n Simple_repeat Simple_repeat 1 29 0 232 347 0 28 chr6 33935775 33935951 -155343603 + C-rich Low_complexity Low_complexity 4 174 0 2112 119 3 0 chr6 33939031 33939326 -155340228 - AluSx SINE Alu -16 296 1 2108 121 3 0 chr6 33939466 33939763 -155339791 - AluSq SINE Alu -15 298 1 2242 105 0 34 chr6 33939970 33940293 -155339261 + AluSx SINE Alu 1 312 0 410 271 234 16 chr6 33946530 33946718 -155332836 - MIR SINE MIR -21 241 13 441 229 137 11 chr6 33947303 33947478 -155332076 - MIR3 SINE MIR -9 199 3 204 179 0 0 chr6 33953788 33953827 -155325727 + (TG)n Simple_repeat Simple_repeat 2 40 0 2094 97 3 3 chr6 33961213 33961501 -155318053 - AluSc SINE Alu -14 295 8 1183 142 0 44 chr6 33961828 33961854 -155317700 + AluJo SINE Alu 86 112 -200 1708 162 47 3 chr6 33961854 33962151 -155317403 - AluJb SINE Alu -2 310 1 1183 142 0 44 chr6 33962151 33962328 -155317226 + AluJo SINE Alu 112 280 -32 204 40 0 0 chr6 33962328 33962353 -155317201 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1704 164 0 7 chr6 33962865 33963152 -155316402 - AluJb SINE Alu -2 310 26 2360 67 0 0 chr6 33963159 33963456 -155316098 - AluY SINE Alu -14 297 1 214 133 111 0 chr6 33964144 33964189 -155315365 + MIR SINE MIR 102 151 -111 942 179 196 0 chr6 33965046 33965275 -155314279 + ORSL DNA AcHobo 1 274 -1 258 227 180 8 chr6 33965309 33965414 -155314140 - L1MC5 LINE L1 -262 7699 7567 243 0 0 0 chr6 33965414 33965441 -155314113 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 227 180 8 chr6 33965441 33965463 -155314091 - L1MC5 LINE L1 -394 7567 7550 1877 150 7 10 chr6 33965567 33965874 -155313680 - AluJb SINE Alu -6 306 1 250 244 59 17 chr6 33965876 33965995 -155313559 + Charlie1 DNA MER1_type 2591 2714 -47 436 239 39 71 chr6 33966056 33966211 -155313343 - MER5B DNA MER1_type -28 150 1 2164 131 0 3 chr6 33966244 33966557 -155312997 + AluSx SINE Alu 1 312 0 2371 84 10 0 chr6 33966577 33966887 -155312667 + AluSp SINE Alu 1 313 0 353 284 81 7 chr6 33966992 33967140 -155312414 - MLT1L LTR MaLR -33 582 424 1053 212 97 26 chr6 33967815 33968084 -155311470 - MLT1J LTR MaLR -7 504 217 1944 93 4 7 chr6 33968086 33968355 -155311199 - AluSx SINE Alu 0 312 45 186 71 0 0 chr6 33968632 33968660 -155310894 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1052 122 0 0 chr6 33968660 33968808 -155310746 - AluSx SINE Alu -26 284 137 4701 69 26 9 chr6 33968808 33969912 -155309642 + MER11A LTR ERVK 3 1266 0 1024 115 0 14 chr6 33969912 33970060 -155309494 - AluSx SINE Alu -167 146 1 1006 161 36 21 chr6 33970212 33970404 -155309150 + MER3 DNA MER1_type 15 209 0 2083 110 7 0 chr6 33970693 33971022 -155308532 + AluSx SINE Alu 1 331 0 573 162 103 22 chr6 33971028 33971185 -155308369 - L1ME1 LINE L1 -5 6161 5997 180 220 20 0 chr6 33971474 33971524 -155308030 + MIR SINE MIR 185 235 -27 572 212 66 33 chr6 33972520 33972671 -155306883 - MER3 DNA MER1_type -53 156 1 1402 134 46 8 chr6 33972863 33972913 -155306641 - L1MA8 LINE L1 -4 6287 6240 252 0 0 0 chr6 33972913 33972941 -155306613 + (TA)n Simple_repeat Simple_repeat 1 28 0 1402 134 46 8 chr6 33972941 33973151 -155306403 - L1MA8 LINE L1 -51 6240 6017 1282 180 99 0 chr6 33974170 33974442 -155305112 - AluJb SINE Alu -13 299 1 25 31 0 0 chr6 33974690 33974722 -155304832 + AT_rich Low_complexity Low_complexity 1 32 0 559 136 0 0 chr6 33974804 33974885 -155304669 - AluS SINE Alu -11 300 220 1943 171 25 53 chr6 33974886 33975279 -155304275 + MLT2B3 LTR ERVL 167 548 -6 1466 220 26 0 chr6 33975313 33975618 -155303936 + MER68 LTR ERV1 250 562 0 2267 85 0 26 chr6 33975836 33976142 -155303412 - AluSq SINE Alu -15 298 1 1485 175 95 0 chr6 33976448 33976722 -155302832 + AluSx SINE Alu 1 300 -12 727 221 6 31 chr6 33977210 33977373 -155302181 + AluJb SINE Alu 123 281 -31 204 40 0 0 chr6 33977374 33977399 -155302155 + (TC)n Simple_repeat Simple_repeat 2 26 0 342 0 0 0 chr6 33977399 33977437 -155302117 + (CA)n Simple_repeat Simple_repeat 1 38 0 2319 92 0 0 chr6 33977506 33977811 -155301743 - AluSq SINE Alu -8 305 1 35 24 0 0 chr6 33977871 33977913 -155301641 + AT_rich Low_complexity Low_complexity 1 42 0 313 250 227 0 chr6 33978671 33978799 -155300755 - MIR SINE MIR 0 262 106 276 185 0 0 chr6 33978947 33979001 -155300553 + CT-rich Low_complexity Low_complexity 2 55 0 208 0 37 0 chr6 33979002 33979029 -155300525 + (TC)n Simple_repeat Simple_repeat 1 28 0 1346 211 22 4 chr6 33979029 33979177 -155300377 - AluJo SINE Alu -32 280 123 279 0 0 0 chr6 33979177 33979208 -155300346 + (TA)n Simple_repeat Simple_repeat 1 31 0 1346 211 22 4 chr6 33979208 33979334 -155300220 - AluJo SINE Alu -189 123 1 614 317 146 35 chr6 33979344 33980237 -155299317 + L2 LINE L2 1812 2803 -511 281 200 67 0 chr6 33981539 33981599 -155297955 + MIR SINE MIR 81 144 -64 2499 148 10 0 chr6 33981606 33982005 -155297549 + MER57A LTR ERV1 1 403 0 4939 144 12 32 chr6 33982005 33982590 -155296964 + MER57A-int LTR ERV1 1 567 -6970 1750 149 14 17 chr6 33982590 33982879 -155296675 + AluSx SINE Alu 3 290 -22 4939 144 12 32 chr6 33982879 33983115 -155296439 + MER57A-int LTR ERV1 567 806 -6731 * 12365 124 21 35 chr6 33983108 33983268 -155296286 + MER57A-int LTR ERV1 361 522 -5424 2186 95 3 0 chr6 33983268 33983562 -155295992 - AluSx SINE Alu -17 295 1 12365 124 21 35 chr6 33983562 33983680 -155295874 + MER57A-int LTR ERV1 522 640 -5306 2314 75 0 25 chr6 33983680 33983999 -155295555 - AluY SINE Alu 0 311 1 12365 124 21 35 chr6 33983999 33984525 -155295029 + MER57A-int LTR ERV1 640 1172 -4774 2493 40 7 0 chr6 33984525 33984827 -155294727 + AluY SINE Alu 1 304 -7 12365 124 21 35 chr6 33984827 33985626 -155293928 + MER57A-int LTR ERV1 1172 1937 -4009 1931 138 0 0 chr6 33985626 33985917 -155293637 + AluSx SINE Alu 1 291 -21 12365 124 21 35 chr6 33985917 33986272 -155293282 + MER57A-int LTR ERV1 1937 2295 -3651 1255 160 5 0 chr6 33986289 33986501 -155293053 + AluSg/x SINE Alu 89 301 -9 321 26 0 0 chr6 33986515 33986553 -155293001 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1404 105 0 0 chr6 33986553 33986743 -155292811 + MER57A-int LTR ERV1 5036 5225 -2312 939 53 0 0 chr6 33986743 33986857 -155292697 - AluY SINE Alu -15 296 183 14196 87 21 4 chr6 33986857 33988753 -155290801 + MER57A-int LTR ERV1 5219 7146 -391 671 93 22 93 chr6 33988753 33988892 -155290662 + LTR54B LTR ERV1 3 131 -367 1509 101 101 8 chr6 33988892 33988971 -155290583 + MER57A-int LTR ERV1 7279 7349 -188 203 0 0 36 chr6 33988971 33988999 -155290555 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1509 101 101 8 chr6 33988999 33989156 -155290398 + MER57A-int LTR ERV1 7349 7537 0 2440 119 42 0 chr6 33989156 33989535 -155290019 + MER57A LTR ERV1 1 395 -8 1913 105 25 68 chr6 33989535 33989860 -155289694 - AluSx SINE Alu -1 311 1 1235 86 0 0 chr6 33989880 33990043 -155289511 - AluY SINE Alu -18 293 131 185 316 35 0 chr6 33990810 33990867 -155288687 + L2 LINE L2 3238 3296 -17 2086 86 69 0 chr6 33994040 33994331 -155285223 + AluSp SINE Alu 1 311 -2 313 333 100 52 chr6 33994458 33994689 -155284865 - L3 LINE CR1 -1006 571 330 2840 9 0 0 chr6 33995790 33996108 -155283446 - AluYb8 SINE Alu 0 318 1 339 279 57 51 chr6 33996153 33996331 -155283223 + MER5A DNA MER1_type 1 189 0 1457 218 58 93 chr6 33996752 33997386 -155282168 + LTR9 LTR ERV1 1 612 0 307 207 17 0 chr6 33997431 33997489 -155282065 + HUERS-P3 LTR ERV1 38 96 -7322 1492 167 7 66 chr6 33997494 33997799 -155281755 + HUERS-P3 LTR ERV1 256 542 -6876 8425 161 16 18 chr6 33997808 33998821 -155280733 + HUERS-P3 LTR ERV1 750 1764 -6833 4380 180 12 43 chr6 33998821 33999806 -155279748 + LTR5 LTR ERVK 1 955 -14 8425 161 16 18 chr6 33999806 34001034 -155278520 + HUERS-P3 LTR ERV1 1764 3284 -5313 1017 127 7 0 chr6 34001027 34001169 -155278385 + HUERS-P3 LTR ERV1 4539 4681 -4238 * 4145 127 66 8 chr6 34001171 34001810 -155277744 + HUERS-P3 LTR ERV1 4901 5576 -3343 4140 204 27 1 chr6 34001796 34002528 -155277026 + HUERS-P3 LTR ERV1 6162 6912 -2007 * 477 179 0 36 chr6 34002528 34002640 -155276914 + HUERS-P3 LTR ERV1 6865 6972 -1947 699 128 111 39 chr6 34002644 34002824 -155276730 + HUERS-P3 LTR ERV1 2384 2576 -2439 1539 140 3 14 chr6 34003107 34003378 -155276176 + HUERS-P3 LTR ERV1 7176 8919 0 1652 227 39 81 chr6 34003378 34004017 -155275537 + LTR9 LTR ERV1 1 612 0 209 340 75 19 chr6 34004886 34004992 -155274562 + MIR SINE MIR 40 151 -57 186 207 103 46 chr6 34005211 34005298 -155274256 + L2 LINE L2 2966 3057 -215 248 130 22 0 chr6 34005425 34005471 -155274083 + CT-rich Low_complexity Low_complexity 2 48 0 2080 105 10 0 chr6 34005508 34005802 -155273752 - AluSg SINE Alu -13 297 1 431 344 78 0 chr6 34006876 34007068 -155272486 + MIR SINE MIR 50 256 -6 2763 224 19 0 chr6 34010405 34011021 -155268533 + L1 LINE L1 4750 5377 -769 355 264 7 68 chr6 34013882 34014030 -155265524 + MIR3 SINE MIR 50 188 -20 203 277 170 71 chr6 34015100 34015241 -155264313 - MER5B DNA MER1_type 0 178 24 2081 82 7 4 chr6 34015399 34015716 -155263838 - AluSp SINE Alu 0 321 4 1906 114 3 21 chr6 34015721 34016032 -155263522 - AluSq SINE Alu 0 306 1 1594 144 0 61 chr6 34016216 34016528 -155263026 - AluJb SINE Alu -15 297 5 2156 121 0 0 chr6 34016537 34016842 -155262712 - AluSx SINE Alu -7 305 1 1055 195 0 5 chr6 34016908 34017043 -155262511 + AluJo SINE Alu 1 136 -176 2291 83 10 0 chr6 34017043 34017344 -155262210 + AluSp SINE Alu 2 305 -8 1055 195 0 5 chr6 34017344 34017408 -155262146 + AluJo SINE Alu 136 199 -113 324 65 0 0 chr6 34017416 34017462 -155262092 + Alu SINE Alu 257 302 0 875 129 0 23 chr6 34017511 34017643 -155261911 - FLAM_C SINE Alu -4 129 1 2004 99 35 0 chr6 34017668 34017952 -155261602 - AluSp SINE Alu -19 294 1 1544 117 36 0 chr6 34018216 34018438 -155261116 + MER30 DNA MER1_type 1 230 0 1996 101 0 52 chr6 34018715 34019022 -155260532 - AluSq SINE Alu -20 293 3 871 259 8 51 chr6 34019159 34019363 -155260191 - MIR SINE MIR 0 262 70 2218 116 7 0 chr6 34019363 34019673 -155259881 + AluSq SINE Alu 1 312 -1 871 259 8 51 chr6 34019673 34019723 -155259831 - MIR SINE MIR -192 70 19 2120 136 0 0 chr6 34019749 34020059 -155259495 - AluSx SINE Alu -2 310 1 2253 96 3 0 chr6 34020069 34020370 -155259184 - AluSp SINE Alu -11 302 1 230 336 96 34 chr6 34020373 34020519 -155259035 - L2 LINE L2 -566 2748 2594 338 309 129 0 chr6 34020582 34020721 -155258833 + L2 LINE L2 3116 3272 0 729 185 90 42 chr6 34020979 34021168 -155258386 - MIR SINE MIR -63 199 2 215 305 42 32 chr6 34023206 34023301 -155256253 + MIR SINE MIR 21 116 -146 650 127 16 0 chr6 34023337 34023463 -155256091 - MER33 DNA MER1_type 0 363 236 940 114 76 11 chr6 34023470 34023629 -155255925 - Tigger4(Zombi) DNA MER2_type -11 2720 2546 2242 89 13 10 chr6 34023629 34023933 -155255621 - AluSx SINE Alu -7 305 1 940 114 76 11 chr6 34023933 34023957 -155255597 - Tigger4(Zombi) DNA MER2_type -185 2546 2525 790 161 0 0 chr6 34023953 34024077 -155255477 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 270 222 63 0 chr6 34024029 34024092 -155255462 + MER46A DNA MER2_type 97 163 -73 * 2107 112 16 3 chr6 34024124 34024429 -155255125 + AluSq SINE Alu 1 309 -4 2243 77 0 7 chr6 34024439 34024753 -155254801 + AluSx SINE Alu 1 312 0 1087 179 0 0 chr6 34024753 34024932 -155254622 + AluJb SINE Alu 134 312 0 678 221 0 0 chr6 34024932 34025077 -155254477 - MER33 DNA MER1_type -179 145 1 277 339 46 8 chr6 34025313 34025443 -155254111 + L2 LINE L2 2567 2701 -613 2277 102 0 0 chr6 34025470 34025774 -155253780 - AluSx SINE Alu -8 304 1 662 149 67 8 chr6 34025835 34025969 -155253585 - Charlie1 DNA MER1_type 0 2761 2620 * 675 233 33 73 chr6 34025953 34026082 -155253472 - Charlie1 DNA MER1_type -2522 239 106 2423 47 0 3 chr6 34026082 34026382 -155253172 - AluY SINE Alu -12 299 1 2429 48 0 0 chr6 34026390 34026685 -155252869 - AluY SINE Alu -15 296 2 675 233 33 73 chr6 34026685 34026791 -155252763 - Charlie1 DNA MER1_type -2662 99 5 349 231 46 31 chr6 34027126 34027256 -155252298 + L2 LINE L2 3134 3265 -7 186 133 0 0 chr6 34028582 34028612 -155250942 + (GGA)n Simple_repeat Simple_repeat 3 32 0 245 229 0 0 chr6 34029030 34029078 -155250476 + C-rich Low_complexity Low_complexity 1 48 0 197 272 54 22 chr6 34030097 34030189 -155249365 + MIR SINE MIR 29 123 -139 397 203 70 47 chr6 34032505 34032633 -155246921 + MIR SINE MIR 110 240 -22 192 125 0 0 chr6 34032692 34032724 -155246830 + MIR SINE MIR 84 115 -147 207 0 0 0 chr6 34036186 34036209 -155243345 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 459 328 0 0 chr6 34040339 34040470 -155239084 + MIR SINE MIR 18 148 -114 1351 174 35 41 chr6 34040483 34040609 -155238945 - Cheshire DNA MER1_type 0 2420 2295 2145 113 0 0 chr6 34040609 34040901 -155238653 - AluSx SINE Alu -20 292 1 2129 85 3 26 chr6 34040901 34041207 -155238347 - AluSx SINE Alu -13 299 1 1351 174 35 41 chr6 34041207 34041242 -155238312 - Cheshire DNA MER1_type -124 2296 2262 2168 105 3 3 chr6 34041242 34041547 -155238007 + AluSq SINE Alu 1 305 -8 1637 168 16 36 chr6 34041557 34041866 -155237688 + AluJb SINE Alu 1 303 -9 1351 174 35 41 chr6 34041866 34042059 -155237495 - Cheshire DNA MER1_type -167 2253 2055 1592 210 64 11 chr6 34042065 34042422 -155237132 - Cheshire DNA MER1_type -2044 376 1 261 228 51 38 chr6 34042431 34042510 -155237044 + MIR SINE MIR 162 241 -21 262 309 0 12 chr6 34042658 34042739 -155236815 - L2 LINE L2 0 3272 3193 2086 95 0 26 chr6 34042800 34043104 -155236450 - AluSg SINE Alu -14 296 1 2006 125 13 7 chr6 34043143 34043448 -155236106 - AluSx SINE Alu -5 307 1 957 129 6 79 chr6 34043587 34043765 -155235789 - AluJb SINE Alu -147 165 1 2169 100 3 0 chr6 34043845 34044136 -155235418 - AluSg SINE Alu -18 292 1 1631 135 54 0 chr6 34044963 34045223 -155234331 + AluSx SINE Alu 20 293 -19 1454 113 0 19 chr6 34045863 34046076 -155233478 - AluSx SINE Alu -103 209 1 823 185 15 0 chr6 34046077 34046212 -155233342 - AluJo SINE Alu -174 138 2 2298 109 0 0 chr6 34046244 34046556 -155232998 - AluSx SINE Alu 0 312 1 301 266 145 0 chr6 34046584 34046708 -155232846 - HAL1 LINE L1 -1472 1035 894 2443 68 0 3 chr6 34046744 34047055 -155232499 - AluY SINE Alu -1 310 1 2210 105 0 3 chr6 34047058 34047372 -155232182 - AluSq SINE Alu 0 313 1 290 264 23 0 chr6 34048201 34048288 -155231266 - HAL1 LINE L1 -1597 910 822 2263 88 3 0 chr6 34048295 34048590 -155230964 + AluSp SINE Alu 1 296 -17 361 222 44 44 chr6 34048591 34048681 -155230873 - L1MC4 LINE L1 -1340 6702 6613 1540 113 0 26 chr6 34048701 34048932 -155230622 + AluSx SINE Alu 1 225 -87 1133 122 6 0 chr6 34048932 34049088 -155230466 - AluSx SINE Alu -155 157 1 2311 71 10 3 chr6 34049106 34049415 -155230139 - AluY SINE Alu 0 311 1 2201 82 0 3 chr6 34049417 34049708 -155229846 - AluSc SINE Alu -17 292 3 465 222 5 101 chr6 34049709 34049764 -155229790 + Charlie2 DNA MER1_type 2687 2746 -116 2145 119 0 0 chr6 34049764 34050059 -155229495 - AluSg SINE Alu -15 295 1 465 222 5 101 chr6 34050059 34050192 -155229362 + Charlie2 DNA MER1_type 2746 2857 -5 628 288 7 7 chr6 34050207 34050358 -155229196 + Zaphod DNA AcHobo 2 152 -3879 1449 206 88 57 chr6 34050358 34050542 -155229012 - MLT1E LTR MaLR 0 593 416 2100 122 3 0 chr6 34050542 34050853 -155228701 + AluSx SINE Alu 1 312 0 1449 206 88 57 chr6 34050853 34051056 -155228498 - MLT1E LTR MaLR -177 416 194 1905 137 0 16 chr6 34051068 34051374 -155228180 - AluSg SINE Alu -9 301 1 1117 179 0 0 chr6 34051374 34051569 -155227985 + AluJo SINE Alu 117 311 -1 524 174 43 105 chr6 34051585 34051712 -155227842 + L1MC4a LINE L1 7474 7607 -201 1079 168 0 6 chr6 34051712 34051879 -155227675 + FRAM SINE Alu 1 166 0 524 174 43 105 chr6 34051879 34051912 -155227642 + L1MC4a LINE L1 7607 7493 -315 1754 123 30 4 chr6 34051912 34052180 -155227374 + AluSx SINE Alu 34 308 -4 524 174 43 105 chr6 34052180 34052269 -155227285 + L1MC4a LINE L1 7492 7585 -223 2379 165 55 0 chr6 34052276 34052474 -155227080 - MLT1C LTR MaLR 0 467 281 279 0 0 0 chr6 34052474 34052505 -155227049 + (TG)n Simple_repeat Simple_repeat 2 32 0 2037 103 0 33 chr6 34052505 34052663 -155226891 - AluSx SINE Alu -27 285 140 2164 103 23 0 chr6 34052663 34052965 -155226589 - AluSg SINE Alu -1 309 1 2037 103 0 33 chr6 34052965 34053101 -155226453 - AluSx SINE Alu -172 140 1 2379 165 55 0 chr6 34053101 34053325 -155226229 - MLT1C LTR MaLR -185 282 27 1806 95 56 0 chr6 34053326 34053578 -155225976 - L1PA11 LINE L1 -1 6173 5908 1926 137 3 13 chr6 34053597 34053903 -155225651 - AluSg SINE Alu -7 303 1 2013 128 13 0 chr6 34053906 34054210 -155225344 - AluY SINE Alu -3 308 1 262 122 0 0 chr6 34054237 34054278 -155225276 - MLT1C LTR MaLR -426 41 1 392 258 8 31 chr6 34054297 34054425 -155225129 + L1MC4 LINE L1 7918 8042 0 242 355 78 14 chr6 34054619 34054760 -155224794 - MIR SINE MIR -66 196 47 2316 58 0 14 chr6 34054829 34054988 -155224566 - AluY SINE Alu -20 291 136 2396 78 0 0 chr6 34054988 34055294 -155224260 - AluY SINE Alu -5 306 1 2316 58 0 14 chr6 34055294 34055429 -155224125 - AluY SINE Alu -175 136 1 1475 196 7 11 chr6 34055505 34055780 -155223774 + AluJo SINE Alu 6 279 -33 2240 89 0 25 chr6 34055783 34056099 -155223455 + AluSg SINE Alu 3 310 0 2083 118 0 19 chr6 34056321 34056635 -155222919 - AluSx SINE Alu -4 308 1 204 125 0 0 chr6 34056658 34056690 -155222864 + (A)n Simple_repeat Simple_repeat 1 32 0 2094 131 0 6 chr6 34056797 34057111 -155222443 + AluSx SINE Alu 1 312 0 211 306 14 0 chr6 34057569 34057641 -155221913 - MIR3 SINE MIR -1 207 135 2198 95 10 0 chr6 34058182 34058487 -155221067 - AluSp SINE Alu -5 308 1 477 203 31 61 chr6 34058491 34058604 -155220950 - Charlie2 DNA MER1_type 0 2862 2747 1751 114 21 25 chr6 34058604 34058885 -155220669 + AluSx SINE Alu 1 280 -32 288 70 0 0 chr6 34058888 34058931 -155220623 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 477 203 31 61 chr6 34058931 34058976 -155220578 - Charlie2 DNA MER1_type -117 2745 2705 1523 106 17 13 chr6 34058976 34059211 -155220343 - AluSg/x SINE Alu 0 312 77 2061 111 10 16 chr6 34059211 34059517 -155220037 - AluSx SINE Alu -8 304 1 682 167 9 9 chr6 34059527 34059641 -155219913 - FLAM_C SINE Alu -21 122 9 2160 98 3 7 chr6 34059649 34059954 -155219600 - AluSg SINE Alu -6 304 1 2122 100 0 7 chr6 34059956 34060255 -155219299 - AluSx SINE Alu -15 297 1 2079 122 3 0 chr6 34060257 34060552 -155219002 - AluSx SINE Alu -16 296 1 629 239 161 6 chr6 34060554 34060619 -155218935 - Charlie2 DNA MER1_type -154 2708 2654 1934 112 0 55 chr6 34060619 34060931 -155218623 + AluSg SINE Alu 1 295 -15 629 239 161 6 chr6 34060931 34061195 -155218359 - Charlie2 DNA MER1_type -208 2654 2328 2286 45 0 54 chr6 34061221 34061535 -155218019 - AluY SINE Alu -14 297 1 1402 170 24 114 chr6 34061588 34061713 -155217841 + AluJo SINE Alu 3 138 -174 2375 57 7 0 chr6 34061713 34062010 -155217544 - AluSx SINE Alu -13 299 1 1402 170 24 114 chr6 34062010 34062182 -155217372 + AluJo SINE Alu 138 268 -44 2330 71 7 10 chr6 34062182 34062491 -155217063 - AluSc SINE Alu -1 308 1 1402 170 24 114 chr6 34062491 34062533 -155217021 + AluJo SINE Alu 268 312 0 419 296 107 0 chr6 34062694 34062863 -155216691 - Charlie2 DNA MER1_type -2641 221 35 201 313 12 24 chr6 34065430 34065513 -155214041 + CT-rich Low_complexity Low_complexity 4 85 0 276 100 0 0 chr6 34066950 34066990 -155212564 + (GGA)n Simple_repeat Simple_repeat 2 41 0 268 260 0 0 chr6 34067001 34067074 -155212480 + GA-rich Low_complexity Low_complexity 2 74 0 1296 91 50 59 chr6 34068649 34068869 -155210685 - AluJb SINE Alu -7 305 88 33 0 0 0 chr6 34069409 34069442 -155210112 + GC_rich Low_complexity Low_complexity 1 33 0 254 306 0 35 chr6 34069506 34069650 -155209904 + (CGGGG)n Simple_repeat Simple_repeat 1 139 0 596 225 112 6 chr6 34069868 34070037 -155209517 + MIR SINE MIR 20 206 -56 360 264 7 68 chr6 34073910 34074058 -155205496 + MIR3 SINE MIR 50 188 -20 204 305 156 57 chr6 34075128 34075269 -155204285 - MER5B DNA MER1_type 0 178 24 2117 82 7 4 chr6 34075427 34075744 -155203810 - AluSp SINE Alu 0 321 4 1138 131 0 33 chr6 34075749 34075953 -155203601 - AluSq SINE Alu 0 306 109 240 136 23 0 chr6 34075957 34076001 -155203553 - MER3 DNA MER1_type -163 46 2 645 165 28 60 chr6 34076007 34076189 -155203365 - MER105 DNA DNA -1 203 28 380 230 0 0 chr6 34077378 34077452 -155202102 + L2 LINE L2 3233 3306 -7 246 62 0 0 chr6 34078080 34078112 -155201442 + (TGG)n Simple_repeat Simple_repeat 2 33 0 184 224 0 24 chr6 34078944 34079029 -155200525 + GA-rich Low_complexity Low_complexity 4 86 0 441 54 0 0 chr6 34080386 34080442 -155199112 + (CA)n Simple_repeat Simple_repeat 1 56 0 180 163 0 0 chr6 34080503 34080546 -155199008 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 234 62 0 0 chr6 34080821 34080853 -155198701 + (GA)n Simple_repeat Simple_repeat 1 32 0 363 232 21 35 chr6 34081021 34081163 -155198391 + GA-rich Low_complexity Low_complexity 6 145 0 306 409 39 18 chr6 34081287 34081568 -155197986 + L2 LINE L2 2303 2589 -725 2215 105 3 0 chr6 34081668 34081962 -155197592 - AluSp SINE Alu -18 295 1 320 274 76 38 chr6 34082369 34082526 -155197028 + L2 LINE L2 3128 3290 -23 1618 209 34 59 chr6 34083974 34084081 -155195473 + MLT1C LTR MaLR 1 109 -358 2023 114 3 17 chr6 34084081 34084378 -155195176 + AluSq SINE Alu 1 293 -20 1618 209 34 59 chr6 34084378 34084744 -155194810 + MLT1C LTR MaLR 109 462 -5 317 322 231 30 chr6 34084760 34084913 -155194641 + L3 LINE CR1 727 848 -729 2299 106 0 0 chr6 34084913 34085214 -155194340 + AluSx SINE Alu 1 301 -11 317 322 231 30 chr6 34085214 34085489 -155194065 + L3 LINE CR1 848 1241 -336 273 197 16 134 chr6 34085464 34085591 -155193963 - MIR3 SINE MIR 0 208 97 * 251 292 45 11 chr6 34085602 34085691 -155193863 + L3 LINE CR1 1485 1576 -1 1581 85 163 60 chr6 34086428 34086710 -155192844 - AluSx SINE Alu -1 311 1 849 137 8 23 chr6 34086891 34087022 -155192532 + FLAM_C SINE Alu 3 131 -2 198 322 17 0 chr6 34087254 34087313 -155192241 + L2 LINE L2 3254 3313 0 31 26 0 0 chr6 34087803 34087841 -155191713 + GC_rich Low_complexity Low_complexity 1 38 0 246 62 0 0 chr6 34089032 34089064 -155190490 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 245 0 0 chr6 34089158 34089207 -155190347 + CT-rich Low_complexity Low_complexity 1 49 0 281 282 17 17 chr6 34091792 34091909 -155187645 + (CA)n Simple_repeat Simple_repeat 2 118 0 225 325 12 0 chr6 34092478 34092561 -155186993 + CT-rich Low_complexity Low_complexity 3 86 0 192 77 0 0 chr6 34093268 34093294 -155186260 + (CCG)n Simple_repeat Simple_repeat 3 28 0 234 252 34 34 chr6 34093299 34093418 -155186136 + C-rich Low_complexity Low_complexity 1 119 0 200 247 54 0 chr6 34093473 34093566 -155185988 + (CGCGG)n Simple_repeat Simple_repeat 5 102 0 * 221 239 28 0 chr6 34093521 34093592 -155185962 + (CGG)n Simple_repeat Simple_repeat 1 73 0 307 247 11 22 chr6 34093594 34093683 -155185871 + (CCG)n Simple_repeat Simple_repeat 3 90 0 277 232 0 42 chr6 34094312 34094407 -155185147 + (CA)n Simple_repeat Simple_repeat 2 92 0 275 247 0 26 chr6 34094904 34094981 -155184573 + GA-rich Low_complexity Low_complexity 4 78 0 229 258 16 0 chr6 34096064 34096126 -155183428 + CT-rich Low_complexity Low_complexity 2 64 0 337 314 26 7 chr6 34100582 34100735 -155178819 + CT-rich Low_complexity Low_complexity 4 159 0 333 314 0 38 chr6 34101006 34101191 -155178363 + C-rich Low_complexity Low_complexity 2 179 0 570 112 8 37 chr6 34101296 34101430 -155178124 + (GGA)n Simple_repeat Simple_repeat 1 130 0 245 258 0 15 chr6 34101459 34101525 -155178029 + GA-rich Low_complexity Low_complexity 3 67 0 28 0 0 0 chr6 34105174 34105202 -155174352 + AT_rich Low_complexity Low_complexity 1 28 0 468 288 60 38 chr6 34108345 34108529 -155171025 - MIR SINE MIR -1 261 74 2298 109 0 3 chr6 34109341 34109652 -155169902 - AluSg SINE Alu 0 310 1 22 35 0 0 chr6 34110250 34110279 -155169275 + GC_rich Low_complexity Low_complexity 1 29 0 383 297 0 0 chr6 34110509 34110620 -155168934 + G-rich Low_complexity Low_complexity 1 111 0 441 0 0 0 chr6 34111778 34111827 -155167727 + (CA)n Simple_repeat Simple_repeat 2 50 0 371 170 199 123 chr6 34112224 34112345 -155167209 + L1MC5 LINE L1 6730 6869 -1092 2280 61 24 3 chr6 34112345 34112642 -155166912 - AluY SINE Alu -8 303 1 371 170 199 123 chr6 34112642 34112691 -155166863 + L1MC5 LINE L1 6869 6913 -1048 546 204 68 15 chr6 34112701 34112833 -155166721 + FLAM_C SINE Alu 1 139 -4 618 246 79 9 chr6 34112850 34113078 -155166476 + L1MC5 LINE L1 6971 7214 -747 320 256 152 26 chr6 34113186 34113455 -155166099 + L1MC5 LINE L1 7397 7699 -262 294 282 43 103 chr6 34113629 34113863 -155165691 + L1MEd LINE L1 329 548 -5571 * 673 261 50 12 chr6 34113862 34114103 -155165451 + L1MC4a LINE L1 5613 5862 -1946 1955 172 0 0 chr6 34114103 34114406 -155165148 - AluJb SINE Alu -9 303 1 361 276 57 8 chr6 34115559 34115682 -155163872 - L2 LINE L2 -350 2963 2835 195 312 73 63 chr6 34116889 34117094 -155162460 - L2 LINE L2 -238 3034 2828 770 146 5 137 chr6 34118396 34118546 -155161008 + MER2 DNA MER2_type 1 169 -176 1674 125 12 0 chr6 34118546 34118786 -155160768 - AluSp SINE Alu -29 284 42 2173 101 0 26 chr6 34118787 34119093 -155160461 - AluSq SINE Alu -15 298 1 770 146 5 137 chr6 34119093 34119159 -155160395 + MER2 DNA MER2_type 168 190 -155 3029 151 37 21 chr6 34119159 34119528 -155160026 + Tigger3b DNA MER2_type 1 386 -2642 2344 67 0 13 chr6 34119528 34119828 -155159726 + AluY SINE Alu 1 296 -15 3029 151 37 21 chr6 34119828 34120079 -155159475 + Tigger3b DNA MER2_type 386 631 -600 2342 108 0 0 chr6 34120099 34120405 -155159149 + AluY SINE Alu 1 306 -5 245 149 0 21 chr6 34120411 34120458 -155159096 - LTR56 LTR ERV1 -51 394 349 443 128 86 8 chr6 34120464 34120581 -155158973 + Tigger3b DNA MER2_type 572 697 -535 2400 78 0 20 chr6 34120581 34120887 -155158667 + AluY SINE Alu 1 300 -11 2716 153 49 6 chr6 34121575 34122085 -155157469 + Tigger3b DNA MER2_type 698 1229 -2 2017 104 42 7 chr6 34122136 34122423 -155157131 - AluSx SINE Alu -11 301 5 451 189 0 0 chr6 34122425 34122499 -155157055 + MER2 DNA MER2_type 272 345 0 2313 92 6 19 chr6 34122767 34123083 -155156471 + AluSx SINE Alu 1 312 0 188 259 49 62 chr6 34123788 34123869 -155155685 - L2 LINE L2 -395 2918 2839 2423 100 0 0 chr6 34123937 34124236 -155155318 + AluSg SINE Alu 1 299 -11 2040 110 51 7 chr6 34124256 34124548 -155155006 + AluSx SINE Alu 1 305 -7 2535 57 0 7 chr6 34124551 34124852 -155154702 + AluY SINE Alu 1 299 -12 1009 106 19 50 chr6 34124945 34125106 -155154448 + AluJb SINE Alu 156 311 -1 538 252 87 0 chr6 34125159 34125286 -155154268 - FLAM_A SINE Alu -4 138 1 411 242 118 31 chr6 34125404 34125565 -155153989 + L2 LINE L2 3138 3312 -1 2753 227 172 46 chr6 34126058 34126751 -155152803 + L2 LINE L2 1519 2372 -942 2223 110 0 7 chr6 34126751 34127043 -155152511 + AluSx SINE Alu 1 290 -22 2753 227 172 46 chr6 34127043 34127328 -155152226 + L2 LINE L2 2372 2620 -694 369 130 0 0 chr6 34127330 34127384 -155152170 + MER20 DNA MER1_type 1 54 -165 525 163 10 0 chr6 34127388 34127486 -155152068 - MER20 DNA MER1_type -61 158 60 2336 77 3 0 chr6 34127487 34127784 -155151770 + AluY SINE Alu 1 298 -13 2047 123 3 23 chr6 34127788 34128098 -155151456 + AluJb SINE Alu 2 305 -7 1229 239 125 30 chr6 34128137 34128701 -155150853 + L2 LINE L2 2713 3309 -4 216 291 196 48 chr6 34130462 34130682 -155148872 - MIR3 SINE MIR -12 250 3 23 33 0 0 chr6 34131145 34131175 -155148379 + AT_rich Low_complexity Low_complexity 1 30 0 653 285 131 7 chr6 34131196 34131607 -155147947 + L1M4 LINE L1 3865 4326 -1820 2552 51 0 13 chr6 34131681 34131996 -155147558 + AluY SINE Alu 1 311 0 478 35 0 0 chr6 34131997 34132055 -155147499 + AluSq SINE Alu 134 191 -122 2505 78 7 0 chr6 34132177 34132484 -155147070 + AluSg1 SINE Alu 1 309 0 2119 133 0 10 chr6 34132548 34132848 -155146706 + AluSq SINE Alu 2 298 -15 201 296 0 0 chr6 34132976 34133047 -155146507 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 23 0 0 0 chr6 34133157 34133180 -155146374 + AT_rich Low_complexity Low_complexity 1 23 0 2172 85 78 0 chr6 34133192 34133474 -155146080 - AluY SINE Alu -7 304 1 2260 89 0 0 chr6 34133477 34133757 -155145797 - AluSg SINE Alu -30 280 1 2156 128 10 19 chr6 34133812 34134125 -155145429 - AluSx SINE Alu -2 310 1 22 35 0 0 chr6 34134125 34134154 -155145400 + AT_rich Low_complexity Low_complexity 1 29 0 858 137 0 0 chr6 34134154 34134271 -155145283 - FLAM_C SINE Alu -25 118 2 1362 183 23 108 chr6 34134557 34134956 -155144598 - MLT1A1 LTR MaLR 0 365 1 1627 154 7 32 chr6 34134997 34135277 -155144277 - AluSx SINE Alu -10 302 30 2355 96 0 0 chr6 34135701 34135993 -155143561 + AluSq SINE Alu 1 292 -21 2158 105 7 23 chr6 34135993 34136297 -155143257 + AluSp SINE Alu 1 300 -13 1919 161 28 0 chr6 34136308 34136599 -155142955 + AluJb SINE Alu 1 299 -13 2234 102 6 16 chr6 34136977 34137290 -155142264 + AluSg SINE Alu 1 310 0 291 383 26 0 chr6 34137335 34137450 -155142104 - L2 LINE L2 -39 3233 3116 307 71 0 0 chr6 34137758 34137800 -155141754 + AluJb SINE Alu 66 107 -195 666 274 34 53 chr6 34138010 34138285 -155141269 + MLT1J LTR MaLR 3 340 -171 2474 82 0 22 chr6 34138285 34138601 -155140953 + AluSx SINE Alu 3 311 -1 666 274 34 53 chr6 34138601 34138725 -155140829 + MLT1J LTR MaLR 340 465 -46 548 157 0 0 chr6 34138725 34138808 -155140746 - AluJ/FLAM SINE Alu -228 84 2 849 186 0 0 chr6 34139492 34139632 -155139922 + FLAM_C SINE Alu 1 140 -3 2153 91 11 11 chr6 34139737 34140051 -155139503 + AluSx SINE Alu 1 314 0 1130 135 26 109 chr6 34140053 34140262 -155139292 - LTR51 LTR ERV1 -404 267 83 2441 88 3 3 chr6 34140262 34140570 -155138984 - AluSg SINE Alu -2 308 1 1130 135 26 109 chr6 34140570 34140626 -155138928 - LTR51 LTR ERV1 -588 83 24 623 320 55 33 chr6 34140654 34141073 -155138481 - L2 LINE L2 -550 2764 2337 805 194 0 8 chr6 34141143 34141260 -155138294 + FLAM_C SINE Alu 1 118 -184 192 40 0 0 chr6 34141260 34141285 -155138269 + (CA)n Simple_repeat Simple_repeat 2 26 0 805 194 0 8 chr6 34141285 34141301 -155138253 + FLAM_C SINE Alu 118 133 -169 2233 78 0 7 chr6 34141337 34141619 -155137935 + AluSc SINE Alu 18 297 -12 2212 104 3 0 chr6 34141657 34141946 -155137608 - AluSx SINE Alu -22 290 1 1261 128 0 0 chr6 34142008 34142188 -155137366 - AluSg SINE Alu -12 298 119 703 136 24 32 chr6 34142237 34142362 -155137192 - AluSg SINE Alu -179 131 8 507 114 0 0 chr6 34142362 34142441 -155137113 - AluS SINE Alu -3 308 230 1523 102 0 0 chr6 34142441 34142638 -155136916 - AluSc SINE Alu -112 197 1 1107 148 0 34 chr6 34142640 34142816 -155136738 - AluSg/x SINE Alu -20 292 123 814 159 0 100 chr6 34143150 34143320 -155136234 + FAM SINE Alu 1 153 -32 1149 50 15 23 chr6 34143322 34143605 -155135949 - AluY SINE Alu 0 352 2 3904 115 13 0 chr6 34143652 34144199 -155135355 + MER41A LTR ERV1 1 554 0 2150 111 0 36 chr6 34144215 34144522 -155135032 - AluSq SINE Alu -17 296 1 1766 179 0 23 chr6 34144571 34144656 -155134898 + AluJb SINE Alu 1 86 -226 4786 72 19 84 chr6 34144656 34144930 -155134624 + LTR8 LTR ERV1 1 291 -400 2354 115 0 0 chr6 34144930 34145243 -155134311 + AluSq SINE Alu 1 313 0 4786 72 19 84 chr6 34145243 34145535 -155134019 + LTR8 LTR ERV1 291 511 -180 2168 124 20 0 chr6 34145535 34145841 -155133713 + AluSx SINE Alu 1 312 0 4786 72 19 84 chr6 34145841 34146010 -155133544 + LTR8 LTR ERV1 511 689 -2 1766 179 0 23 chr6 34146010 34146225 -155133329 + AluJb SINE Alu 86 294 -18 2040 196 141 44 chr6 34146513 34146589 -155132965 - LTR29 LTR ERV1 0 622 555 1759 141 69 0 chr6 34146589 34146851 -155132703 + AluSx SINE Alu 1 280 -32 228 35 0 0 chr6 34146854 34146883 -155132671 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2040 196 141 44 chr6 34146883 34147369 -155132185 - LTR29 LTR ERV1 -68 554 1 2340 100 10 0 chr6 34147412 34147713 -155131841 - AluSx SINE Alu -8 304 1 2110 101 0 7 chr6 34147715 34147992 -155131562 - AluSx SINE Alu -14 298 24 777 107 0 107 chr6 34147997 34148146 -155131408 - FLAM_C SINE Alu 0 133 1 1978 209 58 7 chr6 34148676 34149121 -155130433 - MER21B LTR ERV1 -49 814 347 1956 149 20 0 chr6 34149143 34149439 -155130115 - AluSq SINE Alu -11 302 1 464 132 0 0 chr6 34149465 34149533 -155130021 + AluJ/FRAM SINE Alu 231 298 -14 2246 98 11 0 chr6 34149542 34149828 -155129726 + AluSx SINE Alu 1 289 -23 1293 120 77 0 chr6 34149862 34150045 -155129509 - AluSx SINE Alu -115 197 1 1790 167 0 14 chr6 34150117 34150438 -155129116 - AluJb SINE Alu 0 317 1 1547 186 54 3 chr6 34150441 34150737 -155128817 - AluJo SINE Alu -1 311 1 778 115 26 94 chr6 34150756 34150901 -155128653 - L1MA8 LINE L1 -43 6248 6095 207 0 0 0 chr6 34150901 34150924 -155128630 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 2332 69 7 14 chr6 34150926 34151217 -155128337 - AluY SINE Alu -22 289 1 2169 122 0 0 chr6 34151219 34151514 -155128040 - AluSx SINE Alu -12 300 6 778 115 26 94 chr6 34151514 34151553 -155128001 - L1MA8 LINE L1 -198 6093 6071 1044 132 0 136 chr6 34151705 34151834 -155127720 + MER3 DNA MER1_type 1 83 -126 2270 75 18 0 chr6 34151834 34152113 -155127441 - AluSc SINE Alu -25 284 1 1044 132 0 136 chr6 34152113 34152225 -155127329 + MER3 DNA MER1_type 83 209 0 476 273 87 71 chr6 34152230 34152598 -155126956 - L1ME LINE L1 -358 5804 5423 1961 124 6 59 chr6 34152598 34152963 -155126591 - AluSg SINE Alu 0 310 1 476 273 87 71 chr6 34152963 34153132 -155126422 - L1ME LINE L1 -739 5423 5258 2515 70 0 10 chr6 34153260 34153573 -155125981 + AluY SINE Alu 1 310 -1 2339 89 0 16 chr6 34153579 34153882 -155125672 - AluSq SINE Alu -15 298 1 2299 172 21 38 chr6 34153884 34154307 -155125247 + MER67A LTR ERV1 80 498 -45 2097 123 3 0 chr6 34154307 34154627 -155124927 - AluSx SINE Alu 0 321 1 2299 172 21 38 chr6 34154627 34154671 -155124883 + MER67A LTR ERV1 498 541 -2 1302 145 0 0 chr6 34154672 34154879 -155124675 + L1MB5 LINE L1 5618 5824 -360 938 161 0 0 chr6 34154879 34155016 -155124538 + AluJb SINE Alu 166 302 -10 669 140 0 35 chr6 34155045 34155159 -155124395 + AluJ SINE Alu 25 134 -178 1012 182 11 6 chr6 34156796 34156977 -155122577 + AluJ SINE Alu 120 301 -11 366 120 0 67 chr6 34156977 34157052 -155122502 + L1MB5 LINE L1 5819 5888 -286 243 311 8 0 chr6 34157128 34157247 -155122307 - L1 LINE L1 -2381 3765 3646 1953 123 0 53 chr6 34157249 34157550 -155122004 - AluSx SINE Alu -19 293 9 2427 92 0 16 chr6 34157645 34157960 -155121594 - AluSg SINE Alu 0 310 1 474 331 92 21 chr6 34158068 34158349 -155121205 + L2 LINE L2 2971 3271 -1 2600 58 0 3 chr6 34158753 34159063 -155120491 - AluY SINE Alu -2 309 1 203 250 33 50 chr6 34159954 34160014 -155119540 + MIR SINE MIR 3 61 -201 280 146 0 0 chr6 34160023 34160064 -155119490 + MER57A LTR ERV1 295 335 -68 2064 126 33 0 chr6 34160151 34160453 -155119101 + AluSq SINE Alu 1 312 -1 570 249 103 5 chr6 34160466 34160651 -155118903 - MLT1L LTR MaLR -5 610 408 232 238 75 25 chr6 34161776 34161856 -155117698 - MIR SINE MIR -86 176 93 2360 89 33 0 chr6 34162330 34162632 -155116922 - AluSx SINE Alu 0 312 1 476 278 18 85 chr6 34162991 34163112 -155116442 - MIR SINE MIR 0 262 161 1945 159 23 7 chr6 34163112 34163414 -155116140 - AluJo SINE Alu -5 307 1 476 278 18 85 chr6 34163414 34163515 -155116039 - MIR SINE MIR -101 161 55 4567 83 18 32 chr6 34163515 34164139 -155115415 + SVA Other Other 772 1386 0 1535 100 62 147 chr6 34164293 34164633 -155114921 - AluYb8 SINE Alu -7 311 1 1602 172 115 41 chr6 34165319 34165754 -155113800 + LTR10A LTR ERV1 82 548 -61 618 267 42 6 chr6 34165763 34165928 -155113626 + LTR10A-int LTR ERV1 1 171 -6478 1693 100 15 92 chr6 34165947 34166283 -155113271 - LTR14B LTR ERVK -2 606 54 16118 63 3 16 chr6 34166292 34166432 -155113122 + Harlequin LTR ERV1 2035 2175 -4721 2292 94 0 26 chr6 34166432 34166739 -155112815 + AluSx SINE Alu 1 299 -13 16118 63 3 16 chr6 34166739 34166929 -155112625 + Harlequin LTR ERV1 2175 2366 -4530 2387 90 3 3 chr6 34166929 34167229 -155112325 + AluSp SINE Alu 1 300 -13 16118 63 3 16 chr6 34167229 34167254 -155112300 + Harlequin LTR ERV1 2366 2390 -4506 2557 74 3 0 chr6 34167254 34167564 -155111990 + AluY SINE Alu 1 311 0 16118 63 3 16 chr6 34167564 34167641 -155111913 + Harlequin LTR ERV1 2390 2466 -4430 2345 82 0 3 chr6 34167641 34167935 -155111619 + AluSx SINE Alu 1 293 -19 16118 63 3 16 chr6 34167935 34169650 -155109904 + Harlequin LTR ERV1 2466 4157 -2739 1416 176 186 23 chr6 34169730 34170117 -155109437 - LTR7 LTR ERV1 0 450 1 1305 98 37 0 chr6 34170117 34170332 -155109222 - HERVH LTR ERV1 0 7713 7491 2271 105 0 26 chr6 34170333 34170646 -155108908 + AluSx SINE Alu 2 306 -6 416 145 0 0 chr6 34270673 34270735 -155008819 - AluS SINE Alu -256 62 1 1092 140 73 0 chr6 34270738 34270917 -155008637 - AluSp SINE Alu -1 312 121 224 261 197 92 chr6 34270961 34271103 -155008451 + MIR3 SINE MIR 38 194 -14 229 308 0 0 chr6 34272519 34272584 -155006970 + CT-rich Low_complexity Low_complexity 3 67 0 25 51 0 0 chr6 34273329 34273368 -155006186 + AT_rich Low_complexity Low_complexity 1 39 0 1816 161 41 3 chr6 34273580 34273872 -155005682 + AluJb SINE Alu 1 303 -9 1138 145 0 0 chr6 34274088 34274240 -155005314 + FAM SINE Alu 12 163 -22 206 271 0 0 chr6 34274916 34274964 -155004590 + C-rich Low_complexity Low_complexity 1 48 0 1797 181 0 3 chr6 34275338 34275626 -155003928 + AluJo SINE Alu 1 287 -25 1766 142 0 51 chr6 34275754 34276049 -155003505 + AluJo SINE Alu 9 288 -24 241 220 0 0 chr6 34278947 34279031 -155000523 + C-rich Low_complexity Low_complexity 1 84 0 2641 47 0 0 chr6 34279825 34280124 -154999430 - AluY SINE Alu -11 300 2 1749 188 51 30 chr6 34280377 34280770 -154998784 + Tigger1 DNA MER2_type 1 401 -2017 1561 163 119 41 chr6 34280765 34280961 -154998593 + Tigger1 DNA MER2_type 2029 2208 -210 * 2193 108 4 0 chr6 34280961 34281239 -154998315 + AluSx SINE Alu 1 279 -33 1561 163 119 41 chr6 34281239 34281404 -154998150 + Tigger1 DNA MER2_type 2208 2418 0 2455 92 0 9 chr6 34282258 34282573 -154996981 + AluSx SINE Alu 1 312 0 1921 154 0 0 chr6 34282604 34282884 -154996670 - AluSx SINE Alu -32 280 1 2540 70 0 10 chr6 34283208 34283520 -154996034 + AluSc SINE Alu 1 309 0 835 190 87 88 chr6 34283606 34283681 -154995873 + MSTD LTR MaLR 1 75 -321 2524 86 0 0 chr6 34283681 34283982 -154995572 - AluSq SINE Alu -12 301 1 835 190 87 88 chr6 34283982 34284196 -154995358 + MSTD LTR MaLR 75 347 -49 1938 148 7 3 chr6 34284196 34284494 -154995060 + AluJb SINE Alu 2 300 -12 835 190 87 88 chr6 34284494 34284544 -154995010 + MSTD LTR MaLR 347 396 0 4910 201 35 47 chr6 34284975 34285154 -154994400 - L1M4 LINE L1 -1194 4952 4772 3611 126 34 50 chr6 34285154 34285734 -154993820 - L1MA8 LINE L1 -4 6287 5720 572 197 90 0 chr6 34285734 34285856 -154993698 + FLAM_A SINE Alu 1 133 0 3611 126 34 50 chr6 34285856 34286022 -154993532 - L1MA8 LINE L1 -571 5720 5553 4910 201 35 47 chr6 34286022 34286427 -154993127 - L1M4 LINE L1 -1374 4772 4364 2408 92 0 0 chr6 34286427 34286720 -154992834 + AluSg SINE Alu 1 293 -17 4910 201 35 47 chr6 34286720 34287490 -154992064 - L1M4 LINE L1 -1782 4364 3613 2430 82 3 3 chr6 34287909 34288212 -154991342 - AluSx SINE Alu -7 305 3 2335 79 7 3 chr6 34288400 34288692 -154990862 - AluSp SINE Alu -20 293 1 408 252 50 0 chr6 34288910 34289069 -154990485 - L1M4 LINE L1 -2540 3606 3440 607 161 116 9 chr6 34289076 34289188 -154990366 - FLAM_C SINE Alu -8 125 2 2174 90 0 0 chr6 34289234 34289511 -154990043 + AluSx SINE Alu 36 312 0 2015 184 179 56 chr6 34289525 34290006 -154989548 - L1MD3 LINE L1 -25 7970 7549 377 226 22 12 chr6 34290006 34290098 -154989456 - MLT1F1 LTR MaLR -443 124 39 2015 184 179 56 chr6 34290098 34290507 -154989047 - L1MD3 LINE L1 -446 7549 6698 2454 99 0 3 chr6 34290604 34290917 -154988637 + AluSx SINE Alu 1 312 0 312 216 91 0 chr6 34292191 34292279 -154987275 + L2 LINE L2 2959 3054 -259 453 35 0 0 chr6 34292279 34292337 -154987217 - AluY SINE Alu -259 59 2 2776 126 8 33 chr6 34292376 34292763 -154986791 - L1PA15 LINE L1 -1 6164 5769 240 35 0 0 chr6 34292763 34292792 -154986762 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2463 64 0 0 chr6 34292792 34293075 -154986479 - AluY SINE Alu -28 283 1 2776 126 8 33 chr6 34293075 34293169 -154986385 - L1PA15 LINE L1 -394 5771 5694 606 333 85 48 chr6 34293215 34293699 -154985855 - L1M4 LINE L1 -2208 3938 3437 781 306 87 5 chr6 34293817 34294186 -154985368 - ERVL LTR ERVL -1490 4274 3876 414 282 110 38 chr6 34294485 34294694 -154984860 - L1ME3A LINE L1 -15 6155 5932 2286 106 3 0 chr6 34294809 34295111 -154984443 - AluSp SINE Alu -10 303 1 745 262 22 65 chr6 34295112 34295467 -154984087 + L1MC5 LINE L1 7103 7442 -519 2610 70 0 3 chr6 34295506 34295818 -154983736 + AluY SINE Alu 1 311 0 203 0 0 36 chr6 34296017 34296045 -154983509 + (TTA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 34296942 34296965 -154982589 + AT_rich Low_complexity Low_complexity 1 23 0 195 114 0 0 chr6 34296993 34297028 -154982526 + (TATAA)n Simple_repeat Simple_repeat 3 37 0 2162 145 0 0 chr6 34297028 34297339 -154982215 + AluSx SINE Alu 1 311 -1 2345 151 25 10 chr6 34297383 34297786 -154981768 - LTR3 LTR ERVK -2 430 22 3258 201 63 65 chr6 34302945 34303309 -154976245 + L1MB2 LINE L1 4899 5262 -909 2570 80 0 0 chr6 34303309 34303620 -154975934 + AluY SINE Alu 1 311 0 3258 201 63 65 chr6 34303620 34303893 -154975661 + L1MB2 LINE L1 5262 5534 -637 327 25 0 0 chr6 34303893 34303933 -154975621 + (CA)n Simple_repeat Simple_repeat 1 40 0 3258 201 63 65 chr6 34303933 34304560 -154974994 + L1MB2 LINE L1 5534 6167 -4 * 9591 141 20 12 chr6 34304554 34305530 -154974024 + L1MA3 LINE L1 3551 4517 -1788 2298 107 3 3 chr6 34305530 34305829 -154973725 - AluSp SINE Alu -14 299 1 9591 141 20 12 chr6 34305829 34307583 -154971971 + L1MA3 LINE L1 4517 6305 0 2753 33 0 0 chr6 34309117 34309423 -154970131 + AluYb8 SINE Alu 1 306 -12 1362 43 25 0 chr6 34309423 34309585 -154969969 + AluY SINE Alu 133 298 -13 751 79 0 0 chr6 34311240 34311341 -154968213 + HY3 scRNA scRNA 1 101 0 2474 78 3 3 chr6 34311366 34311675 -154967879 + AluY SINE Alu 3 311 0 479 161 9 54 chr6 34311684 34311796 -154967758 + L1MB7 LINE L1 6061 6167 -17 707 246 29 11 chr6 34311876 34312051 -154967503 + MER5B DNA MER1_type 1 178 0 1053 160 11 6 chr6 34312110 34312285 -154967269 - FRAM SINE Alu 0 176 1 212 321 0 0 chr6 34312309 34312362 -154967192 + L2 LINE L2 3142 3194 -78 2531 59 3 0 chr6 34313176 34313480 -154966074 - AluSp SINE Alu -8 305 1 203 303 0 45 chr6 34314170 34314259 -154965295 + GA-rich Low_complexity Low_complexity 2 86 0 392 243 32 119 chr6 34314295 34314513 -154965041 - L1MC4 LINE L1 -65 7977 7779 464 312 1 2 chr6 34314523 34314672 -154964882 - L1ME1 LINE L1 0 6178 6027 288 93 23 0 chr6 34314770 34314813 -154964741 - Alu SINE Alu -264 44 1 667 226 147 38 chr6 34314815 34315212 -154964342 - L2 LINE L2 -601 2713 2194 2147 121 0 26 chr6 34315781 34316088 -154963466 - AluJo SINE Alu -13 299 1 2418 92 0 13 chr6 34316129 34316443 -154963111 + AluY SINE Alu 1 310 -1 2311 94 0 0 chr6 34316805 34317092 -154962462 + AluSq SINE Alu 2 288 -25 2092 133 7 3 chr6 34317538 34317831 -154961723 - AluSg SINE Alu -14 296 3 2123 132 17 0 chr6 34317833 34318129 -154961425 - AluSx SINE Alu -11 301 1 342 328 221 5 chr6 34318390 34318838 -154960716 + L2 LINE L2 1795 2339 -975 313 254 172 0 chr6 34318884 34319006 -154960548 + L2 LINE L2 3150 3292 -21 1990 122 16 36 chr6 34319006 34319309 -154960245 - AluSx SINE Alu -15 297 1 2524 67 0 3 chr6 34323304 34323604 -154955950 + AluY SINE Alu 1 299 -12 1929 84 3 133 chr6 34324752 34325097 -154954457 + AluSg SINE Alu 1 300 0 2404 77 0 6 chr6 34325172 34325484 -154954070 + AluSx SINE Alu 1 310 -2 451 323 63 36 chr6 34325632 34325887 -154953667 - L1ME1 LINE L1 -117 6004 5742 233 269 220 29 chr6 34325921 34326271 -154953283 - L1ME1 LINE L1 -773 5373 5209 1685 142 13 33 chr6 34326283 34326586 -154952968 - AluJo SINE Alu -15 297 1 2207 108 0 0 chr6 34326750 34327056 -154952498 + AluSg1 SINE Alu 1 306 -3 1972 110 30 20 chr6 34327372 34327671 -154951883 + AluSx SINE Alu 1 302 -10 2353 75 0 31 chr6 34327707 34328028 -154951526 + AluY SINE Alu 1 311 0 1993 78 0 57 chr6 34328124 34328466 -154951088 + AluSc SINE Alu 1 325 0 2014 111 0 80 chr6 34328482 34328614 -154950940 + AluSx SINE Alu 5 146 -166 2112 118 0 10 chr6 34328614 34328927 -154950627 + AluSx SINE Alu 1 310 -2 2014 111 0 80 chr6 34328927 34329118 -154950436 + AluSx SINE Alu 146 302 -10 304 267 27 59 chr6 34329195 34329374 -154950180 + MIR SINE MIR 7 173 -68 1714 171 7 3 chr6 34329389 34329693 -154949861 + AluJo SINE Alu 5 309 -3 2196 94 13 0 chr6 34329725 34330033 -154949521 + AluSp SINE Alu 1 312 -1 2120 118 0 3 chr6 34330494 34330791 -154948763 - AluSg SINE Alu -14 296 1 964 263 44 22 chr6 34330817 34331137 -154948417 - MER46C DNA MER2_type -11 327 1 2011 141 10 0 chr6 34331159 34331464 -154948090 + AluSq SINE Alu 1 308 -5 356 195 96 188 chr6 34331479 34331626 -154947928 - MIR SINE MIR 0 262 152 762 230 143 4 chr6 34331626 34331856 -154947698 + MIR SINE MIR 1 262 0 356 195 96 188 chr6 34331856 34331990 -154947564 - MIR SINE MIR -110 152 7 567 265 51 25 chr6 34335602 34335798 -154943756 + MIR SINE MIR 49 249 -13 2183 116 0 0 chr6 34336297 34336598 -154942956 - AluSp SINE Alu -12 301 1 486 281 85 35 chr6 34336803 34336841 -154942713 + L2 LINE L2 3104 3139 -174 1441 169 68 0 chr6 34336841 34337107 -154942447 - AluJo SINE Alu -24 288 5 486 281 85 35 chr6 34337107 34337267 -154942287 + L2 LINE L2 3139 3312 -1 214 349 167 0 chr6 34337438 34337564 -154941990 + MIR SINE MIR 52 198 -64 1907 83 79 4 chr6 34337743 34338020 -154941534 + AluSx SINE Alu 1 298 -14 310 306 56 61 chr6 34339732 34339928 -154939626 - L1MDb LINE L1 -5069 1340 1146 358 152 0 23 chr6 34340481 34340686 -154938868 + AluJ SINE Alu 1 266 -36 1866 164 0 3 chr6 34342238 34342531 -154937023 + AluSx SINE Alu 7 298 -14 324 332 88 27 chr6 34342534 34342624 -154936930 - L1MC4a LINE L1 -399 7409 7326 2045 113 10 10 chr6 34342624 34342934 -154936620 - AluSx SINE Alu -2 310 1 324 332 88 27 chr6 34342934 34343138 -154936416 - L1MC4a LINE L1 -482 7326 7097 940 98 0 0 chr6 34343237 34343370 -154936184 - AluSg/x SINE Alu -5 305 173 1969 149 0 0 chr6 34343665 34343961 -154935593 - AluSx SINE Alu -16 296 1 2269 91 0 0 chr6 34344007 34344305 -154935249 + AluSg SINE Alu 1 298 -12 2303 74 24 0 chr6 34344578 34344875 -154934679 + AluSq SINE Alu 1 304 -9 427 327 152 0 chr6 34344922 34345133 -154934421 - L2 LINE L2 -847 2467 2225 2091 113 10 0 chr6 34345202 34345495 -154934059 - AluSx SINE Alu -16 296 1 2237 70 10 10 chr6 34346100 34346422 -154933132 + AluY SINE Alu 1 311 0 1925 132 0 38 chr6 34346468 34346786 -154932768 + AluSx SINE Alu 1 306 -6 2178 82 0 0 chr6 34346822 34347102 -154932452 + AluSq SINE Alu 1 280 -33 396 0 0 0 chr6 34347102 34347146 -154932408 + (CA)n Simple_repeat Simple_repeat 1 44 0 2304 81 3 0 chr6 34347161 34347459 -154932095 + AluY SINE Alu 1 299 -12 2143 95 34 0 chr6 34348096 34348390 -154931164 - AluSx SINE Alu -8 304 1 427 298 51 6 chr6 34349341 34349499 -154930055 - MIR3 SINE MIR -29 179 15 181 283 123 28 chr6 34349752 34349858 -154929696 + L3 LINE CR1 1353 1468 -109 220 289 39 70 chr6 34350567 34350664 -154928890 + L2 LINE L2 3189 3283 -30 1903 160 0 3 chr6 34350664 34350976 -154928578 + AluSx SINE Alu 1 311 -1 220 289 39 70 chr6 34350976 34351006 -154928548 + L2 LINE L2 3283 3312 -1 2172 131 45 70 chr6 34351068 34351511 -154928043 + MSTB1 LTR MaLR 1 432 0 1976 128 0 17 chr6 34351539 34351835 -154927719 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 34351837 34351880 -154927674 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 291 55 9 chr6 34352108 34352218 -154927336 - MIR SINE MIR -56 206 92 2274 95 0 0 chr6 34352234 34352538 -154927016 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 34352612 34352642 -154926912 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 34353629 34353699 -154925855 + MIR SINE MIR 189 256 -6 252 245 223 0 chr6 34353962 34354056 -154925498 - L2 LINE L2 0 3313 3199 423 38 0 0 chr6 34354058 34354111 -154925443 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr6 34354146 34354167 -154925387 + (TA)n Simple_repeat Simple_repeat 1 21 0 2261 109 0 0 chr6 34355766 34356079 -154923475 - AluSq SINE Alu 0 313 1 804 178 70 6 chr6 34356108 34356265 -154923289 + L1M1 LINE L1 509 675 -6890 387 0 0 0 chr6 34357370 34357413 -154922141 + (TG)n Simple_repeat Simple_repeat 1 43 0 565 246 74 55 chr6 34359915 34360080 -154919474 + MIR SINE MIR 2 162 -100 2351 80 7 0 chr6 34360080 34360380 -154919174 - AluSx SINE Alu -9 303 2 565 246 74 55 chr6 34360380 34360412 -154919142 + MIR SINE MIR 162 192 -70 1661 124 23 12 chr6 34360412 34360670 -154918884 + AluSx SINE Alu 35 295 -17 565 246 74 55 chr6 34360670 34360727 -154918827 + MIR SINE MIR 192 262 0 2213 89 7 0 chr6 34361619 34361911 -154917643 + AluSx SINE Alu 1 294 -18 226 258 68 98 chr6 34366700 34366832 -154912722 - L2 LINE L2 -213 3059 2932 260 356 166 5 chr6 34367017 34367438 -154912116 - L2 LINE L2 -604 2710 2222 2367 61 3 0 chr6 34367594 34367890 -154911664 + AluY SINE Alu 1 297 -14 224 159 23 0 chr6 34367984 34368028 -154911526 - MIR SINE MIR -133 75 31 982 123 0 26 chr6 34370089 34370244 -154909310 + AluJb SINE Alu 152 302 -10 218 301 129 0 chr6 34370246 34370339 -154909215 + MIR SINE MIR 158 262 0 2107 101 40 0 chr6 34370346 34370643 -154908911 - AluSc SINE Alu 0 309 1 372 311 71 36 chr6 34373233 34373381 -154906173 - MIR SINE MIR -3 259 101 2278 92 7 0 chr6 34373381 34373684 -154905870 + AluSx SINE Alu 1 305 -7 372 311 71 36 chr6 34373684 34373731 -154905823 - MIR SINE MIR -161 101 57 1014 140 190 188 chr6 34375748 34375952 -154903602 + L1MD3 LINE L1 7348 7550 -445 2208 95 7 0 chr6 34375952 34376248 -154903306 - AluSp SINE Alu -14 299 2 1014 140 190 188 chr6 34376248 34376276 -154903278 + L1MD3 LINE L1 7550 7576 -419 1589 195 0 20 chr6 34376276 34376579 -154902975 - AluJo SINE Alu -15 297 1 1670 176 21 0 chr6 34376585 34376764 -154902790 - AluJb SINE Alu -10 302 113 230 0 33 0 chr6 34376764 34376794 -154902760 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1670 176 21 0 chr6 34376794 34376904 -154902650 - AluJb SINE Alu -199 113 7 1014 140 190 188 chr6 34376904 34377222 -154902332 + L1MD3 LINE L1 7580 7994 -1 324 0 0 0 chr6 34377227 34377263 -154902291 + (CA)n Simple_repeat Simple_repeat 2 37 0 256 234 0 0 chr6 34378097 34378144 -154901410 + Charlie1 DNA MER1_type 23 69 -2692 1548 161 74 37 chr6 34378145 34378549 -154901005 + Charlie1 DNA MER1_type 2343 2761 0 2163 99 0 0 chr6 34379971 34380263 -154899291 - AluY SINE Alu -19 292 1 444 19 0 0 chr6 34381335 34381388 -154898166 + (TG)n Simple_repeat Simple_repeat 1 53 0 205 290 10 40 chr6 34382115 34382215 -154897339 + CT-rich Low_complexity Low_complexity 2 98 0 1173 170 0 16 chr6 34383385 34383522 -154896032 + AluSx SINE Alu 1 136 -176 2036 99 3 78 chr6 34383522 34383658 -154895896 + AluSx SINE Alu 1 146 -166 2253 94 0 0 chr6 34383658 34383955 -154895599 + AluSc SINE Alu 1 297 -12 2036 99 3 78 chr6 34383955 34384152 -154895402 + AluSx SINE Alu 146 309 -3 1173 170 0 16 chr6 34384152 34384208 -154895346 + AluSx SINE Alu 136 191 -121 605 56 0 0 chr6 34384208 34384280 -154895274 + AluSc SINE Alu 57 128 -181 2128 113 3 0 chr6 34384280 34384572 -154894982 - AluSp SINE Alu -20 293 1 248 0 0 30 chr6 34384573 34384606 -154894948 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 818 177 0 0 chr6 34384731 34384855 -154894699 + FLAM_C SINE Alu 2 125 -8 1265 141 0 5 chr6 34384861 34385052 -154894502 + AluSq SINE Alu 6 195 -118 1935 94 0 8 chr6 34386689 34386955 -154892599 + AluSx SINE Alu 49 312 0 27 0 0 0 chr6 34387241 34387268 -154892286 + AT_rich Low_complexity Low_complexity 1 27 0 267 246 144 0 chr6 34387307 34387425 -154892129 + L1ME LINE L1 5753 5887 -283 634 223 41 0 chr6 34387426 34387547 -154892007 + AluJo/FLAM SINE Alu 1 126 -176 2161 93 0 0 chr6 34387547 34387866 -154891688 + AluSc SINE Alu 1 319 0 2253 106 0 0 chr6 34387876 34388187 -154891367 + AluSp SINE Alu 1 311 -2 1831 127 57 13 chr6 34388194 34388493 -154891061 + AluJb SINE Alu 1 312 0 246 267 40 10 chr6 34388581 34388682 -154890872 - L1ME2 LINE L1 -215 5949 5846 1394 136 66 73 chr6 34388809 34389111 -154890443 - AluJo SINE Alu 0 312 13 514 133 36 0 chr6 34389111 34389194 -154890360 - AluJ/FLAM SINE Alu -225 87 2 2152 97 0 3 chr6 34389203 34389502 -154890052 - AluSx SINE Alu -14 298 1 311 327 73 0 chr6 34389516 34389626 -154889928 - L1M4 LINE L1 -1667 4479 4362 875 161 0 8 chr6 34392463 34392593 -154886961 - FLAM_C SINE Alu -3 130 2 619 256 52 56 chr6 34392599 34392785 -154886769 + L1ME3A LINE L1 5587 5773 -397 2247 95 0 0 chr6 34392785 34393079 -154886475 + AluSg SINE Alu 1 294 -16 619 256 52 56 chr6 34393079 34393161 -154886393 + L1ME3A LINE L1 5773 5854 -316 1979 140 0 13 chr6 34393161 34393469 -154886085 + AluSx SINE Alu 1 304 -8 1002 179 0 0 chr6 34393469 34393631 -154885923 + AluSg/x SINE Alu 132 293 -17 365 250 81 128 chr6 34393632 34393774 -154885780 + L1ME3A LINE L1 5843 5990 -180 2476 45 0 10 chr6 34393774 34394083 -154885471 - AluY SINE Alu -4 307 2 365 250 81 128 chr6 34394083 34394284 -154885270 + L1ME3A LINE L1 5990 6170 0 303 248 103 8 chr6 34394415 34394532 -154885022 + L2 LINE L2 2994 3121 -192 1327 107 0 15 chr6 34394540 34394736 -154884818 + AluSq SINE Alu 121 313 0 378 186 12 0 chr6 34395004 34395090 -154884464 - HsTC2 DNA Tc2 -1811 87 1 328 342 40 13 chr6 34395241 34395390 -154884164 + L2 LINE L2 3118 3270 -43 2221 102 3 3 chr6 34396548 34396861 -154882693 - AluSq SINE Alu 0 313 1 1938 157 7 10 chr6 34396861 34397030 -154882524 - AluSx SINE Alu -8 304 135 2425 54 3 0 chr6 34397030 34397328 -154882226 - AluY SINE Alu -12 299 1 1938 157 7 10 chr6 34397328 34397463 -154882091 - AluSx SINE Alu -177 135 1 2239 100 3 0 chr6 34397470 34397770 -154881784 - AluSp SINE Alu -12 301 1 490 330 39 11 chr6 34398132 34398311 -154881243 - MIR SINE MIR -32 230 47 2359 68 6 10 chr6 34398521 34398832 -154880722 + AluY SINE Alu 1 310 -1 1919 143 0 7 chr6 34398866 34399160 -154880394 + AluJo SINE Alu 6 297 -15 249 285 109 80 chr6 34400570 34400707 -154878847 + MIR SINE MIR 108 248 -14 617 227 87 13 chr6 34401922 34402072 -154877482 - MIR SINE MIR -73 189 29 299 290 56 19 chr6 34402093 34402200 -154877354 + MIR SINE MIR 17 127 -81 335 273 93 25 chr6 34406844 34407005 -154872549 - L3 LINE CR1 -131 1446 1275 1957 150 0 3 chr6 34407027 34407327 -154872227 - AluSx SINE Alu -13 299 1 222 37 0 0 chr6 34407401 34407428 -154872126 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1708 122 8 4 chr6 34407436 34407690 -154871864 - AluSx SINE Alu -13 299 45 2560 40 0 0 chr6 34407697 34408000 -154871554 - AluY SINE Alu -8 303 1 1782 164 0 22 chr6 34408488 34408799 -154870755 + AluJb SINE Alu 1 304 -8 294 125 0 0 chr6 34409573 34409621 -154869933 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 2482 62 0 0 chr6 34410410 34410719 -154868835 - AluSc SINE Alu 0 309 1 2116 104 3 10 chr6 34410829 34411137 -154868417 - AluSx SINE Alu -6 306 1 990 80 0 15 chr6 34411137 34411274 -154868280 - AluSq/x SINE Alu -177 135 1 359 289 98 41 chr6 34412209 34412475 -154867079 + L2 LINE L2 2473 2753 -561 293 262 272 0 chr6 34412531 34412634 -154866920 + L2 LINE L2 3179 3309 -4 2236 89 3 0 chr6 34413152 34413454 -154866100 - AluSx SINE Alu -9 303 1 305 360 143 0 chr6 34413457 34413604 -154865950 + L3 LINE CR1 587 754 -823 2007 94 39 3 chr6 34414237 34414523 -154865031 - AluSx SINE Alu -16 296 1 245 391 103 0 chr6 34414712 34414955 -154864599 + L2 LINE L2 2042 2309 -1005 520 207 291 6 chr6 34415030 34415209 -154864345 - MIR SINE MIR -21 241 12 384 294 84 70 chr6 34415323 34415680 -154863874 - L1MC4a LINE L1 -1764 6044 5683 1944 107 18 7 chr6 34416861 34417142 -154862412 - AluSx SINE Alu -21 291 8 531 243 137 44 chr6 34417463 34417689 -154861865 + L1ME3A LINE L1 5896 6142 -28 693 171 51 0 chr6 34417728 34417845 -154861709 + FLAM_A SINE Alu 4 126 -7 2070 94 13 20 chr6 34418472 34418771 -154860783 - AluSg SINE Alu -11 299 3 2074 112 10 0 chr6 34418773 34419069 -154860485 - AluSp SINE Alu -14 299 1 2263 96 3 0 chr6 34419303 34419606 -154859948 - AluSp SINE Alu -8 305 2 2183 100 0 0 chr6 34419946 34420237 -154859317 - AluSx SINE Alu -21 291 1 2213 91 0 3 chr6 34420477 34420773 -154858781 + AluSg SINE Alu 1 295 -15 1674 171 32 0 chr6 34421546 34421827 -154857727 - AluJb SINE Alu -22 290 1 218 213 33 0 chr6 34423532 34423593 -154855961 - MIR SINE MIR -120 142 80 2255 105 0 0 chr6 34425782 34426086 -154853468 + AluSx SINE Alu 1 304 -8 200 356 0 0 chr6 34426087 34426146 -154853408 - MIR SINE MIR -105 103 45 604 262 219 0 chr6 34429488 34429698 -154849856 + MIR SINE MIR 3 258 -4 723 107 18 27 chr6 34429814 34429926 -154849628 - HY1 scRNA scRNA -1 111 1 711 116 0 78 chr6 34429968 34430097 -154849457 - AluSg/x SINE Alu -5 304 186 1023 130 56 6 chr6 34430109 34430270 -154849284 + AluSg/x SINE Alu 134 302 -10 687 142 0 9 chr6 34430277 34430383 -154849171 - FLAM_C SINE Alu -38 105 1 2258 93 3 0 chr6 34431499 34431799 -154847755 - AluSp SINE Alu -12 301 1 2413 74 0 0 chr6 34436061 34436359 -154843195 - AluY SINE Alu -13 298 1 232 381 42 36 chr6 34437614 34437782 -154841772 - L2 LINE L2 0 3272 3104 1901 132 21 0 chr6 34437984 34438273 -154841281 + AluJb SINE Alu 1 295 -17 292 242 172 0 chr6 34438292 34438420 -154841134 + MIR SINE MIR 113 262 0 267 149 0 0 chr6 34438571 34438626 -154840928 - AluJb SINE Alu 0 302 254 929 172 65 6 chr6 34438649 34438818 -154840736 - AluJb SINE Alu -133 179 1 2064 74 57 7 chr6 34438959 34439242 -154840312 - AluSg1 SINE Alu -12 297 1 1457 161 119 0 chr6 34439272 34439533 -154840021 + AluJo SINE Alu 1 292 -20 327 25 0 0 chr6 34440858 34440898 -154838656 + (TG)n Simple_repeat Simple_repeat 2 41 0 2232 112 0 0 chr6 34441657 34441962 -154837592 - AluSx SINE Alu -7 305 1 2248 100 0 10 chr6 34442524 34442833 -154836721 - AluSq SINE Alu -1 312 7 2049 117 10 7 chr6 34443099 34443399 -154836155 - AluSx SINE Alu -11 301 1 2065 134 0 0 chr6 34444903 34445202 -154834352 + AluSx SINE Alu 1 299 -13 215 337 74 0 chr6 34445204 34445299 -154834255 - L2 LINE L2 -13 3300 3199 1599 84 18 4 chr6 34446016 34446146 -154833408 + AluSq SINE Alu 1 137 -176 2534 71 0 0 chr6 34446146 34446457 -154833097 + AluY SINE Alu 1 311 0 1599 84 18 4 chr6 34446457 34446551 -154833003 + AluSq SINE Alu 137 228 -85 2206 115 7 0 chr6 34446932 34447236 -154832318 + AluSx SINE Alu 1 306 -6 2318 81 3 7 chr6 34449471 34449779 -154829775 - AluSc SINE Alu -2 307 1 1305 166 78 68 chr6 34449782 34450078 -154829476 - AluJo SINE Alu -13 299 1 258 302 35 12 chr6 34450498 34450584 -154828970 - MIR3 SINE MIR -18 190 103 2187 82 6 32 chr6 34454304 34454619 -154824935 - AluSg SINE Alu -3 307 1 568 268 89 21 chr6 34455098 34455333 -154824221 + MLT1H1 LTR MaLR 254 504 -51 722 184 35 21 chr6 34462170 34462311 -154817243 - FLAM_C SINE Alu 0 143 1 1992 108 7 3 chr6 34462899 34463185 -154816369 - AluSx SINE Alu -25 287 1 213 132 0 0 chr6 34463621 34463659 -154815895 + (CTG)n Simple_repeat Simple_repeat 2 39 0 751 148 0 56 chr6 34464344 34464370 -154815184 - AluJo SINE Alu -178 134 108 2053 128 3 0 chr6 34464370 34464658 -154814896 - AluSg SINE Alu -21 289 1 751 148 0 56 chr6 34464658 34464773 -154814781 - AluJo SINE Alu -204 108 1 612 200 18 0 chr6 34465609 34465719 -154813835 - FLAM_A SINE Alu -19 123 12 1597 176 20 20 chr6 34466647 34466949 -154812605 - AluJo SINE Alu -10 302 1 2264 61 7 14 chr6 34468122 34468416 -154811138 + AluSc SINE Alu 1 292 -17 2223 96 3 3 chr6 34469660 34469961 -154809593 + AluSp SINE Alu 9 309 -4 243 146 0 0 chr6 34472273 34472314 -154807240 + (CCG)n Simple_repeat Simple_repeat 2 42 0 1991 78 89 0 chr6 34473569 34473850 -154805704 + AluSg SINE Alu 1 306 -4 2376 76 10 0 chr6 34473854 34474158 -154805396 + AluSp SINE Alu 5 311 -2 2372 91 3 0 chr6 34474224 34474532 -154805022 + AluSc SINE Alu 1 309 0 823 141 23 0 chr6 34474545 34474673 -154804881 + FLAM_C SINE Alu 4 134 -9 346 326 7 21 chr6 34474943 34475084 -154804470 + L2 LINE L2 1687 1825 -1489 2347 90 3 3 chr6 34475085 34475396 -154804158 - AluSq SINE Alu -2 311 1 2141 94 6 31 chr6 34475455 34475775 -154803779 - AluSp SINE Alu -1 312 1 215 240 133 0 chr6 34475837 34475912 -154803642 - MIR SINE MIR -113 149 65 2215 91 0 3 chr6 34479074 34479370 -154800184 - AluSc SINE Alu -14 295 1 453 265 62 138 chr6 34479488 34479645 -154799909 - L2 LINE L2 0 3313 3145 2386 78 0 0 chr6 34479645 34479951 -154799603 + AluSg SINE Alu 1 306 -4 453 265 62 138 chr6 34479951 34480025 -154799529 - L2 LINE L2 -168 3145 3067 2215 113 3 0 chr6 34480025 34480336 -154799218 - AluSx SINE Alu 0 312 1 2103 98 0 0 chr6 34480336 34480612 -154798942 - AluSg SINE Alu -21 289 14 453 265 62 138 chr6 34480336 34480645 -154798909 - L2 LINE L2 -246 3067 3074 1084 170 0 0 chr6 34480645 34480810 -154798744 + FRAM SINE Alu 1 165 -1 453 265 62 138 chr6 34480810 34480868 -154798686 - L2 LINE L2 -238 3075 3014 2145 93 3 17 chr6 34480868 34481169 -154798385 - AluSg SINE Alu -13 297 1 2130 122 0 0 chr6 34481484 34481779 -154797775 - AluSc SINE Alu -14 295 1 210 71 0 0 chr6 34481906 34481934 -154797620 + (GGA)n Simple_repeat Simple_repeat 3 30 0 2313 93 0 0 chr6 34482471 34482782 -154796772 - AluY SINE Alu 0 311 1 1523 266 106 22 chr6 34482791 34483411 -154796143 - MER21B LTR ERV1 -60 803 98 277 194 42 28 chr6 34483466 34483528 -154796026 - MER21B LTR ERV1 -778 85 20 345 47 0 0 chr6 34483528 34483571 -154795983 + (CA)n Simple_repeat Simple_repeat 2 44 0 1799 149 3 3 chr6 34483589 34483871 -154795683 - AluJb SINE Alu -30 282 1 1785 172 23 0 chr6 34483871 34484174 -154795380 - AluJo SINE Alu -2 310 1 2303 87 0 0 chr6 34484188 34484487 -154795067 - AluY SINE Alu -12 299 1 2212 58 7 20 chr6 34484487 34484781 -154794773 - AluY SINE Alu -19 292 3 23 0 0 0 chr6 34484785 34484808 -154794746 + AT_rich Low_complexity Low_complexity 1 23 0 519 191 275 39 chr6 34484820 34484998 -154794556 - L2 LINE L2 -337 2977 2758 2069 90 11 0 chr6 34485135 34485413 -154794141 + AluSp SINE Alu 1 281 -32 329 194 0 42 chr6 34485535 34485607 -154793947 + LTR48B LTR ERV1 1 69 -575 744 179 122 0 chr6 34485623 34485779 -154793775 + LTR48 LTR ERV1 175 349 -438 968 181 6 0 chr6 34485779 34485939 -154793615 - FRAM SINE Alu -1 165 5 2163 102 0 7 chr6 34485944 34486248 -154793306 - AluSx SINE Alu -10 302 1 944 191 0 0 chr6 34486259 34486427 -154793127 - AluJo/FRAM SINE Alu -8 304 137 1358 99 241 0 chr6 34486429 34486661 -154792893 - AluSg1 SINE Alu -15 294 7 2062 116 0 10 chr6 34486664 34486965 -154792589 - AluSc SINE Alu -11 298 1 24 0 0 0 chr6 34486967 34486991 -154792563 + AT_rich Low_complexity Low_complexity 1 24 0 773 190 70 0 chr6 34487023 34487181 -154792373 - LTR26E LTR ERV1 -453 169 1 2107 106 7 0 chr6 34487241 34487533 -154792021 - AluSx SINE Alu -18 294 1 1963 118 0 0 chr6 34487716 34488020 -154791534 - AluY SINE Alu 0 307 4 2050 105 35 0 chr6 34488120 34488405 -154791149 - AluSg SINE Alu -15 295 1 287 377 0 11 chr6 34488555 34488708 -154790846 + GA-rich Low_complexity Low_complexity 2 154 -20 1717 126 0 0 chr6 34488708 34488947 -154790607 + AluSx SINE Alu 1 239 -73 287 377 0 11 chr6 34488947 34488968 -154790586 + GA-rich Low_complexity Low_complexity 154 174 0 229 204 41 0 chr6 34488972 34489021 -154790533 + L2 LINE L2 3263 3313 0 526 372 75 10 chr6 34489386 34489770 -154789784 - L2 LINE L2 -743 2571 2163 566 214 0 53 chr6 34489803 34489934 -154789620 + FLAM_A SINE Alu 13 136 -6 2258 99 3 0 chr6 34489965 34490267 -154789287 + AluSq SINE Alu 1 303 -10 1897 210 12 31 chr6 34490528 34490798 -154788756 + L1ME2 LINE L1 5687 5946 -218 1690 156 0 55 chr6 34490798 34490926 -154788628 + AluJo SINE Alu 1 135 -177 2061 110 0 42 chr6 34490926 34491235 -154788319 - AluSg SINE Alu -14 296 1 1690 156 0 55 chr6 34491235 34491414 -154788140 + AluJo SINE Alu 135 291 -21 1897 210 12 31 chr6 34491414 34491629 -154787925 + L1ME2 LINE L1 5946 6163 -1 2346 70 0 7 chr6 34491639 34491941 -154787613 + AluY SINE Alu 1 300 -11 2204 98 26 0 chr6 34492003 34492308 -154787246 + AluSq SINE Alu 1 313 0 2241 92 3 7 chr6 34492702 34493007 -154786547 + AluSx SINE Alu 1 304 -8 2264 100 0 0 chr6 34493122 34493421 -154786133 + AluSg SINE Alu 5 303 -7 2221 93 7 0 chr6 34493898 34494198 -154785356 - AluSq SINE Alu -11 302 1 1586 170 0 55 chr6 34494631 34494943 -154784611 + AluJo SINE Alu 1 295 -17 1874 136 7 0 chr6 34495148 34495455 -154784099 + AluSx SINE Alu 1 309 0 2206 75 0 3 chr6 34495477 34495787 -154783767 + AluSg SINE Alu 1 309 0 1082 176 22 22 chr6 34495794 34496016 -154783538 + AluJo SINE Alu 68 289 -23 1071 136 25 5 chr6 34496180 34496379 -154783175 + Tigger1 DNA MER2_type 24 226 -2192 1300 132 0 45 chr6 34496379 34496540 -154783014 - AluJo SINE Alu -18 294 127 1857 134 27 0 chr6 34496540 34496832 -154782722 - AluSp SINE Alu -11 302 3 1300 132 0 45 chr6 34496832 34496864 -154782690 - AluJo SINE Alu -185 127 110 1757 167 34 0 chr6 34496864 34497158 -154782396 + AluJb SINE Alu 1 304 -8 1300 132 0 45 chr6 34497158 34497183 -154782371 - AluJo SINE Alu -202 110 85 586 250 32 0 chr6 34497190 34497314 -154782240 - FAM SINE Alu -57 128 1 473 103 47 103 chr6 34497314 34497371 -154782183 + Tigger1 DNA MER2_type 1166 1217 -1201 2074 113 0 0 chr6 34497371 34497688 -154781866 + AluSx SINE Alu 1 317 0 473 103 47 103 chr6 34497688 34497736 -154781818 + Tigger1 DNA MER2_type 1217 1266 -1152 1538 207 0 37 chr6 34497740 34497976 -154781578 - AluJb SINE Alu 0 312 90 2311 95 0 0 chr6 34497976 34498281 -154781273 - AluY SINE Alu -6 305 1 1538 207 0 37 chr6 34498281 34498368 -154781186 - AluJb SINE Alu -222 90 1 1684 181 0 3 chr6 34498420 34498712 -154780842 - AluJo SINE Alu -21 291 1 1439 114 0 30 chr6 34498712 34498848 -154780706 + Tigger1 DNA MER2_type 1248 1376 -1042 2426 77 3 0 chr6 34498848 34499160 -154780394 - AluSp SINE Alu 0 313 1 1439 114 0 30 chr6 34499160 34499260 -154780294 + Tigger1 DNA MER2_type 1376 1477 -941 1663 149 46 7 chr6 34499261 34499543 -154780011 + AluJb SINE Alu 2 294 -18 2086 100 0 0 chr6 34499547 34499828 -154779726 + AluSx SINE Alu 27 307 -5 459 0 0 0 chr6 34499837 34499888 -154779666 + (CA)n Simple_repeat Simple_repeat 2 52 0 2026 121 3 7 chr6 34500785 34500951 -154778603 - AluSx SINE Alu -12 300 134 2271 101 0 0 chr6 34500951 34501247 -154778307 - AluSx SINE Alu -16 296 1 2026 121 3 7 chr6 34501247 34501378 -154778176 - AluSx SINE Alu -178 134 4 1953 138 7 0 chr6 34501392 34501681 -154777873 - AluSx SINE Alu -21 291 1 470 168 257 0 chr6 34501763 34501876 -154777678 + MER5A DNA MER1_type 48 189 0 475 83 0 0 chr6 34502050 34502110 -154777444 + AluS SINE Alu 34 93 -219 1641 135 40 0 chr6 34502111 34502363 -154777191 + AluSx SINE Alu 47 308 -4 2372 66 0 7 chr6 34502574 34502875 -154776679 - AluSg SINE Alu -11 299 1 37 0 0 0 chr6 34504307 34504344 -154775210 + AT_rich Low_complexity Low_complexity 1 37 0 453 36 0 0 chr6 34504764 34504819 -154774735 + (TC)n Simple_repeat Simple_repeat 2 56 0 667 219 8 0 chr6 34504819 34504942 -154774612 - FLAM_A SINE Alu -8 125 2 245 210 24 8 chr6 34504951 34505075 -154774479 + CT-rich Low_complexity Low_complexity 2 127 0 227 275 184 9 chr6 34505900 34506009 -154773545 + MIR SINE MIR 21 148 -60 199 342 144 5 chr6 34506048 34506235 -154773319 - MIR SINE MIR -30 232 20 1604 183 52 0 chr6 34507916 34508205 -154771349 - AluJo SINE Alu -8 304 1 2091 128 0 0 chr6 34508405 34508701 -154770853 - AluSx SINE Alu -16 296 1 2067 140 0 0 chr6 34508709 34509016 -154770538 - AluSq SINE Alu -6 307 1 499 146 62 0 chr6 34509050 34509146 -154770408 + MIR SINE MIR 29 130 -132 1853 167 0 0 chr6 34509175 34509468 -154770086 + AluJb SINE Alu 1 293 -19 2267 100 3 3 chr6 34509629 34509940 -154769614 - AluSx SINE Alu -1 311 1 339 271 186 0 chr6 34510432 34510561 -154768993 + MIR3 SINE MIR 32 184 -24 22 35 0 0 chr6 34512172 34512201 -154767353 + GC_rich Low_complexity Low_complexity 1 29 0 1835 161 0 16 chr6 34513600 34513905 -154765649 - AluJo SINE Alu -8 304 5 779 168 0 44 chr6 34514067 34514204 -154765350 - FLAM_C SINE Alu -1 132 2 229 228 63 51 chr6 34514586 34514665 -154764889 + LTR42 LTR ERVL 85 164 -331 217 0 61 0 chr6 34515161 34515194 -154764360 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 180 227 0 23 chr6 34516800 34516844 -154762710 - L2 LINE L2 -7 3265 3223 222 37 0 0 chr6 34517003 34517030 -154762524 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 183 191 0 48 chr6 34517031 34517073 -154762481 - L2 LINE L2 -13 3259 3220 264 321 0 22 chr6 34517073 34517210 -154762344 + CT-rich Low_complexity Low_complexity 2 135 0 24 0 0 0 chr6 34519106 34519130 -154760424 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr6 34520464 34520489 -154759065 + (GA)n Simple_repeat Simple_repeat 2 26 0 286 242 34 56 chr6 34520560 34520738 -154758816 + (CAGAGA)n Simple_repeat Simple_repeat 2 175 0 506 232 16 0 chr6 34521412 34521537 -154758017 - MER94 DNA DNA -7 127 1 2082 125 3 0 chr6 34521834 34522131 -154757423 + AluSx SINE Alu 1 298 -14 1511 218 85 22 chr6 34522150 34522599 -154756955 - L1ME3 LINE L1 -2 6160 5684 2689 114 12 7 chr6 34522974 34523373 -154756181 - MER39 LTR ERV1 0 707 306 2132 101 7 13 chr6 34523373 34523680 -154755874 - AluSx SINE Alu -7 305 1 1923 139 0 10 chr6 34523882 34524213 -154755341 + AluY SINE Alu 1 311 0 325 263 21 0 chr6 34524666 34524761 -154754793 + (CCCCAA)n Simple_repeat Simple_repeat 3 99 0 1021 251 107 101 chr6 34524943 34525490 -154754064 - L2 LINE L2 0 3313 2771 287 49 24 0 chr6 34525490 34525531 -154754023 + (TG)n Simple_repeat Simple_repeat 2 43 0 1021 251 107 101 chr6 34525531 34525601 -154753953 - L2 LINE L2 -542 2771 2703 1535 165 16 76 chr6 34525601 34525868 -154753686 - AluJo SINE Alu -6 296 49 1965 122 14 0 chr6 34525868 34526164 -154753390 - AluSq SINE Alu -13 300 1 1535 165 16 76 chr6 34526164 34526211 -154753343 - AluJo SINE Alu -253 49 1 2158 113 10 0 chr6 34526216 34526517 -154753037 - AluSx SINE Alu -8 304 1 1979 138 17 0 chr6 34526517 34526814 -154752740 - AluSx SINE Alu -10 302 1 832 208 13 0 chr6 34526817 34526971 -154752583 - AluJo SINE Alu -6 296 141 2142 113 3 0 chr6 34526981 34527274 -154752280 - AluSg SINE Alu -16 294 1 1021 251 107 101 chr6 34527274 34527564 -154751990 - L2 LINE L2 -622 2691 2310 195 347 126 0 chr6 34527877 34527972 -154751582 - MIR3 SINE MIR -13 195 89 860 144 0 8 chr6 34528059 34528191 -154751363 - AluJo SINE Alu -171 131 1 1763 175 0 14 chr6 34528226 34528523 -154751031 - AluJo SINE Alu -19 293 1 2137 114 0 0 chr6 34529062 34529351 -154750203 + AluSq SINE Alu 1 289 -24 30 0 0 0 chr6 34529351 34529381 -154750173 + AT_rich Low_complexity Low_complexity 1 30 0 211 167 24 0 chr6 34529556 34529598 -154749956 - MIR SINE MIR -128 134 92 268 213 7 3 chr6 34529644 34529704 -154749850 - MER57A LTR ERV1 -55 348 301 2276 88 0 0 chr6 34530027 34530324 -154749230 - AluSx SINE Alu -11 301 5 22 0 0 0 chr6 34531282 34531304 -154748250 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 34531615 34531642 -154747912 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 34531695 34531717 -154747837 + GC_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr6 34533279 34533323 -154746231 + GC_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr6 34535954 34535985 -154743569 + GC_rich Low_complexity Low_complexity 1 31 0 219 146 0 0 chr6 34535992 34536033 -154743521 + (CGG)n Simple_repeat Simple_repeat 3 43 0 21 0 0 0 chr6 34536072 34536093 -154743461 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 34536127 34536150 -154743404 + GC_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr6 34536411 34536445 -154743109 + GC_rich Low_complexity Low_complexity 1 34 0 220 328 109 16 chr6 34537495 34537687 -154741867 - L2 LINE L2 0 3313 3104 582 145 35 35 chr6 34537880 34538025 -154741529 - LTR23 LTR ERV1 0 437 293 794 185 15 0 chr6 34538032 34538162 -154741392 - FLAM_C SINE Alu -1 132 1 251 156 0 0 chr6 34538227 34538272 -154741282 + MER66A LTR ERV1 290 334 -144 22 35 0 0 chr6 34538281 34538310 -154741244 + AT_rich Low_complexity Low_complexity 1 29 0 1201 169 88 15 chr6 34538321 34538594 -154740960 - LTR23 LTR ERV1 -144 293 1 363 100 0 146 chr6 34538655 34538729 -154740825 - MER44D DNA MER2_type -2002 485 375 1412 116 160 0 chr6 34538729 34538846 -154740708 + AluSx SINE Alu 1 98 -214 180 0 0 0 chr6 34538846 34538866 -154740688 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1412 116 160 0 chr6 34538866 34538998 -154740556 + AluSx SINE Alu 98 290 -22 363 100 0 146 chr6 34538998 34539033 -154740521 - MER44D DNA MER2_type -2112 375 337 1417 125 76 40 chr6 34539062 34539094 -154740460 - L1MB3 LINE L1 -28 6155 6126 2128 104 3 23 chr6 34539094 34539229 -154740325 + AluSx SINE Alu 1 137 -175 2111 105 10 10 chr6 34539229 34539534 -154740020 + AluSq SINE Alu 1 305 -8 2128 104 3 23 chr6 34539534 34539707 -154739847 + AluSx SINE Alu 137 303 -9 1417 125 76 40 chr6 34539707 34540002 -154739552 - L1MB3 LINE L1 -57 6126 5816 639 215 7 23 chr6 34540047 34540060 -154739494 - L1MB3 LINE L1 -325 5829 5817 1420 171 49 31 chr6 34540060 34540346 -154739208 + AluJo SINE Alu 1 291 -21 639 215 7 23 chr6 34540346 34540526 -154739028 - L1MB3 LINE L1 -337 5817 5654 2085 104 0 17 chr6 34541419 34541716 -154737838 - AluSx SINE Alu -20 292 1 1011 231 78 106 chr6 34542039 34542431 -154737123 - L1MC5 LINE L1 -37 7924 7522 2290 81 3 10 chr6 34542431 34542729 -154736825 + AluSp SINE Alu 1 296 -17 1011 231 78 106 chr6 34542729 34542772 -154736782 - L1MC5 LINE L1 -439 7522 7479 2178 107 0 10 chr6 34542772 34543092 -154736462 - AluSg SINE Alu 0 310 1 1011 231 78 106 chr6 34543092 34543127 -154736427 - L1MC5 LINE L1 -482 7479 7445 1971 118 31 0 chr6 34543127 34543415 -154736139 + AluSq SINE Alu 3 299 -14 1011 231 78 106 chr6 34543415 34543573 -154735981 - L1MC5 LINE L1 -516 7445 7312 335 306 20 48 chr6 34543576 34543723 -154735831 - L1MD3 LINE L1 -437 7558 7416 239 280 93 47 chr6 34543760 34543910 -154735644 - L1ME3A LINE L1 -220 5950 5794 444 161 0 0 chr6 34544106 34544187 -154735367 + GA-rich Low_complexity Low_complexity 2 82 0 392 338 69 0 chr6 34546108 34546253 -154733301 - L2 LINE L2 0 3272 3118 258 286 18 45 chr6 34546318 34546430 -154733124 - MIR SINE MIR -144 118 10 204 333 35 11 chr6 34546427 34546514 -154733040 - L2 LINE L2 -163 3109 3021 * 581 258 88 88 chr6 34547259 34547573 -154731981 - L1MC5 LINE L1 -915 7046 6730 1884 83 0 0 chr6 34547573 34547814 -154731740 - AluSg SINE Alu -14 296 56 581 258 88 88 chr6 34547814 34547930 -154731624 - L1MC5 LINE L1 -1230 6731 6616 1013 198 12 0 chr6 34547931 34548103 -154731451 - FAM SINE Alu -1 174 1 2328 60 10 3 chr6 34548181 34548480 -154731074 - AluY SINE Alu -10 301 1 546 221 0 18 chr6 34548481 34548594 -154730960 - MIR SINE MIR -111 151 41 874 208 33 6 chr6 34549431 34549614 -154729940 + MER53 DNA DNA 1 188 -1 380 315 204 0 chr6 34549908 34550070 -154729484 + MER91A DNA MER1_type 2 196 0 257 220 0 17 chr6 34551212 34551271 -154728283 + C-rich Low_complexity Low_complexity 4 61 0 458 263 66 15 chr6 34551280 34551417 -154728137 + MIR SINE MIR 21 164 -98 225 342 33 72 chr6 34551420 34551540 -154728014 + L2 LINE L2 1578 1701 -1613 2427 86 0 3 chr6 34551540 34551854 -154727700 - AluSq SINE Alu 0 313 1 225 342 33 72 chr6 34551854 34552066 -154727488 + L2 LINE L2 1701 1897 -1417 731 243 35 0 chr6 34553107 34553276 -154726278 - MER5A DNA MER1_type 0 189 15 1999 117 10 3 chr6 34554081 34554372 -154725182 + AluSq SINE Alu 4 296 -17 264 263 179 0 chr6 34556824 34556919 -154722635 + L1ME3A LINE L1 6027 6138 -32 1314 159 45 0 chr6 34556989 34557209 -154722345 - AluJo SINE Alu -82 230 1 1262 120 0 5 chr6 34557234 34557418 -154722136 + AluSg/x SINE Alu 127 309 -1 370 328 16 68 chr6 34558041 34558291 -154721263 + MIR SINE MIR 2 238 -24 336 256 150 44 chr6 34558233 34558413 -154721141 - MIR SINE MIR 0 262 64 * 401 263 132 0 chr6 34559236 34559350 -154720204 - MIR3 SINE MIR -37 171 43 206 229 238 9 chr6 34559376 34559481 -154720073 - L2 LINE L2 -3 3310 3182 1963 75 3 129 chr6 34559550 34559883 -154719671 - AluSg SINE Alu -9 291 1 260 305 11 0 chr6 34559902 34559997 -154719557 + L1ME4a LINE L1 5955 6050 -71 876 168 0 0 chr6 34560027 34560158 -154719396 - FLAM_C SINE Alu 0 133 3 2098 102 0 40 chr6 34560193 34560496 -154719058 + AluSx SINE Alu 1 291 -21 2184 87 10 0 chr6 34560501 34560790 -154718764 + AluSg SINE Alu 1 292 -18 288 365 10 0 chr6 34560877 34560981 -154718573 + MIR SINE MIR 49 153 -109 974 155 0 13 chr6 34560983 34561138 -154718416 + FRAM SINE Alu 5 157 -19 1830 173 0 0 chr6 34561140 34561460 -154718094 + AluJo SINE Alu 1 320 0 449 185 0 0 chr6 34563209 34563290 -154716264 + MIR SINE MIR 113 193 -69 285 294 92 17 chr6 34563518 34563637 -154715917 - L2 LINE L2 0 3313 3186 2487 38 0 0 chr6 34563678 34563970 -154715584 - AluY SINE Alu -19 292 1 322 286 36 18 chr6 34564203 34564315 -154715239 - MER91A DNA MER1_type -19 177 64 306 328 104 0 chr6 34564526 34564709 -154714845 - MIR3 SINE MIR 0 208 7 1446 173 7 75 chr6 34564840 34565168 -154714386 - AluJo SINE Alu 0 316 9 568 252 7 14 chr6 34565171 34565314 -154714240 + MIR SINE MIR 121 262 0 2198 86 21 0 chr6 34565556 34565846 -154713708 + AluSx SINE Alu 4 299 -13 200 171 0 0 chr6 34565855 34565890 -154713664 - L2 LINE L2 -17 3255 3221 1592 188 34 7 chr6 34565919 34566217 -154713337 - AluJb SINE Alu 0 312 7 1784 138 0 49 chr6 34566278 34566582 -154712972 + AluSg SINE Alu 1 289 -21 796 251 40 52 chr6 34566629 34566762 -154712792 - L1MC5 LINE L1 -30 7931 7798 2258 95 0 3 chr6 34566762 34567057 -154712497 - AluSq SINE Alu -16 297 4 796 251 40 52 chr6 34567057 34567250 -154712304 - L1MC5 LINE L1 -163 7798 7609 362 219 219 0 chr6 34568428 34568533 -154711021 + MER45A DNA AcHobo 47 174 -4 2223 83 10 13 chr6 34569296 34569608 -154709946 + AluSx SINE Alu 1 311 -1 372 298 139 29 chr6 34569689 34569887 -154709667 - MIR SINE MIR -34 228 15 2219 73 27 3 chr6 34570147 34570448 -154709106 + AluSx SINE Alu 1 308 -4 209 276 0 26 chr6 34571156 34571232 -154708322 + CT-rich Low_complexity Low_complexity 2 75 0 696 263 13 36 chr6 34571861 34572085 -154707469 - L2 LINE L2 -3 3310 3092 637 279 76 0 chr6 34572692 34572864 -154706690 - MER91A DNA MER1_type 0 196 12 1802 160 3 22 chr6 34574627 34574939 -154704615 - AluJb SINE Alu -6 306 1 21 0 0 0 chr6 34575011 34575032 -154704522 + AT_rich Low_complexity Low_complexity 1 21 0 2304 101 0 0 chr6 34575032 34575339 -154704215 - AluSx SINE Alu 0 312 6 803 193 0 7 chr6 34575343 34575483 -154704071 - AluJo SINE Alu -173 139 1 2038 124 3 0 chr6 34575509 34575800 -154703754 + AluSg SINE Alu 1 292 -18 1253 218 66 3 chr6 34576140 34576429 -154703125 + AluJo SINE Alu 1 307 -5 369 213 88 17 chr6 34576463 34576567 -154702987 + MER5A DNA MER1_type 69 186 -3 2235 105 0 0 chr6 34576693 34576988 -154702566 + AluSg SINE Alu 1 295 -15 241 209 0 0 chr6 34577068 34577111 -154702443 + MER66A LTR ERV1 290 332 -146 2228 90 0 7 chr6 34577113 34577413 -154702141 - AluSx SINE Alu -14 298 1 34 24 0 0 chr6 34577417 34577458 -154702096 + AT_rich Low_complexity Low_complexity 1 41 0 2064 128 0 3 chr6 34577468 34577764 -154701790 + AluSx SINE Alu 1 295 -17 1909 149 7 0 chr6 34577817 34578113 -154701441 + AluSx SINE Alu 1 298 -14 561 233 15 53 chr6 34578128 34578261 -154701293 - FLAM_A SINE Alu -5 128 1 5272 72 35 55 chr6 34578293 34579152 -154700402 + SVA Other Other 25 866 -520 1203 71 3 45 chr6 34579181 34579530 -154700024 + SVA Other Other 635 866 -592 6756 58 5 43 chr6 34579543 34580535 -154699019 + SVA Other Other 433 1386 0 615 209 26 40 chr6 34580542 34580735 -154698819 - LTR24B LTR ERV1 -40 595 374 4412 127 51 32 chr6 34580736 34581935 -154697619 - pTR5 LTR ERV1 -171 2267 743 1704 108 140 35 chr6 34581936 34582278 -154697276 - LTR24B LTR ERV1 -195 381 4 1812 128 3 35 chr6 34582609 34582899 -154696655 - AluJb SINE Alu -14 298 18 233 29 29 0 chr6 34582978 34583012 -154696542 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1531 99 0 22 chr6 34583066 34583288 -154696266 - AluSg/x SINE Alu -15 295 79 1396 98 0 0 chr6 34583288 34583471 -154696083 + AluSc SINE Alu 115 297 -12 1052 76 0 0 chr6 34583471 34583603 -154695951 + AluSp SINE Alu 1 132 -181 2181 79 16 7 chr6 34583606 34583909 -154695645 + AluSq SINE Alu 1 306 -7 1557 188 3 26 chr6 34583912 34584221 -154695333 + AluJb SINE Alu 1 302 -10 2203 93 3 10 chr6 34584265 34584578 -154694976 + AluY SINE Alu 1 311 0 2205 97 0 7 chr6 34584688 34584988 -154694566 - AluSx SINE Alu -10 302 5 1731 159 4 0 chr6 34584998 34585275 -154694279 - AluJo SINE Alu -22 290 13 283 348 22 0 chr6 34585283 34585464 -154694090 + L1MC4 LINE L1 7732 7916 -126 1405 181 51 14 chr6 34585488 34585780 -154693774 - AluJo SINE Alu -9 303 1 180 0 0 0 chr6 34586193 34586213 -154693341 + (A)n Simple_repeat Simple_repeat 1 20 0 437 176 0 24 chr6 34586220 34586305 -154693249 + AluJb SINE Alu 198 280 -32 2099 108 3 3 chr6 34586500 34586795 -154692759 + AluSg SINE Alu 1 295 -15 300 267 137 7 chr6 34586807 34586953 -154692601 - L1MEd LINE L1 -5004 1115 951 937 126 0 15 chr6 34586966 34587101 -154692453 - FLAM_C SINE Alu 0 133 1 1985 146 0 0 chr6 34587262 34587557 -154691997 - AluSx SINE Alu -17 295 1 448 102 0 0 chr6 34587768 34587827 -154691727 - AluSq/x SINE Alu -192 120 62 1459 256 35 14 chr6 34587827 34588253 -154691301 - L2 LINE L2 -466 2848 2414 2486 49 10 0 chr6 34588505 34588811 -154690743 + AluY SINE Alu 1 309 -2 618 241 0 0 chr6 34589010 34589126 -154690428 + FLAM_A SINE Alu 1 116 -17 1552 170 17 17 chr6 34589129 34589417 -154690137 - AluJb SINE Alu -18 294 7 1439 181 13 43 chr6 34589446 34589590 -154689964 + AluJb SINE Alu 1 148 -164 2332 64 7 3 chr6 34589590 34589886 -154689668 + AluY SINE Alu 1 297 -14 2260 101 0 0 chr6 34589886 34590182 -154689372 + AluY SINE Alu 1 296 -15 1439 181 13 43 chr6 34590182 34590339 -154689215 + AluJb SINE Alu 146 294 -18 805 113 52 0 chr6 34590344 34590459 -154689095 + AluSq/x SINE Alu 1 121 -192 1681 113 48 61 chr6 34590591 34590746 -154688808 - AluSx SINE Alu -23 289 133 189 0 0 0 chr6 34590746 34590767 -154688787 + (TATG)n Simple_repeat Simple_repeat 2 22 0 2079 107 0 14 chr6 34590767 34591057 -154688497 - AluSq SINE Alu -27 286 1 2201 48 4 0 chr6 34591061 34591330 -154688224 - AluY SINE Alu -28 283 14 1681 113 48 61 chr6 34591330 34591461 -154688093 - AluSx SINE Alu -181 131 1 1735 118 45 21 chr6 34591549 34591838 -154687716 + AluSp SINE Alu 1 296 -17 1985 79 48 7 chr6 34591838 34592129 -154687425 + AluY SINE Alu 1 303 -8 1891 109 11 4 chr6 34592130 34592404 -154687150 + AluSc SINE Alu 2 277 -32 1702 141 10 21 chr6 34592484 34592774 -154686780 + AluY SINE Alu 7 293 -18 1053 194 75 4 chr6 34592980 34593207 -154686347 + AluSx SINE Alu 53 295 -17 1848 109 0 66 chr6 34593261 34593564 -154685990 + AluSq SINE Alu 1 283 -30 1857 119 20 24 chr6 34593706 34594001 -154685553 - AluSc SINE Alu -15 294 1 1839 154 83 0 chr6 34594303 34594628 -154684926 + L1PA16 LINE L1 5804 6155 -11 1258 155 9 122 chr6 34594628 34594774 -154684780 + AluJb SINE Alu 1 89 -223 1957 103 7 47 chr6 34594774 34595075 -154684479 - AluSx SINE Alu -19 293 5 1258 155 9 122 chr6 34595075 34595264 -154684290 + AluJb SINE Alu 89 298 -14 1553 134 161 8 chr6 34595266 34595527 -154684027 + AluSx SINE Alu 2 302 0 1801 133 31 0 chr6 34595538 34595824 -154683730 + AluSg SINE Alu 1 295 -15 231 127 73 18 chr6 34595843 34595897 -154683657 + AluSq/x SINE Alu 56 112 -191 1287 142 93 19 chr6 34595897 34596208 -154683346 + MSTA LTR MaLR 1 364 -64 768 121 14 71 chr6 34597003 34597144 -154682410 + AluSq/x SINE Alu 2 134 -178 1170 201 148 11 chr6 34597272 34597535 -154682019 + AluJb SINE Alu 3 301 -1 1457 104 46 8 chr6 34597604 34597844 -154681710 + AluSc SINE Alu 56 304 -5 618 202 34 0 chr6 34597846 34597965 -154681589 + AluJo/FRAM SINE Alu 180 302 -10 2051 88 24 3 chr6 34597965 34598259 -154681295 + AluY SINE Alu 1 300 -11 23 0 0 0 chr6 34599227 34599250 -154680304 + GC_rich Low_complexity Low_complexity 1 23 0 638 161 36 51 chr6 34599405 34599542 -154680012 + AluJb SINE Alu 2 136 -176 2324 45 21 0 chr6 34599542 34599830 -154679724 + AluY SINE Alu 1 294 -17 2033 125 0 3 chr6 34599935 34600232 -154679322 - AluSx SINE Alu -16 296 1 2065 117 3 16 chr6 34600245 34600561 -154678993 - AluSx SINE Alu 0 312 1 415 284 93 12 chr6 34600566 34600728 -154678826 - MER5B DNA MER1_type 0 178 4 891 173 68 0 chr6 34600773 34600935 -154678619 + AluJb SINE Alu 117 289 -23 2524 55 3 0 chr6 34601020 34601331 -154678223 - AluSp SINE Alu -1 312 1 2308 91 0 7 chr6 34601380 34601689 -154677865 + AluSq SINE Alu 1 307 -6 1777 131 52 17 chr6 34601854 34602144 -154677410 - AluSx SINE Alu -12 300 1 815 174 0 0 chr6 34602145 34602283 -154677271 - AluSq/x SINE Alu -175 138 1 882 133 172 119 chr6 34602303 34602527 -154677027 - L1MA7 LINE L1 -2 6289 6038 1685 165 39 0 chr6 34602527 34602812 -154676742 + AluJo SINE Alu 1 296 -16 882 133 172 119 chr6 34602812 34602941 -154676613 - L1MA7 LINE L1 -253 6038 5917 1787 74 0 29 chr6 34602949 34603193 -154676361 + AluY SINE Alu 64 300 -11 24 53 0 0 chr6 34603564 34603602 -154675952 + AT_rich Low_complexity Low_complexity 1 38 0 246 32 0 0 chr6 34603638 34603669 -154675885 + (A)n Simple_repeat Simple_repeat 1 31 0 1910 66 8 0 chr6 34607275 34607517 -154672037 - AluSg SINE Alu -13 297 54 781 62 0 0 chr6 34607517 34607614 -154671940 - AluSg SINE Alu -212 98 2 1447 124 5 0 chr6 34607617 34607834 -154671720 - AluSg/x SINE Alu -9 303 86 210 71 0 0 chr6 34608035 34608063 -154671491 + (A)n Simple_repeat Simple_repeat 1 28 0 2050 79 3 59 chr6 34608596 34608900 -154670654 + AluSp SINE Alu 7 293 -20 2325 97 3 0 chr6 34609230 34609541 -154670013 - AluSx SINE Alu 0 312 1 2184 114 3 0 chr6 34609922 34610229 -154669325 + AluSx SINE Alu 1 308 -4 1664 154 32 4 chr6 34610538 34610817 -154668737 + AluJo SINE Alu 7 293 -19 212 283 0 0 chr6 34611675 34611728 -154667826 + G-rich Low_complexity Low_complexity 1 53 0 1058 83 89 0 chr6 34612194 34612351 -154667203 - AluJb SINE Alu -6 306 136 2373 75 0 0 chr6 34613138 34613443 -154666111 - AluSg SINE Alu -5 305 1 692 113 0 0 chr6 34614017 34614114 -154665440 - AluJb SINE Alu -5 307 211 274 157 78 0 chr6 34614114 34614165 -154665389 - L1MB5 LINE L1 -78 6096 6042 2112 110 7 3 chr6 34614175 34614475 -154665079 - AluSq SINE Alu -12 301 1 2005 94 3 49 chr6 34614482 34614790 -154664764 - AluSx SINE Alu -18 294 1 1936 131 24 0 chr6 34615393 34615691 -154663863 - AluSx SINE Alu -7 305 1 1359 77 0 0 chr6 34619278 34619459 -154660095 - AluY SINE Alu 0 311 131 1535 65 0 56 chr6 34619459 34619690 -154659864 - AluY SINE Alu -93 218 1 1781 173 90 27 chr6 34620103 34620209 -154659345 + L1MB2 LINE L1 5660 5758 -413 1991 129 0 13 chr6 34620209 34620511 -154659043 + AluSx SINE Alu 1 298 -14 1781 173 90 27 chr6 34620511 34620694 -154658860 + L1MB2 LINE L1 5758 5928 -243 1489 191 10 13 chr6 34620694 34620997 -154658557 + AluJb SINE Alu 1 302 -10 1781 173 90 27 chr6 34620997 34621186 -154658368 + L1MB2 LINE L1 5928 6169 -2 1549 167 7 20 chr6 34621195 34621344 -154658210 + AluJo SINE Alu 1 146 -166 1980 76 52 31 chr6 34621344 34621634 -154657920 + AluSx SINE Alu 1 296 -16 1549 167 7 20 chr6 34621634 34621784 -154657770 + AluJo SINE Alu 146 296 -16 387 0 0 0 chr6 34624221 34624264 -154655290 + (TG)n Simple_repeat Simple_repeat 2 44 0 2292 56 0 7 chr6 34624264 34624550 -154655004 - AluY SINE Alu -27 284 1 2228 102 10 0 chr6 34624799 34625104 -154654450 - AluSq SINE Alu -5 308 1 2142 99 0 0 chr6 34625208 34625492 -154654062 + AluSc SINE Alu 1 284 -25 788 176 47 7 chr6 34625807 34625955 -154653599 - FRAM SINE Alu -3 173 20 1634 125 156 0 chr6 34625962 34626218 -154653336 - AluSq SINE Alu -7 296 1 2088 113 3 0 chr6 34626219 34626521 -154653033 - AluSx SINE Alu -9 303 1 29 0 0 0 chr6 34626559 34626588 -154652966 + AT_rich Low_complexity Low_complexity 1 29 0 889 197 0 0 chr6 34627871 34628023 -154651531 + FRAM SINE Alu 4 155 -11 2134 102 7 0 chr6 34628161 34628454 -154651100 + AluSg SINE Alu 1 295 -15 1712 167 31 14 chr6 34628464 34628751 -154650803 + AluJb SINE Alu 1 292 -20 2455 80 0 0 chr6 34628758 34629069 -154650485 + AluY SINE Alu 1 311 0 817 84 0 0 chr6 34629081 34629188 -154650366 + AluSc SINE Alu 1 107 -202 340 317 112 0 chr6 34629265 34629426 -154650128 - MIR SINE MIR -30 232 54 2125 134 0 0 chr6 34629437 34629743 -154649811 - AluSg1 SINE Alu -3 306 1 648 213 0 44 chr6 34629766 34629902 -154649652 - FLAM_C SINE Alu -13 130 1 2092 125 3 0 chr6 34629944 34630240 -154649314 + AluSx SINE Alu 1 297 -15 439 130 0 14 chr6 34630328 34630397 -154649157 - AluJo SINE Alu -19 293 226 1037 183 33 0 chr6 34630397 34630577 -154648977 - AluJo SINE Alu -126 186 1 2068 99 0 7 chr6 34630883 34631193 -154648361 - AluSg SINE Alu 0 308 1 1972 99 46 30 chr6 34631206 34631509 -154648045 - AluSc SINE Alu -1 308 1 2148 129 0 0 chr6 34631514 34631824 -154647730 - AluSg SINE Alu 0 310 1 806 160 0 8 chr6 34631833 34631958 -154647596 - AluJo SINE Alu -176 136 13 2134 125 0 3 chr6 34632007 34632311 -154647243 - AluSx SINE Alu -9 303 1 1101 162 16 0 chr6 34632629 34632814 -154646740 - AluSg/x SINE Alu -5 305 118 25 0 0 0 chr6 34632814 34632839 -154646715 + AT_rich Low_complexity Low_complexity 1 25 0 1433 126 5 14 chr6 34632839 34632918 -154646636 - AluSx SINE Alu -99 213 135 2414 70 3 0 chr6 34632918 34633219 -154646335 - AluY SINE Alu -9 302 1 1433 126 5 14 chr6 34633219 34633354 -154646200 - AluSx SINE Alu -177 135 1 2238 95 0 3 chr6 34633464 34633770 -154645784 - AluSg SINE Alu -5 305 1 612 191 22 52 chr6 34633777 34633913 -154645641 - FLAM_C SINE Alu -1 132 1 482 179 0 94 chr6 34634102 34634169 -154645385 + AluJo SINE Alu 77 130 -182 2292 79 0 0 chr6 34634169 34634459 -154645095 + AluY SINE Alu 1 290 -21 482 179 0 94 chr6 34634459 34634508 -154645046 + AluJo SINE Alu 130 182 -130 * 522 148 0 0 chr6 34634505 34634586 -154644968 + AluJ/FRAM SINE Alu 218 298 -14 2112 125 10 0 chr6 34634789 34635094 -154644460 + AluSx SINE Alu 1 308 -4 2092 91 37 7 chr6 34635453 34635751 -154643803 + AluSq SINE Alu 1 307 -6 186 147 0 29 chr6 34636893 34636927 -154642627 - MIR3 SINE MIR -31 177 145 1026 95 19 6 chr6 34636928 34637086 -154642468 - AluSg/x SINE Alu -19 293 134 2085 110 7 19 chr6 34637086 34637281 -154642273 - AluSx SINE Alu -7 305 114 1856 92 4 0 chr6 34637281 34637531 -154642023 - AluSg1 SINE Alu -43 266 16 2085 110 7 19 chr6 34637531 34637644 -154641910 - AluSx SINE Alu -198 114 1 26 30 0 0 chr6 34637975 34638008 -154641546 + GC_rich Low_complexity Low_complexity 1 33 0 364 308 62 41 chr6 34639103 34639298 -154640256 + MIR SINE MIR 54 252 -10 311 358 47 5 chr6 34639685 34639699 -154639855 + L2 LINE L2 3080 3092 -221 1937 109 59 30 chr6 34639699 34640002 -154639552 - AluSx SINE Alu 0 312 1 311 358 47 5 chr6 34640002 34640177 -154639377 + L2 LINE L2 3092 3277 -36 1988 52 0 12 chr6 34640299 34640548 -154639006 - AluY SINE Alu -12 299 54 221 0 0 33 chr6 34642442 34642472 -154637082 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 713 185 8 8 chr6 34642472 34642591 -154636963 - AluJb SINE Alu -188 124 3 1035 161 0 0 chr6 34642660 34642821 -154636733 - AluSg/x SINE Alu -18 292 132 729 319 24 67 chr6 34643005 34643191 -154636363 - L1MC4a LINE L1 -1868 5940 5748 2493 77 0 0 chr6 34643191 34643504 -154636050 - AluSq SINE Alu 0 313 1 729 319 24 67 chr6 34643504 34643596 -154635958 - L1MC4a LINE L1 -2060 5748 5654 1524 65 52 60 chr6 34643596 34643749 -154635805 - MER30 DNA MER1_type 0 230 78 2165 59 3 46 chr6 34643749 34644085 -154635469 - AluY SINE Alu 0 311 1 1524 65 52 60 chr6 34644085 34644163 -154635391 - MER30 DNA MER1_type -152 78 1 729 319 24 67 chr6 34644163 34644600 -154634954 - L1MC4a LINE L1 -2154 5654 5255 269 257 29 0 chr6 34644854 34644924 -154634630 - L2 LINE L2 0 3313 3242 2199 88 0 10 chr6 34644977 34645299 -154634255 - AluY SINE Alu 0 311 1 2093 119 16 0 chr6 34645301 34645604 -154633950 - AluSg SINE Alu -2 308 1 2265 82 0 25 chr6 34645670 34645987 -154633567 - AluY SINE Alu -2 309 1 843 113 17 0 chr6 34646014 34646129 -154633425 - FLAM_C SINE Alu -26 117 1 2066 121 7 7 chr6 34646163 34646461 -154633093 - AluSx SINE Alu -14 298 1 1238 194 57 21 chr6 34646571 34646880 -154632674 - AluJo SINE Alu 0 312 1 2141 128 3 0 chr6 34647128 34647433 -154632121 - AluSx SINE Alu 0 312 7 2101 142 3 0 chr6 34647534 34647845 -154631709 - AluSx SINE Alu 0 312 1 989 83 0 8 chr6 34647847 34647980 -154631574 - AluSq/x SINE Alu -180 132 1 2187 108 0 3 chr6 34649863 34650160 -154629394 + AluSg SINE Alu 1 296 -14 640 220 0 0 chr6 34650166 34650284 -154629270 - FLAM_C SINE Alu -25 118 1 1971 142 0 16 chr6 34650293 34650602 -154628952 - AluSx SINE Alu -8 304 1 451 273 79 7 chr6 34652451 34652590 -154626964 + MER91A DNA MER1_type 47 195 -1 629 37 0 0 chr6 34654919 34655000 -154624554 + HY3 scRNA scRNA 1 81 -20 1864 141 16 10 chr6 34655018 34655323 -154624231 + AluJb SINE Alu 1 307 -5 204 343 97 15 chr6 34655418 34655552 -154624002 - MIR3 SINE MIR -61 147 3 393 314 43 5 chr6 34658043 34658228 -154621326 - L2 LINE L2 -411 2903 2712 211 182 212 0 chr6 34658643 34658709 -154620845 - MIR SINE MIR -99 109 30 562 169 203 0 chr6 34658868 34658986 -154620568 - FLAM_C SINE Alu -1 142 1 2359 93 3 0 chr6 34659642 34659954 -154619600 - AluSq SINE Alu 0 313 1 2079 111 0 0 chr6 34659957 34660257 -154619297 - AluSx SINE Alu 0 305 6 2433 67 3 13 chr6 34660928 34661271 -154618283 + AluSp SINE Alu 1 340 0 1810 138 0 35 chr6 34661379 34661691 -154617863 + AluJb SINE Alu 3 303 -9 2610 39 3 0 chr6 34661807 34662117 -154617437 - AluY SINE Alu 0 311 1 308 290 0 30 chr6 34662235 34662335 -154617219 + MIR SINE MIR 51 147 -115 744 101 70 8 chr6 34662362 34662491 -154617063 - LTR7 LTR ERV1 -313 137 1 355 242 102 8 chr6 34662652 34662780 -154616774 - MIR SINE MIR -4 258 119 1840 128 30 37 chr6 34662786 34663084 -154616470 - AluJo SINE Alu 0 312 17 267 79 0 0 chr6 34663190 34663228 -154616326 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 1730 100 30 118 chr6 34663239 34663568 -154615986 - AluSq SINE Alu -13 300 1 1915 130 10 17 chr6 34664970 34665271 -154614283 - AluSq SINE Alu -14 299 1 792 165 24 0 chr6 34665373 34665500 -154614054 - FLAM_C SINE Alu -13 130 1 2140 113 0 28 chr6 34665658 34665977 -154613577 - AluSg SINE Alu 0 310 1 317 266 106 11 chr6 34666701 34666795 -154612759 + L1MC4 LINE L1 6599 6701 -1341 477 136 239 7 chr6 34666802 34666957 -154612597 - L1ME3 LINE L1 -2 6160 5970 2363 83 6 3 chr6 34668360 34668672 -154610882 - AluSq SINE Alu 0 313 1 862 132 28 7 chr6 34668731 34668896 -154610658 + AluJb SINE Alu 137 304 0 197 374 130 0 chr6 34672729 34672844 -154606710 + L2 LINE L2 3139 3268 -4 267 370 0 43 chr6 34675803 34675858 -154603696 - L2 LINE L2 -39 3233 3177 2108 118 16 3 chr6 34675858 34676163 -154603391 + AluSx SINE Alu 1 309 -3 267 370 0 43 chr6 34676163 34676245 -154603309 - L2 LINE L2 -95 3177 3102 2214 75 0 0 chr6 34676385 34676704 -154602850 + AluY SINE Alu 1 319 0 795 232 110 84 chr6 34676709 34676775 -154602779 + L1MC5 LINE L1 6973 7036 -925 549 140 50 10 chr6 34676775 34676875 -154602679 + U6 snRNA snRNA 1 104 -3 795 232 110 84 chr6 34676875 34676890 -154602664 + L1MC5 LINE L1 7036 7049 -912 2317 74 0 20 chr6 34676890 34677187 -154602367 + AluSc SINE Alu 1 291 -18 795 232 110 84 chr6 34677187 34677357 -154602197 + L1MC5 LINE L1 7049 7213 -748 2153 81 3 11 chr6 34677357 34677669 -154601885 + AluSc SINE Alu 1 310 0 795 232 110 84 chr6 34677669 34678033 -154601521 + L1MC5 LINE L1 7213 7566 -395 1809 162 3 14 chr6 34678033 34678167 -154601387 + AluJo SINE Alu 1 135 -177 2248 92 3 10 chr6 34678167 34678505 -154601049 + AluSp SINE Alu 1 313 0 1809 162 3 14 chr6 34678505 34678667 -154600887 + AluJo SINE Alu 135 294 -18 795 232 110 84 chr6 34678667 34678773 -154600781 + L1MC5 LINE L1 7566 7723 -238 2313 87 0 7 chr6 34678773 34679082 -154600472 + AluSc SINE Alu 1 307 -2 795 232 110 84 chr6 34679082 34679129 -154600425 + L1MC5 LINE L1 7723 7767 -194 842 256 11 5 chr6 34679129 34679320 -154600234 + AluJo SINE Alu 116 307 -5 347 220 38 30 chr6 34679324 34679375 -154600179 + L1MC5 LINE L1 7771 7820 -141 2236 125 0 0 chr6 34679375 34679687 -154599867 + AluSx SINE Alu 1 312 0 347 220 38 30 chr6 34679687 34679767 -154599787 + L1MC5 LINE L1 7820 7903 -58 2149 114 16 0 chr6 34679800 34680107 -154599447 + AluSx SINE Alu 1 312 0 2302 98 3 0 chr6 34681081 34681387 -154598167 - AluSc SINE Alu -2 307 1 1837 105 124 0 chr6 34681402 34681668 -154597886 - AluSg SINE Alu 0 300 2 2016 151 0 0 chr6 34681706 34682011 -154597543 - AluSx SINE Alu -7 305 1 862 150 0 0 chr6 34682028 34682155 -154597399 - FLAM_C SINE Alu -16 127 1 2240 97 0 0 chr6 34682175 34682474 -154597080 - AluSx SINE Alu -13 299 1 2075 90 30 3 chr6 34682532 34682832 -154596722 + AluY SINE Alu 1 308 -3 321 325 73 7 chr6 34683255 34683406 -154596148 - MIR3 SINE MIR -27 181 21 578 121 12 0 chr6 34683458 34683541 -154596013 - AluJ/FLAM SINE Alu -228 84 1 180 337 60 0 chr6 34684026 34684109 -154595445 - L2 LINE L2 -23 3290 3203 2003 149 0 0 chr6 34684272 34684568 -154594986 - AluSx SINE Alu -16 296 1 2292 91 0 0 chr6 34684614 34684912 -154594642 + AluSg SINE Alu 1 298 -12 2323 74 24 0 chr6 34685185 34685482 -154594072 + AluSq SINE Alu 1 304 -9 449 327 152 0 chr6 34685529 34685740 -154593814 - L2 LINE L2 -847 2467 2225 2120 113 10 0 chr6 34685809 34686102 -154593452 - AluSx SINE Alu -16 296 1 2261 70 10 10 chr6 34686707 34687029 -154592525 + AluY SINE Alu 1 311 0 1953 132 0 38 chr6 34687075 34687393 -154592161 + AluSx SINE Alu 1 306 -6 2206 82 0 0 chr6 34687429 34687709 -154591845 + AluSq SINE Alu 1 280 -33 396 0 0 0 chr6 34687709 34687753 -154591801 + (CA)n Simple_repeat Simple_repeat 1 44 0 2325 81 3 0 chr6 34687768 34688066 -154591488 + AluY SINE Alu 1 299 -12 2170 95 34 0 chr6 34688703 34688997 -154590557 - AluSx SINE Alu -8 304 1 422 298 51 6 chr6 34689948 34690106 -154589448 - MIR3 SINE MIR -29 179 15 189 283 123 28 chr6 34690359 34690465 -154589089 + L3 LINE CR1 1353 1468 -109 223 289 39 70 chr6 34691174 34691271 -154588283 + L2 LINE L2 3189 3283 -30 1946 160 0 3 chr6 34691271 34691583 -154587971 + AluSx SINE Alu 1 311 -1 223 289 39 70 chr6 34691583 34691613 -154587941 + L2 LINE L2 3283 3312 -1 2168 131 45 70 chr6 34691675 34692118 -154587436 + MSTB1 LTR MaLR 1 432 0 2011 128 0 17 chr6 34692146 34692442 -154587112 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 34692444 34692487 -154587067 + (TG)n Simple_repeat Simple_repeat 2 44 0 260 291 55 9 chr6 34692715 34692825 -154586729 - MIR SINE MIR -56 206 92 2299 95 0 0 chr6 34692841 34693145 -154586409 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 34693219 34693249 -154586305 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 34694236 34694306 -154585248 + MIR SINE MIR 189 256 -6 259 245 223 0 chr6 34694569 34694663 -154584891 - L2 LINE L2 0 3313 3199 423 38 0 0 chr6 34694665 34694718 -154584836 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr6 34694753 34694774 -154584780 + (TA)n Simple_repeat Simple_repeat 2 22 0 394 245 49 10 chr6 34696139 34696241 -154583313 - MER5A DNA MER1_type -80 109 4 247 321 109 60 chr6 34696456 34696512 -154583042 - L2 LINE L2 0 3272 3220 2525 224 63 0 chr6 34696512 34697087 -154582467 - MER90 LTR ERV1 0 614 4 247 321 109 60 chr6 34697087 34697397 -154582157 - L2 LINE L2 -52 3220 2888 236 235 71 31 chr6 34697577 34697675 -154581879 - L2 LINE L2 -653 2661 2560 257 195 168 121 chr6 34699292 34699378 -154580176 - MER5A DNA MER1_type -21 168 71 2227 103 3 3 chr6 34699378 34699689 -154579865 - AluY SINE Alu 0 311 1 257 195 168 121 chr6 34699689 34699751 -154579803 - MER5A DNA MER1_type -118 71 13 1791 168 54 3 chr6 34699760 34700111 -154579443 - L1MB3 LINE L1 -2 6181 5813 830 147 0 22 chr6 34700111 34700237 -154579317 - FLAM_C SINE Alu -187 125 1 736 180 7 13 chr6 34700237 34700387 -154579167 - L1MB3 LINE L1 -340 5831 5683 199 267 67 38 chr6 34700966 34701071 -154578483 - L2 LINE L2 -653 2661 2554 472 348 48 5 chr6 34702876 34703086 -154576468 + MIR SINE MIR 12 230 -32 433 311 30 7 chr6 34704325 34704460 -154575094 + MIR SINE MIR 16 153 -55 546 146 27 64 chr6 34712922 34713032 -154566522 + FLAM_C SINE Alu 35 140 -3 201 158 0 0 chr6 34713398 34713436 -154566118 + (CAG)n Simple_repeat Simple_repeat 1 38 0 339 226 24 0 chr6 34713923 34714007 -154565547 - MER94 DNA DNA -16 118 33 268 317 50 20 chr6 34714046 34714147 -154565407 - MIR SINE MIR -27 235 132 550 329 93 66 chr6 34715333 34715698 -154563856 + L2 LINE L2 2898 3272 0 217 365 187 29 chr6 34715920 34716161 -154563393 + L3 LINE CR1 674 952 -625 188 291 35 23 chr6 34718434 34718520 -154561034 + L2 LINE L2 2174 2260 -1054 808 154 0 22 chr6 34718995 34719131 -154560423 + FLAM_C SINE Alu 1 133 0 194 306 16 97 chr6 34720754 34720878 -154558676 - L2 LINE L2 -595 2719 2606 336 281 167 9 chr6 34721556 34721670 -154557884 - MIR SINE MIR -59 203 72 221 296 17 35 chr6 34726076 34726191 -154553363 + C-rich Low_complexity Low_complexity 2 114 0 5162 2 0 0 chr6 34728070 34728618 -154550936 + LTR14 LTR ERVK 1 548 0 31463 1 0 0 chr6 34728618 34733882 -154545672 + HERVKC4 LTR ERVK 1 5262 0 4210 71 16 20 chr6 34733882 34734432 -154545122 + LTR14 LTR ERVK 1 548 0 201 39 0 0 chr6 34736412 34736438 -154543116 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 471 194 16 8 chr6 34739830 34739959 -154539595 + CT-rich Low_complexity Low_complexity 3 132 0 1347 167 59 42 chr6 34740684 34740971 -154538583 + AluJo SINE Alu 1 292 -20 1968 135 20 0 chr6 34741033 34741330 -154538224 + AluSx SINE Alu 1 303 -9 1905 117 13 30 chr6 34741334 34741472 -154538082 + AluSx SINE Alu 1 140 -172 2227 79 3 26 chr6 34741472 34741777 -154537777 + AluY SINE Alu 1 298 -13 1905 117 13 30 chr6 34741777 34741937 -154537617 + AluSx SINE Alu 140 294 -18 5583 76 25 40 chr6 34742077 34743460 -154536094 + SVA Other Other 52 1009 -377 749 71 20 0 chr6 34743513 34743612 -154535942 + AluSq/x SINE Alu 32 132 -180 2092 115 0 7 chr6 34743615 34743920 -154535634 + AluSc SINE Alu 1 303 -6 1251 203 0 114 chr6 34744329 34744679 -154534875 - AluSx SINE Alu -2 310 1 1900 132 17 0 chr6 34744816 34745111 -154534443 - AluJb SINE Alu -12 300 1 325 346 13 38 chr6 34745188 34745347 -154534207 - MER5A DNA MER1_type 0 189 35 233 321 151 20 chr6 34745597 34745896 -154533658 + L2 LINE L2 2153 2490 -824 279 239 214 34 chr6 34752491 34752608 -154526946 + MIR3 SINE MIR 55 192 -16 1650 183 0 31 chr6 34752710 34753027 -154526527 + AluJb SINE Alu 5 311 -1 242 327 18 36 chr6 34753402 34753512 -154526042 - MIR SINE MIR -25 237 130 354 314 99 56 chr6 34753655 34753964 -154525590 - L1MB8 LINE L1 -245 5933 5639 2262 100 0 3 chr6 34753964 34754274 -154525280 - AluSc SINE Alu 0 309 1 354 314 99 56 chr6 34754274 34754557 -154524997 - L1MB8 LINE L1 -539 5639 5311 460 310 0 0 chr6 34754558 34754671 -154524883 - MIR SINE MIR -136 126 14 355 336 0 31 chr6 34758101 34758229 -154521325 + MER91B DNA MER1_type 12 135 -55 319 318 11 0 chr6 34758229 34758317 -154521237 + MER91B DNA MER1_type 100 188 -2 192 346 0 30 chr6 34759265 34759366 -154520188 - MER5B DNA MER1_type -80 98 1 242 326 54 8 chr6 34760880 34761009 -154518545 + L2 LINE L2 2120 2254 -1060 224 337 102 0 chr6 34762508 34762606 -154516948 + MIR3 SINE MIR 95 202 -6 1963 130 0 48 chr6 34762736 34762883 -154516671 + AluSx SINE Alu 1 127 -185 2395 45 10 0 chr6 34762883 34763175 -154516379 + AluY SINE Alu 1 295 -16 1963 130 0 48 chr6 34763175 34763342 -154516212 + AluSx SINE Alu 127 300 -12 1779 160 0 35 chr6 34763360 34763673 -154515881 + AluJb SINE Alu 9 310 -2 404 316 0 0 chr6 34764392 34764544 -154515010 + (CAGAGA)n Simple_repeat Simple_repeat 5 156 0 287 316 119 26 chr6 34765583 34765852 -154513702 - L2 LINE L2 -899 2415 2122 323 258 129 59 chr6 34769210 34769396 -154510158 + MIR3 SINE MIR 1 199 -9 2150 114 3 0 chr6 34774438 34774737 -154504817 + AluSx SINE Alu 5 304 -8 844 221 39 54 chr6 34776233 34776533 -154503021 + L2 LINE L2 2784 3074 -239 514 123 37 0 chr6 34776552 34776633 -154502921 + AluJb SINE Alu 28 111 -201 826 146 70 6 chr6 34776692 34776863 -154502691 + MLT1C LTR MaLR 1 182 -285 735 83 0 0 chr6 34776899 34776995 -154502559 + AluSp/q SINE Alu 206 301 -12 2402 74 3 0 chr6 34776999 34777308 -154502246 + AluSg SINE Alu 1 310 0 1792 147 0 43 chr6 34777317 34777643 -154501911 + AluSx SINE Alu 1 312 0 878 236 78 14 chr6 34777702 34777962 -154501592 + MLT1C LTR MaLR 187 589 -4 189 107 0 0 chr6 34778799 34778827 -154500727 + (ATG)n Simple_repeat Simple_repeat 3 30 0 240 314 141 0 chr6 34778838 34778959 -154500595 - MIR SINE MIR -4 258 121 38 0 0 20 chr6 34779014 34779045 -154500509 + AT_rich Low_complexity Low_complexity 1 32 -16 1904 130 3 23 chr6 34779045 34779346 -154500208 + AluSx SINE Alu 1 295 -17 38 0 0 20 chr6 34779346 34779363 -154500191 + AT_rich Low_complexity Low_complexity 32 48 0 627 231 8 8 chr6 34779373 34779490 -154500064 + FRAM SINE Alu 1 117 -59 195 42 0 0 chr6 34779593 34779617 -154499937 + (A)n Simple_repeat Simple_repeat 1 24 0 1825 136 0 46 chr6 34780026 34780172 -154499382 + AluSx SINE Alu 1 127 -185 2213 85 24 0 chr6 34780172 34780466 -154499088 + AluSp SINE Alu 1 301 -12 1825 136 0 46 chr6 34780466 34780621 -154498933 + AluSx SINE Alu 127 288 -24 501 84 0 0 chr6 34780621 34780692 -154498862 + (TA)n Simple_repeat Simple_repeat 1 71 0 345 346 132 0 chr6 34780695 34780900 -154498654 - MIR SINE MIR -11 251 20 2054 120 0 23 chr6 34781095 34781404 -154498150 - AluSx SINE Alu -4 308 7 949 121 8 0 chr6 34781431 34781563 -154497991 + FLAM_C SINE Alu 1 133 0 186 368 0 0 chr6 34781581 34781638 -154497916 - MIR SINE MIR -136 72 16 2064 103 27 3 chr6 34781908 34782200 -154497354 - AluSx SINE Alu -13 299 1 2102 122 0 3 chr6 34782322 34782633 -154496921 + AluSg SINE Alu 1 310 0 1847 107 56 0 chr6 34783370 34783669 -154495885 + AluSx SINE Alu 1 314 0 234 226 97 0 chr6 34783727 34783789 -154495765 - MIR SINE MIR -79 183 116 1985 120 7 0 chr6 34784079 34784398 -154495156 - AluSq SINE Alu 0 321 1 27 49 0 0 chr6 34784446 34784487 -154495067 + AT_rich Low_complexity Low_complexity 1 41 0 181 319 59 25 chr6 34784560 34784679 -154494875 + L2 LINE L2 3191 3313 0 2451 231 96 25 chr6 34785714 34785972 -154493582 + L1ME3 LINE L1 5429 5667 -495 6764 57 9 31 chr6 34785972 34787619 -154491935 + SVA Other Other 9 1386 0 2451 231 96 25 chr6 34787619 34788043 -154491511 + L1ME3 LINE L1 5667 6162 0 828 188 0 0 chr6 34788367 34788500 -154491054 + FLAM_A SINE Alu 1 133 0 2132 101 3 3 chr6 34788500 34788797 -154490757 + AluSp SINE Alu 1 297 -16 2021 85 44 0 chr6 34788831 34789135 -154490419 - AluSx SINE Alu 0 317 2 2215 104 3 0 chr6 34789136 34789434 -154490120 - AluSg SINE Alu -7 303 5 539 302 88 0 chr6 34789434 34789639 -154489915 - MIR SINE MIR -37 225 3 248 246 87 0 chr6 34790271 34790340 -154489214 - MER116 DNA Mariner 0 80 6 730 158 0 0 chr6 34792131 34792245 -154487309 + AluSg/x SINE Alu 187 300 -9 2235 91 7 3 chr6 34792245 34792543 -154487011 + AluSq SINE Alu 1 299 -14 1324 205 116 32 chr6 34792627 34793032 -154486522 + MLT1J LTR MaLR 1 439 -72 740 257 93 51 chr6 34793122 34793284 -154486270 + MLT1I LTR MaLR 108 285 -124 2288 91 0 0 chr6 34793284 34793582 -154485972 + AluSx SINE Alu 1 298 -14 740 257 93 51 chr6 34793582 34793656 -154485898 + MLT1I LTR MaLR 285 354 -55 954 233 12 33 chr6 34793836 34794081 -154485473 - MLT1H LTR MaLR -296 253 14 464 301 174 17 chr6 34794390 34794626 -154484928 + MLT1J LTR MaLR 239 511 0 2387 59 0 3 chr6 34794777 34795080 -154484474 + AluY SINE Alu 1 302 -9 2349 67 3 22 chr6 34795088 34795404 -154484150 + AluY SINE Alu 1 310 -1 2196 111 0 13 chr6 34796001 34796317 -154483237 - AluSx SINE Alu 0 312 1 1194 231 165 18 chr6 34796668 34797067 -154482487 + LTR16C LTR ERVL 19 476 -15 1057 237 4 4 chr6 34797093 34797321 -154482233 - MIR SINE MIR -33 229 2 304 295 83 68 chr6 34798953 34799350 -154480204 + L1MC4a LINE L1 5665 6067 -1741 2125 102 0 0 chr6 34799432 34799756 -154479798 + AluSq SINE Alu 1 324 0 347 204 66 105 chr6 34799801 34799953 -154479601 - L1MC5 LINE L1 -22 7939 7794 2056 91 56 7 chr6 34799972 34800259 -154479295 - AluSg1 SINE Alu -8 301 1 1627 175 7 36 chr6 34800263 34800572 -154478982 - AluJo SINE Alu -12 300 1 1448 166 11 37 chr6 34800582 34800853 -154478701 - AluJo SINE Alu -20 292 29 2251 97 0 0 chr6 34800953 34801253 -154478301 - AluSx SINE Alu -12 300 1 1342 158 35 13 chr6 34801259 34801585 -154477969 - L1PA16 LINE L1 0 6174 5805 2225 105 3 0 chr6 34801681 34801987 -154477567 - AluSx SINE Alu -5 307 1 694 148 25 25 chr6 34801987 34802109 -154477445 - AluSg/x SINE Alu -7 302 181 488 355 51 16 chr6 34802128 34802295 -154477259 + LTR16C LTR ERVL 166 326 -165 2329 95 0 0 chr6 34802295 34802599 -154476955 - AluSx SINE Alu -8 304 1 488 355 51 16 chr6 34802599 34802744 -154476810 + LTR16C LTR ERVL 326 489 -2 409 109 0 16 chr6 34802951 34803015 -154476539 - Alu SINE Alu -246 64 2 2331 60 10 3 chr6 34803088 34803387 -154476167 - AluY SINE Alu -10 301 1 302 299 34 28 chr6 34803703 34803880 -154475674 - L2 LINE L2 -923 2391 2214 2236 88 7 0 chr6 34804236 34804533 -154475021 - AluSp SINE Alu -14 299 1 2388 84 0 0 chr6 34805203 34805512 -154474042 + AluSx SINE Alu 1 309 -3 42 0 0 0 chr6 34805514 34805556 -154473998 + AT_rich Low_complexity Low_complexity 1 42 0 2314 79 0 3 chr6 34805556 34805860 -154473694 + AluY SINE Alu 1 303 -8 2063 115 0 10 chr6 34807338 34807643 -154471911 - AluSx SINE Alu -10 302 1 228 305 9 19 chr6 34809876 34809981 -154469573 + CT-rich Low_complexity Low_complexity 4 107 0 22 0 0 0 chr6 34810645 34810667 -154468887 + AT_rich Low_complexity Low_complexity 1 22 0 1945 95 95 7 chr6 34811225 34811509 -154468045 - AluSg SINE Alu -1 309 1 365 303 125 7 chr6 34811962 34812114 -154467440 + MIR SINE MIR 19 188 -74 852 131 7 36 chr6 34812846 34812983 -154466571 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chr6 34812983 34813014 -154466540 + AT_rich Low_complexity Low_complexity 1 31 0 218 352 21 7 chr6 34813101 34813246 -154466308 + CT-rich Low_complexity Low_complexity 2 148 0 355 305 31 8 chr6 34813824 34813952 -154465602 + MIR3 SINE MIR 15 145 -63 214 318 45 8 chr6 34816406 34816538 -154463016 + G-rich Low_complexity Low_complexity 2 138 0 1317 268 49 24 chr6 34819731 34820234 -154459320 - L1ME3A LINE L1 -63 6107 5535 616 303 131 50 chr6 34820390 34821017 -154458537 - L2 LINE L2 0 3313 2550 1910 152 0 7 chr6 34821017 34821320 -154458234 + AluJo SINE Alu 1 301 -11 616 303 131 50 chr6 34821320 34821740 -154457814 - L2 LINE L2 -763 2550 2165 272 133 0 0 chr6 34821766 34821811 -154457743 + MER5B DNA MER1_type 16 60 -118 431 253 0 0 chr6 34821813 34821912 -154457642 - MER3 DNA MER1_type -76 133 35 2226 98 3 3 chr6 34821923 34822228 -154457326 + AluSx SINE Alu 1 305 -7 397 316 77 37 chr6 34822228 34822489 -154457065 - L2 LINE L2 -1325 1989 1715 2161 103 0 40 chr6 34822494 34822815 -154456739 - AluSx SINE Alu -4 308 1 1970 224 63 98 chr6 34822817 34823007 -154456547 - L1ME3 LINE L1 -12 6150 5955 2178 121 0 0 chr6 34823007 34823314 -154456240 - AluSc SINE Alu -2 307 1 1970 224 63 98 chr6 34823314 34823930 -154455624 - L1ME3 LINE L1 -207 5955 5372 1788 163 3 3 chr6 34823932 34824226 -154455328 + AluJo SINE Alu 3 296 -16 1167 129 29 43 chr6 34824232 34824365 -154455189 + AluSx SINE Alu 5 135 -177 2173 86 3 3 chr6 34824365 34824657 -154454897 + AluY SINE Alu 1 292 -19 1167 129 29 43 chr6 34824657 34824732 -154454822 + AluSx SINE Alu 135 210 -102 2149 96 16 0 chr6 34824851 34825154 -154454400 - AluSq SINE Alu -5 308 1 1815 164 10 6 chr6 34825197 34825508 -154454046 - AluJb SINE Alu 0 312 1 750 268 42 65 chr6 34825526 34825549 -154454005 - L1ME3 LINE L1 -1042 5104 5082 2094 126 0 0 chr6 34825549 34825850 -154453704 + AluSx SINE Alu 1 301 -11 750 268 42 65 chr6 34825850 34826180 -154453374 - L1ME3 LINE L1 -1064 5082 4759 598 196 23 60 chr6 34826292 34826425 -154453129 + FLAM_A SINE Alu 1 128 -5 2060 114 7 0 chr6 34826429 34826719 -154452835 + AluSx SINE Alu 7 298 -14 354 275 152 85 chr6 34826818 34827175 -154452379 - L2 LINE L2 0 3313 2888 2182 93 3 0 chr6 34827175 34827498 -154452056 + AluSp SINE Alu 1 324 0 354 275 152 85 chr6 34827498 34827659 -154451895 - L2 LINE L2 -425 2888 2739 362 242 73 73 chr6 34828203 34828327 -154451227 - MER91A DNA MER1_type -3 193 70 506 277 125 40 chr6 34831044 34831420 -154448134 - L3 LINE CR1 -78 1499 1092 255 229 14 0 chr6 34831543 34831613 -154447941 - L1ME4a LINE L1 -6 6115 6045 532 282 120 53 chr6 34831653 34831829 -154447725 - L3 LINE CR1 -730 847 684 2016 126 0 19 chr6 34831829 34832146 -154447408 - AluJb SINE Alu -1 311 1 532 282 120 53 chr6 34832146 34832327 -154447227 - L3 LINE CR1 -893 684 466 368 335 41 46 chr6 34832590 34832787 -154446767 - L1ME4a LINE L1 0 6121 5926 1320 123 0 10 chr6 34833232 34833427 -154446127 - AluSq SINE Alu 0 313 121 1076 191 5 5 chr6 34833654 34833842 -154445712 + MER5A DNA MER1_type 1 188 -1 2086 119 14 0 chr6 34834179 34834472 -154445082 + AluSq SINE Alu 1 297 -16 2461 60 3 0 chr6 34834543 34834843 -154444711 + AluSp SINE Alu 1 301 -12 324 319 53 18 chr6 34835730 34835843 -154443711 + L2 LINE L2 3188 3304 -9 864 217 48 10 chr6 34836215 34836422 -154443132 + MIR SINE MIR 28 242 -20 219 109 43 43 chr6 34837991 34838037 -154441517 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr6 34838286 34838338 -154441216 + GC_rich Low_complexity Low_complexity 1 52 0 300 324 71 19 chr6 34841602 34841812 -154437742 - L2 LINE L2 -203 3069 2849 1704 112 13 69 chr6 34841998 34842301 -154437253 + AluJo SINE Alu 11 296 -16 423 345 147 21 chr6 34842582 34843113 -154436441 - L2 LINE L2 -1104 2210 1613 732 318 5 5 chr6 34843359 34843554 -154436000 - MER91A DNA MER1_type 0 196 2 882 225 43 10 chr6 34845230 34845439 -154434115 + MIR SINE MIR 1 216 -46 2473 74 0 0 chr6 34845440 34845751 -154433803 + AluY SINE Alu 1 311 0 676 195 87 7 chr6 34847067 34847216 -154432338 + MIR SINE MIR 76 236 -26 563 98 0 33 chr6 34847321 34847413 -154432141 + 5S rRNA rRNA 2 90 -31 2186 112 3 6 chr6 34847471 34847784 -154431770 - AluSx SINE Alu 0 312 1 950 42 35 7 chr6 34847795 34847938 -154431616 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 2094 108 0 0 chr6 34847947 34848216 -154431338 - AluSx SINE Alu -43 269 1 269 300 51 87 chr6 34848857 34848949 -154430605 + MIR3 SINE MIR 1 95 -166 2349 103 0 0 chr6 34848949 34849261 -154430293 - AluSx SINE Alu 0 312 1 269 300 51 87 chr6 34849261 34849378 -154430176 + MIR3 SINE MIR 95 203 -58 1597 273 157 23 chr6 34850221 34850981 -154428573 - L2 LINE L2 0 3313 2375 2178 92 3 0 chr6 34850981 34851274 -154428280 + AluSp SINE Alu 1 294 -19 1597 273 157 23 chr6 34851274 34851469 -154428085 - L2 LINE L2 -938 2375 2208 1917 102 40 30 chr6 34851638 34851942 -154427612 + AluSx SINE Alu 2 308 -4 1597 202 39 30 chr6 34852879 34852993 -154426561 - Charlie4a DNA MER1_type -1487 474 363 1990 100 71 4 chr6 34852993 34853273 -154426281 - AluSq SINE Alu -14 299 1 1597 202 39 30 chr6 34853273 34853594 -154425960 - Charlie4a DNA MER1_type -1598 363 35 1939 122 40 14 chr6 34854095 34854391 -154425163 + AluSg SINE Alu 7 310 0 668 215 71 18 chr6 34856503 34856728 -154422826 - L1ME1 LINE L1 -119 6047 5806 303 226 164 7 chr6 34858609 34858755 -154420799 - L1MC5 LINE L1 -6 7955 7787 934 32 16 8 chr6 34858774 34858900 -154420654 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1751 145 14 21 chr6 34858902 34859185 -154420369 - AluJb SINE Alu -31 281 1 1274 198 67 0 chr6 34859201 34859529 -154420025 - L1MB7 LINE L1 -9 6175 5826 279 0 0 0 chr6 34859546 34859577 -154419977 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1631 182 0 7 chr6 34859577 34859857 -154419697 - AluJo SINE Alu -24 288 11 328 239 49 84 chr6 34859919 34860027 -154419527 - L1MC5 LINE L1 -175 7786 7676 1971 118 6 29 chr6 34860027 34860146 -154419408 + AluSx SINE Alu 1 121 -191 183 42 0 0 chr6 34860146 34860170 -154419384 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1971 118 6 29 chr6 34860170 34860365 -154419189 + AluSx SINE Alu 121 308 -4 328 239 49 84 chr6 34860365 34860519 -154419035 - L1MC5 LINE L1 -285 7676 7533 757 279 5 0 chr6 34860526 34860716 -154418838 - L2 LINE L2 -239 3074 2884 265 272 71 112 chr6 34861379 34861465 -154418089 + MIR SINE MIR 20 97 -165 2291 97 0 3 chr6 34861465 34861773 -154417781 + AluSx SINE Alu 3 309 -3 265 272 71 112 chr6 34861773 34861855 -154417699 + MIR SINE MIR 97 181 -81 2203 109 0 25 chr6 34862550 34862870 -154416684 - AluSx SINE Alu 0 312 1 2215 71 7 0 chr6 34862878 34863202 -154416352 - AluY SINE Alu 0 326 1 557 294 165 47 chr6 34864878 34865037 -154414517 + L1ME4a LINE L1 5712 5851 -270 2121 112 7 0 chr6 34865037 34865332 -154414222 + AluSx SINE Alu 1 297 -15 557 294 165 47 chr6 34865332 34865536 -154414018 + L1ME4a LINE L1 5851 6118 -3 2345 91 10 0 chr6 34865614 34865923 -154413631 - AluSp SINE Alu -1 312 1 2290 115 0 0 chr6 34866527 34866839 -154412715 - AluSx SINE Alu 0 312 1 328 351 56 16 chr6 34867114 34867365 -154412189 - L1MB7 LINE L1 -297 5824 5564 208 291 47 63 chr6 34868183 34868310 -154411244 - L2 LINE L2 -252 3020 2896 216 271 77 82 chr6 34868496 34868666 -154410888 - L2 LINE L2 -653 2661 2493 394 245 49 10 chr6 34870256 34870358 -154409196 - MER5A DNA MER1_type -80 109 4 247 321 109 60 chr6 34870573 34870629 -154408925 - L2 LINE L2 0 3272 3220 2525 224 63 0 chr6 34870629 34871204 -154408350 - MER90 LTR ERV1 0 614 4 247 321 109 60 chr6 34871204 34871514 -154408040 - L2 LINE L2 -52 3220 2888 236 235 71 31 chr6 34871694 34871792 -154407762 - L2 LINE L2 -653 2661 2560 257 195 168 121 chr6 34873409 34873495 -154406059 - MER5A DNA MER1_type -21 168 71 2227 103 3 3 chr6 34873495 34873806 -154405748 - AluY SINE Alu 0 311 1 257 195 168 121 chr6 34873806 34873868 -154405686 - MER5A DNA MER1_type -118 71 13 1791 168 54 3 chr6 34873877 34874228 -154405326 - L1MB3 LINE L1 -2 6181 5813 830 147 0 22 chr6 34874228 34874354 -154405200 - FLAM_C SINE Alu -187 125 1 736 180 7 13 chr6 34874354 34874504 -154405050 - L1MB3 LINE L1 -340 5831 5683 199 267 67 38 chr6 34875083 34875188 -154404366 - L2 LINE L2 -653 2661 2554 472 348 48 5 chr6 34876993 34877203 -154402351 + MIR SINE MIR 12 230 -32 433 311 30 7 chr6 34878442 34878577 -154400977 + MIR SINE MIR 16 153 -55 1126 138 0 0 chr6 34885394 34885561 -154393993 + AluSp SINE Alu 137 303 -10 220 293 80 0 chr6 34885703 34885778 -154393776 + MIR3 SINE MIR 124 204 -4 2353 83 3 0 chr6 34887955 34888257 -154391297 + AluY SINE Alu 1 303 -8 605 158 41 94 chr6 34888268 34888348 -154391206 - MIR SINE MIR -27 235 152 1351 112 79 0 chr6 34888348 34888563 -154390991 - MER46A DNA MER2_type -2 234 3 1844 155 7 23 chr6 34888563 34888732 -154390822 - AluSx SINE Alu -8 304 134 215 30 0 30 chr6 34888732 34888765 -154390789 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2224 92 0 0 chr6 34888765 34889046 -154390508 - AluY SINE Alu -30 281 1 1844 155 7 23 chr6 34889046 34889184 -154390370 - AluSx SINE Alu -176 136 1 605 158 41 94 chr6 34889184 34889273 -154390281 - MIR SINE MIR -108 154 74 930 177 55 11 chr6 34890164 34890345 -154389209 + MER5A DNA MER1_type 1 189 0 2553 52 0 0 chr6 34890348 34890656 -154388898 + AluY SINE Alu 1 308 -3 233 194 15 75 chr6 34890693 34890760 -154388794 - MIR SINE MIR -64 144 82 349 130 19 0 chr6 34893417 34893471 -154386083 - L2 LINE L2 -13 3300 3246 2135 140 33 9 chr6 34893844 34894173 -154385381 + MER1B DNA MER1_type 1 337 0 416 241 247 0 chr6 34894347 34894509 -154385045 - MIR SINE MIR 0 262 61 801 169 15 0 chr6 34894682 34894812 -154384742 - AluJb SINE Alu -5 307 176 2130 115 3 3 chr6 34894947 34895251 -154384303 - AluSx SINE Alu -8 304 1 229 283 0 0 chr6 34895292 34895345 -154384209 - L2 LINE L2 -6 3307 3255 315 318 0 38 chr6 34898089 34898221 -154381333 + C-rich Low_complexity Low_complexity 3 129 0 237 115 33 33 chr6 34898226 34898287 -154381267 + CT-rich Low_complexity Low_complexity 3 63 0 21 57 0 0 chr6 34898570 34898605 -154380949 + GC_rich Low_complexity Low_complexity 1 35 0 597 177 65 24 chr6 34900872 34900996 -154378558 + FLAM_A SINE Alu 1 129 -4 243 79 0 0 chr6 34902801 34902839 -154376715 + (TTG)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr6 34902839 34902859 -154376695 + (TGG)n Simple_repeat Simple_repeat 3 22 0 2151 100 3 50 chr6 34906433 34906754 -154372800 + AluSp SINE Alu 1 306 -7 201 307 6 50 chr6 34912656 34912835 -154366719 + G-rich Low_complexity Low_complexity 2 172 0 376 290 145 8 chr6 34914244 34914375 -154365179 - L2 LINE L2 -4 3309 3161 383 172 16 0 chr6 34914390 34914454 -154365100 - MER5A DNA MER1_type 0 189 125 680 178 0 0 chr6 34914454 34914561 -154364993 + FLAM_C SINE Alu 1 107 -36 442 190 0 0 chr6 34914566 34914645 -154364909 - MER5A DNA MER1_type -51 138 60 377 301 283 12 chr6 34914744 34915077 -154364477 - L2 LINE L2 -292 2980 2560 413 311 130 34 chr6 34915812 34915999 -154363555 + MIR SINE MIR 2 218 -44 1389 157 63 47 chr6 34915999 34916136 -154363418 - MER33 DNA MER1_type -2261 324 191 2363 84 0 0 chr6 34916136 34916434 -154363120 - AluSg SINE Alu -12 298 1 1389 157 63 47 chr6 34916434 34916614 -154362940 - MER33 DNA MER1_type -2394 191 2 413 311 130 34 chr6 34916614 34916664 -154362890 + MIR SINE MIR 218 262 0 204 143 0 0 chr6 34916994 34917036 -154362518 + (CTG)n Simple_repeat Simple_repeat 3 44 0 188 345 0 0 chr6 34918571 34918626 -154360928 - MIR3 SINE MIR -8 200 146 1200 113 0 27 chr6 34922643 34922828 -154356726 - AluSp SINE Alu 0 313 134 189 0 0 0 chr6 34922828 34922849 -154356705 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2242 76 6 19 chr6 34922879 34923195 -154356359 - AluSx SINE Alu 0 312 1 2079 89 4 7 chr6 34923251 34923564 -154355990 + AluSg SINE Alu 1 312 0 2083 144 0 0 chr6 34925942 34926254 -154353300 + AluSx SINE Alu 1 312 0 261 273 39 0 chr6 34926366 34926443 -154353111 + L1MC4 LINE L1 7403 7482 -560 1079 61 0 0 chr6 34926444 34926576 -154352978 + AluSq/x SINE Alu 1 132 -180 2153 88 17 0 chr6 34926578 34926873 -154352681 + AluSx SINE Alu 1 300 -12 2093 94 7 0 chr6 34926873 34927149 -154352405 + AluSq SINE Alu 1 278 -35 180 0 0 0 chr6 34927153 34927173 -154352381 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 268 222 148 0 chr6 34927173 34927281 -154352273 + L1MC4 LINE L1 7615 7738 -304 414 225 7 20 chr6 34927342 34927458 -154352096 + L1MC4 LINE L1 7894 8009 -33 1879 128 40 0 chr6 34927458 34927731 -154351823 - AluJb SINE Alu -14 298 15 414 225 7 20 chr6 34927731 34927765 -154351789 + L1MC4 LINE L1 8009 8042 0 2093 98 17 0 chr6 34927778 34928073 -154351481 - AluSx SINE Alu -12 300 1 2265 62 0 7 chr6 34928117 34928406 -154351148 + AluY SINE Alu 1 287 -24 2207 106 3 3 chr6 34928442 34928745 -154350809 + AluY SINE Alu 1 303 -8 241 204 0 0 chr6 34928880 34928929 -154350625 + L2 LINE L2 2719 2767 -547 784 181 42 42 chr6 34928929 34928988 -154350566 + L1MB3 LINE L1 5946 6004 -179 198 0 0 0 chr6 34928988 34929010 -154350544 + (TA)n Simple_repeat Simple_repeat 2 23 0 2331 83 7 0 chr6 34929010 34929310 -154350244 - AluSp SINE Alu -11 302 1 784 181 42 42 chr6 34929310 34929487 -154350067 + L1MB3 LINE L1 6002 6183 0 979 273 154 8 chr6 34929491 34929962 -154349592 + L2 LINE L2 2771 3312 -1 616 192 73 0 chr6 34930151 34930302 -154349252 + L1MD3 LINE L1 7832 7993 -2 1976 127 28 0 chr6 34930950 34931234 -154348320 + AluSx SINE Alu 1 292 -20 1877 134 14 14 chr6 34931271 34931563 -154347991 - AluSx SINE Alu -19 293 2 748 259 86 14 chr6 34931563 34931783 -154347771 - MIR SINE MIR 0 262 27 1239 203 18 0 chr6 34931787 34932004 -154347550 + MER58A DNA MER1_type 2 222 -2 2239 95 3 0 chr6 34932057 34932352 -154347202 + AluSx SINE Alu 1 296 -16 213 108 0 0 chr6 34932844 34932881 -154346673 + (CA)n Simple_repeat Simple_repeat 1 37 0 268 283 8 50 chr6 34932881 34932992 -154346562 - MIR SINE MIR -122 140 33 225 163 0 0 chr6 34936444 34936493 -154343061 + C-rich Low_complexity Low_complexity 1 49 0 258 316 0 54 chr6 34936654 34936822 -154342732 + C-rich Low_complexity Low_complexity 4 162 0 198 103 0 0 chr6 34937638 34937667 -154341887 + (CCA)n Simple_repeat Simple_repeat 1 29 0 193 73 24 24 chr6 34937887 34937928 -154341626 + (CCG)n Simple_repeat Simple_repeat 2 42 0 252 363 0 0 chr6 34940775 34940866 -154338688 - L2 LINE L2 -43 3270 3180 2200 93 3 0 chr6 34940999 34941290 -154338264 + AluSq SINE Alu 1 292 -21 255 351 116 31 chr6 34941752 34942262 -154337292 + L2 LINE L2 2303 2855 -459 498 233 0 0 chr6 34942583 34942686 -154336868 + MER5B DNA MER1_type 1 103 -75 1382 167 29 78 chr6 34942694 34942831 -154336723 + AluJb SINE Alu 10 152 -160 1829 57 4 4 chr6 34942831 34943061 -154336493 + AluY SINE Alu 74 303 -8 2193 112 0 0 chr6 34943069 34943373 -154336181 + AluSx SINE Alu 1 304 -8 1382 167 29 78 chr6 34943373 34943532 -154336022 + AluJb SINE Alu 159 300 -12 420 139 38 13 chr6 34943532 34943611 -154335943 + MER5B DNA MER1_type 96 176 -2 2323 82 0 0 chr6 34944024 34944318 -154335236 + AluY SINE Alu 1 294 -17 2096 117 10 0 chr6 34944559 34944868 -154334686 - AluSq SINE Alu -1 312 1 770 122 8 16 chr6 34944868 34944985 -154334569 - FRAM SINE Alu -7 169 54 1744 148 9 49 chr6 34944994 34945178 -154334376 - AluSx SINE Alu 0 312 122 2194 77 0 35 chr6 34945178 34945489 -154334065 - AluY SINE Alu -11 300 1 2150 109 10 3 chr6 34945491 34945802 -154333752 - AluSq SINE Alu 0 313 1 1744 148 9 49 chr6 34945802 34945939 -154333615 - AluSx SINE Alu -191 121 1 1388 270 259 12 chr6 34945946 34946776 -154332778 + L2 LINE L2 675 1709 -1605 2295 77 24 0 chr6 34946918 34947215 -154332339 - AluSx SINE Alu -4 308 5 607 264 153 8 chr6 34947292 34947546 -154332008 + L2 LINE L2 1649 1939 -1375 341 311 18 86 chr6 34947547 34947769 -154331785 + PABL_B LTR ERV1 1 207 -460 1781 80 0 0 chr6 34947915 34948140 -154331414 - AluSp SINE Alu -88 225 1 416 218 30 10 chr6 34948140 34948241 -154331313 - L1M4 LINE L1 -511 5667 5565 2185 237 110 11 chr6 34948249 34949198 -154330356 + L1MDa LINE L1 34 1210 -5330 2063 122 3 0 chr6 34949207 34949501 -154330053 + AluSx SINE Alu 1 295 -17 2071 139 0 0 chr6 34949509 34949804 -154329750 + AluSx SINE Alu 1 295 -17 1020 114 49 204 chr6 34949835 34949913 -154329641 + AluJb SINE Alu 51 139 -173 276 30 0 0 chr6 34949913 34949946 -154329608 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1020 114 49 204 chr6 34949946 34950175 -154329379 + AluJb SINE Alu 139 310 -2 1485 186 87 41 chr6 34950177 34950260 -154329294 + L1MDa LINE L1 1203 1281 -5259 2136 113 7 3 chr6 34950260 34950569 -154328985 + AluSq SINE Alu 1 310 -3 1485 186 87 41 chr6 34950569 34950921 -154328633 + L1MDa LINE L1 1281 1658 -4882 833 152 78 29 chr6 34950916 34951120 -154328434 - L1M4 LINE L1 -751 5395 5182 * 2114 139 7 0 chr6 34951169 34951479 -154328075 - AluSx SINE Alu 0 312 1 388 127 14 0 chr6 34951479 34951550 -154328004 - L1M4 LINE L1 -948 5198 5127 1119 158 5 68 chr6 34951557 34951778 -154327776 + AluJo SINE Alu 87 293 -19 640 189 6 47 chr6 34951783 34951952 -154327602 - L1M4 LINE L1 -1022 5124 4963 * 1990 199 5 12 chr6 34951950 34952381 -154327173 - L1M4 LINE L1 -3118 3028 2601 702 238 65 0 chr6 34952385 34952553 -154327001 + LTR16A LTR ERVL 86 264 -186 283 291 8 68 chr6 34952671 34952788 -154326766 - L2 LINE L2 -620 2694 2585 2476 87 0 0 chr6 34952871 34953183 -154326371 - AluSx SINE Alu 0 312 1 1837 146 11 0 chr6 34953183 34953463 -154326091 - AluSx SINE Alu -29 283 1 205 360 0 0 chr6 34953576 34953662 -154325892 + L2 LINE L2 3182 3267 -5 2224 214 144 70 chr6 34954071 34954434 -154325120 - L2 LINE L2 -74 3239 2904 2017 111 27 0 chr6 34954434 34954732 -154324822 + AluY SINE Alu 5 310 -1 2224 214 144 70 chr6 34954732 34955021 -154324533 - L2 LINE L2 -409 2904 2638 2714 16 0 0 chr6 34955021 34955326 -154324228 - AluYb8 SINE Alu -13 305 1 2224 214 144 70 chr6 34955326 34955770 -154323784 - L2 LINE L2 -675 2638 2061 1725 167 3 3 chr6 34955843 34956142 -154323412 - AluJb SINE Alu -5 307 9 615 284 88 64 chr6 34957007 34957395 -154322159 + L1ME LINE L1 5311 5707 -414 2041 106 33 13 chr6 34957397 34957700 -154321854 + AluSx SINE Alu 3 311 -1 887 182 6 23 chr6 34957744 34957920 -154321634 + FRAM SINE Alu 1 165 -11 2053 221 9 27 chr6 34958055 34958128 -154321426 + L1MC4 LINE L1 7501 7574 -468 1918 105 59 3 chr6 34958128 34958414 -154321140 + AluSq SINE Alu 1 302 -11 2053 221 9 27 chr6 34958414 34958892 -154320662 + L1MC4 LINE L1 7574 8042 0 261 0 0 0 chr6 34960027 34960056 -154319498 + (CTG)n Simple_repeat Simple_repeat 2 30 0 301 262 41 35 chr6 34960949 34961094 -154318460 + GA-rich Low_complexity Low_complexity 2 147 0 550 318 27 18 chr6 34961923 34962143 -154317411 + MIR SINE MIR 8 229 -33 376 235 51 10 chr6 34962213 34962311 -154317243 - MIR SINE MIR -69 139 38 274 228 219 26 chr6 34964521 34964635 -154314919 - MER91C DNA MER1_type -2 138 3 940 227 100 0 chr6 34964918 34965138 -154314416 - MIR SINE MIR -19 243 2 804 253 10 10 chr6 34966313 34966511 -154313043 - MIR SINE MIR -1 261 64 244 261 15 0 chr6 34967087 34967152 -154312402 - MER91B DNA MER1_type -113 77 12 193 335 148 70 chr6 34967258 34967511 -154312043 - L2 LINE L2 0 3272 2993 2189 117 0 13 chr6 34967511 34967647 -154311907 + AluSx SINE Alu 1 137 -175 2002 93 0 0 chr6 34967647 34967916 -154311638 + AluY SINE Alu 35 303 -8 2189 117 0 13 chr6 34967916 34968095 -154311459 + AluSx SINE Alu 137 312 0 193 335 148 70 chr6 34968095 34968125 -154311429 - L2 LINE L2 -279 2993 2967 274 326 39 23 chr6 34968160 34968289 -154311265 - L2 LINE L2 -263 3009 2879 2032 104 7 0 chr6 34969022 34969300 -154310254 + AluSx SINE Alu 16 295 -17 391 240 58 16 chr6 34969300 34969421 -154310133 - L2 LINE L2 -20 3293 3168 456 67 0 0 chr6 34969433 34969493 -154310061 + (TA)n Simple_repeat Simple_repeat 2 61 0 219 277 10 40 chr6 34969983 34970084 -154309470 + G-rich Low_complexity Low_complexity 2 99 0 * 243 235 20 0 chr6 34970034 34970085 -154309469 + GA-rich Low_complexity Low_complexity 3 54 0 846 209 99 9 chr6 34970368 34970579 -154308975 + AluJb SINE Alu 82 311 -1 1954 101 21 31 chr6 34972315 34972652 -154306902 - AluSx SINE Alu 0 334 1 1944 118 0 4 chr6 34972672 34972982 -154306572 - AluSg SINE Alu 0 309 1 621 339 79 20 chr6 34973306 34973887 -154305667 + L2 LINE L2 2468 3089 -183 208 268 99 0 chr6 34973887 34973958 -154305596 - MIR SINE MIR -171 91 14 2215 112 45 52 chr6 34973989 34974051 -154305503 - L1MA4 LINE L1 0 6300 6239 2009 130 10 3 chr6 34974051 34974358 -154305196 - AluSx SINE Alu -1 311 3 2215 112 45 52 chr6 34974358 34974696 -154304858 - L1MA4 LINE L1 -61 6239 5903 6903 139 35 26 chr6 34974782 34975202 -154304352 - L1MA4 LINE L1 -380 5920 5505 1948 159 0 3 chr6 34975202 34975510 -154304044 - AluSx SINE Alu -5 307 1 6903 139 35 26 chr6 34975510 34975936 -154303618 - L1MA4 LINE L1 -795 5505 5085 1741 108 90 7 chr6 34975936 34976213 -154303341 - AluSg SINE Alu -10 300 1 6903 139 35 26 chr6 34976213 34976299 -154303255 - L1MA4 LINE L1 -1215 5085 5001 2079 107 0 44 chr6 34976299 34976617 -154302937 - AluSq SINE Alu -9 304 1 6903 139 35 26 chr6 34976617 34976730 -154302824 - L1MA4 LINE L1 -1299 5001 4891 2299 87 7 3 chr6 34976730 34977039 -154302515 + AluSg SINE Alu 1 310 0 6903 139 35 26 chr6 34977039 34977900 -154301654 - L1MA4 LINE L1 -1409 4891 3984 2133 99 0 30 chr6 34977911 34978213 -154301341 - AluSx SINE Alu -19 293 1 2412 84 0 0 chr6 34978383 34978693 -154300861 - AluSg SINE Alu 0 310 1 417 258 43 63 chr6 34978899 34979113 -154300441 + MIR SINE MIR 1 206 -44 389 333 47 0 chr6 34979134 34979263 -154300291 + L2 LINE L2 3137 3271 -1 2221 96 7 0 chr6 34980757 34981058 -154298496 + AluSp SINE Alu 1 303 -10 242 329 0 0 chr6 34981120 34981193 -154298361 - L1ME LINE L1 -321 5849 5777 214 293 80 0 chr6 34981200 34981275 -154298279 + MIR3 SINE MIR 124 204 -4 2330 83 3 0 chr6 34983452 34983754 -154295800 + AluY SINE Alu 1 303 -8 601 158 41 94 chr6 34983765 34983845 -154295709 - MIR SINE MIR -27 235 152 1368 112 79 0 chr6 34983845 34984060 -154295494 - MER46A DNA MER2_type -2 234 3 1813 155 7 23 chr6 34984060 34984229 -154295325 - AluSx SINE Alu -8 304 134 215 30 0 30 chr6 34984229 34984262 -154295292 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2193 92 0 0 chr6 34984262 34984543 -154295011 - AluY SINE Alu -30 281 1 1302 155 0 15 chr6 34984481 34984681 -154294873 - AluSx SINE Alu -115 197 1 1813 155 7 23 chr6 34984543 34984681 -154294873 - AluSx SINE Alu -176 136 1 601 158 41 94 chr6 34984681 34984770 -154294784 - MIR SINE MIR -108 154 74 916 177 55 11 chr6 34985661 34985842 -154293712 + MER5A DNA MER1_type 1 189 0 2650 52 0 0 chr6 34985845 34986153 -154293401 + AluY SINE Alu 1 308 -3 227 194 15 75 chr6 34986190 34986257 -154293297 - MIR SINE MIR -64 144 82 352 130 19 0 chr6 34988914 34988968 -154290586 - L2 LINE L2 -13 3300 3246 2071 140 33 9 chr6 34989341 34989670 -154289884 + MER1B DNA MER1_type 1 337 0 404 235 247 0 chr6 34989844 34990006 -154289548 - MIR SINE MIR 0 262 61 770 169 15 0 chr6 34990179 34990309 -154289245 - AluJb SINE Alu -5 307 176 2188 115 3 3 chr6 34990444 34990748 -154288806 - AluSx SINE Alu -8 304 1 228 283 0 0 chr6 34990789 34990842 -154288712 - L2 LINE L2 -6 3307 3255 803 246 54 76 chr6 34992604 34993067 -154286487 - L1ME LINE L1 -2059 5749 5297 869 269 178 14 chr6 34993118 34993380 -154286174 + L2 LINE L2 2473 2691 -622 1690 143 29 25 chr6 34993380 34993691 -154285863 - AluJo SINE Alu 0 312 1 869 269 178 14 chr6 34993691 34994142 -154285412 + L2 LINE L2 2691 3312 -1 3939 121 40 0 chr6 34994247 34994359 -154285195 + L1PA16 LINE L1 5521 5627 -568 249 33 0 0 chr6 34994359 34994389 -154285165 + (TA)n Simple_repeat Simple_repeat 1 30 0 3939 121 40 0 chr6 34994389 34994926 -154284628 + L1PA16 LINE L1 5627 6195 0 310 309 68 19 chr6 34994969 34995131 -154284423 - L1ME LINE L1 -1098 5048 4879 304 262 119 0 chr6 34995131 34995215 -154284339 + MER106B DNA MER1_type 1 94 -965 304 29 0 0 chr6 34995251 34995285 -154284269 - L1P LINE L1 -1844 4302 4269 315 205 27 98 chr6 34995285 34995397 -154284157 + MER106B DNA MER1_type 906 1009 -50 376 269 119 73 chr6 34995397 34995851 -154283703 - L1ME LINE L1 -1370 4776 4302 13908 96 12 3 chr6 34996052 34998797 -154280757 - L1PA8 LINE L1 0 6487 3716 12388 124 9 60 chr6 34998797 35000412 -154279142 - L1PA8 LINE L1 -3609 2852 1322 2134 125 27 0 chr6 35000412 35000707 -154278847 - AluSg SINE Alu -7 303 1 12388 124 9 60 chr6 35000707 35001958 -154277596 - L1PA8 LINE L1 -5139 1322 8 231 228 0 0 chr6 35002133 35002190 -154277364 - L1M2 LINE L1 -3958 2891 2835 2016 148 0 19 chr6 35002428 35002746 -154276808 - AluSx SINE Alu 0 312 1 734 247 105 43 chr6 35002831 35003345 -154276209 - L1MEd LINE L1 -898 1592 948 371 130 0 0 chr6 35003458 35003512 -154276042 - MSTA-int LTR MaLR -1597 54 1 2315 104 149 8 chr6 35003512 35003887 -154275667 - MSTA LTR MaLR 0 428 1 916 37 0 0 chr6 35003887 35003994 -154275560 + MER66A-int LTR ERV1 6570 6676 0 1475 187 75 81 chr6 35004057 35004490 -154275064 + MER66A LTR ERV1 98 478 0 2685 110 49 53 chr6 35004490 35004509 -154275045 + L1MA8 LINE L1 5762 5780 -511 552 68 0 0 chr6 35004509 35004582 -154274972 + (TA)n Simple_repeat Simple_repeat 1 73 0 2685 110 49 53 chr6 35004582 35005088 -154274466 + L1MA8 LINE L1 5780 6285 -6 1671 184 14 0 chr6 35005236 35005524 -154274030 + AluJb SINE Alu 1 292 -20 240 208 92 42 chr6 35005531 35005651 -154273903 + L1MEc LINE L1 2151 2276 -4120 4631 105 18 1 chr6 35005692 35006356 -154273198 - L1PB1 LINE L1 -1 6150 5476 14095 187 13 13 chr6 35006920 35009959 -154269595 - L1PB1 LINE L1 -692 5459 2420 324 167 0 17 chr6 35010075 35010135 -154269419 + AluJ/FLAM SINE Alu 1 59 -243 1833 103 4 12 chr6 35010178 35010431 -154269123 + AluSq SINE Alu 55 305 -8 642 200 9 0 chr6 35010723 35010833 -154268721 + FLAM_A SINE Alu 5 115 -18 243 0 0 0 chr6 35010836 35010863 -154268691 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2321 85 3 3 chr6 35010907 35011200 -154268354 + AluY SINE Alu 1 293 -18 2274 110 3 0 chr6 35011205 35011504 -154268050 + AluSg SINE Alu 1 300 -10 2305 92 0 35 chr6 35011952 35012268 -154267286 + AluY SINE Alu 1 305 -6 203 387 95 15 chr6 35012506 35012780 -154266774 + L2 LINE L2 2973 3268 -4 184 336 92 30 chr6 35012984 35013246 -154266308 - L2 LINE L2 -349 2965 2688 390 242 124 54 chr6 35013520 35013818 -154265736 - L1ME4a LINE L1 -2 6119 5801 924 139 0 0 chr6 35014138 35014267 -154265287 + AluSg/x SINE Alu 137 265 -47 225 0 0 0 chr6 35014287 35014312 -154265242 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2331 94 0 16 chr6 35014312 35014619 -154264935 + AluSc SINE Alu 1 302 -7 1162 255 47 15 chr6 35014706 35015114 -154264440 + L1MDb LINE L1 754 1174 -5235 * 4297 26 37 0 chr6 35015110 35015618 -154263936 - L1PA4 LINE L1 -1130 5016 4490 7757 29 2 0 chr6 35015618 35016764 -154262790 + L1PA4 LINE L1 5007 6155 0 604 63 8 72 chr6 35016819 35016933 -154262621 + L1PA11 LINE L1 5007 6174 0 454 181 55 110 chr6 35016999 35017126 -154262428 + L1MDb LINE L1 1118 1341 -5065 * 32693 107 20 49 chr6 35017125 35018835 -154260719 + L1PA7 LINE L1 3 1762 -4392 2464 75 0 0 chr6 35018835 35019129 -154260425 + AluY SINE Alu 5 298 -13 32693 107 20 49 chr6 35019129 35023775 -154255779 + L1PA7 LINE L1 1762 6154 0 276 280 0 9 chr6 35023759 35023866 -154255688 + L1MDb LINE L1 1309 1414 -4995 * 1334 155 0 15 chr6 35023895 35024101 -154255453 - AluJb SINE Alu -28 284 82 1065 234 86 9 chr6 35024111 35024436 -154255118 + L1MDb LINE L1 1432 1781 -4625 1358 258 71 0 chr6 35024450 35024884 -154254670 + L1M4 LINE L1 4282 4746 -1400 2342 190 0 14 chr6 35024896 35025311 -154254243 + L1PA12 LINE L1 7 415 -7166 302 351 6 23 chr6 35025659 35025833 -154253721 + C-rich Low_complexity Low_complexity 5 175 0 210 347 7 28 chr6 35025996 35026140 -154253414 + (CACCC)n Simple_repeat Simple_repeat 1 141 0 * 335 259 7 58 chr6 35026043 35026182 -154253372 + C-rich Low_complexity Low_complexity 6 137 0 1602 175 60 30 chr6 35026610 35026941 -154252613 - MER58B DNA MER1_type 0 341 1 2079 117 3 3 chr6 35026977 35027292 -154252262 + AluSq SINE Alu 1 315 0 618 280 65 39 chr6 35027292 35027628 -154251926 + L1M4 LINE L1 3967 4311 -1835 517 203 123 44 chr6 35027627 35027943 -154251611 - HAL1 LINE L1 -1304 1203 863 * 206 333 8 8 chr6 35027967 35028084 -154251470 + L2 LINE L2 833 949 -2365 344 261 144 18 chr6 35028509 35028620 -154250934 - MER5A DNA MER1_type -1 188 64 575 279 97 6 chr6 35028933 35029098 -154250456 - MER5A DNA MER1_type -1 188 9 2281 114 0 7 chr6 35029274 35029582 -154249972 - AluSg SINE Alu -4 306 1 996 148 30 145 chr6 35030196 35030328 -154249226 - MER57-int LTR ERV1 -2941 3005 2859 2175 121 0 0 chr6 35030328 35030610 -154248944 + AluSc SINE Alu 1 282 -27 609 83 0 0 chr6 35030610 35030694 -154248860 + (TA)n Simple_repeat Simple_repeat 2 85 0 996 148 30 145 chr6 35030694 35031005 -154248549 - MER57-int LTR ERV1 -3085 2861 1027 1923 138 45 3 chr6 35031057 35031347 -154248207 + AluJo SINE Alu 1 302 -10 1958 164 44 109 chr6 35031399 35031856 -154247698 - MER57-int LTR ERV1 -4122 3415 2989 4317 138 50 42 chr6 35031871 35032685 -154246869 - MER57-int LTR ERV1 -2615 2265 767 2513 172 25 37 chr6 35032743 35033672 -154245882 - MER57-int LTR ERV1 -4464 1842 3 2396 83 3 0 chr6 35033730 35034019 -154245535 + AluSx SINE Alu 1 290 -22 504 262 0 27 chr6 35034056 35034205 -154245349 - LTR41 LTR ERVL -619 154 10 2319 111 0 0 chr6 35034260 35034557 -154244997 - AluSx SINE Alu -15 297 1 854 71 0 100 chr6 35035296 35035416 -154244138 + AluSg/x SINE Alu 185 291 -19 1684 123 110 48 chr6 35035416 35035552 -154244002 + AluSx SINE Alu 1 127 -185 2214 71 3 52 chr6 35035552 35035860 -154243694 + AluY SINE Alu 1 293 -18 1684 123 110 48 chr6 35035860 35036015 -154243539 + AluSx SINE Alu 127 310 -2 854 71 0 100 chr6 35036015 35036034 -154243520 + AluSg/x SINE Alu 291 310 0 297 381 0 0 chr6 35037691 35037859 -154241695 + (CCA)n Simple_repeat Simple_repeat 1 168 0 216 303 230 6 chr6 35040271 35040449 -154239105 - MIR SINE MIR -1 261 44 21 36 0 0 chr6 35040680 35040708 -154238846 + AT_rich Low_complexity Low_complexity 1 28 0 422 254 110 21 chr6 35041629 35041848 -154237706 - MER102b DNA MER1_type -4 337 92 3506 106 23 0 chr6 35042473 35042993 -154236561 + L1PA13 LINE L1 5627 6158 -5 1362 283 122 34 chr6 35043794 35044615 -154234939 - L2 LINE L2 -4 3309 2325 1981 138 15 50 chr6 35044747 35045144 -154234410 - L1MB8 LINE L1 -5 6173 5791 5687 111 11 3 chr6 35045222 35046629 -154232925 - L1PA13 LINE L1 -2 6161 4739 867 89 73 0 chr6 35046746 35046869 -154232685 - AluY SINE Alu -179 132 1 1961 129 4 0 chr6 35048105 35048405 -154231149 - AluSx SINE Alu 0 301 1 435 235 15 37 chr6 35048666 35048802 -154230752 - MER102b DNA MER1_type -4 337 205 1369 282 120 34 chr6 35050251 35051074 -154228480 - L2 LINE L2 -4 3309 2325 732 316 117 7 chr6 35052325 35052762 -154226792 - L2 LINE L2 -1009 2305 1821 231 36 0 0 chr6 35052901 35052929 -154226625 + (TA)n Simple_repeat Simple_repeat 2 29 0 413 268 75 114 chr6 35053011 35053558 -154225996 + L1MEd LINE L1 872 1528 -962 2850 117 29 22 chr6 35053569 35054058 -154225496 + L1MA3 LINE L1 5814 6305 0 351 335 27 8 chr6 35054061 35054260 -154225294 + L1M4c LINE L1 1543 1898 -845 338 145 0 14 chr6 35054371 35054412 -154225142 + (GGAGAA)n Simple_repeat Simple_repeat 5 46 -26 1797 172 26 0 chr6 35054412 35054714 -154224840 + AluJb SINE Alu 1 310 -2 338 145 0 14 chr6 35054714 35054741 -154224813 + (GGAGAA)n Simple_repeat Simple_repeat 46 72 0 303 348 27 39 chr6 35054911 35055043 -154224511 + L1M4c LINE L1 2232 2361 -4202 2654 7 0 0 chr6 35055043 35055329 -154224225 - AluYa5 SINE Alu -9 302 17 303 348 27 39 chr6 35055329 35055452 -154224102 + L1M4c LINE L1 2361 2484 -4079 21 82 0 0 chr6 35055452 35055501 -154224053 + AT_rich Low_complexity Low_complexity 1 49 0 2183 131 3 0 chr6 35055587 35055884 -154223670 + AluSq SINE Alu 1 298 -15 406 296 26 15 chr6 35056193 35056457 -154223097 + L1M4c LINE L1 2975 3241 -3141 213 121 0 0 chr6 35056906 35056939 -154222615 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 874 219 46 63 chr6 35057096 35057447 -154222107 - MER87 LTR ERV1 -1 540 196 1600 96 0 0 chr6 35057866 35058064 -154221490 + AluSx SINE Alu 1 198 -114 4171 75 49 8 chr6 35058064 35058674 -154220880 - PABL_A LTR ERV1 -25 635 1 361 127 25 0 chr6 35059449 35059528 -154220026 + CT-rich Low_complexity Low_complexity 2 82 0 983 196 53 46 chr6 35060012 35060446 -154219108 + L1MDa LINE L1 2552 2985 -3555 921 289 72 38 chr6 35060446 35060822 -154218732 - L2 LINE L2 -303 3010 2623 1999 155 3 7 chr6 35061187 35061491 -154218063 - AluJo SINE Alu -9 303 1 1051 192 104 0 chr6 35061491 35061666 -154217888 - MER58B DNA MER1_type -2118 302 92 387 0 0 0 chr6 35061666 35061709 -154217845 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1051 192 104 0 chr6 35061709 35061776 -154217778 - MER58B DNA MER1_type -2328 92 33 1675 150 35 24 chr6 35061943 35062230 -154217324 - AluJo SINE Alu -17 295 6 1899 133 17 23 chr6 35062337 35062637 -154216917 + AluJb SINE Alu 1 298 -14 886 135 0 0 chr6 35063903 35064029 -154215525 - FLAM_C SINE Alu -7 126 1 651 283 74 13 chr6 35064339 35064569 -154214985 - MIR SINE MIR -16 246 3 2262 105 7 0 chr6 35065074 35065368 -154214186 - AluSq SINE Alu -17 296 1 896 101 7 43 chr6 35065750 35065888 -154213666 - FLAM_C SINE Alu 0 133 1 24 32 0 0 chr6 35066271 35066302 -154213252 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr6 35067065 35067085 -154212469 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2573 66 3 0 chr6 35067522 35067827 -154211727 + AluSp SINE Alu 1 306 -7 801 196 136 18 chr6 35067936 35068156 -154211398 - MIR SINE MIR 0 262 17 2201 118 0 34 chr6 35068292 35068614 -154210940 - AluSx SINE Alu -1 311 1 1031 241 45 20 chr6 35068942 35069187 -154210367 + MIR SINE MIR 12 262 0 228 307 0 39 chr6 35070480 35070607 -154208947 + A-rich Low_complexity Low_complexity 3 124 0 217 294 35 12 chr6 35071035 35071120 -154208434 - L2 LINE L2 -30 3283 3197 263 319 228 11 chr6 35071862 35072147 -154207407 - L2 LINE L2 -1093 2221 1875 25 51 0 0 chr6 35072258 35072297 -154207257 + AT_rich Low_complexity Low_complexity 1 39 0 432 283 332 27 chr6 35072307 35072714 -154206840 + L3 LINE CR1 1045 1575 -2 203 152 0 0 chr6 35073043 35073076 -154206478 + GA-rich Low_complexity Low_complexity 2 34 0 606 95 12 0 chr6 35073329 35073413 -154206141 - AluSg/x SINE Alu -40 270 186 297 260 48 10 chr6 35074795 35074899 -154204655 + L1ME LINE L1 5634 5741 -380 26 30 0 0 chr6 35074953 35074986 -154204568 + AT_rich Low_complexity Low_complexity 1 33 0 2586 50 0 0 chr6 35076163 35076463 -154203091 - AluY SINE Alu -10 301 2 2234 89 0 23 chr6 35076464 35076766 -154202788 - AluSc SINE Alu -14 295 1 25 31 0 0 chr6 35077596 35077628 -154201926 + AT_rich Low_complexity Low_complexity 1 32 0 275 378 77 14 chr6 35077628 35077837 -154201717 - MIR SINE MIR -28 234 13 273 242 154 0 chr6 35077839 35077930 -154201624 + MIR3 SINE MIR 83 187 -21 1767 106 51 4 chr6 35078197 35078471 -154201083 + L1PA11 LINE L1 5888 6174 0 1155 232 21 1 chr6 35079839 35080153 -154199401 - MER57A LTR ERV1 0 403 106 2129 115 20 0 chr6 35080398 35080694 -154198860 - AluSx SINE Alu -10 302 1 2340 125 0 0 chr6 35084853 35085165 -154194389 - AluSx SINE Alu 0 312 1 21 0 0 0 chr6 35085219 35085240 -154194314 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr6 35085478 35085515 -154194039 + AT_rich Low_complexity Low_complexity 1 37 0 1372 160 49 65 chr6 35085852 35086220 -154193334 - L1MB5 LINE L1 0 6174 5813 1080 196 33 4 chr6 35086223 35086468 -154193086 - L1MC2 LINE L1 -5 6339 6088 21 82 0 0 chr6 35086544 35086593 -154192961 + AT_rich Low_complexity Low_complexity 1 49 0 250 262 107 33 chr6 35087102 35087224 -154192330 + L2 LINE L2 3183 3313 0 257 287 65 37 chr6 35087238 35087346 -154192208 - L2 LINE L2 -17 3296 3186 908 118 0 22 chr6 35088235 35088371 -154191183 + AluSc SINE Alu 1 133 -176 493 62 0 0 chr6 35088372 35088437 -154191117 - L1PA5 LINE L1 -288 5866 5802 1757 50 9 0 chr6 35088437 35088654 -154190900 + L1PA6 LINE L1 5927 6149 -5 1186 106 12 0 chr6 35088654 35088852 -154190702 + AluSc SINE Alu 124 323 0 309 345 68 34 chr6 35090835 35091041 -154188513 + MIR SINE MIR 12 224 -38 211 283 0 0 chr6 35091084 35091137 -154188417 + (TAG)n Simple_repeat Simple_repeat 1 53 0 6648 61 7 28 chr6 35091235 35093189 -154186365 + SVA Other Other 534 1384 -2 1684 205 80 53 chr6 35094115 35094603 -154184951 - MLT1F LTR MaLR 0 542 42 1611 158 3 68 chr6 35094740 35095050 -154184504 + AluJb SINE Alu 6 295 -17 352 259 86 17 chr6 35095565 35095681 -154183873 - L1ME2 LINE L1 0 6164 6041 1859 237 95 13 chr6 35095688 35096378 -154183176 - L1ME2 LINE L1 -176 5988 5243 861 288 43 26 chr6 35096379 35096914 -154182640 - L1ME2 LINE L1 -1635 4511 3968 201 108 0 54 chr6 35097014 35097051 -154182503 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 21 82 0 0 chr6 35097059 35097108 -154182446 + AT_rich Low_complexity Low_complexity 1 49 0 2293 224 31 19 chr6 35097192 35097875 -154181679 - L1M4 LINE L1 -933 5213 4523 45 35 3 0 chr6 35097932 35098029 -154181525 + AT_rich Low_complexity Low_complexity 1 66 0 304 185 40 6 chr6 35098095 35098268 -154181286 + (TA)n Simple_repeat Simple_repeat 2 180 0 1322 141 111 39 chr6 35098288 35098621 -154180933 - L1MA7 LINE L1 -68 6223 5867 257 0 30 0 chr6 35098705 35098738 -154180816 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 180 0 0 0 chr6 35099019 35099039 -154180515 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 301 304 59 8 chr6 35099165 35099402 -154180152 - L1M4 LINE L1 -1721 4425 4177 1022 329 50 27 chr6 35100023 35100304 -154179250 + L2 LINE L2 2530 2803 -510 1871 151 3 10 chr6 35100304 35100596 -154178958 - AluJo SINE Alu -22 290 1 1022 329 50 27 chr6 35100596 35100919 -154178635 + L2 LINE L2 2803 3151 -162 3418 155 38 49 chr6 35100919 35101755 -154177799 - LTR1 LTR ERV1 0 785 1 1522 149 20 0 chr6 35101757 35102006 -154177548 - HUERS-P2 LTR ERV1 -2 3086 2833 6288 127 12 5 chr6 35102082 35103057 -154176497 - HUERS-P2 LTR ERV1 -257 2831 1850 1334 202 80 29 chr6 35103057 35103084 -154176470 + L1M4 LINE L1 753 777 -5765 261 0 0 0 chr6 35103084 35103113 -154176441 + (CA)n Simple_repeat Simple_repeat 2 30 0 1334 202 80 29 chr6 35103113 35103598 -154175956 + L1M4 LINE L1 777 1336 -5206 896 279 63 6 chr6 35103597 35103916 -154175638 - L1M4c LINE L1 -4824 1560 1224 * 2384 128 30 10 chr6 35104415 35104813 -154174741 - L1PA15 LINE L1 -3 6162 5757 2213 106 3 10 chr6 35104912 35105213 -154174341 + AluSp SINE Alu 1 299 -14 195 42 0 0 chr6 35106479 35106503 -154173051 + (TC)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr6 35106915 35106936 -154172618 + (TA)n Simple_repeat Simple_repeat 2 22 0 240 103 51 0 chr6 35106981 35107020 -154172534 - Charlie7 DNA MER1_type -2522 90 50 2403 94 0 0 chr6 35107668 35107976 -154171578 + AluSg SINE Alu 1 308 -2 235 328 0 0 chr6 35108605 35108663 -154170891 + L2 LINE L2 3169 3226 -46 269 266 96 0 chr6 35109788 35109882 -154169672 - MIR SINE MIR -113 149 47 567 78 0 0 chr6 35110058 35110135 -154169419 + (TC)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr6 35110276 35110300 -154169254 + (CA)n Simple_repeat Simple_repeat 2 25 0 2453 58 10 10 chr6 35110566 35110875 -154168679 - AluY SINE Alu -2 309 1 2038 213 26 12 chr6 35111441 35111864 -154167690 + L1M3c LINE L1 1364 1792 -5704 655 213 15 0 chr6 35112019 35112155 -154167399 + L1M3c LINE L1 2030 2167 -5329 1791 191 7 0 chr6 35112170 35112464 -154167090 + AluJo SINE Alu 3 298 -14 2296 257 44 23 chr6 35112489 35114436 -154165118 + L1M3c LINE L1 2181 4018 -3547 1740 160 53 61 chr6 35114442 35114820 -154164734 + L1MA9 LINE L1 4862 5237 -909 2386 130 52 40 chr6 35114820 35115053 -154164501 - MSTC LTR MaLR 0 428 186 2600 39 3 0 chr6 35115053 35115359 -154164195 - AluY SINE Alu -4 307 1 2386 130 52 40 chr6 35115359 35115548 -154164006 - MSTC LTR MaLR -242 186 1 1740 160 53 61 chr6 35115548 35115644 -154163910 + L1MA9 LINE L1 5237 5332 -814 6548 55 4 0 chr6 35115671 35116485 -154163069 + L1PA5 LINE L1 5335 6151 -3 204 40 0 0 chr6 35116497 35116522 -154163032 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4497 157 79 8 chr6 35116522 35116949 -154162605 + L1MA9 LINE L1 5324 5719 -593 261 57 0 0 chr6 35116949 35116984 -154162570 + (CA)n Simple_repeat Simple_repeat 2 36 0 4497 157 79 8 chr6 35116984 35117479 -154162075 + L1MA9 LINE L1 5719 6312 0 3242 31 0 0 chr6 35117549 35118224 -154161330 + L1PA5 LINE L1 4983 5657 -498 1865 10 0 0 chr6 35118224 35118453 -154161101 + L1PA3 LINE L1 5929 6159 0 4020 42 0 8 chr6 35118456 35118951 -154160603 + L1PA5 LINE L1 5662 6152 -2 214 294 22 33 chr6 35119204 35119296 -154160258 - MIR SINE MIR -6 256 166 414 289 235 7 chr6 35119341 35119490 -154160064 - MER91A DNA MER1_type 0 196 14 648 277 194 9 chr6 35119506 35119831 -154159723 + L2 LINE L2 2315 2699 -615 402 274 32 16 chr6 35119862 35119986 -154159568 - MIR SINE MIR -105 157 32 2064 129 0 0 chr6 35120627 35120921 -154158633 - AluSx SINE Alu -9 303 10 256 315 0 11 chr6 35121887 35121979 -154157575 + A-rich Low_complexity Low_complexity 2 92 0 22 35 0 0 chr6 35122330 35122359 -154157195 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 35122457 35122482 -154157072 + AT_rich Low_complexity Low_complexity 1 25 0 258 267 38 0 chr6 35122639 35122744 -154156810 - L1ME LINE L1 -352 5881 5773 460 307 73 72 chr6 35122919 35123436 -154156118 - L1ME LINE L1 -638 5593 5065 376 315 123 16 chr6 35123549 35124226 -154155328 - L1ME LINE L1 -1221 4994 4246 629 158 20 0 chr6 35124386 35124487 -154155067 - U6 snRNA snRNA -4 103 1 424 291 111 54 chr6 35124562 35124968 -154154586 - L1ME LINE L1 -3903 2493 2065 407 263 75 0 chr6 35125270 35125403 -154154151 - HAL1 LINE L1 -829 1678 1536 677 278 63 39 chr6 35125892 35126226 -154153328 - MLT1J2 LTR MaLR -44 406 65 1667 189 6 82 chr6 35126234 35126722 -154152832 - MLT1D LTR MaLR 0 505 55 310 276 25 44 chr6 35128590 35128730 -154150824 - MIR SINE MIR -66 142 1 25 90 0 0 chr6 35128823 35128890 -154150664 + AT_rich Low_complexity Low_complexity 1 67 0 448 351 117 7 chr6 35129345 35129776 -154149778 - L2 LINE L2 -171 3142 2658 302 229 122 46 chr6 35129796 35129927 -154149627 - L2 LINE L2 -2728 586 446 1424 140 10 0 chr6 35129981 35130188 -154149366 + AluJo SINE Alu 86 294 -18 1509 104 73 0 chr6 35130232 35130492 -154149062 - L1MA8 LINE L1 -5 6286 6008 1844 154 7 0 chr6 35130516 35130796 -154148758 - AluSx SINE Alu -28 284 3 424 326 119 44 chr6 35130814 35131108 -154148446 - L2 LINE L2 -2960 354 39 521 274 158 0 chr6 35131362 35131552 -154148002 - MIR SINE MIR -4 258 39 1558 180 22 7 chr6 35131865 35132143 -154147411 + AluJo SINE Alu 1 282 -30 1365 40 0 40 chr6 35132728 35132904 -154146650 + L1PA3 LINE L1 5984 6152 -3 32 0 0 0 chr6 35132904 35132936 -154146618 + AT_rich Low_complexity Low_complexity 1 32 0 216 325 98 26 chr6 35133928 35134193 -154145361 + L2 LINE L2 1463 1746 -1568 487 269 9 0 chr6 35134375 35134483 -154145071 + MIR SINE MIR 5 113 -149 1943 129 38 0 chr6 35134559 35134846 -154144708 + AluSx SINE Alu 1 298 -14 231 281 45 22 chr6 35135436 35135525 -154144029 + Charlie8 DNA MER1_type 1 91 -2326 2135 130 7 0 chr6 35135917 35136218 -154143336 + AluSx SINE Alu 1 303 -9 371 282 70 19 chr6 35136253 35136409 -154143145 - MER117 DNA MER1_type 0 197 34 338 294 33 0 chr6 35137154 35137246 -154142308 - MIR SINE MIR -56 152 58 529 100 12 0 chr6 35137443 35137523 -154142031 - L1MA5 LINE L1 -5 6295 6215 521 205 186 31 chr6 35138666 35138827 -154140727 + MER5A DNA MER1_type 4 189 0 473 195 0 13 chr6 35139219 35139296 -154140258 + AluJ/FLAM SINE Alu 2 77 -235 255 61 0 0 chr6 35139316 35139349 -154140205 + (TG)n Simple_repeat Simple_repeat 1 33 0 32 0 0 0 chr6 35140141 35140173 -154139381 + AT_rich Low_complexity Low_complexity 1 32 0 549 89 13 0 chr6 35140491 35140570 -154138984 - L1PA16 LINE L1 -9 6157 6078 31 44 0 0 chr6 35141480 35141525 -154138029 + AT_rich Low_complexity Low_complexity 1 45 0 2284 102 0 3 chr6 35141959 35142262 -154137292 - AluY SINE Alu -9 302 1 297 253 27 73 chr6 35142343 35142493 -154137061 - MIR SINE MIR -11 251 109 2086 106 0 11 chr6 35143726 35144009 -154135545 + AluSg SINE Alu 25 304 -6 1721 175 7 11 chr6 35144101 35144420 -154135134 + AluJo SINE Alu 1 318 0 3415 89 22 0 chr6 35145117 35145567 -154133987 - LTR46 LTR ERV1 0 460 1 2090 95 25 7 chr6 35146047 35146330 -154133224 + AluSx SINE Alu 1 288 -24 342 0 0 0 chr6 35146335 35146373 -154133181 + (TG)n Simple_repeat Simple_repeat 2 39 0 334 245 65 125 chr6 35147250 35147434 -154132120 - L2 LINE L2 -3 3269 3097 650 176 9 0 chr6 35147997 35148105 -154131449 + L1PB4 LINE L1 6034 6142 -14 1432 89 0 26 chr6 35148158 35148292 -154131262 + AluSg SINE Alu 1 130 -180 2280 113 0 3 chr6 35148292 35148593 -154130961 + AluSx SINE Alu 1 300 -12 1432 89 0 26 chr6 35148593 35148649 -154130905 + AluSg SINE Alu 130 186 -124 689 137 0 30 chr6 35149528 35149659 -154129895 + L1MA8 LINE L1 6161 6287 -4 279 310 143 50 chr6 35150322 35150622 -154128932 - MLT1L LTR MaLR -10 605 278 213 153 42 0 chr6 35150939 35151011 -154128543 + (TA)n Simple_repeat Simple_repeat 1 75 0 1879 168 0 0 chr6 35151412 35151716 -154127838 - AluSg SINE Alu -6 304 1 1382 227 20 3 chr6 35151782 35152081 -154127473 + L1MB8 LINE L1 5520 5823 -343 451 197 0 0 chr6 35152086 35152162 -154127392 + U1 snRNA snRNA 3 78 -87 660 226 0 0 chr6 35152162 35152299 -154127255 + L1PB4 LINE L1 6020 6156 0 1041 267 47 30 chr6 35152315 35152678 -154126876 + L1MB8 LINE L1 5808 6176 -2 2111 93 0 7 chr6 35152709 35152988 -154126566 + AluSg1 SINE Alu 2 278 -31 207 0 0 0 chr6 35152991 35153014 -154126540 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1983 147 0 13 chr6 35153019 35153332 -154126222 + AluSg SINE Alu 1 309 -1 320 319 62 27 chr6 35153347 35153399 -154126155 - L1 LINE L1 -1762 4384 4335 2480 152 43 14 chr6 35153399 35153813 -154125741 - MSTB LTR MaLR 0 426 1 320 319 62 27 chr6 35153813 35154730 -154124824 - L1 LINE L1 -1811 4335 3339 2874 249 105 57 chr6 35154742 35155134 -154124420 + L1MD2 LINE L1 1492 1864 -4676 1878 176 0 3 chr6 35155134 35155447 -154124107 - AluJb SINE Alu 0 312 1 2874 249 105 57 chr6 35155447 35156730 -154122824 + L1MD2 LINE L1 1864 3085 -3455 1918 119 0 17 chr6 35156730 35157025 -154122529 + AluSg SINE Alu 1 290 -20 1933 84 4 4 chr6 35157026 35157287 -154122267 + AluSc SINE Alu 1 261 -48 1548 50 0 0 chr6 35157290 35157469 -154122085 + AluY SINE Alu 7 185 -126 618 83 0 62 chr6 35157469 35157565 -154121989 + AluY SINE Alu 218 307 -4 2874 249 105 57 chr6 35157565 35157784 -154121770 + L1MD2 LINE L1 3086 3293 -3247 2201 95 20 0 chr6 35157784 35158079 -154121475 + AluSp SINE Alu 1 301 -12 2874 249 105 57 chr6 35158079 35158936 -154120618 + L1MD2 LINE L1 3293 4461 -2079 1637 227 62 83 chr6 35158944 35160008 -154119546 + L1MD2 LINE L1 4662 5695 -941 2376 80 0 13 chr6 35160008 35160307 -154119247 + AluY SINE Alu 1 295 -16 1637 227 62 83 chr6 35160307 35160562 -154118992 + L1MD2 LINE L1 5695 5954 -682 5692 89 100 0 chr6 35160570 35161321 -154118233 - LTR12 LTR ERV1 0 826 1 8175 93 4 13 chr6 35161321 35162450 -154117104 - HERV9 LTR ERV1 0 8399 7281 * 10535 105 9 10 chr6 35162439 35163911 -154115643 - HERV9 LTR ERV1 -5200 3199 1730 10101 125 13 13 chr6 35163913 35165435 -154114119 - HERV9 LTR ERV1 -6877 1522 1 2164 82 241 173 chr6 35165454 35166002 -154113552 - LTR12 LTR ERV1 -129 585 1 2332 219 48 20 chr6 35166004 35166565 -154112989 + L1MD2 LINE L1 5961 6537 -216 451 288 38 6 chr6 35166563 35166723 -154112831 + L1MD3 LINE L1 7831 7995 0 * 973 156 21 0 chr6 35166736 35166915 -154112639 + L1MC2 LINE L1 5465 5657 -687 1182 188 43 27 chr6 35166943 35167199 -154112355 + L1MC2 LINE L1 6060 6319 -25 6874 116 4 9 chr6 35167270 35168244 -154111310 - LTR5 LTR ERVK 0 969 1 24 0 0 0 chr6 35168266 35168290 -154111264 + AT_rich Low_complexity Low_complexity 1 24 0 1545 158 75 19 chr6 35168476 35168741 -154110813 - MER51A LTR ERV1 -352 282 3 2637 183 25 0 chr6 35168743 35169225 -154110329 + L1MC2 LINE L1 5567 6060 -284 253 189 0 0 chr6 35169229 35169266 -154110288 - LOR1a LTR ERV1 0 497 461 2361 189 15 22 chr6 35169266 35169720 -154109834 - LOR1b LTR ERV1 -10 451 1 1042 195 27 46 chr6 35169723 35169929 -154109625 + L1MC2 LINE L1 6065 6266 -78 2884 7 0 0 chr6 35169929 35170237 -154109317 - AluYa5 SINE Alu -3 308 1 1042 195 27 46 chr6 35170237 35170292 -154109262 + L1MC2 LINE L1 6266 6321 -23 3162 178 117 89 chr6 35170384 35171331 -154108223 - MER52A LTR ERV1 -516 1239 270 796 140 70 14 chr6 35172072 35172265 -154107289 - AluJb SINE Alu 0 361 161 353 337 47 32 chr6 35172889 35173079 -154106475 + MIR SINE MIR 51 243 -19 26 82 0 0 chr6 35173224 35173285 -154106269 + AT_rich Low_complexity Low_complexity 1 61 0 1829 158 0 7 chr6 35173515 35173819 -154105735 + AluY SINE Alu 1 302 -9 230 302 174 35 chr6 35174206 35174378 -154105176 - MIR3 SINE MIR -7 201 6 290 194 14 0 chr6 35175735 35175807 -154103747 - MER116 DNA Mariner -6 74 2 1591 201 7 0 chr6 35176087 35176376 -154103178 - AluJb SINE Alu -19 293 3 606 307 112 67 chr6 35176618 35177138 -154102416 - L2 LINE L2 -18 3295 2800 2171 123 0 16 chr6 35177138 35177454 -154102100 - AluSq SINE Alu 0 313 3 606 307 112 67 chr6 35177454 35177539 -154102015 - L2 LINE L2 -513 2800 2720 2049 115 0 4 chr6 35177539 35177817 -154101737 - AluSc SINE Alu -32 277 1 606 307 112 67 chr6 35177817 35178629 -154100925 - L2 LINE L2 -593 2720 1813 346 208 15 5 chr6 35179846 35179968 -154099586 - MER53 DNA DNA 0 189 1 905 192 45 17 chr6 35180735 35180912 -154098642 + MER20 DNA MER1_type 31 212 -7 228 323 106 42 chr6 35180919 35181343 -154098211 - Tigger4(Zombi) DNA MER2_type -1877 854 404 279 328 68 101 chr6 35181606 35182184 -154097370 + L2 LINE L2 2715 3269 -3 288 106 0 0 chr6 35182901 35182909 -154096645 + (GA)n Simple_repeat Simple_repeat 1 8 -39 261 0 0 0 chr6 35182909 35182938 -154096616 + (TG)n Simple_repeat Simple_repeat 1 29 0 288 106 0 0 chr6 35182938 35182976 -154096578 + (GA)n Simple_repeat Simple_repeat 7 47 0 23 0 0 0 chr6 35183681 35183704 -154095850 + AT_rich Low_complexity Low_complexity 1 23 0 454 292 81 11 chr6 35184670 35184855 -154094699 - MIR SINE MIR -57 205 8 329 250 0 25 chr6 35185773 35185853 -154093701 + MIR SINE MIR 50 127 -135 1638 106 7 66 chr6 35186747 35187021 -154092533 + LTR12 LTR ERV1 1 258 -456 254 316 53 0 chr6 35187021 35187135 -154092419 + LTR30 LTR ERV1 524 643 -79 734 109 0 0 chr6 35187136 35187237 -154092317 + LTR12 LTR ERV1 481 581 -133 210 91 0 0 chr6 35187857 35187890 -154091664 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 645 136 16 24 chr6 35187936 35188061 -154091493 + L1MA8 LINE L1 6164 6287 -4 328 348 96 14 chr6 35188774 35189067 -154090487 - MLT1L LTR MaLR -76 539 223 255 125 0 0 chr6 35189343 35189391 -154090163 + LTR66 LTR ERVL 394 441 -169 259 287 23 0 chr6 35189401 35189488 -154090066 - L1MC4 LINE L1 -1339 6703 6615 228 236 36 0 chr6 35189440 35189495 -154090059 + L1MD3 LINE L1 6612 6668 -1327 * 21 36 0 0 chr6 35189737 35189765 -154089789 + AT_rich Low_complexity Low_complexity 1 28 0 1203 257 24 3 chr6 35189970 35190262 -154089292 + L1MB8 LINE L1 5520 5817 -349 379 224 0 0 chr6 35190273 35190349 -154089205 + U1 snRNA snRNA 3 78 -87 650 241 0 0 chr6 35190349 35190486 -154089068 + L1PB4 LINE L1 6020 6156 0 933 248 51 39 chr6 35190487 35190818 -154088736 + L1MB8 LINE L1 5812 6146 -32 257 305 62 12 chr6 35191107 35191319 -154088235 + L1MC/D LINE L1 5308 5529 -712 1081 257 59 32 chr6 35192370 35192927 -154086627 + L1M4 LINE L1 2587 3158 -2988 1199 174 31 9 chr6 35192972 35193196 -154086358 - MSTB LTR MaLR 0 426 198 1017 289 70 30 chr6 35193206 35193735 -154085819 - L1M4 LINE L1 -2208 3938 3389 2846 216 129 38 chr6 35193827 35194231 -154085323 + L1MDa LINE L1 1492 1858 -4682 1832 161 0 37 chr6 35194231 35194554 -154085000 - AluJb SINE Alu -1 311 1 2846 216 129 38 chr6 35194554 35195210 -154084344 + L1MDa LINE L1 1858 2649 -3891 694 225 236 30 chr6 35195240 35195511 -154084043 - MER52A LTR ERV1 -1208 547 221 318 310 76 47 chr6 35196357 35196528 -154083026 + MIR SINE MIR 68 243 -19 241 344 21 11 chr6 35197413 35197506 -154082048 - MIR SINE MIR -94 114 21 313 208 13 0 chr6 35198877 35198954 -154080600 - MER116 DNA Mariner -1 79 2 1559 191 28 0 chr6 35199234 35199522 -154080032 - AluJb SINE Alu -16 296 1 21 57 0 0 chr6 35199537 35199572 -154079982 + AT_rich Low_complexity Low_complexity 1 35 0 2238 118 3 0 chr6 35199582 35199887 -154079667 + AluSc SINE Alu 1 306 -3 826 321 150 36 chr6 35200087 35201419 -154078135 - L2 LINE L2 -17 3296 1813 239 313 12 12 chr6 35201636 35201716 -154077838 - L2 LINE L2 -5 3308 3229 345 167 25 6 chr6 35202634 35202746 -154076808 - MER53 DNA DNA -1 188 9 935 196 39 17 chr6 35203505 35203684 -154075870 + MER20 DNA MER1_type 30 212 -7 2120 94 3 11 chr6 35203731 35204046 -154075508 - AluY SINE Alu 0 313 1 2322 178 33 7 chr6 35204170 35204591 -154074963 + LTR3 LTR ERVK 1 432 0 23100 115 28 7 chr6 35204591 35206138 -154073416 + HERVK3 LTR ERVK 1 1514 -5729 2310 85 7 7 chr6 35206138 35206433 -154073121 - AluY SINE Alu -16 295 1 23100 115 28 7 chr6 35206433 35208264 -154071290 + HERVK3 LTR ERVK 1514 3451 -3792 2276 94 0 3 chr6 35208265 35208572 -154070982 + AluY SINE Alu 1 306 -5 21 0 0 0 chr6 35208662 35208683 -154070871 + AT_rich Low_complexity Low_complexity 1 21 0 1932 131 10 0 chr6 35208956 35209246 -154070308 + AluY SINE Alu 1 293 -18 197 331 175 19 chr6 35209631 35209791 -154069763 - MIR3 SINE MIR -4 204 20 308 208 13 0 chr6 35211166 35211243 -154068311 - MER116 DNA Mariner -1 79 2 1492 215 7 0 chr6 35211514 35211807 -154067747 - AluJb SINE Alu -15 297 3 22 0 0 0 chr6 35211825 35211847 -154067707 + AT_rich Low_complexity Low_complexity 1 22 0 598 316 63 71 chr6 35212033 35212584 -154066970 - L2 LINE L2 -1 3312 2766 2071 132 3 7 chr6 35212595 35212905 -154066649 - AluSq SINE Alu -4 309 1 20855 36 8 0 chr6 35212997 35216153 -154063401 + L1PA4 LINE L1 2993 6155 0 720 108 0 0 chr6 35216160 35216253 -154063301 - AluSg SINE Alu -9 303 211 1133 86 0 0 chr6 35216253 35216392 -154063162 - AluSg SINE Alu -170 140 2 964 307 124 41 chr6 35216619 35217218 -154062336 - L2 LINE L2 0 3313 2765 9669 29 11 0 chr6 35217218 35218277 -154061277 + MER11C LTR ERVK 1 1071 0 964 307 124 41 chr6 35218277 35219086 -154060468 - L2 LINE L2 -548 2765 1776 248 378 9 9 chr6 35219263 35219374 -154060180 - L2 LINE L2 0 3313 3203 215 279 73 15 chr6 35219480 35219548 -154060006 - MIR SINE MIR -79 129 58 190 348 128 12 chr6 35219845 35220009 -154059545 - MIR SINE MIR -69 193 11 389 133 8 6 chr6 35220249 35220370 -154059184 - MER53 DNA DNA -1 188 2 2207 159 27 30 chr6 35220648 35221013 -154058541 - THE1B LTR MaLR 0 364 1 711 216 148 6 chr6 35221462 35221624 -154057930 + MER20 DNA MER1_type 29 213 -6 285 285 107 67 chr6 35221638 35222013 -154057541 - Tigger4(Zombi) DNA MER2_type -1885 846 457 2971 90 11 0 chr6 35222016 35222394 -154057160 + L1PA10 LINE L1 5777 6158 -10 214 284 27 0 chr6 35222505 35222579 -154056975 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 233 343 64 101 chr6 35222764 35223313 -154056241 + L2 LINE L2 2739 3267 -5 10860 174 5 21 chr6 35224464 35224803 -154054751 - L1PA15 LINE L1 -1 6164 5821 4938 74 115 124 chr6 35224803 35225636 -154053918 + LTR12 LTR ERV1 1 826 0 10860 174 5 21 chr6 35225636 35226241 -154053313 - L1PA15 LINE L1 -344 5821 5208 2657 147 58 14 chr6 35226241 35226670 -154052884 - MER83 LTR ERV1 0 448 1 10860 174 5 21 chr6 35226670 35227806 -154051748 - L1PA15 LINE L1 -957 5208 4055 1932 123 3 48 chr6 35227806 35228115 -154051439 + AluSc SINE Alu 1 295 -14 10860 174 5 21 chr6 35228115 35228266 -154051288 - L1PA15 LINE L1 -2110 4055 3903 2154 104 4 0 chr6 35228266 35228545 -154051009 - AluSc SINE Alu -15 294 15 10860 174 5 21 chr6 35228545 35229115 -154050439 - L1PA15 LINE L1 -2262 3903 3389 2586 114 31 14 chr6 35229130 35229488 -154050066 - THE1B LTR MaLR 0 364 1 11379 102 8 10 chr6 35229488 35230466 -154049088 - THE1B-int LTR MaLR 0 1580 606 2361 86 14 0 chr6 35230466 35230758 -154048796 + AluY SINE Alu 1 296 -15 11379 102 8 10 chr6 35230758 35231350 -154048204 - THE1B-int LTR MaLR -974 606 14 2441 136 37 14 chr6 35231351 35231705 -154047849 - THE1B LTR MaLR -2 362 1 10806 184 7 14 chr6 35231705 35233800 -154045754 + L1P LINE L1 2455 4535 -1611 2277 112 0 6 chr6 35233800 35234112 -154045442 + AluSx SINE Alu 3 312 0 10806 184 7 14 chr6 35234112 35234153 -154045401 + L1P LINE L1 4535 4575 -1571 811 137 43 26 chr6 35234170 35234479 -154045075 + CT-rich Low_complexity Low_complexity 1 314 0 * 882 138 6 22 chr6 35234456 35234637 -154044917 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 1122 170 121 106 chr6 35234654 35234833 -154044721 - AluJo SINE Alu -15 287 101 2375 96 0 0 chr6 35234833 35235126 -154044428 + AluSc SINE Alu 1 293 -16 1122 170 121 106 chr6 35235126 35235228 -154044326 - AluJo SINE Alu -201 101 2 2305 201 43 111 chr6 35235230 35235930 -154043624 + L1MD2 LINE L1 5577 6228 -14 4669 170 43 14 chr6 35235932 35236784 -154042770 + L1MC2 LINE L1 5457 6333 -11 2602 57 0 10 chr6 35236795 35237109 -154042445 - AluY SINE Alu 0 311 1 2434 82 3 0 chr6 35237313 35237617 -154041937 - AluSc SINE Alu -4 305 1 278 321 98 5 chr6 35237761 35237945 -154041609 - MIR SINE MIR -26 236 36 181 301 88 37 chr6 35241768 35241904 -154037650 + MIR SINE MIR 54 196 -66 2363 85 0 3 chr6 35242344 35242651 -154036903 - AluSc SINE Alu -3 306 1 216 0 0 0 chr6 35243414 35243438 -154036116 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 2487 81 3 0 chr6 35244641 35244950 -154034604 - AluSg SINE Alu 0 310 1 2261 84 0 44 chr6 35245265 35245585 -154033969 - AluY SINE Alu -5 306 1 342 123 0 0 chr6 35248088 35248145 -154031409 + (TG)n Simple_repeat Simple_repeat 2 58 0 3152 53 55 2 chr6 35249227 35249624 -154029930 - L1PA8 LINE L1 -5 6167 5750 267 211 58 0 chr6 35250846 35250898 -154028656 + Tigger5 DNA MER2_type 1 55 -2268 * 568 151 38 9 chr6 35250890 35250996 -154028558 + Tigger5 DNA MER2_type 2215 2323 0 223 288 91 35 chr6 35251241 35251355 -154028199 - MIR SINE MIR -65 143 44 35 41 0 0 chr6 35251736 35251785 -154027769 + AT_rich Low_complexity Low_complexity 1 49 0 2858 265 72 6 chr6 35252788 35253612 -154025942 + L1MDa LINE L1 3 880 -5660 488 134 0 0 chr6 35253633 35253700 -154025854 + MLT1A2 LTR MaLR 242 308 -66 4418 180 25 7 chr6 35253700 35253918 -154025636 + MER6 DNA MER2_type 1 214 -651 330 26 0 0 chr6 35253918 35253957 -154025597 + (TG)n Simple_repeat Simple_repeat 2 40 0 4418 180 25 7 chr6 35253957 35254506 -154025048 + MER6 DNA MER2_type 214 782 -83 741 168 198 51 chr6 35254538 35254735 -154024819 + MER1B DNA MER1_type 114 339 0 646 141 0 0 chr6 35254735 35254827 -154024727 + MER6 DNA MER2_type 770 861 -4 870 218 40 110 chr6 35254907 35255261 -154024293 + MLT2D LTR ERVL 86 414 0 1258 172 43 27 chr6 35255262 35255703 -154023851 + L1MD2 LINE L1 5855 6357 -2 881 217 148 0 chr6 35255833 35256022 -154023532 + Tigger5 DNA MER2_type 10 226 -2097 489 190 0 0 chr6 35256018 35256097 -154023457 + Tigger5 DNA MER2_type 2245 2323 0 * 265 261 112 30 chr6 35256190 35256324 -154023230 - LTR33A LTR ERVL -29 494 350 3092 151 53 22 chr6 35256786 35257272 -154022282 - MER89 LTR ERV1 0 559 53 2367 77 3 3 chr6 35257272 35257569 -154021985 - AluSc SINE Alu -12 297 1 3092 151 53 22 chr6 35257569 35257624 -154021930 - MER89 LTR ERV1 -506 53 1 11998 123 40 14 chr6 35258607 35260347 -154019207 - Tigger3(Golem) DNA MER2_type -1 3028 1335 459 0 0 0 chr6 35260347 35260398 -154019156 + (TA)n Simple_repeat Simple_repeat 1 51 0 2375 91 10 0 chr6 35260398 35260695 -154018859 - AluY SINE Alu -11 300 1 11998 123 40 14 chr6 35260695 35260865 -154018689 - Tigger3(Golem) DNA MER2_type -1693 1336 1067 2938 56 23 42 chr6 35260867 35261299 -154018255 + L1P LINE L1 2941 3364 -2782 * 4215 98 7 0 chr6 35261295 35261878 -154017676 + L1P LINE L1 2343 2929 -3217 402 229 57 19 chr6 35261878 35261983 -154017571 + LTR19C LTR ERV1 671 779 0 1563 159 12 0 chr6 35261983 35262234 -154017320 + L1MB1 LINE L1 5914 6167 -1 289 286 14 0 chr6 35262259 35262329 -154017225 - L1ME LINE L1 -5990 80 10 24 53 0 0 chr6 35263032 35263070 -154016484 + AT_rich Low_complexity Low_complexity 1 38 0 3012 119 47 7 chr6 35263895 35264342 -154015212 + MER4C LTR ERV1 1 465 0 867 118 183 7 chr6 35264431 35264584 -154014970 + MER4C LTR ERV1 284 463 -2 2514 48 0 0 chr6 35264839 35265131 -154014423 + AluY SINE Alu 1 292 -19 299 322 142 22 chr6 35265210 35265664 -154013890 - L1ME LINE L1 -398 5764 5255 845 306 116 18 chr6 35265716 35266287 -154013267 + L2 LINE L2 1632 2258 -1056 889 252 156 15 chr6 35266297 35266765 -154012789 - L1ME LINE L1 -1393 4753 4220 24 32 0 0 chr6 35266879 35266910 -154012644 + AT_rich Low_complexity Low_complexity 1 31 0 3340 90 5 0 chr6 35267107 35267553 -154012001 + MER41B LTR ERV1 1 448 -187 217 183 14 14 chr6 35267798 35267869 -154011685 + CT-rich Low_complexity Low_complexity 1 71 0 2207 113 0 0 chr6 35268665 35268980 -154010574 - AluSx SINE Alu 0 315 1 416 200 32 8 chr6 35269162 35269287 -154010267 + CT-rich Low_complexity Low_complexity 3 130 0 213 316 46 69 chr6 35269841 35270015 -154009539 - MIR SINE MIR -62 200 31 286 309 187 8 chr6 35271630 35271753 -154007801 + MIR3 SINE MIR 3 147 -61 203 258 124 10 chr6 35272702 35272799 -154006755 - MIR SINE MIR -18 190 82 3644 2 0 0 chr6 35272912 35273309 -154006245 - L1HS LINE L1 -2 6153 5757 2907 29 0 0 chr6 35273306 35273656 -154005898 + L1P LINE L1 4958 5307 -839 * 902 200 62 26 chr6 35274255 35274450 -154005104 - MER20 DNA MER1_type -13 206 5 2035 147 84 3 chr6 35275794 35276140 -154003414 - LTR44 LTR ERV1 -8 511 138 2006 139 37 6 chr6 35276133 35276457 -154003097 - LTR64 LTR ERVK -224 334 1 * 443 253 43 54 chr6 35276877 35277056 -154002498 + MIR SINE MIR 55 229 -33 21 0 0 0 chr6 35277223 35277244 -154002310 + AT_rich Low_complexity Low_complexity 1 21 0 207 88 0 0 chr6 35277935 35277969 -154001585 + (A)n Simple_repeat Simple_repeat 1 34 0 357 319 103 26 chr6 35279807 35280080 -153999474 - MLT1L LTR MaLR -76 539 246 231 36 0 0 chr6 35280362 35280390 -153999164 + (CA)n Simple_repeat Simple_repeat 2 29 0 210 213 0 21 chr6 35280390 35280431 -153999123 + (TA)n Simple_repeat Simple_repeat 1 40 0 1246 259 17 3 chr6 35280876 35281173 -153998381 + L1MB8 LINE L1 5523 5823 -343 420 197 0 0 chr6 35281178 35281249 -153998305 + U1 snRNA snRNA 3 73 -92 599 234 7 7 chr6 35281251 35281388 -153998166 + L1PB4 LINE L1 6020 6156 0 962 288 45 14 chr6 35281395 35281753 -153997801 + L1MB8 LINE L1 5808 6176 -2 250 309 48 0 chr6 35281971 35282097 -153997457 + L1P5 LINE L1 5308 5439 -712 1121 263 42 39 chr6 35283253 35283796 -153995758 + L1M4 LINE L1 2581 3125 -3021 1091 313 61 18 chr6 35283821 35283868 -153995686 - L1M4 LINE L1 -1767 4379 4335 2458 167 33 17 chr6 35283868 35284287 -153995267 - MSTB LTR MaLR 0 426 1 1091 313 61 18 chr6 35284287 35285204 -153994350 - L1M4 LINE L1 -1811 4335 3336 2979 206 125 34 chr6 35285216 35285619 -153993935 + L1MDa LINE L1 1492 1857 -4683 1832 182 0 3 chr6 35285619 35285932 -153993622 - AluJb SINE Alu 0 312 1 2979 206 125 34 chr6 35285932 35286589 -153992965 + L1MDa LINE L1 1857 2649 -3891 669 194 41 70 chr6 35286619 35286892 -153992662 - MER52A LTR ERV1 -681 597 221 221 197 16 16 chr6 35287614 35287675 -153991879 + CT-rich Low_complexity Low_complexity 4 64 0 279 345 64 35 chr6 35287735 35287906 -153991648 + MIR SINE MIR 68 243 -19 264 310 161 23 chr6 35288727 35288901 -153990653 - MIR3 SINE MIR -4 204 7 281 179 15 15 chr6 35290242 35290309 -153989245 - MER116 DNA Mariner -8 72 6 1619 184 28 0 chr6 35290593 35290881 -153988673 - AluJb SINE Alu -16 296 1 2187 109 3 3 chr6 35290945 35291247 -153988307 + AluSc SINE Alu 1 302 -7 934 307 152 44 chr6 35291425 35292781 -153986773 - L2 LINE L2 -1 3312 1813 268 266 26 35 chr6 35293310 35293423 -153986131 + (TCTCTG)n Simple_repeat Simple_repeat 3 114 0 180 97 0 0 chr6 35293580 35293611 -153985943 + (TG)n Simple_repeat Simple_repeat 2 32 0 234 139 0 0 chr6 35293669 35293705 -153985849 - MLT1K LTR MaLR -411 177 142 25 31 0 0 chr6 35295402 35295434 -153984120 + AT_rich Low_complexity Low_complexity 1 32 0 3307 145 61 30 chr6 35295502 35295657 -153983897 - L1MA7 LINE L1 -2 6289 6140 1306 210 52 6 chr6 35295657 35295986 -153983568 - MER2 DNA MER2_type 0 344 1 3307 145 61 30 chr6 35295986 35296067 -153983487 - L1MA7 LINE L1 -151 6140 6063 1657 174 32 0 chr6 35296067 35296349 -153983205 - AluJb SINE Alu -21 291 1 3307 145 61 30 chr6 35296349 35296786 -153982768 - L1MA7 LINE L1 -228 6063 5594 1073 83 0 0 chr6 35296826 35296959 -153982595 + AluSg SINE Alu 5 137 -173 6216 44 14 23 chr6 35296967 35297804 -153981750 + SVA Other Other 596 1425 0 294 53 53 0 chr6 35297861 35297918 -153981636 + A-rich Low_complexity Low_complexity 1 60 0 1161 122 0 0 chr6 35297918 35298074 -153981480 + AluSg SINE Alu 118 273 -37 876 279 24 20 chr6 35298185 35298482 -153981072 + LTR16A LTR ERVL 22 319 -131 214 290 48 16 chr6 35299415 35299477 -153980077 + L2 LINE L2 3134 3197 -75 417 226 78 39 chr6 35299886 35300090 -153979464 - L1MC5 LINE L1 -109 7852 7641 266 53 70 0 chr6 35300168 35300225 -153979329 + CT-rich Low_complexity Low_complexity 2 62 0 250 224 0 0 chr6 35300250 35300308 -153979246 - L1MC5 LINE L1 -519 7442 7385 216 0 0 0 chr6 35300496 35300520 -153979034 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1239 180 52 29 chr6 35300523 35300795 -153978759 - AluJo SINE Alu -30 282 5 345 82 0 0 chr6 35301191 35301240 -153978314 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr6 35301412 35301433 -153978121 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 3363 30 0 0 chr6 35301441 35301838 -153977716 - L1PA4 LINE L1 -3 6152 5756 1963 134 10 6 chr6 35301838 35301903 -153977651 - L1MC1 LINE L1 -6 6327 6264 1879 149 41 56 chr6 35301903 35302245 -153977309 + MER1B DNA MER1_type 1 337 0 1963 134 10 6 chr6 35302245 35302492 -153977062 - L1MC1 LINE L1 -69 6264 6013 27 0 0 0 chr6 35302895 35302922 -153976632 + AT_rich Low_complexity Low_complexity 1 27 0 320 285 123 15 chr6 35302948 35303078 -153976476 - MIR SINE MIR -27 235 92 664 99 3 3 chr6 35305038 35305145 -153974409 + MER51B LTR ERV1 212 303 -74 231 313 40 80 chr6 35306322 35306472 -153973082 + L2 LINE L2 3079 3222 -50 1045 204 62 4 chr6 35308073 35308333 -153971221 + ORSL DNA AcHobo 1 275 0 659 147 17 40 chr6 35308679 35308856 -153970698 + CT-rich Low_complexity Low_complexity 1 173 0 1968 153 10 0 chr6 35308856 35309163 -153970391 - AluJo SINE Alu -2 310 1 24 0 0 0 chr6 35309694 35309718 -153969836 + AT_rich Low_complexity Low_complexity 1 24 0 2267 120 3 0 chr6 35310443 35310752 -153968802 - AluSg SINE Alu 0 310 1 1751 179 34 64 chr6 35311647 35312115 -153967439 + MER90 LTR ERV1 21 474 -140 1011 226 42 58 chr6 35312121 35312502 -153967052 + MLT2C1 LTR ERVL 5 379 -18 445 217 92 0 chr6 35312502 35312622 -153966932 + MER90 LTR ERV1 482 612 -2 369 271 10 0 chr6 35312711 35312807 -153966747 - MIR SINE MIR -108 154 58 624 70 0 0 chr6 35313316 35313402 -153966152 - AluY SINE Alu -4 308 223 1402 75 12 0 chr6 35313402 35313575 -153965979 - AluY SINE Alu -136 175 1 189 329 61 69 chr6 35314125 35314356 -153965198 + MIR SINE MIR 7 235 -27 290 324 29 7 chr6 35314560 35314696 -153964858 - MLT1H LTR MaLR -2 547 409 548 285 43 4 chr6 35314773 35315006 -153964548 - MLT1H LTR MaLR -250 299 14 2349 86 0 13 chr6 35315521 35315824 -153963730 + AluY SINE Alu 1 299 -12 595 186 106 0 chr6 35316154 35316267 -153963287 - FLAM_A SINE Alu -8 125 1 6458 75 8 19 chr6 35316344 35317569 -153961985 + L1PA13 LINE L1 4561 5812 -351 2153 79 68 0 chr6 35317569 35317849 -153961705 + AluY SINE Alu 1 299 -12 6458 75 8 19 chr6 35317849 35318193 -153961361 + L1PA13 LINE L1 5812 6158 -5 1038 200 23 19 chr6 35318205 35318420 -153961134 - MER20 DNA MER1_type -3 216 1 301 248 45 15 chr6 35318420 35318553 -153961001 + L1MEc LINE L1 1846 1982 -4414 1462 261 30 15 chr6 35318597 35319235 -153960319 + L1MEc LINE L1 2143 2754 -3461 2185 102 3 0 chr6 35319736 35320043 -153959511 + AluSq SINE Alu 1 308 0 391 236 7 107 chr6 35320673 35320813 -153958741 - MIR SINE MIR -1 261 136 357 263 45 6 chr6 35320813 35320969 -153958585 + L1M4 LINE L1 2170 2331 -3815 380 254 0 0 chr6 35320977 35321048 -153958506 - MIR SINE MIR -162 100 30 368 230 23 0 chr6 35321346 35321433 -153958121 + MER2 DNA MER2_type 10 98 -247 284 233 17 0 chr6 35321448 35321508 -153958046 + MER2 DNA MER2_type 285 345 0 21 36 0 0 chr6 35322582 35322610 -153956944 + AT_rich Low_complexity Low_complexity 1 28 0 343 372 50 11 chr6 35322623 35322803 -153956751 + HAL1 LINE L1 537 723 -1784 1128 111 50 15 chr6 35323336 35323534 -153956020 + L1MB5 LINE L1 5961 6165 -9 22 80 0 0 chr6 35323655 35323705 -153955849 + AT_rich Low_complexity Low_complexity 1 50 0 1941 163 47 116 chr6 35325250 35325742 -153953812 + MER66B LTR ERV1 29 486 0 481 329 104 27 chr6 35326014 35326388 -153953166 - L1ME LINE L1 -408 5754 5352 25 0 0 0 chr6 35326427 35326452 -153953102 + AT_rich Low_complexity Low_complexity 1 25 0 38 39 0 0 chr6 35326585 35326637 -153952917 + AT_rich Low_complexity Low_complexity 1 52 0 1347 168 0 4 chr6 35326720 35326970 -153952584 - L1M2 LINE L1 -635 5665 5417 497 283 67 100 chr6 35326982 35327517 -153952037 - L1ME LINE L1 -1153 4993 4475 1855 153 20 7 chr6 35327517 35327811 -153951743 - AluSx SINE Alu -14 298 1 497 283 67 100 chr6 35327811 35327827 -153951727 - L1ME LINE L1 -1671 4475 4460 273 373 8 25 chr6 35328029 35328167 -153951387 - MIR SINE MIR -66 142 8 2299 88 0 0 chr6 35328422 35328729 -153950825 - AluY SINE Alu 0 307 1 514 155 10 0 chr6 35329234 35329337 -153950217 - L1M4 LINE L1 -5141 1714 1611 1624 191 8 67 chr6 35329341 35329542 -153950012 + MLT1A1 LTR MaLR 1 170 -195 2789 41 0 0 chr6 35329542 35329883 -153949671 + L1PA4 LINE L1 5815 6155 0 1624 191 8 67 chr6 35329883 35330069 -153949485 + MLT1A1 LTR MaLR 170 365 0 5114 87 13 6 chr6 35330086 35330803 -153948751 - LTR30 LTR ERV1 0 722 1 345 167 26 0 chr6 35330803 35330881 -153948673 - L1M4 LINE L1 -5263 1596 1517 2318 157 64 73 chr6 35330881 35331398 -153948156 + MLT2B1 LTR ERVL 1 512 -8 3584 259 70 63 chr6 35331415 35332845 -153946709 - L1M4 LINE L1 -5337 1522 83 27 0 0 0 chr6 35332985 35333012 -153946542 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 35333914 35333942 -153945612 + AT_rich Low_complexity Low_complexity 1 28 0 3630 170 52 6 chr6 35333986 35334697 -153944857 + Tigger2 DNA MER2_type 1 744 -1974 1160 172 39 0 chr6 35334764 35334997 -153944557 + Tigger2 DNA MER2_type 2461 2702 -16 4955 131 65 31 chr6 35335001 35335447 -153944107 - MER4D LTR ERV1 0 903 474 2299 89 6 13 chr6 35335447 35335761 -153943793 + AluSx SINE Alu 1 312 0 4955 131 65 31 chr6 35335761 35336187 -153943367 - MER4D LTR ERV1 -429 474 1 193 217 192 58 chr6 35336318 35336438 -153943116 - MIR SINE MIR -121 141 6 2126 123 7 0 chr6 35337913 35338215 -153941339 - AluSx SINE Alu -8 304 1 189 275 110 0 chr6 35338505 35338596 -153940958 + MIR SINE MIR 129 229 -33 2102 143 0 3 chr6 35339793 35340183 -153939371 - AluSx SINE Alu 0 389 1 21 57 0 0 chr6 35340203 35340238 -153939316 + AT_rich Low_complexity Low_complexity 1 35 0 236 293 152 0 chr6 35340239 35340338 -153939216 - L2 LINE L2 -1 3312 3199 216 280 13 53 chr6 35340386 35340461 -153939093 + L2 LINE L2 3234 3305 -8 593 264 8 50 chr6 35341076 35341318 -153938236 - L1M4 LINE L1 -1038 5108 4877 238 178 0 0 chr6 35341343 35341388 -153938166 + L1ME3A LINE L1 5888 5932 -238 430 264 33 47 chr6 35341455 35341667 -153937887 + L1ME3A LINE L1 5962 6170 0 2252 121 0 0 chr6 35341713 35342018 -153937536 - AluSg SINE Alu -5 305 1 196 313 15 0 chr6 35343513 35343580 -153935974 + L2 LINE L2 3242 3309 -4 3980 162 20 50 chr6 35344917 35345288 -153934266 - L1MA7 LINE L1 0 6291 5910 2438 88 0 0 chr6 35345288 35345594 -153933960 - AluY SINE Alu -5 306 1 3980 162 20 50 chr6 35345594 35345902 -153933652 - L1MA7 LINE L1 -381 5910 5594 2042 129 0 41 chr6 35345902 35346219 -153933335 - AluSx SINE Alu -8 304 1 3980 162 20 50 chr6 35346219 35346364 -153933190 - L1MA7 LINE L1 -697 5594 5446 2340 108 0 3 chr6 35346364 35346670 -153932884 - AluSc SINE Alu 0 309 5 3980 162 20 50 chr6 35346670 35347309 -153932245 - L1MA7 LINE L1 -845 5446 4789 186 43 0 0 chr6 35347309 35347332 -153932222 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2019 126 0 0 chr6 35347335 35347613 -153931941 - AluSg1 SINE Alu -31 278 1 3980 162 20 50 chr6 35347613 35347743 -153931811 - L1MA7 LINE L1 -1504 4787 4643 945 167 0 10 chr6 35347727 35347925 -153931629 - L1MA7 LINE L1 -1726 4420 4225 * 266 256 0 33 chr6 35347923 35348013 -153931541 + L1M4 LINE L1 2678 2764 -3382 * 1548 175 0 0 chr6 35347996 35348259 -153931295 - L1MB1 LINE L1 -60 6129 5867 1175 135 0 59 chr6 35348262 35348484 -153931070 + L1 LINE L1 5152 5360 -786 512 200 29 0 chr6 35348484 35348589 -153930965 + MLT1A1 LTR MaLR 1 108 -266 2111 92 54 3 chr6 35348979 35349273 -153930281 + AluSc SINE Alu 1 309 0 28 0 0 0 chr6 35350011 35350039 -153929515 + AT_rich Low_complexity Low_complexity 1 28 0 710 198 85 124 chr6 35351305 35351563 -153927991 + MLT1A1 LTR MaLR 118 365 0 185 289 0 0 chr6 35351859 35351904 -153927650 + L3 LINE CR1 1115 1159 -418 22 0 0 0 chr6 35352157 35352179 -153927375 + AT_rich Low_complexity Low_complexity 1 22 0 427 60 0 0 chr6 35352305 35352355 -153927199 + Alu SINE Alu 2 51 -259 281 365 44 22 chr6 35352356 35352537 -153927017 + MIR SINE MIR 68 252 -10 1872 151 0 23 chr6 35352849 35353148 -153926406 - AluSx SINE Alu -20 292 1 184 359 43 11 chr6 35353740 35353832 -153925722 - MIR SINE MIR -94 114 20 259 222 14 0 chr6 35355206 35355278 -153924276 - MER116 DNA Mariner -6 74 2 1741 179 7 0 chr6 35355559 35355850 -153923704 - AluJb SINE Alu -17 295 3 823 321 112 52 chr6 35356072 35356604 -153922950 - L2 LINE L2 -1 3312 2813 2103 114 0 0 chr6 35356604 35356941 -153922613 - AluY SINE Alu 0 337 1 2231 99 0 26 chr6 35356943 35357246 -153922308 - AluSq SINE Alu -16 297 3 823 321 112 52 chr6 35357246 35357314 -153922240 - L2 LINE L2 -500 2813 2751 2104 132 0 3 chr6 35357314 35357624 -153921930 - AluY SINE Alu -2 309 1 823 321 112 52 chr6 35357624 35358431 -153921123 - L2 LINE L2 -562 2751 1813 180 350 12 12 chr6 35358664 35358744 -153920810 - L2 LINE L2 -5 3308 3229 350 172 8 29 chr6 35359652 35359774 -153919780 - MER53 DNA DNA 0 189 1 818 206 36 18 chr6 35360551 35360716 -153918838 + MER20 DNA MER1_type 45 212 -7 311 295 135 39 chr6 35360794 35361180 -153918374 - Tigger4(Zombi) DNA MER2_type -1961 770 348 212 265 0 0 chr6 35361183 35361232 -153918322 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 365 326 73 77 chr6 35361386 35361741 -153917813 + L2 LINE L2 2715 3062 -251 315 0 0 0 chr6 35362685 35362720 -153916834 + (TG)n Simple_repeat Simple_repeat 1 35 0 222 62 0 0 chr6 35362720 35362752 -153916802 + (GA)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr6 35363457 35363507 -153916047 + AT_rich Low_complexity Low_complexity 1 50 0 440 250 228 17 chr6 35364411 35364591 -153914963 - MIR SINE MIR -37 225 8 318 263 0 25 chr6 35365528 35365608 -153913946 + MIR SINE MIR 50 127 -135 1837 137 7 3 chr6 35366501 35366785 -153912769 + LTR12 LTR ERV1 1 285 -429 335 200 33 22 chr6 35366786 35366876 -153912678 + LTR30 LTR ERV1 553 643 -79 795 89 0 0 chr6 35366877 35366978 -153912576 + LTR12 LTR ERV1 481 581 -133 698 142 0 24 chr6 35367681 35367808 -153911746 + L1MA8 LINE L1 6164 6287 -4 382 314 108 35 chr6 35368459 35368800 -153910754 - MLT1L LTR MaLR -4 611 246 231 36 0 0 chr6 35369082 35369110 -153910444 + (CA)n Simple_repeat Simple_repeat 2 29 0 210 213 0 21 chr6 35369110 35369151 -153910403 + (TA)n Simple_repeat Simple_repeat 1 40 0 1246 259 17 3 chr6 35369596 35369893 -153909661 + L1MB8 LINE L1 5523 5823 -343 420 197 0 0 chr6 35369898 35369969 -153909585 + U1 snRNA snRNA 3 73 -92 599 234 7 7 chr6 35369971 35370108 -153909446 + L1PB4 LINE L1 6020 6156 0 962 288 45 14 chr6 35370115 35370473 -153909081 + L1MB8 LINE L1 5808 6176 -2 250 309 48 0 chr6 35370691 35370817 -153908737 + L1P5 LINE L1 5308 5439 -712 1121 263 42 39 chr6 35371973 35372516 -153907038 + L1M4 LINE L1 2581 3125 -3021 1091 313 61 18 chr6 35372541 35372588 -153906966 - L1M4 LINE L1 -1767 4379 4335 2458 167 33 17 chr6 35372588 35373007 -153906547 - MSTB LTR MaLR 0 426 1 1091 313 61 18 chr6 35373007 35373924 -153905630 - L1M4 LINE L1 -1811 4335 3336 2979 206 125 34 chr6 35373936 35374339 -153905215 + L1MDa LINE L1 1492 1857 -4683 1832 182 0 3 chr6 35374339 35374652 -153904902 - AluJb SINE Alu 0 312 1 2979 206 125 34 chr6 35374652 35375309 -153904245 + L1MDa LINE L1 1857 2649 -3891 669 194 41 70 chr6 35375339 35375612 -153903942 - MER52A LTR ERV1 -681 597 221 221 197 16 16 chr6 35376334 35376395 -153903159 + CT-rich Low_complexity Low_complexity 4 64 0 279 345 64 35 chr6 35376455 35376626 -153902928 + MIR SINE MIR 68 243 -19 264 310 161 23 chr6 35377447 35377621 -153901933 - MIR3 SINE MIR -4 204 7 281 179 15 15 chr6 35378962 35379029 -153900525 - MER116 DNA Mariner -8 72 6 566 167 56 9 chr6 35379301 35379409 -153900145 + MER4C LTR ERV1 353 465 0 2507 146 15 0 chr6 35379409 35379812 -153899742 - L1MA7 LINE L1 -458 5833 5425 184 143 0 0 chr6 35382080 35382108 -153897446 - MIR SINE MIR -34 228 201 2166 246 76 4 chr6 35382215 35382755 -153896799 + Zaphod DNA AcHobo 83 661 -3370 316 216 138 66 chr6 35384717 35384898 -153894656 - L1M2 LINE L1 -5889 960 767 266 304 108 0 chr6 35385755 35385857 -153893697 + L2 LINE L2 3201 3313 0 2566 55 0 3 chr6 35386081 35386393 -153893161 - AluY SINE Alu 0 311 1 268 266 26 35 chr6 35390979 35391092 -153888462 + (TCTCTG)n Simple_repeat Simple_repeat 3 114 0 180 97 0 0 chr6 35391249 35391280 -153888274 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 209 0 0 chr6 35391331 35391374 -153888180 - MLT1K LTR MaLR -404 184 142 25 31 0 0 chr6 35393071 35393103 -153886451 + AT_rich Low_complexity Low_complexity 1 32 0 3307 145 61 30 chr6 35393171 35393326 -153886228 - L1MA7 LINE L1 -2 6289 6140 1306 210 52 6 chr6 35393326 35393655 -153885899 - MER2 DNA MER2_type 0 344 1 3307 145 61 30 chr6 35393655 35393736 -153885818 - L1MA7 LINE L1 -151 6140 6063 1657 174 32 0 chr6 35393736 35394018 -153885536 - AluJb SINE Alu -21 291 1 3307 145 61 30 chr6 35394018 35394455 -153885099 - L1MA7 LINE L1 -228 6063 5594 1073 83 0 0 chr6 35394495 35394628 -153884926 + AluSg SINE Alu 5 137 -173 6216 44 14 23 chr6 35394636 35395473 -153884081 + SVA Other Other 596 1425 0 294 53 53 0 chr6 35395530 35395587 -153883967 + A-rich Low_complexity Low_complexity 1 60 0 1161 122 0 0 chr6 35395587 35395743 -153883811 + AluSg SINE Alu 118 273 -37 876 279 24 20 chr6 35395854 35396151 -153883403 + LTR16A LTR ERVL 22 319 -131 214 290 48 16 chr6 35397085 35397147 -153882407 + L2 LINE L2 3134 3197 -75 417 226 78 39 chr6 35397556 35397760 -153881794 - L1MC5 LINE L1 -109 7852 7641 266 53 70 0 chr6 35397838 35397895 -153881659 + CT-rich Low_complexity Low_complexity 2 62 0 250 224 0 0 chr6 35397920 35397978 -153881576 - L1MC5 LINE L1 -519 7442 7385 216 0 0 0 chr6 35398166 35398190 -153881364 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1239 180 52 29 chr6 35398193 35398465 -153881089 - AluJo SINE Alu -30 282 5 345 82 0 0 chr6 35398861 35398910 -153880644 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr6 35399082 35399103 -153880451 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 3363 30 0 0 chr6 35399111 35399508 -153880046 - L1PA4 LINE L1 -3 6152 5756 1963 134 10 6 chr6 35399508 35399573 -153879981 - L1MC1 LINE L1 -6 6327 6264 1879 149 41 56 chr6 35399573 35399915 -153879639 + MER1B DNA MER1_type 1 337 0 1963 134 10 6 chr6 35399915 35400162 -153879392 - L1MC1 LINE L1 -69 6264 6013 27 0 0 0 chr6 35400565 35400592 -153878962 + AT_rich Low_complexity Low_complexity 1 27 0 320 285 123 15 chr6 35400618 35400748 -153878806 - MIR SINE MIR -27 235 92 664 99 3 3 chr6 35402708 35402815 -153876739 + MER51B LTR ERV1 212 303 -74 231 313 40 80 chr6 35403992 35404142 -153875412 + L2 LINE L2 3079 3222 -50 1045 204 62 4 chr6 35405743 35406003 -153873551 + ORSL DNA AcHobo 1 275 0 659 147 17 40 chr6 35406349 35406526 -153873028 + CT-rich Low_complexity Low_complexity 1 173 0 1911 160 10 0 chr6 35406526 35406833 -153872721 - AluJo SINE Alu -2 310 1 24 0 0 0 chr6 35407364 35407388 -153872166 + AT_rich Low_complexity Low_complexity 1 24 0 2267 120 3 0 chr6 35408113 35408422 -153871132 - AluSg SINE Alu 0 310 1 1751 179 34 64 chr6 35409317 35409785 -153869769 + MER90 LTR ERV1 21 474 -140 1011 226 42 58 chr6 35409791 35410172 -153869382 + MLT2C1 LTR ERVL 5 379 -18 445 217 92 0 chr6 35410172 35410292 -153869262 + MER90 LTR ERV1 482 612 -2 369 271 10 0 chr6 35410381 35410477 -153869077 - MIR SINE MIR -108 154 58 624 70 0 0 chr6 35410986 35411072 -153868482 - AluY SINE Alu -4 308 223 1402 75 12 0 chr6 35411072 35411245 -153868309 - AluY SINE Alu -136 175 1 189 329 61 69 chr6 35411795 35412026 -153867528 + MIR SINE MIR 7 235 -27 290 324 29 7 chr6 35412230 35412366 -153867188 - MLT1H LTR MaLR -2 547 409 548 285 43 4 chr6 35412443 35412676 -153866878 - MLT1H LTR MaLR -250 299 14 2349 86 0 13 chr6 35413191 35413494 -153866060 + AluY SINE Alu 1 299 -12 595 186 106 0 chr6 35413824 35413937 -153865617 - FLAM_A SINE Alu -8 125 1 6458 75 8 19 chr6 35414014 35415239 -153864315 + L1PA13 LINE L1 4561 5812 -351 2153 79 68 0 chr6 35415239 35415519 -153864035 + AluY SINE Alu 1 299 -12 6458 75 8 19 chr6 35415519 35415863 -153863691 + L1PA13 LINE L1 5812 6158 -5 1038 200 23 19 chr6 35415875 35416090 -153863464 - MER20 DNA MER1_type -3 216 1 301 248 45 15 chr6 35416090 35416223 -153863331 + L1MEc LINE L1 1846 1982 -4414 1462 261 30 15 chr6 35416267 35416905 -153862649 + L1MEc LINE L1 2143 2754 -3461 2185 102 3 0 chr6 35417406 35417713 -153861841 + AluSq SINE Alu 1 308 0 391 236 7 107 chr6 35418343 35418483 -153861071 - MIR SINE MIR -1 261 136 357 263 45 6 chr6 35418483 35418639 -153860915 + L1M4 LINE L1 2170 2331 -3815 380 254 0 0 chr6 35418647 35418718 -153860836 - MIR SINE MIR -162 100 30 368 230 23 0 chr6 35419016 35419103 -153860451 + MER2 DNA MER2_type 10 98 -247 284 233 17 0 chr6 35419118 35419178 -153860376 + MER2 DNA MER2_type 285 345 0 21 36 0 0 chr6 35420252 35420280 -153859274 + AT_rich Low_complexity Low_complexity 1 28 0 343 372 50 11 chr6 35420293 35420473 -153859081 + HAL1 LINE L1 537 723 -1784 1128 111 50 15 chr6 35421006 35421204 -153858350 + L1MB5 LINE L1 5961 6165 -9 22 80 0 0 chr6 35421325 35421375 -153858179 + AT_rich Low_complexity Low_complexity 1 50 0 1941 163 47 116 chr6 35422919 35423411 -153856143 + MER66B LTR ERV1 29 486 0 481 329 104 27 chr6 35423683 35424057 -153855497 - L1ME LINE L1 -408 5754 5352 25 0 0 0 chr6 35424096 35424121 -153855433 + AT_rich Low_complexity Low_complexity 1 25 0 38 39 0 0 chr6 35424254 35424306 -153855248 + AT_rich Low_complexity Low_complexity 1 52 0 1347 168 0 4 chr6 35424389 35424639 -153854915 - L1M2 LINE L1 -635 5665 5417 497 283 67 100 chr6 35424651 35425186 -153854368 - L1ME LINE L1 -1153 4993 4475 1855 153 20 7 chr6 35425186 35425480 -153854074 - AluSx SINE Alu -14 298 1 497 283 67 100 chr6 35425480 35425496 -153854058 - L1ME LINE L1 -1671 4475 4460 273 373 8 25 chr6 35425698 35425836 -153853718 - MIR SINE MIR -66 142 8 2299 88 0 0 chr6 35426091 35426398 -153853156 - AluY SINE Alu 0 307 1 514 155 10 0 chr6 35426903 35427006 -153852548 - L1M4 LINE L1 -5141 1401 1298 1624 191 8 67 chr6 35427010 35427211 -153852343 + MLT1A1 LTR MaLR 1 170 -195 2789 41 0 0 chr6 35427211 35427552 -153852002 + L1PA4 LINE L1 5815 6155 0 1624 191 8 67 chr6 35427552 35427738 -153851816 + MLT1A1 LTR MaLR 170 365 0 323 26 0 0 chr6 35427755 35427793 -153851761 - LTR30 LTR ERV1 0 722 685 3279 106 43 11 chr6 35428545 35429085 -153850469 - L1MA1 LINE L1 -3 6299 5743 11859 151 14 39 chr6 35429086 35432064 -153847490 - L1MA1 LINE L1 -628 5674 2780 521 141 0 0 chr6 35432064 35432142 -153847412 + FLAM_C SINE Alu 33 110 -33 314 297 54 14 chr6 35432494 35432642 -153846912 - L1ME4a LINE L1 -201 5920 5767 2350 82 3 0 chr6 35432649 35432942 -153846612 + AluSq SINE Alu 1 294 -19 1735 33 0 9 chr6 35433212 35433424 -153846130 + L1PA5 LINE L1 5936 6145 -9 34 0 0 0 chr6 35433425 35433459 -153846095 + AT_rich Low_complexity Low_complexity 1 34 0 398 224 102 20 chr6 35433545 35433692 -153845862 - L1MC4 LINE L1 -126 7916 7758 548 87 33 0 chr6 35533990 35534082 -153745472 + L1PB1 LINE L1 6056 6150 -1 2271 107 0 0 chr6 35534099 35534399 -153745155 + AluSg SINE Alu 1 300 -10 904 264 51 34 chr6 35534403 35534911 -153744643 - L1M4 LINE L1 -2045 4101 3585 1496 181 14 69 chr6 35534912 35535276 -153744278 - MER2 DNA MER2_type -1 344 1 267 328 20 5 chr6 35535331 35535529 -153744025 - L1M4 LINE L1 -2618 3528 3328 2907 40 0 0 chr6 35535719 35536071 -153743483 - L1PA4 LINE L1 -5 6150 5799 363 43 0 0 chr6 35536071 35536118 -153743436 + L1PA4 LINE L1 5757 5803 -352 266 0 29 0 chr6 35536309 35536343 -153743211 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7575 27 6 0 chr6 35536344 35537613 -153741941 - L1PA3 LINE L1 -11 6144 4873 389 386 50 33 chr6 35537843 35538206 -153741348 - L1MEc LINE L1 -5997 399 31 200 94 31 0 chr6 35538326 35538358 -153741196 + (CA)n Simple_repeat Simple_repeat 2 34 0 3274 157 80 1 chr6 35538371 35539048 -153740506 + Tigger3b DNA MER2_type 1 730 -501 7896 165 16 1 chr6 35539048 35540535 -153739019 + L1PA11 LINE L1 2605 4112 -2034 6528 132 30 0 chr6 35540561 35540941 -153738613 + L1PA11 LINE L1 4262 4629 -1545 2306 99 0 3 chr6 35540941 35541233 -153738321 - AluSg SINE Alu -19 291 1 6528 132 30 0 chr6 35541233 35542757 -153736797 + L1PA11 LINE L1 4629 6171 -3 1451 86 37 29 chr6 35542761 35543006 -153736548 + Tigger3b DNA MER2_type 724 970 -262 2292 193 26 94 chr6 35543030 35543708 -153735846 - MER21B LTR ERV1 -14 849 218 802 239 15 15 chr6 35543711 35543971 -153735583 + L1 LINE L1 4214 4473 -1673 * 42558 61 2 1 chr6 35543970 35550120 -153729434 + L1PA6 LINE L1 2 6154 0 203 133 44 0 chr6 35550139 35550184 -153729370 + (TA)n Simple_repeat Simple_repeat 1 47 0 7097 170 32 10 chr6 35550186 35551560 -153727994 + L1 LINE L1 2908 4311 -1835 956 171 0 51 chr6 35551560 35551577 -153727977 + AluJb SINE Alu 125 141 -171 1250 204 70 35 chr6 35551577 35551861 -153727693 + AluJo SINE Alu 1 294 -18 956 171 0 51 chr6 35551861 35552018 -153727536 + AluJb SINE Alu 141 290 -22 189 319 88 26 chr6 35552973 35553086 -153726468 + MIR SINE MIR 20 139 -123 525 16 0 0 chr6 35553654 35553716 -153725838 + (TC)n Simple_repeat Simple_repeat 1 62 0 622 255 202 36 chr6 35553724 35554144 -153725410 + L2 LINE L2 1218 1707 -1607 717 191 24 0 chr6 35554297 35554309 -153725245 - FLAM_C SINE Alu -182 130 120 210 37 0 0 chr6 35554309 35554336 -153725218 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 717 191 24 0 chr6 35554336 35554449 -153725105 - FLAM_C SINE Alu -192 120 2 306 258 71 58 chr6 35554516 35554671 -153724883 - HAL1 LINE L1 -1384 1123 967 351 304 43 19 chr6 35555244 35555405 -153724149 - L1MC/D LINE L1 -2029 5779 5615 1595 140 92 15 chr6 35555455 35555726 -153723828 - AluJb SINE Alu -20 292 1 1299 255 34 13 chr6 35555997 35556538 -153723016 + MER90 LTR ERV1 1 559 -16 559 157 74 0 chr6 35557374 35557482 -153722072 + Charlie1 DNA MER1_type 2164 2279 -482 1309 181 8 4 chr6 35557482 35557725 -153721829 - L1 LINE L1 -2011 4135 3892 393 75 0 0 chr6 35557728 35557781 -153721773 + (GA)n Simple_repeat Simple_repeat 2 54 0 214 222 19 0 chr6 35558158 35558212 -153721342 - MIR SINE MIR -72 136 82 423 0 0 0 chr6 35558503 35558550 -153721004 + (A)n Simple_repeat Simple_repeat 1 47 0 396 231 37 15 chr6 35558561 35558695 -153720859 + L1ME3A LINE L1 5265 5401 -958 772 32 0 0 chr6 35558695 35558788 -153720766 + AluY SINE Alu 212 304 -7 1286 172 76 30 chr6 35558790 35559092 -153720462 + L1ME3A LINE L1 5392 5707 -652 216 0 0 0 chr6 35559110 35559134 -153720420 + (A)n Simple_repeat Simple_repeat 1 24 0 274 235 139 42 chr6 35559372 35559538 -153720016 + L1ME3A LINE L1 5988 6169 -1 264 160 0 40 chr6 35560299 35560349 -153719205 - MLT2B1 LTR ERVL 0 520 473 747 236 16 16 chr6 35560349 35560531 -153719023 - MLT2D LTR ERVL -232 182 1 190 250 0 0 chr6 35560562 35560606 -153718948 + MIR SINE MIR 211 254 -8 616 188 116 0 chr6 35561384 35561496 -153718058 + FLAM_C SINE Alu 3 127 -16 195 301 24 0 chr6 35562085 35562168 -153717386 - MIR3 SINE MIR -43 165 81 505 312 59 21 chr6 35562645 35563020 -153716534 + HAL1 LINE L1 1841 2229 -278 430 93 27 0 chr6 35663302 35663377 -153616177 + AluSc SINE Alu 232 308 -1 1787 159 3 38 chr6 35663433 35663753 -153615801 + AluSx SINE Alu 1 309 -3 348 283 20 0 chr6 35664492 35664591 -153614963 + MIR SINE MIR 45 145 -63 2248 185 42 11 chr6 35665660 35666108 -153613446 + MLT1C LTR MaLR 6 467 0 2038 223 95 13 chr6 35666329 35666853 -153612701 + MLT1F1 LTR MaLR 1 567 0 474 190 100 10 chr6 35667343 35667443 -153612111 - MER45A DNA AcHobo 0 178 70 645 218 52 15 chr6 35667564 35667816 -153611738 + LTR16C LTR ERVL 167 491 0 200 340 100 27 chr6 35667966 35668116 -153611438 - L2 LINE L2 -528 2786 2626 718 205 24 12 chr6 35668676 35668842 -153610712 - MER5B DNA MER1_type 0 178 11 783 235 101 0 chr6 35668945 35669124 -153610430 - MLT1J LTR MaLR -313 198 2 183 289 79 0 chr6 35669825 35669901 -153609653 - MIR SINE MIR -107 155 74 2293 126 95 18 chr6 35670906 35671294 -153608260 - MSTA LTR MaLR -7 421 4 813 146 0 44 chr6 35671318 35671455 -153608099 + FLAM_C SINE Alu 3 133 0 1036 216 69 10 chr6 35671479 35671789 -153607765 + MSTC-int LTR MaLR 1227 1580 0 1813 133 200 3 chr6 35671789 35672104 -153607450 + MSTC LTR MaLR 1 377 -51 381 235 108 13 chr6 35672105 35672344 -153607210 + L1MC4a LINE L1 5265 5550 -626 1223 146 275 0 chr6 35672354 35672634 -153606920 - LTR29 LTR ERV1 -262 360 4 1073 143 7 103 chr6 35672665 35672905 -153606649 + Charlie5 DNA MER1_type 2339 2552 -33 1999 128 7 20 chr6 35672905 35673202 -153606352 - AluSx SINE Alu -19 293 1 1073 143 7 103 chr6 35673202 35673234 -153606320 + Charlie5 DNA MER1_type 2552 2585 0 23 0 0 0 chr6 35673268 35673291 -153606263 + AT_rich Low_complexity Low_complexity 1 23 0 398 259 170 30 chr6 35673464 35673865 -153605689 + L1MC/D LINE L1 5304 5760 -2048 3603 175 28 49 chr6 35674019 35674768 -153604786 - MER44D DNA MER2_type 0 605 1 1419 211 83 52 chr6 35674832 35675185 -153604369 + MER84 LTR ERVI 14 387 -120 4424 101 79 8 chr6 35675185 35675465 -153604089 - LTR8 LTR ERV1 0 691 432 1839 103 3 62 chr6 35675465 35675756 -153603798 + AluSq SINE Alu 35 308 -5 4424 101 79 8 chr6 35675756 35676120 -153603434 - LTR8 LTR ERV1 -259 432 1 1419 211 83 52 chr6 35676120 35676245 -153603309 + MER84 LTR ERVI 387 507 0 482 299 85 14 chr6 35676245 35676599 -153602955 + L1MC4a LINE L1 5562 5940 -1868 29 47 0 0 chr6 35676790 35676833 -153602721 + AT_rich Low_complexity Low_complexity 1 43 0 995 237 122 35 chr6 35677159 35677354 -153602200 + MER58B DNA MER1_type 3 236 -2184 2153 84 0 42 chr6 35677354 35677664 -153601890 - AluSx SINE Alu -15 297 1 995 237 122 35 chr6 35677664 35677780 -153601774 + MER58B DNA MER1_type 236 341 0 255 331 7 22 chr6 35678823 35678959 -153600595 - L2 LINE L2 -2 3270 3137 21 0 0 0 chr6 35679495 35679516 -153600038 + GC_rich Low_complexity Low_complexity 1 21 0 899 111 19 167 chr6 35681203 35681419 -153598135 - MER30B DNA MER1_type 0 190 7 2167 136 3 0 chr6 35683665 35683975 -153595579 + AluSx SINE Alu 2 312 0 344 249 96 8 chr6 35684753 35684878 -153594676 - MIR SINE MIR -61 147 37 * 436 300 33 0 chr6 35684876 35684996 -153594558 - L2 LINE L2 -10 3262 3139 1262 265 160 22 chr6 35685534 35686020 -153593534 - MER20B DNA MER1_type -6 777 169 2439 72 0 25 chr6 35686020 35686339 -153593215 - AluY SINE Alu 0 311 1 1262 265 160 22 chr6 35686339 35686535 -153593019 - MER20B DNA MER1_type -614 169 1 258 254 0 0 chr6 35686633 35686692 -153592862 + (CA)n Simple_repeat Simple_repeat 2 60 0 1084 238 66 14 chr6 35687419 35687705 -153591849 - AluJo SINE Alu -1 301 1 252 78 0 62 chr6 35687963 35688027 -153591527 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1437 199 0 14 chr6 35688028 35688305 -153591249 - AluJb SINE Alu -39 273 1 652 160 0 0 chr6 35689047 35689147 -153590407 - Tigger1 DNA MER2_type 0 2418 2319 10044 115 151 82 chr6 35689147 35689803 -153589751 - Tigger1 DNA MER2_type -236 2182 1573 2173 108 0 17 chr6 35689803 35690099 -153589455 + AluSq SINE Alu 1 291 -22 10044 115 151 82 chr6 35690099 35690110 -153589444 - Tigger1 DNA MER2_type -845 1573 1564 754 206 0 0 chr6 35690110 35690236 -153589318 + FLAM_C SINE Alu 2 127 -16 10044 115 151 82 chr6 35690236 35691483 -153588071 - Tigger1 DNA MER2_type -854 1564 1 1884 93 12 0 chr6 35691827 35692073 -153587481 - AluSx SINE Alu -5 307 59 1813 91 13 0 chr6 35792073 35792305 -153487249 - AluSc SINE Alu -74 235 1 2083 131 10 3 chr6 35793504 35793801 -153485753 + AluSx SINE Alu 1 299 -13 2264 91 14 0 chr6 35793805 35794101 -153485453 + AluSc SINE Alu 1 300 -9 212 319 152 1 chr6 35794775 35794920 -153484634 + MIR SINE MIR 41 205 -57 220 192 51 51 chr6 35797153 35797231 -153482323 + MER5A DNA MER1_type 9 86 -103 267 350 43 7 chr6 35797335 35797475 -153482079 + MER5A DNA MER1_type 45 189 0 2161 99 14 0 chr6 35797744 35798055 -153481499 + AluSq SINE Alu 1 315 0 210 348 54 0 chr6 35800224 35800336 -153479218 + MIR SINE MIR 35 152 -110 1267 206 14 1 chr6 35801010 35801325 -153478229 + L1PA15 LINE L1 2710 3028 -3821 * 11926 181 49 12 chr6 35801319 35801453 -153478101 + L1PA15 LINE L1 3354 3482 -3386 2067 138 3 3 chr6 35801453 35801750 -153477804 + AluSx SINE Alu 1 297 -15 11926 181 49 12 chr6 35801750 35804629 -153474925 + L1PA15 LINE L1 3482 6496 -372 2108 99 34 10 chr6 35804629 35804921 -153474633 + AluSg SINE Alu 3 301 -9 11926 181 49 12 chr6 35804921 35805309 -153474245 + L1PA15 LINE L1 6496 6868 0 1467 215 7 4 chr6 35805341 35805620 -153473934 + AluJo SINE Alu 1 280 -32 215 255 199 41 chr6 35805779 35805975 -153473579 + MIR SINE MIR 21 247 -15 582 301 85 19 chr6 35806373 35806632 -153472922 + MLT1I LTR MaLR 121 396 -13 2180 125 0 0 chr6 35807145 35807440 -153472114 - AluSx SINE Alu -15 297 3 706 237 88 40 chr6 35808566 35808794 -153470760 - MIR SINE MIR -10 252 14 249 277 101 26 chr6 35808827 35809022 -153470532 + L2 LINE L2 2979 3272 0 275 227 30 15 chr6 35809045 35809111 -153470443 + L1ME LINE L1 3 69 -6001 615 285 142 11 chr6 35809148 35809415 -153470139 + L3 LINE CR1 1251 1552 -25 233 254 95 56 chr6 35809474 35809600 -153469954 + MIR SINE MIR 76 206 -56 208 191 21 0 chr6 35809600 35809647 -153469907 + T-rich Low_complexity Low_complexity 2 49 0 540 231 0 0 chr6 35812123 35812231 -153467323 + MLT2D LTR ERVL 238 345 -69 249 213 0 0 chr6 35812878 35812925 -153466629 - L2 LINE L2 -88 3184 3138 7186 157 38 2 chr6 35814017 35815708 -153463846 + L1P4 LINE L1 3971 5725 -436 2212 108 10 16 chr6 35815708 35816022 -153463532 + AluSp SINE Alu 1 312 -1 7566 114 51 7 chr6 35816024 35817367 -153462187 + L1M1 LINE L1 2419 3835 -3730 2351 175 36 10 chr6 35817367 35817784 -153461770 + MSTA LTR MaLR 1 428 0 10337 153 22 9 chr6 35817784 35819413 -153460141 + MSTA-int LTR MaLR 1 1651 0 503 293 136 38 chr6 35919498 35919843 -153359711 + L3 LINE CR1 946 1324 -253 180 175 100 0 chr6 35919919 35919959 -153359595 + L2 LINE L2 3220 3263 -9 2378 103 0 0 chr6 35920396 35920697 -153358857 - AluSq SINE Alu -12 301 1 26 30 0 0 chr6 35920701 35920734 -153358820 + AT_rich Low_complexity Low_complexity 1 33 0 720 176 84 27 chr6 35920863 35921117 -153358437 + HsTC2 DNA Tc2 3 308 -1590 554 283 29 0 chr6 35921156 35921329 -153358225 + HsTC2 DNA Tc2 1721 1898 0 1884 137 0 29 chr6 35921586 35921892 -153357662 - AluJb SINE Alu -14 298 2 23 0 0 0 chr6 35922323 35922346 -153357208 + AT_rich Low_complexity Low_complexity 1 23 0 2335 81 3 3 chr6 35922434 35922732 -153356822 - AluSq SINE Alu -15 298 1 852 128 0 71 chr6 35923455 35923596 -153355958 - FLAM_C SINE Alu -10 133 3 723 171 137 55 chr6 35924959 35925105 -153354449 - FRAM SINE Alu -8 158 1 1112 170 0 1 chr6 35925128 35925351 -153354203 - AluJo SINE Alu -30 282 28 891 152 0 0 chr6 35925365 35925490 -153354064 - AluJo SINE Alu -177 125 1 2351 106 3 0 chr6 35927088 35927400 -153352154 + AluSq SINE Alu 1 313 0 3133 126 26 67 chr6 35928710 35929280 -153350274 - LTR10A LTR ERV1 -62 547 1 563 201 76 7 chr6 35929672 35929816 -153349738 - MER5B DNA MER1_type -24 154 1 2067 104 3 20 chr6 35930137 35930435 -153349119 + AluSx SINE Alu 1 293 -19 462 272 78 52 chr6 35931107 35931437 -153348117 + L1MC4a LINE L1 5531 5819 -302 2100 69 4 11 chr6 35932041 35932303 -153347251 + AluSg SINE Alu 1 260 -50 630 199 26 33 chr6 35934522 35934717 -153344837 + L1MB8 LINE L1 5975 6178 0 2383 53 0 3 chr6 35935206 35935521 -153344033 + AluY SINE Alu 1 314 0 2017 128 0 29 chr6 35936297 35936603 -153342951 - AluJo SINE Alu -15 297 1 525 314 123 5 chr6 35936638 35936858 -153342696 + MIR SINE MIR 2 247 -15 22 0 0 0 chr6 35936867 35936889 -153342665 + AT_rich Low_complexity Low_complexity 1 22 0 3652 182 57 90 chr6 35937069 35938153 -153341401 - L1MD3 LINE L1 0 8042 7008 291 301 53 18 chr6 35938433 35938546 -153341008 + MIR SINE MIR 96 212 -50 199 170 128 0 chr6 35938636 35938683 -153340871 - MIR SINE MIR -114 148 96 27 0 0 0 chr6 35940705 35940732 -153338822 + AT_rich Low_complexity Low_complexity 1 27 0 2743 147 11 71 chr6 35940913 35940962 -153338592 + L1PB4 LINE L1 5656 5706 -450 2243 94 0 10 chr6 35940962 35941274 -153338280 - AluSx SINE Alu 0 309 1 2743 147 11 71 chr6 35941274 35941729 -153337825 + L1PB4 LINE L1 5706 6130 -26 1626 174 41 10 chr6 35941729 35942023 -153337531 - AluJo SINE Alu -9 303 1 2743 147 11 71 chr6 35942023 35942048 -153337506 + L1PB4 LINE L1 6130 6155 -1 2132 138 0 0 chr6 35942929 35943227 -153336327 - AluSx SINE Alu -3 309 12 773 153 0 32 chr6 35943348 35943472 -153336082 - FRAM SINE Alu -14 162 43 617 137 11 0 chr6 35944039 35944134 -153335420 + FRAM SINE Alu 75 170 -6 229 282 0 26 chr6 35944254 35944332 -153335222 + L1MC5 LINE L1 7832 7907 -54 236 218 69 89 chr6 35945303 35945404 -153334150 - MIR SINE MIR -40 222 124 507 214 29 86 chr6 35946083 35946126 -153333428 - MER5B DNA MER1_type -1 177 133 2283 93 7 0 chr6 35946126 35946427 -153333127 - AluSg SINE Alu -6 304 2 507 214 29 86 chr6 35946427 35946523 -153333031 - MER5B DNA MER1_type -45 133 46 2336 69 0 3 chr6 35946788 35947112 -153332442 + AluY SINE Alu 1 311 0 465 278 81 0 chr6 35947249 35947422 -153332132 + MIR SINE MIR 35 221 -41 2230 104 0 0 chr6 35947702 35948009 -153331545 + AluSc SINE Alu 1 307 0 963 167 42 0 chr6 35948836 35949004 -153330550 - AluSg/x SINE Alu -2 308 134 715 125 36 0 chr6 35949004 35949116 -153330438 + AluSg/x SINE Alu 182 297 -13 450 36 0 0 chr6 35949116 35949172 -153330382 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 500 231 319 0 chr6 35951316 35951498 -153328056 + MIR SINE MIR 23 262 0 1967 133 4 0 chr6 35951556 35951834 -153327720 + AluJb SINE Alu 1 279 -33 628 183 87 0 chr6 35951941 35952056 -153327498 - FLAM_A SINE Alu -6 127 3 224 209 60 15 chr6 35952932 35952999 -153326555 + MIR SINE MIR 123 192 -70 2353 105 0 6 chr6 35953281 35953595 -153325959 - AluSq SINE Alu 0 313 2 972 223 147 44 chr6 35954032 35954541 -153325013 - MLT1G LTR MaLR -5 537 3 709 126 0 9 chr6 35954683 35954794 -153324760 - L1MA3 LINE L1 0 6305 6196 2331 155 45 55 chr6 35955198 35955708 -153323846 - MLT1D LTR MaLR 0 505 1 2171 132 0 0 chr6 35955858 35956154 -153323400 - AluSx SINE Alu -16 296 1 229 337 35 0 chr6 35957320 35957406 -153322148 - L2 LINE L2 -31 3241 3153 335 219 248 0 chr6 35957544 35957649 -153321905 + MER94 DNA DNA 1 131 -3 1964 150 14 7 chr6 35957724 35958018 -153321536 - AluJb SINE Alu -16 296 1 195 42 0 0 chr6 35958600 35958624 -153320930 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 217 200 10 70 chr6 35962142 35962242 -153317312 + G-rich Low_complexity Low_complexity 5 98 0 197 163 0 23 chr6 35962889 35962932 -153316622 + MIR SINE MIR 113 154 -108 238 252 233 0 chr6 35963250 35963353 -153316201 + L2 LINE L2 3144 3270 -2 182 312 94 51 chr6 35964017 35964155 -153315399 - MIR3 SINE MIR -61 147 4 276 30 0 0 chr6 35964230 35964263 -153315291 + (TG)n Simple_repeat Simple_repeat 1 33 0 1884 118 0 8 chr6 35965132 35965394 -153314160 + AluSq SINE Alu 1 260 -53 232 48 48 0 chr6 35965399 35965441 -153314113 + (CAA)n Simple_repeat Simple_repeat 2 45 0 193 232 43 58 chr6 35965473 35965542 -153314012 - L2 LINE L2 -9 3304 3237 2349 84 0 32 chr6 35966434 35966742 -153312812 - AluSg SINE Alu -12 298 1 197 276 13 40 chr6 35966760 35966836 -153312718 - MER5A DNA MER1_type -3 186 113 351 310 152 6 chr6 35967053 35967211 -153312343 + MIR3 SINE MIR 20 200 -8 276 174 0 0 chr6 35968270 35968316 -153311238 - Charlie1 DNA MER1_type -15 2746 2701 * 336 295 0 0 chr6 35968302 35968380 -153311174 - Charlie1 DNA MER1_type -2679 82 5 2404 82 0 3 chr6 35968604 35968908 -153310646 - AluSg SINE Alu -7 303 1 350 308 147 0 chr6 35969089 35969245 -153310309 + LTR33 LTR ERVL 34 212 -309 1049 226 186 75 chr6 35971799 35972248 -153307306 + L2 LINE L2 2334 2731 -582 1914 149 0 14 chr6 35972248 35972543 -153307011 - AluSx SINE Alu -21 291 1 1049 226 186 75 chr6 35972543 35972893 -153306661 + L2 LINE L2 2731 3041 -272 213 39 0 0 chr6 35972893 35972919 -153306635 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2352 84 0 3 chr6 35972924 35973210 -153306344 - AluSx SINE Alu -27 285 1 1049 226 186 75 chr6 35973210 35973230 -153306324 + L2 LINE L2 3044 3311 -2 2132 128 7 3 chr6 35973657 35973961 -153305593 + AluSx SINE Alu 1 305 -7 3572 159 32 10 chr6 35973961 35974585 -153304969 - L1MB2 LINE L1 -13 6158 5521 2036 134 0 10 chr6 35974642 35974971 -153304583 + AluSx SINE Alu 1 326 0 1369 168 137 18 chr6 35975900 35976228 -153303326 - MER58D DNA MER1_type -3 383 17 2437 88 0 0 chr6 35976501 35976795 -153302759 + AluSc SINE Alu 1 294 -15 677 194 6 0 chr6 35977903 35978068 -153301486 + (CAT)n Simple_repeat Simple_repeat 2 167 0 * 743 159 7 0 chr6 35978039 35978190 -153301364 + (CCA)n Simple_repeat Simple_repeat 1 152 0 975 120 0 0 chr6 35978211 35978429 -153301125 + (CCA)n Simple_repeat Simple_repeat 1 218 0 567 239 0 0 chr6 35978456 35978623 -153300931 + (CCA)n Simple_repeat Simple_repeat 1 167 0 372 248 0 0 chr6 35978681 35978798 -153300756 + (CCA)n Simple_repeat Simple_repeat 2 118 0 258 235 0 47 chr6 35978799 35978884 -153300670 - MIR SINE MIR -110 152 72 1834 154 3 17 chr6 35980871 35981163 -153298391 + AluJb SINE Alu 1 288 -24 201 74 0 0 chr6 35983083 35983110 -153296444 + (CAT)n Simple_repeat Simple_repeat 3 29 0 267 31 0 0 chr6 35983394 35983426 -153296128 + (TG)n Simple_repeat Simple_repeat 1 32 0 209 146 21 0 chr6 35983426 35983474 -153296080 + GA-rich Low_complexity Low_complexity 2 50 0 209 171 0 0 chr6 35983511 35983546 -153296008 + CT-rich Low_complexity Low_complexity 2 36 0 375 315 40 7 chr6 35984035 35984184 -153295370 - MIR3 SINE MIR -38 170 17 538 280 126 5 chr6 35984325 35984532 -153295022 - MIR SINE MIR -27 235 4 2388 95 3 13 chr6 35986105 35986421 -153293133 + AluSq SINE Alu 1 313 0 330 107 0 0 chr6 35986431 35986487 -153293067 + (GA)n Simple_repeat Simple_repeat 1 56 0 222 37 0 0 chr6 35987503 35987530 -153292024 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 409 242 47 71 chr6 35988280 35988500 -153291054 + MER20B DNA MER1_type 1 219 0 21 0 0 0 chr6 35988629 35988650 -153290904 + AT_rich Low_complexity Low_complexity 1 21 0 486 236 55 0 chr6 35988763 35988902 -153290652 - MIR SINE MIR -63 145 44 2824 143 33 18 chr6 35989106 35989561 -153289993 + MLT1C LTR MaLR 6 467 0 258 312 0 0 chr6 35989572 35989649 -153289905 + MIR SINE MIR 169 245 -17 260 298 125 0 chr6 35989707 35989811 -153289743 - L3b LINE CR1 -270 1313 1197 308 299 60 12 chr6 35989925 35990092 -153289462 + L1MB8 LINE L1 5774 5948 -230 571 239 178 15 chr6 35990121 35990318 -153289236 - MIR SINE MIR -33 229 1 328 230 86 53 chr6 35990350 35990502 -153289052 - MER34B LTR ERV1 -183 382 226 367 143 48 24 chr6 35990614 35990698 -153288856 - MER34C LTR ERV1 -471 114 29 35 0 0 0 chr6 35991242 35991277 -153288277 + AT_rich Low_complexity Low_complexity 1 35 0 2154 103 0 26 chr6 35991731 35992033 -153287521 - AluSx SINE Alu -18 294 1 198 278 191 8 chr6 35992466 35992592 -153286962 + MIR SINE MIR 8 156 -106 367 310 30 10 chr6 35993253 35993453 -153286101 + Charlie2 DNA MER1_type 1855 2058 -804 3444 32 0 0 chr6 35993489 35994090 -153285464 - L1PA4 LINE L1 -498 5657 5057 4017 59 0 0 chr6 35994090 35994576 -153284978 + L1PA4 LINE L1 5659 6147 -8 5466 184 24 46 chr6 35994591 35995727 -153283827 + L1M4 LINE L1 -215 895 -5385 2087 221 37 71 chr6 35995715 35995955 -153283599 + L1M4 LINE L1 1323 1570 -4993 * 1709 130 28 0 chr6 35995955 35996239 -153283315 + L1MA4 LINE L1 6009 6300 0 2087 221 37 71 chr6 35996239 35996868 -153282686 + L1M4 LINE L1 1570 2302 -4261 936 195 43 17 chr6 35996890 35997121 -153282433 + Charlie2 DNA MER1_type 2040 2276 -586 27 29 0 0 chr6 35997135 35997169 -153282385 + AT_rich Low_complexity Low_complexity 1 34 0 2185 112 28 0 chr6 35997169 35997454 -153282100 - AluSx SINE Alu -19 293 1 1089 110 0 0 chr6 35997526 35997671 -153281883 + AluSg/x SINE Alu 157 301 -11 215 192 40 19 chr6 35998090 35998152 -153281402 + GA-rich Low_complexity Low_complexity 1 63 0 189 174 43 14 chr6 35998807 35998876 -153280678 + GA-rich Low_complexity Low_complexity 1 71 0 2518 87 3 0 chr6 35999598 35999910 -153279644 - AluSp SINE Alu 0 313 1 2149 187 66 0 chr6 36003458 36003865 -153275689 + MER63B DNA MER1_type 2 435 -1 978 201 3 106 chr6 36004027 36004131 -153275423 + MLT1A2 LTR MaLR 1 114 -260 2200 98 3 17 chr6 36004131 36004426 -153275128 + AluSp SINE Alu 1 291 -22 978 201 3 106 chr6 36004426 36004614 -153274940 + MLT1A2 LTR MaLR 114 263 -111 1378 211 63 46 chr6 36004655 36005093 -153274461 + MER39 LTR ERV1 67 707 0 587 150 50 0 chr6 36005106 36005206 -153274348 + MLT1A2 LTR MaLR 286 390 0 1922 161 28 0 chr6 36005536 36005827 -153273727 - AluJb SINE Alu -13 299 1 351 180 123 49 chr6 36006264 36006386 -153273168 - L1ME4a LINE L1 -21 6100 5970 22 0 0 0 chr6 36006778 36006800 -153272754 + AT_rich Low_complexity Low_complexity 1 22 0 2350 88 0 16 chr6 36006802 36007108 -153272446 + AluSx SINE Alu 1 301 -11 443 299 68 32 chr6 36007115 36007393 -153272161 - L1ME4a LINE L1 -2 6119 5832 30 0 0 0 chr6 36007546 36007576 -153271978 + AT_rich Low_complexity Low_complexity 1 30 0 580 288 47 33 chr6 36007581 36007793 -153271761 - MIR SINE MIR -35 227 13 889 203 21 10 chr6 36008316 36008508 -153271046 - MIR SINE MIR -10 252 59 225 361 17 8 chr6 36008552 36008671 -153270883 - L2 LINE L2 -159 3113 2994 2340 87 0 10 chr6 36008671 36008983 -153270571 + AluY SINE Alu 1 309 -2 234 274 167 27 chr6 36009011 36009274 -153270280 + L1ME LINE L1 5523 5822 -299 1277 197 4 17 chr6 36009793 36010032 -153269522 - MLT1C LTR MaLR -2 465 230 912 193 6 0 chr6 36010033 36010194 -153269360 - FRAM SINE Alu -14 162 1 945 143 26 2 chr6 36010197 36010389 -153269165 - MLT1C LTR MaLR -233 234 2 190 185 25 185 chr6 36010832 36010913 -153268641 + L2 LINE L2 3126 3193 -79 1610 181 10 91 chr6 36011249 36011601 -153267953 - MLT1A1 LTR MaLR 0 365 47 1806 166 0 13 chr6 36011601 36011909 -153267645 - AluJb SINE Alu -8 304 1 1610 181 10 91 chr6 36011909 36011953 -153267601 - MLT1A1 LTR MaLR -318 47 1 255 366 40 40 chr6 36012090 36012265 -153267289 - L2 LINE L2 -6 3266 3092 262 191 79 0 chr6 36012563 36012626 -153266928 + MIR SINE MIR 85 152 -56 712 276 60 13 chr6 36012670 36012713 -153266841 - MIR SINE MIR -13 249 209 2138 102 17 7 chr6 36012713 36013006 -153266548 - AluSx SINE Alu -16 296 1 712 276 60 13 chr6 36013006 36013194 -153266360 - MIR SINE MIR -53 209 7 2108 120 20 3 chr6 36014113 36014412 -153265142 - AluSq SINE Alu -9 304 1 247 267 0 0 chr6 36014586 36014672 -153264882 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 243 240 0 0 chr6 36014797 36014847 -153264707 + (TG)n Simple_repeat Simple_repeat 2 51 0 4181 223 68 8 chr6 36014936 36015016 -153264538 - L1MD2 LINE L1 -13 6346 6272 547 154 103 68 chr6 36015016 36015133 -153264421 - FLAM_A SINE Alu -12 121 1 4181 223 68 8 chr6 36015133 36015227 -153264327 - L1MD2 LINE L1 -87 6272 6185 297 0 0 0 chr6 36015227 36015260 -153264294 + (TG)n Simple_repeat Simple_repeat 2 34 0 4181 223 68 8 chr6 36015260 36016111 -153263443 - L1MD2 LINE L1 -174 6185 5258 292 135 14 40 chr6 36016136 36016210 -153263344 - L1MEd LINE L1 -5011 1108 1037 1861 170 23 7 chr6 36016210 36016516 -153263038 - AluJb SINE Alu 0 312 2 377 210 20 120 chr6 36016520 36016720 -153262834 - L1MEd LINE L1 -5169 950 771 311 309 36 36 chr6 36016778 36016946 -153262608 - L1ME3A LINE L1 -5 6165 5998 440 295 77 13 chr6 36018477 36018633 -153260921 - MIR3 SINE MIR -4 204 39 394 293 102 24 chr6 36018791 36018958 -153260596 - MIR SINE MIR -58 204 25 2218 112 24 0 chr6 36018989 36019285 -153260269 - AluSx SINE Alu -9 303 1 660 156 50 78 chr6 36019585 36019726 -153259828 + MER20 DNA MER1_type 1 137 -82 582 248 29 0 chr6 36019735 36019872 -153259682 - MER96 DNA MER1_type? -34 141 1 452 164 0 0 chr6 36019873 36019946 -153259608 + MER20 DNA MER1_type 126 198 -21 679 227 159 0 chr6 36020159 36020322 -153259232 - MER5A DNA MER1_type 0 189 1 458 266 110 7 chr6 36020340 36020494 -153259060 + MER5A DNA MER1_type 14 183 -6 280 294 121 43 chr6 36020752 36020983 -153258571 + L2 LINE L2 2809 3057 -256 537 152 76 0 chr6 36020984 36021076 -153258478 + L2 LINE L2 3214 3312 -1 192 325 35 53 chr6 36021543 36021657 -153257897 + MER5A DNA MER1_type 51 162 -27 774 244 26 30 chr6 36021882 36022116 -153257438 + MIR SINE MIR 6 238 -24 419 268 177 35 chr6 36022286 36022596 -153256958 + L3 LINE CR1 313 666 -911 402 299 0 16 chr6 36022923 36023050 -153256504 + MIR SINE MIR 84 208 -54 1039 269 153 60 chr6 36023206 36023927 -153255627 + L3 LINE CR1 781 1568 -9 218 191 0 24 chr6 36024130 36024172 -153255382 + GA-rich Low_complexity Low_complexity 1 41 0 4294 120 16 26 chr6 36024195 36024400 -153255154 + L1PA16 LINE L1 5332 5538 -628 2043 110 31 17 chr6 36024400 36024691 -153254863 + AluSc SINE Alu 1 295 -14 4294 120 16 26 chr6 36024691 36025176 -153254378 + L1PA16 LINE L1 5538 6143 -23 1675 152 55 10 chr6 36025189 36025478 -153254076 + AluJo SINE Alu 9 310 -2 4350 156 42 4 chr6 36025493 36026249 -153253305 + L1MB8 LINE L1 5386 6170 -8 1544 111 72 102 chr6 36026515 36026616 -153252938 + L1MA9 LINE L1 5990 6093 -219 848 158 0 0 chr6 36026616 36026736 -153252818 + FLAM_A SINE Alu 1 120 -13 1544 111 72 102 chr6 36026736 36026967 -153252587 + L1MA9 LINE L1 6092 6312 0 518 158 42 58 chr6 36026970 36027090 -153252464 + L1MB2 LINE L1 6052 6169 -2 248 366 112 12 chr6 36027135 36027386 -153252168 + L1MC/D LINE L1 5533 5808 -2000 195 321 0 0 chr6 36029335 36029391 -153250163 + MIR SINE MIR 92 147 -61 619 286 42 5 chr6 36029718 36029907 -153249647 + MIR SINE MIR 11 206 -56 204 40 0 0 chr6 36030360 36030385 -153249169 + (T)n Simple_repeat Simple_repeat 1 25 0 263 365 12 12 chr6 36030834 36030919 -153248635 + MIR SINE MIR 4 88 -174 855 306 25 4 chr6 36032730 36032972 -153246582 + MIR SINE MIR 12 258 -4 2585 130 23 32 chr6 36033828 36034267 -153245287 + LTR23 LTR ERV1 1 435 -2 402 162 0 0 chr6 36034267 36034341 -153245213 + (CA)n Simple_repeat Simple_repeat 2 75 0 1389 247 39 63 chr6 36034486 36034554 -153245000 + MLT1J LTR MaLR 1 69 -442 2409 98 0 0 chr6 36034554 36034861 -153244693 + AluSx SINE Alu 1 307 -5 1389 247 39 63 chr6 36034861 36035254 -153244300 + MLT1J LTR MaLR 69 451 -60 854 136 111 40 chr6 36035256 36035455 -153244099 - LTR7 LTR ERV1 0 450 238 382 194 125 119 chr6 36035523 36035631 -153243923 + MIR SINE MIR 88 199 -63 730 109 143 25 chr6 36035631 36035750 -153243804 + FLAM_A SINE Alu 1 133 0 382 194 125 119 chr6 36035750 36035801 -153243753 + MIR SINE MIR 199 248 -14 521 317 41 23 chr6 36036897 36037118 -153242436 + L3 LINE CR1 690 914 -663 950 197 115 18 chr6 36037195 36037413 -153242141 - MIR SINE MIR -14 248 10 628 308 181 33 chr6 36037583 36037896 -153241658 + L3 LINE CR1 932 1324 -253 1710 102 18 0 chr6 36037896 36038122 -153241432 + MER30 DNA MER1_type 1 230 0 628 308 181 33 chr6 36038122 36038227 -153241327 + L3 LINE CR1 1324 1412 -165 288 257 222 35 chr6 36038292 36038436 -153241118 + MIR SINE MIR 3 173 -89 321 256 108 72 chr6 36038953 36039230 -153240324 + MER31-int LTR ERV1 3173 3459 -1477 2109 103 55 0 chr6 36039263 36039553 -153240001 - AluSx SINE Alu -6 306 1 189 0 0 0 chr6 36039749 36039770 -153239784 + (TG)n Simple_repeat Simple_repeat 2 22 0 892 192 84 0 chr6 36039862 36040029 -153239525 + MER58A DNA MER1_type 38 218 -6 22 35 0 0 chr6 36040054 36040083 -153239471 + AT_rich Low_complexity Low_complexity 1 29 0 2176 120 0 3 chr6 36040375 36040674 -153238880 - AluSg SINE Alu -12 298 1 21 81 0 0 chr6 36040879 36040916 -153238638 + AT_rich Low_complexity Low_complexity 1 37 0 2053 103 65 3 chr6 36041038 36041330 -153238224 + AluSg SINE Alu 1 310 0 278 167 0 0 chr6 36043574 36043616 -153235938 + Tigger6 DNA MER2_type 1 42 -1555 2699 187 12 0 chr6 36043617 36044136 -153235418 + L1P LINE L1 4261 4785 -1361 709 190 45 34 chr6 36044330 36044509 -153235045 - L1P LINE L1 -2808 3338 3158 * 2121 150 0 8 chr6 36044491 36044851 -153234703 - L1P LINE L1 -3633 2513 2157 769 242 28 47 chr6 36044952 36045163 -153234391 + MER58A DNA MER1_type 1 207 -17 2572 53 0 3 chr6 36047076 36047377 -153232177 - AluY SINE Alu -11 300 1 224 333 73 10 chr6 36048093 36048189 -153231365 + L2 LINE L2 3142 3243 -29 939 226 0 0 chr6 36048351 36048528 -153231026 + MER5B DNA MER1_type 1 177 -1 190 339 0 16 chr6 36048549 36048611 -153230943 - L2 LINE L2 -5 3267 3207 1013 164 58 88 chr6 36048769 36048995 -153230559 - MER20 DNA MER1_type 0 219 1 230 152 22 22 chr6 36049022 36049068 -153230486 + MER5A DNA MER1_type 142 187 -2 657 206 213 0 chr6 36049082 36049237 -153230317 + MER5A DNA MER1_type 1 188 -1 206 379 8 8 chr6 36049775 36049899 -153229655 + L2 LINE L2 2665 2788 -526 241 191 0 0 chr6 36050242 36050284 -153229270 + MER96B DNA MER1_type? 194 235 -182 3148 136 19 35 chr6 36050426 36050834 -153228720 + MER41E LTR ERV1 5 405 -107 2384 81 0 3 chr6 36050834 36051131 -153228423 - AluY SINE Alu -15 296 1 3148 136 19 35 chr6 36051131 36051238 -153228316 + MER41E LTR ERV1 405 512 0 702 320 26 76 chr6 36051297 36051757 -153227797 + L2 LINE L2 2836 3272 0 231 170 20 140 chr6 36052357 36052457 -153227097 - L1MC4 LINE L1 -1341 6701 6614 286 278 0 11 chr6 36052459 36052549 -153227005 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 371 138 23 146 chr6 36052579 36052622 -153226932 - MER58B DNA MER1_type -2079 341 294 2401 80 0 7 chr6 36052622 36052922 -153226632 + AluSg SINE Alu 5 302 -8 371 138 23 146 chr6 36052922 36052998 -153226556 - MER58B DNA MER1_type -2126 294 99 269 128 0 0 chr6 36052973 36053020 -153226534 - Alu SINE Alu -1 299 253 * 1208 228 188 73 chr6 36053340 36053789 -153225765 + L2 LINE L2 2334 2730 -583 1861 149 0 17 chr6 36053789 36054085 -153225469 - AluSx SINE Alu -21 291 1 1208 228 188 73 chr6 36054085 36054435 -153225119 + L2 LINE L2 2730 3295 -18 2382 98 3 13 chr6 36054435 36054750 -153224804 - AluSx SINE Alu 0 312 1 2035 125 4 0 chr6 36055107 36055388 -153224166 - AluSx SINE Alu -30 282 1 468 318 121 32 chr6 36055913 36056263 -153223291 + L1ME4a LINE L1 5473 5854 -267 356 201 187 30 chr6 36056321 36056455 -153223099 + L1ME4a LINE L1 5964 6118 -3 312 314 0 0 chr6 36056716 36056821 -153222733 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 36056882 36056903 -153222651 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 36057238 36057271 -153222283 + AT_rich Low_complexity Low_complexity 1 33 0 2159 93 0 36 chr6 36057616 36057918 -153221636 - AluSc SINE Alu -18 291 1 637 283 18 0 chr6 36057918 36058084 -153221470 - MER58A DNA MER1_type -54 170 2 375 23 0 0 chr6 36059295 36059339 -153220215 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1866 158 0 7 chr6 36059343 36059641 -153219913 - AluJo SINE Alu -16 296 1 216 0 0 0 chr6 36060648 36060672 -153218882 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 216 0 0 chr6 36060686 36060737 -153218817 + (TG)n Simple_repeat Simple_repeat 2 52 0 414 0 0 0 chr6 36060897 36060943 -153218611 + (CA)n Simple_repeat Simple_repeat 2 47 0 429 20 0 0 chr6 36061605 36061655 -153217899 + (TA)n Simple_repeat Simple_repeat 2 51 0 269 252 79 39 chr6 36061969 36062096 -153217458 - L1ME4a LINE L1 -31 6090 5959 395 303 52 58 chr6 36062163 36062318 -153217236 - L2 LINE L2 0 3272 3119 361 303 68 28 chr6 36063570 36063821 -153215733 + L2 LINE L2 2142 2402 -912 39 22 0 0 chr6 36063925 36063971 -153215583 + AT_rich Low_complexity Low_complexity 1 46 0 477 194 184 0 chr6 36064019 36064117 -153215437 + MLT1D LTR MaLR 3 118 -387 814 75 0 9 chr6 36064120 36064226 -153215328 - AluSg SINE Alu -205 105 1 826 176 110 47 chr6 36064226 36064577 -153214977 + MLT1D LTR MaLR 105 505 0 289 331 87 9 chr6 36064769 36064942 -153214612 - MIR SINE MIR -17 191 17 2358 157 45 17 chr6 36066021 36066441 -153213113 + MSTB1 LTR MaLR 1 432 0 300 339 37 95 chr6 36066654 36066896 -153212658 - L2 LINE L2 -3 3269 3042 29 0 0 0 chr6 36067106 36067135 -153212419 + AT_rich Low_complexity Low_complexity 1 29 0 224 232 0 14 chr6 36067161 36067230 -153212324 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 4681 182 20 12 chr6 36067611 36068825 -153210729 + L1MB7 LINE L1 4960 6184 0 486 262 35 99 chr6 36069294 36069607 -153209947 - MER102a DNA MER1_type -34 296 4 277 284 0 25 chr6 36069666 36069747 -153209807 - L3 LINE CR1 -10 1567 1489 358 310 23 23 chr6 36070033 36070162 -153209392 - MIR3 SINE MIR -13 195 67 2214 98 13 10 chr6 36071807 36072112 -153207442 - AluSx SINE Alu -2 310 5 1973 88 91 0 chr6 36072973 36073236 -153206318 + AluSx SINE Alu 6 292 -20 181 333 0 0 chr6 36073430 36073484 -153206070 + L2 LINE L2 3004 3057 -215 492 237 62 23 chr6 36074463 36074640 -153204914 - L1MC5 LINE L1 -492 7469 7286 708 241 83 60 chr6 36074763 36075132 -153204422 - L1MC4 LINE L1 -740 7221 6880 582 261 147 50 chr6 36075214 36075398 -153204156 + L1ME4a LINE L1 5548 5713 -408 2337 82 3 22 chr6 36075398 36075714 -153203840 + AluY SINE Alu 1 310 -1 582 261 147 50 chr6 36075714 36076034 -153203520 + L1ME4a LINE L1 5713 6101 -20 2272 110 0 7 chr6 36076761 36077069 -153202485 - AluSx SINE Alu -6 306 1 2972 106 10 2 chr6 36077296 36077703 -153201851 + L1PB1 LINE L1 5740 6149 -2 2103 166 32 6 chr6 36077983 36078396 -153201158 - L1ME1 LINE L1 -3 6163 5746 1761 151 17 3 chr6 36078448 36078740 -153200814 - AluJo SINE Alu 0 312 17 31 0 0 0 chr6 36083041 36083072 -153196482 + AT_rich Low_complexity Low_complexity 1 31 0 598 265 50 46 chr6 36084318 36084537 -153195017 + MIR SINE MIR 31 250 -12 298 186 0 119 chr6 36084561 36084679 -153194875 + MIR SINE MIR 109 212 -50 2221 85 0 4 chr6 36084917 36085198 -153194356 + AluSc SINE Alu 1 280 -29 1165 41 0 20 chr6 36085198 36085344 -153194210 + AluY SINE Alu 168 310 -1 1416 153 82 125 chr6 36086430 36086594 -153192960 + L1ME1 LINE L1 5779 5948 -218 2096 128 6 6 chr6 36086594 36086906 -153192648 - AluSp SINE Alu 0 313 2 1803 140 46 14 chr6 36086908 36087193 -153192361 - 7SLRNA srpRNA srpRNA -26 294 1 1416 153 82 125 chr6 36087193 36087425 -153192129 + L1ME1 LINE L1 5949 6161 -5 213 39 0 0 chr6 36087467 36087493 -153192061 + (TA)n Simple_repeat Simple_repeat 2 27 0 515 105 53 0 chr6 36087610 36087743 -153191811 + (TA)n Simple_repeat Simple_repeat 1 140 0 1502 167 7 19 chr6 36088862 36089132 -153190422 + AluJo SINE Alu 30 296 -16 2660 234 66 31 chr6 36089170 36090001 -153189553 - L1MC4a LINE L1 -840 6968 6109 23 33 0 0 chr6 36090001 36090031 -153189523 + AT_rich Low_complexity Low_complexity 1 30 0 1533 173 28 28 chr6 36092295 36092603 -153186951 - AluJo SINE Alu 0 308 1 181 189 0 27 chr6 36092974 36093011 -153186543 - L2 LINE L2 -34 3238 3203 * 599 289 14 24 chr6 36092981 36093192 -153186362 - MIR SINE MIR -34 228 20 21 0 0 0 chr6 36093549 36093570 -153185984 + AT_rich Low_complexity Low_complexity 1 21 0 557 226 222 29 chr6 36093791 36094066 -153185488 + L1MC4 LINE L1 7715 8042 0 476 294 5 64 chr6 36094140 36094160 -153185394 + MER117 DNA MER1_type 1 21 -176 3323 180 110 2 chr6 36094160 36094750 -153184804 + MLT1E1 LTR MaLR 1 654 0 476 294 5 64 chr6 36094750 36094916 -153184638 + MER117 DNA MER1_type 21 176 -21 2248 105 7 0 chr6 36096031 36096327 -153183227 - AluSq SINE Alu -15 298 1 656 282 40 67 chr6 36096446 36096496 -153183058 + Charlie8 DNA MER1_type 76 126 -2291 2310 99 7 0 chr6 36096496 36096799 -153182755 - AluSq SINE Alu -5 308 4 656 282 40 67 chr6 36096799 36097046 -153182508 + Charlie8 DNA MER1_type 126 365 -2052 435 233 0 0 chr6 36098335 36098425 -153181129 + L2 LINE L2 3224 3313 0 1531 185 73 0 chr6 36098737 36099024 -153180530 + AluJo SINE Alu 1 308 -4 226 300 136 0 chr6 36099553 36099716 -153179838 + MIR SINE MIR 4 192 -42 532 295 71 27 chr6 36099793 36100017 -153179537 + MIR SINE MIR 12 245 -17 338 221 47 47 chr6 36100028 36100114 -153179440 + MIR SINE MIR 68 153 -55 1372 155 9 0 chr6 36100137 36100350 -153179204 - MLT1D LTR MaLR 0 505 291 10316 175 16 68 chr6 36100593 36102907 -153176647 + L1PA16 LINE L1 2746 5178 -2426 1851 171 10 3 chr6 36102907 36103212 -153176342 - THE1B LTR MaLR 0 364 58 10316 175 16 68 chr6 36103212 36103364 -153176190 + L1PA16 LINE L1 5178 5336 -2268 1909 161 0 23 chr6 36103364 36103674 -153175880 + AluJo SINE Alu 3 305 -7 10316 175 16 68 chr6 36103674 36106092 -153173462 + L1PA16 LINE L1 5336 7604 0 211 362 14 43 chr6 36107395 36107533 -153172021 - MIR SINE MIR -11 251 118 776 233 116 11 chr6 36107568 36107757 -153171797 - MIR SINE MIR -51 211 3 247 331 69 8 chr6 36107868 36107998 -153171556 - MIR3 SINE MIR 0 208 71 197 344 102 6 chr6 36108245 36108402 -153171152 + L2 LINE L2 2358 2529 -785 3617 109 19 23 chr6 36108406 36109021 -153170533 - MER4B LTR ERV1 0 779 1 1713 219 110 81 chr6 36109243 36109963 -153169591 - LTR1B LTR ERV1 -85 741 1 382 320 62 6 chr6 36110478 36110656 -153168898 - MIR3 SINE MIR -1 207 20 274 280 57 117 chr6 36111052 36111140 -153168414 - L2 LINE L2 -50 3222 3130 1232 196 106 40 chr6 36111140 36111211 -153168343 - MER2 DNA MER2_type 0 344 279 2472 63 3 0 chr6 36111211 36111512 -153168042 + AluY SINE Alu 1 302 -9 1232 196 106 40 chr6 36111512 36111762 -153167792 - MER2 DNA MER2_type -65 279 2 274 280 57 117 chr6 36111762 36112059 -153167495 - L2 LINE L2 -142 3130 2860 263 270 0 0 chr6 36112613 36112676 -153166878 - MIR SINE MIR -10 252 190 515 211 200 0 chr6 36112778 36112873 -153166681 - MER81 DNA DNA 0 114 1 295 301 162 46 chr6 36113151 36113546 -153166008 + LTR67 LTR ERVL 105 545 -12 455 270 17 0 chr6 36113596 36113711 -153165843 + MER117 DNA MER1_type 47 163 -34 765 278 0 4 chr6 36114863 36115090 -153164464 + L1M4 LINE L1 4153 4378 -1768 1979 146 0 28 chr6 36115095 36115239 -153164315 + AluJo SINE Alu 1 148 -164 2568 62 0 3 chr6 36115239 36115544 -153164010 + AluY SINE Alu 1 304 -7 1979 146 0 28 chr6 36115544 36115720 -153163834 + AluJo SINE Alu 148 312 0 237 33 0 0 chr6 36115739 36115769 -153163785 + (CAA)n Simple_repeat Simple_repeat 1 30 0 498 338 57 9 chr6 36115934 36116173 -153163381 + MIR SINE MIR 10 259 -3 2050 180 189 2 chr6 36116590 36116984 -153162570 + MLT2B2 LTR ERVL 1 485 -30 479 71 47 0 chr6 36116984 36117069 -153162485 + (TCTA)n Simple_repeat Simple_repeat 3 91 0 2050 180 189 2 chr6 36117069 36117108 -153162446 + MLT2B2 LTR ERVL 485 515 0 742 254 106 35 chr6 36117280 36117563 -153161991 + LTR16A1 LTR ERVL 155 457 0 1155 189 91 4 chr6 36118070 36118206 -153161348 - L1MA9 LINE L1 -4 6308 6185 438 88 0 0 chr6 36118206 36118274 -153161280 + (TG)n Simple_repeat Simple_repeat 1 68 0 1155 189 91 4 chr6 36118274 36118391 -153161163 - L1MA9 LINE L1 -127 6185 6033 1243 307 139 6 chr6 36118923 36119441 -153160113 - MLT1K LTR MaLR 0 588 2 1688 108 14 0 chr6 36119668 36119890 -153159664 + AluSp SINE Alu 1 225 -88 200 278 137 41 chr6 36120206 36120360 -153159194 - MIR SINE MIR -68 140 5 522 267 23 0 chr6 36120556 36120687 -153158867 + MER94 DNA DNA 1 134 0 290 246 29 0 chr6 36120998 36121067 -153158487 + MIR SINE MIR 79 149 -113 * 639 309 32 0 chr6 36121063 36121251 -153158303 - MIR SINE MIR -1 261 68 2310 122 0 0 chr6 36121371 36121675 -153157879 - AluSx SINE Alu -8 304 1 554 277 185 5 chr6 36121982 36122177 -153157377 + MIR SINE MIR 32 261 -1 2413 86 0 3 chr6 36122198 36122502 -153157052 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr6 36122799 36122821 -153156733 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 0 42 chr6 36123161 36123232 -153156322 + MIR SINE MIR 85 152 -110 1086 65 0 0 chr6 36123689 36123828 -153155726 - AluY SINE Alu -11 300 162 180 0 0 0 chr6 36125584 36125604 -153153950 + (A)n Simple_repeat Simple_repeat 1 20 0 595 202 0 18 chr6 36126245 36126359 -153153195 + FLAM_A SINE Alu 4 115 -18 487 94 0 24 chr6 36126363 36126448 -153153106 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 213 237 0 0 chr6 36127821 36127880 -153151674 + (CA)n Simple_repeat Simple_repeat 2 60 0 15167 122 34 24 chr6 36127894 36129418 -153150136 - Tigger1 DNA MER2_type 0 2418 911 2578 89 12 3 chr6 36129418 36129755 -153149799 - L1PB1 LINE L1 0 6151 5812 6324 70 11 2 chr6 36129759 36130883 -153148671 - L1PA7 LINE L1 -3 6151 4955 15167 122 34 24 chr6 36130883 36131747 -153147807 - Tigger1 DNA MER2_type -1509 909 1 559 198 0 0 chr6 36132054 36132140 -153147414 - FRAM/FAM SINE Alu -98 78 1 1101 238 129 75 chr6 36132143 36132340 -153147214 - Charlie1a DNA MER1_type -2254 507 322 2475 75 0 0 chr6 36132340 36132647 -153146907 - AluY SINE Alu -2 309 3 1101 238 129 75 chr6 36132647 36132929 -153146625 - Charlie1a DNA MER1_type -2439 322 2 2291 100 13 0 chr6 36132932 36133231 -153146323 + AluSg SINE Alu 1 303 -7 1650 215 55 21 chr6 36133231 36133703 -153145851 - L1ME LINE L1 -350 5812 5297 1633 239 130 9 chr6 36133819 36134279 -153145275 - L1ME1 LINE L1 -19 6147 5632 2000 252 106 76 chr6 36134289 36134925 -153144629 - L1ME LINE L1 -982 5164 4549 2264 118 0 0 chr6 36134925 36135229 -153144325 + AluSx SINE Alu 1 304 -8 2000 252 106 76 chr6 36135229 36135841 -153143713 - L1ME LINE L1 -1597 4549 3861 1453 144 32 60 chr6 36135841 36136125 -153143429 - AluJb SINE Alu -34 278 3 2000 252 106 76 chr6 36136125 36136370 -153143184 - L1ME LINE L1 -2285 3861 3625 377 243 136 11 chr6 36136602 36136779 -153142775 - L2 LINE L2 -737 2577 2379 359 254 63 16 chr6 36136787 36136913 -153142641 - L2 LINE L2 -2305 1009 878 660 260 128 0 chr6 36137996 36138200 -153141354 - MIR SINE MIR -4 258 29 204 306 12 47 chr6 36138888 36138973 -153140581 - MIR3 SINE MIR -21 187 106 280 370 143 0 chr6 36139049 36139168 -153140386 - L2 LINE L2 -38 3234 3099 2080 110 7 3 chr6 36139264 36139554 -153140000 - AluSq SINE Alu -22 291 1 2058 121 4 0 chr6 36139911 36140192 -153139362 - AluSx SINE Alu -30 282 1 468 318 121 32 chr6 36140717 36141067 -153138487 + L1ME4a LINE L1 5473 5854 -267 356 201 187 30 chr6 36141125 36141259 -153138295 + L1ME4a LINE L1 5964 6118 -3 312 314 0 0 chr6 36141520 36141625 -153137929 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 36141686 36141707 -153137847 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 36142042 36142075 -153137479 + AT_rich Low_complexity Low_complexity 1 33 0 851 183 221 0 chr6 36142995 36143203 -153136351 + MIR SINE MIR 8 261 -1 295 299 131 19 chr6 36143374 36143481 -153136073 + MIR3 SINE MIR 15 133 -75 493 294 103 90 chr6 36143947 36144492 -153135062 - L2 LINE L2 -756 2558 2007 287 266 0 0 chr6 36145076 36145155 -153134399 + Charlie8 DNA MER1_type 74 152 -2265 313 268 24 39 chr6 36145377 36145504 -153134050 + HAL1 LINE L1 1464 1588 -919 236 255 57 78 chr6 36145547 36145739 -153133815 + HAL1 LINE L1 1761 1948 -559 23 54 0 0 chr6 36146035 36146072 -153133482 + AT_rich Low_complexity Low_complexity 1 37 0 913 275 29 8 chr6 36146141 36146385 -153133169 + MIR SINE MIR 10 258 -4 2243 107 3 0 chr6 36146488 36146786 -153132768 - AluSq SINE Alu -12 301 3 483 182 67 120 chr6 36147481 36147690 -153131864 + L1MC3 LINE L1 7581 7778 -7 330 132 0 0 chr6 36147690 36147743 -153131811 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 248 204 0 19 chr6 36149957 36150011 -153129543 + L2 LINE L2 3261 3313 0 270 0 0 0 chr6 36150365 36150395 -153129159 + (A)n Simple_repeat Simple_repeat 1 30 0 268 313 103 43 chr6 36150396 36150747 -153128807 + L2 LINE L2 2503 2874 -440 357 255 112 10 chr6 36150761 36150859 -153128695 + L2 LINE L2 3202 3309 -4 494 280 8 23 chr6 36151167 36151299 -153128255 + MER5A DNA MER1_type 60 189 0 534 269 141 22 chr6 36151513 36151656 -153127898 + MER112 DNA MER1_type 1 126 -134 225 94 0 0 chr6 36151656 36151688 -153127866 + (CTATT)n Simple_repeat Simple_repeat 4 35 0 534 269 141 22 chr6 36151688 36151771 -153127783 + MER112 DNA MER1_type 126 254 -6 270 373 16 10 chr6 36151788 36151981 -153127573 - L2 LINE L2 -652 2662 2469 2320 104 0 0 chr6 36152504 36152802 -153126752 + AluSg SINE Alu 1 298 -12 531 322 55 5 chr6 36153395 36153597 -153125957 - MIR SINE MIR -27 235 24 2416 78 0 23 chr6 36153692 36154000 -153125554 + AluSq SINE Alu 1 301 -12 1296 174 5 9 chr6 36154051 36154293 -153125261 - AluJo SINE Alu 0 307 67 2133 113 7 3 chr6 36154303 36154596 -153124958 - AluSx SINE Alu -18 294 1 198 291 93 23 chr6 36155163 36155249 -153124305 + MIR SINE MIR 97 188 -74 297 281 175 6 chr6 36155327 36155622 -153123932 + L2 LINE L2 2484 2826 -488 1925 143 0 37 chr6 36156674 36156995 -153122559 + AluSx SINE Alu 2 310 -2 216 0 0 0 chr6 36157118 36157142 -153122412 + (T)n Simple_repeat Simple_repeat 1 24 0 3226 202 31 85 chr6 36157142 36158432 -153121122 - L1ME1 LINE L1 -36 6130 4930 1869 122 0 44 chr6 36158432 36158726 -153120828 + AluY SINE Alu 1 281 -30 3226 202 31 85 chr6 36158726 36159183 -153120371 - L1ME1 LINE L1 -1236 4930 4450 3830 156 72 88 chr6 36160105 36160836 -153118718 - Charlie5 DNA MER1_type -1 2623 1915 1411 192 67 88 chr6 36160836 36161311 -153118243 + MLT1C LTR MaLR 1 465 -2 3830 156 72 88 chr6 36161311 36161688 -153117866 - Charlie5 DNA MER1_type -709 1915 1533 483 265 83 28 chr6 36161765 36161946 -153117608 + MIR SINE MIR 2 192 -70 492 268 98 7 chr6 36162786 36162939 -153116615 + MIR SINE MIR 10 176 -86 1090 269 67 53 chr6 36162948 36163439 -153116115 - L2 LINE L2 0 3313 2816 248 0 31 0 chr6 36168051 36168083 -153111471 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1351 172 26 127 chr6 36168568 36168934 -153110620 + MER58B DNA MER1_type 1 328 -13 1038 237 40 4 chr6 36169034 36169287 -153110267 - L1PB4 LINE L1 -1 6155 5894 1906 163 67 9 chr6 36171305 36171648 -153107906 + MER47B DNA MER2_type 56 418 0 232 204 37 0 chr6 36171790 36171844 -153107710 + L1ME3A LINE L1 6035 6090 -80 541 278 195 10 chr6 36172076 36172281 -153107273 + MIR SINE MIR 20 262 0 276 83 0 0 chr6 36172478 36172514 -153107040 - U2 snRNA snRNA -152 36 1 258 262 78 35 chr6 36173151 36173292 -153106262 + L1ME LINE L1 5409 5555 -566 204 40 0 0 chr6 36173350 36173375 -153106179 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 260 214 113 48 chr6 36173572 36173740 -153105814 - L1ME3A LINE L1 -232 5938 5760 743 199 0 0 chr6 36173841 36173972 -153105582 + FLAM_A SINE Alu 1 131 -2 290 296 120 11 chr6 36174017 36174291 -153105263 - L1ME3A LINE L1 -591 5587 5284 340 318 25 61 chr6 36174297 36174495 -153105059 - L1ME3A LINE L1 -869 5277 5087 385 242 11 0 chr6 36174917 36175012 -153104542 + L1MC4 LINE L1 2570 2665 -3481 3702 195 126 31 chr6 36175054 36175221 -153104333 + L1MC4 LINE L1 3807 3957 -2189 2344 91 7 0 chr6 36175221 36175518 -153104036 + AluSx SINE Alu 1 299 -13 3702 195 126 31 chr6 36175518 36176517 -153103037 + L1MC4 LINE L1 3957 5084 -1062 1693 172 0 4 chr6 36176546 36176813 -153102741 + AluJb SINE Alu 8 273 -39 343 189 116 0 chr6 36176920 36177015 -153102539 + L1MC4 LINE L1 5088 5193 -953 * 1540 223 147 18 chr6 36177012 36177563 -153101991 + L1MC4 LINE L1 5478 6099 -1943 * 1941 156 23 23 chr6 36177243 36177640 -153101914 + L1MB7 LINE L1 5767 6163 -21 216 261 0 0 chr6 36177644 36177709 -153101845 + GA-rich Low_complexity Low_complexity 2 66 0 30 0 0 0 chr6 36177812 36177842 -153101712 + AT_rich Low_complexity Low_complexity 1 30 0 502 299 51 56 chr6 36178222 36178456 -153101098 - MIR SINE MIR -29 233 1 1867 124 0 8 chr6 36179208 36179467 -153100087 - AluSq SINE Alu -56 257 1 314 272 98 54 chr6 36181093 36181277 -153098277 + L1MC4a LINE L1 5870 6061 -1747 5345 123 16 13 chr6 36181306 36182124 -153097430 + HSMAR2 DNA Mariner 263 1082 -220 2589 61 0 0 chr6 36182124 36182435 -153097119 + AluY SINE Alu 1 311 0 520 205 121 6 chr6 36182911 36183077 -153096477 - MER53 DNA DNA -4 185 1 840 272 15 42 chr6 36184124 36184385 -153095169 - MIR SINE MIR -4 258 5 509 186 8 25 chr6 36184654 36184772 -153094782 - MER53 DNA DNA -73 116 1 577 134 21 10 chr6 36184810 36184907 -153094647 + MER4A LTR ERV1 1 98 -566 1914 130 0 24 chr6 36184907 36185261 -153094293 + MER4A LTR ERV1 261 664 0 2470 76 104 51 chr6 36185264 36185921 -153093633 + MER4A-int LTR ERV1 1 807 -5791 315 49 0 0 chr6 36185922 36185963 -153093591 + (CA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 36185995 36186028 -153093526 + (A)n Simple_repeat Simple_repeat 1 33 0 267 75 0 50 chr6 36186046 36186086 -153093468 + LTR49 LTR ERV1 276 313 -282 7852 114 62 28 chr6 36186106 36187208 -153092346 + MER4A-int LTR ERV1 993 2056 -4542 2130 104 0 7 chr6 36187208 36187487 -153092067 + AluSq SINE Alu 1 277 -36 300 27 0 0 chr6 36187495 36187532 -153092022 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7852 114 62 28 chr6 36187532 36187873 -153091681 + MER4A-int LTR ERV1 2062 2495 -4103 1323 144 68 40 chr6 36187873 36188123 -153091431 - LTR8 LTR ERV1 -434 257 1 2780 142 79 85 chr6 36188123 36188568 -153090986 + MER4A-int LTR ERV1 2737 3183 -3493 2301 122 0 0 chr6 36188568 36188880 -153090674 + AluSx SINE Alu 1 312 0 2780 142 79 85 chr6 36188880 36189286 -153090268 + MER4A-int LTR ERV1 3183 4310 -2366 16325 97 56 19 chr6 36189289 36191951 -153087603 + MER4A-int LTR ERV1 3837 6596 -2 430 205 0 12 chr6 36191968 36192051 -153087503 + MER4A LTR ERV1 17 98 -566 1809 147 26 11 chr6 36192051 36192391 -153087163 + MER4A LTR ERV1 261 664 0 231 189 0 0 chr6 36192849 36192902 -153086652 + G-rich Low_complexity Low_complexity 4 56 0 258 160 0 0 chr6 36193056 36193106 -153086448 + (CA)n Simple_repeat Simple_repeat 2 51 0 462 49 0 0 chr6 36193187 36193248 -153086306 + (CA)n Simple_repeat Simple_repeat 1 61 0 22 56 0 0 chr6 36197517 36197553 -153082001 + AT_rich Low_complexity Low_complexity 1 36 0 488 219 66 70 chr6 36197640 36197762 -153081792 + MER96B DNA MER1_type? 191 313 -104 2286 112 0 0 chr6 36197762 36198067 -153081487 + AluSx SINE Alu 1 305 -7 488 219 66 70 chr6 36198067 36198172 -153081382 + MER96B DNA MER1_type? 313 417 0 270 208 0 0 chr6 36198850 36198903 -153080651 + L2 LINE L2 3261 3313 0 3355 220 30 53 chr6 36198976 36199234 -153080320 + L1M4 LINE L1 3039 3301 -2845 837 134 0 0 chr6 36199234 36199353 -153080201 + AluJo/FLAM SINE Alu 1 119 -183 1887 157 0 13 chr6 36199355 36199655 -153079899 + AluJb SINE Alu 4 299 -13 3355 220 30 53 chr6 36199655 36200389 -153079165 + L1M4 LINE L1 3302 4011 -2135 1107 260 3 24 chr6 36200389 36200528 -153079026 + AluJo SINE Alu 1 141 -171 2299 104 3 0 chr6 36200528 36200826 -153078728 + AluSx SINE Alu 2 300 -12 1107 260 3 24 chr6 36200826 36200974 -153078580 + AluJo SINE Alu 141 282 -30 207 88 0 0 chr6 36200977 36201011 -153078543 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 897 229 10 0 chr6 36201026 36201231 -153078323 + L1M4 LINE L1 4044 4250 -1896 * 1769 161 124 58 chr6 36201230 36201665 -153077889 + L1MC3 LINE L1 7134 7597 -188 1870 274 48 60 chr6 36201666 36201925 -153077629 + L1ME3A LINE L1 4132 4393 -1777 1935 89 19 0 chr6 36201925 36202184 -153077370 + AluSq SINE Alu 44 307 -6 1870 274 48 60 chr6 36202184 36203837 -153075717 + L1ME3A LINE L1 4393 6018 -152 3760 248 57 43 chr6 36203838 36205699 -153073855 + L1MB7 LINE L1 2969 5049 -1097 1585 223 108 34 chr6 36205704 36206206 -153073348 - LTR55 LTR ERV -3 545 7 569 117 0 0 chr6 36206207 36206284 -153073270 + MADE1 DNA Mariner 3 79 -1 3813 178 48 31 chr6 36206292 36206574 -153072980 + L1MB7 LINE L1 5046 5322 -862 863 172 0 8 chr6 36206574 36206708 -153072846 + FLAM_A SINE Alu 1 133 0 3813 178 48 31 chr6 36206708 36207535 -153072019 + L1MB7 LINE L1 5322 6184 0 259 197 145 105 chr6 36207542 36207694 -153071860 + L1ME3A LINE L1 6005 6162 -8 864 196 34 47 chr6 36208093 36208308 -153071246 - L1MD3 LINE L1 -9 7986 7770 186 43 0 0 chr6 36208308 36208331 -153071223 + (TG)n Simple_repeat Simple_repeat 2 24 0 864 196 34 47 chr6 36208331 36208384 -153071170 - L1MD3 LINE L1 -225 7770 6084 29 0 0 0 chr6 36209435 36209464 -153070090 + AT_rich Low_complexity Low_complexity 1 29 0 251 351 90 0 chr6 36209793 36209904 -153069650 - L2 LINE L2 -1 3271 3151 2708 147 166 42 chr6 36210377 36210927 -153068627 + LTR35 LTR ERV1 1 618 0 844 209 0 25 chr6 36211993 36212156 -153067398 + FRAM SINE Alu 4 162 -14 373 252 27 31 chr6 36212157 36212336 -153067218 - L1MD2 LINE L1 -167 6075 5894 835 301 173 30 chr6 36212428 36213035 -153066519 + L2 LINE L2 2001 2694 -620 502 190 60 0 chr6 36213049 36213149 -153066405 - L1MA2 LINE L1 0 6304 6199 3690 96 54 19 chr6 36213428 36214112 -153065442 + MER11A LTR ERVK 1 752 -484 43246 55 4 2 chr6 36214120 36220255 -153059299 + L1PA5 LINE L1 11 6152 -2 204 22 43 65 chr6 36220266 36220312 -153059242 + (TAA)n Simple_repeat Simple_repeat 1 45 0 377 113 0 84 chr6 36220315 36220386 -153059168 + MER11A LTR ERVK 912 976 -290 2291 78 6 58 chr6 36220395 36220742 -153058812 + MER11A LTR ERVK 937 1265 -1 418 256 135 46 chr6 36220751 36220867 -153058687 + L2 LINE L2 3008 3112 -201 2336 65 0 45 chr6 36220867 36221176 -153058378 - AluY SINE Alu -16 295 1 418 256 135 46 chr6 36221176 36221340 -153058214 + L2 LINE L2 3112 3313 0 411 21 0 0 chr6 36222661 36222709 -153056845 + (TG)n Simple_repeat Simple_repeat 2 49 0 180 125 0 0 chr6 36323984 36324016 -152955538 + (T)n Simple_repeat Simple_repeat 1 32 0 427 291 163 31 chr6 36324667 36324956 -152954598 - L2 LINE L2 -438 2876 2550 2504 73 0 6 chr6 36325058 36325371 -152954183 + AluY SINE Alu 1 311 0 228 122 143 0 chr6 36325383 36325432 -152954122 - MLT1J LTR MaLR -58 453 398 2648 55 0 3 chr6 36325622 36325930 -152953624 - AluY SINE Alu -4 307 1 892 216 226 5 chr6 36326037 36326423 -152953131 - MER90 LTR ERV1 -140 435 9 2123 120 0 13 chr6 36326527 36326826 -152952728 + AluSx SINE Alu 1 295 -17 289 296 22 59 chr6 36326870 36327005 -152952549 - L2 LINE L2 -1164 2150 2021 204 217 0 87 chr6 36327007 36327076 -152952478 - MIR SINE MIR -24 238 176 1730 63 5 5 chr6 36327102 36327308 -152952246 - AluSq SINE Alu -107 206 1 1072 269 106 44 chr6 36327316 36327714 -152951840 - L2 LINE L2 -3 3310 2938 1624 187 53 3 chr6 36327714 36327998 -152951556 + AluJo SINE Alu 1 298 -14 1072 269 106 44 chr6 36327998 36328145 -152951409 - L2 LINE L2 -375 2938 2802 2411 95 0 0 chr6 36328145 36328449 -152951105 - AluSg SINE Alu -6 304 1 1072 269 106 44 chr6 36328449 36328627 -152950927 - L2 LINE L2 -511 2802 2530 983 240 43 43 chr6 36328623 36328927 -152950627 + L2 LINE L2 2398 2701 -613 * 2449 87 0 6 chr6 36328953 36329264 -152950290 + AluSg SINE Alu 1 309 -1 816 167 0 15 chr6 36329264 36329396 -152950158 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 36329405 36329715 -152949839 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 36329715 36330264 -152949290 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 36330288 36330855 -152948699 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 36330871 36330924 -152948630 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 36330925 36331069 -152948485 + L1MA10 LINE L1 6215 6334 0 606 327 125 56 chr6 36332583 36332846 -152946708 - L2 LINE L2 -9 3263 3020 1759 170 11 0 chr6 36332846 36333123 -152946431 - AluJo SINE Alu -21 291 12 606 327 125 56 chr6 36333123 36334290 -152945264 - L2 LINE L2 -252 3020 1698 1399 154 75 72 chr6 36334464 36334770 -152944784 - AluJo SINE Alu -5 307 1 186 305 92 38 chr6 36335094 36335225 -152944329 - L2 LINE L2 -341 2972 2835 2340 99 7 0 chr6 36335396 36335700 -152943854 - AluSg SINE Alu -4 306 1 25 0 0 0 chr6 36335700 36335725 -152943829 + AT_rich Low_complexity Low_complexity 1 25 0 198 347 28 0 chr6 36336043 36336115 -152943439 + L2 LINE L2 2275 2348 -966 1830 182 7 19 chr6 36336119 36336426 -152943128 + AluJo SINE Alu 1 303 -9 210 318 57 66 chr6 36336468 36336608 -152942946 + L2 LINE L2 2341 2481 -833 2427 100 0 3 chr6 36336608 36336919 -152942635 - AluSx SINE Alu -2 310 1 210 318 57 66 chr6 36336919 36337102 -152942452 + L2 LINE L2 2481 2724 -590 602 310 175 28 chr6 36337141 36337563 -152941991 + L2 LINE L2 2830 3313 0 614 151 126 8 chr6 36337907 36338026 -152941528 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 36338215 36338244 -152941310 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2358 103 0 0 chr6 36339050 36339352 -152940202 + AluSg SINE Alu 1 302 -8 343 203 40 0 chr6 36339653 36339727 -152939827 + Tigger5 DNA MER2_type 1 77 -2246 336 203 0 0 chr6 36339727 36339786 -152939768 - Tigger5 DNA MER2_type -2 2321 2263 2530 83 0 0 chr6 36339786 36340086 -152939468 - AluSc SINE Alu -9 300 1 231 228 18 0 chr6 36340104 36340161 -152939393 + Tigger5 DNA MER2_type 2266 2323 0 2772 23 3 7 chr6 36340395 36340704 -152938850 + AluY SINE Alu 1 308 -3 1923 165 0 7 chr6 36340997 36341300 -152938254 - AluJb SINE Alu -6 306 6 808 232 79 21 chr6 36341301 36341491 -152938063 - MER58C DNA MER1_type -5 210 10 472 337 55 6 chr6 36341508 36341689 -152937865 + MIR3 SINE MIR 19 208 0 2352 109 0 0 chr6 36341728 36342030 -152937524 - AluY SINE Alu -7 304 3 2583 69 0 0 chr6 36342380 36342685 -152936869 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 36342728 36342773 -152936781 + GA-rich Low_complexity Low_complexity 3 47 0 2044 151 3 0 chr6 36343024 36343322 -152936232 - AluJb SINE Alu -13 299 1 844 153 0 8 chr6 36345095 36345219 -152934335 + FLAM_C SINE Alu 1 123 -20 1224 191 5 0 chr6 36345237 36345441 -152934113 + AluJb SINE Alu 85 289 -23 1878 110 92 0 chr6 36347322 36347595 -152931959 + AluSx SINE Alu 1 298 -14 592 151 0 21 chr6 36347598 36347691 -152931863 + AluJ/FLAM SINE Alu 2 92 -220 2073 109 39 3 chr6 36347691 36347975 -152931579 + AluSp SINE Alu 1 294 -19 1507 139 9 22 chr6 36347976 36348206 -152931348 + AluSg/x SINE Alu 80 306 -4 2332 89 10 0 chr6 36348221 36348523 -152931031 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 36348523 36348677 -152930877 - L1ME4a LINE L1 -108 6013 5834 2291 90 7 0 chr6 36348692 36348980 -152930574 - AluY SINE Alu -20 291 2 255 242 33 0 chr6 36349002 36349093 -152930461 - L1ME4a LINE L1 -525 5596 5503 1835 150 24 24 chr6 36349335 36349628 -152929926 - AluSx SINE Alu -19 293 1 2067 47 0 0 chr6 36349706 36349942 -152929612 + AluY SINE Alu 63 298 -13 2196 148 7 0 chr6 36451870 36452180 -152827374 - AluSx SINE Alu 0 312 1 1566 163 63 53 chr6 36452180 36452479 -152827075 - AluJo SINE Alu -9 303 1 2161 103 21 7 chr6 36453352 36453643 -152825911 + AluSg SINE Alu 1 295 -15 548 191 63 24 chr6 36453700 36453826 -152825728 + MIR SINE MIR 85 215 -47 208 51 26 26 chr6 36453841 36453880 -152825674 + (TA)n Simple_repeat Simple_repeat 2 40 0 2245 116 3 0 chr6 36453880 36454176 -152825378 - AluSx SINE Alu -12 300 1 876 165 0 0 chr6 36454392 36454525 -152825029 - FLAM_C SINE Alu 0 133 1 1531 173 4 8 chr6 36454793 36455048 -152824506 - AluJo SINE Alu -16 296 43 271 274 21 21 chr6 36455059 36455154 -152824400 - L2 LINE L2 -285 2987 2893 226 297 65 65 chr6 36455236 36455374 -152824180 - L2 LINE L2 -547 2767 2630 2312 105 0 0 chr6 36455535 36455831 -152823723 + AluSp SINE Alu 1 296 -17 2125 89 43 0 chr6 36456248 36456530 -152823024 + AluSq SINE Alu 1 294 -19 2361 84 16 13 chr6 36456534 36456844 -152822710 - AluSq SINE Alu -2 311 1 2237 101 0 10 chr6 36456880 36457044 -152822510 - AluSc SINE Alu -14 295 134 2437 74 0 0 chr6 36457044 36457340 -152822214 - AluY SINE Alu -14 297 2 2237 101 0 10 chr6 36457340 36457473 -152822081 - AluSc SINE Alu -175 134 1 476 144 50 178 chr6 36457898 36457999 -152821555 + MER5A DNA MER1_type 31 143 -46 2285 123 0 19 chr6 36457999 36458317 -152821237 - AluSx SINE Alu 0 312 1 476 144 50 178 chr6 36458317 36458329 -152821225 + MER5A DNA MER1_type 143 155 -34 2504 84 6 0 chr6 36458329 36458640 -152820914 - AluSp SINE Alu 0 313 1 476 144 50 178 chr6 36458640 36458705 -152820849 + MER5A DNA MER1_type 155 187 -2 2101 96 53 0 chr6 36458790 36459071 -152820483 - AluSq SINE Alu -17 296 1 904 201 12 117 chr6 36459141 36459390 -152820164 - AluJo SINE Alu -89 223 1 1889 132 46 0 chr6 36459425 36459705 -152819849 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 36459705 36459996 -152819558 - AluJo SINE Alu -7 305 10 196 233 82 55 chr6 36460007 36460080 -152819474 - MIR SINE MIR -160 102 28 2159 108 0 7 chr6 36460421 36460709 -152818845 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 36462814 36462834 -152816720 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2622 63 0 0 chr6 36465906 36466206 -152813348 + AluY SINE Alu 1 300 -11 830 93 0 0 chr6 36467469 36467587 -152811967 + L1PB1 LINE L1 6017 6134 -17 2041 156 0 10 chr6 36468311 36468619 -152810935 - AluJb SINE Alu -7 305 1 2363 100 0 0 chr6 36468629 36468929 -152810625 - AluY SINE Alu -11 300 1 1815 154 25 44 chr6 36471355 36471673 -152807881 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 36474387 36474408 -152805146 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 36475020 36475055 -152804499 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 36475557 36475578 -152803976 + AT_rich Low_complexity Low_complexity 1 21 0 338 91 45 76 chr6 36478580 36478646 -152800908 - U6 snRNA snRNA -43 64 1 2420 94 0 0 chr6 36479245 36479543 -152800011 - AluSc SINE Alu -11 298 1 2635 68 0 0 chr6 36480363 36480673 -152798881 + AluY SINE Alu 1 310 -1 2316 106 0 0 chr6 36480903 36481195 -152798359 - AluSg SINE Alu -18 292 1 2317 99 13 0 chr6 36481447 36481749 -152797805 + AluSq SINE Alu 1 306 -7 192 368 19 19 chr6 36481810 36481916 -152797638 + L3 LINE CR1 1450 1555 -22 2250 113 0 10 chr6 36481989 36482289 -152797265 + AluSx SINE Alu 1 297 -15 2316 104 0 7 chr6 36482610 36482917 -152796637 + AluSg1 SINE Alu 3 307 -2 1669 133 118 11 chr6 36483413 36483692 -152795862 + AluSg1 SINE Alu 1 309 0 792 234 0 0 chr6 36483912 36484066 -152795488 + MER58B DNA MER1_type 188 341 0 2131 114 52 0 chr6 36484097 36484386 -152795168 - AluSp SINE Alu -8 305 2 1989 125 0 28 chr6 36484434 36484722 -152794832 - AluSx SINE Alu -32 280 1 528 305 0 61 chr6 36485539 36485736 -152793818 - MER91A DNA MER1_type -11 185 1 2019 137 17 3 chr6 36486145 36486438 -152793116 + AluJb SINE Alu 1 297 -15 2211 131 0 0 chr6 36488932 36489229 -152790325 - AluSg SINE Alu -13 297 1 1925 153 10 0 chr6 36489229 36489523 -152790031 - AluJo SINE Alu -12 300 3 2102 143 0 3 chr6 36489565 36489866 -152789688 - AluSx SINE Alu -6 306 7 2497 59 7 0 chr6 36489883 36490171 -152789383 - AluY SINE Alu -21 290 1 2101 221 129 77 chr6 36490373 36490447 -152789107 - L2 LINE L2 -3 3310 3241 1532 131 0 18 chr6 36490447 36490676 -152788878 + AluJb SINE Alu 86 310 -2 2285 112 0 3 chr6 36490686 36490982 -152788572 + AluSx SINE Alu 6 300 -12 2152 138 0 3 chr6 36490983 36491295 -152788259 + AluSx SINE Alu 1 311 -1 2101 221 129 77 chr6 36491295 36491530 -152788024 - L2 LINE L2 -80 3233 3012 2369 48 41 14 chr6 36491530 36491821 -152787733 + AluY SINE Alu 1 299 -12 2134 139 7 0 chr6 36491825 36492127 -152787427 + AluJb SINE Alu 1 304 -8 2101 221 129 77 chr6 36492127 36492355 -152787199 - L2 LINE L2 -303 3010 2795 1496 118 164 11 chr6 36492355 36492617 -152786937 + AluSx SINE Alu 1 302 0 2187 120 10 0 chr6 36492622 36492914 -152786640 + AluSg SINE Alu 2 296 -14 2101 221 129 77 chr6 36492914 36492984 -152786570 - L2 LINE L2 -521 2792 2727 2048 116 20 30 chr6 36492984 36493285 -152786269 + AluSx SINE Alu 1 298 -14 2101 221 129 77 chr6 36493285 36493744 -152785810 - L2 LINE L2 -586 2727 2156 313 347 0 0 chr6 36494073 36494194 -152785360 + GA-rich Low_complexity Low_complexity 2 122 0 2255 102 0 3 chr6 36494584 36494878 -152784676 - AluSc SINE Alu -16 293 1 209 80 0 160 chr6 36494984 36495034 -152784520 + (A)n Simple_repeat Simple_repeat 1 42 0 2483 76 0 0 chr6 36495036 36495338 -152784216 + AluY SINE Alu 3 304 -7 1621 253 98 12 chr6 36495566 36495644 -152783910 - L2 LINE L2 -1193 2121 2051 2273 98 34 0 chr6 36495644 36495941 -152783613 + AluSx SINE Alu 1 307 -5 1621 253 98 12 chr6 36495941 36496436 -152783118 - L2 LINE L2 -1263 2051 1499 246 319 101 32 chr6 36496484 36496630 -152782924 - L2 LINE L2 -201 3071 2908 2512 77 0 6 chr6 36496630 36496943 -152782611 + AluY SINE Alu 1 311 0 246 319 101 32 chr6 36496943 36496984 -152782570 - L2 LINE L2 -364 2908 2871 2077 130 37 0 chr6 36497129 36497428 -152782126 - AluSx SINE Alu -2 310 1 389 280 223 0 chr6 36497498 36497673 -152781881 - MIR SINE MIR 0 262 49 852 114 0 0 chr6 36497695 36497809 -152781745 - AluJb SINE Alu -9 303 190 1565 123 0 0 chr6 36497811 36498023 -152781531 + AluSg/x SINE Alu 82 293 -17 2315 91 0 0 chr6 36498023 36498308 -152781246 + AluSc SINE Alu 1 285 -24 1559 92 0 0 chr6 36498309 36498504 -152781050 - AluY SINE Alu -116 195 1 582 87 11 43 chr6 36498504 36498596 -152780958 - AluJo SINE Alu -166 146 58 1946 115 86 0 chr6 36498628 36498897 -152780657 - AluSx SINE Alu -20 292 1 621 85 11 0 chr6 36498903 36498997 -152780557 - AluY SINE Alu -14 297 203 202 299 38 18 chr6 36499024 36499138 -152780416 + MIR SINE MIR 15 131 -77 2158 128 7 3 chr6 36499301 36499605 -152779949 - AluSx SINE Alu -5 307 3 771 200 70 0 chr6 36499607 36499792 -152779762 - L1M4 LINE L1 -748 5398 5201 2648 61 0 3 chr6 36499792 36500104 -152779450 - AluY SINE Alu 0 311 1 1589 113 18 51 chr6 36500104 36500179 -152779375 + Tigger3(Golem) DNA MER2_type 2764 2840 -188 1886 145 10 30 chr6 36500179 36500483 -152779071 + AluJb SINE Alu 1 298 -14 1589 113 18 51 chr6 36500483 36500681 -152778873 + Tigger3(Golem) DNA MER2_type 2840 3028 0 330 67 0 0 chr6 36501432 36501477 -152778077 + (CA)n Simple_repeat Simple_repeat 1 45 0 2488 98 0 0 chr6 36502694 36503001 -152776553 + AluSx SINE Alu 1 307 -5 203 333 0 13 chr6 36503763 36503841 -152775713 + CT-rich Low_complexity Low_complexity 3 79 0 2372 95 0 0 chr6 36505553 36505847 -152773707 - AluSc SINE Alu -15 294 1 198 0 0 0 chr6 36507063 36507085 -152772469 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2377 77 0 10 chr6 36508733 36509033 -152770521 - AluSg SINE Alu -13 297 1 2395 73 7 3 chr6 36509058 36509361 -152770193 + AluSx SINE Alu 1 304 -8 2455 87 0 0 chr6 36509416 36509716 -152769838 + AluSc SINE Alu 1 300 -9 2118 110 27 10 chr6 36510443 36510744 -152768810 + AluSx SINE Alu 1 306 -6 2319 82 4 0 chr6 36510838 36511119 -152768435 + AluSg SINE Alu 1 282 -28 1222 76 0 19 chr6 36511119 36511277 -152768277 + AluSg/x SINE Alu 156 310 -2 1987 112 7 0 chr6 36511839 36512117 -152767437 - AluSx SINE Alu -10 302 23 224 171 73 0 chr6 36512260 36512301 -152767253 + L2 LINE L2 3261 3304 -9 1655 162 30 0 chr6 36512303 36512574 -152766980 + AluSx SINE Alu 1 279 -33 342 0 0 0 chr6 36512574 36512612 -152766942 + (CA)n Simple_repeat Simple_repeat 1 38 0 500 306 106 0 chr6 36512741 36512901 -152766653 - MER5B DNA MER1_type 0 178 2 1181 198 136 29 chr6 36513756 36514029 -152765525 - AluJo SINE Alu 0 302 1 1955 90 24 7 chr6 36514198 36514488 -152765066 + AluSq SINE Alu 2 296 -17 225 225 326 0 chr6 36514501 36514590 -152764964 + L2 LINE L2 3193 3310 -3 1931 105 59 3 chr6 36514645 36514931 -152764623 + AluSg SINE Alu 1 302 -8 1062 253 117 31 chr6 36517773 36518424 -152761130 + L2 LINE L2 2612 3308 -5 1882 137 7 23 chr6 36518483 36518619 -152760935 + AluSx SINE Alu 2 139 -173 2162 100 3 3 chr6 36518619 36518920 -152760634 + AluSx SINE Alu 1 301 -11 1882 137 7 23 chr6 36518920 36519089 -152760465 + AluSx SINE Alu 139 302 -10 2005 133 0 0 chr6 36519251 36519545 -152760009 - AluSx SINE Alu -18 294 1 2171 98 0 20 chr6 36520954 36521259 -152758295 + AluSg SINE Alu 1 299 -11 1377 77 22 0 chr6 36521268 36521450 -152758104 - AluYa5 SINE Alu -20 291 106 2274 52 0 21 chr6 36521450 36521741 -152757813 - AluY SINE Alu -26 285 1 651 273 43 132 chr6 36522298 36522789 -152756765 - L3 LINE CR1 -3 1574 1128 1379 149 47 68 chr6 36523665 36523798 -152755756 + AluJo SINE Alu 1 135 -177 2143 110 7 3 chr6 36523798 36524098 -152755456 + AluSx SINE Alu 1 301 -11 2249 102 0 0 chr6 36524103 36524398 -152755156 + AluSc SINE Alu 1 295 -14 1379 149 47 68 chr6 36524398 36524554 -152755000 + AluJo SINE Alu 139 290 -22 2138 112 23 0 chr6 36524560 36524864 -152754690 + AluSx SINE Alu 1 311 -1 646 325 41 0 chr6 36526333 36526601 -152752953 + Tigger8 DNA MER2_type 178 456 -210 234 365 52 9 chr6 36526665 36526780 -152752774 + Tigger8 DNA MER2_type 547 666 0 2166 107 0 0 chr6 36526888 36527177 -152752377 + AluSq SINE Alu 5 293 -20 244 223 98 0 chr6 36527351 36527463 -152752091 + L1MC4 LINE L1 6976 7098 -944 * 505 296 103 97 chr6 36527459 36527659 -152751895 + L1MC4 LINE L1 6960 7157 -885 2334 70 7 0 chr6 36527659 36527957 -152751597 + AluY SINE Alu 1 300 -11 505 296 103 97 chr6 36527957 36528725 -152750829 + L1MC4 LINE L1 7157 8031 -11 2051 131 0 0 chr6 36528726 36529016 -152750538 + AluSx SINE Alu 1 290 -22 2139 107 3 19 chr6 36529179 36529497 -152750057 + AluSp SINE Alu 1 313 0 2016 118 6 25 chr6 36529499 36529814 -152749740 + AluSc SINE Alu 1 309 0 1792 110 121 4 chr6 36529833 36530097 -152749457 + AluSg SINE Alu 1 295 -5 1878 87 4 0 chr6 36531750 36531992 -152747562 - AluSg SINE Alu -65 245 3 1320 155 5 5 chr6 36532119 36532332 -152747222 - AluJb SINE Alu -99 213 1 1543 161 9 47 chr6 36532378 36532700 -152746854 + AluJb SINE Alu 1 310 -2 181 161 179 36 chr6 36532727 36532783 -152746771 + MER5A DNA MER1_type 126 189 0 316 235 66 102 chr6 36533529 36533695 -152745859 - L2 LINE L2 -3 3310 3151 2163 105 0 0 chr6 36533785 36534081 -152745473 + AluSx SINE Alu 1 296 -16 1516 138 51 55 chr6 36534288 36534477 -152745077 + AluJb SINE Alu 1 190 -122 2205 95 0 29 chr6 36534477 36534783 -152744771 - AluSg SINE Alu -13 297 1 1516 138 51 55 chr6 36534783 36534904 -152744650 + AluJb SINE Alu 190 310 -2 1986 120 3 29 chr6 36535049 36535358 -152744196 - AluSx SINE Alu -11 301 1 2398 71 0 0 chr6 36535873 36536169 -152743385 - AluY SINE Alu -15 296 1 303 245 179 0 chr6 36536445 36536551 -152743003 - L2 LINE L2 -2 3311 3187 1771 148 0 0 chr6 36537933 36538224 -152741330 + AluSx SINE Alu 20 310 0 377 288 57 57 chr6 36538225 36538258 -152741296 - MIR SINE MIR -71 191 159 2113 126 0 0 chr6 36538258 36538560 -152740994 - AluSx SINE Alu -10 302 1 1530 153 3 63 chr6 36538562 36538726 -152740828 - AluJo SINE Alu -18 294 155 2447 50 0 10 chr6 36538726 36539026 -152740528 - AluY SINE Alu -14 297 1 1530 153 3 63 chr6 36539026 36539162 -152740392 - AluJo SINE Alu -157 155 12 377 288 57 57 chr6 36539162 36539302 -152740252 - MIR SINE MIR -103 159 15 280 303 0 11 chr6 36539355 36539444 -152740110 + MIR3 SINE MIR 103 190 -18 907 131 15 0 chr6 36540896 36541026 -152738528 + FLAM_C SINE Alu 2 133 0 346 225 193 62 chr6 36541082 36541152 -152738402 + L2 LINE L2 2719 2778 -535 2222 80 3 10 chr6 36541152 36541452 -152738102 + AluSc SINE Alu 1 298 -11 346 225 193 62 chr6 36541452 36541813 -152737741 + L2 LINE L2 2778 3187 -126 2209 98 13 0 chr6 36541829 36542136 -152737418 + AluSx SINE Alu 1 311 -1 225 237 0 0 chr6 36545035 36545094 -152734460 + G-rich Low_complexity Low_complexity 2 60 0 201 121 0 0 chr6 36546058 36546091 -152733463 + (CTG)n Simple_repeat Simple_repeat 3 35 0 244 220 9 28 chr6 36547509 36547618 -152731936 + GA-rich Low_complexity Low_complexity 3 109 0 21 0 0 0 chr6 36547628 36547649 -152731905 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 36551376 36551403 -152728151 + GC_rich Low_complexity Low_complexity 1 27 0 277 206 41 14 chr6 36551923 36551996 -152727558 - MIR3 SINE MIR -28 180 106 2344 43 40 7 chr6 36552256 36552556 -152726998 + AluY SINE Alu 2 311 0 475 298 39 17 chr6 36552589 36552770 -152726784 + LTR33 LTR ERVL 329 513 -8 227 151 0 11 chr6 36552833 36553080 -152726474 + AluSx SINE Alu 1 301 -1 2158 98 3 0 chr6 36553228 36553523 -152726031 + AluSx SINE Alu 1 296 -16 2265 93 0 0 chr6 36553525 36553827 -152725727 + AluSg SINE Alu 1 302 -8 2332 87 6 0 chr6 36553829 36554140 -152725414 + AluSp SINE Alu 1 313 0 1447 155 65 0 chr6 36554431 36554676 -152724878 - AluJo SINE Alu -18 294 34 2192 87 0 14 chr6 36554697 36555014 -152724540 - AluSq SINE Alu 0 313 1 2286 162 15 96 chr6 36555019 36555110 -152724444 - L1MB5 LINE L1 -37 6137 6040 2020 113 10 0 chr6 36555110 36555401 -152724153 - AluSq SINE Alu -19 294 1 2286 162 15 96 chr6 36555401 36555818 -152723736 - L1MB5 LINE L1 -134 6040 5591 1726 157 54 27 chr6 36555818 36555972 -152723582 - AluJb SINE Alu 0 302 154 1989 114 3 29 chr6 36555972 36556137 -152723417 - AluSx SINE Alu -14 298 130 2094 104 0 0 chr6 36556137 36556443 -152723111 - AluSc SINE Alu 0 309 3 1920 92 57 7 chr6 36556447 36556730 -152722824 - AluSp SINE Alu -16 297 1 1989 114 3 29 chr6 36556730 36556865 -152722689 - AluSx SINE Alu -185 127 1 1726 157 54 27 chr6 36556865 36557004 -152722550 - AluJb SINE Alu -148 154 1 2286 162 15 96 chr6 36557004 36557087 -152722467 - L1MB5 LINE L1 -582 5592 5593 2038 121 0 16 chr6 36557877 36558190 -152721364 - AluSx SINE Alu -4 308 1 2274 89 0 3 chr6 36558246 36558549 -152721005 - AluSc SINE Alu -7 302 1 2167 110 0 0 chr6 36558549 36558841 -152720713 - AluSx SINE Alu -20 292 1 1615 162 21 0 chr6 36558841 36559125 -152720429 - AluJb SINE Alu -18 294 5 712 157 14 0 chr6 36559130 36559258 -152720296 - L1MB5 LINE L1 -567 5607 5467 1752 158 10 0 chr6 36559264 36559555 -152719999 + AluJb SINE Alu 1 294 -18 1466 118 0 0 chr6 36559555 36559758 -152719796 + AluSx SINE Alu 1 203 -109 1174 124 4 161 chr6 36559758 36560031 -152719523 + AluSg/x SINE Alu 67 296 -14 198 247 91 39 chr6 36560188 36560265 -152719289 - MIR3 SINE MIR -41 167 87 188 35 35 0 chr6 36560616 36560645 -152718909 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2064 59 37 75 chr6 36561138 36561460 -152718094 + AluY SINE Alu 1 310 -1 2230 83 7 0 chr6 36561477 36561766 -152717788 + AluSc SINE Alu 1 291 -18 706 295 63 35 chr6 36561766 36562258 -152717296 + L1MC5 LINE L1 7289 7794 -167 2471 62 19 10 chr6 36562326 36562634 -152716920 + AluY SINE Alu 1 311 0 2307 84 7 19 chr6 36566543 36566676 -152712878 + AluSg SINE Alu 3 136 -174 2591 52 3 3 chr6 36566676 36566982 -152712572 + AluY SINE Alu 1 306 -5 2307 84 7 19 chr6 36566982 36567156 -152712398 + AluSg SINE Alu 136 306 -4 1102 137 30 12 chr6 36567156 36567324 -152712230 + AluSg/x SINE Alu 132 302 -8 323 164 0 15 chr6 36568696 36568763 -152710791 + GA-rich Low_complexity Low_complexity 5 70 0 1772 166 19 35 chr6 36568910 36569224 -152710330 + AluJb SINE Alu 4 312 0 264 139 93 0 chr6 36569268 36569343 -152710211 + Alu SINE Alu 235 313 0 1507 153 84 8 chr6 36569391 36569652 -152709902 - AluJo SINE Alu -31 281 1 435 51 0 0 chr6 36569653 36569712 -152709842 - L1MA7 LINE L1 -461 5830 5772 2928 132 27 0 chr6 36569712 36570229 -152709325 - L1MA4 LINE L1 -1 6299 5769 988 198 18 0 chr6 36570229 36570396 -152709158 - AluSg/x SINE Alu -24 286 117 2246 129 0 0 chr6 36570421 36570724 -152708830 - AluSx SINE Alu -9 303 1 2308 118 3 0 chr6 36570728 36571032 -152708522 - AluSp SINE Alu -8 305 1 548 105 29 0 chr6 36571037 36571146 -152708408 - L1ME LINE L1 -381 5781 5669 589 237 8 0 chr6 36571182 36571313 -152708241 - AluJo SINE Alu -103 209 78 309 250 16 0 chr6 36571313 36571377 -152708177 + MER2 DNA MER2_type 281 345 0 1753 140 23 8 chr6 36571428 36571692 -152707862 + AluSx SINE Alu 1 268 -44 217 352 56 24 chr6 36573742 36573867 -152705687 + L2 LINE L2 3144 3272 0 736 142 8 0 chr6 36574701 36574828 -152704726 - L1MB3 LINE L1 -1 6182 6055 1855 179 3 16 chr6 36574839 36575151 -152704403 - AluJo SINE Alu -4 308 1 2036 136 0 7 chr6 36675682 36675976 -152603578 - AluSx SINE Alu -16 296 5 560 233 31 25 chr6 36676063 36676222 -152603332 - MIR SINE MIR 0 262 103 225 305 183 0 chr6 36676288 36676452 -152603102 + L2 LINE L2 2719 2912 -402 2210 89 41 0 chr6 36676561 36676853 -152602701 - AluSx SINE Alu -8 304 1 193 337 67 11 chr6 36677066 36677155 -152602399 - L2 LINE L2 -17 3296 3203 2467 81 0 31 chr6 36678330 36678653 -152600901 - AluSp SINE Alu 0 313 1 2433 68 3 0 chr6 36678660 36678953 -152600601 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 36679065 36679151 -152600403 - MIR SINE MIR -66 142 56 1073 62 8 0 chr6 36679305 36679435 -152600119 + AluY SINE Alu 2 132 -179 189 323 115 15 chr6 36679523 36679653 -152599901 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 36681750 36681797 -152597757 + GC_rich Low_complexity Low_complexity 1 47 0 1319 145 7 86 chr6 36682227 36682496 -152597058 + AluJo SINE Alu 40 287 -25 2465 78 3 0 chr6 36682504 36682812 -152596742 + AluSc SINE Alu 1 309 0 376 198 0 55 chr6 36684830 36684921 -152594633 + L2 LINE L2 3225 3310 -3 917 142 231 4 chr6 36685878 36686103 -152593451 - MER2 DNA MER2_type -36 309 34 409 207 49 0 chr6 36686194 36686276 -152593278 - FAM SINE Alu -78 97 12 279 216 68 45 chr6 36686391 36686479 -152593075 + MER5A DNA MER1_type 18 107 -82 1218 136 39 152 chr6 36686597 36686893 -152592661 + AluJb SINE Alu 3 260 -52 2121 121 13 10 chr6 36686893 36687198 -152592356 - AluSx SINE Alu -6 306 1 1218 136 39 152 chr6 36687198 36687231 -152592323 + AluJb SINE Alu 260 295 -17 952 209 0 0 chr6 36687569 36687727 -152591827 - FRAM SINE Alu -16 160 3 2161 125 7 13 chr6 36687740 36688044 -152591510 - AluSx SINE Alu -10 302 1 2282 125 3 0 chr6 36688805 36689109 -152590445 - AluSx SINE Alu -7 305 1 2371 88 10 0 chr6 36689119 36689416 -152590138 - AluY SINE Alu -9 302 3 2294 110 0 13 chr6 36689418 36689719 -152589835 - AluSx SINE Alu -15 297 1 720 252 67 21 chr6 36689729 36689967 -152589587 - MIR SINE MIR -10 252 4 214 317 48 0 chr6 36690166 36690270 -152589284 + MIR SINE MIR 151 259 -3 2339 99 3 3 chr6 36691543 36691847 -152587707 + AluSx SINE Alu 1 304 -8 2145 124 13 10 chr6 36692311 36692609 -152586945 - AluSx SINE Alu -13 299 1 1827 161 24 3 chr6 36692700 36692992 -152586562 - AluJb SINE Alu -14 298 1 1027 279 73 31 chr6 36693222 36693373 -152586181 - HAL1 LINE L1 -716 1791 1648 2177 142 0 0 chr6 36693373 36693676 -152585878 - AluSq SINE Alu -10 303 1 1027 279 73 31 chr6 36693676 36693799 -152585755 - HAL1 LINE L1 -859 1648 1532 2287 121 3 0 chr6 36693799 36694105 -152585449 + AluSq SINE Alu 1 307 -6 1910 171 23 3 chr6 36694109 36694413 -152585141 + AluJb SINE Alu 1 310 -2 1027 279 73 31 chr6 36694413 36694583 -152584971 - HAL1 LINE L1 -977 1530 1322 2296 98 3 0 chr6 36694650 36694947 -152584607 - AluY SINE Alu -13 298 1 1477 99 42 0 chr6 36695088 36695280 -152584274 - AluSg/x SINE Alu -40 272 73 1012 286 165 43 chr6 36695286 36695513 -152584041 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 36695513 36695533 -152584021 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 1012 286 165 43 chr6 36695533 36695673 -152583881 - HAL1 LINE L1 -1867 640 518 1819 137 3 81 chr6 36695673 36696008 -152583546 + AluSx SINE Alu 4 312 0 1012 286 165 43 chr6 36696008 36696289 -152583265 - HAL1 LINE L1 -1989 518 110 1942 182 0 3 chr6 36696309 36696622 -152582932 + AluJb SINE Alu 1 312 0 768 73 18 0 chr6 36696645 36696755 -152582799 - HY1 scRNA scRNA 0 112 1 518 16 0 0 chr6 36696784 36696848 -152582706 + AluY SINE Alu 230 293 -16 297 250 0 0 chr6 36696858 36696918 -152582636 - HAL1 LINE L1 -2438 69 10 2592 64 0 0 chr6 36696936 36697233 -152582321 - AluY SINE Alu -14 297 1 362 290 184 37 chr6 36697236 36697508 -152582046 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 36697522 36697548 -152582006 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 495 87 0 0 chr6 36697549 36697618 -152581936 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 1891 127 33 11 chr6 36697631 36697906 -152581648 - AluSx SINE Alu -31 281 1 712 330 47 20 chr6 36697939 36698281 -152581273 + L2 LINE L2 2959 3309 -4 205 368 21 0 chr6 36698344 36698439 -152581115 - MIR3 SINE MIR -41 167 71 398 228 154 86 chr6 36698465 36698627 -152580927 - MER5A DNA MER1_type -8 181 9 2886 188 64 14 chr6 36698786 36699407 -152580147 + MER82 DNA MER2_type 1 652 -1 607 301 68 0 chr6 36699504 36699667 -152579887 - MER91A DNA MER1_type 0 196 23 2404 112 0 0 chr6 36699711 36700016 -152579538 - AluSg SINE Alu -5 305 1 1792 160 17 0 chr6 36700016 36700310 -152579244 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 36701183 36701205 -152578349 + (T)n Simple_repeat Simple_repeat 1 22 0 1806 109 0 0 chr6 36701205 36701435 -152578119 - AluSq SINE Alu -83 230 1 599 183 1 7 chr6 36705173 36705187 -152574367 - L1PA16 LINE L1 -134 6022 6009 1918 85 0 12 chr6 36705187 36705435 -152574119 - AluSc SINE Alu -10 299 55 599 183 1 7 chr6 36705435 36705545 -152574009 - L1PA16 LINE L1 -147 6009 5903 445 81 0 0 chr6 36705545 36705607 -152573947 - AluSc SINE Alu -250 63 2 2217 132 3 0 chr6 36705811 36706166 -152573388 + L1PA16 LINE L1 5799 6154 -12 608 160 104 0 chr6 36706214 36706320 -152573234 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 36706320 36706343 -152573211 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 68 23 0 chr6 36706343 36706387 -152573167 + L1M1 LINE L1 5788 5832 -468 1682 139 73 7 chr6 36706727 36706890 -152572664 - AluJb SINE Alu -14 298 108 423 0 0 0 chr6 36706890 36706937 -152572617 + (TA)n Simple_repeat Simple_repeat 2 48 0 1682 139 73 7 chr6 36706937 36707047 -152572507 - AluJb SINE Alu -204 108 7 233 196 0 0 chr6 36707240 36707286 -152572268 + CT-rich Low_complexity Low_complexity 2 47 0 2436 112 0 0 chr6 36707342 36707654 -152571900 + AluSx SINE Alu 1 312 0 246 355 86 43 chr6 36707698 36707954 -152571600 - L2 LINE L2 -179 3093 2827 207 321 25 37 chr6 36708403 36708484 -152571070 + L2 LINE L2 3186 3265 -7 444 258 62 67 chr6 36709715 36709924 -152569630 + L2 LINE L2 3098 3305 -8 368 287 156 0 chr6 36710471 36710638 -152568916 + MIR SINE MIR 49 241 -21 1948 136 0 4 chr6 36710904 36711207 -152568347 - AluJo SINE Alu 0 316 15 21 0 0 0 chr6 36711220 36711241 -152568313 + AT_rich Low_complexity Low_complexity 1 21 0 2398 88 0 3 chr6 36711245 36711539 -152568015 + AluSg SINE Alu 1 293 -17 1956 81 58 8 chr6 36711539 36711799 -152567755 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 36712089 36712123 -152567431 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 369 256 22 0 chr6 36712242 36712332 -152567222 + L2 LINE L2 3182 3273 -40 205 324 15 0 chr6 36712570 36712638 -152566916 + MIR3 SINE MIR 132 200 -8 2435 75 10 0 chr6 36714047 36714341 -152565213 + AluSq SINE Alu 1 297 -16 302 252 25 50 chr6 36714457 36714478 -152565076 - L1MA10 LINE L1 0 6334 6314 2362 209 44 26 chr6 36714478 36714723 -152564831 - L1ME1 LINE L1 -8 6158 5919 2349 96 27 0 chr6 36714723 36715024 -152564530 + AluSq SINE Alu 1 309 -4 2362 209 44 26 chr6 36715024 36715347 -152564207 - L1ME1 LINE L1 -247 5919 5580 238 158 0 0 chr6 36715348 36715386 -152564168 + Alu SINE Alu 2 39 -264 1088 112 7 0 chr6 36715386 36715538 -152564016 - AluSx SINE Alu -159 153 1 1364 171 12 4 chr6 36715541 36715786 -152563768 + AluJb SINE Alu 50 296 -16 2135 90 30 7 chr6 36715790 36716089 -152563465 + AluSg SINE Alu 1 306 -4 2102 75 3 14 chr6 36716495 36716810 -152562744 - AluY SINE Alu 0 313 2 483 314 63 37 chr6 36716812 36717003 -152562551 - MIR SINE MIR -38 224 29 200 268 0 0 chr6 36717023 36717064 -152562490 + MIR SINE MIR 21 61 -201 2119 126 0 0 chr6 36717067 36717377 -152562177 - AluSg SINE Alu 0 310 1 1468 193 0 39 chr6 36717377 36717681 -152561873 - AluJo SINE Alu -18 294 3 277 345 146 0 chr6 36717686 36717851 -152561703 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 36718368 36718393 -152561161 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 971 199 24 15 chr6 36718419 36718450 -152561104 - MER3 DNA MER1_type 0 209 180 2104 115 0 7 chr6 36718450 36718619 -152560935 - AluSx SINE Alu -10 302 134 2252 74 0 7 chr6 36718619 36718936 -152560618 - AluY SINE Alu 0 311 2 2104 115 0 7 chr6 36718936 36719070 -152560484 - AluSx SINE Alu -178 134 1 971 199 24 15 chr6 36719070 36719244 -152560310 - MER3 DNA MER1_type -29 180 2 451 144 0 56 chr6 36720165 36720255 -152559299 - AluJ/FRAM SINE Alu -8 304 220 229 97 0 0 chr6 36720344 36720375 -152559179 - Alu SINE Alu -52 250 220 229 97 0 0 chr6 36720416 36720447 -152559107 - Alu SINE Alu -52 250 220 1313 175 20 4 chr6 36720512 36720758 -152558796 - AluJo SINE Alu -62 250 1 2283 79 7 0 chr6 36721188 36721492 -152558062 - AluSp SINE Alu -7 306 1 315 276 31 24 chr6 36721550 36721677 -152557877 - LTR67 LTR ERVL -17 540 413 294 299 41 10 chr6 36722123 36722220 -152557334 + MIR SINE MIR 156 255 -7 501 251 37 55 chr6 36722245 36722352 -152557202 - MER63A DNA MER1_type -1478 210 103 2736 157 130 73 chr6 36722352 36722452 -152557102 - MER39 LTR ERV1 0 707 614 1581 189 33 0 chr6 36722452 36722753 -152556801 - AluJb SINE Alu -1 311 1 2736 157 130 73 chr6 36722753 36722870 -152556684 - MER39 LTR ERV1 -93 614 505 2209 116 0 0 chr6 36722870 36723173 -152556381 + AluSx SINE Alu 1 303 -9 2736 157 130 73 chr6 36723173 36723205 -152556349 - MER39 LTR ERV1 -202 505 476 2400 77 3 0 chr6 36723205 36723515 -152556039 + AluSp SINE Alu 1 311 -2 2736 157 130 73 chr6 36723515 36723932 -152555622 - MER39 LTR ERV1 -231 476 1 501 251 37 55 chr6 36723932 36723987 -152555567 - MER63A DNA MER1_type -1585 103 51 729 301 152 24 chr6 36724086 36724468 -152555086 - MLT1J LTR MaLR -6 505 75 231 319 66 56 chr6 36724632 36724886 -152554668 - L2 LINE L2 -470 2844 2585 8610 64 5 7 chr6 36724886 36725960 -152553594 - MER11C LTR ERVK 0 1071 1 231 319 66 56 chr6 36725960 36725993 -152553561 - L2 LINE L2 -729 2585 2554 2122 123 0 0 chr6 36726123 36726431 -152553123 - AluSq SINE Alu -5 308 1 1531 159 0 58 chr6 36726445 36726753 -152552801 - AluJo SINE Alu -21 291 2 1146 226 117 40 chr6 36726759 36727161 -152552393 - LTR16A1 LTR ERVL 0 457 25 204 316 19 52 chr6 36727182 36727337 -152552217 - L2 LINE L2 -954 2360 2211 1529 175 4 18 chr6 36727343 36727677 -152551877 - AluJb SINE Alu 0 336 7 1011 236 232 42 chr6 36727909 36728221 -152551333 - MLT1G1 LTR MaLR 0 595 344 1651 149 23 46 chr6 36728221 36728523 -152551031 - AluJb SINE Alu -17 295 1 1011 236 232 42 chr6 36728523 36728710 -152550844 - MLT1G1 LTR MaLR -251 344 1 211 191 71 0 chr6 36728948 36728990 -152550564 - MIR SINE MIR -107 155 111 211 328 16 0 chr6 36728958 36729019 -152550535 - MIR SINE MIR -65 143 82 408 236 71 0 chr6 36730257 36730384 -152549170 - L1ME4a LINE L1 -9 6112 5977 238 297 121 66 chr6 36730396 36730743 -152548811 + L2 LINE L2 2909 3274 -39 374 303 76 0 chr6 36730819 36730938 -152548616 - L2 LINE L2 -8 3264 3137 572 284 60 22 chr6 36731070 36731253 -152548301 - MIR3 SINE MIR -3 205 16 443 314 62 47 chr6 36731255 36731583 -152547971 + L2 LINE L2 2449 2771 -543 1493 155 54 101 chr6 36731583 36731731 -152547823 - MLT1B LTR MaLR 0 390 237 1703 106 94 4 chr6 36731731 36732035 -152547519 - AluSc SINE Alu 0 309 1 2222 99 3 13 chr6 36732037 36732349 -152547205 - AluSx SINE Alu -3 309 1 1493 155 54 101 chr6 36732349 36732603 -152546951 - MLT1B LTR MaLR -154 236 4 443 314 62 47 chr6 36732603 36732675 -152546879 + L2 LINE L2 2771 2855 -459 430 295 75 75 chr6 36732786 36733027 -152546527 + L2 LINE L2 3007 3247 -25 2292 98 0 0 chr6 36733649 36733946 -152545608 + AluSq SINE Alu 1 297 -16 336 164 79 145 chr6 36733946 36734098 -152545456 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 36734119 36734142 -152545412 + AT_rich Low_complexity Low_complexity 1 23 0 1795 170 20 0 chr6 36734150 36734456 -152545098 + AluJb SINE Alu 1 312 0 1070 207 22 88 chr6 36734486 36734848 -152544706 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 36734848 36734874 -152544680 + AT_rich Low_complexity Low_complexity 1 26 0 568 122 0 0 chr6 36735837 36735919 -152543635 + AluS SINE Alu 5 86 -226 447 138 15 0 chr6 36735920 36735985 -152543569 - AluS SINE Alu -236 66 1 240 135 0 0 chr6 36735985 36736022 -152543532 - L1ME4a LINE L1 -187 5975 5939 2269 60 0 10 chr6 36736242 36736543 -152543011 - AluY SINE Alu -13 298 1 2086 113 3 3 chr6 36736543 36736844 -152542710 - AluSx SINE Alu -11 301 1 377 359 30 0 chr6 36736876 36737007 -152542547 + MIR SINE MIR 20 154 -108 1264 227 65 36 chr6 36737115 36737423 -152542131 + MLT1I LTR MaLR 93 409 0 1708 167 3 7 chr6 36737553 36737846 -152541708 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 36737914 36738034 -152541520 + A-rich Low_complexity Low_complexity 2 119 0 1971 137 0 0 chr6 36738045 36738388 -152541166 + AluSx SINE Alu 1 343 0 371 289 138 58 chr6 36738604 36739137 -152540417 - L2 LINE L2 -20 3252 2674 544 149 6 119 chr6 36739264 36739321 -152540233 - MER83 LTR ERV1 0 448 386 2244 88 0 16 chr6 36739321 36739626 -152539928 + AluSx SINE Alu 1 300 -12 544 149 6 119 chr6 36739626 36739794 -152539760 - MER83 LTR ERV1 -62 386 114 6990 153 23 16 chr6 36739796 36740916 -152538638 - MER83-int LTR ERV1 -3741 1139 12 1568 175 73 80 chr6 36740916 36741367 -152538187 - MER83 LTR ERV1 0 448 1 360 257 59 103 chr6 36741368 36741466 -152538088 - MIR SINE MIR -19 243 142 2176 103 0 0 chr6 36741466 36741758 -152537796 - AluSc SINE Alu -17 292 1 360 257 59 103 chr6 36741758 36741912 -152537642 - MIR SINE MIR -120 142 2 222 303 98 32 chr6 36741995 36742187 -152537367 - MIR SINE MIR -56 206 1 202 234 16 47 chr6 36743045 36743109 -152536445 - MIR SINE MIR -64 198 137 2298 135 41 117 chr6 36743112 36743352 -152536202 - L1MB3 LINE L1 -7 6176 5920 1562 112 0 0 chr6 36743352 36743575 -152535979 - AluSc SINE Alu -3 306 84 2298 135 41 117 chr6 36743575 36743602 -152535952 - L1MB3 LINE L1 -263 5920 5893 1784 134 51 0 chr6 36743602 36743877 -152535677 + AluSx SINE Alu 1 289 -23 2007 98 39 0 chr6 36743885 36744170 -152535384 + AluSx SINE Alu 1 296 -16 2298 135 41 117 chr6 36744170 36744207 -152535347 - L1MB3 LINE L1 -292 5891 4787 2190 98 0 3 chr6 36744207 36744502 -152535052 - AluSp SINE Alu -16 297 4 510 243 62 82 chr6 36744507 36744622 -152534932 - L1MD3 LINE L1 -2104 5891 5775 1778 160 0 20 chr6 36744622 36744928 -152534626 - AluJb SINE Alu -12 300 1 510 243 62 82 chr6 36744928 36745055 -152534499 - L1MD3 LINE L1 -2220 5775 5654 243 146 0 0 chr6 36745026 36745074 -152534480 - L1MB7 LINE L1 -7 6177 6130 * 528 106 0 75 chr6 36745078 36745172 -152534382 + AluSg/x SINE Alu 210 296 -16 4397 140 70 43 chr6 36745172 36745203 -152534351 - L1MB7 LINE L1 -47 6137 6108 2018 108 10 0 chr6 36745203 36745499 -152534055 - AluSg SINE Alu -10 300 2 4397 140 70 43 chr6 36745499 36746172 -152533382 - L1MB7 LINE L1 -76 6108 5455 2024 94 49 3 chr6 36746172 36746458 -152533096 - AluSx SINE Alu -13 299 1 4397 140 70 43 chr6 36746458 36746679 -152532875 - L1MB7 LINE L1 -729 5455 5242 872 133 0 15 chr6 36746679 36746814 -152532740 - FLAM_C SINE Alu 0 133 1 4397 140 70 43 chr6 36746814 36747089 -152532465 - L1MB7 LINE L1 -942 5242 4912 807 127 0 0 chr6 36747143 36747261 -152532293 + FLAM_C SINE Alu 2 119 -24 195 42 0 0 chr6 36747265 36747289 -152532265 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 305 297 0 50 chr6 36747290 36747391 -152532163 + L2 LINE L2 3176 3271 -1 261 244 47 12 chr6 36747390 36747476 -152532078 - MIR SINE MIR -126 136 48 * 2250 79 17 0 chr6 36747490 36747781 -152531773 - AluSc SINE Alu -13 296 1 2067 88 14 0 chr6 36747884 36748229 -152531325 + AluSx SINE Alu 1 312 0 254 260 328 11 chr6 36748921 36749098 -152530456 - MIR SINE MIR -10 252 20 510 201 85 39 chr6 36749237 36749440 -152530114 - MER63 DNA MER1_type 0 1061 1 2059 108 34 0 chr6 36749442 36749738 -152529816 - AluSx SINE Alu -6 306 1 644 171 70 23 chr6 36750208 36750337 -152529217 - AluJo SINE Alu -93 219 85 1760 164 17 0 chr6 36750470 36750762 -152528792 + AluJb SINE Alu 1 297 -15 478 346 23 68 chr6 36751726 36751857 -152527697 - L2 LINE L2 0 3272 3157 2247 82 0 10 chr6 36751857 36752163 -152527391 - AluSq SINE Alu -10 303 1 478 346 23 68 chr6 36752163 36752297 -152527257 - L2 LINE L2 -115 3157 3019 194 276 103 0 chr6 36752330 36752388 -152527166 + L2 LINE L2 3160 3223 -49 336 314 0 0 chr6 36752609 36752695 -152526859 + MIR SINE MIR 44 129 -133 27 0 0 0 chr6 36752785 36752812 -152526742 + AT_rich Low_complexity Low_complexity 1 27 0 2332 56 0 0 chr6 36752812 36753099 -152526455 - AluY SINE Alu -24 287 1 2211 88 0 0 chr6 36753406 36753715 -152525839 - AluSg SINE Alu 0 309 1 1792 161 0 13 chr6 36753723 36754022 -152525532 - AluJb SINE Alu -17 295 1 2114 84 61 3 chr6 36754522 36754818 -152524736 - AluSq SINE Alu 0 313 1 1071 202 116 27 chr6 36755364 36755622 -152523932 + AluJb SINE Alu 12 292 -20 183 42 0 0 chr6 36755895 36755919 -152523635 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 196 317 24 12 chr6 36756325 36756407 -152523147 + MIR SINE MIR 170 252 -10 2046 125 0 0 chr6 36757027 36757361 -152522193 - AluSx SINE Alu 0 334 1 1510 163 19 0 chr6 36757603 36757861 -152521693 - AluJo SINE Alu -49 263 1 246 121 0 0 chr6 36757907 36757940 -152521614 + Alu SINE Alu 1 33 -269 686 199 6 68 chr6 36757993 36758154 -152521400 - AluJb SINE Alu -144 168 18 993 241 17 61 chr6 36758173 36758580 -152520974 - L1MC5 LINE L1 -436 7525 7137 1376 226 74 61 chr6 36758631 36759157 -152520397 - L1MC5 LINE L1 -812 7149 6617 24 0 0 0 chr6 36759194 36759218 -152520336 + AT_rich Low_complexity Low_complexity 1 24 0 1660 191 84 56 chr6 36759426 36759855 -152519699 - LTR47B LTR ERVL -2 441 1 406 239 138 7 chr6 36760133 36760271 -152519283 - L1MC5 LINE L1 -1925 5883 5728 189 0 0 0 chr6 36760271 36760292 -152519262 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 656 152 62 18 chr6 36760305 36760417 -152519137 - AluJb SINE Alu -194 118 2 1071 263 53 19 chr6 36760418 36760741 -152518813 - L1MC5 LINE L1 -2072 5736 5403 249 57 0 0 chr6 36760742 36760777 -152518777 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1455 112 0 0 chr6 36760779 36760976 -152518578 - AluSg SINE Alu -113 197 1 302 254 117 56 chr6 36760978 36761175 -152518379 - L1MC5 LINE L1 -1005 5141 4933 2078 109 13 0 chr6 36761565 36761868 -152517686 - AluSx SINE Alu -5 307 1 199 281 199 1 chr6 36762108 36762278 -152517276 - MIR SINE MIR -28 234 22 230 281 18 0 chr6 36762496 36762553 -152517001 + L2 LINE L2 3256 3313 0 2001 114 17 3 chr6 36762741 36763040 -152516514 + AluSx SINE Alu 5 307 -5 350 322 0 0 chr6 36763047 36763137 -152516417 - L1MC4 LINE L1 -1339 6703 6614 329 344 0 0 chr6 36763065 36763155 -152516399 + L1MC4 LINE L1 6614 6703 -1339 * 1980 132 0 16 chr6 36763515 36763825 -152515729 + AluSq SINE Alu 1 305 -8 2225 97 0 6 chr6 36763825 36764135 -152515419 + AluSc SINE Alu 1 309 0 2062 108 0 11 chr6 36764152 36764465 -152515089 + AluSx SINE Alu 1 310 0 2787 160 125 39 chr6 36764974 36765544 -152514010 - MER21A LTR ERV1 0 931 313 1459 144 33 52 chr6 36865544 36865904 -152413650 - MER21A LTR ERV1 -240 467 1 2076 121 10 3 chr6 36866006 36866295 -152413259 - AluSx SINE Alu -21 291 1 1567 150 72 49 chr6 36866427 36866560 -152412994 - MER39 LTR ERV1 -16 691 563 2254 131 0 6 chr6 36866560 36866874 -152412680 + AluSx SINE Alu 1 312 0 1567 150 72 49 chr6 36866874 36867086 -152412468 - MER39 LTR ERV1 -144 563 338 1382 153 5 5 chr6 36867086 36867309 -152412245 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 36867310 36867409 -152412145 - LTR30 LTR ERV1 -80 642 544 4004 158 46 49 chr6 36867410 36868374 -152411180 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 36868374 36868690 -152410864 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 36868728 36869033 -152410521 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 36869299 36869605 -152409949 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 36869616 36869658 -152409896 + Charlie8 DNA MER1_type 87 129 -2288 968 208 56 5 chr6 36869667 36869864 -152409690 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 36870324 36870622 -152408932 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 36871072 36871594 -152407960 + MER74A LTR ERVL 4 545 -13 1862 155 3 33 chr6 36871676 36872002 -152407552 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 36872016 36872293 -152407261 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 36872330 36872496 -152407058 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 36872529 36872726 -152406828 - MLT1J LTR MaLR -215 296 113 2390 78 14 0 chr6 36872883 36873177 -152406377 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 36873218 36873526 -152406028 - AluSx SINE Alu -4 308 3 227 31 31 0 chr6 36873771 36873803 -152405751 + (TG)n Simple_repeat Simple_repeat 1 33 0 1072 187 10 30 chr6 36873981 36874179 -152405375 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 36874179 36874476 -152405078 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 36874959 36875194 -152404360 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 36875212 36875515 -152404039 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 36875515 36875582 -152403972 - AluSc SINE Alu -7 292 226 7157 120 128 96 chr6 36875585 36877229 -152402325 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 36877229 36877459 -152402095 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 36877654 36877709 -152401845 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 36877977 36878222 -152401332 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 36878470 36878762 -152400792 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 36879427 36879727 -152399827 - AluSc SINE Alu -9 300 1 277 324 189 22 chr6 36880152 36880581 -152398973 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 36880581 36881005 -152398549 + LTR16A LTR ERVL 2 450 0 277 324 189 22 chr6 36881005 36881063 -152398491 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 36881071 36881153 -152398401 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 36881262 36881434 -152398120 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 36881434 36881733 -152397821 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 36881733 36881860 -152397694 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 36881861 36882059 -152397495 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 36883155 36883242 -152396312 - L2 LINE L2 0 3272 3160 2426 98 0 0 chr6 36883413 36883719 -152395835 + AluSg SINE Alu 1 306 -4 456 123 0 0 chr6 36883751 36883824 -152395730 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 36883826 36883892 -152395662 - Alu SINE Alu -1 300 235 1902 172 3 3 chr6 36884174 36884476 -152395078 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 36884549 36884597 -152394957 + MER57A LTR ERV1 292 339 -64 1337 111 0 0 chr6 36884604 36884785 -152394769 + AluSg/x SINE Alu 119 299 -11 216 245 0 75 chr6 36884968 36885021 -152394533 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 36885101 36885194 -152394360 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 36885561 36885845 -152393709 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 36886173 36886345 -152393209 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 36886420 36886737 -152392817 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 36886874 36887003 -152392551 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 36889978 36890045 -152389509 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 36890055 36890267 -152389287 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 36891416 36891581 -152387973 + FRAM SINE Alu 1 165 -1 1519 251 53 2 chr6 36892118 36892536 -152387018 + L1ME3A LINE L1 5724 6162 -8 1777 96 114 36 chr6 36892558 36892838 -152386716 + AluSx SINE Alu 1 302 -10 1380 201 138 39 chr6 36892991 36893433 -152386121 + MLT2B1 LTR ERVL 5 490 -30 201 65 22 43 chr6 36893446 36893492 -152386062 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 2172 146 0 0 chr6 36893496 36893805 -152385749 - AluJo SINE Alu -3 309 1 1035 214 124 105 chr6 36894107 36894324 -152385230 + MLT1H1 LTR MaLR 5 217 -338 2412 95 0 3 chr6 36894324 36894628 -152384926 + AluSg SINE Alu 1 303 -7 1035 214 124 105 chr6 36894628 36894640 -152384914 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 36894640 36894909 -152384645 + AluJo SINE Alu 1 279 -33 1035 214 124 105 chr6 36894909 36895219 -152384335 + MLT1H1 LTR MaLR 227 555 0 1734 169 46 54 chr6 36895880 36896188 -152383366 + MLT1A2 LTR MaLR 3 309 -65 1803 155 3 42 chr6 36896188 36896332 -152383222 + AluJb SINE Alu 1 128 -184 2363 93 0 3 chr6 36896332 36896632 -152382922 + AluSx SINE Alu 6 304 -8 1803 155 3 42 chr6 36896632 36896796 -152382758 + AluJb SINE Alu 128 297 -15 1734 169 46 54 chr6 36896796 36896859 -152382695 + MLT1A2 LTR MaLR 309 371 -3 1674 148 50 14 chr6 36897390 36897668 -152381886 - AluJo SINE Alu -24 288 1 1528 271 53 27 chr6 36897743 36898344 -152381210 - L1MC4a LINE L1 -1733 6075 5459 32 57 0 0 chr6 36898690 36898743 -152380811 + AT_rich Low_complexity Low_complexity 1 53 0 2336 108 0 3 chr6 36898950 36899257 -152380297 - AluSc SINE Alu -3 306 1 465 215 51 82 chr6 36899418 36899613 -152379941 - MLT1J LTR MaLR -33 478 290 2409 99 0 0 chr6 36899650 36899952 -152379602 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 36900471 36900496 -152379058 - MER72 LTR ERV1 0 722 698 1400 172 122 7 chr6 36900496 36900618 -152378936 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 36900618 36900644 -152378910 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1400 172 122 7 chr6 36900644 36900800 -152378754 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 36900800 36900847 -152378707 - MER72 LTR ERV1 -24 698 653 649 146 10 0 chr6 36900850 36900946 -152378608 + AluJ/FLAM SINE Alu 3 99 -213 1641 127 15 42 chr6 36900947 36901295 -152378259 - MER61C LTR ERV1 0 434 1 1072 165 0 0 chr6 36901332 36901502 -152378052 + FRAM SINE Alu 1 170 -6 975 262 118 3 chr6 36901555 36901902 -152377652 - LTR16C LTR ERVL 0 491 105 4300 155 61 24 chr6 36902330 36902894 -152376660 + MER49 LTR ERV1 1 607 -316 2417 76 6 19 chr6 36902894 36903208 -152376346 - AluY SINE Alu -1 310 1 4300 155 61 24 chr6 36903208 36903476 -152376078 + MER49 LTR ERV1 607 864 -59 1380 159 0 14 chr6 36903476 36903696 -152375858 - AluJb SINE Alu -1 311 95 1489 131 20 31 chr6 36903696 36904038 -152375516 + MER61C LTR ERV1 3 434 0 205 222 10 61 chr6 36904272 36904371 -152375183 + GA-rich Low_complexity Low_complexity 2 95 0 180 0 0 0 chr6 36905352 36905372 -152374182 + (T)n Simple_repeat Simple_repeat 1 20 0 4169 122 44 2 chr6 36905390 36906004 -152373550 - LTR9B LTR ERV1 0 644 5 1722 143 8 11 chr6 36906009 36906275 -152373279 - AluSq SINE Alu -48 265 1 675 205 0 0 chr6 36906424 36906541 -152373013 + FLAM_C SINE Alu 1 117 -26 2412 99 0 3 chr6 36906545 36906857 -152372697 - AluSq SINE Alu 0 313 3 21 0 0 0 chr6 36906883 36906904 -152372650 + AT_rich Low_complexity Low_complexity 1 21 0 2356 106 0 3 chr6 36906904 36907216 -152372338 + AluSx SINE Alu 1 311 -1 801 96 0 0 chr6 36907291 36907395 -152372159 + AluSg/x SINE Alu 196 299 -10 1426 144 31 126 chr6 36907668 36907994 -152371560 + AluJo SINE Alu 1 295 -17 1391 236 87 74 chr6 36908155 36908791 -152370763 - MER21B LTR ERV1 -192 671 28 29 94 0 0 chr6 36909365 36909450 -152370104 + AT_rich Low_complexity Low_complexity 1 85 0 258 299 45 23 chr6 36909937 36910114 -152369440 - L1MC5 LINE L1 -52 7909 7729 2416 108 19 17 chr6 36910586 36910948 -152368606 + THE1B LTR MaLR 1 363 -1 2011 140 6 32 chr6 36910948 36911262 -152368292 + AluSx SINE Alu 1 306 -6 10175 100 43 43 chr6 36911275 36912854 -152366700 + THE1B-int LTR MaLR 2 1580 0 2059 114 7 7 chr6 36912854 36913160 -152366394 + THE1B LTR MaLR 1 306 -58 620 150 9 0 chr6 36913161 36913274 -152366280 + CT-rich Low_complexity Low_complexity 3 116 0 2285 109 23 0 chr6 36913274 36913578 -152365976 - AluSx SINE Alu -1 311 1 386 138 0 0 chr6 36913583 36913641 -152365913 + THE1B LTR MaLR 371 428 0 806 238 9 53 chr6 36913666 36913953 -152365601 + L1ME1 LINE L1 5872 6291 -21 2582 64 0 3 chr6 36913976 36914287 -152365267 + AluY SINE Alu 1 310 -1 3993 138 19 17 chr6 36914449 36914638 -152364916 - MER41B LTR ERV1 -2 633 446 2068 118 51 0 chr6 36914638 36914934 -152364620 - AluSx SINE Alu -1 311 1 3993 138 19 17 chr6 36914934 36915376 -152364178 - MER41B LTR ERV1 -189 446 1 1101 278 80 17 chr6 36915794 36916269 -152363285 + MLT1J LTR MaLR 1 505 -6 286 306 126 9 chr6 36917904 36918015 -152361539 - L2 LINE L2 0 3272 3149 1868 161 7 0 chr6 36918401 36918711 -152360843 + AluJb SINE Alu 1 312 0 768 246 77 0 chr6 36918810 36919017 -152360537 + MLT1J LTR MaLR 1 223 -288 2083 133 0 0 chr6 36919052 36919354 -152360200 + AluSx SINE Alu 1 302 -10 2171 141 42 33 chr6 36919370 36919731 -152359823 - THE1B LTR MaLR 0 364 1 10226 85 26 82 chr6 36919731 36920784 -152358770 - THE1B-int LTR MaLR 0 1580 469 926 87 63 0 chr6 36920784 36920911 -152358643 + AluJb SINE Alu 1 135 -177 2155 110 3 13 chr6 36920911 36921220 -152358334 + AluSx SINE Alu 1 306 -6 10226 85 26 82 chr6 36921220 36921713 -152357841 - THE1B-int LTR MaLR -1109 471 1 2229 133 33 41 chr6 36921713 36922080 -152357474 - THE1B LTR MaLR 0 364 1 1373 193 4 23 chr6 36922083 36922347 -152357207 + AluJo SINE Alu 24 282 -30 2122 123 7 0 chr6 36923184 36923485 -152356069 - AluSg SINE Alu -7 303 1 1706 125 110 115 chr6 36923592 36923754 -152355800 + MSTA LTR MaLR 22 183 -245 2198 94 13 0 chr6 36923754 36924061 -152355493 + AluSp SINE Alu 1 311 -2 1706 125 110 115 chr6 36924061 36924307 -152355247 + MSTA LTR MaLR 183 428 0 969 115 4 183 chr6 36924698 36924933 -152354621 + 7SK RNA RNA 1 193 0 2708 150 21 2 chr6 36925601 36926021 -152353533 - MSTA LTR MaLR 0 428 1 1473 195 34 0 chr6 36926164 36926462 -152353092 + AluJo SINE Alu 1 308 -4 4902 115 48 12 chr6 36926597 36927407 -152352147 - Tigger1 DNA MER2_type -1 2417 1579 2275 100 0 22 chr6 36927407 36927727 -152351827 - AluSq SINE Alu 0 313 1 1026 91 0 0 chr6 36927729 36927861 -152351693 - AluSq/x SINE Alu -181 132 1 5064 98 1 12 chr6 36927861 36928613 -152350941 - Tigger1 DNA MER2_type -829 1589 846 237 108 0 0 chr6 36928698 36928735 -152350819 + (TG)n Simple_repeat Simple_repeat 2 38 0 404 115 0 39 chr6 36928746 36928824 -152350730 + MLT1F LTR MaLR 468 542 0 4569 171 56 67 chr6 36929248 36930330 -152349224 + MER11C LTR ERVK 1 1071 0 1084 229 76 38 chr6 36930428 36930448 -152349106 - MLT1I LTR MaLR 0 409 391 2239 97 0 3 chr6 36930448 36930747 -152348807 + AluSc SINE Alu 1 298 -11 1084 229 76 38 chr6 36930747 36930773 -152348781 - MLT1I LTR MaLR -18 391 367 1998 147 0 0 chr6 36930773 36931072 -152348482 - AluSx SINE Alu -13 299 1 1084 229 76 38 chr6 36931072 36931365 -152348189 - MLT1I LTR MaLR -42 367 56 309 180 22 11 chr6 36931365 36931454 -152348100 - L1MDa LINE L1 -4456 2084 1995 753 193 0 0 chr6 36931454 36931573 -152347981 + AluJb SINE Alu 2 120 -192 189 107 0 0 chr6 36931575 36931603 -152347951 + (CA)n Simple_repeat Simple_repeat 1 28 0 452 17 33 0 chr6 36931605 36931665 -152347889 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 5498 196 70 40 chr6 36931666 36932624 -152346930 - L1MDa LINE L1 -4537 2003 1075 1659 185 3 10 chr6 36932624 36932916 -152346638 - AluJb SINE Alu -22 290 1 5498 196 70 40 chr6 36932916 36932977 -152346577 - L1MDa LINE L1 -5465 1075 1017 324 0 0 0 chr6 36932977 36933013 -152346541 + (TG)n Simple_repeat Simple_repeat 2 37 0 5498 196 70 40 chr6 36933013 36933378 -152346176 - L1MDa LINE L1 -5523 1017 576 1709 148 42 61 chr6 36933410 36933787 -152345767 + LTR8A LTR ERV1 358 727 0 644 246 59 27 chr6 36933789 36933976 -152345578 + LTR16C LTR ERVL 299 491 0 715 242 39 13 chr6 36934026 36934212 -152345342 - AluJ SINE Alu 0 302 137 833 142 0 43 chr6 36934212 36934322 -152345232 - AluJ SINE Alu -176 136 32 4111 99 7 14 chr6 36934322 36934645 -152344909 + MER41A LTR ERV1 1 321 -233 2040 115 0 10 chr6 36934645 36934964 -152344590 + AluSq SINE Alu 1 316 0 4111 99 7 14 chr6 36934964 36935197 -152344357 + MER41A LTR ERV1 321 554 0 833 142 0 43 chr6 36935197 36935227 -152344327 - AluJ SINE Alu -280 32 2 2200 81 0 3 chr6 36935228 36935525 -152344029 - AluY SINE Alu -15 296 1 3276 134 81 29 chr6 36935671 36936253 -152343301 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chr6 36936428 36936452 -152343102 + AT_rich Low_complexity Low_complexity 1 24 0 233 268 36 72 chr6 36936932 36937094 -152342460 + MIR SINE MIR 31 195 -67 1278 201 73 28 chr6 36937240 36937384 -152342170 + AluJo SINE Alu 1 137 -165 2287 92 0 0 chr6 36937384 36937687 -152341867 + AluSg SINE Alu 1 303 -7 1278 201 73 28 chr6 36937687 36937830 -152341724 + AluJo SINE Alu 137 301 -1 399 309 36 26 chr6 36937833 36938027 -152341527 + MIR SINE MIR 48 243 -19 855 187 13 0 chr6 36938626 36938776 -152340778 - FRAM SINE Alu -4 172 21 1958 122 0 10 chr6 36939524 36939845 -152339709 - AluSq SINE Alu 0 313 3 1882 121 0 7 chr6 36939859 36940132 -152339422 - AluSx SINE Alu -5 307 37 1755 133 65 0 chr6 36940574 36940852 -152338702 - AluJb SINE Alu -15 297 2 213 111 0 28 chr6 36943974 36944010 -152335544 + (TCC)n Simple_repeat Simple_repeat 1 35 0 249 206 19 62 chr6 36944607 36944767 -152334787 + (CGGG)n Simple_repeat Simple_repeat 2 154 0 247 286 0 13 chr6 36944855 36944932 -152334622 + G-rich Low_complexity Low_complexity 3 78 0 229 187 0 53 chr6 36945022 36945097 -152334457 + C-rich Low_complexity Low_complexity 1 71 0 409 232 232 0 chr6 36947391 36947533 -152332021 - MER5A DNA MER1_type -1 188 14 182 375 98 0 chr6 36947597 36947709 -152331845 - L3 LINE CR1 -2 1575 1453 230 341 78 15 chr6 36947916 36948186 -152331368 - L1MC4a LINE L1 -1834 5974 5688 864 117 0 35 chr6 36948194 36948339 -152331215 - FLAM_C SINE Alu -1 142 3 294 325 55 17 chr6 36948342 36948761 -152330793 - L1MC4a LINE L1 -487 5675 5219 550 289 12 0 chr6 36948827 36948993 -152330561 + MIR SINE MIR 84 251 -11 443 238 0 57 chr6 36949929 36950051 -152329503 + L2 LINE L2 2204 2318 -996 816 113 8 16 chr6 36950051 36950175 -152329379 - FLAM_C SINE Alu -8 135 13 1333 264 78 26 chr6 36950176 36950896 -152328658 + L2 LINE L2 2308 3060 -253 390 21 0 0 chr6 36951969 36952016 -152327538 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 223 240 0 chr6 36952100 36952221 -152327333 - MER91B DNA MER1_type -1 189 40 304 269 140 31 chr6 36954016 36954209 -152325345 - LTR33 LTR ERVL -134 387 174 383 240 30 0 chr6 36954254 36954354 -152325200 - LTR33 LTR ERVL -418 103 1 2150 114 10 0 chr6 36954411 36954717 -152324837 + AluSq SINE Alu 1 309 -4 254 308 58 25 chr6 36954756 36954876 -152324678 + MIR SINE MIR 77 200 -62 412 160 51 29 chr6 36955446 36955621 -152323933 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 272 200 15 15 chr6 36955637 36955702 -152323852 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 1731 209 65 32 chr6 36960867 36960965 -152318589 - Charlie4a DNA MER1_type -1453 508 415 2012 140 7 3 chr6 36960965 36961273 -152318281 + AluSx SINE Alu 1 309 -3 1731 209 65 32 chr6 36961273 36961666 -152317888 - Charlie4a DNA MER1_type -1546 415 1 576 303 48 63 chr6 36961670 36961844 -152317710 + L3 LINE CR1 681 856 -721 1535 183 37 27 chr6 36961844 36962139 -152317415 + AluJo SINE Alu 1 298 -4 576 303 48 63 chr6 36962139 36962377 -152317177 + L3 LINE CR1 856 1087 -490 2313 82 0 7 chr6 36962496 36962800 -152316754 - AluSg SINE Alu -8 302 1 1003 325 98 27 chr6 36962814 36963589 -152315965 + L2 LINE L2 2346 3174 -98 206 240 20 0 chr6 36963661 36963711 -152315843 + L3 LINE CR1 1295 1345 -232 * 303 274 138 37 chr6 36963710 36963923 -152315631 - MIR SINE MIR 0 262 28 2275 94 0 0 chr6 36963923 36964230 -152315324 - AluSg SINE Alu -3 307 1 303 274 138 37 chr6 36964230 36964245 -152315309 - MIR SINE MIR -234 28 16 1182 149 5 21 chr6 36964334 36964528 -152315026 + AluSg/x SINE Alu 88 278 -32 2008 136 0 16 chr6 36964572 36964889 -152314665 - AluJb SINE Alu 0 312 1 2051 128 13 0 chr6 36964982 36965287 -152314267 - AluSx SINE Alu -3 309 1 225 83 0 0 chr6 36965288 36965324 -152314230 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1969 102 14 14 chr6 36965324 36965608 -152313946 - AluSq SINE Alu -29 284 1 838 228 30 0 chr6 36965614 36965781 -152313773 - AluJo SINE Alu -21 291 120 1116 123 48 21 chr6 36965785 36965956 -152313598 - AluJb SINE Alu 0 312 134 2282 78 7 10 chr6 36965956 36966263 -152313291 - AluSq SINE Alu -7 306 1 1116 123 48 21 chr6 36966263 36966278 -152313276 - AluJb SINE Alu -178 134 121 257 183 0 28 chr6 36966361 36966432 -152313122 + CT-rich Low_complexity Low_complexity 1 69 0 1584 169 0 30 chr6 36966432 36966727 -152312827 - AluJo SINE Alu -26 286 1 225 154 0 0 chr6 36966729 36966768 -152312786 + T-rich Low_complexity Low_complexity 1 39 0 854 111 55 99 chr6 36967134 36967175 -152312379 - AluJo/FRAM SINE Alu -4 308 267 2156 128 0 6 chr6 36967175 36967488 -152312066 + AluSx SINE Alu 1 311 -1 854 111 55 99 chr6 36967488 36967627 -152311927 - AluJo/FRAM SINE Alu -45 267 136 2275 87 6 3 chr6 36967946 36968258 -152311296 - AluSq SINE Alu 0 313 1 202 241 0 19 chr6 36968619 36968673 -152310881 + CT-rich Low_complexity Low_complexity 2 54 0 227 186 14 43 chr6 36968862 36968932 -152310622 + GA-rich Low_complexity Low_complexity 1 68 0 2167 128 0 3 chr6 36970756 36971069 -152308485 - AluSx SINE Alu 0 312 1 565 330 58 5 chr6 36973067 36973291 -152306263 + MIR SINE MIR 13 248 -14 23 0 0 0 chr6 36974659 36974682 -152304872 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr6 36976884 36976904 -152302650 + (TG)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chr6 36976904 36976931 -152302623 + AT_rich Low_complexity Low_complexity 1 27 0 185 237 0 0 chr6 36977248 36977286 -152302268 + L2 LINE L2 3225 3262 -10 493 256 43 0 chr6 37077569 37077686 -152201868 - L2 LINE L2 -3 3310 3189 1664 210 46 54 chr6 37080911 37081410 -152198144 - MLT1D LTR MaLR -9 496 2 288 219 48 19 chr6 37081503 37081608 -152197946 + L1MC5 LINE L1 7819 7926 -35 210 37 0 0 chr6 37082722 37082749 -152196805 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 764 123 35 0 chr6 37085610 37085724 -152193830 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr6 37085729 37085756 -152193798 + AT_rich Low_complexity Low_complexity 1 27 0 258 264 57 57 chr6 37086507 37086613 -152192941 + MIR SINE MIR 95 200 -62 2076 136 13 3 chr6 37086628 37086937 -152192617 - AluSq SINE Alu -1 312 1 686 281 23 65 chr6 37087226 37087410 -152192144 + MIR SINE MIR 14 185 -77 2019 126 3 26 chr6 37087410 37087720 -152191834 + AluSx SINE Alu 1 303 -9 686 281 23 65 chr6 37087720 37087795 -152191759 + MIR SINE MIR 185 262 0 375 333 111 5 chr6 37087837 37088079 -152191475 - MIR SINE MIR 0 262 1 439 245 182 0 chr6 37089580 37089723 -152189831 + MER3 DNA MER1_type 27 195 -14 460 321 73 24 chr6 37089861 37090026 -152189528 + MIR SINE MIR 20 192 -70 2230 88 0 7 chr6 37090288 37090583 -152188971 + AluSq SINE Alu 1 293 -20 248 93 23 0 chr6 37092001 37092044 -152187510 + Alu SINE Alu 16 59 -261 495 338 68 32 chr6 37092105 37092324 -152187230 - MIR SINE MIR -8 254 28 2123 110 7 0 chr6 37092481 37092773 -152186781 + AluSx SINE Alu 1 294 -18 459 0 0 0 chr6 37095357 37095408 -152184146 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1665 86 0 0 chr6 37095429 37095638 -152183916 + AluSq SINE Alu 82 290 -23 334 295 6 66 chr6 37095663 37095829 -152183725 + L2 LINE L2 3095 3250 -63 226 291 105 12 chr6 37096209 37096295 -152183259 - MIR3 SINE MIR -112 96 3 286 303 97 35 chr6 37096661 37096806 -152182748 + L2 LINE L2 3119 3272 0 296 341 40 40 chr6 37097400 37097576 -152181978 + MIR SINE MIR 32 207 -55 198 374 74 12 chr6 37097519 37097682 -152181872 - L2 LINE L2 -20 3293 3121 * 1045 142 0 12 chr6 37097757 37097919 -152181635 + AluJb SINE Alu 134 293 -19 180 0 0 0 chr6 37097919 37097939 -152181615 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1506 158 57 57 chr6 37098078 37098227 -152181327 - AluJo SINE Alu -14 298 150 2177 59 42 7 chr6 37098227 37098515 -152181039 - AluY SINE Alu -12 299 2 1506 158 57 57 chr6 37098515 37098663 -152180891 - AluJo SINE Alu -161 151 1 812 175 7 14 chr6 37098664 37098807 -152180747 - FLAM_A SINE Alu 0 142 1 240 250 0 0 chr6 37098811 37098867 -152180687 - FAM SINE Alu -2 173 118 2217 99 0 19 chr6 37099127 37099439 -152180115 + AluSg SINE Alu 1 306 -4 515 243 112 56 chr6 37099445 37099659 -152179895 + MIR SINE MIR 6 231 -31 328 175 16 0 chr6 37099704 37099767 -152179787 - LTR16C LTR ERVL -2 489 426 1626 150 62 0 chr6 37099780 37100054 -152179500 + AluJb SINE Alu 1 291 -21 2166 108 0 3 chr6 37100056 37100344 -152179210 + AluSx SINE Alu 1 287 -25 234 0 0 0 chr6 37100347 37100373 -152179181 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1881 169 3 0 chr6 37100384 37100679 -152178875 + AluJo SINE Alu 1 296 -16 215 311 220 10 chr6 37101003 37101212 -152178342 - L2 LINE L2 -88 3184 2932 21 36 0 0 chr6 37101580 37101608 -152177946 + AT_rich Low_complexity Low_complexity 1 28 0 2244 95 0 7 chr6 37101790 37102094 -152177460 - AluSx SINE Alu -7 305 4 2444 60 0 10 chr6 37102107 37102421 -152177133 - AluY SINE Alu 0 311 1 308 183 29 203 chr6 37102597 37102638 -152176916 - Charlie2 DNA MER1_type -28 2834 2788 1823 153 7 3 chr6 37102638 37102932 -152176622 - AluJb SINE Alu -17 295 1 308 183 29 203 chr6 37102932 37103037 -152176517 - Charlie2 DNA MER1_type -74 2788 2765 1764 105 82 8 chr6 37103037 37103333 -152176221 - AluSx SINE Alu 0 316 1 308 183 29 203 chr6 37103333 37103494 -152176060 - Charlie2 DNA MER1_type -97 2765 2578 1632 154 19 68 chr6 37103571 37103896 -152175658 + AluJb SINE Alu 1 309 -3 2083 133 0 13 chr6 37103921 37104237 -152175317 + AluSx SINE Alu 1 312 0 363 237 0 0 chr6 37104361 37104437 -152175117 - Charlie2 DNA MER1_type -2681 101 26 2339 78 7 0 chr6 37104686 37104993 -152174561 + AluSg SINE Alu 1 309 -1 2433 52 10 3 chr6 37104993 37105300 -152174254 + AluY SINE Alu 1 310 -1 197 0 71 0 chr6 37106170 37106198 -152173356 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 218 329 185 41 chr6 37107786 37108148 -152171406 + L2 LINE L2 2301 2714 -600 2332 74 7 7 chr6 37108152 37108449 -152171105 + AluSp SINE Alu 1 297 -16 406 157 129 0 chr6 37108466 37108536 -152171018 + AluJ/FLAM SINE Alu 1 79 -233 1351 146 39 39 chr6 37108889 37109143 -152170411 - AluJo SINE Alu -32 280 27 955 64 24 0 chr6 37109143 37109268 -152170286 + AluSp/q SINE Alu 167 294 -19 2138 115 3 10 chr6 37109319 37109633 -152169921 - AluSx SINE Alu 0 312 1 202 253 253 47 chr6 37109769 37109939 -152169615 + L2 LINE L2 3001 3205 -108 433 285 126 61 chr6 37111455 37111594 -152167960 + L1MC4 LINE L1 7716 7845 -197 2040 119 3 0 chr6 37111594 37111887 -152167667 + AluSc SINE Alu 6 299 -10 433 285 126 61 chr6 37111887 37112010 -152167544 + L1MC4 LINE L1 7845 7995 -47 1753 167 0 3 chr6 37112012 37112305 -152167249 - AluSx SINE Alu -20 292 1 318 148 16 0 chr6 37112305 37112366 -152167188 + L1ME3A LINE L1 6043 6104 -66 2071 116 7 3 chr6 37113874 37114176 -152165378 + AluSx SINE Alu 1 303 -9 2335 80 0 3 chr6 37114929 37115228 -152164326 + AluSg SINE Alu 1 298 -12 2090 94 7 42 chr6 37115487 37115796 -152163758 + AluSx SINE Alu 1 298 -14 621 113 0 0 chr6 37116678 37116758 -152162796 + AluS SINE Alu 7 86 -226 371 306 79 29 chr6 37216921 37216990 -152062564 - MIR SINE MIR -50 212 148 2135 72 45 34 chr6 37216990 37217282 -152062272 + AluSx SINE Alu 1 295 -17 371 306 79 29 chr6 37217282 37217389 -152062165 - MIR SINE MIR -114 148 30 346 330 58 12 chr6 37217423 37217596 -152061958 - MIR SINE MIR 0 262 82 905 138 7 22 chr6 37217755 37217893 -152061661 + AluJ SINE Alu 3 138 -174 1944 122 74 0 chr6 37217922 37218192 -152061362 + AluSg SINE Alu 1 290 -20 1040 180 53 0 chr6 37218217 37218406 -152061148 + AluJ SINE Alu 114 312 0 2186 127 3 0 chr6 37218406 37218706 -152060848 + AluSq SINE Alu 11 311 -2 440 230 41 76 chr6 37218910 37219096 -152060458 + MIR SINE MIR 33 215 -27 833 111 8 8 chr6 37219523 37219661 -152059893 - FLAM_C SINE Alu 0 138 1 2397 78 3 3 chr6 37219816 37220123 -152059431 - AluSc SINE Alu -2 307 1 2343 64 4 4 chr6 37220613 37220945 -152058609 - AluY SINE Alu 0 332 1 2376 104 0 0 chr6 37221001 37221300 -152058254 + AluSq SINE Alu 1 299 -14 2242 106 3 0 chr6 37221360 37221653 -152057901 - AluSq SINE Alu -19 294 1 1902 183 3 0 chr6 37221664 37221975 -152057579 - AluJb SINE Alu 0 312 1 7370 178 51 50 chr6 37221976 37222421 -152057133 + L1M1 LINE L1 73 516 -7049 816 182 0 0 chr6 37222421 37222553 -152057001 + FLAM_C SINE Alu 1 132 -1 7370 178 51 50 chr6 37222553 37223344 -152056210 + L1M1 LINE L1 516 1304 -6261 2144 124 7 0 chr6 37223344 37223643 -152055911 - AluSx SINE Alu -11 301 1 7370 178 51 50 chr6 37223643 37224400 -152055154 + L1M1 LINE L1 1304 2058 -5507 2083 96 7 7 chr6 37224400 37224692 -152054862 + AluSc SINE Alu 1 292 -17 7370 178 51 50 chr6 37224692 37224863 -152054691 + L1M1 LINE L1 2058 2227 -5338 1905 151 0 19 chr6 37224863 37225181 -152054373 - AluSx SINE Alu 0 312 1 7370 178 51 50 chr6 37225181 37225969 -152053585 + L1M1 LINE L1 2227 3180 -4385 4133 81 18 20 chr6 37225969 37226383 -152053171 + L1MA2 LINE L1 5697 6111 -193 1926 143 0 0 chr6 37226383 37226683 -152052871 - AluSx SINE Alu -12 300 1 4133 81 18 20 chr6 37226683 37226877 -152052677 + L1MA2 LINE L1 6111 6304 0 2133 84 3 3 chr6 37226902 37227244 -152052310 + AluSp SINE Alu 1 342 0 3713 159 11 32 chr6 37227258 37227662 -152051892 - L1MB8 LINE L1 -68 6110 5724 219 69 0 0 chr6 37227662 37227691 -152051863 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3713 159 11 32 chr6 37227691 37227979 -152051575 - L1MB8 LINE L1 -454 5724 5432 2145 122 0 0 chr6 37228035 37228347 -152051207 + AluSx SINE Alu 1 312 0 4483 114 24 36 chr6 37228702 37228931 -152050623 - MER50 LTR ERV1 -23 711 481 2348 87 7 0 chr6 37228931 37229241 -152050313 - AluSx SINE Alu 0 312 1 4483 114 24 36 chr6 37229241 37229731 -152049823 - MER50 LTR ERV1 -253 481 1 25 0 0 0 chr6 37229853 37229878 -152049676 + AT_rich Low_complexity Low_complexity 1 25 0 225 222 0 0 chr6 37230037 37230082 -152049472 - L1MC4a LINE L1 -916 6892 6848 381 43 0 0 chr6 37230101 37230148 -152049406 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1669 168 27 3 chr6 37230160 37230458 -152049096 - AluJb SINE Alu -7 305 1 359 291 11 84 chr6 37230458 37230637 -152048917 - L1MC4 LINE L1 -1112 6930 6765 1647 151 11 25 chr6 37230689 37230998 -152048556 - AluJb SINE Alu 0 305 1 794 111 22 44 chr6 37231385 37231520 -152048034 + MLT1B LTR MaLR 16 147 -243 1999 119 0 0 chr6 37232363 37232640 -152046914 + AluSx SINE Alu 1 277 -35 288 0 0 0 chr6 37232648 37232680 -152046874 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 513 268 32 25 chr6 37233256 37233413 -152046141 + MIR SINE MIR 105 262 0 1704 119 48 24 chr6 37233429 37233586 -152045968 - AluSx SINE Alu -10 302 133 2109 111 20 0 chr6 37233586 37233884 -152045670 - AluSx SINE Alu -8 304 1 1704 119 48 24 chr6 37233884 37234021 -152045533 - AluSx SINE Alu -179 133 1 503 205 86 8 chr6 37234023 37234140 -152045414 - MIR SINE MIR -67 195 70 657 128 96 32 chr6 37234526 37234651 -152044903 - FLAM_C SINE Alu 0 133 1 1899 130 65 6 chr6 37235067 37235391 -152044163 - MER61A LTR ERV1 0 343 1 1159 154 4 53 chr6 37235602 37235849 -152043705 - AluJo SINE Alu -77 235 1 303 258 114 74 chr6 37235935 37236233 -152043321 - L1M2 LINE L1 -4797 2052 1743 2177 98 0 10 chr6 37236264 37236570 -152042984 + AluSp SINE Alu 1 303 -10 31 26 0 0 chr6 37236570 37236608 -152042946 + AT_rich Low_complexity Low_complexity 1 38 0 1829 142 3 0 chr6 37236608 37236890 -152042664 - AluJb SINE Alu -29 283 1 716 173 17 23 chr6 37236905 37237078 -152042476 + L1MB4 LINE L1 5776 5947 -233 24 0 0 0 chr6 37237100 37237124 -152042430 + AT_rich Low_complexity Low_complexity 1 24 0 374 100 17 0 chr6 37237176 37237236 -152042318 + (TG)n Simple_repeat Simple_repeat 2 62 0 1009 161 5 55 chr6 37237246 37237280 -152042274 - L1MB4 LINE L1 -14 6166 6132 270 0 0 0 chr6 37237280 37237310 -152042244 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2106 96 0 0 chr6 37237314 37237595 -152041959 - AluSx SINE Alu -31 281 1 1009 161 5 55 chr6 37237595 37237772 -152041782 - L1MB4 LINE L1 -51 6129 5961 794 140 0 70 chr6 37237780 37237923 -152041631 - FLAM_C SINE Alu 0 133 1 711 132 20 123 chr6 37237998 37238129 -152041425 - L1MB4 LINE L1 -233 5947 5839 2103 78 0 11 chr6 37238129 37238437 -152041117 + AluSx SINE Alu 2 306 0 711 132 20 123 chr6 37238437 37238506 -152041048 - L1MB4 LINE L1 -341 5839 5765 911 102 0 29 chr6 37238546 37238683 -152040871 - FLAM_C SINE Alu 0 133 1 309 226 116 110 chr6 37239007 37239153 -152040401 - L1MC5 LINE L1 -36 7925 7779 753 237 6 35 chr6 37239713 37239802 -152039752 - MER115 DNA AcHobo -81 612 529 662 226 89 96 chr6 37239802 37240038 -152039516 + LTR16A1 LTR ERVL 1 235 -222 2061 92 0 7 chr6 37240038 37240350 -152039204 - AluSq SINE Alu 0 310 1 662 226 89 96 chr6 37240350 37240572 -152038982 + LTR16A1 LTR ERVL 235 457 0 753 237 6 35 chr6 37240572 37240655 -152038899 - MER115 DNA AcHobo -164 529 445 763 332 77 16 chr6 37240725 37241035 -152038519 - MER115 DNA AcHobo -359 334 6 554 200 37 0 chr6 37241620 37241755 -152037799 + L1MD3 LINE L1 7844 7983 -12 2067 86 4 0 chr6 37241809 37242123 -152037431 + AluSq SINE Alu 5 319 0 1882 126 0 23 chr6 37243109 37243410 -152036144 - AluSq SINE Alu -17 296 3 523 62 0 0 chr6 37243428 37243492 -152036062 - U6 snRNA snRNA -6 101 38 1170 99 0 12 chr6 37243534 37243696 -152035858 - AluSq SINE Alu -153 160 1 22 56 0 0 chr6 37243748 37243784 -152035770 + AT_rich Low_complexity Low_complexity 1 36 0 260 283 67 8 chr6 37243978 37244098 -152035456 - LTR67 LTR ERVL 0 557 431 1837 141 23 13 chr6 37244327 37244631 -152034923 - AluSx SINE Alu -5 307 1 1392 230 100 84 chr6 37244671 37244966 -152034588 - HAL1 LINE L1 -689 1818 1529 1705 157 23 33 chr6 37244966 37245266 -152034288 + AluJo SINE Alu 13 309 -3 1392 230 100 84 chr6 37245266 37245604 -152033950 - HAL1 LINE L1 -978 1529 1171 1950 127 33 7 chr6 37245604 37245904 -152033650 - AluSx SINE Alu -4 308 1 1392 230 100 84 chr6 37245904 37245957 -152033597 - HAL1 LINE L1 -1336 1171 1120 409 237 50 111 chr6 37245960 37246085 -152033469 - HAL1 LINE L1 -1471 1036 926 1687 162 30 3 chr6 37246085 37246387 -152033167 - AluJb SINE Alu -2 310 1 409 237 50 111 chr6 37246387 37246459 -152033095 - HAL1 LINE L1 -1581 926 851 594 226 94 19 chr6 37246462 37246621 -152032933 + LTR41 LTR ERVL 9 179 -594 251 158 85 85 chr6 37246986 37247068 -152032486 + LTR41 LTR ERVL 651 732 -41 676 221 197 52 chr6 37247225 37247277 -152032277 - LTR50 LTR ERVL -8 787 744 2179 99 7 0 chr6 37247277 37247579 -152031975 - AluSq SINE Alu -7 306 3 676 221 197 52 chr6 37247579 37248041 -152031513 - LTR50 LTR ERVL -51 744 93 349 374 35 0 chr6 37248084 37248258 -152031296 - HAL1 LINE L1 -1787 720 541 199 131 36 36 chr6 37248267 37248351 -152031203 + T-rich Low_complexity Low_complexity 2 85 0 857 157 0 8 chr6 37248403 37248537 -152031017 - FLAM_C SINE Alu 0 133 1 550 283 113 36 chr6 37248584 37248895 -152030659 - HAL1 LINE L1 -2045 462 110 221 0 35 0 chr6 37248895 37248924 -152030630 + (TC)n Simple_repeat Simple_repeat 1 30 0 550 283 113 36 chr6 37248924 37249026 -152030528 - HAL1 LINE L1 -2397 110 17 2010 107 0 29 chr6 37249044 37249353 -152030201 + AluSp SINE Alu 1 300 -13 1790 158 0 7 chr6 37249872 37250193 -152029361 + AluJb SINE Alu 1 319 0 1768 155 10 7 chr6 37250197 37250494 -152029060 + AluJb SINE Alu 1 298 -14 366 250 20 40 chr6 37250510 37250610 -152028944 - L1ME4a LINE L1 -58 6063 5966 876 204 32 0 chr6 37250611 37250797 -152028757 - AluJo SINE Alu 0 312 121 1991 118 10 3 chr6 37251108 37251414 -152028140 + AluSx SINE Alu 1 308 -4 1253 206 0 40 chr6 37251423 37251671 -152027883 + MER8 DNA MER2_type 1 238 -1 35 24 0 0 chr6 37252277 37252319 -152027235 + AT_rich Low_complexity Low_complexity 1 42 0 1722 167 0 17 chr6 37252319 37252612 -152026942 - AluJb SINE Alu -24 288 1 1690 153 122 82 chr6 37252615 37252971 -152026583 + MLT2D LTR ERVL 7 382 -32 228 35 0 0 chr6 37252971 37253000 -152026554 + (GA)n Simple_repeat Simple_repeat 1 29 0 1690 153 122 82 chr6 37253000 37253035 -152026519 + MLT2D LTR ERVL 382 414 0 1573 109 113 4 chr6 37253185 37253462 -152026092 - AluSx SINE Alu 0 305 1 250 276 86 9 chr6 37253604 37253720 -152025834 - L1ME4a LINE L1 -381 5740 5616 1528 171 49 3 chr6 37254364 37254668 -152024886 - MER33 DNA MER1_type -6 318 1 2029 105 0 33 chr6 37254760 37255065 -152024489 - AluSq SINE Alu -18 295 1 1308 200 0 24 chr6 37256065 37256320 -152023234 + AluJb SINE Alu 7 255 -57 301 298 50 21 chr6 37256320 37256461 -152023093 + L1M4 LINE L1 3182 3326 -2820 227 264 111 14 chr6 37256603 37256675 -152022879 - MIR3 SINE MIR -125 83 5 284 322 76 17 chr6 37256744 37256862 -152022692 + L2 LINE L2 3189 3313 0 270 136 0 0 chr6 37256941 37256985 -152022569 + (TA)n Simple_repeat Simple_repeat 1 44 0 797 151 0 0 chr6 37256985 37257104 -152022450 - FLAM_C SINE Alu -20 123 5 597 251 30 12 chr6 37257136 37257303 -152022251 + MER104 DNA Tc2 4 173 -7 885 55 12 93 chr6 37258213 37258470 -152021084 + (TCTCCC)n Simple_repeat Simple_repeat 1 236 0 10425 45 8 55 chr6 37258475 37259929 -152019625 + SVA Other Other 2 1386 0 199 231 0 0 chr6 37260278 37260317 -152019237 + L2 LINE L2 3153 3191 -81 200 355 84 0 chr6 37260349 37260456 -152019098 + L3b LINE CR1 1179 1294 -289 468 284 43 81 chr6 37260497 37260708 -152018846 + MIR SINE MIR 30 232 -30 234 310 11 23 chr6 37260713 37260800 -152018754 + L2 LINE L2 3009 3094 -178 2219 105 0 0 chr6 37260959 37261254 -152018300 + AluSg SINE Alu 1 295 -15 498 274 8 0 chr6 37261348 37261472 -152018082 - MER104 DNA Tc2 -3 177 53 625 177 24 8 chr6 37261487 37261611 -152017943 - FLAM_C SINE Alu -5 128 3 2156 109 0 3 chr6 37261623 37261926 -152017628 - AluSx SINE Alu -6 306 5 342 238 90 58 chr6 37262032 37262221 -152017333 - L2 LINE L2 -89 3224 3030 1968 153 0 0 chr6 37263126 37263433 -152016121 - AluJo SINE Alu -5 307 1 1843 153 6 10 chr6 37263439 37263752 -152015802 - AluJb SINE Alu 0 312 1 450 250 73 101 chr6 37264454 37264782 -152014772 - MLT1J LTR MaLR -84 427 109 2120 91 7 0 chr6 37265384 37265669 -152013885 + AluSx SINE Alu 1 287 -25 2201 79 3 3 chr6 37266348 37266639 -152012915 + AluSq SINE Alu 1 291 -22 2066 104 7 7 chr6 37267327 37267626 -152011928 - AluSg SINE Alu -11 299 1 3253 135 18 6 chr6 37268478 37268967 -152010587 + LTR42 LTR ERVL 1 495 0 243 0 0 0 chr6 37271189 37271216 -152008338 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 2126 120 0 0 chr6 37271232 37271532 -152008022 - AluSx SINE Alu -12 300 1 1527 189 0 7 chr6 37271541 37271837 -152007717 - AluJo SINE Alu -1 311 18 2137 103 59 18 chr6 37272923 37273264 -152006290 - THE1A LTR MaLR 0 355 1 1874 148 6 10 chr6 37273600 37273997 -152005557 - AluJb SINE Alu 0 397 2 287 167 17 17 chr6 37274113 37274173 -152005381 - L1ME1 LINE L1 -11 6155 6096 576 181 101 0 chr6 37274196 37274345 -152005209 - L1MD3 LINE L1 0 7995 7832 960 123 0 0 chr6 37274387 37274525 -152005029 - AluSp SINE Alu -23 290 153 1224 156 54 0 chr6 37274548 37274772 -152004782 - L1MD3 LINE L1 -871 7124 6889 829 180 48 12 chr6 37274772 37274939 -152004615 - FRAM SINE Alu -7 169 1 1646 198 0 0 chr6 37274952 37275250 -152004304 - AluJo SINE Alu -14 298 1 1868 136 7 10 chr6 37275265 37275574 -152003980 - AluSp SINE Alu -5 308 1 1200 241 33 13 chr6 37275575 37275874 -152003680 - L1MC4 LINE L1 -1114 6928 6624 1656 139 168 0 chr6 37275875 37276184 -152003370 - MER46B DNA MER2_type 0 236 1 1465 255 133 32 chr6 37276188 37276468 -152003086 - L1MD3 LINE L1 -1388 6607 6357 1585 161 50 17 chr6 37276468 37276766 -152002788 - AluJo SINE Alu -4 308 1 1465 255 133 32 chr6 37276766 37277132 -152002422 - L1MD3 LINE L1 -1638 6357 5896 1761 154 43 3 chr6 37277576 37277875 -152001679 - AluJo SINE Alu -1 311 1 322 308 204 36 chr6 37278136 37278493 -152001061 + L2 LINE L2 2856 3272 0 26 0 0 0 chr6 37278610 37278636 -152000918 + AT_rich Low_complexity Low_complexity 1 26 0 1011 182 76 57 chr6 37278674 37278734 -152000820 - L1ME2 LINE L1 -9 6155 6098 1937 163 0 0 chr6 37278734 37279040 -152000514 - AluJb SINE Alu -6 306 1 1011 182 76 57 chr6 37279040 37279243 -152000311 - L1ME2 LINE L1 -66 6098 5887 2007 134 0 10 chr6 37279273 37279579 -151999975 - AluSx SINE Alu -9 303 1 957 261 15 52 chr6 37281610 37281878 -151997676 - MIR SINE MIR 0 262 5 1951 115 7 10 chr6 37282119 37282414 -151997140 + AluSx SINE Alu 1 294 -18 350 289 248 8 chr6 37282858 37283100 -151996454 + L3 LINE CR1 1261 1560 -17 2099 133 0 0 chr6 37283706 37284014 -151995540 + AluSg SINE Alu 1 308 -2 295 104 10 0 chr6 37284202 37284254 -151995300 + Alu SINE Alu 254 296 -6 2274 50 0 4 chr6 37284256 37284582 -151994972 + AluY SINE Alu 1 325 0 240 102 0 61 chr6 37284962 37285011 -151994543 + MER63A DNA MER1_type 1 46 -164 361 246 18 9 chr6 37285085 37285193 -151994361 + LTR33A LTR ERVL 443 523 0 396 338 68 36 chr6 37285542 37285823 -151993731 + HERVL LTR ERVL 414 703 -5061 2648 167 55 25 chr6 37285917 37286212 -151993342 - MLT1D LTR MaLR 0 505 188 2061 121 0 0 chr6 37286212 37286509 -151993045 - AluSg SINE Alu -13 297 1 2648 167 55 25 chr6 37286509 37286703 -151992851 - MLT1D LTR MaLR -317 188 1 1181 224 59 3 chr6 37286754 37287040 -151992514 + MLT1E3 LTR MaLR 323 624 0 716 340 133 24 chr6 37287114 37287702 -151991852 + HERVL LTR ERVL 1186 1837 -3927 1873 133 7 23 chr6 37287896 37288196 -151991358 + AluSx SINE Alu 1 295 -17 357 326 34 7 chr6 37288286 37288433 -151991121 + HERVL LTR ERVL 3125 3275 -2379 2991 290 63 20 chr6 37288477 37289562 -151989992 + HERVL LTR ERVL 3404 4534 -1230 3256 234 50 30 chr6 37289601 37290699 -151988855 - L1ME3 LINE L1 0 6162 5054 227 207 0 134 chr6 37290699 37290718 -151988836 + MIR SINE MIR 178 198 -64 2276 77 0 7 chr6 37290718 37291016 -151988538 - AluSx SINE Alu -16 296 1 227 207 0 134 chr6 37291016 37291078 -151988476 + MIR SINE MIR 198 248 -14 456 364 62 4 chr6 37292291 37292516 -151987038 + MIR SINE MIR 8 245 -17 913 226 55 0 chr6 37292715 37292914 -151986640 + MER63A DNA MER1_type 1 210 0 730 127 18 30 chr6 37293171 37293336 -151986218 + CT-rich Low_complexity Low_complexity 1 163 0 1903 157 3 0 chr6 37293341 37293647 -151985907 - AluSx SINE Alu -5 307 1 2128 139 3 0 chr6 37294673 37295004 -151984550 + L1PB1 LINE L1 5812 6143 -8 805 248 81 14 chr6 37295521 37295731 -151983823 - MER58A DNA MER1_type 0 224 1 2391 70 0 0 chr6 37295997 37296295 -151983259 - AluY SINE Alu -13 298 1 638 296 181 41 chr6 37301127 37301383 -151978171 - L2 LINE L2 0 3313 3094 1915 96 82 0 chr6 37301383 37301664 -151977890 + AluSp SINE Alu 1 304 -9 638 296 181 41 chr6 37301664 37301822 -151977732 - L2 LINE L2 -219 3094 2841 1905 246 77 0 chr6 37302159 37302676 -151976878 - L1MC4 LINE L1 -229 7813 7257 1334 239 64 80 chr6 37302656 37302976 -151976578 - L1MCa LINE L1 -3876 2731 2408 * 1510 199 0 30 chr6 37302976 37303277 -151976277 - AluJb SINE Alu -20 292 1 1334 239 64 80 chr6 37303277 37303377 -151976177 - L1MCa LINE L1 -4199 2408 2308 1882 149 13 0 chr6 37303377 37303678 -151975876 - AluSx SINE Alu -2 310 6 1334 239 64 80 chr6 37303678 37304035 -151975519 - L1MCa LINE L1 -4299 2308 1965 1103 115 42 36 chr6 37304090 37304282 -151975272 + AluSp SINE Alu 17 209 -104 7965 129 90 96 chr6 37304285 37305991 -151973563 - pTR5 LTR ERV1 0 2438 743 715 71 0 10 chr6 37305991 37306089 -151973465 + AluSp SINE Alu 206 302 -11 594 302 79 18 chr6 37306115 37306570 -151972984 - L1MCa LINE L1 -4725 1882 1279 2004 110 0 0 chr6 37306686 37306959 -151972595 - AluSx SINE Alu -39 273 1 1389 287 153 34 chr6 37307090 37307895 -151971659 - L2 LINE L2 -592 2722 1822 457 291 70 78 chr6 37307933 37308379 -151971175 + HAL1 LINE L1 75 516 -1991 7017 126 182 66 chr6 37308392 37309912 -151969642 - pTR5 LTR ERV1 -1 2437 742 2816 241 87 36 chr6 37309919 37310994 -151968560 + HAL1 LINE L1 527 1656 -851 420 276 0 0 chr6 37311012 37311099 -151968455 + MLT1J1 LTR MaLR 36 122 -324 1409 253 44 39 chr6 37311189 37311647 -151967907 + MER74B LTR ERVL 70 529 -93 620 229 73 42 chr6 37311736 37311928 -151967626 + MLT1J1 LTR MaLR 242 439 -7 738 256 112 75 chr6 37311935 37312389 -151967165 + HAL1 LINE L1 1650 2120 -387 449 236 47 99 chr6 37312417 37312650 -151966904 + HAL1 LINE L1 2083 2303 -204 865 216 0 0 chr6 37312704 37312866 -151966688 + FRAM SINE Alu 1 162 -4 206 250 0 0 chr6 37313094 37313105 -151966449 + G-rich Low_complexity Low_complexity 1 11 -37 2033 117 3 3 chr6 37313105 37313405 -151966149 + AluSx SINE Alu 1 300 -12 206 250 0 0 chr6 37313405 37313441 -151966113 + G-rich Low_complexity Low_complexity 10 48 0 187 307 20 89 chr6 37313533 37313634 -151965920 + MER5A DNA MER1_type 81 174 -15 323 281 58 22 chr6 37313637 37313776 -151965778 - L2 LINE L2 -1635 1679 1536 394 253 41 89 chr6 37313901 37314047 -151965507 + L2 LINE L2 3134 3272 0 4459 113 19 6 chr6 37314649 37315332 -151964222 + L1PB1 LINE L1 5460 6151 0 737 256 20 5 chr6 37316964 37317159 -151962395 + L1ME3 LINE L1 5903 6100 -62 814 136 0 0 chr6 37317165 37317283 -151962271 + FLAM_C SINE Alu 1 118 -25 21 57 0 0 chr6 37317287 37317322 -151962232 + AT_rich Low_complexity Low_complexity 1 35 0 1005 151 155 8 chr6 37317407 37317658 -151961896 + L1MA9 LINE L1 6020 6307 -5 2067 90 27 27 chr6 37317695 37317994 -151961560 + AluSg SINE Alu 11 309 -1 743 268 24 6 chr6 37318229 37318393 -151961161 - MIR SINE MIR -85 177 11 850 221 44 72 chr6 37319289 37319529 -151960025 - Charlie2 DNA MER1_type -6 2856 2628 850 141 0 30 chr6 37319529 37319664 -151959890 - FLAM_C SINE Alu -1 132 2 850 221 44 72 chr6 37319664 37319785 -151959769 - Charlie2 DNA MER1_type -234 2628 2505 639 155 19 0 chr6 37319863 37319966 -151959588 - L1MC1 LINE L1 -6 6327 6223 1255 143 43 0 chr6 37319971 37320180 -151959374 - L1MC1 LINE L1 -196 6137 5920 471 134 109 17 chr6 37320181 37320300 -151959254 - Charlie2 DNA MER1_type -356 2506 2377 1978 265 78 87 chr6 37320300 37320404 -151959150 - Charlie2b DNA MER1_type -1753 1029 926 2112 113 3 0 chr6 37320404 37320706 -151958848 - AluSx SINE Alu -9 303 1 1978 265 78 87 chr6 37320706 37320726 -151958828 - Charlie2b DNA MER1_type -1856 926 907 545 244 207 9 chr6 37320726 37320939 -151958615 - MIR SINE MIR -3 259 5 1978 265 78 87 chr6 37320939 37321851 -151957703 - Charlie2b DNA MER1_type -1875 907 1 2066 119 0 14 chr6 37322181 37322476 -151957078 - AluSx SINE Alu -21 291 1 376 115 0 213 chr6 37322518 37322584 -151956970 - L1MB8 LINE L1 -3 6175 6097 2060 124 0 13 chr6 37322584 37322898 -151956656 + AluSx SINE Alu 1 310 -2 376 115 0 213 chr6 37322898 37322919 -151956635 - L1MB8 LINE L1 -81 6097 6117 2205 87 0 32 chr6 37322919 37323230 -151956324 + AluSx SINE Alu 1 301 -11 376 115 0 213 chr6 37323230 37323263 -151956291 - L1MB8 LINE L1 -60 6118 6080 356 329 79 35 chr6 37323263 37323491 -151956063 - HAL1 LINE L1 -1156 1351 1114 650 180 68 46 chr6 37323770 37323830 -151955724 - LTR47A LTR ERVL 0 452 395 2034 128 34 90 chr6 37323830 37323976 -151955578 + LTR47B LTR ERVL 1 154 -289 1666 171 0 10 chr6 37323976 37324286 -151955268 - AluJo SINE Alu -5 307 1 2034 128 34 90 chr6 37324286 37324608 -151954946 + LTR47B LTR ERVL 154 443 0 650 180 68 46 chr6 37324608 37324713 -151954841 - LTR47A LTR ERVL -57 395 288 4203 128 127 61 chr6 37324908 37326239 -151953315 - pTR5 LTR ERV1 0 2438 170 574 182 0 58 chr6 37326290 37326411 -151953143 - MER4B-int LTR ERV1 -677 6081 5968 2012 127 0 27 chr6 37326787 37327087 -151952467 - AluSx SINE Alu 0 312 21 277 149 0 0 chr6 37327164 37327211 -151952343 - MER4B-int LTR ERV1 -790 5968 5922 308 369 0 0 chr6 37327925 37328066 -151951488 - LTR47A-int LTR ERVL -2426 3259 3119 200 315 0 0 chr6 37328144 37328198 -151951356 - L3 LINE CR1 -957 620 567 570 193 126 0 chr6 37328351 37328470 -151951084 - AluJo SINE Alu -176 136 3 2570 71 7 0 chr6 37328494 37328802 -151950752 - AluSp SINE Alu -3 310 1 610 287 26 26 chr6 37329031 37329338 -151950216 - LTR47A-int LTR ERVL -2466 3581 3275 401 333 35 28 chr6 37329774 37330056 -151949498 - LTR47A-int LTR ERVL -2699 2644 2361 2220 100 0 0 chr6 37330060 37330377 -151949177 + AluSg SINE Alu 1 317 0 3482 152 2 3 chr6 37330453 37331153 -151948401 + L1PA13 LINE L1 4740 5438 -736 451 100 0 0 chr6 37331153 37331213 -151948341 + AluSp/q SINE Alu 232 291 -22 5538 77 3 15 chr6 37331213 37331483 -151948071 + L1PA13 LINE L1 5422 5694 -469 2257 101 3 3 chr6 37331483 37331781 -151947773 + AluSp SINE Alu 1 298 -15 5538 77 3 15 chr6 37331781 37332261 -151947293 + L1PA13 LINE L1 5694 6163 0 7561 52 3 30 chr6 37332537 37334003 -151945551 + SVA Other Other 154 1425 0 282 339 50 53 chr6 37334007 37334346 -151945208 - LTR47A-int LTR ERVL -4187 1860 1523 2464 84 3 0 chr6 37334778 37335077 -151944477 - AluSq SINE Alu -13 300 1 2214 116 23 0 chr6 37335078 37335380 -151944174 - AluSx SINE Alu -3 309 1 327 333 18 23 chr6 37336356 37336527 -151943027 - LTR47A-int LTR ERVL -5159 184 15 711 224 79 0 chr6 37336544 37336709 -151942845 - LTR47A LTR ERVL 0 452 275 1597 135 8 35 chr6 37336916 37337176 -151942378 + AluJo SINE Alu 1 253 -59 575 253 41 63 chr6 37340306 37340465 -151939089 - MIR SINE MIR -1 261 107 2341 62 56 0 chr6 37340465 37340753 -151938801 + AluSp SINE Alu 1 304 -9 575 253 41 63 chr6 37340753 37340814 -151938740 - MIR SINE MIR -155 107 46 341 254 82 37 chr6 37341067 37341201 -151938353 + MER5A DNA MER1_type 38 177 -12 396 0 0 0 chr6 37341489 37341533 -151938021 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 2217 123 0 0 chr6 37341535 37341837 -151937717 - AluSx SINE Alu -10 302 1 2171 132 3 0 chr6 37341837 37342141 -151937413 - AluSx SINE Alu -7 305 1 506 265 112 18 chr6 37342181 37342351 -151937203 - MIR SINE MIR -75 187 2 2149 164 40 26 chr6 37343852 37344278 -151935276 - MSTB1 LTR MaLR 0 432 1 501 308 39 0 chr6 37344919 37345075 -151934479 - MLT1J LTR MaLR -334 177 16 4277 86 19 81 chr6 37345085 37345246 -151934308 + L1MA1 LINE L1 5616 5785 -517 2389 107 0 0 chr6 37345246 37345545 -151934009 + AluSg SINE Alu 1 299 -11 2208 110 13 13 chr6 37345546 37345856 -151933698 + AluSg SINE Alu 1 310 0 4277 86 19 81 chr6 37345856 37346424 -151933130 + L1MA1 LINE L1 5784 6302 0 21 0 0 0 chr6 37346424 37346445 -151933109 + AT_rich Low_complexity Low_complexity 1 21 0 356 208 13 0 chr6 37346458 37346535 -151933019 - L1MEd LINE L1 -5284 835 758 551 176 46 28 chr6 37346640 37346748 -151932806 - FRAM SINE Alu -45 131 22 30 0 0 0 chr6 37346818 37346848 -151932706 + AT_rich Low_complexity Low_complexity 1 30 0 248 196 41 52 chr6 37346848 37346945 -151932609 - L1MA7 LINE L1 -3 6288 6193 312 248 45 98 chr6 37347027 37347160 -151932394 - L1MEd LINE L1 -5638 481 356 271 256 37 12 chr6 37347431 37347513 -151932041 + MIR SINE MIR 164 247 -15 324 300 40 20 chr6 37347714 37347814 -151931740 - L1MEd LINE L1 -5577 542 441 195 294 88 10 chr6 37348168 37348270 -151931284 + L2 LINE L2 3034 3143 -170 860 136 8 15 chr6 37348861 37348993 -151930561 + AluJb SINE Alu 3 133 -179 703 190 10 105 chr6 37349102 37349302 -151930252 + AluSg/x SINE Alu 118 298 -12 606 263 32 11 chr6 37349322 37349512 -151930042 + L1ME3 LINE L1 5961 6154 -8 2129 132 26 0 chr6 37349555 37349858 -151929696 - AluSx SINE Alu -1 311 1 3002 198 163 15 chr6 37349916 37350665 -151928889 + MER21B LTR ERV1 3 862 -1 637 136 32 0 chr6 37350682 37350807 -151928747 - L1MA7 LINE L1 -18 6273 6145 2291 101 0 3 chr6 37350893 37351189 -151928365 + AluSg SINE Alu 1 295 -15 546 344 20 25 chr6 37351194 37351438 -151928116 + MIR SINE MIR 15 257 -5 2335 92 3 0 chr6 37352225 37352525 -151927029 - AluSq SINE Alu 0 301 1 2129 202 60 84 chr6 37352641 37353323 -151926231 + LTR65 LTR ERV1 1 666 -3 481 141 0 0 chr6 37354625 37354696 -151924858 + MSTA LTR MaLR 1 71 -357 3148 56 86 0 chr6 37354696 37355105 -151924449 - MLT2A1 LTR ERVL 0 444 1 36490 67 9 4 chr6 37355105 37358719 -151920835 - HERVL-A1 LTR ERVL 0 5654 2009 2334 100 10 0 chr6 37358719 37359019 -151920535 - AluSg SINE Alu -5 305 3 36490 67 9 4 chr6 37359019 37360156 -151919398 - HERVL-A1 LTR ERVL -3645 2009 879 2503 90 3 0 chr6 37362903 37363215 -151916339 + AluSp SINE Alu 1 313 0 276 100 0 0 chr6 37363531 37363571 -151915983 + (TCCCC)n Simple_repeat Simple_repeat 1 40 0 665 161 12 12 chr6 37363590 37363751 -151915803 + CT-rich Low_complexity Low_complexity 3 163 0 315 281 137 29 chr6 37363878 37364017 -151915537 - L2 LINE L2 0 3313 3160 2064 116 39 0 chr6 37364242 37364549 -151915005 - AluSq SINE Alu 0 313 1 533 185 0 0 chr6 37365131 37365239 -151914315 + L1MB3 LINE L1 6076 6183 0 282 194 0 0 chr6 37365272 37365334 -151914220 + GA-rich Low_complexity Low_complexity 3 64 0 2418 98 0 3 chr6 37365543 37365850 -151913704 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr6 37366140 37366173 -151913381 + AT_rich Low_complexity Low_complexity 1 33 0 1521 209 34 45 chr6 37366218 37366553 -151913001 - MLT1A2 LTR MaLR 0 374 42 1735 127 57 50 chr6 37366553 37366852 -151912702 + AluJo SINE Alu 1 301 -11 1521 209 34 45 chr6 37366852 37366894 -151912660 - MLT1A2 LTR MaLR -332 42 1 518 246 24 62 chr6 37367006 37367217 -151912337 + HAL1 LINE L1 2299 2501 -6 255 158 88 18 chr6 37367376 37367433 -151912121 + MER5A DNA MER1_type 1 61 -128 737 188 0 15 chr6 37367438 37367571 -151911983 - FLAM_C SINE Alu 0 133 3 2168 132 10 0 chr6 37367583 37367887 -151911667 - AluSg SINE Alu -3 307 1 503 273 106 0 chr6 37368191 37368323 -151911231 + L2 LINE L2 3122 3267 -5 242 325 50 50 chr6 37368330 37368610 -151910944 - L2 LINE L2 -970 2344 2065 264 299 103 0 chr6 37370390 37370487 -151909067 + MIR SINE MIR 66 172 -90 317 179 62 89 chr6 37371960 37372072 -151907482 - L1ME LINE L1 -5255 815 707 194 377 0 0 chr6 37379464 37379541 -151900013 - MIR3 SINE MIR -53 155 79 623 259 27 23 chr6 37379545 37379765 -151899789 - MIR SINE MIR -3 259 39 281 320 31 16 chr6 37379870 37379998 -151899556 - MIR SINE MIR -50 212 83 299 361 48 7 chr6 37380108 37380260 -151899294 + MIR SINE MIR 37 195 -67 184 317 77 10 chr6 37380420 37380524 -151899030 + L2 LINE L2 3045 3155 -158 2217 109 0 0 chr6 37380554 37380857 -151898697 - AluY SINE Alu -8 303 1 1236 210 11 32 chr6 37380860 37381165 -151898389 - AluJb SINE Alu 0 307 9 279 0 0 0 chr6 37381166 37381197 -151898357 + (GCCTG)n Simple_repeat Simple_repeat 4 34 0 438 181 53 0 chr6 37381197 37381291 -151898263 + L2 LINE L2 3215 3313 0 1853 157 23 0 chr6 37381960 37382265 -151897289 + AluSx SINE Alu 1 312 0 372 114 63 0 chr6 37382271 37382350 -151897204 + GA-rich Low_complexity Low_complexity 5 88 0 441 265 137 25 chr6 37382493 37382560 -151896994 + L1ME4a LINE L1 5895 5953 -168 685 155 95 0 chr6 37382560 37382676 -151896878 + FLAM_C SINE Alu 5 131 -2 441 265 137 25 chr6 37382676 37382812 -151896742 + L1ME4a LINE L1 5953 6121 0 262 389 8 24 chr6 37384347 37384473 -151895081 + MIR SINE MIR 123 246 -16 289 285 131 0 chr6 37384641 37384771 -151894783 + MIR SINE MIR 50 196 -66 2182 116 0 6 chr6 37384775 37385086 -151894468 + AluSx SINE Alu 3 311 -1 520 301 82 11 chr6 37385173 37385356 -151894198 - MER91A DNA MER1_type 0 196 1 390 202 90 11 chr6 37386543 37386632 -151892922 + L2 LINE L2 3203 3298 -15 1078 189 32 23 chr6 37387105 37387322 -151892232 + MER20 DNA MER1_type 1 219 0 252 306 102 36 chr6 37387519 37387715 -151891839 - MIR SINE MIR -34 228 20 286 352 83 0 chr6 37388030 37388175 -151891379 - MIR3 SINE MIR -20 188 32 379 227 45 83 chr6 37388601 37388733 -151890821 - MIR SINE MIR 0 262 136 * 384 199 108 17 chr6 37388719 37388866 -151890688 + MIR SINE MIR 101 262 0 247 228 13 38 chr6 37388846 37388925 -151890629 - MIR SINE MIR -97 165 89 * 980 284 116 14 chr6 37390373 37390567 -151888987 + L1M4 LINE L1 4585 4758 -1388 2362 70 0 7 chr6 37390567 37390866 -151888688 + AluSq SINE Alu 1 297 -16 980 284 116 14 chr6 37390866 37391179 -151888375 + L1M4 LINE L1 4758 5144 -1002 283 306 95 7 chr6 37392615 37392762 -151886792 + MIR SINE MIR 66 225 -37 1680 103 157 0 chr6 37392778 37393040 -151886514 + AluSq SINE Alu 1 303 0 507 73 0 0 chr6 37393040 37393108 -151886446 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 399 206 43 0 chr6 37393495 37393587 -151885967 + MIR SINE MIR 49 144 -118 445 143 0 0 chr6 37393839 37393916 -151885638 + HY1 scRNA scRNA 36 112 0 374 260 70 50 chr6 37395473 37395616 -151883938 - MIR SINE MIR -63 145 45 337 262 0 23 chr6 37395890 37395986 -151883568 + MIR SINE MIR 69 162 -63 2681 101 11 0 chr6 37395986 37396363 -151883191 + LTR57 LTR ERVL 1 381 -30 2030 99 30 16 chr6 37396624 37396927 -151882627 + AluSx SINE Alu 1 307 -5 833 215 93 15 chr6 37397532 37397737 -151881817 + MLT1J LTR MaLR 2 222 -289 181 286 36 0 chr6 37397737 37397793 -151881761 + L2 LINE L2 2753 2810 -504 813 191 120 11 chr6 37397793 37397976 -151881578 + MER3 DNA MER1_type 1 203 -6 887 285 90 46 chr6 37398025 37398481 -151881073 + L2 LINE L2 2818 3293 -20 198 0 0 0 chr6 37398481 37398503 -151881051 + (A)n Simple_repeat Simple_repeat 1 22 0 384 289 144 37 chr6 37398524 37398794 -151880760 + MLT1J LTR MaLR 210 508 -3 197 276 0 92 chr6 37398833 37398852 -151880702 + MIR SINE MIR 126 145 -117 1738 157 0 47 chr6 37398852 37398999 -151880555 + AluJb SINE Alu 1 127 -185 2081 126 0 13 chr6 37398999 37399308 -151880246 + AluSx SINE Alu 1 305 -7 1738 157 0 47 chr6 37399308 37399479 -151880075 + AluJb SINE Alu 127 304 -8 197 276 0 92 chr6 37399479 37399546 -151880008 + MIR SINE MIR 145 204 -58 233 319 0 0 chr6 37400190 37400259 -151879295 + MIR3 SINE MIR 121 189 -19 29 28 0 0 chr6 37401550 37401586 -151877968 + AT_rich Low_complexity Low_complexity 1 36 0 321 209 351 14 chr6 37401654 37401802 -151877752 - MIR SINE MIR -64 198 1 340 236 56 84 chr6 37402490 37402668 -151876886 + MER5A DNA MER1_type 17 189 0 225 239 282 0 chr6 37405942 37406013 -151873541 - L2 LINE L2 -40 3273 3183 321 153 62 181 chr6 37406896 37407040 -151872514 - MER58 DNA MER1_type -4 2416 211 980 64 7 43 chr6 37407050 37407190 -151872364 + AluY SINE Alu 1 135 -176 1150 92 0 65 chr6 37407223 37407407 -151872147 + AluSg/x SINE Alu 120 291 -21 2197 84 3 0 chr6 37408169 37408478 -151871076 + AluSg SINE Alu 1 310 0 894 269 25 12 chr6 37409016 37409258 -151870296 - MIR SINE MIR -5 257 13 2248 73 7 0 chr6 37509649 37509921 -151769633 + AluSq SINE Alu 1 274 -39 2527 72 0 7 chr6 37510029 37510335 -151769219 - AluY SINE Alu -7 304 1 195 212 106 30 chr6 37510482 37510548 -151769006 + L2 LINE L2 3202 3272 0 394 253 152 86 chr6 37511049 37511306 -151768248 + L2 LINE L2 2175 2448 -866 436 332 99 36 chr6 37511804 37512196 -151767358 + L2 LINE L2 2458 2874 -440 1398 101 0 11 chr6 37512605 37512793 -151766761 + AluSg/x SINE Alu 99 284 -26 264 200 0 0 chr6 37512793 37512848 -151766706 + (TA)n Simple_repeat Simple_repeat 1 55 0 1632 163 7 24 chr6 37512888 37513176 -151766378 - AluJb SINE Alu -14 298 16 2397 47 0 20 chr6 37513932 37514229 -151765325 + AluY SINE Alu 1 291 -20 1643 75 133 61 chr6 37514241 37514519 -151765035 + AluSx SINE Alu 1 298 -14 1443 92 0 5 chr6 37514593 37514815 -151764739 - AluSq SINE Alu 0 327 107 339 25 0 0 chr6 37514820 37514860 -151764694 + (TA)n Simple_repeat Simple_repeat 1 40 0 3679 133 28 0 chr6 37514860 37515431 -151764123 - Harlequin LTR ERV1 -424 6472 5886 * 14715 83 13 3 chr6 37515425 37517441 -151762113 - Harlequin LTR ERV1 -1509 5387 3352 6743 43 40 9 chr6 37517440 37518413 -151761141 - Harlequin LTR ERV1 -4322 2574 1572 * 6197 70 35 16 chr6 37518406 37519282 -151760272 - Harlequin LTR ERV1 -6003 893 1 * 3971 52 23 0 chr6 37519282 37519761 -151759793 - LTR2B LTR ERV1 0 490 1 444 165 0 0 chr6 37519807 37519886 -151759668 + L1PA15 LINE L1 6051 6129 -36 2348 113 0 0 chr6 37519896 37520205 -151759349 + AluSx SINE Alu 1 309 -3 2211 86 31 7 chr6 37520403 37520695 -151758859 - AluSx SINE Alu -13 299 1 558 167 0 0 chr6 37520699 37520801 -151758753 - L1PA15 LINE L1 -13 6152 6051 190 244 67 0 chr6 37520839 37520884 -151758670 - L2 LINE L2 -4 3268 3221 2439 71 0 3 chr6 37521069 37521363 -151758191 - AluY SINE Alu -16 295 3 2149 123 3 26 chr6 37521376 37521685 -151757869 - AluY SINE Alu -9 302 1 1075 109 0 27 chr6 37521685 37521821 -151757733 - AluSq/x SINE Alu -179 134 1 2209 110 3 0 chr6 37521842 37522133 -151757421 - AluSp SINE Alu -19 294 3 77 17 0 26 chr6 37522136 37522204 -151757350 + AT_rich Low_complexity Low_complexity 1 69 -45 1286 78 6 0 chr6 37522204 37522371 -151757183 - L1PA8 LINE L1 -11 6161 5994 1900 144 35 3 chr6 37522373 37522657 -151756897 - AluSx SINE Alu -18 294 2 77 17 0 26 chr6 37522657 37522702 -151756852 + AT_rich Low_complexity Low_complexity 70 114 0 896 231 125 3 chr6 37522702 37522883 -151756671 - L1ME2 LINE L1 -2 6162 6004 2265 118 3 0 chr6 37522883 37523189 -151756365 - AluSx SINE Alu -5 307 1 896 231 125 3 chr6 37523189 37523318 -151756236 - L1ME2 LINE L1 -160 6004 5814 1184 124 26 26 chr6 37523327 37523520 -151756034 - AluSc SINE Alu -15 294 102 971 103 0 0 chr6 37523520 37523646 -151755908 + AluSp/q SINE Alu 166 291 -22 593 257 158 0 chr6 37523646 37523798 -151755756 + FRAM SINE Alu 1 40 0 2032 116 14 3 chr6 37523894 37524186 -151755368 - AluSx SINE Alu -14 298 4 2354 90 0 7 chr6 37524231 37524531 -151755023 - AluSg SINE Alu -12 298 1 2558 61 0 0 chr6 37524705 37525002 -151754552 + AluY SINE Alu 1 297 -14 1884 149 20 23 chr6 37525025 37525327 -151754227 - AluSx SINE Alu -11 301 1 2048 129 27 0 chr6 37525349 37525643 -151753911 - AluSq SINE Alu -11 302 1 2130 124 3 10 chr6 37525800 37526107 -151753447 - AluSx SINE Alu -7 305 1 1010 159 0 6 chr6 37526107 37526270 -151753284 - AluSg/x SINE Alu -6 306 145 534 178 8 85 chr6 37526721 37526796 -151752758 + MER5A DNA MER1_type 1 65 -124 2362 82 0 3 chr6 37526796 37527112 -151752442 + AluSq SINE Alu 1 313 0 534 178 8 85 chr6 37527112 37527154 -151752400 + MER5A DNA MER1_type 65 109 -80 443 335 46 57 chr6 37527401 37527682 -151751872 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 37528191 37528229 -151751325 + AT_rich Low_complexity Low_complexity 1 38 0 4104 139 17 124 chr6 37528265 37529810 -151749744 + pTR5 LTR ERV1 744 2606 0 701 109 10 0 chr6 37529851 37529952 -151749602 - FRAM SINE Alu -34 142 41 1985 93 24 0 chr6 37530214 37530505 -151749049 - AluSx SINE Alu -14 298 1 2040 95 7 7 chr6 37531423 37531718 -151747836 - AluSx SINE Alu -17 295 1 1646 155 10 16 chr6 37531750 37532054 -151747500 + AluJb SINE Alu 1 302 -10 189 107 0 0 chr6 37532056 37532084 -151747470 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 2073 107 4 0 chr6 37532176 37532457 -151747097 + AluSq SINE Alu 14 295 -18 1214 224 28 50 chr6 37533162 37533484 -151746070 + MLT1A2 LTR MaLR 56 370 -4 471 192 98 62 chr6 37533562 37533755 -151745799 - L2 LINE L2 0 3313 3114 2066 108 0 0 chr6 37533772 37534049 -151745505 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 37534058 37534082 -151745472 + (TA)n Simple_repeat Simple_repeat 2 25 0 1074 233 158 65 chr6 37534083 37534557 -151744997 - MLT1G1 LTR MaLR -58 495 15 382 265 70 32 chr6 37534564 37534602 -151744952 - L2 LINE L2 -163 3150 3115 2233 104 0 3 chr6 37534602 37534911 -151744643 + AluSc SINE Alu 1 308 -1 382 265 70 32 chr6 37534911 37535057 -151744497 - L2 LINE L2 -198 3115 2959 3883 130 18 12 chr6 37536428 37537026 -151742528 + LTR43 LTR ERV1 1 602 0 39815 10 6 12 chr6 37537026 37537368 -151742186 + LTR43-int LTR ERV1 1 344 -4454 2228 99 0 3 chr6 37537368 37537672 -151741882 - AluSg SINE Alu -6 304 2 39815 10 6 12 chr6 37537672 37538313 -151741241 + LTR43-int LTR ERV1 344 987 -3811 2115 98 7 0 chr6 37538313 37538599 -151740955 + AluSp SINE Alu 5 292 -21 39815 10 6 12 chr6 37538599 37539214 -151740340 + LTR43-int LTR ERV1 987 1604 -3194 2127 110 0 7 chr6 37539214 37539514 -151740040 - AluSx SINE Alu -14 298 1 39815 10 6 12 chr6 37539514 37539801 -151739753 + LTR43-int LTR ERV1 1604 1891 -2907 2349 85 0 0 chr6 37539801 37540107 -151739447 + AluSg SINE Alu 5 310 0 39815 10 6 12 chr6 37540107 37540248 -151739306 + LTR43-int LTR ERV1 1891 2031 -2767 2239 83 0 0 chr6 37540248 37540537 -151739017 + AluSg SINE Alu 1 289 -21 39815 10 6 12 chr6 37540537 37540602 -151738952 + LTR43-int LTR ERV1 2031 2095 -2703 2004 108 4 0 chr6 37540602 37540880 -151738674 + AluSx SINE Alu 34 312 0 39815 10 6 12 chr6 37540880 37542436 -151737118 + LTR43-int LTR ERV1 2095 3659 -1139 199 232 58 43 chr6 37542436 37542505 -151737049 + L2 LINE L2 1720 1789 -1525 39815 10 6 12 chr6 37542505 37542717 -151736837 + LTR43-int LTR ERV1 3659 3871 -927 2295 89 7 0 chr6 37542717 37543019 -151736535 + AluSc SINE Alu 1 304 -5 39815 10 6 12 chr6 37543019 37543643 -151735911 + LTR43-int LTR ERV1 3871 4531 -267 1360 110 9 37 chr6 37543643 37543861 -151735693 + AluSg/x SINE Alu 85 296 -16 2621 0 0 0 chr6 37543862 37544139 -151735415 + LTR43-int LTR ERV1 4522 4798 0 4283 102 3 26 chr6 37544139 37544755 -151734799 + LTR43 LTR ERV1 1 602 0 812 154 21 14 chr6 37544784 37544927 -151734627 + L1MC3 LINE L1 6698 6841 -944 1592 90 0 5 chr6 37544931 37545142 -151734412 + AluSg SINE Alu 3 212 -98 926 176 47 59 chr6 37545149 37545278 -151734276 + L1M4 LINE L1 4531 4657 -1489 2345 69 26 0 chr6 37545278 37545582 -151733972 + AluSq SINE Alu 1 312 -1 926 176 47 59 chr6 37545582 37545708 -151733846 + L1M4 LINE L1 4657 4783 -1363 * 3268 138 65 95 chr6 37545698 37545860 -151733694 + L1MA8 LINE L1 5552 5717 -574 585 250 8 0 chr6 37545860 37545992 -151733562 - FLAM_A SINE Alu 0 133 1 3268 138 65 95 chr6 37545992 37546331 -151733223 + L1MA8 LINE L1 5717 6065 -226 2023 98 9 35 chr6 37546331 37546646 -151732908 + AluSx SINE Alu 1 307 -5 1646 142 41 8 chr6 37546651 37546918 -151732636 - AluSx SINE Alu -36 276 1 3268 138 65 95 chr6 37546918 37547169 -151732385 + L1MA8 LINE L1 6069 6288 -3 827 157 79 6 chr6 37547181 37547359 -151732195 + L1M4 LINE L1 4762 4952 -1194 904 223 44 23 chr6 37547776 37548082 -151731472 - MSTD LTR MaLR -8 388 16 4354 87 2 0 chr6 37548082 37548635 -151730919 + MER41A LTR ERV1 1 554 0 2064 95 30 3 chr6 37548666 37548961 -151730593 - AluSp SINE Alu -10 303 1 2516 124 136 69 chr6 37549261 37549768 -151729786 + LTR10B LTR ERV1 1 541 -6 2054 129 0 3 chr6 37549794 37550105 -151729449 - AluSg SINE Alu 0 310 1 1913 91 94 0 chr6 37550107 37550383 -151729171 - AluSq SINE Alu -11 302 1 1313 183 91 112 chr6 37550420 37550895 -151728659 - MER4C LTR ERV1 0 465 1 923 229 10 0 chr6 37550899 37551100 -151728454 - MER4C-int LTR ERV1 -1 6597 6395 266 246 33 57 chr6 37551129 37551251 -151728303 - MER4C-int LTR ERV1 -170 6428 6310 386 228 150 0 chr6 37551255 37551382 -151728172 - MER4C LTR ERV1 -205 260 158 5630 116 45 42 chr6 37551432 37551820 -151727734 - LTR49-int LTR ERV1 -520 5811 5426 2046 102 7 3 chr6 37551820 37552114 -151727440 - AluSp SINE Alu -18 295 1 5630 116 45 42 chr6 37552114 37552570 -151726984 - LTR49-int LTR ERV1 -905 5426 4961 2205 102 0 0 chr6 37552570 37552873 -151726681 + AluSg SINE Alu 1 303 -7 5630 116 45 42 chr6 37552873 37553064 -151726490 - LTR49-int LTR ERV1 -1370 4961 4772 1983 104 7 7 chr6 37553065 37553372 -151726182 + AluSg SINE Alu 1 307 0 820 184 18 64 chr6 37553374 37553592 -151725962 - LTR49-int LTR ERV1 -1969 2911 2704 1727 100 0 4 chr6 37553607 37553846 -151725708 - AluSc SINE Alu -71 238 1 1068 216 85 97 chr6 37553846 37554406 -151725148 - LTR49-int LTR ERV1 -2614 2266 1700 2356 93 0 0 chr6 37554406 37554716 -151724838 + AluSg SINE Alu 1 310 0 1068 216 85 97 chr6 37554716 37555005 -151724549 - LTR49-int LTR ERV1 -3180 1700 1001 2168 74 25 3 chr6 37555083 37555367 -151724187 - AluSc SINE Alu -19 290 1 608 148 87 54 chr6 37555379 37555528 -151724026 - LTR49-int LTR ERV1 -5184 1147 994 251 135 115 19 chr6 37555538 37555590 -151723964 - LTR49 LTR ERV1 -276 319 263 3355 78 41 0 chr6 37556208 37556643 -151722911 + MLT2A2 LTR ERVL 1 453 0 2100 104 3 0 chr6 37556830 37557128 -151722426 - AluSp SINE Alu -14 299 1 290 348 0 0 chr6 37557991 37558080 -151721474 - MER82 DNA MER2_type -61 592 504 2280 74 14 0 chr6 37558421 37558717 -151720837 - AluY SINE Alu -11 300 1 8657 219 48 25 chr6 37558717 37559564 -151719990 - HERV3 LTR ERV1 -1084 7342 6516 2443 43 0 13 chr6 37559564 37559866 -151719688 - AluY SINE Alu -13 298 1 8657 219 48 25 chr6 37559866 37560846 -151718708 - HERV3 LTR ERV1 -1910 6516 5469 1123 178 12 89 chr6 37560847 37560968 -151718586 - LTR61 LTR ERV1 -329 266 174 2219 90 0 0 chr6 37560968 37561257 -151718297 + AluY SINE Alu 1 289 -22 1123 178 12 89 chr6 37561257 37561393 -151718161 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 37561393 37561417 -151718137 + (TTA)n Simple_repeat Simple_repeat 1 24 0 983 313 44 21 chr6 37561548 37561982 -151717572 + LTR33 LTR ERVL 10 453 -68 2154 93 3 0 chr6 37561990 37562279 -151717275 + AluSp SINE Alu 7 296 -17 228 91 0 0 chr6 37562280 37562313 -151717241 + LTR33 LTR ERVL 485 517 -4 2112 99 17 3 chr6 37563006 37563308 -151716246 - AluSq SINE Alu -7 306 1 537 130 98 0 chr6 37563701 37563824 -151715730 + L1MB7 LINE L1 6037 6171 -13 517 267 144 25 chr6 37563837 37564278 -151715276 + L1ME3A LINE L1 5434 5937 -233 557 234 22 54 chr6 37564745 37564929 -151714625 + MER3 DNA MER1_type 4 181 -28 703 132 9 9 chr6 37564946 37565060 -151714494 - MER9 LTR ERVK 0 511 398 3669 98 8 6 chr6 37565062 37565575 -151713979 - HERVK9 LTR ERVK -821 5095 4582 1833 70 4 0 chr6 37565574 37565804 -151713750 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 80 4 10 chr6 37565805 37568550 -151711004 - HERVK9 LTR ERVK -3131 2785 1 3685 113 0 6 chr6 37568550 37569064 -151710490 - MER9 LTR ERVK 0 511 1 402 74 0 0 chr6 37569373 37569427 -151710127 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1633 108 0 0 chr6 37569429 37569661 -151709893 - AluSg/x SINE Alu -15 297 66 2068 98 37 0 chr6 37569887 37570183 -151709371 + AluSx SINE Alu 1 307 -5 890 174 6 0 chr6 37570245 37570406 -151709148 - FRAM SINE Alu -15 161 1 23 0 0 0 chr6 37570736 37570759 -151708795 + AT_rich Low_complexity Low_complexity 1 23 0 1972 144 7 0 chr6 37572494 37572824 -151706730 + AluSx SINE Alu 1 312 0 213 313 89 16 chr6 37572876 37573035 -151706519 + MIR SINE MIR 21 201 -61 1895 144 0 7 chr6 37573110 37573408 -151706146 - AluSq SINE Alu -17 296 1 2238 154 21 5 chr6 37573821 37574205 -151705349 - MLT1B LTR MaLR 0 390 1 720 64 0 0 chr6 37574230 37574324 -151705230 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2157 120 0 0 chr6 37574336 37574644 -151704910 - AluSx SINE Alu -4 308 1 598 286 40 0 chr6 37575684 37575859 -151703695 + MLT1G1 LTR MaLR 11 192 -403 1652 186 73 13 chr6 37575984 37576463 -151703091 - L1M4 LINE L1 -3828 3020 2513 1362 243 48 6 chr6 37576469 37576802 -151702752 - MLT2C2 LTR ERVL -116 348 2 3703 211 18 38 chr6 37576805 37577237 -151702317 - ERVL-C2 LTR ERVL -7 5757 5350 1466 190 7 18 chr6 37577237 37577550 -151702004 - AluJb SINE Alu 0 316 7 3703 211 18 38 chr6 37577550 37578002 -151701552 - ERVL-C2 LTR ERVL -414 5350 4890 14322 194 14 17 chr6 37578004 37581776 -151697778 + L1PA12 LINE L1 1328 5902 -1682 700 268 126 0 chr6 37581775 37581965 -151697589 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 37582157 37582250 -151697304 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 37582263 37582462 -151697092 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 37582621 37582884 -151696670 + MLT2D LTR ERVL 1 264 -150 1416 224 6 54 chr6 37582886 37583235 -151696319 + MER21B-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 37583235 37583372 -151696182 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 37583375 37583450 -151696104 + MER21B-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 37583456 37583585 -151695969 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 37583585 37583916 -151695638 + MER21B-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 37583916 37584691 -151694863 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 37584691 37584943 -151694611 + MER21B-int LTR ERV1 3062 3312 -879 2455 204 39 16 chr6 37585042 37585606 -151693948 + MER21B-int LTR ERV1 3463 4039 -152 41510 71 4 7 chr6 37585621 37585995 -151693559 - L1PA6 LINE L1 -4 6150 5777 2388 88 3 3 chr6 37585995 37586301 -151693253 - AluY SINE Alu -5 306 1 41510 71 4 7 chr6 37586301 37592079 -151687475 - L1PA6 LINE L1 -377 5777 11 1569 217 3 3 chr6 37592182 37592477 -151687077 + AluJo SINE Alu 1 295 -17 1768 247 4 43 chr6 37592535 37593000 -151686554 + MER21B LTR ERV1 19 465 -398 617 270 133 19 chr6 37593001 37593320 -151686234 + MSTD LTR MaLR 1 348 -17 1895 146 8 62 chr6 37593331 37593687 -151685867 + MER1B DNA MER1_type 1 337 0 1503 174 16 86 chr6 37593723 37594314 -151685240 + MER4A LTR ERV1 1 465 0 873 256 51 33 chr6 37594327 37594600 -151684954 + MER21B LTR ERV1 505 782 -81 4777 60 12 14 chr6 37594631 37595666 -151683888 - MER11A LTR ERVK 0 1266 1 3216 127 20 49 chr6 37596294 37596924 -151682630 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 37597048 37597138 -151682416 - LTR19C LTR ERV1 0 779 686 1616 116 10 93 chr6 37597139 37597440 -151682114 - LTR9 LTR ERV1 -336 276 1 458 286 21 84 chr6 37597445 37597732 -151681822 + LTR67 LTR ERVL 185 453 -104 267 266 64 11 chr6 37598221 37598315 -151681239 + MER5A DNA MER1_type 4 102 -87 1786 252 100 26 chr6 37598418 37599483 -151680071 + L2 LINE L2 2107 3252 -61 950 316 46 17 chr6 37604949 37605540 -151674014 - L1MEc LINE L1 -4155 2241 1634 261 0 0 0 chr6 37605564 37605593 -151673961 + (T)n Simple_repeat Simple_repeat 1 29 0 222 271 31 21 chr6 37605749 37605845 -151673709 + C-rich Low_complexity Low_complexity 4 100 0 1930 243 60 39 chr6 37605869 37606532 -151673022 - L1ME1 LINE L1 -112 6054 5378 255 305 31 31 chr6 37606553 37606681 -151672873 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 37606689 37606829 -151672725 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 37606896 37607025 -151672529 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 37608286 37608452 -151671102 + A-rich Low_complexity Low_complexity 1 158 0 5240 97 21 3 chr6 37610873 37611602 -151667952 + L1PA8A LINE L1 5387 6128 -3 872 87 10 1 chr6 37611610 37611739 -151667815 + L1PA13 LINE L1 5655 5790 -373 2873 70 0 41 chr6 37613032 37613447 -151666107 + L1PA13 LINE L1 5766 6163 0 999 291 54 42 chr6 37613649 37614168 -151665386 + L1MEc LINE L1 1516 2040 -4356 342 92 46 15 chr6 37614181 37614246 -151665308 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 37614246 37614281 -151665273 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 37614570 37614863 -151664691 + AluJo SINE Alu 1 289 -23 1833 54 13 5 chr6 37615167 37615391 -151664163 - AluY SINE Alu -85 226 1 948 212 45 74 chr6 37616132 37616551 -151663003 - L1MC5 LINE L1 -470 7491 7085 697 271 174 12 chr6 37616596 37616924 -151662630 + L1ME3A LINE L1 5615 5995 -175 394 285 53 58 chr6 37620642 37621018 -151658536 - L1ME LINE L1 -4863 1679 1306 297 343 17 42 chr6 37621004 37621240 -151658314 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 37621652 37621732 -151657822 - L1ME LINE L1 -5937 697 613 1757 177 0 7 chr6 37621897 37622191 -151657363 + AluJb SINE Alu 1 292 -20 426 20 0 0 chr6 37622825 37622876 -151656678 + (TG)n Simple_repeat Simple_repeat 1 51 0 593 288 82 29 chr6 37622940 37623265 -151656289 + MERVL LTR ERVL 3330 3633 -2021 450 326 34 17 chr6 37623305 37623538 -151656016 + MERVL LTR ERVL 3739 3975 -1789 422 299 112 74 chr6 37623895 37624531 -151655023 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 37625225 37625495 -151654059 + MIR SINE MIR 11 262 0 650 216 40 61 chr6 37626920 37627198 -151652356 + L1MB8 LINE L1 4140 4411 -1735 1969 204 18 26 chr6 37627200 37627691 -151651863 + L1MB8 LINE L1 4806 5292 -854 264 57 19 38 chr6 37627691 37627744 -151651810 + (TAA)n Simple_repeat Simple_repeat 3 54 0 3195 211 62 17 chr6 37627752 37628520 -151651034 + L1MB8 LINE L1 5360 6162 -16 2723 201 8 4 chr6 37629386 37629884 -151649670 + MLT1D LTR MaLR 1 500 -5 321 261 11 23 chr6 37630178 37630266 -151649288 - MLT2E LTR ERVL -510 118 32 4415 74 2 2 chr6 37630537 37631079 -151648475 - L1PA8 LINE L1 -2 6170 5629 1036 365 50 23 chr6 37632251 37633443 -151646111 + MERVL LTR ERVL 3792 5068 -696 22 35 0 0 chr6 37633566 37633595 -151645959 + AT_rich Low_complexity Low_complexity 1 29 0 4854 98 29 26 chr6 37633660 37634332 -151645222 - L1PB2 LINE L1 0 6151 5475 2207 112 0 0 chr6 37634332 37634626 -151644928 - AluY SINE Alu -17 294 1 4854 98 29 26 chr6 37634626 37634670 -151644884 - L1PB2 LINE L1 -676 5475 5433 249 236 36 0 chr6 37634677 37634732 -151644822 - L2 LINE L2 -3 3310 3254 199 366 72 27 chr6 37634807 37635279 -151644275 - L2 LINE L2 -222 3050 2554 1574 211 162 41 chr6 37636177 37636665 -151642889 + MLT1E LTR MaLR 43 589 -4 632 250 118 5 chr6 37637345 37637549 -151642005 + MIR SINE MIR 3 229 -33 229 145 0 58 chr6 37637765 37637834 -151641720 + (CATA)n Simple_repeat Simple_repeat 4 68 0 231 330 0 11 chr6 37637835 37637923 -151641631 + (CA)n Simple_repeat Simple_repeat 2 88 0 2801 29 0 0 chr6 37638414 37638725 -151640829 + AluY SINE Alu 1 311 0 327 96 0 0 chr6 37639090 37639142 -151640412 + (GGA)n Simple_repeat Simple_repeat 1 52 0 353 313 173 0 chr6 37640946 37641154 -151638400 + MIR SINE MIR 8 251 -11 266 328 64 45 chr6 37642208 37642381 -151637173 + L1M4 LINE L1 4097 4265 -1881 342 45 0 0 chr6 37642381 37642425 -151637129 + (TA)n Simple_repeat Simple_repeat 2 45 0 2175 36 0 16 chr6 37642425 37642678 -151636876 - AluY SINE Alu -6 305 57 266 328 64 45 chr6 37642678 37643220 -151636334 + L1M4 LINE L1 4264 4827 -1319 280 298 133 26 chr6 37643500 37643651 -151635903 - ERVL LTR ERVL -3801 1963 1797 223 269 121 51 chr6 37643926 37644088 -151635466 + MER5A DNA MER1_type 2 189 0 488 288 17 28 chr6 37644099 37644276 -151635278 - MER5B DNA MER1_type -3 175 1 338 260 54 39 chr6 37644439 37644643 -151634911 - LTR33 LTR ERVL -312 209 3 249 234 16 0 chr6 37644646 37644710 -151634844 + L1ME3 LINE L1 4093 4157 -1989 298 272 151 20 chr6 37644716 37645021 -151634533 + L1ME3 LINE L1 4259 4603 -1543 566 123 108 15 chr6 37645158 37645288 -151634266 + L1MB8 LINE L1 6028 6169 -9 628 313 88 25 chr6 37645296 37645775 -151633779 + L1ME3 LINE L1 5429 5937 -225 632 224 12 53 chr6 37646254 37646424 -151633130 + MER3 DNA MER1_type 19 181 -28 449 254 8 17 chr6 37647123 37647241 -151632313 - MIR SINE MIR -18 244 128 876 128 43 7 chr6 37647599 37647740 -151631814 - AluJo SINE Alu -45 267 122 2571 129 26 0 chr6 37649377 37649757 -151629797 - MLT1B LTR MaLR 0 390 1 618 221 47 47 chr6 37650801 37650973 -151628581 + MLT1G1 LTR MaLR 11 182 -413 1443 172 109 62 chr6 37651107 37651189 -151628365 - L1M4 LINE L1 -3828 2554 2477 2143 117 0 7 chr6 37651189 37651487 -151628067 - AluSg SINE Alu -14 296 1 1443 172 109 62 chr6 37651487 37651895 -151627659 - L1M4 LINE L1 -3905 2477 2043 1308 253 8 4 chr6 37651896 37652235 -151627319 - MLT2C1 LTR ERVL -99 298 1 3006 205 34 57 chr6 37652242 37652657 -151626897 - ERVL-C1 LTR ERVL -16 5748 5357 1603 179 11 21 chr6 37652657 37652976 -151626578 - AluJb SINE Alu 0 316 1 3006 205 34 57 chr6 37652976 37653334 -151626220 - ERVL-C1 LTR ERVL -407 5357 4992 1812 178 49 40 chr6 37653334 37653802 -151625752 + L1P3 LINE L1 1328 2505 -5079 * 9397 204 7 9 chr6 37653801 37655712 -151623842 + L1P3 LINE L1 2733 4638 -2946 2208 100 10 3 chr6 37655713 37656012 -151623542 - AluSq SINE Alu -12 301 1 6365 96 34 8 chr6 37656013 37656141 -151623413 + L1PA13 LINE L1 4603 4726 -1437 2120 128 0 7 chr6 37656141 37656438 -151623116 - AluSg SINE Alu -13 297 3 6365 96 34 8 chr6 37656438 37657837 -151621717 + L1PA13 LINE L1 4726 6159 -4 525 230 18 0 chr6 37657837 37657950 -151621604 - ERVL LTR ERVL -3545 2219 2105 895 189 27 0 chr6 37657971 37658156 -151621398 - L1 LINE L1 -2688 4160 3971 1972 181 41 102 chr6 37658169 37658721 -151620833 - LTR10E LTR ERV1 -42 591 79 1948 100 3 63 chr6 37658721 37659050 -151620504 - AluSg SINE Alu 0 311 1 1972 181 41 102 chr6 37659050 37659125 -151620429 - LTR10E LTR ERV1 -554 79 1 13168 266 70 72 chr6 37659128 37659688 -151619866 - HERVI LTR ERV1 -1 7784 7224 5488 73 15 19 chr6 37659688 37660442 -151619112 + SVA Other Other 635 1385 -1 13168 266 70 72 chr6 37660442 37660501 -151619053 - HERVI LTR ERV1 -561 7224 7166 2103 101 47 0 chr6 37660501 37660779 -151618775 - AluSg SINE Alu -19 291 1 13168 266 70 72 chr6 37660779 37667827 -151611727 - HERVI LTR ERV1 -619 7166 26 2039 173 51 103 chr6 37667868 37668480 -151611074 - LTR10E LTR ERV1 -42 591 12 8408 214 36 21 chr6 37668490 37669638 -151609916 - L1 LINE L1 -2873 3975 2845 3980 98 2 4 chr6 37669638 37670150 -151609404 - MER9 LTR ERVK 0 511 1 8408 214 36 21 chr6 37670150 37670596 -151608958 - L1 LINE L1 -4003 2845 2407 2186 113 0 31 chr6 37670596 37670915 -151608639 + AluSc SINE Alu 1 309 0 8408 214 36 21 chr6 37670915 37672338 -151607216 - L1 LINE L1 -4441 2407 913 2038 128 3 3 chr6 37672471 37672792 -151606762 - AluSg SINE Alu 0 321 1 359 186 44 62 chr6 37672810 37672923 -151606631 + L1MA7 LINE L1 6178 6288 -3 245 283 141 16 chr6 37672939 37673123 -151606431 - L1M4c LINE L1 -4631 1751 1519 7782 48 2 0 chr6 37673316 37674448 -151605106 + L1PA5 LINE L1 5020 6153 -1 892 282 8 8 chr6 37674448 37674700 -151604854 + MLT2D LTR ERVL 14 265 -149 1381 223 6 57 chr6 37674701 37675051 -151604503 + MER21B-int LTR ERV1 2341 2672 -1519 624 218 14 27 chr6 37675051 37675198 -151604356 + MSTA LTR MaLR 1 145 -283 348 260 0 0 chr6 37675198 37675271 -151604283 + MER21B-int LTR ERV1 2667 2739 -1452 486 266 63 0 chr6 37675277 37675420 -151604134 + FRAM SINE Alu 16 167 -9 1911 261 37 37 chr6 37675430 37675742 -151603812 + MER21B-int LTR ERV1 2742 3056 -1135 4558 165 23 20 chr6 37675742 37676523 -151603031 - LTR39 LTR ERV1 0 783 1 1911 261 37 37 chr6 37676523 37676782 -151602772 + MER21B-int LTR ERV1 3055 3313 -878 2613 187 41 19 chr6 37676883 37677449 -151602105 + MER21B-int LTR ERV1 3463 4040 -151 1600 215 3 0 chr6 37677546 37677844 -151601710 + AluJo SINE Alu 1 299 -13 1756 246 11 45 chr6 37677895 37678367 -151601187 + MER21B LTR ERV1 10 465 -398 643 231 83 30 chr6 37678368 37678686 -151600868 + MSTD LTR MaLR 1 348 -17 1929 143 9 57 chr6 37678697 37679047 -151600507 + MER1B DNA MER1_type 1 333 -6 1443 191 19 78 chr6 37679082 37679665 -151599889 + MER4A LTR ERV1 1 465 0 828 268 52 29 chr6 37679678 37679950 -151599604 + MER21B LTR ERV1 505 782 -81 23 0 0 0 chr6 37680211 37680234 -151599320 + AT_rich Low_complexity Low_complexity 1 23 0 3103 142 22 54 chr6 37680618 37681211 -151598343 - MER4B LTR ERV1 -36 574 1 570 279 50 81 chr6 37681240 37681338 -151598216 + LTR67 LTR ERVL 82 182 -375 3001 157 37 55 chr6 37681338 37681961 -151597593 - LTR9 LTR ERV1 0 612 1 570 279 50 81 chr6 37681961 37682246 -151597308 + LTR67 LTR ERVL 182 453 -104 243 325 78 26 chr6 37682579 37682733 -151596821 + MER5B DNA MER1_type 1 162 -16 315 261 68 0 chr6 37682757 37682845 -151596709 + MER5A DNA MER1_type 9 102 -87 181 169 92 62 chr6 37682887 37682952 -151596602 - L3 LINE CR1 -460 1117 1051 * 2266 261 88 20 chr6 37682925 37684083 -151595471 + L2 LINE L2 2074 3311 -2 238 323 115 15 chr6 37684095 37684225 -151595329 - L3 LINE CR1 -550 1027 885 215 182 0 36 chr6 37687354 37687409 -151592145 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 884 312 64 17 chr6 37689421 37690001 -151589553 - L1MEc LINE L1 -4155 2241 1635 331 308 45 68 chr6 37690024 37690245 -151589309 - L1ME1 LINE L1 0 6166 5951 1694 266 59 38 chr6 37690310 37690973 -151588581 - L1ME1 LINE L1 -112 6448 5772 238 282 70 28 chr6 37690994 37691136 -151588418 - L1ME1 LINE L1 -1843 4697 4550 762 171 49 0 chr6 37691144 37691267 -151588287 - FLAM_C SINE Alu -4 129 1 5915 90 31 1 chr6 37691363 37692200 -151587354 + L1PA8A LINE L1 5267 6128 -3 3468 76 0 34 chr6 37692228 37692726 -151586828 + L1PA13 LINE L1 5683 6163 0 328 247 47 35 chr6 37692736 37692906 -151586648 - L1ME1 LINE L1 -3898 2642 2471 883 301 52 35 chr6 37692919 37693441 -151586113 + L1MEc LINE L1 1515 2045 -4351 384 162 0 0 chr6 37693450 37693518 -151586036 + L1P LINE L1 3148 3215 -2931 1270 224 6 32 chr6 37693805 37694117 -151585437 + AluJo SINE Alu 1 304 -8 21 0 0 0 chr6 37694143 37694164 -151585390 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr6 37694335 37694367 -151585187 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 436 246 160 37 chr6 37694402 37694589 -151584965 - HAL1 LINE L1 -2 2505 2296 664 247 185 15 chr6 37694603 37694992 -151584562 - HAL1 LINE L1 -17 2490 2036 600 213 8 8 chr6 37695088 37695210 -151584344 - FLAM_A SINE Alu -11 122 1 986 217 49 4 chr6 37695265 37695509 -151584045 - HAL1 LINE L1 -723 1784 1530 1514 166 53 25 chr6 37695512 37695795 -151583759 - AluJb SINE Alu -21 291 1 402 250 164 0 chr6 37695875 37696003 -151583551 + L2 LINE L2 2499 2647 -667 1854 116 14 3 chr6 37696087 37696371 -151583183 + AluSq SINE Alu 11 297 -16 389 340 58 0 chr6 37696762 37696950 -151582604 - L1ME LINE L1 -398 5772 5574 805 236 39 63 chr6 37698783 37699194 -151580360 - L1MC5 LINE L1 -476 7485 7085 440 263 130 31 chr6 37699221 37699725 -151579829 + L1ME3A LINE L1 5596 6161 -9 799 268 101 22 chr6 37700011 37700377 -151579177 + ERVL LTR ERVL 3880 4274 -1490 4457 196 16 46 chr6 37700686 37701018 -151578536 + L1P LINE L1 3656 3997 -2149 807 112 0 0 chr6 37701018 37701125 -151578429 + U6 snRNA snRNA 1 107 0 4457 196 16 46 chr6 37701125 37701826 -151577728 + L1P LINE L1 3997 4657 -1489 29 0 0 0 chr6 37701842 37701871 -151577683 + AT_rich Low_complexity Low_complexity 1 29 0 31 82 0 0 chr6 37702533 37702606 -151576948 + AT_rich Low_complexity Low_complexity 1 73 0 1303 140 19 1 chr6 37702606 37702886 -151576668 + L1P LINE L1 4643 4938 -1208 * 3548 241 40 25 chr6 37702868 37704004 -151575550 + L1M4c LINE L1 742 1895 -4489 2173 183 19 19 chr6 37704004 37704436 -151575118 + L1MB5 LINE L1 5743 6174 0 7703 64 32 4 chr6 37704557 37705537 -151574017 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 37706153 37706199 -151573355 + (CATA)n Simple_repeat Simple_repeat 2 47 0 960 196 0 0 chr6 37706417 37706575 -151572979 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 37706605 37706640 -151572914 + AT_rich Low_complexity Low_complexity 1 35 0 506 307 109 51 chr6 37706795 37707209 -151572345 - L1ME4a LINE L1 -130 5991 5554 1828 277 17 8 chr6 37707211 37708000 -151571554 - ERVL-C1 LTR ERVL -4812 952 28 317 254 68 34 chr6 37708391 37708509 -151571045 + MER58B DNA MER1_type 220 341 0 487 172 40 30 chr6 37709078 37709177 -151570377 + MIR SINE MIR 40 139 -123 287 67 44 0 chr6 37710503 37710548 -151569006 + CT-rich Low_complexity Low_complexity 2 48 0 31 44 0 0 chr6 37711902 37711947 -151567607 + AT_rich Low_complexity Low_complexity 1 45 0 259 125 0 0 chr6 37712429 37712469 -151567085 - ERVL-C1 LTR ERVL -5614 40 1 1267 219 52 7 chr6 37712471 37712509 -151567045 - MLT2C1 LTR ERVL -2 395 360 414 0 0 0 chr6 37712509 37712555 -151566999 + (TG)n Simple_repeat Simple_repeat 2 47 0 1267 219 52 7 chr6 37712555 37712785 -151566769 - MLT2C1 LTR ERVL -37 360 115 2275 213 73 28 chr6 37713703 37714281 -151565273 - MLT1E3 LTR MaLR 0 624 21 573 269 7 14 chr6 37714507 37714648 -151564906 - MLT1F1 LTR MaLR -8 559 420 * 586 340 32 3 chr6 37714639 37714948 -151564606 - LTR16B LTR ERVL -52 412 95 1323 319 53 36 chr6 37714988 37716021 -151563533 - ERVL LTR ERVL -433 5221 4171 1902 319 74 49 chr6 37716261 37717620 -151561934 - ERVL LTR ERVL -2238 3526 2134 997 314 41 7 chr6 37717647 37718061 -151561493 - ERVL LTR ERVL -2966 2030 1603 351 329 132 8 chr6 37718462 37718818 -151560736 - L1ME3A LINE L1 -211 5951 5552 458 253 207 6 chr6 37718856 37719030 -151560524 + L2 LINE L2 2042 2250 -1064 535 227 61 119 chr6 37719063 37719341 -151560213 + L1MC4a LINE L1 5513 5774 -2034 283 254 42 0 chr6 37719357 37719428 -151560126 + 7SLRNA srpRNA srpRNA 234 307 -13 311 307 18 37 chr6 37719522 37719685 -151559869 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 37719847 37719878 -151559676 + AT_rich Low_complexity Low_complexity 1 31 0 579 170 38 0 chr6 37720632 37720738 -151558816 + MER5A DNA MER1_type 3 112 -77 741 41 0 0 chr6 37720780 37720877 -151558677 + (TC)n Simple_repeat Simple_repeat 2 98 0 4658 70 0 0 chr6 37721192 37721761 -151557793 - MER61E LTR ERV1 0 569 1 321 283 44 88 chr6 37721761 37721920 -151557634 + L2 LINE L2 3162 3313 0 2117 112 7 3 chr6 37722913 37723216 -151556338 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 37723231 37723259 -151556295 + AT_rich Low_complexity Low_complexity 1 28 0 331 251 30 90 chr6 37723665 37723769 -151555785 - L1ME LINE L1 -412 5709 5617 2236 98 0 0 chr6 37723769 37724064 -151555490 - AluSg SINE Alu -15 295 1 331 251 30 90 chr6 37724064 37724126 -151555428 - L1ME LINE L1 -504 5617 5553 2432 71 0 0 chr6 37724126 37724435 -151555119 + AluY SINE Alu 1 309 -2 477 302 91 48 chr6 37724458 37725187 -151554367 - L2 LINE L2 -3 3310 2514 1362 172 29 49 chr6 37726233 37726385 -151553169 + AluJo SINE Alu 1 145 -167 435 19 0 0 chr6 37726385 37726437 -151553117 + (CA)n Simple_repeat Simple_repeat 2 53 0 1362 172 29 49 chr6 37726437 37726592 -151552962 + AluJo SINE Alu 145 302 -10 2470 172 114 53 chr6 37727273 37727958 -151551596 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 37728539 37728563 -151550991 + AT_rich Low_complexity Low_complexity 1 24 0 833 203 0 0 chr6 37728563 37728721 -151550833 - FRAM SINE Alu -8 168 11 1944 174 126 20 chr6 37728770 37729230 -151550324 + LTR22 LTR ERVK 1 509 0 1840 126 0 0 chr6 37729370 37729631 -151549923 - AluSq SINE Alu -52 261 1 405 331 0 0 chr6 37729745 37729881 -151549673 + L1ME1 LINE L1 6027 6162 -4 400 244 52 113 chr6 37729890 37730120 -151549434 + L1MC4 LINE L1 7762 7977 -65 204 293 9 38 chr6 37730155 37730167 -151549387 + CT-rich Low_complexity Low_complexity 5 16 -91 2514 49 0 0 chr6 37730167 37730474 -151549080 + AluY SINE Alu 1 307 -4 204 293 9 38 chr6 37730474 37730567 -151548987 + CT-rich Low_complexity Low_complexity 16 107 0 2126 73 7 3 chr6 37731266 37731553 -151548001 + AluSp SINE Alu 1 288 -25 1091 146 6 6 chr6 37732428 37732593 -151546961 + FRAM SINE Alu 1 164 -12 602 200 50 61 chr6 37732647 37732827 -151546727 - MER5B DNA MER1_type 0 178 1 537 178 9 37 chr6 37732912 37733019 -151546535 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 37733029 37733069 -151546485 + (T)n Simple_repeat Simple_repeat 1 40 0 760 61 31 0 chr6 37733069 37733167 -151546387 - HY3 scRNA scRNA 0 101 1 9988 142 24 16 chr6 37736330 37738150 -151541404 - L1MA3 LINE L1 0 6305 4454 2255 116 3 0 chr6 37738150 37738451 -151541103 - AluSp SINE Alu -11 302 1 9988 142 24 16 chr6 37738451 37739363 -151540191 - L1MA3 LINE L1 -1851 4454 3551 2156 171 144 61 chr6 37739357 37739641 -151539913 - L1MB3 LINE L1 -1 6179 5920 * 2288 104 0 3 chr6 37739641 37739939 -151539615 + AluSq SINE Alu 5 301 -12 2156 171 144 61 chr6 37739939 37740226 -151539328 - L1MB3 LINE L1 -260 5920 5658 231 88 0 0 chr6 37740226 37740260 -151539294 + (TG)n Simple_repeat Simple_repeat 1 34 0 2156 171 144 61 chr6 37740260 37740417 -151539137 - L1MB3 LINE L1 -522 5658 5317 956 244 52 32 chr6 37740430 37740778 -151538776 - L1MB3 LINE L1 -893 5253 4899 373 280 137 11 chr6 37746043 37746225 -151533329 + MIR SINE MIR 19 223 -39 22 0 0 0 chr6 37746259 37746281 -151533273 + AT_rich Low_complexity Low_complexity 1 22 0 2497 67 3 3 chr6 37746293 37746591 -151532963 + AluSc SINE Alu 1 298 -11 2066 135 0 0 chr6 37746591 37746871 -151532683 - AluSx SINE Alu -31 281 1 222 105 0 0 chr6 37746871 37746909 -151532645 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 37746927 37746962 -151532592 + AT_rich Low_complexity Low_complexity 1 35 0 820 283 113 38 chr6 37748079 37748573 -151530981 - HAL1 LINE L1 -5 2502 2046 2180 108 0 3 chr6 37748573 37748860 -151530694 - AluSc SINE Alu -23 286 1 2333 95 10 0 chr6 37748860 37749156 -151530398 - AluSp SINE Alu -14 299 1 820 283 113 38 chr6 37749156 37749314 -151530240 - HAL1 LINE L1 -460 2047 1800 180 280 67 0 chr6 37749363 37749438 -151530116 - MER5A DNA MER1_type -85 104 25 686 209 0 16 chr6 37749468 37749597 -151529957 - AluJb SINE Alu -30 282 156 1783 204 27 77 chr6 37749662 37749732 -151529822 - L1MB2 LINE L1 -1 6170 6098 691 211 0 0 chr6 37749732 37749865 -151529689 + FLAM_C SINE Alu 1 133 0 1783 204 27 77 chr6 37749865 37750315 -151529239 - L1MB2 LINE L1 -73 6098 5676 259 133 0 83 chr6 37750683 37750743 -151528811 + MLT2B3 LTR ERVL 458 546 -8 288 324 74 33 chr6 37750748 37751242 -151528312 - L2 LINE L2 -132 3181 2666 1512 230 27 29 chr6 37751251 37751695 -151527859 - L1MB2 LINE L1 -799 5347 4905 368 176 27 0 chr6 37752622 37752696 -151526858 - MER20 DNA MER1_type -138 81 6 237 284 156 38 chr6 37753104 37753470 -151526084 + L1MC4 LINE L1 7492 7900 -142 215 170 0 19 chr6 37753497 37753550 -151526004 + (CA)n Simple_repeat Simple_repeat 1 52 0 3734 165 23 9 chr6 37753553 37754345 -151525209 - HUERS-P3 LTR ERV1 -8018 901 17 3258 153 16 59 chr6 37754361 37755001 -151524553 - LTR9 LTR ERV1 0 612 1 1018 188 0 6 chr6 37755008 37755184 -151524370 - MER41D LTR ERV1 -336 221 47 1924 148 50 18 chr6 37755194 37755532 -151524022 - L1PB2 LINE L1 -31 6120 5772 407 164 0 0 chr6 37755532 37755605 -151523949 - L1MD2 LINE L1 0 6359 6287 743 174 0 8 chr6 37755605 37755737 -151523817 + AluJo SINE Alu 4 134 -178 1611 197 37 42 chr6 37755737 37756117 -151523437 - L1MD1 LINE L1 -57 6185 5808 4880 193 8 6 chr6 37756126 37757487 -151522067 - L1PA6 LINE L1 -1 6153 4792 1674 216 3 0 chr6 37757486 37757819 -151521735 - L1MB2 LINE L1 -1896 4250 3917 * 2716 94 33 13 chr6 37757832 37758224 -151521330 + MLT2A1 LTR ERVL 1 400 -44 229 55 110 0 chr6 37758224 37758297 -151521257 + (TA)n Simple_repeat Simple_repeat 2 82 0 44 56 0 0 chr6 37758302 37758374 -151521180 + AT_rich Low_complexity Low_complexity 1 72 0 554 91 76 2 chr6 37758401 37758814 -151520740 + (TA)n Simple_repeat Simple_repeat 1 443 0 555 79 83 2 chr6 37758845 37759419 -151520135 + (TA)n Simple_repeat Simple_repeat 1 620 0 201 82 55 27 chr6 37759430 37759503 -151520051 + (TA)n Simple_repeat Simple_repeat 1 75 0 429 90 5 75 chr6 37759514 37759702 -151519852 + (TA)n Simple_repeat Simple_repeat 2 176 0 455 100 11 61 chr6 37759752 37759932 -151519622 + (TA)n Simple_repeat Simple_repeat 1 171 0 277 79 0 63 chr6 37759934 37759997 -151519557 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 619 94 59 12 chr6 37759999 37760743 -151518811 + (TA)n Simple_repeat Simple_repeat 1 778 0 358 91 18 0 chr6 37760743 37760798 -151518756 + MLT2A1 LTR ERVL 389 444 0 43881 74 13 13 chr6 37760798 37766455 -151513099 + HERVL-A1-A1 LTR ERVL 1 5654 0 3005 101 18 40 chr6 37766455 37766909 -151512645 + MLT2A1 LTR ERVL 1 444 0 7756 195 34 9 chr6 37766909 37768696 -151510858 - L1PBa LINE L1 -2234 4628 2793 2092 122 61 19 chr6 37768940 37769300 -151510254 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 37769300 37769974 -151509580 + THE1C-int LTR MaLR 1 656 -924 2414 79 3 0 chr6 37771458 37771749 -151507805 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 37771774 37771815 -151507739 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 37771816 37771887 -151507667 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 212 175 18 53 chr6 37773247 37773304 -151506250 + GA-rich Low_complexity Low_complexity 1 55 0 234 62 0 0 chr6 37773334 37773366 -151506188 + (TG)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37773960 37774097 -151505457 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 37774097 37774128 -151505426 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37774128 37775396 -151504158 - L1M1 LINE L1 -805 5498 4214 2564 168 43 111 chr6 37775399 37776067 -151503487 + MER21B LTR ERV1 218 840 -23 1532 164 8 23 chr6 37776693 37776955 -151502599 - AluJb SINE Alu -54 258 1 1831 181 0 3 chr6 37777156 37777460 -151502094 - AluJb SINE Alu -4 308 6 6347 134 48 57 chr6 37777567 37778134 -151501420 - Tigger3b DNA MER2_type -1797 1231 660 7759 29 6 0 chr6 37778134 37779204 -151500350 - L1PA3 LINE L1 0 6155 5083 6347 134 48 57 chr6 37779204 37779878 -151499676 - Tigger3b DNA MER2_type -2368 660 2 325 409 25 9 chr6 37780087 37780407 -151499147 + L1MEc LINE L1 801 1125 -5997 298 274 24 40 chr6 37780815 37780939 -151498615 + L1MEc LINE L1 1370 1491 -4932 * 345 302 67 38 chr6 37780925 37781269 -151498285 + L1M4 LINE L1 3211 3564 -2582 1628 138 11 0 chr6 37781287 37781547 -151498007 + MER2 DNA MER2_type 1 263 -82 2504 121 14 3 chr6 37781658 37782029 -151497525 + THE1C LTR MaLR 1 375 0 2319 263 90 25 chr6 37782039 37783171 -151496383 + L1M4 LINE L1 3593 4798 -1348 472 170 16 0 chr6 37783186 37783295 -151496259 - L1 LINE L1 -1079 5303 5190 808 226 30 0 chr6 37783296 37783460 -151496094 - FRAM SINE Alu -7 169 1 303 250 11 11 chr6 37783465 37783557 -151495997 - L1 LINE L1 -1191 5191 5100 * 1862 238 63 53 chr6 37783551 37783736 -151495818 - L1M4c LINE L1 -4573 2073 1891 761 138 0 14 chr6 37783736 37783874 -151495680 - L1MB2 LINE L1 -1 6170 6035 1862 238 63 53 chr6 37783874 37784386 -151495168 - L1M4c LINE L1 -4755 1891 1369 851 209 17 12 chr6 37784375 37784626 -151494928 - L1M4c LINE L1 -4719 1926 1303 * 6514 63 10 86 chr6 37784629 37785662 -151493892 - SVA Other Other 0 1386 433 986 96 20 170 chr6 37785679 37787671 -151491883 - SVA Other Other -629 866 433 319 284 167 10 chr6 37787728 37787830 -151491724 + L1MC4 LINE L1 6585 6702 -1340 401 305 0 0 chr6 37787833 37787928 -151491626 - L1MC4 LINE L1 -1339 6703 6609 2250 273 56 68 chr6 37787935 37789171 -151490383 - L1M4c LINE L1 -5320 1222 2 447 274 61 79 chr6 37789170 37789389 -151490165 - L1MEc LINE L1 -4535 1861 1653 * 472 155 52 0 chr6 37789389 37789486 -151490068 + L1MA7 LINE L1 6187 6288 -3 447 274 61 79 chr6 37789486 37789707 -151489847 - L1MEc LINE L1 -4743 1653 1429 817 256 68 8 chr6 37789866 37790116 -151489438 + MLT2D LTR ERVL 1 265 -149 1523 197 6 60 chr6 37790117 37790468 -151489086 + MER21B-int LTR ERV1 2341 2672 -1519 876 120 21 0 chr6 37790468 37790610 -151488944 + MSTA LTR MaLR 1 145 -283 383 219 0 0 chr6 37790610 37790683 -151488871 + MER21B-int LTR ERV1 2667 2739 -1452 363 295 70 0 chr6 37790689 37790818 -151488736 + FRAM SINE Alu 16 153 -13 492 194 22 72 chr6 37790828 37790967 -151488587 + MER21B-int LTR ERV1 2742 2873 -1318 2073 149 0 0 chr6 37790972 37791274 -151488280 + AluSx SINE Alu 1 302 -10 2703 237 62 43 chr6 37791325 37791666 -151487888 + MER21B-int LTR ERV1 3068 3401 -790 198 0 0 0 chr6 37791666 37791688 -151487866 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2703 237 62 43 chr6 37791688 37792301 -151487253 + MER21B-int LTR ERV1 3401 4040 -151 1506 235 0 9 chr6 37792398 37792713 -151486841 + AluJo SINE Alu 1 312 0 1256 261 11 25 chr6 37792749 37793105 -151486449 + MER21B LTR ERV1 2 352 -511 317 183 24 24 chr6 37793624 37793706 -151485848 + MER4C LTR ERV1 65 146 -319 494 337 34 4 chr6 37794521 37794785 -151484769 - LTR16B LTR ERVL -131 333 62 1459 342 40 35 chr6 37794793 37796012 -151483542 - ERVL LTR ERVL -504 5260 3693 * 1660 303 57 38 chr6 37796011 37796855 -151482699 - ERVL LTR ERVL -2240 3524 2665 253 175 0 0 chr6 37796922 37796962 -151482592 - Alu SINE Alu -19 281 242 * 255 125 0 25 chr6 37796953 37796993 -151482561 - AluSg/x SINE Alu -136 164 126 2168 109 6 13 chr6 37796993 37797306 -151482248 - AluSp SINE Alu 0 313 3 1935 293 52 47 chr6 37797317 37798290 -151481264 - ERVL LTR ERVL -2430 2566 1589 1167 321 47 20 chr6 37798346 37798788 -151480766 - ERVL LTR ERVL -3534 1462 998 1943 137 90 29 chr6 37798788 37799131 -151480423 + THE1B LTR MaLR 1 364 0 1167 321 47 20 chr6 37799131 37799282 -151480272 - ERVL LTR ERVL -3998 998 853 295 321 94 54 chr6 37799430 37799707 -151479847 - ERVL LTR ERVL -4444 552 265 636 285 72 93 chr6 37799960 37800123 -151479431 - LTR16B LTR ERVL 0 464 299 1727 134 0 0 chr6 37800123 37800362 -151479192 - AluSx SINE Alu -73 239 1 636 285 72 93 chr6 37800362 37800672 -151478882 - LTR16B LTR ERVL -165 299 1 2077 252 68 45 chr6 37800672 37801441 -151478113 - L2 LINE L2 -1658 1656 871 270 233 122 0 chr6 37801513 37801603 -151477951 - L2 LINE L2 -2411 903 803 229 228 63 0 chr6 37801705 37801784 -151477770 - L2 LINE L2 -2513 801 718 1598 265 72 19 chr6 37801813 37802397 -151477157 - MLT1E2 LTR MaLR -11 615 1 1468 282 105 14 chr6 37802404 37803025 -151476529 - L2 LINE L2 -2620 694 18 1913 131 84 6 chr6 37804252 37804595 -151474959 - Tigger1 DNA MER2_type 0 2418 2049 2242 169 10 5 chr6 37804601 37804998 -151474556 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 37804999 37805037 -151474517 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 231 272 99 0 chr6 37805280 37805361 -151474193 + MIR SINE MIR 112 200 -62 976 143 7 60 chr6 37805634 37805855 -151473699 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 37806281 37806375 -151473179 + (TG)n Simple_repeat Simple_repeat 1 94 0 2609 68 48 0 chr6 37806657 37806993 -151472561 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 37807426 37807451 -151472103 + AT_rich Low_complexity Low_complexity 1 25 0 948 300 40 9 chr6 37807649 37808069 -151471485 + LTR33 LTR ERVL 10 442 -79 805 173 0 0 chr6 37808188 37808315 -151471239 - FLAM_C SINE Alu -16 127 1 2571 63 0 0 chr6 37812763 37813063 -151466491 - AluY SINE Alu -11 300 1 841 203 17 6 chr6 37813521 37813698 -151465856 - MLT1B LTR MaLR 0 390 212 2521 70 0 16 chr6 37813863 37814177 -151465377 + AluY SINE Alu 1 309 -2 2773 149 2 4 chr6 37814514 37814971 -151464583 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 37815168 37815222 -151464332 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2380 54 30 3 chr6 37815281 37815578 -151463976 - AluY SINE Alu -4 307 3 352 332 121 3 chr6 37815600 37815958 -151463596 - L1ME3 LINE L1 -211 5951 5552 371 290 252 5 chr6 37815958 37816172 -151463382 + L2 LINE L2 1984 2250 -1064 491 280 76 9 chr6 37816205 37816416 -151463138 + L1MC4a LINE L1 5513 5737 -2071 378 234 71 59 chr6 37816631 37816870 -151462684 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 37817010 37817054 -151462500 + AT_rich Low_complexity Low_complexity 1 44 0 585 170 38 0 chr6 37817802 37817908 -151461646 + MER5A DNA MER1_type 3 112 -77 297 0 0 0 chr6 37817950 37817983 -151461571 + (TC)n Simple_repeat Simple_repeat 2 34 0 4617 77 0 0 chr6 37818297 37818866 -151460688 - MER61E LTR ERV1 0 569 1 314 342 63 32 chr6 37818867 37819025 -151460529 + L2 LINE L2 3110 3272 0 1454 173 38 63 chr6 37821069 37821225 -151458329 + AluJo SINE Alu 1 146 -166 270 0 0 0 chr6 37821225 37821255 -151458299 + (CA)n Simple_repeat Simple_repeat 2 31 0 1454 173 38 63 chr6 37821255 37821416 -151458138 + AluJo SINE Alu 146 310 -2 2362 175 116 64 chr6 37822105 37822449 -151457105 - LTR8A LTR ERV1 0 727 402 2643 48 0 3 chr6 37822449 37822761 -151456793 + AluY SINE Alu 1 311 0 2362 175 116 64 chr6 37822761 37823107 -151456447 - LTR8A LTR ERV1 -325 402 1 914 192 0 0 chr6 37823708 37823864 -151455690 - FRAM SINE Alu -10 166 11 22 0 0 0 chr6 37824001 37824023 -151455531 + AT_rich Low_complexity Low_complexity 1 22 0 2113 88 0 0 chr6 37824048 37824308 -151455246 - AluSq SINE Alu -53 260 1 422 316 0 0 chr6 37824422 37824555 -151454999 + L1ME1 LINE L1 6027 6159 -7 358 242 33 121 chr6 37824579 37824794 -151454760 + L1MC4 LINE L1 7779 7974 -68 205 329 0 24 chr6 37824833 37824915 -151454639 + CT-rich Low_complexity Low_complexity 2 81 0 2451 57 13 0 chr6 37825612 37825913 -151453641 + AluSp SINE Alu 1 305 -8 196 235 25 74 chr6 37826411 37826492 -151453062 + MIR SINE MIR 22 98 -110 222 326 0 0 chr6 37826731 37826780 -151452774 - L2 LINE L2 -82 3190 3142 973 161 11 33 chr6 37826804 37826984 -151452570 + FRAM SINE Alu 1 176 0 739 251 29 11 chr6 37827043 37827218 -151452336 - MER5B DNA MER1_type 0 178 1 507 161 9 54 chr6 37827298 37827410 -151452144 - L1MB7 LINE L1 -17 6167 6061 2430 81 3 3 chr6 37827419 37827728 -151451826 - AluY SINE Alu 0 311 3 792 79 0 0 chr6 37827753 37827854 -151451700 - HY3 scRNA scRNA 0 101 1 2657 36 13 0 chr6 37829508 37829813 -151449741 - AluY SINE Alu -2 309 1 9459 140 20 12 chr6 37831347 37833101 -151446453 - L1MA3 LINE L1 0 6305 4517 2311 104 3 3 chr6 37833101 37833400 -151446154 + AluSp SINE Alu 1 299 -14 9459 140 20 12 chr6 37833400 37834376 -151445178 - L1MA3 LINE L1 -1788 4517 3551 3265 200 61 56 chr6 37834370 37834997 -151444557 - L1MB2 LINE L1 -4 6167 5544 * 417 20 0 0 chr6 37834997 37835047 -151444507 + (TG)n Simple_repeat Simple_repeat 1 50 0 3265 200 61 56 chr6 37835047 37835308 -151444246 - L1MB2 LINE L1 -627 5544 5286 2505 90 0 0 chr6 37835308 37835619 -151443935 - AluY SINE Alu 0 311 1 3265 200 61 56 chr6 37835619 37835987 -151443567 - L1MB2 LINE L1 -885 5286 4899 2307 141 25 13 chr6 37841146 37841543 -151438011 + LTR3 LTR ERVK 22 423 -9 2154 145 0 0 chr6 37841593 37841904 -151437650 - AluSx SINE Alu -1 311 1 195 114 0 0 chr6 37841904 37841939 -151437615 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 37841967 37841990 -151437564 + AT_rich Low_complexity Low_complexity 1 23 0 203 0 0 36 chr6 37842887 37842915 -151436639 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2583 74 0 3 chr6 37843115 37843427 -151436127 - AluY SINE Alu 0 311 1 689 276 22 65 chr6 37843466 37843821 -151435733 - L1MC5 LINE L1 -519 7442 7103 2294 103 3 0 chr6 37843822 37844124 -151435430 + AluSp SINE Alu 1 303 -10 393 282 110 38 chr6 37844239 37844448 -151435106 + L1ME3A LINE L1 5932 6155 -15 519 323 84 8 chr6 37844746 37845115 -151434439 + MERVL LTR ERVL 3836 4232 -1253 508 319 73 67 chr6 37845213 37845677 -151433877 + L1M4 LINE L1 3427 3893 -2253 2955 124 8 33 chr6 37845762 37845856 -151433698 + L1PA15 LINE L1 5694 5789 -376 2651 64 0 0 chr6 37845856 37846167 -151433387 + AluY SINE Alu 1 311 0 2955 124 8 33 chr6 37846167 37846555 -151432999 + L1PA15 LINE L1 5789 6164 -1 483 35 0 0 chr6 37846594 37846652 -151432902 + AluY SINE Alu 2 59 -259 350 216 91 0 chr6 37846652 37846740 -151432814 - L2 LINE L2 -259 3054 2959 2446 99 0 3 chr6 37848014 37848327 -151431227 - AluSx SINE Alu 0 312 1 1997 176 185 62 chr6 37848424 37848833 -151430721 + L1MD3 LINE L1 6698 7055 -940 366 226 22 12 chr6 37848833 37848925 -151430629 + MLT1F1 LTR MaLR 39 130 -443 1997 176 185 62 chr6 37848925 37849406 -151430148 + L1MD3 LINE L1 7055 7970 -25 2159 90 0 0 chr6 37849420 37849697 -151429857 - AluSx SINE Alu 0 312 36 656 161 116 9 chr6 37849743 37849855 -151429699 + FLAM_C SINE Alu 2 125 -8 409 264 50 0 chr6 37849862 37850021 -151429533 + L1M4 LINE L1 3440 3606 -2540 2318 79 7 3 chr6 37850239 37850531 -151429023 + AluSp SINE Alu 1 293 -20 2422 82 3 3 chr6 37850719 37851022 -151428532 + AluSx SINE Alu 3 305 -7 4906 204 35 47 chr6 37851441 37852211 -151427343 + L1M4 LINE L1 3613 4391 -1755 2399 92 0 0 chr6 37852211 37852504 -151427050 - AluSg SINE Alu -17 293 1 4906 204 35 47 chr6 37852504 37852909 -151426645 + L1M4 LINE L1 4391 4772 -1374 3829 124 35 52 chr6 37852909 37853076 -151426478 + L1MA8 LINE L1 5553 5721 -570 620 189 90 0 chr6 37853076 37853198 -151426356 - FLAM_A SINE Alu 0 133 1 3829 124 35 52 chr6 37853198 37853778 -151425776 + L1MA8 LINE L1 5721 6287 -4 4906 204 35 47 chr6 37853778 37853957 -151425597 + L1M4 LINE L1 4772 4952 -1194 181 390 13 0 chr6 37853962 37854039 -151425515 + MIR SINE MIR 159 236 -26 818 183 78 90 chr6 37854388 37854438 -151425116 - MSTD LTR MaLR 0 396 347 1927 148 7 3 chr6 37854438 37854736 -151424818 - AluJb SINE Alu -12 300 2 818 183 78 90 chr6 37854736 37854950 -151424604 - MSTD LTR MaLR -49 347 82 2499 90 0 0 chr6 37854950 37855251 -151424303 + AluSq SINE Alu 1 301 -12 818 183 78 90 chr6 37855251 37855313 -151424241 - MSTD LTR MaLR -314 82 21 2507 74 0 10 chr6 37855412 37855724 -151423830 - AluSc SINE Alu 0 309 1 1911 154 0 0 chr6 37856048 37856328 -151423226 + AluSx SINE Alu 1 280 -32 2442 92 0 10 chr6 37856359 37856673 -151422881 - AluSx SINE Alu -1 311 1 1542 163 119 41 chr6 37857527 37857692 -151421862 - Tigger1 DNA MER2_type 0 2418 2267 2182 108 4 0 chr6 37857692 37857970 -151421584 - AluSx SINE Alu -33 279 1 1542 163 119 41 chr6 37857970 37858166 -151421388 - Tigger1 DNA MER2_type -151 2267 2029 * 1720 188 51 30 chr6 37858161 37858554 -151421000 - Tigger1 DNA MER2_type -2017 401 1 2601 50 0 0 chr6 37858807 37859106 -151420448 + AluY SINE Alu 2 300 -11 226 203 63 13 chr6 37859900 37859979 -151419575 + (CTGGGG)n Simple_repeat Simple_repeat 2 84 0 * 241 220 0 0 chr6 37859934 37859984 -151419570 + G-rich Low_complexity Low_complexity 3 52 0 1752 142 0 51 chr6 37862882 37863177 -151416377 - AluJo SINE Alu -24 288 9 1788 181 0 3 chr6 37863305 37863593 -151415961 - AluJo SINE Alu -25 287 1 206 271 0 0 chr6 37863967 37864015 -151415539 + G-rich Low_complexity Low_complexity 1 48 0 1136 145 0 0 chr6 37864691 37864843 -151414711 - FAM SINE Alu -22 163 12 1797 161 41 3 chr6 37865059 37865351 -151414203 - AluJb SINE Alu -9 303 1 25 51 0 0 chr6 37865564 37865603 -151413951 + AT_rich Low_complexity Low_complexity 1 39 0 229 308 0 0 chr6 37866348 37866413 -151413141 + GA-rich Low_complexity Low_complexity 3 67 0 224 261 197 92 chr6 37867829 37867971 -151411583 - MIR3 SINE MIR -14 194 38 1074 145 73 0 chr6 37868015 37868194 -151411360 + AluSp SINE Alu 121 312 -1 1665 182 10 10 chr6 37868197 37868504 -151411050 + AluSx SINE Alu 1 307 -5 251 329 88 27 chr6 37868603 37868807 -151410747 + L1MC4a LINE L1 7097 7326 -482 2165 113 10 10 chr6 37868807 37869117 -151410437 + AluSx SINE Alu 1 310 -2 251 329 88 27 chr6 37869117 37869207 -151410347 + L1MC4a LINE L1 7326 7409 -399 1983 164 0 3 chr6 37869210 37869503 -151410051 - AluSx SINE Alu -14 298 7 341 143 0 0 chr6 37871055 37871111 -151408443 - AluJ SINE Alu -36 266 211 890 149 0 27 chr6 37871112 37871260 -151408294 - AluJ SINE Alu -168 144 1 2010 83 79 4 chr6 37873736 37874013 -151405541 - AluSx SINE Alu -14 298 1 240 341 167 0 chr6 37874192 37874318 -151405236 - MIR SINE MIR -64 198 52 526 256 96 45 chr6 37874489 37874649 -151404905 - L2 LINE L2 -1 3312 3139 1530 169 68 0 chr6 37874649 37874915 -151404639 + AluJo SINE Alu 5 288 -24 526 256 96 45 chr6 37874915 37874953 -151404601 - L2 LINE L2 -174 3139 3104 2316 116 0 0 chr6 37875158 37875459 -151404095 + AluSp SINE Alu 1 301 -12 596 265 51 25 chr6 37875958 37876154 -151403400 - MIR SINE MIR -13 249 49 425 216 128 88 chr6 37879766 37879914 -151399640 + MIR SINE MIR 7 160 -102 * 805 249 95 5 chr6 37879909 37880130 -151399424 - MIR SINE MIR -21 241 1 250 232 122 24 chr6 37880195 37880277 -151399277 + MIR SINE MIR 173 262 0 2154 138 10 0 chr6 37880292 37880597 -151398957 - AluSq SINE Alu -5 308 1 918 250 50 28 chr6 37880619 37880939 -151398615 + MER46C DNA MER2_type 1 327 -11 2223 119 0 3 chr6 37880965 37881260 -151398294 + AluSg SINE Alu 1 294 -16 2318 94 13 0 chr6 37881723 37882031 -151397523 - AluSp SINE Alu -1 312 1 1813 175 7 3 chr6 37882063 37882371 -151397183 - AluJo SINE Alu -3 309 1 324 255 30 62 chr6 37882382 37882561 -151396993 - MIR3 SINE MIR -68 140 7 2135 109 0 81 chr6 37882642 37882829 -151396725 - AluSx SINE Alu -14 298 146 2243 118 0 10 chr6 37882829 37883142 -151396412 - AluSx SINE Alu -2 310 1 2135 109 0 81 chr6 37883142 37883274 -151396280 - AluSx SINE Alu -166 146 5 2117 78 0 57 chr6 37883290 37883627 -151395927 - AluSc SINE Alu 0 320 1 2461 78 0 31 chr6 37883722 37884043 -151395511 - AluY SINE Alu 0 311 1 2087 111 30 20 chr6 37884079 37884377 -151395177 - AluSx SINE Alu -11 301 1 2339 108 0 0 chr6 37884693 37884999 -151394555 - AluSg1 SINE Alu -3 306 1 1803 145 13 33 chr6 37885163 37885467 -151394087 + AluJo SINE Alu 1 298 -14 242 286 198 37 chr6 37885612 37885829 -151393725 + L1ME4a LINE L1 5409 5660 -2148 425 323 63 36 chr6 37885863 37886118 -151393436 + L1ME4a LINE L1 5742 6004 -117 2539 80 0 6 chr6 37886266 37886579 -151392975 - AluSx SINE Alu -1 311 1 1807 84 3 131 chr6 37886654 37886998 -151392556 - AluSg SINE Alu 0 300 1 2549 63 0 3 chr6 37888145 37888445 -151391109 - AluY SINE Alu -12 299 1 2058 112 16 36 chr6 37892439 37892742 -151386812 + AluSx SINE Alu 1 297 -15 313 254 172 0 chr6 37892742 37892864 -151386690 - L2 LINE L2 -21 3292 3150 354 326 221 5 chr6 37892910 37893358 -151386196 - L2 LINE L2 -975 2339 1795 676 314 59 5 chr6 37943702 37943922 -151335632 + MIR SINE MIR 19 250 -12 1329 287 31 21 chr6 37943923 37944348 -151335206 + LTR16A LTR ERVL 18 446 -4 1372 186 18 46 chr6 37944360 37944640 -151334914 + MSTD LTR MaLR 1 272 -124 334 219 21 0 chr6 37944644 37944740 -151334814 + L1MA6 LINE L1 5961 6058 -242 280 268 27 27 chr6 37945132 37945244 -151334310 + L1ME4a LINE L1 2957 3068 -3078 207 170 0 38 chr6 37945275 37945328 -151334226 + A-rich Low_complexity Low_complexity 5 55 0 259 338 58 17 chr6 37945544 37945784 -151333770 - L1M4 LINE L1 -2089 4057 3808 901 129 0 7 chr6 37945895 37946042 -151333512 + L1MA6 LINE L1 6149 6294 -6 293 347 53 15 chr6 37946186 37946451 -151333103 + L1ME4a LINE L1 3797 4071 -2075 340 299 46 61 chr6 37946492 37946689 -151332865 + L1ME4a LINE L1 5115 5308 -838 813 165 0 0 chr6 37946689 37946816 -151332738 + AluJ SINE Alu 1 127 -175 546 169 0 0 chr6 37946830 37946913 -151332641 + AluJ SINE Alu 197 279 -33 908 84 8 0 chr6 37946913 37947044 -151332510 + (GAA)n Simple_repeat Simple_repeat 1 132 0 274 336 86 10 chr6 37947057 37947578 -151331976 + L1ME4a LINE L1 5378 5938 -183 289 315 135 0 chr6 37947629 37947740 -151331814 - L2 LINE L2 -2 3311 3186 311 244 80 34 chr6 37947905 37948081 -151331473 + L1M4 LINE L1 4884 5067 -1079 4432 74 22 51 chr6 37948181 37949097 -151330457 + SVA Other Other 152 866 -520 5854 71 56 57 chr6 37949125 37950859 -151328695 + SVA Other Other 432 1380 -6 902 207 14 11 chr6 37950863 37951113 -151328441 + L1M4 LINE L1 1277 1525 -5017 * 2005 238 63 53 chr6 37951110 37951622 -151327932 + L1M4 LINE L1 1369 1891 -4755 768 138 0 14 chr6 37951622 37951760 -151327794 + L1MB2 LINE L1 6035 6170 -1 2005 238 63 53 chr6 37951760 37951945 -151327609 + L1M4 LINE L1 1891 2073 -4573 318 250 11 11 chr6 37951939 37952031 -151327523 + L1M4 LINE L1 5362 5453 -1191 * 782 226 30 0 chr6 37952036 37952200 -151327354 + AluJo SINE Alu 137 305 -7 469 170 16 0 chr6 37952201 37952310 -151327244 + L1M4 LINE L1 5452 5565 -1079 2245 263 90 25 chr6 37952325 37953457 -151326097 - L1M4 LINE L1 -1348 4798 3593 1392 98 6 0 chr6 37953467 37953650 -151325904 - THE1C LTR MaLR 0 375 192 1446 186 6 46 chr6 37953921 37954073 -151325481 + AluJo SINE Alu 1 135 -177 321 26 0 0 chr6 37954073 37954111 -151325443 + (CA)n Simple_repeat Simple_repeat 2 39 0 1446 186 6 46 chr6 37954111 37954281 -151325273 + AluJo SINE Alu 135 310 -2 2320 174 109 79 chr6 37954970 37955315 -151324239 - LTR8A LTR ERV1 0 727 394 2478 45 7 0 chr6 37955315 37955624 -151323930 + AluY SINE Alu 1 311 0 2320 174 109 79 chr6 37955624 37955984 -151323570 - LTR8A LTR ERV1 -333 394 1 1380 176 4 19 chr6 37956716 37956978 -151322576 - AluJb SINE Alu -54 258 1 1719 181 0 3 chr6 37957179 37957483 -151322071 - AluJb SINE Alu -4 308 6 5861 138 71 58 chr6 37957591 37957937 -151321617 - Tigger3b DNA MER2_type -1797 1231 891 215 61 30 0 chr6 37957937 37957970 -151321584 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5861 138 71 58 chr6 37957970 37958162 -151321392 - Tigger3b DNA MER2_type -2137 891 703 7818 23 6 0 chr6 37958162 37959232 -151320322 - L1PA3 LINE L1 0 6155 5083 5861 138 71 58 chr6 37959232 37959907 -151319647 - Tigger3b DNA MER2_type -2325 703 2 439 409 25 9 chr6 37960116 37960436 -151319118 + L1MEc LINE L1 801 1125 -5997 292 274 24 40 chr6 37960844 37960968 -151318586 + L1MEc LINE L1 1370 1491 -4932 * 336 302 67 38 chr6 37960954 37961298 -151318256 + L1M4 LINE L1 3211 3564 -2582 1634 135 11 0 chr6 37961316 37961576 -151317978 + MER2 DNA MER2_type 1 263 -82 2507 121 14 3 chr6 37961687 37962058 -151317496 + THE1C LTR MaLR 1 375 0 2254 263 90 25 chr6 37962068 37963200 -151316354 + L1M4 LINE L1 3593 4798 -1348 469 170 16 0 chr6 37963215 37963324 -151316230 - L1 LINE L1 -1079 5067 4954 770 226 30 0 chr6 37963325 37963489 -151316065 - FRAM SINE Alu -7 169 1 318 250 11 11 chr6 37963494 37963586 -151315968 - L1 LINE L1 -1191 4955 4864 * 2951 223 38 148 chr6 37963580 37963765 -151315789 - L1M4c LINE L1 -4573 2073 1869 752 116 7 22 chr6 37963765 37963903 -151315651 - L1MB2 LINE L1 -1 6170 6035 2951 223 38 148 chr6 37963903 37966011 -151313543 - L1M4c LINE L1 -4777 1869 2 495 270 61 86 chr6 37966010 37966229 -151313325 - L1MEc LINE L1 -4535 1861 1657 * 485 149 53 0 chr6 37966229 37966323 -151313231 + L1MA7 LINE L1 6187 6285 -6 495 270 61 86 chr6 37966323 37966547 -151313007 - L1MEc LINE L1 -4739 1657 1429 873 256 68 8 chr6 37966706 37966956 -151312598 + MLT2D LTR ERVL 1 265 -149 1548 208 6 60 chr6 37966957 37967308 -151312246 + MER21B-int LTR ERV1 2341 2672 -1519 939 113 21 0 chr6 37967308 37967450 -151312104 + MSTA LTR MaLR 1 145 -283 406 219 0 0 chr6 37967450 37967523 -151312031 + MER21B-int LTR ERV1 2667 2739 -1452 407 256 85 16 chr6 37967529 37967658 -151311896 + FRAM SINE Alu 16 153 -13 528 194 22 72 chr6 37967668 37967807 -151311747 + MER21B-int LTR ERV1 2742 2873 -1318 1921 149 0 0 chr6 37967812 37968114 -151311440 + AluSx SINE Alu 1 302 -10 2938 238 61 42 chr6 37968165 37968506 -151311048 + MER21B-int LTR ERV1 3068 3401 -790 414 0 0 0 chr6 37968506 37968552 -151311002 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2938 238 61 42 chr6 37968552 37969165 -151310389 + MER21B-int LTR ERV1 3401 4040 -151 1346 232 0 10 chr6 37969262 37969572 -151309982 + AluJo SINE Alu 1 307 -5 1347 261 11 25 chr6 37969613 37969969 -151309585 + MER21B LTR ERV1 2 352 -511 337 183 24 24 chr6 37970488 37970570 -151308984 + MER4C LTR ERV1 65 146 -319 554 337 34 4 chr6 37971385 37971649 -151307905 - LTR16B LTR ERVL -131 333 62 1550 338 40 36 chr6 37971657 37972876 -151306678 - ERVL LTR ERVL -504 5260 3693 * 1830 291 65 45 chr6 37972875 37973728 -151305826 - ERVL LTR ERVL -2240 3524 2655 270 175 0 0 chr6 37973786 37973826 -151305728 - Alu SINE Alu -19 282 243 * 286 133 0 22 chr6 37973817 37973862 -151305692 - AluSg/x SINE Alu -136 164 121 2025 118 7 0 chr6 37973864 37974170 -151305384 - AluSp SINE Alu -3 310 3 2121 289 53 48 chr6 37974181 37975154 -151304400 - ERVL LTR ERVL -2430 2566 1589 1271 314 47 22 chr6 37975225 37975653 -151303901 - ERVL LTR ERVL -3550 1446 999 1917 137 90 29 chr6 37975653 37975996 -151303558 + THE1B LTR MaLR 1 364 0 1271 314 47 22 chr6 37975996 37976147 -151303407 - ERVL LTR ERVL -3997 999 853 326 307 101 61 chr6 37976295 37976572 -151302982 - ERVL LTR ERVL -4444 552 265 729 272 78 99 chr6 37976825 37976988 -151302566 - LTR16B LTR ERVL 0 464 299 1609 134 0 0 chr6 37976988 37977227 -151302327 - AluSx SINE Alu -73 239 1 729 272 78 99 chr6 37977227 37977537 -151302017 - LTR16B LTR ERVL -165 299 1 2037 251 68 45 chr6 37977537 37978306 -151301248 - L2 LINE L2 -1658 1656 871 266 233 122 0 chr6 37978378 37978468 -151301086 - L2 LINE L2 -2411 903 803 217 241 63 0 chr6 37978570 37978649 -151300905 - L2 LINE L2 -2513 801 718 1716 260 71 27 chr6 37978678 37979173 -151300381 - MLT1E2 LTR MaLR -11 615 88 2509 26 7 10 chr6 37979173 37979483 -151300071 - AluY SINE Alu -2 309 1 1716 260 71 27 chr6 37979483 37979576 -151299978 - MLT1E2 LTR MaLR -538 88 1 1413 282 105 14 chr6 37979583 37980204 -151299350 - L2 LINE L2 -2620 694 18 2029 131 84 6 chr6 37981434 37981777 -151297777 - Tigger1 DNA MER2_type 0 2418 2049 2358 169 10 5 chr6 37981783 37982180 -151297374 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 37982181 37982219 -151297335 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 227 272 99 0 chr6 37982462 37982543 -151297011 + MIR SINE MIR 112 200 -62 1030 143 7 60 chr6 37982816 37983037 -151296517 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 37983463 37983557 -151295997 + (TG)n Simple_repeat Simple_repeat 1 94 0 2594 68 48 0 chr6 37983839 37984175 -151295379 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 37984608 37984633 -151294921 + AT_rich Low_complexity Low_complexity 1 25 0 1052 288 48 17 chr6 37984831 37985251 -151294303 + LTR33 LTR ERVL 10 442 -79 756 180 0 0 chr6 37985374 37985496 -151294058 - FLAM_C SINE Alu -20 123 2 2505 71 0 0 chr6 37989946 37990243 -151289311 - AluY SINE Alu -14 297 1 906 198 17 6 chr6 37990701 37990878 -151288676 - MLT1B LTR MaLR 0 390 212 2488 68 0 16 chr6 37991043 37991352 -151288202 + AluY SINE Alu 1 304 -7 2837 142 2 4 chr6 37991690 37992147 -151287407 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 37992344 37992398 -151287156 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2369 50 30 3 chr6 37992457 37992755 -151286799 - AluY SINE Alu -5 306 1 392 328 121 3 chr6 37992775 37993133 -151286421 - L1ME3 LINE L1 -211 5951 5552 303 280 252 5 chr6 37993133 37993347 -151286207 + L2 LINE L2 1984 2250 -1064 548 242 90 24 chr6 37993380 37993591 -151285963 + L1MC4a LINE L1 5513 5737 -2071 430 234 71 59 chr6 37993806 37994045 -151285509 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 37994185 37994229 -151285325 + AT_rich Low_complexity Low_complexity 1 44 0 533 170 38 0 chr6 37994977 37995083 -151284471 + MER5A DNA MER1_type 3 112 -77 543 103 0 0 chr6 37995125 37995222 -151284332 + (TC)n Simple_repeat Simple_repeat 2 98 0 4563 75 0 2 chr6 37995537 37996107 -151283447 - MER61E LTR ERV1 0 569 1 263 328 42 34 chr6 37996147 37996266 -151283288 + L2 LINE L2 3153 3272 0 1556 186 6 46 chr6 37998322 37998474 -151281080 + AluJo SINE Alu 1 135 -177 321 26 0 0 chr6 37998474 37998512 -151281042 + (CA)n Simple_repeat Simple_repeat 2 39 0 1556 186 6 46 chr6 37998512 37998682 -151280872 + AluJo SINE Alu 135 310 -2 2316 174 109 79 chr6 37999371 37999716 -151279838 - LTR8A LTR ERV1 0 727 394 2612 45 7 0 chr6 37999716 38000025 -151279529 + AluY SINE Alu 1 311 0 2316 174 109 79 chr6 38000025 38000385 -151279169 - LTR8A LTR ERV1 -333 394 1 9676 67 13 2 chr6 38000580 38001789 -151277765 + HERVL-A1 LTR ERVL 4432 5654 0 3005 101 18 40 chr6 38001789 38002243 -151277311 + MLT2A1 LTR ERVL 1 444 0 7746 195 34 8 chr6 38002243 38004029 -151275525 - L1PBa LINE L1 -2234 4628 2793 2092 122 61 19 chr6 38004273 38004633 -151274921 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 38004633 38005307 -151274247 + THE1C-int LTR MaLR 1 656 -924 2414 79 3 0 chr6 38006791 38007082 -151272472 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 38007107 38007148 -151272406 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 38007149 38007220 -151272334 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 221 172 17 52 chr6 38008578 38008636 -151270918 + GA-rich Low_complexity Low_complexity 3 58 0 342 45 0 0 chr6 38008666 38008710 -151270844 + (TG)n Simple_repeat Simple_repeat 2 45 0 5693 166 18 10 chr6 38009304 38009441 -151270113 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 38009441 38009472 -151270082 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 38009472 38010740 -151268814 - L1M1 LINE L1 -805 5498 4214 2564 168 43 111 chr6 38010743 38011411 -151268143 + MER21B LTR ERV1 218 840 -23 1496 177 3 66 chr6 38011965 38012298 -151267256 - AluJb SINE Alu 0 312 1 1831 181 0 3 chr6 38012499 38012803 -151266751 - AluJb SINE Alu -4 308 6 5912 138 71 58 chr6 38012911 38013257 -151266297 - Tigger3b DNA MER2_type -1797 1231 891 215 61 30 0 chr6 38013257 38013290 -151266264 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5912 138 71 58 chr6 38013290 38013482 -151266072 - Tigger3b DNA MER2_type -2137 891 703 7840 23 6 0 chr6 38013482 38014552 -151265002 - L1PA3 LINE L1 0 6155 5083 5912 138 71 58 chr6 38014552 38015227 -151264327 - Tigger3b DNA MER2_type -2325 703 2 334 409 25 9 chr6 38015436 38015756 -151263798 + L1MEc LINE L1 801 1125 -5997 298 274 24 40 chr6 38016164 38016288 -151263266 + L1MEc LINE L1 1370 1491 -4932 * 350 302 67 38 chr6 38016274 38016618 -151262936 + L1M4 LINE L1 3211 3564 -2582 1645 135 11 0 chr6 38016636 38016896 -151262658 + MER2 DNA MER2_type 1 263 -82 2510 121 14 3 chr6 38017007 38017378 -151262176 + THE1C LTR MaLR 1 375 0 2324 263 90 25 chr6 38017388 38018520 -151261034 + L1M4 LINE L1 3593 4798 -1348 472 170 16 0 chr6 38018535 38018644 -151260910 - L1 LINE L1 -1079 5067 4954 765 226 30 0 chr6 38018645 38018809 -151260745 - FRAM SINE Alu -7 169 1 319 250 11 11 chr6 38018814 38018906 -151260648 - L1 LINE L1 -1191 4955 4864 * 2967 222 38 148 chr6 38018900 38019085 -151260469 - L1M4c LINE L1 -4573 2073 1869 763 116 7 22 chr6 38019085 38019223 -151260331 - L1MB2 LINE L1 -1 6170 6035 2967 222 38 148 chr6 38019223 38021331 -151258223 - L1M4c LINE L1 -4777 1869 2 522 270 61 86 chr6 38021330 38021549 -151258005 - L1MEc LINE L1 -4535 1861 1657 * 494 149 53 0 chr6 38021549 38021643 -151257911 + L1MA7 LINE L1 6187 6285 -6 522 270 61 86 chr6 38021643 38021867 -151257687 - L1MEc LINE L1 -4739 1657 1429 882 256 68 8 chr6 38022026 38022276 -151257278 + MLT2D LTR ERVL 1 265 -149 1550 208 6 60 chr6 38022277 38022628 -151256926 + MER21-int LTR ERV1 2341 2672 -1519 935 113 21 0 chr6 38022628 38022770 -151256784 + MSTA LTR MaLR 1 145 -283 409 219 0 0 chr6 38022770 38022843 -151256711 + MER21-int LTR ERV1 2667 2739 -1452 406 256 85 16 chr6 38022849 38022978 -151256576 + FRAM SINE Alu 16 153 -13 528 194 22 72 chr6 38022988 38023127 -151256427 + MER21-int LTR ERV1 2742 2873 -1318 2037 149 0 0 chr6 38023132 38023434 -151256120 + AluSx SINE Alu 1 302 -10 1736 243 79 45 chr6 38023485 38023826 -151255728 + MER21-int LTR ERV1 3068 3439 -752 414 0 0 0 chr6 38023826 38023872 -151255682 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1736 243 79 45 chr6 38023872 38024128 -151255426 + MER21-int LTR ERV1 3439 3685 -506 303 231 77 34 chr6 38024131 38024248 -151255306 - HAL1 LINE L1 -586 1921 1800 180 280 67 0 chr6 38024297 38024372 -151255182 - MER5A DNA MER1_type -85 104 25 686 209 0 16 chr6 38024400 38024529 -151255025 - AluJb SINE Alu -30 282 156 1781 203 27 78 chr6 38024594 38024664 -151254890 - L1MB2 LINE L1 -1 6170 6098 691 211 0 0 chr6 38024664 38024797 -151254757 + FLAM_C SINE Alu 1 133 0 1781 203 27 78 chr6 38024797 38025248 -151254306 - L1MB2 LINE L1 -73 6098 5676 259 133 0 83 chr6 38025616 38025676 -151253878 + MLT2B3 LTR ERVL 458 546 -8 304 318 74 33 chr6 38025681 38026175 -151253379 - L2 LINE L2 -132 3181 2666 1509 230 27 29 chr6 38026184 38026628 -151252926 - L1MB2 LINE L1 -799 5347 4905 368 176 27 0 chr6 38027555 38027629 -151251925 - MER20 DNA MER1_type -138 81 6 418 284 143 38 chr6 38027981 38028404 -151251150 + L1MC4 LINE L1 7332 7900 -142 215 170 0 19 chr6 38028431 38028484 -151251070 + (CA)n Simple_repeat Simple_repeat 1 52 0 1073 173 2 0 chr6 38028487 38028688 -151250866 - HUERS-P3 LTR ERV1 -6753 665 595 531 278 43 28 chr6 38028685 38028993 -151250561 - ERVL-C1 LTR ERVL -5377 387 28 * 297 263 68 34 chr6 38029384 38029502 -151250052 + MER58B DNA MER1_type 220 341 0 461 162 40 30 chr6 38030071 38030170 -151249384 + MIR SINE MIR 40 139 -123 300 158 0 0 chr6 38031475 38031532 -151248022 + T-rich Low_complexity Low_complexity 1 57 0 33 43 0 0 chr6 38032890 38032937 -151246617 + AT_rich Low_complexity Low_complexity 1 47 0 256 125 0 0 chr6 38033421 38033461 -151246093 - ERVL-C1 LTR ERVL -5614 40 1 1310 212 52 7 chr6 38033463 38033501 -151246053 - MLT2C1 LTR ERVL -2 395 360 288 0 0 0 chr6 38033501 38033533 -151246021 + (TG)n Simple_repeat Simple_repeat 2 33 0 1310 212 52 7 chr6 38033533 38033763 -151245791 - MLT2C1 LTR ERVL -37 360 115 2274 214 71 28 chr6 38034680 38035259 -151244295 - MLT1E3 LTR MaLR 0 624 21 550 277 7 14 chr6 38035485 38035626 -151243928 - MLT1F1 LTR MaLR -8 559 420 * 557 331 33 3 chr6 38035621 38035926 -151243628 - LTR16B LTR ERVL -56 408 95 1205 323 52 35 chr6 38035966 38036999 -151242555 - ERVL LTR ERVL -433 5221 4171 1615 315 78 53 chr6 38037239 38038586 -151240968 - ERVL LTR ERVL -2238 3526 2146 940 321 39 5 chr6 38038624 38039038 -151240516 - ERVL LTR ERVL -2966 2030 1603 325 339 114 3 chr6 38039439 38039795 -151239759 - L1ME3A LINE L1 -211 5951 5552 463 253 207 6 chr6 38039833 38040007 -151239547 + L2 LINE L2 2042 2250 -1064 461 255 50 108 chr6 38040040 38040318 -151239236 + L1MC4a LINE L1 5513 5774 -2034 294 307 18 37 chr6 38040503 38040666 -151238888 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 38040828 38040859 -151238695 + AT_rich Low_complexity Low_complexity 1 31 0 585 170 38 0 chr6 38041613 38041719 -151237835 + MER5A DNA MER1_type 3 112 -77 681 45 0 0 chr6 38041761 38041850 -151237704 + (TC)n Simple_repeat Simple_repeat 2 90 0 4609 72 2 0 chr6 38042165 38042733 -151236821 - MER61E LTR ERV1 0 569 1 292 348 63 32 chr6 38042734 38042892 -151236662 + L2 LINE L2 3110 3272 0 2254 116 7 3 chr6 38043885 38044188 -151235366 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 38044203 38044231 -151235323 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 30 90 chr6 38044637 38044741 -151234813 - L1ME LINE L1 -412 5709 5617 2387 99 0 0 chr6 38044741 38045035 -151234519 - AluSg SINE Alu -16 294 1 299 251 30 90 chr6 38045035 38045097 -151234457 - L1ME LINE L1 -504 5617 5553 2483 73 3 0 chr6 38045097 38045398 -151234156 + AluY SINE Alu 1 302 -9 567 290 135 34 chr6 38045421 38046151 -151233403 - L2 LINE L2 -3 3310 2514 1536 179 29 36 chr6 38047197 38047345 -151232209 + AluJo SINE Alu 1 148 -164 381 22 0 0 chr6 38047345 38047391 -151232163 + (CA)n Simple_repeat Simple_repeat 2 47 0 1536 179 29 36 chr6 38047391 38047550 -151232004 + AluJo SINE Alu 148 306 -6 2557 176 111 45 chr6 38048229 38048911 -151230643 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 38049492 38049516 -151230038 + AT_rich Low_complexity Low_complexity 1 24 0 915 203 0 0 chr6 38049516 38049674 -151229880 - FRAM SINE Alu -8 168 11 2000 172 126 20 chr6 38049723 38050183 -151229371 + LTR22 LTR ERVK 1 509 0 1984 128 0 0 chr6 38050318 38050584 -151228970 - AluSq SINE Alu -47 266 1 407 324 0 0 chr6 38050698 38050834 -151228720 + L1ME1 LINE L1 6027 6162 -4 328 253 44 114 chr6 38050843 38051116 -151228438 + L1MC4 LINE L1 7762 8015 -27 2572 53 0 0 chr6 38051120 38051420 -151228134 + AluY SINE Alu 1 300 -11 2212 80 7 3 chr6 38052212 38052499 -151227055 + AluSp SINE Alu 1 288 -25 1072 149 6 6 chr6 38053374 38053535 -151226019 + FRAM SINE Alu 1 160 -16 616 200 50 61 chr6 38053589 38053769 -151225785 - MER5B DNA MER1_type 0 178 1 536 178 9 37 chr6 38053854 38053961 -151225593 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 38053971 38054011 -151225543 + (T)n Simple_repeat Simple_repeat 1 40 0 741 71 31 0 chr6 38054011 38054109 -151225445 - HY3 scRNA scRNA 0 101 1 9369 144 24 16 chr6 38057273 38059094 -151220460 - L1MA3 LINE L1 0 6305 4453 2298 116 3 0 chr6 38059094 38059395 -151220159 - AluSp SINE Alu -11 302 1 9369 144 24 16 chr6 38059395 38060306 -151219248 - L1MA3 LINE L1 -1852 4453 3551 2037 178 142 42 chr6 38060300 38060584 -151218970 - L1MB3 LINE L1 -4 6179 5925 * 2287 117 0 3 chr6 38060584 38060892 -151218662 + AluSq SINE Alu 5 311 -2 2037 178 142 42 chr6 38060892 38061167 -151218387 - L1MB3 LINE L1 -258 5925 5679 231 88 0 0 chr6 38061167 38061201 -151218353 + (TG)n Simple_repeat Simple_repeat 1 34 0 2037 178 142 42 chr6 38061201 38061358 -151218196 - L1MB3 LINE L1 -504 5679 5317 887 250 52 32 chr6 38061371 38061719 -151217835 - L1MB3 LINE L1 -893 5253 4899 213 39 0 0 chr6 38064222 38064248 -151215306 + (CTG)n Simple_repeat Simple_repeat 2 27 0 444 286 143 0 chr6 38066988 38067163 -151212391 + MIR SINE MIR 24 223 -39 22 0 0 0 chr6 38067197 38067219 -151212335 + AT_rich Low_complexity Low_complexity 1 22 0 2502 67 3 3 chr6 38067231 38067528 -151212026 + AluSc SINE Alu 1 297 -12 2046 139 0 0 chr6 38067529 38067809 -151211745 - AluSx SINE Alu -32 280 1 222 105 0 0 chr6 38067809 38067847 -151211707 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 38067865 38067900 -151211654 + AT_rich Low_complexity Low_complexity 1 35 0 521 292 106 20 chr6 38069017 38069462 -151210092 - HAL1 LINE L1 -5 2502 2020 2599 136 46 68 chr6 38069474 38070035 -151209519 - LTR9 LTR ERV1 -63 549 1 447 258 28 70 chr6 38070107 38070320 -151209234 + LTR67 LTR ERVL 250 453 -104 271 311 80 26 chr6 38070650 38070801 -151208753 + MER5B DNA MER1_type 1 159 -19 298 273 68 0 chr6 38070828 38070916 -151208638 + MER5A DNA MER1_type 9 102 -87 2316 254 92 23 chr6 38070996 38072155 -151207399 + L2 LINE L2 2074 3311 -2 230 331 115 15 chr6 38072167 38072297 -151207257 - L3 LINE CR1 -550 1027 885 21 82 0 0 chr6 38075426 38075475 -151204079 + GC_rich Low_complexity Low_complexity 1 49 0 203 318 19 9 chr6 38077275 38077382 -151202172 + CT-rich Low_complexity Low_complexity 5 112 0 807 311 66 17 chr6 38077492 38078071 -151201483 - L1MEc LINE L1 -4155 2241 1635 344 320 46 59 chr6 38078101 38078320 -151201234 - L1ME1 LINE L1 0 6166 5951 1578 271 56 35 chr6 38078385 38079048 -151200506 - L1ME1 LINE L1 -112 6448 5772 230 275 70 28 chr6 38079069 38079211 -151200343 - L1ME1 LINE L1 -1843 4697 4550 770 175 48 0 chr6 38079216 38079342 -151200212 - FLAM_C SINE Alu -1 132 1 5547 94 31 1 chr6 38079438 38080275 -151199279 + L1PA8A LINE L1 5267 6128 -3 3528 70 0 34 chr6 38080303 38080801 -151198753 + L1PA13 LINE L1 5683 6163 0 318 241 47 35 chr6 38080808 38080979 -151198575 - L1ME1 LINE L1 -3898 2642 2471 820 299 52 35 chr6 38080992 38081514 -151198040 + L1MEc LINE L1 1515 2045 -4351 326 206 0 0 chr6 38081523 38081591 -151197963 + L1P LINE L1 3148 3215 -2931 1353 223 7 34 chr6 38081878 38082189 -151197365 + AluJo SINE Alu 1 303 0 21 0 0 0 chr6 38082216 38082237 -151197317 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr6 38082408 38082436 -151197118 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 247 0 37 chr6 38082471 38082552 -151197002 - HAL1 LINE L1 -2 2505 2428 598 265 177 8 chr6 38082672 38083061 -151196493 - HAL1 LINE L1 -17 2490 2036 605 227 8 8 chr6 38083153 38083281 -151196273 - FLAM_A SINE Alu -5 128 1 881 225 49 4 chr6 38083336 38083580 -151195974 - HAL1 LINE L1 -723 1784 1530 1666 163 53 25 chr6 38083583 38083866 -151195688 - AluJb SINE Alu -21 291 1 395 250 164 0 chr6 38083946 38084074 -151195480 + L2 LINE L2 2499 2647 -667 2031 112 14 3 chr6 38084158 38084444 -151195110 + AluSq SINE Alu 11 299 -14 352 350 56 0 chr6 38084838 38085018 -151194536 - L1ME LINE L1 -393 5769 5580 765 249 37 58 chr6 38086856 38087266 -151192288 - L1MC5 LINE L1 -476 7485 7085 402 276 125 27 chr6 38087293 38087797 -151191757 + L1ME3A LINE L1 5596 6161 -9 813 257 101 22 chr6 38088083 38088449 -151191105 + ERVL LTR ERVL 3880 4274 -1490 4570 196 17 23 chr6 38088596 38089110 -151190444 + L1P LINE L1 3469 3985 -2161 809 112 0 0 chr6 38089110 38089217 -151190337 + U6 snRNA snRNA 1 107 0 4570 196 17 23 chr6 38089217 38089918 -151189636 + L1P LINE L1 3985 4657 -1489 29 0 0 0 chr6 38089934 38089963 -151189591 + AT_rich Low_complexity Low_complexity 1 29 0 1372 135 18 21 chr6 38090678 38090982 -151188572 + L1MB5 LINE L1 4625 4938 -1208 * 3623 242 40 24 chr6 38090964 38092100 -151187454 + L1M4c LINE L1 742 1895 -4489 2196 181 19 19 chr6 38092100 38092532 -151187022 + L1MB5 LINE L1 5743 6174 0 7579 67 35 4 chr6 38092653 38093630 -151185924 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 38094246 38094292 -151185262 + (CATA)n Simple_repeat Simple_repeat 2 47 0 950 196 0 0 chr6 38094510 38094668 -151184886 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 38094698 38094733 -151184821 + AT_rich Low_complexity Low_complexity 1 35 0 1792 282 17 8 chr6 38095304 38096093 -151183461 - ERVL-C1 LTR ERVL -4812 952 28 297 263 68 34 chr6 38096484 38096602 -151182952 + MER58B DNA MER1_type 220 341 0 461 162 40 30 chr6 38097171 38097270 -151182284 + MIR SINE MIR 40 139 -123 300 158 0 0 chr6 38098575 38098632 -151180922 + T-rich Low_complexity Low_complexity 1 57 0 33 43 0 0 chr6 38099990 38100037 -151179517 + AT_rich Low_complexity Low_complexity 1 47 0 256 125 0 0 chr6 38100521 38100561 -151178993 - ERVL-C1 LTR ERVL -5614 40 1 1310 212 52 7 chr6 38100563 38100601 -151178953 - MLT2C1 LTR ERVL -2 395 360 288 0 0 0 chr6 38100601 38100633 -151178921 + (TG)n Simple_repeat Simple_repeat 2 33 0 1310 212 52 7 chr6 38100633 38100863 -151178691 - MLT2C1 LTR ERVL -37 360 115 1437 112 15 0 chr6 38101175 38101372 -151178182 - AluY SINE Alu -111 200 1 228 227 0 0 chr6 38101423 38101467 -151178087 - L2 LINE L2 -3 3310 3267 212 361 69 21 chr6 38101663 38101954 -151177600 - L2 LINE L2 -374 2940 2636 1578 211 162 41 chr6 38102923 38103411 -151176143 + MLT1E LTR MaLR 43 589 -4 570 250 118 5 chr6 38104091 38104295 -151175259 + MIR SINE MIR 3 229 -33 229 145 0 58 chr6 38104511 38104580 -151174974 + (CATA)n Simple_repeat Simple_repeat 4 68 0 231 330 0 11 chr6 38104581 38104669 -151174885 + (CA)n Simple_repeat Simple_repeat 2 88 0 2828 29 0 0 chr6 38105160 38105471 -151174083 + AluY SINE Alu 1 311 0 327 96 0 0 chr6 38105836 38105888 -151173666 + (GGA)n Simple_repeat Simple_repeat 1 52 0 291 322 173 0 chr6 38107692 38107900 -151171654 + MIR SINE MIR 8 251 -11 669 349 79 31 chr6 38108954 38109127 -151170427 + L1M4 LINE L1 4097 4260 -1886 342 45 0 0 chr6 38109127 38109171 -151170383 + (TA)n Simple_repeat Simple_repeat 2 45 0 2191 36 0 16 chr6 38109171 38109424 -151170130 - AluY SINE Alu -6 305 57 669 349 79 31 chr6 38109424 38110060 -151169494 + L1M4 LINE L1 4259 4946 -1200 280 298 133 26 chr6 38110246 38110397 -151169157 - ERVL LTR ERVL -3801 1963 1797 209 225 0 0 chr6 38110794 38110834 -151168720 + MER5A DNA MER1_type 150 189 0 433 288 17 28 chr6 38110845 38111022 -151168532 - MER5B DNA MER1_type -3 175 1 347 260 54 39 chr6 38111185 38111389 -151168165 - LTR33 LTR ERVL -312 209 3 250 234 16 0 chr6 38111392 38111456 -151168098 + L1ME3A LINE L1 4093 4157 -1989 266 272 151 20 chr6 38111462 38111767 -151167787 + L1ME3A LINE L1 4259 4603 -1543 549 153 97 0 chr6 38111910 38112034 -151167520 + L1MB7 LINE L1 6036 6171 -13 591 309 94 31 chr6 38112042 38112521 -151167033 + L1ME3A LINE L1 5429 5937 -233 624 224 12 53 chr6 38113000 38113170 -151166384 + MER3 DNA MER1_type 19 181 -28 415 254 8 17 chr6 38113869 38113987 -151165567 - MIR SINE MIR -18 244 128 887 128 43 7 chr6 38114345 38114486 -151165068 - AluJo SINE Alu -45 267 122 2439 129 26 0 chr6 38116123 38116503 -151163051 - MLT1B LTR MaLR 0 390 1 616 221 47 47 chr6 38117547 38117719 -151161835 + MLT1G1 LTR MaLR 11 182 -413 1411 172 109 62 chr6 38117853 38117935 -151161619 - L1M4 LINE L1 -3828 2554 2477 2156 117 0 7 chr6 38117935 38118233 -151161321 - AluSg SINE Alu -14 296 1 1411 172 109 62 chr6 38118233 38118641 -151160913 - L1M4 LINE L1 -3905 2477 2043 1293 253 8 4 chr6 38118642 38118981 -151160573 - MLT2C1 LTR ERVL -99 298 1 2996 205 34 56 chr6 38118988 38119402 -151160152 - ERVL-C1 LTR ERVL -16 5748 5356 1645 169 11 18 chr6 38119402 38119720 -151159834 - AluJb SINE Alu 0 316 1 2996 205 34 56 chr6 38119720 38120078 -151159476 - ERVL-C1 LTR ERVL -408 5356 4992 1829 178 49 40 chr6 38120078 38120546 -151159008 + L1P3 LINE L1 1328 2505 -5079 * 9324 205 7 9 chr6 38120545 38122455 -151157099 + L1P3 LINE L1 2733 4638 -2946 2226 100 10 3 chr6 38122456 38122755 -151156799 - AluSq SINE Alu -12 301 1 6072 98 34 8 chr6 38122756 38122884 -151156670 + L1PA13 LINE L1 4603 4726 -1437 2135 128 0 7 chr6 38122884 38123181 -151156373 - AluSg SINE Alu -13 297 3 6072 98 34 8 chr6 38123181 38124584 -151154970 + L1PA13 LINE L1 4726 6163 0 495 226 19 0 chr6 38124587 38124693 -151154861 - ERVL LTR ERVL -3552 2212 2105 885 189 27 0 chr6 38124714 38124899 -151154655 - L1 LINE L1 -2688 4160 3971 1957 181 41 102 chr6 38124912 38125464 -151154090 - LTR10E LTR ERV1 -42 591 79 2017 100 0 63 chr6 38125464 38125794 -151153760 - AluSg SINE Alu 0 311 1 1957 181 41 102 chr6 38125794 38125869 -151153685 - LTR10E LTR ERV1 -554 79 1 13200 267 69 69 chr6 38125872 38126420 -151153134 - HERVI LTR ERV1 -1 7784 7237 5562 75 14 21 chr6 38126420 38127184 -151152370 + SVA Other Other 627 1385 -1 13200 267 69 69 chr6 38127184 38127243 -151152311 - HERVI LTR ERV1 -548 7237 7179 2118 101 47 0 chr6 38127243 38127521 -151152033 - AluSg SINE Alu -19 291 1 13200 267 69 69 chr6 38127521 38134564 -151144990 - HERVI LTR ERV1 -606 7179 26 2043 173 49 103 chr6 38134605 38135218 -151144336 - LTR10E LTR ERV1 -42 591 12 8349 214 36 21 chr6 38135228 38136376 -151143178 - L1 LINE L1 -2873 3975 2845 3805 96 2 4 chr6 38136376 38136888 -151142666 - MER9 LTR ERVK 0 511 1 8349 214 36 21 chr6 38136888 38137334 -151142220 - L1 LINE L1 -4003 2845 2407 2237 113 0 28 chr6 38137334 38137652 -151141902 + AluSc SINE Alu 1 309 0 8349 214 36 21 chr6 38137652 38139075 -151140479 - L1 LINE L1 -4441 2407 913 331 26 0 0 chr6 38139208 38139247 -151140307 + (TTTG)n Simple_repeat Simple_repeat 2 168 0 2057 128 3 3 chr6 38139247 38139529 -151140025 - AluSg SINE Alu -1 320 1 345 186 44 62 chr6 38139547 38139660 -151139894 + L1MA7 LINE L1 6178 6288 -3 309 316 23 8 chr6 38139676 38139809 -151139745 - L1MDa LINE L1 -4631 1909 1775 7441 48 2 0 chr6 38140053 38141185 -151138369 + L1PA5 LINE L1 5020 6153 -1 875 282 8 8 chr6 38141185 38141437 -151138117 + MLT2D LTR ERVL 14 265 -149 1369 223 6 57 chr6 38141438 38141788 -151137766 + MER21-int LTR ERV1 2341 2672 -1519 629 218 14 27 chr6 38141788 38141935 -151137619 + MSTA LTR MaLR 1 145 -283 347 260 0 0 chr6 38141935 38142008 -151137546 + MER21-int LTR ERV1 2667 2739 -1452 428 266 63 0 chr6 38142014 38142157 -151137397 + FRAM SINE Alu 16 167 -9 1164 264 17 43 chr6 38142167 38142479 -151137075 + MER21-int LTR ERV1 2742 3046 -1145 4449 169 18 17 chr6 38142479 38143261 -151136293 - LTR39 LTR ERV1 0 783 1 1164 264 17 43 chr6 38143261 38143296 -151136258 + MER21-int LTR ERV1 3046 3080 -1111 776 43 0 0 chr6 38143296 38143388 -151136166 - MER9 LTR ERVK -419 92 1 5112 189 39 27 chr6 38143391 38143834 -151135720 - L1M2 LINE L1 -4025 2824 2388 2215 116 0 28 chr6 38143834 38144152 -151135402 + AluSc SINE Alu 1 309 0 5112 189 39 27 chr6 38144152 38144962 -151134592 - L1M2 LINE L1 -4461 2388 1556 * 40959 75 4 6 chr6 38144958 38150309 -151129245 - L1P LINE L1 -793 5353 11 1566 217 3 3 chr6 38150412 38150707 -151128847 + AluJo SINE Alu 1 295 -17 1802 247 4 43 chr6 38150765 38151230 -151128324 + MER21B LTR ERV1 19 465 -398 598 273 132 41 chr6 38151231 38151550 -151128004 + MSTD LTR MaLR 1 348 -17 1876 149 8 62 chr6 38151561 38151917 -151127637 + MER1B DNA MER1_type 1 337 0 1526 173 17 88 chr6 38151953 38152544 -151127010 + MER4A LTR ERV1 1 465 0 914 249 51 33 chr6 38152557 38152830 -151126724 + MER21B LTR ERV1 505 782 -81 4804 55 12 14 chr6 38152861 38153896 -151125658 - MER11A LTR ERVK 0 1266 1 23 0 0 0 chr6 38154142 38154165 -151125389 + AT_rich Low_complexity Low_complexity 1 23 0 3202 128 20 49 chr6 38154523 38155153 -151124401 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 38155277 38155367 -151124187 - LTR19C LTR ERV1 0 779 686 1647 110 10 93 chr6 38155368 38155669 -151123885 - LTR9 LTR ERV1 -336 276 1 451 289 21 84 chr6 38155674 38155961 -151123593 + LTR67 LTR ERVL 185 453 -104 242 287 64 11 chr6 38156450 38156544 -151123010 + MER5A DNA MER1_type 4 102 -87 1664 252 111 26 chr6 38156647 38157702 -151121852 + L2 LINE L2 2107 3252 -61 949 318 46 17 chr6 38163152 38163743 -151115811 - L1MEc LINE L1 -4155 2241 1634 244 271 31 21 chr6 38163933 38164029 -151115525 + C-rich Low_complexity Low_complexity 4 100 0 1982 238 60 41 chr6 38164053 38164717 -151114837 - L1ME1 LINE L1 -112 6054 5378 268 297 31 31 chr6 38164738 38164866 -151114688 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 38164874 38165014 -151114540 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 38165081 38165210 -151114344 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 38166472 38166638 -151112916 + A-rich Low_complexity Low_complexity 1 158 0 5261 93 21 3 chr6 38169061 38169789 -151109765 + L1PA8A LINE L1 5388 6128 -3 872 87 10 1 chr6 38169797 38169926 -151109628 + L1PA13 LINE L1 5655 5790 -373 2852 72 0 41 chr6 38171215 38171630 -151107924 + L1PA13 LINE L1 5766 6163 0 930 278 53 60 chr6 38171831 38172095 -151107459 + L1MEc LINE L1 1516 1776 -4620 2432 18 0 18 chr6 38172095 38172377 -151107177 + AluY SINE Alu 35 311 0 930 278 53 60 chr6 38172377 38172641 -151106913 + L1MEc LINE L1 1776 2040 -4356 342 92 46 15 chr6 38172654 38172719 -151106835 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 38172719 38172754 -151106800 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 38173043 38173336 -151106218 + AluJo SINE Alu 1 289 -23 1834 54 13 5 chr6 38173640 38173864 -151105690 - AluY SINE Alu -85 226 1 974 208 34 78 chr6 38174639 38175024 -151104530 - L1MC5 LINE L1 -509 7452 7085 697 271 174 12 chr6 38175069 38175397 -151104157 + L1ME3A LINE L1 5615 5995 -175 431 284 50 58 chr6 38179106 38179483 -151100071 - L1ME LINE L1 -4863 1679 1306 308 343 17 42 chr6 38179469 38179705 -151099849 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 38180114 38180194 -151099360 - L1ME LINE L1 -5937 697 613 1817 170 0 7 chr6 38180359 38180653 -151098901 + AluJb SINE Alu 1 292 -20 423 0 0 0 chr6 38181288 38181335 -151098219 + (TG)n Simple_repeat Simple_repeat 1 47 0 593 288 82 29 chr6 38181399 38181724 -151097830 + MERVL LTR ERVL 3330 3633 -2021 480 318 34 17 chr6 38181764 38181997 -151097557 + MERVL LTR ERVL 3739 3975 -1789 420 299 112 74 chr6 38182354 38182990 -151096564 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 38183684 38183954 -151095600 + MIR SINE MIR 11 262 0 618 219 40 61 chr6 38185378 38185656 -151093898 + L1MB8 LINE L1 4140 4411 -1735 3237 207 61 24 chr6 38185658 38186972 -151092582 + L1MB8 LINE L1 4806 6162 -16 2748 199 8 4 chr6 38187838 38188336 -151091218 + MLT1D LTR MaLR 1 500 -5 322 273 11 23 chr6 38188630 38188718 -151090836 - MLT2E LTR ERVL -510 118 32 4207 72 2 2 chr6 38188993 38189532 -151090022 - L1PA8 LINE L1 -5 6167 5629 423 327 34 17 chr6 38190704 38191099 -151088455 + MERVL LTR ERVL 3792 4246 -1518 1435 102 32 0 chr6 38191271 38191458 -151088096 - AluSq SINE Alu -120 193 1 1372 183 88 111 chr6 38191495 38191971 -151087583 - MER4C LTR ERV1 0 465 1 925 229 10 0 chr6 38191975 38192176 -151087378 - MER4C-int LTR ERV1 -1 6597 6395 262 246 33 57 chr6 38192205 38192327 -151087227 - MER4C-int LTR ERV1 -170 6428 6310 394 228 150 0 chr6 38192331 38192458 -151087096 - MER4C LTR ERV1 -205 260 158 5693 116 45 42 chr6 38192508 38192896 -151086658 - LTR49-int LTR ERV1 -520 5811 5426 2174 102 7 3 chr6 38192896 38193190 -151086364 - AluSp SINE Alu -18 295 1 5693 116 45 42 chr6 38193190 38193646 -151085908 - LTR49-int LTR ERV1 -905 5426 4961 2332 102 0 0 chr6 38193646 38193949 -151085605 + AluSg SINE Alu 1 303 -7 5693 116 45 42 chr6 38193949 38194140 -151085414 - LTR49-int LTR ERV1 -1370 4961 4772 2107 104 7 7 chr6 38194141 38194448 -151085106 + AluSg SINE Alu 1 307 0 838 184 18 64 chr6 38194450 38194668 -151084886 - LTR49-int LTR ERV1 -1969 2911 2704 1824 110 4 4 chr6 38194676 38194922 -151084632 - AluSc SINE Alu -63 246 1 1208 218 66 122 chr6 38194922 38195482 -151084072 - LTR49-int LTR ERV1 -3538 2408 1818 2485 93 0 0 chr6 38195482 38195792 -151083762 + AluSg SINE Alu 1 310 0 1208 218 66 122 chr6 38195792 38196097 -151083457 - LTR49-int LTR ERV1 -4128 1818 1001 2295 74 25 3 chr6 38196159 38196443 -151083111 - AluSc SINE Alu -19 290 1 620 148 87 54 chr6 38196455 38196604 -151082950 - LTR49-int LTR ERV1 -5184 1147 994 258 156 22 0 chr6 38196621 38196666 -151082888 - LTR49 LTR ERV1 -287 308 263 3348 78 41 0 chr6 38197284 38197719 -151081835 + MLT2A2 LTR ERVL 1 453 0 2227 104 3 0 chr6 38197906 38198204 -151081350 - AluSp SINE Alu -14 299 1 289 348 0 0 chr6 38199067 38199156 -151080398 - MER82 DNA MER2_type -61 592 504 2409 74 14 0 chr6 38199497 38199793 -151079761 - AluY SINE Alu -11 300 1 8673 219 48 25 chr6 38199793 38200640 -151078914 - HERV3 LTR ERV1 -1084 7342 6516 2592 40 0 13 chr6 38200640 38200942 -151078612 - AluY SINE Alu -13 298 1 8673 219 48 25 chr6 38200942 38201922 -151077632 - HERV3 LTR ERV1 -1910 6516 5469 1143 178 12 89 chr6 38201923 38202044 -151077510 - LTR61 LTR ERV1 -329 266 174 2348 90 0 0 chr6 38202044 38202333 -151077221 + AluY SINE Alu 1 289 -22 1143 178 12 89 chr6 38202333 38202469 -151077085 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 38202469 38202493 -151077061 + (TTA)n Simple_repeat Simple_repeat 1 24 0 957 311 44 21 chr6 38202624 38203058 -151076496 + LTR33 LTR ERVL 10 453 -68 2291 92 7 0 chr6 38203061 38203355 -151076199 + AluSp SINE Alu 1 296 -17 225 91 0 0 chr6 38203356 38203389 -151076165 + LTR33 LTR ERVL 485 517 -4 2241 99 17 3 chr6 38204082 38204384 -151075170 - AluSq SINE Alu -7 306 1 553 130 98 0 chr6 38204777 38204900 -151074654 + L1MB7 LINE L1 6037 6171 -13 537 267 144 25 chr6 38204913 38205354 -151074200 + L1ME3A LINE L1 5434 5937 -233 561 234 22 54 chr6 38205821 38206005 -151073549 + MER3 DNA MER1_type 4 181 -28 694 132 9 9 chr6 38206022 38206136 -151073418 - MER9 LTR ERVK 0 511 398 3674 96 8 6 chr6 38206138 38206651 -151072903 - HERVK9 LTR ERVK -821 5095 4582 1842 70 4 0 chr6 38206650 38206880 -151072674 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 78 4 9 chr6 38206881 38209626 -151069928 - HERVK9 LTR ERVK -3131 2785 1 3674 113 0 6 chr6 38209626 38210140 -151069414 - MER9 LTR ERVK 0 511 1 1736 104 0 0 chr6 38210449 38210730 -151068824 - AluSg/x SINE Alu 0 346 66 2235 98 34 0 chr6 38210956 38211253 -151068301 + AluSx SINE Alu 1 307 -5 952 161 6 12 chr6 38211315 38211476 -151068078 - FRAM SINE Alu -17 159 1 23 0 0 0 chr6 38211806 38211829 -151067725 + AT_rich Low_complexity Low_complexity 1 23 0 2092 137 7 7 chr6 38213564 38213894 -151065660 + AluSx SINE Alu 1 312 0 2018 144 0 7 chr6 38214180 38214478 -151065076 - AluSq SINE Alu -17 296 1 2243 154 21 5 chr6 38214891 38215275 -151064279 - MLT1B LTR MaLR 0 390 1 648 70 0 0 chr6 38215300 38215386 -151064168 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2280 120 0 0 chr6 38215398 38215706 -151063848 - AluSx SINE Alu -4 308 1 597 286 40 0 chr6 38216746 38216921 -151062633 + MLT1G1 LTR MaLR 11 192 -403 1681 186 73 13 chr6 38217046 38217525 -151062029 - L1M4 LINE L1 -3828 3020 2513 1373 243 48 6 chr6 38217531 38217864 -151061690 - MLT2C2 LTR ERVL -116 348 2 3755 211 19 34 chr6 38217867 38218299 -151061255 - ERVL-C2 LTR ERVL -7 5757 5342 1572 190 11 18 chr6 38218299 38218617 -151060937 - AluJb SINE Alu 0 316 1 3755 211 19 34 chr6 38218617 38219064 -151060490 - ERVL-C2 LTR ERVL -422 5342 4890 16052 203 23 20 chr6 38219066 38222838 -151056716 + L1PA12 LINE L1 1328 5902 -1682 684 265 132 0 chr6 38222837 38223026 -151056528 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 38223218 38223311 -151056243 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 38223324 38223523 -151056031 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 38223682 38223945 -151055609 + MLT2D LTR ERVL 1 264 -150 1423 224 6 54 chr6 38223947 38224296 -151055258 + MER21-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 38224296 38224433 -151055121 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 38224436 38224511 -151055043 + MER21-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 38224517 38224646 -151054908 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 38224646 38224977 -151054577 + MER21-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 38224977 38225752 -151053802 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 38225752 38226004 -151053550 + MER21-int LTR ERV1 3062 3312 -879 2493 200 39 16 chr6 38226103 38226667 -151052887 + MER21-int LTR ERV1 3463 4039 -152 27636 48 3 3 chr6 38226682 38227056 -151052498 - L1PA6 LINE L1 -4 6150 5777 2372 92 3 3 chr6 38227056 38227362 -151052192 - AluY SINE Alu -5 306 1 27636 48 3 3 chr6 38227362 38231146 -151048408 - L1PA6 LINE L1 -377 5777 1993 748 95 0 0 chr6 38231153 38231248 -151048306 - AluY SINE Alu -161 150 56 1278 141 5 10 chr6 38231255 38231447 -151048107 - AluSx SINE Alu -121 191 1 2196 104 3 0 chr6 38231459 38231761 -151047793 - AluSp SINE Alu 0 303 1 1285 73 6 0 chr6 38231834 38231998 -151047556 - L1PA8 LINE L1 -14 6158 5994 1874 144 35 3 chr6 38232000 38232284 -151047270 - AluSx SINE Alu -18 294 2 45 0 0 0 chr6 38232284 38232329 -151047225 + AT_rich Low_complexity Low_complexity 1 45 0 1003 209 118 31 chr6 38232329 38232520 -151047034 - L1ME2 LINE L1 -2 6162 5989 2245 108 3 0 chr6 38232520 38232816 -151046738 - AluSx SINE Alu -15 297 1 1003 209 118 31 chr6 38232816 38232945 -151046609 - L1ME2 LINE L1 -175 5989 5814 1163 124 26 26 chr6 38232954 38233147 -151046407 - AluSc SINE Alu -15 294 102 948 103 0 0 chr6 38233147 38233273 -151046281 + AluSp/q SINE Alu 166 291 -22 564 257 158 0 chr6 38233273 38233425 -151046129 + FRAM SINE Alu 1 40 0 2014 109 14 3 chr6 38233530 38233813 -151045741 - AluSx SINE Alu -23 289 4 2337 90 0 7 chr6 38233858 38234158 -151045396 - AluSg SINE Alu -12 298 1 2550 61 0 0 chr6 38234332 38234629 -151044925 + AluY SINE Alu 1 297 -14 1846 149 20 23 chr6 38234652 38234953 -151044601 - AluSx SINE Alu -12 300 1 2024 129 27 0 chr6 38234975 38235269 -151044285 - AluSq SINE Alu -11 302 1 2076 127 3 10 chr6 38235426 38235733 -151043821 - AluSx SINE Alu -7 305 1 990 159 0 6 chr6 38235733 38235896 -151043658 - AluSg/x SINE Alu -6 304 143 501 169 8 85 chr6 38236347 38236422 -151043132 + MER5A DNA MER1_type 1 65 -124 2350 82 0 3 chr6 38236422 38236738 -151042816 + AluSq SINE Alu 1 313 0 501 169 8 85 chr6 38236738 38236780 -151042774 + MER5A DNA MER1_type 65 109 -80 348 335 46 57 chr6 38237027 38237308 -151042246 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 38237817 38237855 -151041699 + AT_rich Low_complexity Low_complexity 1 38 0 4101 138 17 124 chr6 38237891 38239435 -151040119 + pTR5 LTR ERV1 744 2606 0 667 119 10 0 chr6 38239476 38239577 -151039977 - FRAM SINE Alu -34 142 41 2140 79 18 0 chr6 38239854 38240132 -151039422 - AluSx SINE Alu -29 283 1 2211 107 7 7 chr6 38241036 38241346 -151038208 - AluSx SINE Alu -2 310 1 1820 151 10 16 chr6 38241378 38241682 -151037872 + AluJb SINE Alu 1 302 -10 216 97 0 0 chr6 38241684 38241715 -151037839 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 2221 107 4 0 chr6 38241805 38242086 -151037468 + AluSq SINE Alu 14 295 -18 1179 224 28 50 chr6 38242792 38243114 -151036440 + MLT1A2 LTR MaLR 56 370 -4 423 192 98 62 chr6 38243192 38243385 -151036169 - L2 LINE L2 0 3313 3114 2214 108 0 0 chr6 38243402 38243679 -151035875 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 38243688 38243712 -151035842 + (TA)n Simple_repeat Simple_repeat 2 25 0 1049 259 108 9 chr6 38243716 38244187 -151035367 - MLT1G1 LTR MaLR -57 498 15 344 265 70 32 chr6 38244194 38244232 -151035322 - L2 LINE L2 -163 3150 3115 2402 103 0 3 chr6 38244232 38244542 -151035012 + AluSc SINE Alu 1 309 0 344 265 70 32 chr6 38244542 38244688 -151034866 - L2 LINE L2 -198 3115 2959 3684 130 18 12 chr6 38246059 38246657 -151032897 + LTR43 LTR ERV1 1 602 0 15694 2 0 7 chr6 38246657 38246999 -151032555 + LTR43-int LTR ERV1 1 344 -4454 2377 99 0 3 chr6 38246999 38247302 -151032252 - AluSg SINE Alu -7 303 2 15694 2 0 7 chr6 38247302 38247943 -151031611 + LTR43-int LTR ERV1 344 988 -3810 2292 94 7 0 chr6 38247943 38248229 -151031325 + AluSp SINE Alu 5 292 -21 15694 2 0 7 chr6 38248229 38248844 -151030710 + LTR43-int LTR ERV1 988 1588 -3210 2282 110 0 7 chr6 38248844 38249144 -151030410 - AluSx SINE Alu -14 298 1 15694 2 0 7 chr6 38249144 38249347 -151030207 + LTR43-int LTR ERV1 1588 1791 -3007 476 145 261 29 chr6 38250504 38250642 -151028912 - MIR SINE MIR -1 261 92 903 102 8 16 chr6 38250643 38250770 -151028784 + AluJb SINE Alu 1 126 -186 2323 92 0 16 chr6 38250792 38251096 -151028458 + AluSg SINE Alu 3 301 -9 300 188 0 0 chr6 38251097 38251145 -151028409 - MIR SINE MIR -163 99 52 2389 101 7 0 chr6 38251192 38251498 -151028056 + AluSg SINE Alu 1 308 -2 2513 77 0 0 chr6 38256705 38257002 -151022552 + AluSg SINE Alu 2 298 -12 507 115 48 29 chr6 38257440 38257544 -151022010 + MER50 LTR ERV1 499 604 -130 667 164 0 9 chr6 38257572 38257682 -151021872 + FLAM_C SINE Alu 2 110 -33 25 0 0 0 chr6 38257713 38257738 -151021816 + AT_rich Low_complexity Low_complexity 1 25 0 2190 130 3 0 chr6 38257756 38258056 -151021498 + AluSx SINE Alu 3 303 -9 1988 118 33 0 chr6 38258290 38258562 -151020992 - AluSx SINE Alu -31 281 1 2110 77 19 0 chr6 38258567 38258828 -151020726 - AluSp SINE Alu -14 299 34 389 234 311 22 chr6 38258839 38259061 -151020493 - L2 LINE L2 -609 2705 2420 355 238 234 13 chr6 38259062 38259289 -151020265 - L2 LINE L2 -1042 2272 1996 258 266 73 16 chr6 38259459 38259583 -151019971 + MIR SINE MIR 131 261 -1 1695 189 7 7 chr6 38261219 38261521 -151018033 - AluJo SINE Alu -10 302 1 438 211 114 63 chr6 38264629 38264804 -151014750 + MIR3 SINE MIR 7 190 -18 1598 115 0 100 chr6 38265038 38265317 -151014237 + AluSx SINE Alu 1 251 -61 365 310 65 32 chr6 38266563 38266779 -151012775 + MIR SINE MIR 40 262 0 2264 73 7 0 chr6 38266994 38267266 -151012288 + AluSq SINE Alu 1 274 -39 2538 72 0 7 chr6 38267374 38267680 -151011874 - AluY SINE Alu -7 304 1 327 257 152 86 chr6 38268396 38268653 -151010901 + L2 LINE L2 2175 2448 -866 402 325 103 34 chr6 38269151 38269529 -151010025 + L2 LINE L2 2458 2861 -453 1407 101 0 11 chr6 38269952 38270140 -151009414 + AluSg/x SINE Alu 99 284 -26 300 186 0 0 chr6 38270140 38270199 -151009355 + (TA)n Simple_repeat Simple_repeat 1 59 0 1642 163 7 24 chr6 38270235 38270523 -151009031 - AluJb SINE Alu -14 298 16 2417 47 0 20 chr6 38271280 38271577 -151007977 + AluY SINE Alu 1 291 -20 1666 75 133 61 chr6 38271589 38271867 -151007687 + AluSx SINE Alu 1 298 -14 1445 92 0 5 chr6 38271941 38272163 -151007391 - AluSq SINE Alu 0 327 107 321 26 0 0 chr6 38272168 38272206 -151007348 + (TA)n Simple_repeat Simple_repeat 1 38 0 3710 128 28 0 chr6 38272206 38272777 -151006777 - Harlequin LTR ERV1 -424 6472 5886 * 14787 81 13 3 chr6 38272771 38274788 -151004766 - Harlequin LTR ERV1 -1509 5387 3352 6627 41 39 9 chr6 38274787 38275761 -151003793 - Harlequin LTR ERV1 -4322 2574 1572 * 6224 70 37 16 chr6 38275746 38276630 -151002924 - Harlequin LTR ERV1 -5993 903 1 * 3764 52 23 0 chr6 38276630 38277109 -151002445 - LTR2B LTR ERV1 0 490 1 450 207 0 5 chr6 38277127 38277234 -151002320 + L1PA15 LINE L1 6025 6129 -36 2357 113 0 0 chr6 38277244 38277553 -151002001 + AluSx SINE Alu 1 309 -3 2221 86 31 7 chr6 38277751 38278043 -151001511 - AluSx SINE Alu -13 299 1 530 167 0 0 chr6 38278047 38278149 -151001405 - L1PA15 LINE L1 -13 6152 6051 2450 71 0 3 chr6 38278417 38278711 -151000843 - AluY SINE Alu -16 295 3 2155 123 3 26 chr6 38278724 38279033 -151000521 - AluY SINE Alu -9 302 1 1078 109 0 27 chr6 38279033 38279169 -151000385 - AluSq/x SINE Alu -179 134 1 2231 109 3 0 chr6 38279190 38279483 -151000071 - AluSp SINE Alu -19 294 1 53 30 0 0 chr6 38279485 38279552 -151000002 + AT_rich Low_complexity Low_complexity 1 67 0 1218 78 6 0 chr6 38279553 38279720 -150999834 - L1PA8 LINE L1 -11 6161 5994 879 138 0 0 chr6 38279722 38279845 -150999709 - AluSg/x SINE Alu -18 292 170 1453 122 10 0 chr6 38279845 38280050 -150999504 + AluSg/x SINE Alu 87 293 -19 432 0 0 0 chr6 38282633 38282681 -150996873 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1747 86 0 0 chr6 38282702 38282911 -150996643 + AluSq SINE Alu 82 290 -23 274 295 6 66 chr6 38282936 38283102 -150996452 + L2 LINE L2 3095 3250 -63 219 291 105 12 chr6 38283482 38283568 -150995986 - MIR3 SINE MIR -112 96 3 264 290 97 35 chr6 38283934 38284079 -150995475 + L2 LINE L2 3119 3272 0 261 287 70 9 chr6 38284673 38284788 -150994766 + MIR SINE MIR 32 153 -109 221 308 77 11 chr6 38284792 38284883 -150994671 - L2 LINE L2 -20 3252 3156 1093 142 0 12 chr6 38285030 38285192 -150994362 + AluJb SINE Alu 134 293 -19 180 0 0 0 chr6 38285192 38285212 -150994342 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1582 154 57 57 chr6 38285351 38285500 -150994054 - AluJo SINE Alu -14 298 150 2289 59 42 7 chr6 38285500 38285788 -150993766 - AluY SINE Alu -12 299 2 1582 154 57 57 chr6 38285788 38285936 -150993618 - AluJo SINE Alu -161 151 1 810 175 7 14 chr6 38285937 38286080 -150993474 - FLAM_A SINE Alu 0 142 1 254 174 0 0 chr6 38286084 38286140 -150993414 - FLAM_A SINE Alu -2 131 87 2343 97 0 19 chr6 38286400 38286711 -150992843 + AluSg SINE Alu 1 305 -5 505 243 112 56 chr6 38286719 38286933 -150992621 + MIR SINE MIR 6 231 -31 351 175 16 0 chr6 38286978 38287041 -150992513 - LTR16C LTR ERVL -2 489 426 1710 150 62 0 chr6 38287054 38287328 -150992226 + AluJb SINE Alu 1 291 -21 2272 108 0 3 chr6 38287330 38287618 -150991936 + AluSx SINE Alu 1 287 -25 234 0 0 0 chr6 38287621 38287647 -150991907 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1969 169 3 0 chr6 38287658 38287953 -150991601 + AluJo SINE Alu 1 296 -16 21 36 0 0 chr6 38288854 38288882 -150990672 + AT_rich Low_complexity Low_complexity 1 28 0 2352 95 0 7 chr6 38289064 38289368 -150990186 - AluSx SINE Alu -7 305 4 2569 60 0 10 chr6 38289381 38289695 -150989859 - AluY SINE Alu 0 311 1 375 167 39 212 chr6 38289871 38289912 -150989642 - Charlie2 DNA MER1_type -28 2834 2788 1888 157 7 3 chr6 38289912 38290206 -150989348 - AluJb SINE Alu -17 295 1 375 167 39 212 chr6 38290206 38290311 -150989243 - Charlie2 DNA MER1_type -74 2788 2765 1864 105 82 8 chr6 38290311 38290607 -150988947 - AluSx SINE Alu 0 316 1 375 167 39 212 chr6 38290607 38290768 -150988786 - Charlie2 DNA MER1_type -97 2765 2578 1710 154 19 68 chr6 38290845 38291170 -150988384 + AluJb SINE Alu 1 309 -3 2163 137 0 13 chr6 38291195 38291510 -150988044 + AluSx SINE Alu 1 311 -1 382 237 0 0 chr6 38291634 38291710 -150987844 - Charlie2 DNA MER1_type -2761 101 26 2452 78 7 0 chr6 38291959 38292266 -150987288 + AluSg SINE Alu 1 309 -1 * 2556 52 10 3 chr6 38292265 38292573 -150986981 + AluY SINE Alu 1 310 -1 197 0 71 0 chr6 38293443 38293471 -150986083 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 208 304 43 0 chr6 38295060 38295129 -150984425 + L2 LINE L2 2301 2372 -942 182 265 125 73 chr6 38295286 38295422 -150984132 + L2 LINE L2 2572 2714 -600 2397 73 7 20 chr6 38295426 38295726 -150983828 + AluSp SINE Alu 1 296 -17 396 168 126 2 chr6 38295731 38295813 -150983741 + AluJ/FLAM SINE Alu 1 79 -223 1420 146 39 39 chr6 38296166 38296420 -150983134 - AluJo SINE Alu -32 280 27 1017 63 24 0 chr6 38296420 38296546 -150983008 + AluSp/q SINE Alu 167 295 -18 2276 115 3 3 chr6 38296594 38296906 -150982648 - AluSx SINE Alu 0 312 1 181 247 253 47 chr6 38297042 38297212 -150982342 + L2 LINE L2 3001 3205 -108 376 281 126 61 chr6 38298728 38298867 -150980687 + L1MC4 LINE L1 7716 7845 -197 2171 113 3 0 chr6 38298867 38299160 -150980394 + AluSc SINE Alu 6 299 -10 376 281 126 61 chr6 38299160 38299283 -150980271 + L1MC4 LINE L1 7845 7995 -47 1836 164 0 3 chr6 38299285 38299578 -150979976 - AluSx SINE Alu -20 292 1 338 148 16 0 chr6 38299578 38299639 -150979915 + L1ME3A LINE L1 6043 6104 -66 2148 119 7 3 chr6 38301147 38301449 -150978105 + AluSx SINE Alu 1 303 -9 2404 82 0 3 chr6 38302202 38302496 -150977058 + AluSg SINE Alu 1 293 -17 2195 94 7 42 chr6 38302755 38303064 -150976490 + AluSx SINE Alu 1 298 -14 2451 94 0 3 chr6 38303946 38304253 -150975301 + AluSx SINE Alu 7 312 0 248 179 0 54 chr6 38304400 38304456 -150975098 + L2 LINE L2 3015 3067 -246 1751 152 3 21 chr6 38304499 38304788 -150974766 - AluJb SINE Alu -4 308 25 638 94 0 0 chr6 38304792 38304877 -150974677 + AluS SINE Alu 3 87 -225 364 268 256 6 chr6 38304908 38305072 -150974482 + L2 LINE L2 3106 3310 -3 274 244 171 8 chr6 38306354 38306477 -150973077 + L2 LINE L2 2496 2638 -676 256 285 130 40 chr6 38306672 38306872 -150972682 + L2 LINE L2 3024 3241 -72 192 261 0 0 chr6 38307035 38307081 -150972473 + L2 LINE L2 2701 2746 -568 2420 56 49 0 chr6 38307084 38307372 -150972182 + AluY SINE Alu 1 302 -9 2307 125 0 0 chr6 38307406 38307710 -150971844 - AluSx SINE Alu -8 304 1 827 118 0 8 chr6 38307728 38307847 -150971707 - FLAM_C SINE Alu -15 118 1 1758 120 80 11 chr6 38308069 38308345 -150971209 - AluSx SINE Alu -17 295 1 490 292 84 34 chr6 38308350 38308646 -150970908 - L1M LINE L1 -813 5333 5039 2345 103 0 0 chr6 38308651 38308942 -150970612 - AluSg SINE Alu -17 293 3 209 295 49 98 chr6 38308964 38309147 -150970407 + L2 LINE L2 3024 3197 -75 21 0 0 0 chr6 38310210 38310231 -150969323 + AT_rich Low_complexity Low_complexity 1 21 0 2585 66 0 0 chr6 38310387 38310689 -150968865 + AluY SINE Alu 1 302 -9 1672 184 21 0 chr6 38310871 38311153 -150968401 - AluJo SINE Alu -24 288 1 316 313 61 9 chr6 38311185 38311300 -150968254 - MIR3 SINE MIR -84 124 4 181 173 0 135 chr6 38311609 38311661 -150967893 + L2 LINE L2 3184 3228 -44 476 145 261 29 chr6 38315269 38315407 -150964147 - MIR SINE MIR -1 261 92 903 102 8 16 chr6 38315408 38315535 -150964019 + AluJb SINE Alu 1 126 -186 2323 92 0 16 chr6 38315557 38315861 -150963693 + AluSg SINE Alu 3 301 -9 300 188 0 0 chr6 38315862 38315910 -150963644 - MIR SINE MIR -163 99 52 2389 101 7 0 chr6 38315957 38316263 -150963291 + AluSg SINE Alu 1 308 -2 2174 97 4 0 chr6 38318720 38319034 -150960520 - AluSq SINE Alu 0 319 5 522 207 37 0 chr6 38319089 38319224 -150960330 - L1MD3 LINE L1 -12 7983 7844 760 339 77 16 chr6 38319809 38320119 -150959435 + MER115 DNA AcHobo 6 334 -359 724 237 6 35 chr6 38320189 38320272 -150959282 + MER115 DNA AcHobo 445 522 -171 611 230 83 89 chr6 38320272 38320494 -150959060 - LTR16A1 LTR ERVL 0 457 235 2211 92 0 7 chr6 38320494 38320806 -150958748 + AluSq SINE Alu 1 310 0 611 230 83 89 chr6 38320806 38321042 -150958512 - LTR16A1 LTR ERVL -222 235 1 724 237 6 35 chr6 38321042 38321131 -150958423 + MER115 DNA AcHobo 522 612 -81 875 88 0 22 chr6 38322158 38322294 -150957260 + FLAM_C SINE Alu 1 133 0 656 132 20 123 chr6 38322330 38322399 -150957155 + L1MB4 LINE L1 5765 5839 -341 207 0 0 0 chr6 38322399 38322422 -150957132 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2276 74 0 11 chr6 38322424 38322707 -150956847 - AluSx SINE Alu -31 281 2 656 132 20 123 chr6 38322707 38322838 -150956716 + L1MB4 LINE L1 5840 5947 -233 753 147 0 70 chr6 38322908 38323051 -150956503 + FLAM_C SINE Alu 1 133 0 911 174 5 54 chr6 38323052 38323236 -150956318 + L1MB4 LINE L1 5954 6145 -35 2253 96 0 0 chr6 38323236 38323517 -150956037 + AluSx SINE Alu 1 281 -31 225 0 0 0 chr6 38323521 38323546 -150956008 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 911 174 5 54 chr6 38323546 38323580 -150955974 + L1MB4 LINE L1 6148 6166 -14 371 113 16 0 chr6 38323590 38323652 -150955902 + (CA)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chr6 38323704 38323728 -150955826 + AT_rich Low_complexity Low_complexity 1 24 0 672 173 17 23 chr6 38323750 38323923 -150955631 - L1MB4 LINE L1 -233 5947 5776 2018 148 3 0 chr6 38323938 38324235 -150955319 + AluJb SINE Alu 1 298 -14 2362 107 0 0 chr6 38324255 38324564 -150954990 - AluSp SINE Alu -4 309 1 310 262 114 74 chr6 38324595 38324893 -150954661 + L1M2 LINE L1 1743 2052 -4797 1299 150 4 53 chr6 38324979 38325226 -150954328 + AluJo SINE Alu 1 235 -77 1803 133 65 6 chr6 38325437 38325761 -150953793 + MER61A LTR ERV1 1 343 0 632 120 96 32 chr6 38326177 38326302 -150953252 + FLAM_C SINE Alu 1 133 0 470 205 86 8 chr6 38326688 38326805 -150952749 + MIR SINE MIR 70 195 -67 1881 115 48 24 chr6 38326807 38326944 -150952610 + AluSx SINE Alu 1 133 -179 2362 96 20 0 chr6 38326944 38327245 -150952309 + AluSx SINE Alu 1 307 -5 1881 115 48 24 chr6 38327245 38327402 -150952152 + AluSx SINE Alu 133 302 -10 484 268 32 25 chr6 38327418 38327575 -150951979 - MIR SINE MIR 0 262 105 405 0 0 0 chr6 38328158 38328203 -150951351 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2160 116 0 0 chr6 38328211 38328488 -150951066 - AluSx SINE Alu -35 277 1 767 104 22 44 chr6 38329331 38329466 -150950088 - MLT1B LTR MaLR -243 147 16 1749 157 11 31 chr6 38329853 38330164 -150949390 + AluJb SINE Alu 1 305 0 352 291 11 84 chr6 38330216 38330395 -150949159 + L1MC4 LINE L1 6765 6930 -1112 1802 168 27 3 chr6 38330395 38330693 -150948861 + AluJb SINE Alu 1 305 -7 249 33 0 0 chr6 38330705 38330735 -150948819 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 349 230 63 94 chr6 38330736 38330927 -150948627 + L1MC4 LINE L1 6896 7080 -962 25 0 0 0 chr6 38330975 38331000 -150948554 + AT_rich Low_complexity Low_complexity 1 25 0 4352 122 17 33 chr6 38331122 38331612 -150947942 + MER50 LTR ERV1 1 477 -257 2479 93 7 0 chr6 38331612 38331922 -150947632 + AluSx SINE Alu 1 312 0 4352 122 17 33 chr6 38331922 38332154 -150947400 + MER50 LTR ERV1 477 711 -23 2330 119 0 0 chr6 38332511 38332823 -150946731 - AluSx SINE Alu 0 312 1 3549 160 11 35 chr6 38332879 38333167 -150946387 + L1MB8 LINE L1 5432 5725 -453 198 103 0 0 chr6 38333167 38333196 -150946358 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3549 160 11 35 chr6 38333196 38333602 -150945952 + L1MB8 LINE L1 5725 6110 -68 2268 88 3 3 chr6 38333616 38333968 -150945586 - AluSp SINE Alu 0 352 1 3852 90 16 20 chr6 38333993 38334187 -150945367 - L1MA2 LINE L1 0 6304 6111 2060 150 0 0 chr6 38334187 38334487 -150945067 + AluSx SINE Alu 1 300 -12 3852 90 16 20 chr6 38334487 38334902 -150944652 - L1MA2 LINE L1 -193 6111 5697 10860 190 70 48 chr6 38334902 38335690 -150943864 - L1M1 LINE L1 -4385 3180 2410 2042 155 0 19 chr6 38335690 38336007 -150943547 + AluSx SINE Alu 1 311 -1 10860 190 70 48 chr6 38336007 38336166 -150943388 - L1M1 LINE L1 -5155 2410 2256 2337 99 0 7 chr6 38336166 38336468 -150943086 - AluSc SINE Alu -9 300 1 10860 190 70 48 chr6 38336468 38337223 -150942331 - L1M1 LINE L1 -5309 2256 1519 2114 130 7 0 chr6 38337223 38337522 -150942032 + AluSx SINE Alu 1 301 -11 10860 190 70 48 chr6 38337522 38338316 -150941238 - L1M1 LINE L1 -6046 1519 506 769 182 0 0 chr6 38338316 38338448 -150941106 - FLAM_C SINE Alu -1 132 1 10860 190 70 48 chr6 38338448 38338892 -150940662 - L1M1 LINE L1 -7059 506 73 1842 183 20 0 chr6 38338893 38339199 -150940355 + AluJb SINE Alu 1 312 0 2300 102 3 0 chr6 38339210 38339503 -150940051 + AluSq SINE Alu 1 294 -19 2404 97 0 0 chr6 38339563 38339861 -150939693 - AluSq SINE Alu -15 298 1 2374 60 4 4 chr6 38339917 38340245 -150939309 + AluY SINE Alu 1 328 0 2351 88 3 3 chr6 38340738 38341045 -150938509 + AluSc SINE Alu 1 307 -2 777 111 8 8 chr6 38341195 38341333 -150938221 + FLAM_C SINE Alu 1 138 0 410 228 41 76 chr6 38341760 38341946 -150937608 - MIR SINE MIR -27 181 33 257 57 0 57 chr6 38342117 38342170 -150937384 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2148 109 4 0 chr6 38342170 38342447 -150937107 - AluSq SINE Alu -1 340 11 231 36 0 0 chr6 38342447 38342475 -150937079 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 909 190 19 0 chr6 38342477 38342635 -150936919 - AluJ SINE Alu -38 274 114 1964 118 74 0 chr6 38342660 38342930 -150936624 - AluSg SINE Alu -20 290 1 904 138 7 22 chr6 38342959 38343097 -150936457 - AluJ SINE Alu -174 138 3 337 324 58 12 chr6 38343256 38343429 -150936125 + MIR SINE MIR 82 262 0 389 308 79 18 chr6 38343463 38343568 -150935986 + MIR SINE MIR 30 149 -113 2124 78 44 34 chr6 38343568 38343861 -150935693 - AluSx SINE Alu -16 296 1 389 308 79 18 chr6 38343861 38343930 -150935624 + MIR SINE MIR 149 212 -50 449 240 0 0 chr6 38344113 38344213 -150935341 - L2 LINE L2 -25 3288 3189 1792 210 48 56 chr6 38347438 38347937 -150931617 - MLT1D LTR MaLR -9 496 2 225 200 67 33 chr6 38348063 38348153 -150931401 + L1MC5 LINE L1 7834 7926 -35 210 37 0 0 chr6 38349267 38349294 -150930260 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 712 124 35 0 chr6 38352156 38352269 -150927285 + FLAM_C SINE Alu 2 118 -25 27 0 0 0 chr6 38352274 38352301 -150927253 + AT_rich Low_complexity Low_complexity 1 27 0 244 264 57 57 chr6 38353052 38353158 -150926396 + MIR SINE MIR 95 200 -62 2172 136 13 3 chr6 38353173 38353482 -150926072 - AluSq SINE Alu -1 312 1 669 261 27 69 chr6 38353771 38353955 -150925599 + MIR SINE MIR 14 185 -77 2121 126 3 26 chr6 38353955 38354265 -150925289 + AluSx SINE Alu 1 303 -9 669 261 27 69 chr6 38354265 38354340 -150925214 + MIR SINE MIR 185 262 0 372 317 87 1 chr6 38354430 38354624 -150924930 - MIR SINE MIR -57 205 1 463 245 182 0 chr6 38356125 38356268 -150923286 + MER3 DNA MER1_type 27 195 -14 441 321 73 24 chr6 38356406 38356571 -150922983 + MIR SINE MIR 20 192 -70 2324 92 0 7 chr6 38356833 38357128 -150922426 + AluSq SINE Alu 1 293 -20 263 98 27 2 chr6 38358544 38358592 -150920962 + FRAM/FAM SINE Alu 16 59 -116 454 277 115 65 chr6 38358650 38358868 -150920686 - MIR SINE MIR -8 254 30 2214 110 7 0 chr6 38359026 38359317 -150920237 + AluSx SINE Alu 1 293 -19 1159 251 100 97 chr6 38361815 38361868 -150917686 + HAL1 LINE L1 1120 1171 -1336 2085 127 33 7 chr6 38361868 38362167 -150917387 + AluSx SINE Alu 1 307 -5 1159 251 100 97 chr6 38362167 38362499 -150917055 + HAL1 LINE L1 1171 1500 -1007 1815 157 24 34 chr6 38362499 38362793 -150916761 - AluJo SINE Alu -2 310 20 1159 251 100 97 chr6 38362793 38363135 -150916419 + HAL1 LINE L1 1500 1854 -653 1945 148 23 13 chr6 38363135 38363440 -150916114 + AluSx SINE Alu 1 308 -4 1159 251 100 97 chr6 38363440 38363620 -150915934 + HAL1 LINE L1 1854 2032 -475 253 290 65 8 chr6 38363665 38363789 -150915765 + LTR67 LTR ERVL 427 557 0 22 56 0 0 chr6 38363983 38364019 -150915535 + AT_rich Low_complexity Low_complexity 1 36 0 1255 99 0 12 chr6 38364071 38364233 -150915321 + AluSq SINE Alu 1 160 -153 497 62 0 0 chr6 38364275 38364339 -150915215 + U6 snRNA snRNA 38 101 -6 1344 132 0 33 chr6 38364356 38364568 -150914986 + AluSx SINE Alu 3 207 -105 645 283 88 38 chr6 38365045 38365066 -150914488 + MIR SINE MIR 11 30 -232 2307 114 0 0 chr6 38365066 38365364 -150914190 + AluSx SINE Alu 1 298 -14 645 283 88 38 chr6 38365364 38365582 -150913972 + MIR SINE MIR 29 262 0 2104 127 21 3 chr6 38365983 38366274 -150913280 + AluJb SINE Alu 1 296 -16 2559 67 0 3 chr6 38366276 38366588 -150912966 + AluY SINE Alu 1 311 0 232 170 21 0 chr6 38366984 38367031 -150912523 + MER63 DNA MER1_type 6 53 -877 * 1379 239 55 0 chr6 38367009 38367352 -150912202 + MER63 DNA MER1_type 700 1061 0 2264 133 0 0 chr6 38367929 38368238 -150911316 - AluSg SINE Alu -1 309 1 294 293 248 8 chr6 38368844 38369086 -150910468 - L3 LINE CR1 -17 1560 1261 2165 107 7 10 chr6 38369530 38369828 -150909726 - AluSx SINE Alu -15 297 1 896 274 17 9 chr6 38370107 38370337 -150909217 + MIR SINE MIR 31 262 0 2158 137 0 10 chr6 38372273 38372579 -150906975 + AluSx SINE Alu 1 303 -9 948 193 76 57 chr6 38372609 38372812 -150906742 + L1ME2 LINE L1 5887 6098 -66 2101 163 0 0 chr6 38372812 38373118 -150906436 + AluJb SINE Alu 1 306 -6 948 193 76 57 chr6 38373118 38373178 -150906376 + L1ME2 LINE L1 6098 6155 -9 26 0 0 0 chr6 38373216 38373242 -150906312 + AT_rich Low_complexity Low_complexity 1 26 0 272 316 204 36 chr6 38373359 38373716 -150905838 - L2 LINE L2 0 3272 2856 1886 154 45 3 chr6 38373977 38374269 -150905285 + AluJo SINE Alu 1 304 -8 1437 254 133 32 chr6 38374713 38375079 -150904475 + L1MD3 LINE L1 5896 6224 -1771 1737 161 50 17 chr6 38375079 38375377 -150904177 + AluJo SINE Alu 1 308 -4 1437 254 133 32 chr6 38375377 38375657 -150903897 + L1MD3 LINE L1 6224 6607 -1388 1584 136 168 0 chr6 38375661 38375970 -150903584 + MER46B DNA MER2_type 1 236 0 1129 248 33 13 chr6 38375971 38376270 -150903284 + L1MC4 LINE L1 6624 6928 -1114 2078 132 6 10 chr6 38376271 38376582 -150902972 + AluSp SINE Alu 1 310 -3 1783 201 0 0 chr6 38376597 38376895 -150902659 + AluJo SINE Alu 1 298 -14 896 186 48 12 chr6 38376908 38377075 -150902479 + FRAM SINE Alu 1 169 -7 1165 161 54 0 chr6 38377075 38377299 -150902255 + L1MD3 LINE L1 6889 7124 -871 1019 130 0 0 chr6 38377322 38377460 -150902094 + AluSp SINE Alu 153 290 -23 561 174 101 0 chr6 38377502 38377651 -150901903 + L1MD3 LINE L1 7832 7995 0 261 183 17 17 chr6 38377674 38377734 -150901820 + L1ME1 LINE L1 6096 6155 -11 1965 135 0 11 chr6 38377850 38378132 -150901422 + AluJb SINE Alu 2 280 -32 810 81 0 0 chr6 38378134 38378245 -150901309 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2019 103 59 18 chr6 38378581 38378922 -150900632 + THE1A LTR MaLR 1 355 0 1640 195 0 7 chr6 38380008 38380305 -150899249 + AluJo SINE Alu 18 312 0 2240 129 0 0 chr6 38380315 38380618 -150898936 + AluSx SINE Alu 1 303 -9 510 17 0 0 chr6 38380634 38380693 -150898861 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 3130 133 18 6 chr6 38382516 38383005 -150896549 - LTR42 LTR ERVL 0 495 1 2249 104 3 7 chr6 38383857 38384155 -150895399 + AluSg SINE Alu 1 297 -13 2427 71 3 3 chr6 38384841 38385135 -150894419 - AluSq SINE Alu -19 294 1 2270 91 7 0 chr6 38385814 38386099 -150893455 - AluSx SINE Alu -25 287 1 466 253 73 101 chr6 38386701 38387029 -150892525 + MLT1J LTR MaLR 109 427 -84 2022 151 6 6 chr6 38387731 38388066 -150891488 + AluJb SINE Alu 1 335 0 2121 149 0 3 chr6 38388068 38388376 -150891178 + AluJo SINE Alu 1 307 -5 289 238 90 58 chr6 38389281 38389470 -150890084 + L2 LINE L2 3030 3224 -89 2313 112 0 3 chr6 38389576 38389879 -150889675 + AluSx SINE Alu 5 306 -6 594 210 16 0 chr6 38389891 38390015 -150889539 + FLAM_C SINE Alu 3 128 -5 504 266 8 0 chr6 38390030 38390154 -150889400 + MER104 DNA Tc2 53 177 -3 2390 102 0 0 chr6 38390248 38390543 -150889011 - AluSg SINE Alu -15 295 1 217 329 12 12 chr6 38390704 38390789 -150888765 - L2 LINE L2 -179 3093 3009 436 284 43 81 chr6 38390794 38391005 -150888549 - MIR SINE MIR -30 232 30 191 355 84 0 chr6 38391046 38391153 -150888401 - L3b LINE CR1 -289 1294 1179 187 231 0 0 chr6 38391185 38391224 -150888330 - L2 LINE L2 -81 3191 3153 11158 44 5 64 chr6 38391573 38393040 -150886514 - SVA Other Other -1295 1385 1 894 71 39 50 chr6 38393056 38393238 -150886316 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr6 38393238 38393262 -150886292 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 597 251 30 12 chr6 38394173 38394340 -150885214 - MER104 DNA Tc2 -7 173 4 787 153 0 0 chr6 38394372 38394490 -150885064 + FLAM_C SINE Alu 5 122 -21 270 136 0 0 chr6 38394490 38394534 -150885020 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 322 76 17 chr6 38394617 38394735 -150884819 - L2 LINE L2 0 3313 3189 227 264 111 14 chr6 38394804 38394876 -150884678 + MIR3 SINE MIR 5 83 -125 657 69 0 0 chr6 38395043 38395130 -150884424 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 25 31 0 0 chr6 38395159 38395191 -150884363 + AT_rich Low_complexity Low_complexity 1 32 0 1318 196 0 24 chr6 38395191 38395446 -150884108 - AluJb SINE Alu -57 255 7 2060 98 0 33 chr6 38396446 38396751 -150882803 + AluSq SINE Alu 1 295 -18 1528 171 49 3 chr6 38396843 38397147 -150882407 + MER33 DNA MER1_type 1 318 -6 226 289 112 20 chr6 38397791 38397943 -150881611 + L1ME4a LINE L1 5616 5781 -340 1589 106 113 4 chr6 38398051 38398328 -150881226 + AluSx SINE Alu 1 305 0 1705 151 122 82 chr6 38398478 38398513 -150881041 - MLT2D LTR ERVL 0 414 382 228 35 0 0 chr6 38398513 38398542 -150881012 + (TC)n Simple_repeat Simple_repeat 1 29 0 1705 151 122 82 chr6 38398542 38398898 -150880656 - MLT2D LTR ERVL -32 382 7 1722 167 0 17 chr6 38398901 38399194 -150880360 + AluJb SINE Alu 1 288 -24 35 24 0 0 chr6 38399194 38399236 -150880318 + AT_rich Low_complexity Low_complexity 1 42 0 1263 206 0 40 chr6 38399842 38400090 -150879464 - MER8 DNA MER2_type -1 238 1 2030 109 10 3 chr6 38400099 38400402 -150879152 - AluSx SINE Alu -7 305 1 877 203 27 0 chr6 38400713 38400900 -150878654 + AluJo SINE Alu 121 312 0 366 250 20 40 chr6 38400900 38401000 -150878554 + L1ME4a LINE L1 5966 6063 -58 1734 148 13 10 chr6 38401016 38401314 -150878240 - AluJb SINE Alu -13 299 1 1753 166 0 7 chr6 38401318 38401639 -150877915 - AluJb SINE Alu 0 319 1 1993 110 0 26 chr6 38402158 38402467 -150877087 - AluSp SINE Alu -12 301 1 538 281 116 36 chr6 38402485 38402586 -150876968 + HAL1 LINE L1 17 109 -2398 239 0 32 0 chr6 38402586 38402617 -150876937 + (GA)n Simple_repeat Simple_repeat 1 32 0 538 281 116 36 chr6 38402617 38402928 -150876626 + HAL1 LINE L1 109 462 -2045 1323 172 161 11 chr6 38402975 38403236 -150876318 + AluJo SINE Alu 1 300 -2 808 104 49 49 chr6 38403245 38403389 -150876165 - LTR47B LTR ERVL -299 144 1 323 234 13 0 chr6 38403389 38403449 -150876105 + LTR47A LTR ERVL 392 452 0 367 325 79 35 chr6 38403728 38403956 -150875598 + HAL1 LINE L1 1114 1351 -1156 349 131 0 213 chr6 38403956 38403989 -150875565 + L1MB8 LINE L1 6080 6118 -60 2205 87 0 32 chr6 38403989 38404300 -150875254 - AluSx SINE Alu -11 301 1 349 131 0 213 chr6 38404300 38404321 -150875233 + L1MB8 LINE L1 6118 6142 -36 2060 124 0 13 chr6 38404321 38404635 -150874919 - AluSx SINE Alu -2 310 1 349 131 0 213 chr6 38404635 38404701 -150874853 + L1MB8 LINE L1 6142 6175 -3 2081 119 0 10 chr6 38404743 38405038 -150874516 + AluSx SINE Alu 1 292 -20 1962 266 78 88 chr6 38405368 38406281 -150873273 + Charlie2b DNA MER1_type 1 921 -1861 535 239 207 9 chr6 38406281 38406494 -150873060 + MIR SINE MIR 5 259 -3 1962 266 78 88 chr6 38406494 38406514 -150873040 + Charlie2b DNA MER1_type 921 940 -1842 2112 113 3 0 chr6 38406514 38406816 -150872738 + AluSx SINE Alu 1 303 -9 1962 266 78 88 chr6 38406816 38406920 -150872634 + Charlie2b DNA MER1_type 940 1029 -1753 471 134 109 17 chr6 38406920 38407039 -150872515 + Charlie2b DNA MER1_type 2297 2426 -356 1255 143 43 0 chr6 38407040 38407249 -150872305 + L1MC1 LINE L1 5920 6137 -196 639 155 19 0 chr6 38407254 38407357 -150872197 + L1MC1 LINE L1 6223 6327 -6 850 221 44 72 chr6 38407435 38407556 -150871998 + Charlie2b DNA MER1_type 2425 2548 -314 850 141 0 30 chr6 38407556 38407691 -150871863 + FLAM_C SINE Alu 2 132 -1 850 221 44 72 chr6 38407691 38407931 -150871623 + Charlie2b DNA MER1_type 2548 2776 -6 743 268 24 6 chr6 38408827 38408991 -150870563 + MIR SINE MIR 11 177 -85 2067 90 27 27 chr6 38409226 38409525 -150870029 - AluSg SINE Alu -1 309 11 1005 151 155 8 chr6 38409562 38409813 -150869741 - L1MA9 LINE L1 -5 6307 6020 21 57 0 0 chr6 38409898 38409933 -150869621 + AT_rich Low_complexity Low_complexity 1 35 0 814 136 0 0 chr6 38409937 38410055 -150869499 - FLAM_C SINE Alu -25 118 1 750 251 20 5 chr6 38410061 38410256 -150869298 - L1ME3 LINE L1 -62 6100 5903 4494 109 19 6 chr6 38411888 38412569 -150866985 - L1PB1 LINE L1 -2 6149 5460 394 253 41 89 chr6 38413171 38413317 -150866237 - L2 LINE L2 0 3272 3134 323 281 58 22 chr6 38413442 38413581 -150865973 + L2 LINE L2 1536 1679 -1635 187 307 20 89 chr6 38413584 38413685 -150865869 - MER5A DNA MER1_type -15 174 81 206 250 0 0 chr6 38413777 38413813 -150865741 + C-rich Low_complexity Low_complexity 1 39 -9 2033 117 3 3 chr6 38413813 38414113 -150865441 - AluSx SINE Alu -12 300 1 206 250 0 0 chr6 38414113 38414124 -150865430 + C-rich Low_complexity Low_complexity 38 48 0 865 216 0 0 chr6 38414352 38414514 -150865040 - FRAM SINE Alu -4 162 1 430 236 47 99 chr6 38414568 38414801 -150864753 - HAL1 LINE L1 -204 2303 2083 716 258 112 75 chr6 38414829 38415283 -150864271 - HAL1 LINE L1 -387 2120 1650 620 229 73 42 chr6 38415290 38415482 -150864072 - MLT1J1 LTR MaLR -7 439 242 1409 253 44 39 chr6 38415571 38416029 -150863525 - MER74B LTR ERVL -93 529 70 420 276 0 0 chr6 38416119 38416206 -150863348 - MLT1J1 LTR MaLR -324 122 36 2842 241 88 35 chr6 38416224 38417297 -150862257 - HAL1 LINE L1 -851 1656 527 7007 126 182 66 chr6 38417304 38418824 -150860730 + pTR5 LTR ERV1 742 2437 -1 453 276 76 85 chr6 38418837 38419283 -150860271 - HAL1 LINE L1 -1991 516 75 1389 287 153 34 chr6 38419321 38420126 -150859428 + L2 LINE L2 1822 2722 -592 1989 114 0 0 chr6 38420257 38420530 -150859024 + AluSx SINE Alu 1 273 -39 594 302 79 18 chr6 38420646 38421101 -150858453 + L1MEc LINE L1 1279 1882 -4725 721 71 0 10 chr6 38421127 38421226 -150858328 - AluSp SINE Alu -10 303 206 7942 127 68 119 chr6 38421226 38423014 -150856540 + pTR5 LTR ERV1 743 2438 0 1121 109 42 36 chr6 38423017 38423209 -150856345 - AluSp SINE Alu -104 209 17 1325 237 68 81 chr6 38423264 38423621 -150855933 + L1MEc LINE L1 1965 2325 -4282 1882 149 13 0 chr6 38423621 38423922 -150855632 + AluSx SINE Alu 6 310 -2 1325 237 68 81 chr6 38423922 38424020 -150855534 + L1MEc LINE L1 2325 2423 -4184 1510 199 0 30 chr6 38424020 38424321 -150855233 + AluJb SINE Alu 1 292 -20 1325 237 68 81 chr6 38424321 38424641 -150854913 + L1MEc LINE L1 2423 2731 -3876 * 2018 246 107 0 chr6 38424621 38425202 -150854352 + L1MC4 LINE L1 7257 7899 -143 638 296 181 41 chr6 38425499 38425657 -150853897 + L2 LINE L2 2841 2976 -337 1933 92 82 0 chr6 38425657 38425938 -150853616 - AluSp SINE Alu -9 304 1 638 296 181 41 chr6 38425938 38426194 -150853360 + L2 LINE L2 2976 3313 0 2399 70 0 0 chr6 38431026 38431325 -150848229 + AluY SINE Alu 1 299 -12 805 248 81 14 chr6 38431591 38431801 -150847753 + MER58A DNA MER1_type 1 224 0 2128 139 3 0 chr6 38432318 38432649 -150846905 - L1PB1 LINE L1 -8 6143 5812 1903 157 3 0 chr6 38433675 38433981 -150845573 + AluSx SINE Alu 1 307 -5 730 127 18 30 chr6 38433986 38434151 -150845403 + GA-rich Low_complexity Low_complexity 1 163 0 913 226 55 0 chr6 38434408 38434607 -150844947 - MER63A DNA MER1_type 0 210 1 456 364 62 4 chr6 38434806 38435031 -150844523 - MIR SINE MIR -17 245 8 200 262 0 0 chr6 38436243 38436285 -150843269 - L2 LINE L2 -20 3293 3252 2288 77 0 7 chr6 38436305 38436604 -150842950 + AluSx SINE Alu 1 297 -15 38389 68 9 4 chr6 38437254 38438391 -150841163 + HERVL-A1 LTR ERVL 879 2009 -3645 2161 101 10 0 chr6 38438391 38438688 -150840866 + AluSg SINE Alu 3 302 -8 38389 68 9 4 chr6 38438688 38442302 -150837252 + HERVL-A1 LTR ERVL 2009 5654 0 3114 59 86 0 chr6 38442302 38442711 -150836843 + MLT2A1 LTR ERVL 1 444 0 506 141 0 0 chr6 38442711 38442782 -150836772 - MSTA LTR MaLR -357 71 1 2057 199 62 85 chr6 38444085 38444767 -150834787 - LTR65 LTR ERV1 -3 666 1 209 103 26 0 chr6 38444852 38444883 -150834671 + GA-rich Low_complexity Low_complexity 1 35 -5 2333 92 3 0 chr6 38444883 38445176 -150834378 + AluSq SINE Alu 1 294 -19 500 348 20 25 chr6 38445972 38446216 -150833338 - MIR SINE MIR -5 257 15 2321 98 0 3 chr6 38446221 38446517 -150833037 - AluSg SINE Alu -15 295 1 602 144 32 0 chr6 38446603 38446728 -150832826 + L1MA7 LINE L1 6145 6273 -18 2729 199 163 13 chr6 38446745 38447493 -150832061 - MER21B LTR ERV1 -1 862 3 2154 129 26 0 chr6 38447551 38447853 -150831701 + AluSx SINE Alu 1 310 -2 609 268 32 11 chr6 38447896 38448086 -150831468 - L1ME3 LINE L1 -8 6154 5961 645 186 10 106 chr6 38448107 38448306 -150831248 - AluSg/x SINE Alu -13 297 118 863 136 8 15 chr6 38448415 38448547 -150831007 - AluJb SINE Alu -179 133 3 312 317 20 20 chr6 38449594 38449695 -150829859 + L1MEd LINE L1 442 542 -5577 254 256 37 12 chr6 38449896 38449978 -150829576 - MIR SINE MIR -15 247 164 41 0 0 0 chr6 38450550 38450591 -150828963 + AT_rich Low_complexity Low_complexity 1 41 0 515 187 0 0 chr6 38450661 38450752 -150828802 + FRAM SINE Alu 22 112 -64 383 268 10 88 chr6 38450757 38450951 -150828603 + L1MEd LINE L1 657 835 -5284 21 0 0 0 chr6 38450964 38450985 -150828569 + AT_rich Low_complexity Low_complexity 1 21 0 4041 84 19 84 chr6 38450985 38451553 -150828001 - L1MA1 LINE L1 0 6302 5698 2234 107 13 13 chr6 38451553 38451863 -150827691 - AluSg SINE Alu 0 310 1 2423 110 0 0 chr6 38451867 38452177 -150827377 - AluSg SINE Alu 0 310 1 4041 84 19 84 chr6 38452177 38452338 -150827216 - L1MA1 LINE L1 -607 5695 5616 534 308 39 0 chr6 38452348 38452504 -150827050 + MLT1J LTR MaLR 16 177 -334 1975 171 40 26 chr6 38453145 38453571 -150825983 + MSTB1 LTR MaLR 1 432 0 467 265 112 18 chr6 38455072 38455242 -150824312 + MIR SINE MIR 2 187 -75 2142 138 3 0 chr6 38455282 38455586 -150823968 + AluSx SINE Alu 1 305 -7 2258 119 0 0 chr6 38455586 38455959 -150823595 + AluSx SINE Alu 1 373 0 316 259 82 37 chr6 38456247 38456382 -150823172 - MER5A DNA MER1_type -12 177 37 514 258 45 68 chr6 38456634 38456695 -150822859 + MIR SINE MIR 46 107 -155 2318 66 56 0 chr6 38456695 38456983 -150822571 - AluSp SINE Alu -9 304 1 514 258 45 68 chr6 38456983 38457142 -150822412 + MIR SINE MIR 107 261 -1 1592 135 8 35 chr6 38460454 38460714 -150818840 - AluJo SINE Alu -59 253 1 730 224 79 0 chr6 38460921 38461086 -150818468 + LTR47A LTR ERVL 275 452 0 368 333 18 23 chr6 38461103 38461274 -150818280 + LTR47A-int LTR ERVL 15 184 -5159 2055 128 24 0 chr6 38462250 38462538 -150817016 + AluSx SINE Alu 1 295 -17 2487 83 3 0 chr6 38462539 38462840 -150816714 + AluSq SINE Alu 1 302 -11 366 339 50 53 chr6 38463272 38463611 -150815943 + HERVL18 LTR ERVL 1523 1860 -4187 10156 27 0 112 chr6 38463627 38465063 -150814491 - SVA Other Other 0 1386 154 5272 77 3 15 chr6 38465339 38465819 -150813735 - L1PA13 LINE L1 0 6163 5694 2266 101 3 3 chr6 38465819 38466117 -150813437 - AluSp SINE Alu -15 298 1 5272 77 3 15 chr6 38466117 38466387 -150813167 - L1PA13 LINE L1 -469 5694 5422 419 100 0 0 chr6 38466387 38466447 -150813107 - AluSp/q SINE Alu -22 291 232 3499 152 2 3 chr6 38466447 38467147 -150812407 - L1PA13 LINE L1 -736 5438 4740 487 320 32 62 chr6 38467167 38467221 -150812333 + HERVL18 LTR ERVL 2314 2368 -2975 2363 110 0 0 chr6 38467221 38467530 -150812024 - AluSg SINE Alu -1 309 1 487 320 32 62 chr6 38467530 38467816 -150811738 + HERVL18 LTR ERVL 2368 2644 -2699 676 300 19 19 chr6 38468252 38468559 -150810995 + HERVL18 LTR ERVL 3275 3581 -2466 2483 74 7 0 chr6 38468788 38469085 -150810469 + AluSp SINE Alu 1 299 -14 207 0 0 0 chr6 38469085 38469108 -150810446 + (TA)n Simple_repeat Simple_repeat 1 23 0 526 193 126 0 chr6 38469118 38469237 -150810317 + AluJo SINE Alu 3 136 -176 187 315 0 0 chr6 38469390 38469444 -150810110 + L3 LINE CR1 567 620 -957 280 149 0 0 chr6 38470377 38470424 -150809130 + MER4B-int LTR ERV1 5922 5968 -790 278 359 61 15 chr6 38470408 38470501 -150809053 + MER4B-int LTR ERV1 6402 6489 -633 * 1982 133 0 27 chr6 38470501 38470801 -150808753 + AluSx SINE Alu 21 312 0 278 359 61 15 chr6 38470801 38470969 -150808585 + MER4B-int LTR ERV1 6489 6675 -447 590 182 0 58 chr6 38471176 38471297 -150808257 + MER4B-int LTR ERV1 5968 6081 -677 4431 128 184 109 chr6 38471348 38472649 -150806905 + pTR5 LTR ERV1 741 2438 0 622 181 54 60 chr6 38472859 38472964 -150806590 + LTR47A LTR ERVL 288 393 -59 1866 146 23 85 chr6 38472964 38473286 -150806268 - LTR47B LTR ERVL 0 443 158 1809 174 0 10 chr6 38473286 38473596 -150805958 + AluJo SINE Alu 1 307 -5 1866 146 23 85 chr6 38473596 38473745 -150805809 - LTR47B LTR ERVL -285 158 1 622 181 54 60 chr6 38473745 38473805 -150805749 + LTR47A LTR ERVL 393 452 0 353 346 70 26 chr6 38474084 38474312 -150805242 + HAL1 LINE L1 1114 1351 -1156 348 115 0 213 chr6 38474312 38474345 -150805209 + L1MB8 LINE L1 6080 6118 -60 2323 93 0 32 chr6 38474345 38474656 -150804898 - AluSx SINE Alu -11 301 1 348 115 0 213 chr6 38474656 38474677 -150804877 + L1MB8 LINE L1 6118 6142 -36 2169 115 0 40 chr6 38474677 38474857 -150804697 - AluSx SINE Alu -2 310 147 2610 11 0 0 chr6 38474857 38475134 -150804420 - AluYb8 SINE Alu -8 310 34 2169 115 0 40 chr6 38475134 38475276 -150804278 - AluSx SINE Alu -165 147 1 348 115 0 213 chr6 38475276 38475342 -150804212 + L1MB8 LINE L1 6142 6175 -3 2205 122 0 35 chr6 38475384 38475703 -150803851 + AluSx SINE Alu 1 308 -4 1891 266 76 94 chr6 38476009 38476933 -150802621 + Charlie2b DNA MER1_type 1 939 -1843 475 245 204 9 chr6 38476933 38477149 -150802405 + MIR SINE MIR 5 262 0 1891 266 76 94 chr6 38477149 38477166 -150802388 + Charlie2b DNA MER1_type 939 955 -1827 2254 116 3 0 chr6 38477166 38477468 -150802086 + AluSx SINE Alu 1 303 -9 1891 266 76 94 chr6 38477468 38477572 -150801982 + Charlie2b DNA MER1_type 955 1029 -1753 442 134 109 17 chr6 38477572 38477691 -150801863 + Charlie2b DNA MER1_type 2297 2426 -356 1189 144 43 0 chr6 38477692 38477900 -150801654 + L1MC1 LINE L1 5920 6136 -197 611 155 19 0 chr6 38477906 38478009 -150801545 + L1MC1 LINE L1 6223 6327 -6 786 224 44 72 chr6 38478089 38478210 -150801344 + Charlie2b DNA MER1_type 2425 2548 -314 826 141 0 30 chr6 38478210 38478345 -150801209 + FLAM_C SINE Alu 2 132 -1 786 224 44 72 chr6 38478345 38478585 -150800969 + Charlie2b DNA MER1_type 2548 2776 -6 695 268 24 6 chr6 38479482 38479646 -150799908 + MIR SINE MIR 11 177 -85 2186 97 27 27 chr6 38479882 38480182 -150799372 - AluSg SINE Alu 0 310 11 921 155 155 8 chr6 38480219 38480470 -150799084 - L1MA9 LINE L1 -5 6307 6020 21 57 0 0 chr6 38480555 38480590 -150798964 + AT_rich Low_complexity Low_complexity 1 35 0 879 136 0 0 chr6 38480594 38480712 -150798842 - FLAM_C SINE Alu -25 118 1 737 251 20 5 chr6 38480718 38480913 -150798641 - L1ME3 LINE L1 -62 6100 5903 222 239 282 0 chr6 38481301 38481372 -150798182 + L2 LINE L2 3183 3273 -40 304 229 49 104 chr6 38484646 38484829 -150794725 - MER5A DNA MER1_type 0 189 17 335 203 351 14 chr6 38485517 38485665 -150793889 + MIR SINE MIR 1 198 -64 29 28 0 0 chr6 38485733 38485769 -150793785 + AT_rich Low_complexity Low_complexity 1 36 0 223 261 14 14 chr6 38487060 38487129 -150792425 - MIR3 SINE MIR -19 189 121 194 276 0 92 chr6 38487769 38487836 -150791718 - MIR SINE MIR -58 204 145 1877 154 0 47 chr6 38487836 38488007 -150791547 - AluJb SINE Alu -8 304 153 2213 126 0 13 chr6 38488007 38488316 -150791238 - AluSx SINE Alu -7 305 1 1877 154 0 47 chr6 38488316 38488463 -150791091 - AluJb SINE Alu -159 153 1 194 276 0 92 chr6 38488463 38488482 -150791072 - MIR SINE MIR -117 145 126 384 259 152 44 chr6 38488521 38488791 -150790763 - MLT1J LTR MaLR -3 508 210 850 285 88 44 chr6 38488817 38489273 -150790281 - L2 LINE L2 -20 3293 2818 825 186 120 11 chr6 38489322 38489505 -150790049 - MER3 DNA MER1_type -6 203 1 183 286 36 0 chr6 38489505 38489561 -150789993 - L2 LINE L2 -504 2810 2753 820 215 93 15 chr6 38489561 38489766 -150789788 - MLT1J LTR MaLR -289 222 2 2131 100 30 17 chr6 38490371 38490670 -150788884 - AluSx SINE Alu -9 303 1 2634 103 11 0 chr6 38490931 38491308 -150788246 - LTR57 LTR ERVL -30 381 1 332 258 2 25 chr6 38491308 38491404 -150788150 - MIR SINE MIR -63 145 69 374 260 70 50 chr6 38491678 38491821 -150787733 + MIR SINE MIR 45 188 -63 466 130 0 0 chr6 38493379 38493456 -150786098 - HY1 scRNA scRNA 0 112 36 396 206 43 0 chr6 38493708 38493800 -150785754 - MIR SINE MIR -118 144 49 498 75 0 0 chr6 38494187 38494254 -150785300 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 388 88 29 15 chr6 38494254 38494322 -150785232 - AluSq SINE Alu 0 302 234 1503 88 5 0 chr6 38494322 38494516 -150785038 - AluSq SINE Alu -118 195 1 267 299 82 0 chr6 38494582 38494679 -150784875 - MIR SINE MIR -92 170 66 980 284 116 14 chr6 38496115 38496428 -150783126 - L1M4 LINE L1 -1002 5144 4758 2370 70 0 7 chr6 38496428 38496728 -150782826 - AluSq SINE Alu -15 298 1 980 284 116 14 chr6 38496728 38496922 -150782632 - L1M4 LINE L1 -1388 4758 4585 247 228 13 38 chr6 38498370 38498449 -150781105 + MIR SINE MIR 89 165 -97 * 384 199 108 17 chr6 38498429 38498576 -150780978 - MIR SINE MIR 0 262 101 379 227 45 83 chr6 38498562 38498694 -150780860 + MIR SINE MIR 136 262 0 * 286 352 83 0 chr6 38499120 38499265 -150780289 + MIR3 SINE MIR 32 188 -20 252 306 102 36 chr6 38499580 38499776 -150779778 + MIR SINE MIR 20 228 -34 1078 189 32 23 chr6 38499973 38500190 -150779364 - MER20 DNA MER1_type 0 219 1 390 202 90 11 chr6 38500664 38500753 -150778801 - L2 LINE L2 -15 3298 3203 520 301 82 11 chr6 38501940 38502123 -150777431 + MER91A DNA MER1_type 1 196 0 2172 119 0 6 chr6 38502208 38502520 -150777034 - AluSx SINE Alu 0 312 3 289 285 131 0 chr6 38502524 38502654 -150776900 - MIR SINE MIR -66 196 50 262 389 8 24 chr6 38502822 38502948 -150776606 - MIR SINE MIR -16 246 123 441 265 137 25 chr6 38504483 38504619 -150774935 - L1ME4a LINE L1 0 6121 5953 678 157 96 0 chr6 38504619 38504734 -150774820 - FLAM_C SINE Alu -3 130 5 441 265 137 25 chr6 38504734 38504801 -150774753 - L1ME4a LINE L1 -168 5953 5895 372 114 63 0 chr6 38504944 38505023 -150774531 + CT-rich Low_complexity Low_complexity 5 88 0 1878 154 23 0 chr6 38505029 38505334 -150774220 - AluSx SINE Alu 0 312 1 438 181 53 0 chr6 38506003 38506097 -150773457 - L2 LINE L2 0 3313 3215 234 0 0 0 chr6 38506097 38506123 -150773431 + (CAGGC)n Simple_repeat Simple_repeat 4 29 0 1222 206 11 35 chr6 38506124 38506430 -150773124 + AluJb SINE Alu 9 307 0 2217 109 0 0 chr6 38506433 38506736 -150772818 + AluY SINE Alu 1 303 -8 184 317 77 10 chr6 38506766 38506870 -150772684 - L2 LINE L2 -158 3155 3045 299 361 48 7 chr6 38507030 38507182 -150772372 - MIR SINE MIR -67 195 37 281 320 31 16 chr6 38507292 38507420 -150772134 + MIR SINE MIR 83 212 -50 634 254 27 23 chr6 38507525 38507745 -150771809 + MIR SINE MIR 39 259 -3 194 377 0 0 chr6 38507749 38507826 -150771728 + MIR3 SINE MIR 79 155 -53 315 188 54 80 chr6 38515217 38515329 -150764225 + L1ME LINE L1 707 815 -5255 250 299 103 0 chr6 38516802 38516899 -150762655 - MIR SINE MIR -90 172 66 222 336 46 46 chr6 38518681 38518961 -150760593 + L2 LINE L2 2065 2344 -970 466 273 106 0 chr6 38518968 38519100 -150760454 - L2 LINE L2 -5 3267 3122 2047 132 10 0 chr6 38519404 38519708 -150759846 + AluSg SINE Alu 1 307 -3 740 188 0 15 chr6 38519720 38519853 -150759701 + FLAM_C SINE Alu 3 133 0 240 158 88 18 chr6 38519857 38519914 -150759640 - MER5A DNA MER1_type -128 61 1 533 246 24 62 chr6 38520073 38520284 -150759270 - HAL1 LINE L1 -6 2501 2299 1572 210 35 40 chr6 38520396 38520436 -150759118 + MLT1A2 LTR MaLR 1 40 -334 1621 139 40 33 chr6 38520436 38520737 -150758817 - AluJo SINE Alu -9 303 1 1572 210 35 40 chr6 38520737 38521072 -150758482 + MLT1A2 LTR MaLR 40 374 0 26 30 0 0 chr6 38521117 38521150 -150758404 + AT_rich Low_complexity Low_complexity 1 33 0 2279 100 0 3 chr6 38521438 38521747 -150757807 - AluSx SINE Alu -4 308 1 282 194 0 0 chr6 38521956 38522018 -150757536 + CT-rich Low_complexity Low_complexity 3 64 0 564 185 0 0 chr6 38522051 38522159 -150757395 - L1MB3 LINE L1 0 6183 6076 1945 116 39 0 chr6 38522741 38523048 -150756506 + AluSq SINE Alu 1 313 0 279 297 161 0 chr6 38523294 38523412 -150756142 + L2 LINE L2 3136 3272 0 665 161 12 12 chr6 38523539 38523700 -150755854 + GA-rich Low_complexity Low_complexity 3 163 0 276 100 0 0 chr6 38523719 38523759 -150755795 + (GGGGA)n Simple_repeat Simple_repeat 1 40 0 1485 106 5 0 chr6 38524075 38524283 -150755271 - AluSp SINE Alu 0 313 105 2798 133 88 32 chr6 38524289 38524823 -150754731 + LTR9 LTR ERV1 49 612 0 24 0 0 0 chr6 38524998 38525022 -150754532 + AT_rich Low_complexity Low_complexity 1 24 0 221 268 10 82 chr6 38525506 38525603 -150753951 + MIR SINE MIR 36 125 -83 1278 201 73 28 chr6 38525810 38525954 -150753600 + AluJo SINE Alu 1 137 -165 2287 92 0 0 chr6 38525954 38526257 -150753297 + AluSg SINE Alu 1 303 -7 1278 201 73 28 chr6 38526257 38526400 -150753154 + AluJo SINE Alu 137 301 -1 399 309 36 26 chr6 38526403 38526597 -150752957 + MIR SINE MIR 48 243 -19 855 187 13 0 chr6 38527196 38527346 -150752208 - FRAM SINE Alu -4 172 21 1964 122 0 10 chr6 38528094 38528415 -150751139 - AluSq SINE Alu 0 313 3 1882 121 0 7 chr6 38528429 38528702 -150750852 - AluSx SINE Alu -5 307 37 1746 134 65 0 chr6 38529144 38529421 -150750133 - AluJb SINE Alu -16 296 2 213 111 0 28 chr6 38532543 38532579 -150746975 + (TCC)n Simple_repeat Simple_repeat 1 35 0 223 220 19 57 chr6 38533176 38533335 -150746219 + (CGGG)n Simple_repeat Simple_repeat 2 154 0 247 286 0 13 chr6 38533423 38533500 -150746054 + G-rich Low_complexity Low_complexity 3 78 0 229 187 0 53 chr6 38533590 38533665 -150745889 + C-rich Low_complexity Low_complexity 1 71 0 409 232 232 0 chr6 38535959 38536101 -150743453 - MER5A DNA MER1_type -1 188 14 182 375 98 0 chr6 38536165 38536277 -150743277 - L3 LINE CR1 -2 1575 1453 230 341 78 15 chr6 38536484 38536754 -150742800 - L1MC4a LINE L1 -1834 5974 5688 864 117 0 35 chr6 38536762 38536907 -150742647 - FLAM_C SINE Alu -1 142 3 302 304 33 21 chr6 38536910 38537329 -150742225 - L1MC4a LINE L1 -487 5675 5219 550 289 12 0 chr6 38537395 38537561 -150741993 + MIR SINE MIR 84 251 -11 443 238 0 57 chr6 38538497 38538619 -150740935 + L2 LINE L2 2204 2318 -996 816 113 8 16 chr6 38538619 38538743 -150740811 - FLAM_C SINE Alu -8 135 13 1323 265 78 26 chr6 38538744 38539464 -150740090 + L2 LINE L2 2308 3060 -253 369 43 0 0 chr6 38540537 38540584 -150738970 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 223 240 0 chr6 38540668 38540789 -150738765 - MER91B DNA MER1_type -1 189 40 304 269 140 31 chr6 38542584 38542777 -150736777 - LTR33 LTR ERVL -134 387 174 383 240 30 0 chr6 38542822 38542922 -150736632 - LTR33 LTR ERVL -418 103 1 2150 114 10 0 chr6 38542979 38543285 -150736269 + AluSq SINE Alu 1 309 -4 254 308 58 25 chr6 38543324 38543444 -150736110 + MIR SINE MIR 77 200 -62 412 160 51 29 chr6 38544014 38544189 -150735365 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 272 200 15 15 chr6 38544205 38544270 -150735284 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 1695 196 69 25 chr6 38549435 38549533 -150730021 - Charlie4a DNA MER1_type -1453 508 416 2143 140 7 3 chr6 38549533 38549841 -150729713 + AluSx SINE Alu 1 309 -3 1695 196 69 25 chr6 38549841 38550191 -150729363 - Charlie4a DNA MER1_type -1545 416 40 515 293 40 83 chr6 38550238 38550421 -150729133 + L3 LINE CR1 681 870 -707 1495 182 35 28 chr6 38550421 38550707 -150728847 + AluJo SINE Alu 11 298 -14 515 293 40 83 chr6 38550707 38550922 -150728632 + L3 LINE CR1 870 1062 -515 2435 83 0 7 chr6 38551064 38551366 -150728188 - AluSg SINE Alu -10 300 1 944 320 94 27 chr6 38551404 38552155 -150727399 + L2 LINE L2 2375 3174 -98 213 240 20 0 chr6 38552227 38552277 -150727277 + L3 LINE CR1 1295 1345 -232 * 316 268 137 40 chr6 38552276 38552493 -150727061 - MIR SINE MIR 0 262 26 2315 93 0 0 chr6 38552493 38552784 -150726770 - AluSg SINE Alu -19 291 1 316 268 137 40 chr6 38552784 38552798 -150726756 - MIR SINE MIR -236 26 15 1264 149 5 21 chr6 38552888 38553082 -150726472 + AluSg/x SINE Alu 90 280 -32 2140 136 0 16 chr6 38553121 38553438 -150726116 - AluJb SINE Alu 0 312 1 2182 128 13 0 chr6 38553531 38553836 -150725718 - AluSx SINE Alu -3 309 1 225 83 0 0 chr6 38553837 38553873 -150725681 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2087 106 14 14 chr6 38553873 38554157 -150725397 - AluSq SINE Alu -29 284 1 780 215 32 0 chr6 38554163 38554321 -150725233 - FRAM SINE Alu -21 155 1 1168 122 48 32 chr6 38554333 38554503 -150725051 - AluJb SINE Alu -1 311 136 2457 78 3 10 chr6 38554503 38554810 -150724744 - AluSq SINE Alu -6 307 3 1168 122 48 32 chr6 38554810 38554827 -150724727 - AluJb SINE Alu -176 136 121 257 183 0 28 chr6 38554910 38554981 -150724573 + CT-rich Low_complexity Low_complexity 1 69 0 1696 169 0 30 chr6 38554981 38555276 -150724278 - AluJo SINE Alu -26 286 1 225 154 0 0 chr6 38555278 38555317 -150724237 + T-rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 38555682 38555709 -150723845 + AT_rich Low_complexity Low_complexity 1 27 0 2292 113 0 7 chr6 38555724 38556024 -150723530 + AluSx SINE Alu 1 298 -14 714 129 76 8 chr6 38556043 38556175 -150723379 - FRAM SINE Alu -36 140 1 2410 84 7 3 chr6 38556496 38556806 -150722748 - AluSq SINE Alu -2 311 1 202 241 0 19 chr6 38557167 38557221 -150722333 + CT-rich Low_complexity Low_complexity 2 54 0 227 186 14 43 chr6 38557410 38557480 -150722074 + GA-rich Low_complexity Low_complexity 1 68 0 2267 128 0 3 chr6 38559304 38559617 -150719937 - AluSx SINE Alu 0 312 1 539 288 46 21 chr6 38561621 38561839 -150717715 + MIR SINE MIR 21 248 -14 23 0 0 0 chr6 38563207 38563230 -150716324 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr6 38565432 38565456 -150714098 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr6 38565456 38565479 -150714075 + AT_rich Low_complexity Low_complexity 1 23 0 180 237 0 0 chr6 38565797 38565835 -150713719 + L2 LINE L2 3225 3262 -10 893 269 25 12 chr6 38566255 38566497 -150713057 + MIR SINE MIR 13 257 -5 2337 84 3 0 chr6 38567035 38567344 -150712210 - AluSg SINE Alu 0 310 1 1231 92 0 65 chr6 38567966 38568150 -150711404 - AluSg/x SINE Alu -21 289 118 1044 64 7 43 chr6 38568183 38568323 -150711231 - AluY SINE Alu -176 135 1 317 153 62 181 chr6 38568333 38568477 -150711077 + MER58 DNA MER1_type 211 2416 -4 222 239 282 0 chr6 38569360 38569431 -150710123 + L2 LINE L2 3183 3273 -40 1147 180 59 69 chr6 38572507 38572732 -150706822 + MLT1A2 LTR MaLR 86 309 -65 1815 155 3 42 chr6 38572732 38572876 -150706678 + AluJb SINE Alu 1 128 -184 2369 93 0 3 chr6 38572876 38573176 -150706378 + AluSx SINE Alu 6 304 -8 1815 155 3 42 chr6 38573176 38573340 -150706214 + AluJb SINE Alu 128 297 -15 1147 180 59 69 chr6 38573340 38573403 -150706151 + MLT1A2 LTR MaLR 309 371 -3 1693 144 50 14 chr6 38573934 38574212 -150705342 - AluJo SINE Alu -24 288 1 1583 282 76 24 chr6 38574232 38574888 -150704666 - L1MC4a LINE L1 -1660 6148 5459 32 57 0 0 chr6 38575234 38575287 -150704267 + AT_rich Low_complexity Low_complexity 1 53 0 2341 108 0 3 chr6 38575494 38575801 -150703753 - AluSc SINE Alu -3 306 1 490 215 51 82 chr6 38575962 38576157 -150703397 - MLT1J LTR MaLR -33 478 290 2418 99 0 0 chr6 38576194 38576496 -150703058 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 38577015 38577040 -150702514 - MER72 LTR ERV1 0 722 698 1408 172 122 7 chr6 38577040 38577162 -150702392 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 38577162 38577188 -150702366 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1408 172 122 7 chr6 38577188 38577344 -150702210 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 38577344 38577391 -150702163 - MER72 LTR ERV1 -24 698 653 605 146 10 0 chr6 38577394 38577490 -150702064 + AluJ/FLAM SINE Alu 3 99 -213 1669 129 15 41 chr6 38577491 38577839 -150701715 - MER61C LTR ERV1 0 434 1 1092 159 0 0 chr6 38577876 38578046 -150701508 + FRAM SINE Alu 1 170 -6 1047 262 118 3 chr6 38578099 38578446 -150701108 - LTR16C LTR ERVL 0 491 105 4413 151 61 24 chr6 38578874 38579438 -150700116 + MER49 LTR ERV1 1 607 -316 2423 76 6 19 chr6 38579438 38579752 -150699802 - AluY SINE Alu -1 310 1 4413 151 61 24 chr6 38579752 38580020 -150699534 + MER49 LTR ERV1 607 864 -59 1380 159 0 14 chr6 38580020 38580240 -150699314 - AluJb SINE Alu -1 311 95 1541 129 20 31 chr6 38580240 38580582 -150698972 + MER61C LTR ERV1 3 434 0 205 222 10 61 chr6 38580816 38580915 -150698639 + GA-rich Low_complexity Low_complexity 2 95 0 198 0 0 0 chr6 38581896 38581918 -150697636 + (T)n Simple_repeat Simple_repeat 1 22 0 3907 127 44 2 chr6 38581936 38582550 -150697004 - LTR9B LTR ERV1 0 644 5 1735 143 8 11 chr6 38582555 38582821 -150696733 - AluSq SINE Alu -48 265 1 628 205 0 0 chr6 38582970 38583087 -150696467 + FLAM_C SINE Alu 1 117 -26 2419 99 0 3 chr6 38583091 38583403 -150696151 - AluSq SINE Alu 0 313 3 23 0 0 0 chr6 38583429 38583452 -150696102 + AT_rich Low_complexity Low_complexity 1 23 0 2366 106 0 3 chr6 38583452 38583764 -150695790 + AluSx SINE Alu 1 311 -1 812 94 0 0 chr6 38583839 38583945 -150695609 + AluSg/x SINE Alu 197 302 -8 1449 145 31 120 chr6 38584218 38584542 -150695012 + AluJo SINE Alu 1 295 -17 1514 244 82 69 chr6 38584703 38585339 -150694215 - MER21B LTR ERV1 -192 671 28 29 94 0 0 chr6 38585913 38585998 -150693556 + AT_rich Low_complexity Low_complexity 1 85 0 272 305 45 23 chr6 38586485 38586662 -150692892 - L1MC5 LINE L1 -52 7909 7729 2269 108 19 17 chr6 38587134 38587496 -150692058 + THE1B LTR MaLR 1 363 -1 2015 140 6 32 chr6 38587496 38587810 -150691744 + AluSx SINE Alu 1 306 -6 9554 100 43 43 chr6 38587823 38589402 -150690152 + THE1B-int LTR MaLR 2 1580 0 2064 141 36 30 chr6 38589402 38589758 -150689796 + THE1B LTR MaLR 1 367 -61 2290 109 23 0 chr6 38589758 38590062 -150689492 - AluSx SINE Alu -1 311 1 2064 141 36 30 chr6 38590062 38590125 -150689429 + THE1B LTR MaLR 367 428 0 848 238 9 53 chr6 38590150 38590437 -150689117 + L1ME1 LINE L1 5872 6291 -21 2583 68 0 3 chr6 38590460 38590771 -150688783 + AluY SINE Alu 1 310 -1 3760 139 19 17 chr6 38590933 38591122 -150688432 - MER41B LTR ERV1 -2 633 446 2053 112 58 0 chr6 38591122 38591416 -150688138 - AluSx SINE Alu -1 311 1 3760 139 19 17 chr6 38591416 38591858 -150687696 - MER41B LTR ERV1 -189 446 1 1189 278 80 17 chr6 38592276 38592751 -150686803 + MLT1J LTR MaLR 1 505 -6 258 306 126 9 chr6 38594385 38594496 -150685058 - L2 LINE L2 0 3272 3149 1997 161 7 0 chr6 38594882 38595192 -150684362 + AluJb SINE Alu 1 312 0 755 246 77 0 chr6 38595291 38595498 -150684056 + MLT1J LTR MaLR 1 223 -288 2195 133 0 0 chr6 38595533 38595833 -150683721 + AluSx SINE Alu 1 300 -12 2002 136 44 33 chr6 38595849 38596209 -150683345 - THE1B LTR MaLR 0 364 1 8432 88 33 35 chr6 38596209 38597262 -150682292 - THE1B-int LTR MaLR 0 1580 526 1202 111 49 0 chr6 38597262 38597389 -150682165 + AluJb SINE Alu 1 135 -177 2289 110 3 13 chr6 38597389 38597698 -150681856 + AluSx SINE Alu 1 306 -6 8432 88 33 35 chr6 38597424 38598191 -150681363 - THE1B-int LTR MaLR -1054 526 1 2211 133 33 41 chr6 38598191 38598558 -150680996 - THE1B LTR MaLR 0 364 1 1465 193 4 23 chr6 38598561 38598825 -150680729 + AluJo SINE Alu 24 282 -30 2237 123 7 0 chr6 38599662 38599963 -150679591 - AluSg SINE Alu -7 303 1 1655 122 110 115 chr6 38600070 38600232 -150679322 + MSTA LTR MaLR 22 183 -245 2312 98 13 0 chr6 38600232 38600539 -150679015 + AluSp SINE Alu 1 311 -2 1655 122 110 115 chr6 38600539 38600785 -150678769 + MSTA LTR MaLR 183 428 0 969 111 4 183 chr6 38601176 38601411 -150678143 + 7SK RNA RNA 1 193 0 2656 152 21 2 chr6 38602079 38602499 -150677055 - MSTA LTR MaLR 0 428 1 1576 195 34 0 chr6 38602642 38602940 -150676614 + AluJo SINE Alu 1 308 -4 4948 119 48 5 chr6 38603075 38603881 -150675673 - Tigger1 DNA MER2_type -1 2417 1577 2482 100 0 0 chr6 38603899 38604209 -150675345 - AluSq SINE Alu -3 310 1 1087 91 0 0 chr6 38604211 38604343 -150675211 - AluSq/x SINE Alu -180 132 1 5102 98 1 12 chr6 38604343 38605095 -150674459 - Tigger1 DNA MER2_type -829 1589 846 237 108 0 0 chr6 38605180 38605217 -150674337 + (TG)n Simple_repeat Simple_repeat 2 38 0 413 115 0 39 chr6 38605228 38605306 -150674248 + MLT1F LTR MaLR 468 542 0 4431 169 56 67 chr6 38605731 38606813 -150672741 + MER11C LTR ERVK 1 1071 0 1028 257 55 23 chr6 38606911 38606931 -150672623 - MLT1I LTR MaLR 0 409 391 2344 100 0 3 chr6 38606931 38607230 -150672324 + AluSc SINE Alu 1 298 -11 1028 257 55 23 chr6 38607230 38607258 -150672296 - MLT1I LTR MaLR -18 391 365 2121 145 0 0 chr6 38607258 38607555 -150671999 - AluSx SINE Alu -15 297 1 1028 257 55 23 chr6 38607555 38607848 -150671706 - MLT1I LTR MaLR -44 365 56 313 180 22 11 chr6 38607848 38607937 -150671617 - L1MDa LINE L1 -4456 2084 1995 757 193 0 0 chr6 38607937 38608056 -150671498 + AluJb SINE Alu 2 120 -192 189 107 0 0 chr6 38608058 38608086 -150671468 + (CA)n Simple_repeat Simple_repeat 1 28 0 629 0 26 0 chr6 38608088 38608164 -150671390 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 5399 197 70 40 chr6 38608165 38609123 -150670431 - L1MDa LINE L1 -4537 2003 1075 1791 181 3 10 chr6 38609123 38609415 -150670139 - AluJb SINE Alu -22 290 1 5399 197 70 40 chr6 38609415 38609476 -150670078 - L1MDa LINE L1 -5465 1075 1017 378 0 0 0 chr6 38609476 38609518 -150670036 + (TG)n Simple_repeat Simple_repeat 2 43 0 5399 197 70 40 chr6 38609518 38609883 -150669671 - L1MDa LINE L1 -5523 1017 576 1667 148 42 61 chr6 38609915 38610292 -150669262 + LTR8A LTR ERV1 358 727 0 615 246 59 27 chr6 38610294 38610481 -150669073 + LTR16C LTR ERVL 299 491 0 1522 192 21 21 chr6 38610531 38610851 -150668703 - AluJb SINE Alu 0 312 9 3686 99 8 15 chr6 38610851 38611150 -150668404 + MER41A LTR ERV1 25 321 -233 2149 114 0 14 chr6 38611150 38611470 -150668084 + AluSq SINE Alu 1 316 0 3686 99 8 15 chr6 38611470 38611703 -150667851 + MER41A LTR ERV1 321 554 0 2305 81 0 3 chr6 38611734 38612031 -150667523 - AluY SINE Alu -15 296 1 3227 134 81 29 chr6 38612177 38612759 -150666795 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chr6 38612934 38612958 -150666596 + AT_rich Low_complexity Low_complexity 1 24 0 238 237 21 93 chr6 38613442 38613539 -150666015 + MIR SINE MIR 36 125 -83 1700 196 82 54 chr6 38613619 38614048 -150665506 - LTR47B LTR ERVL -2 441 1 380 246 138 7 chr6 38614326 38614464 -150665090 - L1MC4a LINE L1 -1925 5883 5728 189 0 0 0 chr6 38614464 38614485 -150665069 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 675 152 62 18 chr6 38614498 38614610 -150664944 - AluJb SINE Alu -194 118 2 1001 263 53 19 chr6 38614611 38614934 -150664620 - L1MC4a LINE L1 -2072 5736 5403 198 0 0 0 chr6 38614935 38614957 -150664597 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 319 256 126 51 chr6 38614957 38614972 -150664582 - L1MC4a LINE L1 -983 5163 5151 1552 112 0 0 chr6 38614972 38615169 -150664385 - AluSg SINE Alu -113 197 1 319 256 126 51 chr6 38615169 38615368 -150664186 - L1MC4a LINE L1 -995 5151 4933 2190 116 13 0 chr6 38615758 38616061 -150663493 - AluSx SINE Alu -5 307 1 196 294 181 1 chr6 38616301 38616485 -150663069 - MIR SINE MIR -28 234 8 211 305 76 34 chr6 38616628 38616746 -150662808 + L2 LINE L2 3150 3272 0 2192 109 17 3 chr6 38616934 38617236 -150662318 + AluSx SINE Alu 5 310 -2 334 344 0 0 chr6 38617245 38617335 -150662219 + L1MC4 LINE L1 6614 6703 -1339 2131 132 0 16 chr6 38617693 38618003 -150661551 + AluSq SINE Alu 1 305 -8 2393 97 0 6 chr6 38618003 38618313 -150661241 + AluSc SINE Alu 1 309 0 2232 101 0 11 chr6 38618330 38618643 -150660911 + AluSx SINE Alu 1 310 0 4211 150 85 80 chr6 38619152 38620078 -150659476 - MER21A LTR ERV1 0 931 1 2076 121 10 3 chr6 38620180 38620469 -150659085 - AluSx SINE Alu -21 291 1 1549 149 72 57 chr6 38620601 38620734 -150658820 - MER39 LTR ERV1 -16 691 561 2257 128 0 6 chr6 38620734 38621046 -150658508 + AluSx SINE Alu 1 310 -2 1549 149 72 57 chr6 38621046 38621261 -150658293 - MER39 LTR ERV1 -146 561 338 1382 153 5 5 chr6 38621261 38621484 -150658070 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 38621485 38621584 -150657970 - LTR30 LTR ERV1 -80 642 544 4036 156 46 49 chr6 38621585 38622549 -150657005 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 38622549 38622865 -150656689 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 38622903 38623208 -150656346 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 38623474 38623780 -150655774 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 38623791 38623833 -150655721 + Charlie8 DNA MER1_type 98 140 -2277 968 208 56 5 chr6 38623842 38624039 -150655515 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 38624499 38624797 -150654757 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 38625247 38625769 -150653785 + MER74A LTR ERVL 4 545 -13 1867 155 3 30 chr6 38625851 38626176 -150653378 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 38626190 38626467 -150653087 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 38626504 38626670 -150652884 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 38626703 38626900 -150652654 - MLT1J LTR MaLR -215 296 113 2387 78 14 0 chr6 38627057 38627351 -150652203 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 38627392 38627700 -150651854 - AluSx SINE Alu -4 308 3 263 28 28 0 chr6 38627945 38627981 -150651573 + (TG)n Simple_repeat Simple_repeat 1 37 0 1072 187 10 30 chr6 38628159 38628357 -150651197 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 38628357 38628654 -150650900 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 38629137 38629372 -150650182 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 38629390 38629693 -150649861 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 38629693 38629760 -150649794 - AluSc SINE Alu -7 292 226 7159 121 128 97 chr6 38629763 38631408 -150648146 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 38631408 38631638 -150647916 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 38631833 38631888 -150647666 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 38632156 38632401 -150647153 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 38632649 38632941 -150646613 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 38633606 38633906 -150645648 - AluSc SINE Alu -9 300 1 279 328 189 22 chr6 38634331 38634760 -150644794 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 38634760 38635184 -150644370 + LTR16A LTR ERVL 2 450 0 279 328 189 22 chr6 38635184 38635242 -150644312 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 38635250 38635332 -150644222 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 38635441 38635613 -150643941 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 38635613 38635912 -150643642 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 38635912 38636039 -150643515 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 38636040 38636238 -150643316 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 38637335 38637422 -150642132 - L2 LINE L2 0 3272 3160 2417 98 0 0 chr6 38637593 38637898 -150641656 + AluSg SINE Alu 1 305 -5 456 123 0 0 chr6 38637930 38638003 -150641551 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 38638005 38638071 -150641483 - Alu SINE Alu -1 301 236 1902 172 3 3 chr6 38638353 38638655 -150640899 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 38638728 38638776 -150640778 + MER57A LTR ERV1 292 339 -64 1308 120 0 0 chr6 38638783 38638966 -150640588 + AluSg/x SINE Alu 121 303 -9 216 245 0 75 chr6 38639149 38639202 -150640352 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 38639282 38639375 -150640179 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 38639742 38640026 -150639528 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 38640354 38640526 -150639028 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 38640601 38640918 -150638636 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 38641055 38641184 -150638370 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 38644159 38644226 -150635328 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 38644236 38644448 -150635106 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 38645597 38645762 -150633792 + FRAM SINE Alu 1 165 -1 1522 251 53 2 chr6 38646299 38646717 -150632837 + L1ME3A LINE L1 5724 6162 -8 1810 92 113 35 chr6 38646739 38647021 -150632533 + AluSx SINE Alu 1 304 -8 1396 199 138 39 chr6 38647174 38647616 -150631938 + MLT2B1 LTR ERVL 5 490 -30 237 60 20 40 chr6 38647629 38647679 -150631875 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2157 151 0 0 chr6 38647684 38647996 -150631558 - AluJo SINE Alu 0 312 1 1017 216 124 105 chr6 38648298 38648515 -150631039 + MLT1H1 LTR MaLR 5 217 -338 2480 88 0 3 chr6 38648515 38648820 -150630734 + AluSg SINE Alu 1 304 -6 1017 216 124 105 chr6 38648820 38648832 -150630722 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 38648832 38649101 -150630453 + AluJo SINE Alu 1 279 -33 1017 216 124 105 chr6 38649101 38649411 -150630143 + MLT1H1 LTR MaLR 227 555 0 203 268 0 0 chr6 38650099 38650140 -150629414 + MIR SINE MIR 21 61 -201 2275 126 0 0 chr6 38650143 38650453 -150629101 - AluSg SINE Alu 0 310 1 1618 193 0 39 chr6 38650453 38650757 -150628797 - AluJo SINE Alu -18 294 3 282 321 158 12 chr6 38650762 38650927 -150628627 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 38651444 38651469 -150628085 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 981 199 24 15 chr6 38651495 38651526 -150628028 - MER3 DNA MER1_type 0 209 180 2254 115 0 7 chr6 38651526 38651695 -150627859 - AluSx SINE Alu -10 302 134 2392 74 0 7 chr6 38651695 38652012 -150627542 - AluY SINE Alu 0 311 2 2254 115 0 7 chr6 38652012 38652146 -150627408 - AluSx SINE Alu -178 134 1 981 199 24 15 chr6 38652146 38652320 -150627234 - MER3 DNA MER1_type -29 180 2 457 144 0 56 chr6 38653241 38653331 -150626223 - AluJ/FRAM SINE Alu -8 304 220 1430 175 20 4 chr6 38653588 38653834 -150625720 - AluJo SINE Alu -62 250 1 2429 79 7 0 chr6 38654264 38654568 -150624986 - AluSp SINE Alu -7 306 1 288 276 31 24 chr6 38654626 38654753 -150624801 - LTR67 LTR ERVL -17 540 413 289 299 41 10 chr6 38655199 38655296 -150624258 + MIR SINE MIR 156 255 -7 456 251 37 55 chr6 38655321 38655428 -150624126 - MER63A DNA MER1_type -1478 210 103 2779 163 124 67 chr6 38655428 38655528 -150624026 - MER39 LTR ERV1 0 707 614 1732 189 33 0 chr6 38655528 38655829 -150623725 - AluJb SINE Alu -1 311 1 2779 163 124 67 chr6 38655829 38655946 -150623608 - MER39 LTR ERV1 -93 614 505 2363 116 0 0 chr6 38655946 38656249 -150623305 + AluSx SINE Alu 1 303 -9 2779 163 124 67 chr6 38656249 38656281 -150623273 - MER39 LTR ERV1 -202 505 476 2553 77 3 0 chr6 38656281 38656591 -150622963 + AluSp SINE Alu 1 311 -2 2779 163 124 67 chr6 38656591 38657008 -150622546 - MER39 LTR ERV1 -231 476 1 456 251 37 55 chr6 38657008 38657063 -150622491 - MER63A DNA MER1_type -1585 103 51 648 317 147 18 chr6 38657162 38657544 -150622010 - MLT1J LTR MaLR -6 505 75 241 319 66 56 chr6 38657708 38657962 -150621592 - L2 LINE L2 -470 2844 2585 8627 64 5 7 chr6 38657962 38659036 -150620518 - MER11C LTR ERVK 0 1071 1 241 319 66 56 chr6 38659036 38659069 -150620485 - L2 LINE L2 -729 2585 2554 2281 123 0 0 chr6 38659199 38659507 -150620047 - AluSq SINE Alu -5 308 1 1681 166 0 56 chr6 38659509 38659829 -150619725 - AluJo SINE Alu -9 303 2 1035 229 117 40 chr6 38659835 38660237 -150619317 - LTR16A1 LTR ERVL 0 457 25 213 316 19 52 chr6 38660258 38660413 -150619141 - L2 LINE L2 -954 2360 2211 1666 175 4 18 chr6 38660419 38660753 -150618801 - AluJb SINE Alu 0 336 7 940 231 154 21 chr6 38660985 38661297 -150618257 - MLT1G LTR MaLR 0 590 321 1793 149 23 46 chr6 38661297 38661599 -150617955 - AluJb SINE Alu -17 295 1 940 231 154 21 chr6 38661599 38661786 -150617768 - MLT1G LTR MaLR -269 321 1 213 272 39 0 chr6 38662024 38662095 -150617459 - MIR SINE MIR -107 155 82 386 250 47 0 chr6 38663332 38663460 -150616094 - L1ME4a LINE L1 -11 6110 5977 243 306 118 63 chr6 38663472 38663819 -150615735 + L2 LINE L2 2909 3274 -39 375 303 76 0 chr6 38663895 38664014 -150615540 - L2 LINE L2 -8 3264 3137 579 284 60 22 chr6 38664146 38664329 -150615225 - MIR3 SINE MIR -3 205 16 479 315 62 45 chr6 38664331 38664659 -150614895 + L2 LINE L2 2449 2770 -544 1522 167 20 106 chr6 38664659 38664807 -150614747 - MLT1A2 LTR MaLR 0 374 215 1831 106 94 4 chr6 38664807 38665111 -150614443 - AluSc SINE Alu 0 309 1 2376 99 3 13 chr6 38665113 38665425 -150614129 - AluSx SINE Alu -3 309 1 1522 167 20 106 chr6 38665425 38665680 -150613874 - MLT1A2 LTR MaLR -160 214 3 479 315 62 45 chr6 38665680 38665751 -150613803 + L2 LINE L2 2770 2855 -459 439 315 50 50 chr6 38665862 38666103 -150613451 + L2 LINE L2 3007 3247 -25 2442 98 0 0 chr6 38666725 38667022 -150612532 + AluSq SINE Alu 1 297 -16 300 164 79 145 chr6 38667022 38667174 -150612380 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 38667195 38667218 -150612336 + AT_rich Low_complexity Low_complexity 1 23 0 1951 170 20 0 chr6 38667226 38667532 -150612022 + AluJb SINE Alu 1 312 0 1007 216 22 86 chr6 38667563 38667924 -150611630 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 38667924 38667950 -150611604 + AT_rich Low_complexity Low_complexity 1 26 0 583 122 0 0 chr6 38668914 38668996 -150610558 + AluS SINE Alu 5 86 -227 452 148 0 0 chr6 38668997 38669069 -150610485 - AluS SINE Alu -236 66 1 2404 60 0 10 chr6 38669320 38669621 -150609933 - AluY SINE Alu -13 298 1 2236 113 3 3 chr6 38669621 38669922 -150609632 - AluSx SINE Alu -11 301 1 379 359 30 0 chr6 38669954 38670085 -150609469 + MIR SINE MIR 20 154 -108 1172 227 65 36 chr6 38670193 38670501 -150609053 + MLT1I LTR MaLR 93 409 0 1851 167 3 7 chr6 38670631 38670924 -150608630 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 38670992 38671112 -150608442 + A-rich Low_complexity Low_complexity 2 119 0 2123 137 0 0 chr6 38671123 38671466 -150608088 + AluSx SINE Alu 1 343 0 416 299 131 53 chr6 38671682 38672215 -150607339 - L2 LINE L2 -20 3252 2674 507 149 6 119 chr6 38672342 38672399 -150607155 - MER83 LTR ERV1 0 448 386 2391 88 0 16 chr6 38672399 38672704 -150606850 + AluSx SINE Alu 1 300 -12 507 149 6 119 chr6 38672704 38672872 -150606682 - MER83 LTR ERV1 -62 386 114 6570 154 23 16 chr6 38672874 38673994 -150605560 - MER83-int LTR ERV1 -3741 1139 12 1604 175 73 80 chr6 38673994 38674445 -150605109 - MER83 LTR ERV1 0 448 1 374 257 59 103 chr6 38674446 38674544 -150605010 - MIR SINE MIR -19 243 142 2321 103 0 0 chr6 38674544 38674836 -150604718 - AluSc SINE Alu -17 292 1 374 257 59 103 chr6 38674836 38674990 -150604564 - MIR SINE MIR -120 142 2 218 303 98 32 chr6 38675073 38675265 -150604289 - MIR SINE MIR -56 206 1 197 234 16 47 chr6 38676123 38676187 -150603367 - MIR SINE MIR -64 198 137 2176 136 42 112 chr6 38676190 38676427 -150603127 - L1MB3 LINE L1 -7 6176 5924 1676 115 0 0 chr6 38676427 38676653 -150602901 - AluSc SINE Alu 0 309 84 2176 136 42 112 chr6 38676653 38676680 -150602874 - L1MB3 LINE L1 -259 5924 5897 1922 134 51 0 chr6 38676680 38676955 -150602599 + AluSx SINE Alu 1 289 -23 2137 99 39 0 chr6 38676963 38677247 -150602307 + AluSx SINE Alu 1 295 -17 2176 136 42 112 chr6 38677247 38677284 -150602270 - L1MB3 LINE L1 -288 5895 4790 2321 99 0 3 chr6 38677284 38677577 -150601977 - AluSp SINE Alu -18 295 4 469 243 62 82 chr6 38677582 38677697 -150601857 - L1MC4 LINE L1 -2151 5891 5775 1928 160 0 20 chr6 38677697 38678003 -150601551 - AluJb SINE Alu -12 300 1 469 243 62 82 chr6 38678003 38678130 -150601424 - L1MC4 LINE L1 -2267 5775 5654 233 146 0 0 chr6 38678101 38678149 -150601405 - L1MB7 LINE L1 -7 6177 6130 * 537 106 0 75 chr6 38678153 38678247 -150601307 + AluSg/x SINE Alu 207 293 -16 4148 141 70 43 chr6 38678247 38678278 -150601276 - L1MB7 LINE L1 -47 6137 6108 2160 108 10 0 chr6 38678278 38678574 -150600980 - AluSg SINE Alu -10 300 2 4148 141 70 43 chr6 38678574 38679247 -150600307 - L1MB7 LINE L1 -76 6108 5455 2166 94 49 3 chr6 38679247 38679533 -150600021 - AluSx SINE Alu -13 299 1 4148 141 70 43 chr6 38679533 38679755 -150599799 - L1MB7 LINE L1 -729 5455 5240 889 133 0 15 chr6 38679755 38679890 -150599664 - FLAM_C SINE Alu 0 133 1 4148 141 70 43 chr6 38679890 38680165 -150599389 - L1MB7 LINE L1 -944 5240 4912 840 126 0 0 chr6 38680218 38680337 -150599217 + FLAM_C SINE Alu 1 119 -24 195 42 0 0 chr6 38680341 38680365 -150599189 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 308 297 0 50 chr6 38680366 38680467 -150599087 + L2 LINE L2 3176 3271 -1 265 244 47 12 chr6 38680466 38680552 -150599002 - MIR SINE MIR -126 136 48 * 2393 79 17 0 chr6 38680566 38680857 -150598697 - AluSc SINE Alu -13 296 1 2209 85 17 0 chr6 38680960 38681305 -150598249 + AluSq SINE Alu 1 313 0 251 260 328 11 chr6 38681997 38682174 -150597380 - MIR SINE MIR -10 252 20 477 201 85 39 chr6 38682313 38682516 -150597038 - MER63 DNA MER1_type 0 1060 1 2206 108 34 0 chr6 38682518 38682814 -150596740 - AluSx SINE Alu -6 306 1 662 171 70 23 chr6 38683284 38683413 -150596141 - AluJo SINE Alu -93 219 85 1904 164 17 0 chr6 38683546 38683838 -150595716 + AluJb SINE Alu 1 297 -15 479 346 23 68 chr6 38684802 38684933 -150594621 - L2 LINE L2 0 3272 3157 2398 82 0 10 chr6 38684933 38685239 -150594315 - AluSq SINE Alu -10 303 1 479 346 23 68 chr6 38685239 38685373 -150594181 - L2 LINE L2 -115 3157 3019 199 276 103 0 chr6 38685406 38685464 -150594090 + L2 LINE L2 3160 3223 -49 339 314 0 0 chr6 38685685 38685771 -150593783 + MIR SINE MIR 44 129 -133 2483 67 0 0 chr6 38685876 38686175 -150593379 - AluY SINE Alu -12 299 1 2350 88 0 0 chr6 38686482 38686791 -150592763 - AluSg SINE Alu 0 309 1 1941 161 0 13 chr6 38686799 38687098 -150592456 - AluJb SINE Alu -17 295 1 2263 84 61 3 chr6 38687598 38687894 -150591660 - AluSq SINE Alu 0 313 1 1202 202 116 27 chr6 38688440 38688698 -150590856 + AluJb SINE Alu 12 292 -20 2024 136 0 7 chr6 38689056 38689350 -150590204 - AluSx SINE Alu -16 296 5 595 233 31 25 chr6 38689437 38689596 -150589958 - MIR SINE MIR 0 262 103 266 271 124 98 chr6 38689653 38689935 -150589619 + L2 LINE L2 2707 3019 -253 2197 89 41 0 chr6 38689935 38690227 -150589327 - AluSx SINE Alu -8 304 1 266 271 124 98 chr6 38690227 38690270 -150589284 + L2 LINE L2 3019 3059 -213 213 337 67 11 chr6 38690440 38690529 -150589025 - L2 LINE L2 -17 3296 3203 2461 81 0 31 chr6 38691704 38692027 -150587527 - AluSp SINE Alu 0 313 1 2420 68 3 0 chr6 38692034 38692327 -150587227 - AluSp SINE Alu -19 294 1 265 339 97 16 chr6 38692439 38692563 -150586991 - MIR3 SINE MIR -66 142 9 1113 61 0 0 chr6 38692679 38692810 -150586744 + AluY SINE Alu 2 132 -179 214 308 123 23 chr6 38692898 38693028 -150586526 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 38695123 38695170 -150584384 + GC_rich Low_complexity Low_complexity 1 47 0 1305 145 7 86 chr6 38695600 38695869 -150583685 + AluJo SINE Alu 40 287 -25 2452 78 3 0 chr6 38695877 38696185 -150583369 + AluSc SINE Alu 1 309 0 398 198 0 55 chr6 38698203 38698294 -150581260 + L2 LINE L2 3225 3310 -3 924 142 231 4 chr6 38699251 38699476 -150580078 - MER2 DNA MER2_type -36 309 34 415 244 49 0 chr6 38699567 38699649 -150579905 - AluJb SINE Alu -79 233 148 306 216 68 45 chr6 38699764 38699852 -150579702 + MER5A DNA MER1_type 18 107 -82 1200 136 39 152 chr6 38699970 38700266 -150579288 + AluJb SINE Alu 3 260 -52 2111 121 13 10 chr6 38700266 38700571 -150578983 - AluSx SINE Alu -6 306 1 1200 136 39 152 chr6 38700571 38700604 -150578950 + AluJb SINE Alu 260 295 -17 950 209 0 0 chr6 38700942 38701100 -150578454 - FRAM SINE Alu -16 160 3 2155 125 7 13 chr6 38701113 38701417 -150578137 - AluSx SINE Alu -10 302 1 2280 125 3 0 chr6 38702178 38702482 -150577072 - AluSx SINE Alu -7 305 1 2358 88 10 0 chr6 38702492 38702789 -150576765 - AluY SINE Alu -9 302 3 2268 113 0 13 chr6 38702791 38703092 -150576462 - AluSx SINE Alu -15 297 1 773 252 67 21 chr6 38703102 38703340 -150576214 - MIR SINE MIR -10 252 4 258 330 177 5 chr6 38703426 38703635 -150575919 + MIR SINE MIR 7 251 -11 2325 99 3 3 chr6 38704916 38705220 -150574334 + AluSx SINE Alu 1 304 -8 2157 121 13 10 chr6 38705684 38705982 -150573572 - AluSx SINE Alu -13 299 1 1819 161 24 3 chr6 38706073 38706365 -150573189 - AluJb SINE Alu -14 298 1 967 279 73 31 chr6 38706595 38706746 -150572808 - HAL1 LINE L1 -716 1791 1648 2170 142 0 0 chr6 38706746 38707049 -150572505 - AluSq SINE Alu -10 303 1 967 279 73 31 chr6 38707049 38707172 -150572382 - HAL1 LINE L1 -859 1648 1532 2264 124 3 0 chr6 38707172 38707478 -150572076 + AluSq SINE Alu 1 307 -6 1904 172 23 3 chr6 38707482 38707785 -150571769 + AluJb SINE Alu 1 309 -3 967 279 73 31 chr6 38707785 38707955 -150571599 - HAL1 LINE L1 -977 1530 1322 2283 98 3 0 chr6 38708022 38708319 -150571235 - AluY SINE Alu -13 298 1 1474 99 42 0 chr6 38708460 38708652 -150570902 - AluSg/x SINE Alu -40 272 73 883 285 166 45 chr6 38708658 38708885 -150570669 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 38708885 38708905 -150570649 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 883 285 166 45 chr6 38708905 38709045 -150570509 - HAL1 LINE L1 -1867 640 518 1816 137 3 81 chr6 38709045 38709380 -150570174 + AluSx SINE Alu 4 312 0 883 285 166 45 chr6 38709380 38709661 -150569893 - HAL1 LINE L1 -1989 518 110 1928 182 0 3 chr6 38709681 38709994 -150569560 + AluJb SINE Alu 1 312 0 811 73 18 0 chr6 38710017 38710127 -150569427 - HY1 scRNA scRNA 0 112 1 547 16 0 0 chr6 38710156 38710220 -150569334 + AluY SINE Alu 231 294 -16 291 250 0 0 chr6 38710230 38710290 -150569264 - HAL1 LINE L1 -2438 69 10 2578 64 0 0 chr6 38710308 38710605 -150568949 - AluY SINE Alu -14 297 1 422 290 184 37 chr6 38710608 38710880 -150568674 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 38710894 38710920 -150568634 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 492 62 0 0 chr6 38710922 38710986 -150568568 + (TCCG)n Simple_repeat Simple_repeat 2 65 0 1878 127 33 11 chr6 38710999 38711274 -150568280 - AluSx SINE Alu -31 281 1 772 333 44 18 chr6 38711307 38711649 -150567905 + L2 LINE L2 2959 3309 -4 191 250 19 19 chr6 38711656 38711708 -150567846 + L2 LINE L2 3205 3256 -16 217 368 21 0 chr6 38711712 38711807 -150567747 - MIR3 SINE MIR -41 167 71 461 204 154 86 chr6 38711833 38711995 -150567559 - MER5A DNA MER1_type -8 181 9 3075 188 64 14 chr6 38712154 38712775 -150566779 + MER82 DNA MER2_type 1 652 -1 656 301 68 0 chr6 38712872 38713035 -150566519 - MER91A DNA MER1_type 0 196 23 2397 112 0 0 chr6 38713079 38713384 -150566170 - AluSg SINE Alu -5 305 1 1780 160 17 0 chr6 38713384 38713678 -150565876 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 38714551 38714573 -150564981 + (T)n Simple_repeat Simple_repeat 1 22 0 1793 109 0 0 chr6 38714573 38714803 -150564751 - AluSq SINE Alu -83 230 1 590 183 1 7 chr6 38718541 38718555 -150560999 - L1PA16 LINE L1 -134 6022 6009 1908 85 0 12 chr6 38718555 38718803 -150560751 - AluSc SINE Alu -10 299 55 590 183 1 7 chr6 38718803 38718913 -150560641 - L1PA16 LINE L1 -147 6009 5903 475 81 0 0 chr6 38718913 38718975 -150560579 - AluSc SINE Alu -246 63 2 2342 132 3 0 chr6 38719179 38719534 -150560020 + L1PA16 LINE L1 5799 6154 -12 657 160 104 0 chr6 38719582 38719688 -150559866 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 38719688 38719711 -150559843 + (CAA)n Simple_repeat Simple_repeat 2 24 0 266 68 23 0 chr6 38719711 38719755 -150559799 + L1M1 LINE L1 5788 5832 -468 1672 141 30 8 chr6 38720095 38720258 -150559296 - AluJb SINE Alu -14 298 125 495 0 0 0 chr6 38720258 38720313 -150559241 + (TA)n Simple_repeat Simple_repeat 1 55 0 1672 141 30 8 chr6 38720313 38720411 -150559143 - AluJb SINE Alu -187 125 31 233 196 0 0 chr6 38720616 38720662 -150558892 + CT-rich Low_complexity Low_complexity 2 47 0 2425 112 0 0 chr6 38720718 38721030 -150558524 + AluSx SINE Alu 1 312 0 295 352 86 43 chr6 38721074 38721330 -150558224 - L2 LINE L2 -179 3093 2827 223 284 25 37 chr6 38721779 38721860 -150557694 + L2 LINE L2 3186 3265 -7 471 246 57 75 chr6 38723072 38723300 -150556254 + L2 LINE L2 3082 3305 -8 398 286 143 2 chr6 38723832 38724014 -150555540 + MIR SINE MIR 36 241 -21 1969 147 0 3 chr6 38724280 38724597 -150554957 - AluJo SINE Alu 0 316 1 21 0 0 0 chr6 38724597 38724618 -150554936 + AT_rich Low_complexity Low_complexity 1 21 0 2385 88 0 3 chr6 38724622 38724916 -150554638 + AluSg SINE Alu 1 293 -17 1981 80 53 8 chr6 38724916 38725177 -150554377 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 38725467 38725501 -150554053 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 388 252 19 19 chr6 38725607 38725710 -150553844 + L2 LINE L2 3171 3273 -40 216 324 15 0 chr6 38725948 38726016 -150553538 + MIR3 SINE MIR 132 200 -8 2424 75 10 0 chr6 38727425 38727719 -150551835 + AluSq SINE Alu 1 297 -16 283 283 6 31 chr6 38727835 38727856 -150551698 - L1MA10 LINE L1 0 6334 6314 2231 216 39 21 chr6 38727856 38728101 -150551453 - L1ME1 LINE L1 -8 6158 5919 2324 100 27 0 chr6 38728101 38728402 -150551152 + AluSq SINE Alu 1 309 -4 2231 216 39 21 chr6 38728402 38728725 -150550829 - L1ME1 LINE L1 -247 5919 5580 1165 112 7 0 chr6 38728764 38728916 -150550638 - AluSx SINE Alu -159 153 1 1487 173 12 4 chr6 38728919 38729167 -150550387 + AluJb SINE Alu 50 299 -13 2283 90 30 7 chr6 38729168 38729467 -150550087 + AluSg SINE Alu 1 306 -4 2232 75 3 14 chr6 38729881 38730187 -150549367 - AluY SINE Alu 0 304 2 487 307 58 54 chr6 38730187 38730380 -150549174 - MIR SINE MIR -36 226 29 203 268 0 0 chr6 38730400 38730441 -150549113 + MIR SINE MIR 21 61 -201 2275 126 0 0 chr6 38730444 38730754 -150548800 - AluSg SINE Alu 0 310 1 1618 193 0 39 chr6 38730754 38731058 -150548496 - AluJo SINE Alu -17 295 3 282 321 158 12 chr6 38731063 38731228 -150548326 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 38731745 38731770 -150547784 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 728 207 36 31 chr6 38731796 38731827 -150547727 - MER3 DNA MER1_type 0 209 180 2254 115 0 7 chr6 38731827 38731996 -150547558 - AluSx SINE Alu -10 302 134 2392 74 0 7 chr6 38731996 38732313 -150547241 - AluY SINE Alu 0 311 2 2254 115 0 7 chr6 38732313 38732447 -150547107 - AluSx SINE Alu -178 134 1 728 207 36 31 chr6 38732447 38732608 -150546946 - MER3 DNA MER1_type -29 180 16 1800 154 25 44 chr6 38733329 38733647 -150545907 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 38736361 38736382 -150543172 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 38736994 38737029 -150542525 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 38737532 38737552 -150542002 + (A)n Simple_repeat Simple_repeat 1 20 0 336 91 45 76 chr6 38740555 38740621 -150538933 - U6 snRNA snRNA -43 64 1 2412 94 0 0 chr6 38741220 38741518 -150538036 - AluSc SINE Alu -11 298 1 2472 71 0 0 chr6 38742338 38742665 -150536889 + AluY SINE Alu 1 311 0 2308 106 0 0 chr6 38742878 38743170 -150536384 - AluSg SINE Alu -18 292 1 2304 99 13 0 chr6 38743422 38743724 -150535830 + AluSq SINE Alu 1 306 -7 212 358 50 17 chr6 38743771 38743891 -150535663 + L3 LINE CR1 1432 1555 -22 2236 113 0 10 chr6 38743964 38744264 -150535290 + AluSx SINE Alu 1 297 -15 2320 104 0 7 chr6 38744585 38744893 -150534661 + AluSg1 SINE Alu 3 308 -1 1656 133 118 11 chr6 38745389 38745668 -150533886 + AluSg1 SINE Alu 1 309 0 767 228 0 0 chr6 38745893 38746042 -150533512 + MER58B DNA MER1_type 193 341 0 2118 114 52 0 chr6 38746073 38746362 -150533192 - AluSp SINE Alu -8 305 2 1979 125 0 28 chr6 38746410 38746698 -150532856 - AluSx SINE Alu -32 280 1 586 305 0 61 chr6 38747515 38747712 -150531842 - MER91A DNA MER1_type -11 185 1 2009 137 17 3 chr6 38748121 38748414 -150531140 + AluJb SINE Alu 1 297 -15 2211 131 0 0 chr6 38750908 38751205 -150528349 - AluSg SINE Alu -13 297 1 1925 153 10 0 chr6 38751205 38751499 -150528055 - AluJo SINE Alu -13 299 3 2111 140 0 3 chr6 38751541 38751841 -150527713 - AluSx SINE Alu -7 305 7 2475 62 7 0 chr6 38751858 38752146 -150527408 - AluY SINE Alu -21 290 1 393 203 137 140 chr6 38752348 38752422 -150527132 - L2 LINE L2 -3 3310 3237 1532 131 0 18 chr6 38752422 38752651 -150526903 + AluJb SINE Alu 86 310 -2 2285 112 0 3 chr6 38752661 38752957 -150526597 + AluSx SINE Alu 6 300 -12 2124 142 0 3 chr6 38752958 38753269 -150526285 + AluSx SINE Alu 1 310 -2 393 203 137 140 chr6 38753269 38753496 -150526058 - L2 LINE L2 -84 3229 2997 2370 54 40 14 chr6 38753504 38753801 -150525753 + AluY SINE Alu 1 305 -6 1215 104 11 22 chr6 38753801 38753975 -150525579 + AluSg/x SINE Alu 135 308 -4 945 180 0 12 chr6 38753982 38754143 -150525411 + FRAM SINE Alu 10 168 -8 323 164 0 15 chr6 38755515 38755582 -150523972 + GA-rich Low_complexity Low_complexity 5 70 0 1772 166 19 35 chr6 38755729 38756043 -150523511 + AluJb SINE Alu 4 312 0 271 136 91 0 chr6 38756087 38756162 -150523392 + Alu SINE Alu 235 313 0 1522 165 81 4 chr6 38756210 38756471 -150523083 - AluJo SINE Alu -31 281 1 435 51 0 0 chr6 38756472 38756531 -150523023 - L1MA7 LINE L1 -461 5830 5772 2928 132 27 0 chr6 38756531 38757048 -150522506 - L1MA4 LINE L1 -1 6299 5769 988 198 18 0 chr6 38757048 38757215 -150522339 - AluSg/x SINE Alu -24 286 117 2263 125 0 0 chr6 38757240 38757543 -150522011 - AluSx SINE Alu -9 303 1 2328 115 3 0 chr6 38757547 38757851 -150521703 - AluSp SINE Alu -8 305 1 548 105 29 0 chr6 38757856 38757965 -150521589 - L1ME LINE L1 -381 5781 5669 589 237 8 0 chr6 38758001 38758132 -150521422 - AluJo SINE Alu -103 209 78 309 250 16 0 chr6 38758132 38758196 -150521358 + MER2 DNA MER2_type 281 345 0 1753 140 23 8 chr6 38758247 38758511 -150521043 + AluSx SINE Alu 1 268 -44 217 352 56 24 chr6 38760561 38760686 -150518868 + L2 LINE L2 3144 3272 0 736 142 8 0 chr6 38761520 38761647 -150517907 - L1MB3 LINE L1 -1 6182 6055 1855 179 3 16 chr6 38761658 38761970 -150517584 - AluJo SINE Alu -4 308 1 2036 136 0 7 chr6 38762495 38762789 -150516765 - AluSx SINE Alu -16 296 5 560 233 31 25 chr6 38762876 38763035 -150516519 - MIR SINE MIR 0 262 103 225 305 183 0 chr6 38763101 38763265 -150516289 + L2 LINE L2 2719 2912 -402 2210 89 41 0 chr6 38763374 38763666 -150515888 - AluSx SINE Alu -8 304 1 193 337 67 11 chr6 38763879 38763968 -150515586 - L2 LINE L2 -17 3296 3203 2467 81 0 31 chr6 38765143 38765466 -150514088 - AluSp SINE Alu 0 313 1 2433 68 3 0 chr6 38765473 38765766 -150513788 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 38765878 38765964 -150513590 - MIR SINE MIR -66 142 56 1118 61 0 0 chr6 38766118 38766249 -150513305 + AluY SINE Alu 2 132 -179 189 323 115 15 chr6 38766337 38766467 -150513087 + L2 LINE L2 3171 3313 0 537 286 169 11 chr6 38766560 38766833 -150512721 + L2 LINE L2 2998 3313 0 567 160 126 8 chr6 38767177 38767296 -150512258 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 38767485 38767514 -150512040 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2366 103 0 0 chr6 38768320 38768622 -150510932 + AluSg SINE Alu 1 302 -8 350 203 40 0 chr6 38768923 38768997 -150510557 + Tigger5 DNA MER2_type 1 77 -2246 342 203 0 0 chr6 38768997 38769056 -150510498 - Tigger5 DNA MER2_type -2 2321 2263 2566 77 0 0 chr6 38769056 38769356 -150510198 - AluSc SINE Alu -9 300 1 236 228 18 0 chr6 38769374 38769431 -150510123 + Tigger5 DNA MER2_type 2266 2323 0 2797 23 3 7 chr6 38769665 38769975 -150509579 + AluY SINE Alu 1 309 -2 1939 165 0 7 chr6 38770268 38770571 -150508983 - AluJb SINE Alu -6 306 6 823 232 79 21 chr6 38770572 38770762 -150508792 - MER58C DNA MER1_type -5 210 10 438 337 55 6 chr6 38770779 38770960 -150508594 + MIR3 SINE MIR 19 208 0 2357 109 0 0 chr6 38770999 38771301 -150508253 - AluY SINE Alu -7 304 3 2613 66 0 0 chr6 38771651 38771956 -150507598 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 38771999 38772044 -150507510 + GA-rich Low_complexity Low_complexity 3 47 0 2049 151 3 0 chr6 38772295 38772593 -150506961 - AluJb SINE Alu -13 299 1 820 161 0 8 chr6 38774366 38774490 -150505064 + FLAM_C SINE Alu 1 123 -20 1228 191 5 0 chr6 38774508 38774712 -150504842 + AluJb SINE Alu 85 289 -23 1894 109 91 0 chr6 38776593 38776867 -150502687 + AluSx SINE Alu 1 299 -13 533 161 0 21 chr6 38776870 38776963 -150502591 + AluJ/FLAM SINE Alu 2 92 -220 2089 106 39 3 chr6 38776963 38777247 -150502307 + AluSp SINE Alu 1 294 -19 1522 139 9 0 chr6 38777248 38777463 -150502091 + AluSg/x SINE Alu 80 296 -14 2387 89 7 0 chr6 38777498 38777801 -150501753 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 38777801 38777955 -150501599 - L1ME4a LINE L1 -108 6013 5834 2304 90 7 0 chr6 38777970 38778258 -150501296 - AluY SINE Alu -20 291 2 267 242 33 0 chr6 38778280 38778371 -150501183 - L1ME4a LINE L1 -525 5596 5503 1840 150 24 24 chr6 38778613 38778906 -150500648 - AluSx SINE Alu -19 293 1 2075 47 0 0 chr6 38778984 38779220 -150500334 + AluY SINE Alu 63 298 -13 2176 149 7 0 chr6 38781143 38781451 -150498103 - AluSx SINE Alu -2 310 1 1572 163 63 53 chr6 38781451 38781750 -150497804 - AluJo SINE Alu -9 303 1 2192 100 21 7 chr6 38782623 38782914 -150496640 + AluSg SINE Alu 1 295 -15 515 191 63 24 chr6 38782971 38783097 -150496457 + MIR SINE MIR 85 215 -47 22 0 0 0 chr6 38783124 38783146 -150496408 + AT_rich Low_complexity Low_complexity 1 22 0 2276 111 3 0 chr6 38783146 38783444 -150496110 - AluSx SINE Alu -13 299 1 822 165 0 0 chr6 38783660 38783793 -150495761 - FLAM_C SINE Alu 0 133 1 1539 173 4 8 chr6 38784061 38784316 -150495238 - AluJo SINE Alu -16 296 43 246 274 21 21 chr6 38784327 38784422 -150495132 - L2 LINE L2 -285 2987 2893 189 303 42 70 chr6 38784504 38784646 -150494908 - L2 LINE L2 -547 2767 2630 2320 105 0 0 chr6 38784807 38785103 -150494451 + AluSp SINE Alu 1 296 -17 2134 89 43 0 chr6 38785520 38785802 -150493752 + AluSq SINE Alu 1 294 -19 2378 81 16 13 chr6 38785806 38786115 -150493439 - AluSq SINE Alu -3 310 1 2250 101 0 10 chr6 38786151 38786315 -150493239 - AluSc SINE Alu -14 295 134 2443 75 0 0 chr6 38786315 38786610 -150492944 - AluY SINE Alu -15 296 2 2250 101 0 10 chr6 38786610 38786743 -150492811 - AluSc SINE Alu -175 134 1 406 187 28 165 chr6 38787168 38787269 -150492285 + MER5A DNA MER1_type 31 144 -45 2288 123 0 19 chr6 38787269 38787587 -150491967 - AluSx SINE Alu 0 312 1 406 187 28 165 chr6 38787587 38787601 -150491953 + MER5A DNA MER1_type 144 158 -31 2484 87 6 0 chr6 38787601 38787912 -150491642 - AluSp SINE Alu 0 313 1 406 187 28 165 chr6 38787912 38787977 -150491577 + MER5A DNA MER1_type 158 187 -2 2118 96 53 0 chr6 38788062 38788344 -150491210 - AluSq SINE Alu -16 297 1 857 209 12 117 chr6 38788414 38788663 -150490891 - AluJo SINE Alu -89 223 1 1880 136 46 0 chr6 38788698 38788978 -150490576 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 38788978 38789269 -150490285 - AluJo SINE Alu -7 305 10 2159 108 0 7 chr6 38789694 38789982 -150489572 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 38792088 38792108 -150487446 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2589 67 0 0 chr6 38795180 38795480 -150484074 + AluY SINE Alu 1 300 -11 830 93 0 0 chr6 38796743 38796861 -150482693 + L1PB1 LINE L1 6017 6134 -17 2041 156 0 10 chr6 38797585 38797893 -150481661 - AluJb SINE Alu -7 305 1 2354 100 0 0 chr6 38797903 38798202 -150481352 - AluY SINE Alu -12 299 1 551 218 124 42 chr6 38799645 38799659 -150479895 - L2 LINE L2 -576 2738 2727 2422 95 0 0 chr6 38799659 38799963 -150479591 - AluSg SINE Alu -6 304 1 551 218 124 42 chr6 38799963 38800141 -150479413 - L2 LINE L2 -587 2727 2530 * 983 240 43 43 chr6 38800137 38800441 -150479113 + L2 LINE L2 2398 2701 -613 2459 87 0 6 chr6 38800467 38800778 -150478776 + AluSg SINE Alu 1 309 -1 822 167 0 15 chr6 38800778 38800910 -150478644 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 38800919 38801229 -150478325 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 38801229 38801778 -150477776 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 38801802 38802369 -150477185 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 38802385 38802438 -150477116 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 38802439 38802583 -150476971 + L1MA10 LINE L1 6215 6334 0 261 325 136 70 chr6 38804097 38804360 -150475194 - L2 LINE L2 -9 3263 3019 1759 170 11 0 chr6 38804360 38804637 -150474917 - AluJo SINE Alu -21 291 12 261 325 136 70 chr6 38804637 38805253 -150474301 - L2 LINE L2 -253 3019 2289 14802 62 6 1 chr6 38805295 38807974 -150471580 + L1PA6 LINE L1 3464 6152 -2 774 210 58 43 chr6 38807993 38808123 -150471431 - Charlie7 DNA MER1_type -81 2531 2404 2518 77 0 3 chr6 38808123 38808434 -150471120 + AluSg SINE Alu 1 310 0 774 210 58 43 chr6 38808434 38808631 -150470923 - Charlie7 DNA MER1_type -208 2404 2199 2298 77 44 7 chr6 38808641 38808939 -150470615 + AluY SINE Alu 3 311 0 187 324 56 0 chr6 38809410 38809481 -150470073 + MIR SINE MIR 113 187 -75 2739 48 0 0 chr6 38809484 38809795 -150469759 + AluY SINE Alu 1 311 0 742 153 38 30 chr6 38809806 38809937 -150469617 + FLAM_C SINE Alu 2 133 0 2295 97 3 3 chr6 38810367 38810676 -150468878 + AluSq SINE Alu 1 309 -4 2039 134 67 6 chr6 38810940 38811298 -150468256 + LTR8A LTR ERV1 2 381 -346 1096 165 28 0 chr6 38811298 38811480 -150468074 - AluJo SINE Alu -7 305 119 885 150 0 0 chr6 38811515 38811648 -150467906 - AluJo SINE Alu -179 133 1 1115 174 83 88 chr6 38811648 38811818 -150467736 + LTR8A LTR ERV1 379 548 -179 1581 175 102 0 chr6 38811818 38812092 -150467462 - AluJo SINE Alu -10 302 1 1115 174 83 88 chr6 38812092 38812272 -150467282 + LTR8A LTR ERV1 548 727 0 2384 92 0 0 chr6 38812458 38812752 -150466802 - AluSx SINE Alu -18 294 1 281 258 82 0 chr6 38812773 38812870 -150466684 + L1ME4a LINE L1 5533 5637 -484 736 194 12 42 chr6 38812877 38813042 -150466512 - MLT1A1 LTR MaLR 0 365 206 1961 133 9 22 chr6 38813054 38813449 -150466105 - AluJo SINE Alu 0 391 1 674 190 89 17 chr6 38813467 38813646 -150465908 - MLT1A1 LTR MaLR -182 192 1 1772 164 14 17 chr6 38813709 38813896 -150465658 - AluJb SINE Alu 0 312 136 2445 91 0 0 chr6 38813896 38814193 -150465361 - AluSg SINE Alu -13 297 1 1772 164 14 17 chr6 38814193 38814325 -150465229 - AluJb SINE Alu -176 136 5 381 236 101 104 chr6 38814399 38814664 -150464890 + L1ME4a LINE L1 5761 6026 -95 2163 111 0 35 chr6 38814664 38814980 -150464574 - AluSx SINE Alu -7 305 1 381 236 101 104 chr6 38814980 38815002 -150464552 + L1ME4a LINE L1 6026 6047 -74 1574 173 91 58 chr6 38815005 38815034 -150464520 - MLT2D LTR ERVL -4 410 383 231 36 0 0 chr6 38815034 38815062 -150464492 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1574 173 91 58 chr6 38815062 38815426 -150464128 - MLT2D LTR ERVL -31 383 4 206 230 0 11 chr6 38815508 38815595 -150463959 + (TA)n Simple_repeat Simple_repeat 1 86 0 1858 169 125 0 chr6 38815626 38815994 -150463560 + MLT2D LTR ERVL 1 414 0 276 303 92 32 chr6 38816153 38816338 -150463216 - L2 LINE L2 -252 3061 2866 1049 158 19 0 chr6 38816405 38816563 -150462991 - AluJb SINE Alu -15 297 137 2184 124 0 3 chr6 38816566 38816865 -150462689 - AluSx SINE Alu -14 298 1 863 245 108 99 chr6 38816869 38817169 -150462385 + L1MC4a LINE L1 6411 6707 -1101 2417 88 3 0 chr6 38817169 38817474 -150462080 + AluY SINE Alu 1 306 -5 863 245 108 99 chr6 38817474 38817487 -150462067 + L1MC4a LINE L1 6707 6718 -1090 2102 148 3 22 chr6 38817487 38817805 -150461749 + AluSx SINE Alu 1 312 0 863 245 108 99 chr6 38817805 38817964 -150461590 + L1MC4a LINE L1 6718 6888 -920 1764 103 0 0 chr6 38817976 38818200 -150461354 + AluSc SINE Alu 76 299 -10 233 240 27 0 chr6 38818200 38818275 -150461279 + L1MC4 LINE L1 6962 7038 -1004 1653 138 83 0 chr6 38818290 38818543 -150461011 + AluJb SINE Alu 24 297 -15 292 181 103 43 chr6 38818563 38818679 -150460875 + L1MC5 LINE L1 6940 7062 -899 644 96 0 0 chr6 38818697 38818780 -150460774 + AluS SINE Alu 2 84 -228 564 242 97 118 chr6 38818805 38819426 -150460128 + L1MC4 LINE L1 7098 7730 -312 319 123 0 0 chr6 38819426 38819483 -150460071 + L1MA8 LINE L1 6225 6281 -10 564 242 97 118 chr6 38819483 38819646 -150459908 + L1MC4 LINE L1 7730 7867 -175 2239 122 0 3 chr6 38819646 38819942 -150459612 - AluSx SINE Alu -17 295 1 564 242 97 118 chr6 38819942 38819969 -150459585 + L1MC4 LINE L1 7867 7893 -149 2057 124 0 0 chr6 38819981 38820255 -150459299 + AluSx SINE Alu 24 297 -15 3026 163 19 74 chr6 38820264 38820376 -150459178 + L1MA7 LINE L1 5510 5627 -670 2418 100 0 0 chr6 38820376 38820676 -150458878 + AluSq SINE Alu 1 300 -13 3026 163 19 74 chr6 38820676 38820853 -150458701 + L1MA7 LINE L1 5627 5812 -485 2453 87 0 3 chr6 38820853 38821165 -150458389 + AluY SINE Alu 1 311 0 3026 163 19 74 chr6 38821165 38821631 -150457923 + L1MA7 LINE L1 5812 6180 -117 2523 61 0 3 chr6 38821631 38821927 -150457627 + AluSq SINE Alu 1 295 -18 3026 163 19 74 chr6 38821927 38822030 -150457524 + L1MA7 LINE L1 6180 6287 -10 21 0 0 0 chr6 38822042 38822063 -150457491 + AT_rich Low_complexity Low_complexity 1 21 0 377 231 149 15 chr6 38822095 38822229 -150457325 + L1MC4 LINE L1 7891 8042 0 29 47 0 0 chr6 38822410 38822453 -150457101 + AT_rich Low_complexity Low_complexity 1 43 0 446 312 246 22 chr6 38822848 38824154 -150455400 + L2 LINE L2 1494 3085 -187 255 343 206 9 chr6 38824256 38824489 -150455065 + L2 LINE L2 2994 3272 0 275 297 0 0 chr6 38826514 38826578 -150452976 + L2 LINE L2 3242 3305 -8 336 172 0 91 chr6 38827153 38827252 -150452302 + CT-rich Low_complexity Low_complexity 2 91 0 340 309 127 34 chr6 38827407 38827434 -150452120 - MIR SINE MIR 0 262 239 213 39 0 0 chr6 38827434 38827460 -150452094 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 340 309 127 34 chr6 38827460 38827668 -150451886 - MIR SINE MIR -23 239 5 590 266 133 5 chr6 38828643 38828861 -150450693 + MIR SINE MIR 1 246 -16 2352 91 0 19 chr6 38828894 38829201 -150450353 + AluSq SINE Alu 1 301 -12 1139 273 96 13 chr6 38829286 38829736 -150449818 + L2 LINE L2 720 1206 -2108 286 205 171 26 chr6 38829786 38829903 -150449651 + L2 LINE L2 1705 1838 -1476 2083 141 3 3 chr6 38829999 38830304 -150449250 - AluSx SINE Alu -7 305 1 294 306 10 0 chr6 38830415 38830513 -150449041 - L1ME3A LINE L1 -208 5962 5864 2776 251 140 36 chr6 38830527 38830832 -150448722 + L2 LINE L2 1826 2098 -1215 2193 117 7 7 chr6 38830832 38831132 -150448422 - AluSx SINE Alu -12 300 1 2776 251 140 36 chr6 38831132 38832150 -150447404 + L2 LINE L2 2098 3313 0 246 264 104 9 chr6 38832686 38832792 -150446762 + MIR SINE MIR 145 260 -2 290 304 78 46 chr6 38832794 38832878 -150446676 - MIR SINE MIR 0 262 182 1874 163 14 10 chr6 38832878 38833172 -150446382 - AluJo SINE Alu -17 295 1 290 304 78 46 chr6 38833172 38833313 -150446241 - MIR SINE MIR -80 182 34 256 208 21 0 chr6 38833746 38833794 -150445760 + MER91 DNA MER1_type 74 122 -18 374 357 7 0 chr6 38834906 38835060 -150444494 + (TATG)n Simple_repeat Simple_repeat 2 156 0 222 227 76 30 chr6 38835126 38835192 -150444362 - MIR SINE MIR -187 75 7 21 57 0 0 chr6 38837267 38837302 -150442252 + GC_rich Low_complexity Low_complexity 1 35 0 439 264 82 0 chr6 38839325 38839484 -150440070 + L1M4 LINE L1 4494 4665 -1481 504 90 10 90 chr6 38839488 38839588 -150439966 - AluSp SINE Alu -181 132 41 22 35 0 0 chr6 38839596 38839625 -150439929 + AT_rich Low_complexity Low_complexity 1 29 0 249 371 46 8 chr6 38839956 38840193 -150439361 - MER41B LTR ERV1 -209 426 181 2217 109 10 16 chr6 38840236 38840548 -150439006 - AluSg SINE Alu 0 310 1 475 132 44 172 chr6 38840554 38840613 -150438941 + Charlie1 DNA MER1_type 2524 2589 -172 1873 79 0 0 chr6 38840613 38840840 -150438714 + AluSc SINE Alu 67 293 -16 475 132 44 172 chr6 38840840 38840994 -150438560 + Charlie1 DNA MER1_type 2589 2697 -64 2108 82 4 4 chr6 38840994 38841262 -150438292 - AluSp SINE Alu -45 268 1 475 132 44 172 chr6 38841262 38841320 -150438234 + Charlie1 DNA MER1_type 2697 2761 0 21 0 0 0 chr6 38841631 38841652 -150437902 + GC_rich Low_complexity Low_complexity 1 21 0 2247 91 0 24 chr6 38843794 38844090 -150435464 - AluSg SINE Alu -21 289 1 2153 112 0 13 chr6 38845001 38845314 -150434240 + AluY SINE Alu 1 309 -2 1250 107 141 0 chr6 38845503 38845709 -150433845 + MSTC LTR MaLR 1 235 -193 966 238 11 48 chr6 38845712 38846064 -150433490 + MSTD-int LTR MaLR 945 1365 -320 234 303 45 0 chr6 38846417 38846506 -150433048 + MIR SINE MIR 43 135 -73 578 228 29 7 chr6 38846562 38846698 -150432856 + MSTD LTR MaLR 1 139 -257 673 244 70 0 chr6 38846728 38846900 -150432654 + MSTD LTR MaLR 206 389 -7 2319 106 3 0 chr6 38847016 38847309 -150432245 - AluSq SINE Alu -12 301 8 239 323 110 16 chr6 38847560 38847687 -150431867 - L2 LINE L2 -9 3304 3166 3274 98 121 0 chr6 38847767 38848237 -150431317 - MER1A DNA MER1_type 0 527 1 2289 95 3 7 chr6 38849116 38849532 -150430022 + AluSp SINE Alu 3 417 0 8975 78 17 5 chr6 38850145 38851323 -150428231 - SVA Other Other 0 1386 195 196 279 32 110 chr6 38851384 38851424 -150428130 + MIR SINE MIR 65 107 -155 2492 83 3 3 chr6 38851424 38851737 -150427817 - AluSp SINE Alu 0 313 1 196 279 32 110 chr6 38851737 38851850 -150427704 + MIR SINE MIR 107 206 -56 2112 116 0 0 chr6 38851962 38852265 -150427289 - AluY SINE Alu -8 303 1 24 0 0 0 chr6 38853406 38853430 -150426124 + AT_rich Low_complexity Low_complexity 1 24 0 2307 93 7 0 chr6 38853781 38854091 -150425463 - AluSx SINE Alu 0 312 1 2407 48 10 0 chr6 38854097 38854392 -150425162 - AluY SINE Alu -13 298 1 21 57 0 0 chr6 38854554 38854589 -150424965 + AT_rich Low_complexity Low_complexity 1 35 0 2200 100 0 3 chr6 38855200 38855499 -150424055 - AluSc SINE Alu -11 298 1 2415 61 0 0 chr6 38855738 38856031 -150423523 + AluY SINE Alu 1 293 -18 2109 122 3 0 chr6 38856516 38856819 -150422735 - AluSp SINE Alu -9 304 1 971 119 0 0 chr6 38857036 38857170 -150422384 + AluSx SINE Alu 1 134 -179 2236 98 3 3 chr6 38857171 38857476 -150422078 + AluSq SINE Alu 1 305 -8 1067 141 0 0 chr6 38857536 38857692 -150421862 + AluSx SINE Alu 119 274 -36 201 74 0 0 chr6 38857702 38857729 -150421825 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1173 130 0 22 chr6 38858321 38858481 -150421073 - AluSg/x SINE Alu -19 291 134 2089 103 9 28 chr6 38858481 38858683 -150420871 - AluSp SINE Alu 0 313 118 2132 94 0 38 chr6 38858683 38859001 -150420553 - AluSx SINE Alu -6 306 1 2089 103 9 28 chr6 38859001 38859117 -150420437 - AluSp SINE Alu -195 118 1 1173 130 0 22 chr6 38859117 38859140 -150420414 - AluSg/x SINE Alu -176 134 112 451 111 0 100 chr6 38859142 38859219 -150420335 + AluJ/FRAM SINE Alu 227 295 -17 2118 122 3 0 chr6 38859219 38859530 -150420024 + AluSx SINE Alu 1 312 0 451 111 0 100 chr6 38859530 38859542 -150420012 + AluJ/FRAM SINE Alu 295 307 -5 191 276 10 0 chr6 38859691 38859789 -150419765 + (TG)n Simple_repeat Simple_repeat 1 99 0 1610 270 111 15 chr6 38860360 38860901 -150418653 + MLT1E LTR MaLR 1 593 0 1835 138 16 13 chr6 38861632 38861807 -150417747 - AluSx SINE Alu -6 306 128 255 31 0 0 chr6 38861807 38861839 -150417715 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1835 138 16 13 chr6 38861839 38861967 -150417587 - AluSx SINE Alu -184 128 2 270 160 128 43 chr6 38862378 38862472 -150417082 + L1MC5 LINE L1 7834 7935 -26 856 155 0 0 chr6 38862491 38862620 -150416934 + FLAM_C SINE Alu 1 129 -4 1108 218 123 3 chr6 38862647 38862932 -150416622 + L1MD3 LINE L1 6783 7101 -894 579 291 69 52 chr6 38862958 38863377 -150416177 + L1M4 LINE L1 810 1235 -5620 920 83 0 0 chr6 38863405 38863525 -150416029 + AluSp/q SINE Alu 175 294 -19 291 225 0 79 chr6 38863543 38863632 -150415922 + L1M4 LINE L1 1205 1286 -5573 * 684 277 39 9 chr6 38863629 38863860 -150415694 + L1M4 LINE L1 1216 1453 -5406 1968 135 7 0 chr6 38863860 38864157 -150415397 + AluSx SINE Alu 1 299 -13 455 245 27 161 chr6 38864159 38864337 -150415217 + L1M4 LINE L1 1985 2185 -4774 2242 95 3 0 chr6 38864337 38864631 -150414923 + AluSg SINE Alu 1 295 -15 455 245 27 161 chr6 38864631 38864742 -150414812 + L1M4 LINE L1 2185 2198 -4761 1659 159 0 53 chr6 38864742 38865062 -150414492 + AluJo SINE Alu 10 312 0 455 245 27 161 chr6 38865062 38865212 -150414342 + L1M4 LINE L1 2198 2366 -4593 979 157 0 0 chr6 38865245 38865398 -150414156 + AluSg/x SINE Alu 135 287 -25 909 180 6 17 chr6 38865505 38865683 -150413871 - FRAM SINE Alu -7 169 1 1645 147 0 0 chr6 38865977 38866236 -150413318 + AluSx SINE Alu 1 259 -53 634 101 10 20 chr6 38866287 38866386 -150413168 + MER4A LTR ERV1 1 98 -566 1876 109 8 78 chr6 38866387 38866461 -150413093 + MER4A LTR ERV1 264 342 -322 2172 98 0 13 chr6 38866461 38866768 -150412786 + AluSx SINE Alu 1 303 -9 1876 109 8 78 chr6 38866768 38867061 -150412493 + MER4A LTR ERV1 342 664 0 413 19 19 0 chr6 38867655 38867709 -150411845 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2277 65 7 10 chr6 38867709 38868015 -150411539 - AluSp SINE Alu -8 305 1 1611 133 6 91 chr6 38868730 38869060 -150410494 - AluSx SINE Alu -10 302 1 189 0 0 0 chr6 38869060 38869081 -150410473 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1963 115 4 4 chr6 38869083 38869361 -150410193 - AluSx SINE Alu -32 280 3 2122 121 7 0 chr6 38869391 38869698 -150409856 - AluSq SINE Alu -4 309 1 324 167 23 0 chr6 38869708 38869779 -150409775 - AluJb SINE Alu -2 300 240 789 223 4 51 chr6 38869787 38870060 -150409494 + pTR5 LTR ERV1 769 1028 -1410 4612 78 11 211 chr6 38870142 38871175 -150408379 + LTR12 LTR ERV1 1 826 0 1478 146 8 4 chr6 38871175 38871415 -150408139 - AluJb SINE Alu -71 241 1 2072 121 3 0 chr6 38871710 38872008 -150407546 - AluSq SINE Alu -14 299 1 36304 89 20 24 chr6 38872796 38876385 -150403169 + L1PA6 LINE L1 22 3654 -2500 249 211 13 53 chr6 38876385 38876461 -150403093 - MSTB2 LTR MaLR -249 208 136 36304 89 20 24 chr6 38876461 38878951 -150400603 + L1PA6 LINE L1 3654 6152 -2 786 219 62 80 chr6 38878970 38879100 -150400454 - Charlie7 DNA MER1_type -81 2531 2400 2366 77 0 3 chr6 38879100 38879411 -150400143 + AluSg SINE Alu 1 310 0 786 219 62 80 chr6 38879411 38879618 -150399936 - Charlie7 DNA MER1_type -212 2400 2203 2155 77 44 7 chr6 38879618 38879916 -150399638 + AluY SINE Alu 3 311 0 786 219 62 80 chr6 38879916 38880062 -150399492 - Charlie7 DNA MER1_type -409 2203 2056 187 324 56 0 chr6 38880387 38880458 -150399096 + MIR SINE MIR 113 187 -75 2589 48 0 0 chr6 38880461 38880772 -150398782 + AluY SINE Alu 1 311 0 742 156 39 0 chr6 38880796 38880924 -150398630 + FLAM_C SINE Alu 11 143 0 2149 97 3 3 chr6 38881344 38881653 -150397901 + AluSq SINE Alu 1 309 -4 2155 131 67 6 chr6 38881917 38882275 -150397279 + LTR8A LTR ERV1 2 381 -346 1008 162 28 0 chr6 38882278 38882457 -150397097 - AluJo SINE Alu -10 302 119 821 150 0 0 chr6 38882492 38882625 -150396929 - AluJo SINE Alu -179 133 1 1217 177 71 77 chr6 38882625 38882795 -150396759 + LTR8A LTR ERV1 379 548 -179 1442 175 102 0 chr6 38882795 38883069 -150396485 - AluJo SINE Alu -10 302 1 1217 177 71 77 chr6 38883069 38883249 -150396305 + LTR8A LTR ERV1 548 727 0 2242 92 0 0 chr6 38883435 38883729 -150395825 - AluSx SINE Alu -18 294 1 302 258 82 0 chr6 38883750 38883847 -150395707 + L1ME LINE L1 5533 5637 -484 788 177 17 57 chr6 38883854 38884029 -150395525 - MLT1A1 LTR MaLR 0 365 198 1806 133 9 22 chr6 38884031 38884426 -150395128 - AluJo SINE Alu 0 391 1 729 190 89 17 chr6 38884444 38884623 -150394931 - MLT1A1 LTR MaLR -182 192 1 896 164 23 28 chr6 38884686 38884873 -150394681 - AluJb SINE Alu 0 312 136 2298 91 0 0 chr6 38884873 38885170 -150394384 - AluSg SINE Alu -13 297 1 896 164 23 28 chr6 38885170 38885187 -150394367 - AluJb SINE Alu -176 136 120 601 49 0 0 chr6 38885187 38885268 -150394286 + AluY SINE Alu 226 306 -6 1287 146 103 53 chr6 38885270 38885571 -150393983 + L1ME3A LINE L1 5392 5707 -652 198 0 0 0 chr6 38885589 38885611 -150393943 + (A)n Simple_repeat Simple_repeat 1 22 0 266 235 139 42 chr6 38885849 38886015 -150393539 + L1ME3A LINE L1 5988 6169 -1 260 160 0 40 chr6 38886776 38886826 -150392728 - MLT2B1 LTR ERVL 0 520 473 740 236 16 16 chr6 38886826 38887008 -150392546 - MLT2D LTR ERVL -232 182 1 185 227 53 53 chr6 38887008 38887083 -150392471 + MIR SINE MIR 180 254 -8 572 188 116 0 chr6 38887861 38887973 -150391581 + FLAM_C SINE Alu 3 127 -16 211 295 26 0 chr6 38888561 38888639 -150390915 - MIR3 SINE MIR -43 165 86 514 312 59 21 chr6 38889069 38889444 -150390110 + HAL1 LINE L1 1841 2229 -278 2256 212 35 17 chr6 38894403 38894926 -150384628 - L1MC3 LINE L1 -1 7784 7249 1121 244 123 51 chr6 38894926 38895397 -150384157 - MLT1D LTR MaLR 0 505 1 2256 212 35 17 chr6 38895397 38895416 -150384138 - L1MC3 LINE L1 -536 7249 7232 284 222 19 130 chr6 38895887 38896049 -150383505 + HUERS-P3 LTR ERV1 633 776 -4095 767 152 0 38 chr6 38896062 38896185 -150383369 + AluJo SINE Alu 10 129 -183 1854 151 3 0 chr6 38896185 38896497 -150383057 + AluSp SINE Alu 1 313 0 2165 96 3 6 chr6 38896629 38896941 -150382613 + AluY SINE Alu 1 311 0 1696 91 4 21 chr6 38897155 38897397 -150382157 - AluSx SINE Alu -11 301 64 2617 124 36 14 chr6 38897467 38897886 -150381668 - MSTA LTR MaLR 0 428 1 394 334 52 36 chr6 38898009 38898485 -150381069 + HUERS-P3 LTR ERV1 2546 2708 -4093 3585 165 20 28 chr6 38898690 38898822 -150380732 + L1M1 LINE L1 3076 3208 -4357 1356 216 0 10 chr6 38898822 38899113 -150380441 + AluJb SINE Alu 1 288 -24 3585 165 20 28 chr6 38899113 38900259 -150379295 + L1M1 LINE L1 3208 4350 -3215 1426 199 42 42 chr6 38900262 38900593 -150378961 + L1PB1 LINE L1 13 343 -7222 186 311 68 0 chr6 38901168 38901242 -150378312 - MIR SINE MIR -72 136 58 215 77 0 26 chr6 38901550 38901589 -150377965 + (CAA)n Simple_repeat Simple_repeat 2 39 0 510 303 102 39 chr6 38901649 38902220 -150377334 + HAL1 LINE L1 1841 2447 -60 902 120 0 51 chr6 38907069 38907227 -150372327 - AluSg/x SINE Alu -42 268 119 216 0 0 0 chr6 38907227 38907251 -150372303 + (T)n Simple_repeat Simple_repeat 1 24 0 530 148 0 0 chr6 38907251 38907339 -150372215 - AluJb SINE Alu -179 133 46 244 104 0 0 chr6 38908540 38908588 -150370966 - LTR66 LTR ERVL -169 441 394 1044 159 0 0 chr6 38908594 38908826 -150370728 + (TA)n Simple_repeat Simple_repeat 2 233 0 2582 27 0 7 chr6 38911522 38911834 -150367720 - AluYa5 SINE Alu 0 311 1 15151 197 13 21 chr6 38911834 38912422 -150367132 + L1PB1 LINE L1 2652 3243 -4327 2362 97 7 0 chr6 38912422 38912721 -150366833 - AluY SINE Alu -9 302 2 15151 197 13 21 chr6 38912721 38913768 -150365786 + L1PB1 LINE L1 3243 4296 -3274 2028 139 0 17 chr6 38913768 38914069 -150365485 + AluSx SINE Alu 7 302 -10 15151 197 13 21 chr6 38914069 38914651 -150364903 + L1PB1 LINE L1 4296 4881 -2689 7884 48 3 11 chr6 38914651 38916203 -150363351 + SVA Other Other 1 1383 -3 15151 197 13 21 chr6 38916203 38916223 -150363331 + L1PB1 LINE L1 4881 4900 -2670 2326 94 0 25 chr6 38916223 38916543 -150363011 + AluSp SINE Alu 1 312 -1 15151 197 13 21 chr6 38916543 38916776 -150362778 + L1PB1 LINE L1 4900 5133 -2437 2387 84 3 0 chr6 38916776 38917072 -150362482 + AluSp SINE Alu 1 297 -16 15151 197 13 21 chr6 38917072 38917292 -150362262 + L1PB1 LINE L1 5133 5353 -2217 2183 85 31 7 chr6 38917292 38917586 -150361968 + AluY SINE Alu 1 301 -10 15151 197 13 21 chr6 38917586 38919777 -150359777 + L1PB1 LINE L1 5353 7570 0 1371 189 94 103 chr6 38919808 38920362 -150359192 + L1M4 LINE L1 4477 5025 -1121 845 158 43 0 chr6 38920414 38920598 -150358956 - Charlie5 DNA MER1_type -49 2563 2372 506 335 71 18 chr6 38921011 38921348 -150358206 + L2 LINE L2 2959 3313 0 2073 222 42 10 chr6 38922792 38923297 -150356257 - L1MC3 LINE L1 -16 7769 7249 848 187 143 118 chr6 38923316 38923680 -150355874 - MLT1D LTR MaLR -17 373 1 237 272 64 48 chr6 38924006 38924212 -150355342 - MER54B LTR ERVL -541 252 67 265 121 30 121 chr6 38924263 38924329 -150355225 + MER65-int LTR ERV1 713 772 -4099 756 130 0 82 chr6 38924346 38924492 -150355062 + FLAM_C SINE Alu 10 143 0 2506 74 3 0 chr6 38924935 38925245 -150354309 + AluY SINE Alu 1 311 0 3126 106 19 6 chr6 38925252 38925363 -150354191 + L1PB1 LINE L1 5674 5782 -369 306 107 0 0 chr6 38925363 38925419 -150354135 + (TA)n Simple_repeat Simple_repeat 1 56 0 3126 106 19 6 chr6 38925419 38925777 -150353777 + L1PB1 LINE L1 5782 6149 -2 23 0 0 0 chr6 38925779 38925802 -150353752 + AT_rich Low_complexity Low_complexity 1 23 0 373 186 12 12 chr6 38925835 38925921 -150353633 + Charlie1 DNA MER1_type 2264 2349 -412 1014 141 0 0 chr6 38925924 38926073 -150353481 + FRAM SINE Alu 2 150 -26 280 221 66 49 chr6 38927104 38927226 -150352328 + Charlie1 DNA MER1_type 2285 2408 -353 1850 126 32 0 chr6 38927237 38927522 -150352032 + L1PA16 LINE L1 5849 6142 -24 1792 87 12 8 chr6 38927522 38927764 -150351790 - AluSp SINE Alu -1 312 70 268 30 0 0 chr6 38927764 38927797 -150351757 - AluSp SINE Alu -269 33 1 22 35 0 0 chr6 38927809 38927838 -150351716 + AT_rich Low_complexity Low_complexity 1 29 0 787 234 30 0 chr6 38928184 38928351 -150351203 - MLT1A1 LTR MaLR -187 178 7 1519 267 68 21 chr6 38928361 38928929 -150350625 - L1MDa LINE L1 -3313 3227 2615 3078 111 4 38 chr6 38928929 38929338 -150350216 + L1PA13 LINE L1 5684 6075 -88 6508 112 20 13 chr6 38929338 38930285 -150349269 + LTR13 LTR ERVK 1 954 0 3078 111 4 38 chr6 38930285 38930372 -150349182 + L1PA13 LINE L1 6075 6163 0 1519 267 68 21 chr6 38930372 38930549 -150349005 - L1MDa LINE L1 -3925 2615 2448 5429 221 47 16 chr6 38930554 38932123 -150347431 + L1MEc LINE L1 1515 4283 -1932 308 189 0 0 chr6 38932136 38932189 -150347365 - L1M1 LINE L1 -6265 1300 1248 2276 137 8 32 chr6 38932231 38932604 -150346950 - THE1B LTR MaLR 0 364 1 246 238 16 0 chr6 38937384 38937447 -150342107 + MIR SINE MIR 102 165 -97 568 87 33 0 chr6 38938331 38938423 -150341131 + L1PB1 LINE L1 6056 6150 -1 2286 107 0 0 chr6 38938440 38938739 -150340815 + AluSg SINE Alu 1 299 -11 1030 266 51 34 chr6 38938743 38939251 -150340303 - L1M4 LINE L1 -2045 4101 3585 1645 168 19 74 chr6 38939252 38939616 -150339938 - MER2 DNA MER2_type -1 344 1 337 314 25 29 chr6 38939627 38939869 -150339685 - L1M4 LINE L1 -2578 3568 3328 2960 40 0 0 chr6 38940059 38940411 -150339143 - L1PA4 LINE L1 -5 6150 5799 409 21 0 0 chr6 38940411 38940458 -150339096 + L1PA4 LINE L1 5757 5803 -352 266 0 29 0 chr6 38940649 38940683 -150338871 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7728 27 6 0 chr6 38940684 38941953 -150337601 - L1PA3 LINE L1 -11 6144 4873 194 62 31 0 chr6 38942668 38942700 -150336854 + (CA)n Simple_repeat Simple_repeat 2 34 0 3561 155 80 1 chr6 38942713 38943390 -150336164 + Tigger3b DNA MER2_type 1 730 -501 8502 165 16 1 chr6 38943390 38944877 -150334677 + L1PA11 LINE L1 2605 4112 -2034 6722 133 28 0 chr6 38944903 38945283 -150334271 + L1PA11 LINE L1 4262 4630 -1544 2311 103 0 3 chr6 38945283 38945575 -150333979 - AluSg SINE Alu -19 291 1 6722 133 28 0 chr6 38945575 38947103 -150332451 + L1PA11 LINE L1 4630 6173 -1 1569 86 37 29 chr6 38947105 38947350 -150332204 + Tigger3b DNA MER2_type 724 970 -262 2553 186 31 99 chr6 38947374 38948052 -150331502 - MER21B LTR ERV1 -14 849 218 894 239 15 15 chr6 38948055 38948315 -150331239 + L1 LINE L1 4214 4473 -1673 * 41727 60 2 1 chr6 38948314 38954464 -150325090 + L1PA6 LINE L1 2 6154 0 203 133 44 0 chr6 38954483 38954528 -150325026 + (TA)n Simple_repeat Simple_repeat 1 47 0 5546 176 19 6 chr6 38954530 38955624 -150323930 + L1 LINE L1 2908 4016 -2130 253 358 30 15 chr6 38958471 38958605 -150320949 - MIR SINE MIR 0 262 127 2189 118 3 0 chr6 38958609 38958906 -150320648 + AluSq SINE Alu 1 298 -15 525 58 0 0 chr6 38958906 38958975 -150320579 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 447 275 8 17 chr6 38959008 38959128 -150320426 - MIR SINE MIR -133 129 11 219 158 18 35 chr6 38959786 38959843 -150319711 + T-rich Low_complexity Low_complexity 3 58 0 474 290 128 84 chr6 38960106 38960644 -150318910 - L1MEd LINE L1 -5350 769 208 432 320 46 47 chr6 38960796 38961421 -150318133 - MERVL LTR ERVL -1550 3935 3282 657 38 0 0 chr6 38961480 38961560 -150317994 + (CA)n Simple_repeat Simple_repeat 1 80 0 310 270 40 40 chr6 38962277 38962403 -150317151 + L1ME LINE L1 12 137 -5933 234 336 0 27 chr6 38962634 38962744 -150316810 + L1ME LINE L1 372 478 -5592 2185 170 44 32 chr6 38962972 38963230 -150316324 - MSTB LTR MaLR -2 424 157 2262 96 0 0 chr6 38963230 38963541 -150316013 + AluSg SINE Alu 1 311 0 2185 170 44 32 chr6 38963541 38963692 -150315862 - MSTB LTR MaLR -269 157 9 647 288 81 31 chr6 38963893 38964487 -150315067 + L1ME LINE L1 455 1078 -4900 2932 99 5 5 chr6 38964667 38965061 -150314493 - L1PA13 LINE L1 0 6163 5770 13444 182 9 24 chr6 38965061 38965801 -150313753 + L1PB2 LINE L1 2315 3064 -3087 2193 128 0 0 chr6 38965801 38966097 -150313457 + AluSx SINE Alu 3 298 -14 13444 182 9 24 chr6 38966097 38967886 -150311668 + L1PB2 LINE L1 3064 4763 -1388 2196 124 0 10 chr6 38967886 38968193 -150311361 + AluSq SINE Alu 1 304 -9 13444 182 9 24 chr6 38968193 38969562 -150309992 + L1PB2 LINE L1 4763 6151 0 201 39 0 0 chr6 38969576 38969602 -150309952 + (CAA)n Simple_repeat Simple_repeat 2 27 0 694 274 29 36 chr6 38969610 38969884 -150309670 + L1ME LINE L1 4353 4624 -1456 865 250 15 0 chr6 38969933 38970133 -150309421 - AluJo SINE Alu -92 220 18 1069 208 68 30 chr6 38970348 38970766 -150308788 - L1M3 LINE L1 -615 5565 5130 185 83 28 0 chr6 38971013 38971049 -150308505 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr6 38971614 38971635 -150307919 + AT_rich Low_complexity Low_complexity 1 21 0 805 219 0 12 chr6 38971950 38972110 -150307444 - MER90 LTR ERV1 0 575 418 1634 239 65 46 chr6 38972119 38972674 -150306880 - MER74A LTR ERVL -3 619 1 1211 258 164 0 chr6 38972694 38973047 -150306507 - MER90 LTR ERV1 -198 416 6 453 308 13 80 chr6 38973179 38973334 -150306220 + L1ME LINE L1 5389 5553 -502 2093 125 0 0 chr6 38973334 38973621 -150305933 - AluSx SINE Alu -25 287 1 453 308 13 80 chr6 38973621 38973711 -150305843 + L1ME LINE L1 5553 5611 -444 2269 104 0 3 chr6 38973711 38974010 -150305544 + AluSg SINE Alu 1 298 -12 453 308 13 80 chr6 38974010 38974075 -150305479 + L1ME LINE L1 5611 5679 -376 195 297 95 20 chr6 38974094 38974242 -150305312 - MIR SINE MIR -1 261 103 348 330 98 8 chr6 38974690 38975087 -150304467 + HAL1 LINE L1 983 1415 -1092 330 107 0 0 chr6 38976903 38976959 -150302595 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 256 173 53 27 chr6 38976964 38977039 -150302515 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 209 195 0 0 chr6 38978503 38978544 -150301010 + (TG)n Simple_repeat Simple_repeat 2 42 0 3334 141 30 21 chr6 38979129 38979967 -150299587 - L1M1 LINE L1 -673 5630 4791 810 148 0 0 chr6 38979968 38980090 -150299464 - FLAM_C SINE Alu -21 122 1 207 100 0 0 chr6 38980290 38980320 -150299234 + (T)n Simple_repeat Simple_repeat 1 30 0 6812 125 39 7 chr6 38980414 38981511 -150298043 - Tigger3b DNA MER2_type -1 1230 99 295 268 55 28 chr6 38981897 38982051 -150297503 + L1MEc LINE L1 1371 1481 -4942 425 300 56 12 chr6 38982134 38982384 -150297170 + L1M4 LINE L1 3310 3570 -2576 1578 185 14 76 chr6 38982399 38982766 -150296788 + MER2 DNA MER2_type 2 345 0 1701 86 0 9 chr6 38982791 38983001 -150296553 + AluSq SINE Alu 1 208 -105 1434 204 14 84 chr6 38983108 38983465 -150296089 + MER41C-int LTR ERV1 2341 2672 -1519 853 138 26 3 chr6 38983465 38983617 -150295937 + MSTA LTR MaLR 1 170 -287 379 281 0 0 chr6 38983696 38983778 -150295776 + FLAM_A SINE Alu 16 97 -36 4820 212 56 35 chr6 38983820 38984142 -150295412 + MER41C-int LTR ERV1 2727 3041 -1150 4972 161 14 4 chr6 38984142 38984917 -150294637 - LTR39 LTR ERV1 0 783 1 4820 212 56 35 chr6 38984917 38985815 -150293739 + MER41C-int LTR ERV1 3041 3972 -219 230 241 36 48 chr6 38985842 38985925 -150293629 + MER21B LTR ERV1 384 465 -398 754 220 100 64 chr6 38985926 38986264 -150293290 + MSTD LTR MaLR 1 348 -17 2029 130 0 60 chr6 38986275 38986628 -150292926 + MER1B DNA MER1_type 1 332 -7 1521 180 48 73 chr6 38986683 38987195 -150292359 + MER4A LTR ERV1 1 521 -76 920 147 0 0 chr6 38987200 38987395 -150292159 + HERVK14 LTR ERVK 5235 5579 -366 * 1414 151 0 9 chr6 38987393 38987425 -150292129 + MER41C-int LTR ERV1 7541 7756 0 1488 70 0 5 chr6 38987425 38987611 -150291943 + HERVK14 LTR ERVK 5575 5759 -186 360 186 0 18 chr6 38987611 38987686 -150291868 + MER41C LTR ERV1 1 61 -493 404 60 0 0 chr6 38987686 38987736 -150291818 + HERVK14 LTR ERVK 5835 5884 -61 1265 139 25 10 chr6 38987761 38987962 -150291592 + LTR3b LTR ERVK 158 361 -139 9325 105 2 0 chr6 38987983 38989220 -150290334 + THE1A-int LTR MaLR 342 1580 0 2277 147 14 8 chr6 38989220 38989573 -150289981 + THE1A LTR MaLR 1 355 0 1872 268 76 13 chr6 38989574 38990185 -150289369 - L1M4 LINE L1 -2499 3647 2977 3119 144 28 18 chr6 38990185 38990685 -150288869 - LTR10B LTR ERV1 0 505 1 1872 268 76 13 chr6 38990685 38990833 -150288721 - L1M4 LINE L1 -3169 2977 2840 1744 222 17 0 chr6 38990843 38991195 -150288359 - MLT1A1 LTR MaLR -1 364 7 343 231 0 0 chr6 38991205 38991283 -150288271 - L1M4 LINE L1 -3313 2833 2756 252 78 0 62 chr6 38991352 38991416 -150288138 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1451 195 0 14 chr6 38991417 38991694 -150287860 - AluJb SINE Alu -39 273 1 654 160 0 0 chr6 38992436 38992536 -150287018 - Tigger1 DNA MER2_type 0 2418 2319 10109 116 151 82 chr6 38992536 38993192 -150286362 - Tigger1 DNA MER2_type -236 2182 1573 2152 108 0 17 chr6 38993192 38993488 -150286066 + AluSq SINE Alu 1 291 -22 10109 116 151 82 chr6 38993488 38993499 -150286055 - Tigger1 DNA MER2_type -845 1573 1564 799 197 0 0 chr6 38993499 38993621 -150285933 + FLAM_C SINE Alu 2 123 -20 10109 116 151 82 chr6 38993621 38994872 -150284682 - Tigger1 DNA MER2_type -854 1564 1 203 315 63 27 chr6 38995095 38995206 -150284348 + L2 LINE L2 3165 3279 -34 2268 109 10 0 chr6 38995216 38995520 -150284034 - AluSx SINE Alu -5 307 1 191 283 47 57 chr6 38995642 38995748 -150283806 - L2 LINE L2 -50 3222 3118 183 327 18 0 chr6 38996841 38996896 -150282658 - L3 LINE CR1 -4 1573 1518 189 200 25 0 chr6 38996906 38996946 -150282608 - MIR SINE MIR -136 126 86 388 254 29 58 chr6 38996951 38996997 -150282557 + MER94 DNA DNA 1 47 -87 2308 115 0 0 chr6 38996997 38997302 -150282252 + AluSx SINE Alu 1 305 -7 388 254 29 58 chr6 38997302 38997393 -150282161 + MER94 DNA DNA 47 134 0 243 221 140 39 chr6 38999828 38999932 -150279622 - MER5A DNA MER1_type -10 168 59 1919 113 38 34 chr6 38999932 39000223 -150279331 - AluSx SINE Alu -20 292 1 232 204 74 0 chr6 39001959 39002013 -150277541 - L2 LINE L2 0 3313 3256 211 327 151 15 chr6 39002169 39002374 -150277180 - L2 LINE L2 -367 2947 2715 535 287 127 68 chr6 39003587 39003940 -150275614 - MLT1H1 LTR MaLR 0 547 152 2033 116 10 7 chr6 39003940 39004232 -150275322 + AluSx SINE Alu 1 293 -19 535 287 127 68 chr6 39004232 39004352 -150275202 - MLT1H1 LTR MaLR -395 152 41 1878 140 46 83 chr6 39004393 39004742 -150274812 + MER1B DNA MER1_type 1 336 -1 286 216 62 52 chr6 39005940 39006037 -150273517 - L1MD3 LINE L1 -6 7989 7892 4287 163 27 60 chr6 39006044 39007114 -150272440 - L1MB4 LINE L1 -1 6179 5147 2578 53 7 0 chr6 39007641 39007942 -150271612 - AluY SINE Alu -8 303 1 265 351 79 16 chr6 39008020 39008464 -150271090 - L1ME LINE L1 -383 5779 5308 1765 178 86 14 chr6 39008496 39008844 -150270710 + MLT1A2 LTR MaLR 1 373 -1 207 0 0 0 chr6 39008860 39008883 -150270671 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 278 236 0 0 chr6 39008904 39008976 -150270578 - L1MB4 LINE L1 -1112 5034 4963 223 179 191 36 chr6 39009595 39009679 -150269875 + MIR SINE MIR 32 128 -80 462 293 60 5 chr6 39009841 39010056 -150269498 - L1MC4a LINE L1 -1875 5933 5707 2349 92 13 0 chr6 39010119 39010424 -150269130 + AluSp SINE Alu 1 309 -4 385 169 26 0 chr6 39010436 39010513 -150269041 + L1ME3A LINE L1 5862 5940 -230 248 367 33 43 chr6 39010851 39011061 -150268493 - L1MC4a LINE L1 -2152 5656 5449 186 43 0 0 chr6 39011068 39011091 -150268463 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr6 39012100 39012138 -150267416 + AT_rich Low_complexity Low_complexity 1 38 0 1686 167 14 11 chr6 39012156 39012432 -150267122 + AluJo SINE Alu 21 297 -15 955 176 15 60 chr6 39012532 39012731 -150266823 + MER20 DNA MER1_type 30 219 0 311 216 19 161 chr6 39012844 39013006 -150266548 + L2 LINE L2 3175 3313 0 271 395 6 17 chr6 39013100 39013277 -150266277 - MIR SINE MIR -79 183 9 2214 119 0 0 chr6 39013320 39013623 -150265931 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr6 39014363 39014384 -150265170 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 39015006 39015027 -150264527 + AT_rich Low_complexity Low_complexity 1 21 0 334 329 66 24 chr6 39016667 39016834 -150262720 + L2 LINE L2 2571 2744 -570 2071 196 16 13 chr6 39016839 39017198 -150262356 + L1 LINE L1 3888 4250 -1896 243 0 0 0 chr6 39017198 39017225 -150262329 + (CA)n Simple_repeat Simple_repeat 2 28 0 2071 196 16 13 chr6 39017225 39017315 -150262239 + L1 LINE L1 4250 4338 -1808 1943 188 46 73 chr6 39017770 39018248 -150261306 + MLT1D LTR MaLR 38 502 -3 1500 203 108 87 chr6 39018257 39018468 -150261086 + MLT1D LTR MaLR 3 208 -297 934 65 0 32 chr6 39018468 39018592 -150260962 - L1PA14 LINE L1 -4 6157 6038 1500 203 108 87 chr6 39018592 39018873 -150260681 + MLT1D LTR MaLR 208 505 0 1593 102 119 0 chr6 39020535 39020771 -150258783 - AluSc SINE Alu -15 294 31 207 0 0 0 chr6 39021392 39021415 -150258139 + (CA)n Simple_repeat Simple_repeat 1 23 0 291 396 77 35 chr6 39022153 39022529 -150257025 + L2 LINE L2 2572 2963 -351 21 0 0 0 chr6 39022546 39022567 -150256987 + AT_rich Low_complexity Low_complexity 1 21 0 273 366 20 13 chr6 39022679 39022832 -150256722 + L2 LINE L2 3159 3312 -1 21 36 0 0 chr6 39022907 39022935 -150256619 + AT_rich Low_complexity Low_complexity 1 28 0 219 211 19 19 chr6 39023085 39023137 -150256417 - MIR SINE MIR -74 134 83 406 259 37 0 chr6 39023137 39023218 -150256336 - AluJ/FLAM SINE Alu -223 89 6 381 93 0 0 chr6 39023340 39023394 -150256160 + (TG)n Simple_repeat Simple_repeat 1 54 0 2087 124 3 37 chr6 39024057 39024380 -150255174 + AluSx SINE Alu 1 312 0 6758 81 27 0 chr6 39024386 39025881 -150253673 + L1PA13 LINE L1 4630 6159 -4 355 269 57 51 chr6 39026160 39026335 -150253219 + MLT2E LTR ERVL 32 207 -421 2923 172 14 16 chr6 39026533 39027038 -150252516 - MLT1D LTR MaLR -1 504 1 2432 48 3 44 chr6 39027213 39027529 -150252025 - AluY SINE Alu -8 303 1 21 0 0 0 chr6 39028064 39028085 -150251469 + AT_rich Low_complexity Low_complexity 1 21 0 4666 191 21 22 chr6 39028263 39028992 -150250562 - L1MB7 LINE L1 -1 6183 5462 2587 152 114 46 chr6 39028992 39029511 -150250043 - LTR64 LTR ERVK -4 554 1 4666 191 21 22 chr6 39029511 39029934 -150249620 - L1MB7 LINE L1 -722 5462 5040 461 129 0 24 chr6 39029934 39030019 -150249535 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1970 161 0 7 chr6 39030021 39030326 -150249228 - AluJb SINE Alu -9 303 1 377 194 19 2 chr6 39030326 39030425 -150249129 - L1MB7 LINE L1 -1096 5050 4943 * 716 224 50 14 chr6 39030421 39030640 -150248914 - L1MB7 LINE L1 -1780 4366 4140 447 259 17 157 chr6 39033651 39033789 -150245765 - MIR SINE MIR 0 262 106 2123 113 3 0 chr6 39033789 39034072 -150245482 + AluSq SINE Alu 1 284 -29 765 61 0 0 chr6 39034072 39034171 -150245383 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 447 259 17 157 chr6 39034171 39034324 -150245230 - MIR SINE MIR -154 108 11 219 158 18 35 chr6 39034982 39035039 -150244515 + T-rich Low_complexity Low_complexity 3 58 0 226 282 54 95 chr6 39035302 39035596 -150243958 - L1MEd LINE L1 -5350 769 488 442 316 51 52 chr6 39035992 39036617 -150242937 - MERVL LTR ERVL -1550 3935 3282 669 58 0 0 chr6 39036676 39036762 -150242792 + (CA)n Simple_repeat Simple_repeat 1 86 0 11688 203 32 11 chr6 39037476 39039952 -150239602 - L1PA15-16 LINE L1 -831 6018 3484 2067 138 3 3 chr6 39039952 39040249 -150239305 - AluSx SINE Alu -15 297 1 11688 203 32 11 chr6 39040249 39040383 -150239171 - L1PA15-16 LINE L1 -3365 3484 3354 1267 206 14 1 chr6 39040377 39040692 -150238862 - L1PA15-16 LINE L1 -3821 3028 2710 * 210 348 54 0 chr6 39041366 39041478 -150238076 - MIR SINE MIR -110 152 35 192 40 0 0 chr6 39043647 39043672 -150235882 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2128 102 14 0 chr6 39043674 39043958 -150235596 - AluSq SINE Alu -25 288 1 306 350 43 7 chr6 39044227 39044367 -150235187 - MER5A DNA MER1_type 0 189 45 205 306 83 58 chr6 39044264 39044385 -150235169 + MER5A DNA MER1_type 51 174 -15 * 251 192 51 51 chr6 39044471 39044549 -150235005 - MER5A DNA MER1_type -103 86 9 240 319 152 1 chr6 39046782 39046927 -150232627 - MIR SINE MIR -57 205 41 2242 91 14 0 chr6 39047601 39047897 -150231657 - AluSc SINE Alu -9 300 1 2089 128 10 3 chr6 39047901 39048198 -150231356 - AluSx SINE Alu -13 299 1 209 386 73 39 chr6 39048456 39048715 -150230839 - L2 LINE L2 -494 2820 2553 2263 93 17 0 chr6 39049397 39049697 -150229857 + AluSc SINE Alu 1 305 -4 1806 156 3 37 chr6 39049753 39050074 -150229480 + AluSx SINE Alu 1 310 -2 380 283 20 0 chr6 39050816 39050915 -150228639 + MIR SINE MIR 45 145 -63 2276 183 42 11 chr6 39051984 39052432 -150227122 + MLT1C LTR MaLR 6 467 0 2206 223 95 13 chr6 39052653 39053177 -150226377 + MLT1F1 LTR MaLR 1 567 0 201 282 26 39 chr6 39053510 39053588 -150225966 - L2 LINE L2 0 3272 3196 475 190 100 10 chr6 39053667 39053767 -150225787 - MER45A DNA AcHobo 0 178 70 647 218 52 15 chr6 39053888 39054140 -150225414 + LTR16C LTR ERVL 167 491 0 239 327 107 33 chr6 39054290 39054440 -150225114 - L2 LINE L2 -528 2786 2626 775 205 24 12 chr6 39055000 39055166 -150224388 - MER5B DNA MER1_type 0 178 11 780 235 101 0 chr6 39055269 39055448 -150224106 - MLT1J LTR MaLR -313 198 2 204 289 79 0 chr6 39056149 39056225 -150223329 - MIR SINE MIR -107 155 74 2284 126 95 18 chr6 39057230 39057618 -150221936 - MSTA LTR MaLR -7 421 4 859 146 0 44 chr6 39057642 39057779 -150221775 + FLAM_C SINE Alu 3 133 0 1039 216 69 10 chr6 39057801 39058111 -150221443 + MSTC-int LTR MaLR 1227 1580 0 1812 133 200 3 chr6 39058111 39058426 -150221128 + MSTC LTR MaLR 1 377 -51 381 235 108 13 chr6 39058427 39058666 -150220888 + L1MC4a LINE L1 5265 5550 -626 1225 150 275 0 chr6 39058676 39058956 -150220598 - LTR29 LTR ERV1 -262 360 4 1071 139 8 105 chr6 39058992 39059226 -150220328 + Charlie5 DNA MER1_type 2345 2551 -34 1984 128 7 20 chr6 39059226 39059523 -150220031 - AluSx SINE Alu -19 293 1 1071 139 8 105 chr6 39059523 39059555 -150219999 + Charlie5 DNA MER1_type 2551 2585 0 23 0 0 0 chr6 39059589 39059612 -150219942 + AT_rich Low_complexity Low_complexity 1 23 0 428 259 170 30 chr6 39059785 39060186 -150219368 + L1MC/D LINE L1 5304 5760 -2048 3866 175 28 49 chr6 39060340 39061089 -150218465 - MER44D DNA MER2_type 0 605 1 1420 211 83 52 chr6 39061153 39061506 -150218048 + MER84 LTR ERVI 14 387 -120 4655 101 79 8 chr6 39061506 39061786 -150217768 - LTR8 LTR ERV1 0 691 432 1774 104 7 62 chr6 39061786 39062075 -150217479 + AluSq SINE Alu 35 307 -6 4655 101 79 8 chr6 39062075 39062439 -150217115 - LTR8 LTR ERV1 -259 432 1 1420 211 83 52 chr6 39062439 39062564 -150216990 + MER84 LTR ERVI 387 507 0 513 299 85 14 chr6 39062564 39062918 -150216636 + L1MC4a LINE L1 5562 5940 -1868 29 47 0 0 chr6 39063109 39063152 -150216402 + AT_rich Low_complexity Low_complexity 1 43 0 1026 244 122 35 chr6 39063478 39063673 -150215881 + MER58B DNA MER1_type 3 236 -2184 2122 84 0 42 chr6 39063673 39063983 -150215571 - AluSx SINE Alu -15 297 1 1026 244 122 35 chr6 39063983 39064099 -150215455 + MER58B DNA MER1_type 236 341 0 285 343 25 65 chr6 39065143 39065420 -150214134 - L2 LINE L2 -2 3270 3005 303 310 50 93 chr6 39065761 39066222 -150213332 + L1M2 LINE L1 737 1177 -5672 1136 292 76 11 chr6 39066700 39067172 -150212382 - L2 LINE L2 -684 2630 2128 204 359 85 0 chr6 39067292 39067398 -150212156 - MER5A DNA MER1_type -63 126 12 241 335 81 19 chr6 39067420 39067581 -150211973 + MER5A DNA MER1_type 19 189 0 207 0 0 0 chr6 39067657 39067680 -150211874 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2815 69 3 0 chr6 39067965 39068312 -150211242 - THE1A LTR MaLR -5 350 3 553 289 50 100 chr6 39068319 39068780 -150210774 - LTR67 LTR ERVL -115 442 5 25 0 0 0 chr6 39069060 39069085 -150210469 + AT_rich Low_complexity Low_complexity 1 25 0 464 245 0 20 chr6 39069320 39069418 -150210136 - MER5C DNA MER1_type -228 96 1 235 244 67 44 chr6 39069494 39069584 -150209970 + L1MEd LINE L1 6 97 -6022 415 341 52 25 chr6 39069922 39070286 -150209268 + L1MEd LINE L1 464 837 -5282 2020 130 3 0 chr6 39070293 39070624 -150208930 + AluSp SINE Alu 1 332 0 2923 254 65 49 chr6 39070768 39071459 -150208095 + L1MEc LINE L1 36 752 -5644 2224 85 21 0 chr6 39071459 39071740 -150207814 + AluSp SINE Alu 1 287 -26 2923 254 65 49 chr6 39071740 39072127 -150207427 + L1MEc LINE L1 752 1131 -5265 324 180 0 15 chr6 39072127 39072200 -150207354 + Alu SINE Alu 1 47 -255 6942 176 28 6 chr6 39072200 39074152 -150205402 + L1MA9 LINE L1 3974 5969 -343 732 266 108 31 chr6 39074197 39074483 -150205071 + MER57A LTR ERV1 84 391 -12 216 0 0 0 chr6 39074490 39074514 -150205040 + (T)n Simple_repeat Simple_repeat 1 24 0 497 170 30 0 chr6 39074517 39074617 -150204937 + L1MA9 LINE L1 5974 6076 -236 311 106 0 0 chr6 39074617 39074664 -150204890 + MER4A LTR ERV1 1 47 -617 1307 97 29 14 chr6 39074692 39074899 -150204655 + L1MA9 LINE L1 6103 6312 0 1642 241 50 8 chr6 39074899 39075423 -150204131 + L1MB8 LINE L1 4406 4951 -1195 * 2675 154 32 56 chr6 39075396 39075897 -150203657 + L1MA9 LINE L1 5283 5771 -541 995 197 53 35 chr6 39075902 39076215 -150203339 - MSTD LTR MaLR 0 396 39 973 98 0 0 chr6 39076217 39076339 -150203215 + FLAM_C SINE Alu 1 122 -21 331 49 0 0 chr6 39076383 39076424 -150203130 - MSTD LTR MaLR -387 41 1 1568 165 72 18 chr6 39076437 39076828 -150202726 + L1MA9 LINE L1 5781 6290 -22 4069 203 35 26 chr6 39076862 39078119 -150201435 + L1MB8 LINE L1 4906 6172 -6 1635 310 60 32 chr6 39078126 39079518 -150200036 + HERV16 LTR ERVL 1079 2592 -2623 28 29 0 0 chr6 39079526 39079561 -150199993 + AT_rich Low_complexity Low_complexity 1 35 0 15830 138 30 34 chr6 39079564 39080178 -150199376 - L1MA1 LINE L1 0 7721 7106 1720 167 11 11 chr6 39080178 39080465 -150199089 - AluJb SINE Alu -19 293 7 15830 138 30 34 chr6 39080465 39080784 -150198770 - L1MA1 LINE L1 -615 7106 6787 1596 166 63 27 chr6 39080784 39081085 -150198469 - AluJb SINE Alu 0 312 1 15830 138 30 34 chr6 39081085 39081103 -150198451 - L1MA1 LINE L1 -934 6787 6770 2432 99 0 0 chr6 39081103 39081415 -150198139 - AluSx SINE Alu 0 312 1 15830 138 30 34 chr6 39081415 39081823 -150197731 - L1MA1 LINE L1 -951 6770 6362 2164 120 0 13 chr6 39081823 39082123 -150197431 - AluSc SINE Alu -13 296 1 15830 138 30 34 chr6 39082123 39083328 -150196226 - L1MA1 LINE L1 -1359 6362 5154 2200 107 10 0 chr6 39083328 39083617 -150195937 - AluSx SINE Alu -20 292 1 15830 138 30 34 chr6 39083617 39084957 -150194597 - L1MA1 LINE L1 -2567 5154 3811 2655 123 80 8 chr6 39084957 39085356 -150194198 - MSTA LTR MaLR 0 428 1 10328 154 22 9 chr6 39085356 39086985 -150192569 - MSTA-int LTR MaLR 0 1651 1 2365 173 36 10 chr6 39086985 39087402 -150192152 - MSTA LTR MaLR 0 428 1 15830 138 30 34 chr6 39087402 39088745 -150190809 - L1MA1 LINE L1 -3907 3814 2419 2241 105 9 16 chr6 39088751 39089066 -150190488 - AluSp SINE Alu 0 313 1 7142 158 39 3 chr6 39089066 39090753 -150188801 - L1P4 LINE L1 -436 5725 3971 249 213 0 0 chr6 39091845 39091892 -150187662 + L2 LINE L2 3138 3184 -88 180 263 70 88 chr6 39092117 39092231 -150187323 + L2 LINE L2 2943 3054 -218 540 231 0 0 chr6 39092539 39092647 -150186907 - MLT2D LTR ERVL -69 345 238 208 191 21 0 chr6 39095126 39095173 -150184381 + A-rich Low_complexity Low_complexity 2 49 0 233 254 95 56 chr6 39095173 39095299 -150184255 - MIR SINE MIR -56 206 76 615 285 142 11 chr6 39095358 39095625 -150183929 - L3 LINE CR1 -25 1552 1251 275 227 30 15 chr6 39095662 39095728 -150183826 - L1ME LINE L1 -6001 69 3 249 277 101 26 chr6 39095751 39095946 -150183608 - L2 LINE L2 0 3272 2979 706 237 88 40 chr6 39095979 39096207 -150183347 + MIR SINE MIR 14 252 -10 2223 119 0 0 chr6 39097334 39097629 -150181925 + AluSx SINE Alu 3 297 -15 582 301 85 19 chr6 39098142 39098401 -150181153 - MLT1I LTR MaLR -13 396 121 215 255 199 41 chr6 39098799 39098995 -150180559 - MIR SINE MIR -15 247 21 1452 219 7 4 chr6 39099154 39099433 -150180121 - AluJo SINE Alu -32 280 1 11906 182 49 12 chr6 39099465 39099853 -150179701 - L1PA15 LINE L1 0 6868 6496 2188 98 27 10 chr6 39099853 39100149 -150179405 - AluSg SINE Alu -7 303 3 11906 182 49 12 chr6 39100149 39103028 -150176526 - L1PA15 LINE L1 -372 6496 3482 2045 141 3 3 chr6 39103028 39103325 -150176229 - AluSx SINE Alu -15 297 1 11906 182 49 12 chr6 39103325 39103459 -150176095 - L1PA15 LINE L1 -3386 3482 3354 1267 206 14 1 chr6 39103453 39103768 -150175786 - L1PA15 LINE L1 -3821 3028 2710 * 1313 269 47 62 chr6 39104512 39105176 -150174378 - L1ME3 LINE L1 -212 5950 5277 3051 138 22 16 chr6 39105176 39105670 -150173884 - LOR1a LTR ERV1 0 497 1 1313 269 47 62 chr6 39105670 39105943 -150173611 - L1ME3 LINE L1 -885 5277 5027 1949 172 22 11 chr6 39105943 39106304 -150173250 + MLT1A1 LTR MaLR 1 365 0 1313 269 47 62 chr6 39106304 39106470 -150173084 - L1ME3 LINE L1 -1135 5027 4860 1506 241 77 65 chr6 39106484 39106647 -150172907 - L2 LINE L2 0 3313 3153 2245 97 0 7 chr6 39106647 39106937 -150172617 + AluSc SINE Alu 3 290 -19 1506 241 77 65 chr6 39106937 39107772 -150171782 - L2 LINE L2 -160 3153 2305 475 211 11 0 chr6 39108158 39108248 -150171306 + MER81 DNA DNA 24 114 0 2993 138 74 25 chr6 39108350 39108543 -150171011 - MER41C LTR ERV1 0 554 372 227 53 0 26 chr6 39108543 39108581 -150170973 + (TA)n Simple_repeat Simple_repeat 1 37 0 2993 138 74 25 chr6 39108581 39108765 -150170789 - MER41C LTR ERV1 -182 372 199 2073 128 14 0 chr6 39108765 39109055 -150170499 - AluSg SINE Alu -16 294 1 2993 138 74 25 chr6 39109055 39109204 -150170350 - MER41C LTR ERV1 -355 199 1 522 153 29 18 chr6 39109408 39109526 -150170028 - MLT1E2 LTR MaLR 0 626 431 517 260 121 55 chr6 39109574 39109847 -150169707 - LTR43 LTR ERV1 -125 477 187 1229 246 77 30 chr6 39110199 39110704 -150168850 - MLT1E2 LTR MaLR -69 497 1 405 260 39 0 chr6 39110715 39110819 -150168735 - L2 LINE L2 -19 3294 3187 272 122 20 0 chr6 39110875 39110924 -150168630 - L1MA10 LINE L1 -7 6327 6278 3238 120 0 2 chr6 39111161 39111619 -150167935 - L1PA15 LINE L1 0 6165 5709 432 227 0 27 chr6 39111619 39111631 -150167923 - L1MA9 LINE L1 -36 6276 6265 1659 231 12 10 chr6 39111631 39112030 -150167524 - L1ME1 LINE L1 -44 6122 5723 2154 201 26 44 chr6 39112201 39112659 -150166895 + MLT1D LTR MaLR 1 450 -55 35 24 0 0 chr6 39112659 39112701 -150166853 + AT_rich Low_complexity Low_complexity 1 42 0 333 157 57 0 chr6 39112701 39112771 -150166783 + MLT1D LTR MaLR 431 504 -1 544 268 125 51 chr6 39113745 39114081 -150165473 + MLT1J1 LTR MaLR 60 420 -26 2247 101 7 0 chr6 39114388 39114684 -150164870 - AluSq SINE Alu -15 298 1 418 301 107 31 chr6 39114688 39115373 -150164181 + L1MC4a LINE L1 4612 5348 -798 1603 278 44 19 chr6 39115427 39116018 -150163536 + L1MC4a LINE L1 5333 5938 -1870 2243 109 0 6 chr6 39116940 39117252 -150162302 - AluY SINE Alu -1 310 1 2249 80 0 11 chr6 39117255 39117541 -150162013 - AluSc SINE Alu -16 293 11 803 219 81 12 chr6 39117702 39117948 -150161606 - L1M4 LINE L1 -1436 4710 4448 2648 148 22 9 chr6 39117964 39118411 -150161143 - L1MA6 LINE L1 -287 6013 5561 298 264 149 0 chr6 39118594 39118715 -150160839 - MER112 DNA MER1_type -9 251 113 201 39 0 0 chr6 39118729 39118755 -150160799 + (TG)n Simple_repeat Simple_repeat 1 26 0 2511 53 3 0 chr6 39118899 39119201 -150160353 - AluY SINE Alu -8 303 1 2339 78 0 0 chr6 39119422 39119716 -150159838 + AluY SINE Alu 1 294 -17 4002 158 82 24 chr6 39120509 39121345 -150158209 - L1MA10 LINE L1 -1 6333 5449 2461 93 0 0 chr6 39121586 39121896 -150157658 + AluY SINE Alu 1 310 -1 717 125 71 0 chr6 39121981 39122093 -150157461 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr6 39122093 39122126 -150157428 + AT_rich Low_complexity Low_complexity 1 33 0 616 223 0 15 chr6 39122178 39122308 -150157246 - FLAM_A SINE Alu -2 131 4 28 29 0 0 chr6 39122314 39122349 -150157205 + AT_rich Low_complexity Low_complexity 1 35 0 2431 102 0 3 chr6 39122647 39122960 -150156594 - AluSq SINE Alu -1 312 1 1204 136 0 0 chr6 39123938 39124114 -150155440 - AluSg/x SINE Alu -3 309 134 2347 87 0 3 chr6 39124531 39124831 -150154723 + AluY SINE Alu 1 299 -12 2278 115 0 6 chr6 39124836 39125186 -150154368 + AluSg SINE Alu 1 348 0 516 231 54 21 chr6 39126182 39126368 -150153186 - L1M4 LINE L1 -3768 2378 2187 2234 104 0 13 chr6 39126525 39126824 -150152730 - AluSg SINE Alu -15 295 1 586 202 0 25 chr6 39126829 39126991 -150152563 - FLAM_A SINE Alu 0 159 1 385 325 77 41 chr6 39127063 39127517 -150152037 - L1M4 LINE L1 -3157 2989 2514 2396 85 10 0 chr6 39127517 39127811 -150151743 - AluSg SINE Alu -13 297 1 385 325 77 41 chr6 39127811 39127864 -150151690 - L1M4 LINE L1 -3632 2514 2464 1399 208 19 7 chr6 39127952 39128221 -150151333 - AluJo SINE Alu -40 272 1 33 73 0 0 chr6 39128362 39128430 -150151124 + AT_rich Low_complexity Low_complexity 1 68 0 1178 224 40 77 chr6 39128430 39128603 -150150951 - L1MA9 LINE L1 -42 6270 6092 1951 129 33 10 chr6 39128603 39128905 -150150649 - AluJb SINE Alu -3 309 1 1178 224 40 77 chr6 39128905 39129132 -150150422 - L1MA9 LINE L1 -220 6092 5885 796 71 0 0 chr6 39129201 39129299 -150150255 + L1PA5 LINE L1 1 98 -6048 * 37938 38 28 2 chr6 39129287 39134687 -150144867 + L1PA5 LINE L1 611 6146 -8 1966 199 8 0 chr6 39134750 39135106 -150144448 + MLT1A1 LTR MaLR 7 365 0 1771 251 82 14 chr6 39135115 39135872 -150143682 + L1ME1 LINE L1 2840 3647 -2499 * 8295 105 4 6 chr6 39135871 39137012 -150142542 - THE1A-int LTR MaLR -441 1139 1 2408 99 8 33 chr6 39137012 39137376 -150142178 - THE1A LTR MaLR 0 355 1 1194 296 35 14 chr6 39137376 39137892 -150141662 + L1ME1 LINE L1 3644 4170 -1976 775 181 8 8 chr6 39137903 39138036 -150141518 + AluJo SINE Alu 3 135 -177 253 214 95 8 chr6 39138040 39138166 -150141388 + L1ME1 LINE L1 4156 4292 -1854 2170 274 19 36 chr6 39138202 39139005 -150140549 + L1ME1 LINE L1 5378 6166 0 245 352 28 21 chr6 39139018 39139163 -150140391 + L1M4c LINE L1 1650 1795 -4589 497 313 55 13 chr6 39139209 39139592 -150139962 + L1M4c LINE L1 2010 2408 -4155 23 33 0 0 chr6 39141066 39141096 -150138458 + GC_rich Low_complexity Low_complexity 1 30 0 180 125 0 0 chr6 39145113 39145145 -150134409 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1432 299 89 28 chr6 39145295 39146411 -150133143 - L2 LINE L2 -4 3309 2128 222 289 70 18 chr6 39146672 39146786 -150132768 - MER5A DNA MER1_type -22 167 48 191 320 75 20 chr6 39146673 39146820 -150132734 + MER5A DNA MER1_type 35 189 0 * 207 0 0 0 chr6 39146896 39146919 -150132635 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2823 69 3 0 chr6 39147204 39147551 -150132003 - THE1A LTR MaLR -5 350 3 554 284 52 102 chr6 39147558 39148019 -150131535 - LTR67 LTR ERVL -115 442 5 25 0 0 0 chr6 39148299 39148324 -150131230 + AT_rich Low_complexity Low_complexity 1 25 0 436 245 0 20 chr6 39148559 39148657 -150130897 - MER5C DNA MER1_type -228 96 1 389 341 52 25 chr6 39149161 39149525 -150130029 + L1MEd LINE L1 464 837 -5282 204 125 0 0 chr6 39150459 39150491 -150129063 + (TCC)n Simple_repeat Simple_repeat 2 33 0 315 164 0 0 chr6 39150553 39150614 -150128940 + CT-rich Low_complexity Low_complexity 2 62 0 2450 83 3 0 chr6 39151898 39152198 -150127356 + AluY SINE Alu 1 301 -10 2626 30 7 3 chr6 39152198 39152500 -150127054 + AluY SINE Alu 1 303 -8 323 148 102 45 chr6 39152932 39153020 -150126534 + MER91C DNA MER1_type 35 127 -13 307 211 11 95 chr6 39154374 39154469 -150125085 - L2 LINE L2 -64 3249 3163 234 340 64 13 chr6 39154563 39154719 -150124835 - L2 LINE L2 -433 2881 2718 1192 282 49 27 chr6 39154735 39155186 -150124368 + MLT1J LTR MaLR 1 461 -50 403 311 37 21 chr6 39155217 39155407 -150124147 - L2 LINE L2 -620 2694 2502 435 255 35 87 chr6 39155586 39155817 -150123737 - L2 LINE L2 -1 3312 3094 184 292 42 0 chr6 39156096 39156168 -150123386 - L2 LINE L2 -1507 1807 1733 858 156 0 15 chr6 39156792 39156927 -150122627 - FLAM_C SINE Alu -5 138 6 3080 146 14 70 chr6 39157098 39157434 -150122120 - L1 LINE L1 -1189 4957 4604 2277 93 7 0 chr6 39157434 39157734 -150121820 - AluSg SINE Alu -8 302 1 3080 146 14 70 chr6 39157734 39158256 -150121298 - L1 LINE L1 -1542 4604 4224 1733 149 10 5 chr6 39158251 39158827 -150120727 + L1MA5 LINE L1 5553 6253 -47 * 1616 103 5 0 chr6 39158828 39159052 -150120502 + AluSx SINE Alu 1 225 -87 816 103 0 0 chr6 39159052 39159169 -150120385 + AluSg/x SINE Alu 185 301 -11 201 191 95 0 chr6 39159389 39159431 -150120123 - MER91A DNA MER1_type -27 169 124 413 294 119 17 chr6 39159636 39159813 -150119741 + MIR3 SINE MIR 1 195 -13 284 219 179 3 chr6 39160644 39160754 -150118800 - MIR SINE MIR -62 146 30 186 194 0 0 chr6 39161352 39161383 -150118171 + L2 LINE L2 3025 3055 -217 1818 157 56 15 chr6 39161834 39162158 -150117396 + MER2 DNA MER2_type 1 337 -8 209 285 236 8 chr6 39162439 39162562 -150116992 - MIR3 SINE MIR -29 179 29 395 198 58 12 chr6 39163528 39163614 -150115940 - MIR3 SINE MIR -11 197 108 212 272 235 0 chr6 39163634 39163715 -150115839 - MER91B DNA MER1_type 0 190 91 301 328 8 42 chr6 39163742 39163861 -150115693 - MER91B DNA MER1_type -75 115 1 2474 68 0 0 chr6 39163882 39164190 -150115364 - AluY SINE Alu -3 308 1 1408 185 3 48 chr6 39164256 39164569 -150114985 + AluJb SINE Alu 13 311 -1 425 300 50 6 chr6 39164961 39165121 -150114433 + MIR SINE MIR 67 233 -29 2135 105 0 16 chr6 39165818 39166123 -150113431 + AluSc SINE Alu 1 300 -9 189 321 38 0 chr6 39166126 39166179 -150113375 - MIR3 SINE MIR -40 168 114 718 260 96 29 chr6 39166582 39166972 -150112582 + L1MC5 LINE L1 7127 7498 -544 560 239 70 111 chr6 39167022 39167297 -150112257 + L1MC4 LINE L1 7492 7777 -265 1617 176 17 3 chr6 39167297 39167593 -150111961 - AluJb SINE Alu -7 305 6 560 239 70 111 chr6 39167593 39167655 -150111899 + L1MC4 LINE L1 7777 7812 -230 2151 81 3 3 chr6 39167655 39167970 -150111584 - AluSq SINE Alu 0 315 1 560 239 70 111 chr6 39167970 39168044 -150111510 + L1MC4 LINE L1 7812 7888 -154 435 150 75 0 chr6 39168044 39168124 -150111430 - AluS SINE Alu -7 305 220 243 283 0 0 chr6 39168238 39168291 -150111263 + L2 LINE L2 3261 3313 0 345 216 74 117 chr6 39168383 39168545 -150111009 - MIR3 SINE MIR -49 159 5 219 216 8 136 chr6 39169037 39169162 -150110392 - MIR3 SINE MIR -17 191 83 2194 94 3 3 chr6 39169214 39169521 -150110033 + AluSp SINE Alu 1 307 -6 1395 176 11 26 chr6 39169810 39170077 -150109477 + AluJo SINE Alu 1 263 -49 411 298 83 36 chr6 39170917 39171085 -150108469 + MER5B DNA MER1_type 2 177 -1 231 308 28 56 chr6 39171089 39171232 -150108322 - MIR3 SINE MIR -60 148 10 276 293 160 9 chr6 39171297 39171509 -150108045 - L2 LINE L2 -345 2969 2726 411 234 126 0 chr6 39171520 39171631 -150107923 - L2 LINE L2 0 3313 3189 558 294 81 71 chr6 39171927 39172444 -150107110 + L2 LINE L2 2808 3310 -3 201 74 0 0 chr6 39172761 39172788 -150106766 + (T)n Simple_repeat Simple_repeat 1 27 0 468 201 189 12 chr6 39172811 39172975 -150106579 - L1ME3A LINE L1 -295 5875 5683 389 297 34 2 chr6 39172984 39173150 -150106404 - L1ME3A LINE L1 -544 5620 5450 423 0 0 0 chr6 39173161 39173208 -150106346 + (TG)n Simple_repeat Simple_repeat 2 48 0 375 246 123 0 chr6 39173476 39173598 -150105956 + MER104 DNA Tc2 6 142 -38 799 196 7 7 chr6 39173612 39173760 -150105794 + MSTD LTR MaLR 1 148 -248 601 135 0 0 chr6 39173767 39173856 -150105698 + MSTD LTR MaLR 308 396 0 653 211 8 8 chr6 39173975 39174136 -150105418 + FLAM_A SINE Alu 1 161 0 2317 64 0 3 chr6 39174181 39174477 -150105077 + AluSc SINE Alu 1 295 -14 958 133 122 89 chr6 39174804 39175074 -150104480 - Tigger7 DNA MER2_type 0 2587 2309 888 201 7 0 chr6 39175080 39175234 -150104320 - Tigger7 DNA MER2_type -569 164 10 297 257 239 0 chr6 39175255 39175364 -150104190 + L2 LINE L2 3136 3270 -2 3067 124 154 109 chr6 39175955 39176170 -150103384 + L1MC3 LINE L1 6879 7083 -702 309 264 23 11 chr6 39176170 39176257 -150103297 + MLT1F1 LTR MaLR 35 122 -445 3067 124 154 109 chr6 39176257 39176816 -150102738 + L1MC3 LINE L1 7083 7778 -7 201 94 62 0 chr6 39177178 39177210 -150102344 + GA-rich Low_complexity Low_complexity 4 37 0 2491 46 0 0 chr6 39179163 39179465 -150100089 + AluSc SINE Alu 2 303 -6 264 310 110 33 chr6 39179546 39179960 -150099594 + L2 LINE L2 2713 3232 -81 914 44 0 11 chr6 39180045 39180225 -150099329 - L1PA4 LINE L1 -3 6152 5929 505 251 109 6 chr6 39180531 39180701 -150098853 + MIR SINE MIR 30 221 -41 1316 209 177 62 chr6 39180864 39181415 -150098139 + MER39 LTR ERV1 6 705 -2 239 0 32 0 chr6 39181500 39181531 -150098023 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1975 132 10 0 chr6 39182016 39182311 -150097243 - AluJo SINE Alu -14 298 1 304 285 197 18 chr6 39182312 39182652 -150096902 + LTR37B LTR ERV1 68 468 0 426 220 75 38 chr6 39182652 39182838 -150096716 - L1MC5 LINE L1 -415 7546 7354 2113 100 7 3 chr6 39183051 39183351 -150096203 - AluSx SINE Alu -11 301 1 293 313 82 15 chr6 39183360 39183494 -150096060 - L1MC4a LINE L1 -414 7394 7252 1102 216 259 5 chr6 39183502 39183872 -150095682 + LTR41 LTR ERVL 1 464 -309 405 191 44 175 chr6 39183917 39184093 -150095461 + L2 LINE L2 1560 1695 -1619 2012 84 12 59 chr6 39184093 39184415 -150095139 - AluSq SINE Alu -6 307 1 405 191 44 175 chr6 39184415 39184489 -150095065 + L2 LINE L2 1695 1777 -1537 2311 72 3 0 chr6 39184499 39184792 -150094762 + L1PA7 LINE L1 5846 6139 -15 448 286 66 121 chr6 39184807 39185078 -150094476 - L2 LINE L2 -825 2489 2205 858 145 0 0 chr6 39185078 39185202 -150094352 + AluJo SINE Alu 4 127 -175 448 286 66 121 chr6 39185202 39185258 -150094296 - L2 LINE L2 -1109 2205 2148 982 177 0 0 chr6 39185258 39185422 -150094132 + AluJo SINE Alu 137 300 -2 448 286 66 121 chr6 39185422 39185681 -150093873 - L2 LINE L2 -1166 2148 1934 527 314 171 14 chr6 39185690 39186129 -150093425 - L2 LINE L2 -1776 1538 1031 503 303 116 45 chr6 39186736 39187158 -150092396 - L1 LINE L1 -1126 5020 4569 186 43 0 0 chr6 39187501 39187524 -150092030 + (T)n Simple_repeat Simple_repeat 1 23 0 185 287 143 43 chr6 39188082 39188312 -150091242 - L2 LINE L2 -343 2971 2719 2158 64 3 3 chr6 39190480 39190786 -150088768 - AluY SINE Alu 0 306 1 1517 221 107 43 chr6 39192343 39192801 -150086753 + MLT1E LTR MaLR 1 536 -57 2120 113 0 7 chr6 39192801 39193111 -150086443 - AluSx SINE Alu -4 308 1 1517 221 107 43 chr6 39193111 39193173 -150086381 + MLT1E LTR MaLR 536 593 0 292 247 155 10 chr6 39193208 39193305 -150086249 + L2 LINE L2 3162 3272 0 646 315 81 8 chr6 39193471 39193706 -150085848 + MIR SINE MIR 10 261 -1 2786 44 0 6 chr6 39193744 39194084 -150085470 - L1PA5 LINE L1 -5 6149 5812 22 0 0 0 chr6 39194136 39194158 -150085396 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 154 28 chr6 39194274 39194488 -150085066 - L2 LINE L2 -181 3091 2851 866 284 72 0 chr6 39195279 39195515 -150084039 + MIR SINE MIR 9 261 -1 22 80 0 0 chr6 39196086 39196136 -150083418 + AT_rich Low_complexity Low_complexity 1 50 0 247 313 84 99 chr6 39197297 39197629 -150081925 + L2 LINE L2 2943 3269 -3 501 269 31 31 chr6 39197655 39197785 -150081769 - MIR3 SINE MIR -77 131 2 207 225 59 34 chr6 39198689 39198794 -150080760 + MER5A DNA MER1_type 26 183 -6 228 186 29 14 chr6 39199611 39199681 -150079873 + (TA)n Simple_repeat Simple_repeat 1 71 0 591 161 201 20 chr6 39199965 39200114 -150079440 - MER5A DNA MER1_type 0 189 14 317 304 134 0 chr6 39200107 39200219 -150079335 + L2 LINE L2 3145 3271 -1 * 288 292 83 47 chr6 39200816 39200991 -150078563 - MIR SINE MIR -56 206 23 1182 156 0 50 chr6 39201549 39201787 -150077767 - AluJo SINE Alu 0 312 87 266 299 197 7 chr6 39201859 39202006 -150077548 - MIR3 SINE MIR -4 204 30 193 282 26 64 chr6 39202204 39202282 -150077272 - MIR SINE MIR -78 184 110 538 299 117 5 chr6 39202945 39203142 -150076412 - MIR SINE MIR -16 246 28 218 312 11 0 chr6 39204087 39204180 -150075374 + (CA)n Simple_repeat Simple_repeat 2 95 0 221 280 0 0 chr6 39204260 39204310 -150075244 - L2 LINE L2 0 3313 3264 399 300 64 0 chr6 39205654 39205794 -150073760 - MIR SINE MIR -41 221 73 1296 164 17 116 chr6 39205840 39206067 -150073487 - MER33 DNA MER1_type -2261 324 143 2296 60 23 3 chr6 39206067 39206369 -150073185 + AluY SINE Alu 1 308 -3 1296 164 17 116 chr6 39206369 39206494 -150073060 - MER33 DNA MER1_type -2442 143 7 357 288 76 33 chr6 39206704 39206888 -150072666 + MIR SINE MIR 20 211 -51 315 0 0 0 chr6 39206998 39207033 -150072521 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr6 39207596 39207627 -150071927 + (TC)n Simple_repeat Simple_repeat 1 31 0 460 323 103 36 chr6 39208609 39209104 -150070450 + L2 LINE L2 2450 2977 -337 7239 57 6 6 chr6 39209161 39210877 -150068677 - L1PA7 LINE L1 0 6154 4435 251 310 107 83 chr6 39210897 39211187 -150068367 + L2 LINE L2 2968 3264 -8 327 285 133 53 chr6 39211522 39211673 -150067881 - MIR3 SINE MIR -43 165 3 569 304 149 5 chr6 39212761 39212962 -150066592 + MIR SINE MIR 32 261 -1 348 274 140 43 chr6 39213994 39214158 -150065396 - MIR3 SINE MIR -14 194 15 944 236 41 24 chr6 39215118 39215364 -150064190 + MIR SINE MIR 2 251 -11 579 205 180 31 chr6 39215556 39215717 -150063837 - MER5A DNA MER1_type -1 188 4 2000 138 0 0 chr6 39217477 39217775 -150061779 + AluSx SINE Alu 6 303 -9 1617 126 119 0 chr6 39217777 39218054 -150061500 + AluSx SINE Alu 1 310 -2 267 31 0 0 chr6 39218319 39218351 -150061203 + (TAG)n Simple_repeat Simple_repeat 1 32 0 307 284 53 64 chr6 39218630 39218824 -150060730 - MIR SINE MIR -41 221 32 5444 101 2 23 chr6 39219842 39220636 -150058918 - L1PA11 LINE L1 0 6174 5397 11332 195 39 27 chr6 39220715 39222440 -150057114 - L1 LINE L1 -1439 5409 3705 2130 112 0 7 chr6 39222440 39222745 -150056809 - AluSq SINE Alu -10 303 1 11332 195 39 27 chr6 39222745 39224582 -150054972 - L1 LINE L1 -3143 3705 1778 2385 73 0 0 chr6 39224582 39224883 -150054671 - AluY SINE Alu -10 301 1 11332 195 39 27 chr6 39224883 39226052 -150053502 - L1 LINE L1 -5070 1778 624 230 362 26 9 chr6 39226160 39226276 -150053278 - L1M2 LINE L1 -6065 784 667 192 77 0 0 chr6 39226339 39226365 -150053189 + (CAG)n Simple_repeat Simple_repeat 3 28 0 188 268 0 0 chr6 39226395 39226436 -150053118 - L2 LINE L2 -36 3277 3237 1864 137 0 10 chr6 39226458 39226750 -150052804 + AluSx SINE Alu 15 303 -9 373 331 194 19 chr6 39226812 39227132 -150052422 + L2 LINE L2 2919 3294 -19 778 209 19 6 chr6 39227218 39227376 -150052178 + FRAM SINE Alu 1 160 -6 239 171 0 0 chr6 39227380 39227415 -150052139 + Alu SINE Alu 2 36 -97 2476 55 0 3 chr6 39227715 39228024 -150051530 + AluY SINE Alu 2 309 -2 464 234 39 23 chr6 39228463 39228591 -150050963 - L2 LINE L2 -5 3308 3179 204 125 0 0 chr6 39230209 39230241 -150049313 + (TCC)n Simple_repeat Simple_repeat 2 33 0 315 164 0 0 chr6 39230303 39230364 -150049190 + CT-rich Low_complexity Low_complexity 2 62 0 1067 62 0 0 chr6 39231648 39231776 -150047778 + AluY SINE Alu 1 128 -183 342 315 55 7 chr6 39232128 39232274 -150047280 + MIR SINE MIR 50 202 -60 1230 178 58 3 chr6 39233067 39233374 -150046180 - MER33 DNA MER1_type -22 302 1 205 200 0 0 chr6 39234159 39234199 -150045355 + A-rich Low_complexity Low_complexity 1 40 0 1980 100 11 4 chr6 39234403 39234682 -150044872 + AluSq SINE Alu 1 281 -32 258 32 0 0 chr6 39234684 39234715 -150044839 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2228 104 0 0 chr6 39235869 39236166 -150043388 + AluSq SINE Alu 9 305 -8 236 259 26 35 chr6 39236208 39236324 -150043230 + GA-rich Low_complexity Low_complexity 6 120 0 1025 137 35 25 chr6 39237051 39237177 -150042377 + Charlie5 DNA MER1_type 2 132 -2492 1859 131 65 0 chr6 39237177 39237468 -150042086 + AluSx SINE Alu 1 310 -2 1025 137 35 25 chr6 39237468 39237538 -150042016 + Charlie5 DNA MER1_type 132 200 -2424 940 134 51 106 chr6 39237536 39237811 -150041743 + Charlie5 DNA MER1_type 2352 2611 -1 * 1664 134 29 35 chr6 39238596 39238910 -150040644 - AluJb SINE Alu 0 312 1 375 270 74 20 chr6 39239592 39239740 -150039814 - MIR SINE MIR -71 191 36 650 209 23 0 chr6 39241558 39241687 -150037867 - MER94 DNA DNA -1 133 2 587 291 23 17 chr6 39242066 39242238 -150037316 - MER5A DNA MER1_type -16 173 1 210 320 19 0 chr6 39242242 39242319 -150037235 - MIR SINE MIR -109 99 36 2255 112 0 3 chr6 39242654 39242968 -150036586 - AluSq SINE Alu 0 313 1 965 259 63 32 chr6 39243390 39243768 -150035786 + L1MC4a LINE L1 5544 5933 -1875 1756 145 0 60 chr6 39244104 39244421 -150035133 + AluJb SINE Alu 13 310 -2 301 219 156 39 chr6 39244431 39244559 -150034995 + L1ME4a LINE L1 5410 5552 -569 861 240 133 13 chr6 39244656 39244889 -150034665 - MIR SINE MIR 0 262 2 2193 64 0 0 chr6 39244949 39245258 -150034296 + AluY SINE Alu 1 309 0 1252 156 33 0 chr6 39245265 39245477 -150034077 - MER20 DNA MER1_type 0 219 1 385 256 73 46 chr6 39245694 39245913 -150033641 + L1ME4a LINE L1 5894 6118 -3 311 278 46 76 chr6 39245918 39246181 -150033373 + L1ME LINE L1 5319 5573 -548 918 139 0 0 chr6 39246425 39246576 -150032978 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1998 113 3 3 chr6 39246578 39246861 -150032693 - AluSq SINE Alu -30 283 1 371 127 0 0 chr6 39247370 39247425 -150032129 + MLT2D LTR ERVL 1 55 -359 253 320 112 11 chr6 39247617 39247795 -150031759 + L3 LINE CR1 1084 1279 -298 1770 161 32 84 chr6 39247840 39247956 -150031598 + MLT1B LTR MaLR 7 127 -263 4533 108 35 51 chr6 39247956 39248323 -150031231 - MER4E LTR ERV1 0 766 394 2162 99 3 3 chr6 39248323 39248625 -150030929 - AluSx SINE Alu -9 303 2 4533 108 35 51 chr6 39248625 39249036 -150030518 - MER4E LTR ERV1 -372 394 1 1770 161 32 84 chr6 39249036 39249324 -150030230 + MLT1B LTR MaLR 127 390 0 296 271 8 81 chr6 39249479 39249621 -150029933 + L1MC4a LINE L1 5517 5651 -470 2478 172 82 64 chr6 39249621 39250232 -150029322 + LTR26E LTR ERV1 1 622 0 296 271 8 81 chr6 39250232 39250249 -150029305 + L1MC4a LINE L1 5651 5668 -453 325 285 95 88 chr6 39250288 39250572 -150028982 - L2 LINE L2 0 3313 3028 390 234 81 8 chr6 39250599 39250723 -150028831 + L1ME4a LINE L1 5986 6118 -3 755 140 185 0 chr6 39250902 39251059 -150028495 + MER53 DNA DNA 1 186 -3 2206 95 10 3 chr6 39251220 39251526 -150028028 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr6 39251823 39251854 -150027700 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr6 39252361 39252398 -150027156 + AT_rich Low_complexity Low_complexity 1 37 0 205 314 0 0 chr6 39252425 39252476 -150027078 + L2 LINE L2 3190 3240 -32 278 229 115 32 chr6 39252541 39252698 -150026856 + L1MC4a LINE L1 5853 6022 -1786 1714 196 0 0 chr6 39253218 39253530 -150026024 - AluJb SINE Alu 0 312 1 180 222 0 0 chr6 39254726 39254762 -150024792 + MIR SINE MIR 111 146 -116 2571 191 96 36 chr6 39255623 39255693 -150023861 - MER69 DNA AcHobo -3 2523 2459 2045 100 0 37 chr6 39255693 39256014 -150023540 + AluSc SINE Alu 1 309 0 2571 191 96 36 chr6 39256014 39256760 -150022794 - MER69 DNA AcHobo -67 2459 1650 2199 219 151 11 chr6 39256790 39257353 -150022201 - MER69 DNA AcHobo -1835 691 50 1120 162 43 32 chr6 39257830 39258083 -150021471 - L1MA8 LINE L1 -133 6158 5903 194 292 42 14 chr6 39259294 39259366 -150020188 - L2 LINE L2 -39 3274 3201 365 351 0 15 chr6 39259453 39259584 -150019970 - MER91A DNA MER1_type -8 188 60 201 255 39 0 chr6 39259815 39259866 -150019688 - L2 LINE L2 -2 3270 3218 356 264 192 10 chr6 39260155 39260348 -150019206 - L1MC4a LINE L1 -1702 6106 5879 29 0 0 0 chr6 39260348 39260377 -150019177 + AT_rich Low_complexity Low_complexity 1 29 0 2157 74 60 0 chr6 39260491 39260774 -150018780 - AluY SINE Alu -11 300 1 1587 240 49 48 chr6 39260784 39261351 -150018203 - L1MC4a LINE L1 -1926 5882 5315 207 239 0 0 chr6 39261716 39261783 -150017771 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 314 362 26 0 chr6 39261843 39261959 -150017595 + MIR SINE MIR 11 129 -133 363 327 93 16 chr6 39261982 39262239 -150017315 - L2 LINE L2 -2361 953 677 871 244 95 95 chr6 39262252 39262512 -150017042 - MER21B LTR ERV1 -417 446 184 2327 90 0 3 chr6 39262512 39262824 -150016730 + AluSq SINE Alu 1 311 -2 871 244 95 95 chr6 39262824 39262912 -150016642 - MER21B LTR ERV1 -678 185 98 445 211 67 19 chr6 39263035 39263139 -150016415 + Tigger5 DNA MER2_type 2215 2323 0 296 150 167 0 chr6 39263139 39263199 -150016355 - MER21B LTR ERV1 -793 70 1 301 258 21 21 chr6 39263704 39263797 -150015757 + L3b LINE CR1 1290 1382 -201 237 329 38 0 chr6 39265200 39265279 -150014275 + MIR3 SINE MIR 116 197 -11 231 283 0 0 chr6 39265384 39265444 -150014110 + T-rich Low_complexity Low_complexity 5 64 0 216 0 0 0 chr6 39265651 39265675 -150013879 + (CA)n Simple_repeat Simple_repeat 2 25 0 296 313 101 46 chr6 39265689 39265906 -150013648 - L1MC4a LINE L1 -1901 5907 5679 567 295 82 62 chr6 39265934 39266290 -150013264 - L1MC4a LINE L1 -1161 4985 4623 432 322 96 17 chr6 39266763 39266916 -150012638 - L2 LINE L2 0 3313 3173 1988 107 0 0 chr6 39266916 39267188 -150012366 - AluSg1 SINE Alu 0 309 38 432 322 96 17 chr6 39267188 39267326 -150012228 - L2 LINE L2 -140 3173 2999 492 278 56 140 chr6 39267375 39267455 -150012099 - L2 LINE L2 -755 2559 2474 6829 57 7 0 chr6 39267455 39268301 -150011253 + L1PA7 LINE L1 5288 6139 -15 492 278 56 140 chr6 39268301 39268587 -150010967 - L2 LINE L2 -840 2474 2165 868 137 0 0 chr6 39268587 39268711 -150010843 + AluJo SINE Alu 4 127 -175 492 278 56 140 chr6 39268711 39268767 -150010787 - L2 LINE L2 -1149 2165 2106 982 177 0 0 chr6 39268767 39268931 -150010623 + AluJo SINE Alu 137 300 -2 492 278 56 140 chr6 39268931 39269190 -150010364 - L2 LINE L2 -1208 2106 1934 527 314 171 14 chr6 39269199 39269638 -150009916 - L2 LINE L2 -1776 1538 1031 485 288 190 40 chr6 39270054 39270533 -150009021 - L1 LINE L1 -876 5270 4720 529 266 91 35 chr6 39270634 39270833 -150008721 + MIR SINE MIR 5 214 -48 1739 140 6 56 chr6 39274270 39274592 -150004962 - AluJb SINE Alu -6 306 1 1865 260 64 43 chr6 39274748 39275749 -150003805 - L1MEd LINE L1 -4862 1257 318 30 0 0 0 chr6 39276014 39276044 -150003510 + AT_rich Low_complexity Low_complexity 1 30 0 434 222 69 21 chr6 39276046 39276190 -150003364 - L1M4 LINE L1 -917 5229 5079 2116 123 113 49 chr6 39276984 39277392 -150002162 + Tigger2a DNA MER2_type 1 434 0 225 282 153 0 chr6 39278299 39278384 -150001170 + L2 LINE L2 3132 3229 -43 1539 183 138 42 chr6 39284355 39284781 -149994773 + MLT1C LTR MaLR 1 467 0 200 339 0 35 chr6 39285355 39285470 -149994084 + C-rich Low_complexity Low_complexity 3 113 0 334 270 197 26 chr6 39288193 39288345 -149991209 - MIR3 SINE MIR -28 180 3 291 290 10 30 chr6 39288400 39288515 -149991039 + CT-rich Low_complexity Low_complexity 1 196 0 1459 190 9 8 chr6 39289117 39289407 -149990147 + MLT1D LTR MaLR 231 505 0 806 221 23 6 chr6 39289696 39289868 -149989686 + MER5B DNA MER1_type 1 175 -3 998 276 75 41 chr6 39289904 39290342 -149989212 + L2 LINE L2 2853 3305 -8 394 317 81 6 chr6 39291893 39292054 -149987500 - MIR SINE MIR -70 192 20 189 0 0 0 chr6 39292311 39292332 -149987222 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 43960 32 22 1 chr6 39292332 39298348 -149981206 - L1PA3 LINE L1 -10 6145 1 195 69 0 0 chr6 39298404 39298433 -149981121 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1946 129 4 0 chr6 39298433 39298712 -149980842 - AluSx SINE Alu -32 280 1 195 100 0 0 chr6 39298736 39298766 -149980788 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 927 270 159 31 chr6 39298766 39299281 -149980273 - L2 LINE L2 -13 3300 2712 225 0 0 0 chr6 39299283 39299308 -149980246 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 656 197 0 41 chr6 39299308 39299430 -149980124 - FLAM_C SINE Alu -25 118 2 357 290 30 0 chr6 39299676 39299776 -149979778 - MIR3 SINE MIR 0 208 106 2307 85 7 0 chr6 39299888 39300195 -149979359 + AluSc SINE Alu 1 309 0 949 149 29 6 chr6 39300516 39300690 -149978864 + MER53 DNA DNA 9 186 -3 481 339 15 20 chr6 39300719 39300914 -149978640 - L2 LINE L2 -182 3090 2897 323 337 67 36 chr6 39301099 39301292 -149978262 - L2 LINE L2 -685 2629 2431 211 319 0 14 chr6 39301480 39301549 -149978005 + CT-rich Low_complexity Low_complexity 4 71 0 220 195 0 0 chr6 39301810 39301851 -149977703 - MIR3 SINE MIR -51 157 117 590 266 74 10 chr6 39302023 39302226 -149977328 - L2 LINE L2 0 3313 3098 407 341 7 0 chr6 39302432 39302567 -149976987 + L2 LINE L2 2897 3032 -240 496 302 81 9 chr6 39302567 39302857 -149976697 - L2 LINE L2 -209 3104 2797 534 281 182 6 chr6 39302861 39303196 -149976358 - L2 LINE L2 -682 2632 2239 26 0 0 0 chr6 39303225 39303251 -149976303 + AT_rich Low_complexity Low_complexity 1 26 0 2318 78 13 3 chr6 39304226 39304535 -149975019 + AluSp SINE Alu 2 313 0 499 163 0 0 chr6 39304730 39304810 -149974744 - MIR SINE MIR -110 152 73 317 301 168 9 chr6 39304899 39305012 -149974542 - L2 LINE L2 0 3313 3183 745 143 16 16 chr6 39305326 39305452 -149974102 + FLAM_C SINE Alu 1 126 -7 360 277 54 34 chr6 39305636 39305784 -149973770 + L1MC4a LINE L1 5780 5930 -1878 527 235 181 47 chr6 39306212 39306489 -149973065 - HAL1 LINE L1 -4 2503 2190 351 0 0 0 chr6 39306517 39306556 -149972998 + (CA)n Simple_repeat Simple_repeat 2 40 0 1865 139 3 23 chr6 39306663 39306973 -149972581 + AluSx SINE Alu 7 310 -2 2153 81 16 10 chr6 39307801 39308110 -149971444 + AluY SINE Alu 1 311 0 2262 236 29 11 chr6 39308210 39308769 -149970785 + MER90 LTR ERV1 2 570 -5 437 297 47 20 chr6 39308893 39309041 -149970513 - L2 LINE L2 0 3313 3162 357 261 53 106 chr6 39309433 39309621 -149969933 + L1MC4 LINE L1 7864 8041 -1 393 207 46 0 chr6 39310381 39310468 -149969086 + MLT1C LTR MaLR 2 92 -375 1773 155 0 69 chr6 39310470 39310805 -149968749 + AluJb SINE Alu 1 312 0 545 159 0 9 chr6 39310805 39310912 -149968642 + GA-rich Low_complexity Low_complexity 2 107 0 1442 198 120 11 chr6 39310924 39311273 -149968281 + MLT1C LTR MaLR 81 467 0 231 170 0 0 chr6 39311283 39311330 -149968224 + (TG)n Simple_repeat Simple_repeat 2 48 0 237 261 120 22 chr6 39312021 39312113 -149967441 - L2 LINE L2 -187 3085 2985 382 194 101 1 chr6 39313238 39313334 -149966220 - L1MC/D LINE L1 -412 5758 5674 1469 185 69 29 chr6 39313340 39313686 -149965868 + LTR47B LTR ERVL 84 443 0 708 269 60 60 chr6 39314930 39315031 -149964523 + L1MC5 LINE L1 7352 7452 -509 3138 179 16 11 chr6 39315031 39315583 -149963971 + MER41D LTR ERV1 3 557 0 708 269 60 60 chr6 39315583 39315913 -149963641 + L1MC5 LINE L1 7451 7783 -178 2022 194 16 34 chr6 39315915 39316471 -149963083 + L1MC3 LINE L1 7000 7692 -93 235 143 125 0 chr6 39316473 39316529 -149963025 + L1MC2 LINE L1 6281 6343 -1 343 248 88 9 chr6 39316536 39316649 -149962905 + L1MC5 LINE L1 7790 7911 -50 1603 155 97 7 chr6 39316667 39316945 -149962609 + AluJo SINE Alu 1 303 -9 2971 170 42 5 chr6 39317016 39317593 -149961961 - L1MB3 LINE L1 0 6183 5586 234 309 109 40 chr6 39319101 39319276 -149960278 - MLT1K LTR MaLR -250 338 152 945 109 32 19 chr6 39319338 39319494 -149960060 - L1MA5 LINE L1 0 6300 6143 7688 185 4 7 chr6 39319494 39321257 -149958297 + L1PB1 LINE L1 3770 5527 -624 1361 58 0 2 chr6 39321257 39321517 -149958037 - AluY SINE Alu 0 311 2 3633 94 54 15 chr6 39321518 39322051 -149957503 + L1PB1 LINE L1 5514 6067 -84 7924 165 19 110 chr6 39322052 39322528 -149957026 - L1MB3 LINE L1 -816 5330 4812 2247 85 41 0 chr6 39322528 39322821 -149956733 + AluSg SINE Alu 1 305 -5 7924 165 19 110 chr6 39322821 39324463 -149955091 - L1MB3 LINE L1 -1334 4812 3405 2634 181 93 58 chr6 39324464 39324979 -149954575 - MER65-int LTR ERV1 -757 1029 1090 2432 77 0 0 chr6 39324979 39325277 -149954277 + AluY SINE Alu 1 298 -13 2634 181 93 58 chr6 39325277 39325562 -149953992 - MER65-int LTR ERV1 -695 1091 817 2323 74 0 14 chr6 39325999 39326296 -149953258 + AluY SINE Alu 1 293 -18 21 36 0 0 chr6 39327146 39327174 -149952380 + AT_rich Low_complexity Low_complexity 1 28 0 309 259 54 45 chr6 39327724 39327836 -149951718 + L2 LINE L2 1700 1812 -1502 1935 271 143 56 chr6 39327838 39328364 -149951190 - HAL1 LINE L1 -10 2497 2018 1120 208 124 69 chr6 39328364 39328710 -149950844 + MLT1A1 LTR MaLR 1 365 0 1935 271 143 56 chr6 39328710 39329587 -149949967 - HAL1 LINE L1 -489 2018 972 226 356 46 26 chr6 39329648 39329842 -149949712 + L2 LINE L2 3116 3313 0 230 326 35 28 chr6 39330066 39330207 -149949347 + MIR SINE MIR 101 242 -20 261 347 24 14 chr6 39330221 39330434 -149949120 - L1ME LINE L1 -354 5767 5553 2012 64 4 16 chr6 39330442 39330722 -149948832 - AluY SINE Alu 0 312 36 2103 261 83 4 chr6 39330973 39331536 -149948018 + MER90 LTR ERV1 5 612 -2 1756 171 24 0 chr6 39331865 39332152 -149947402 + AluSx SINE Alu 1 294 -18 1134 168 35 15 chr6 39332587 39332789 -149946765 - MER3 DNA MER1_type -2 207 2 1778 191 57 17 chr6 39332791 39333142 -149946412 + MLT1A1 LTR MaLR 1 365 0 1423 184 0 106 chr6 39333205 39333536 -149946018 + AluJo SINE Alu 1 296 -16 4122 218 100 41 chr6 39333858 39334209 -149945345 + Charlie1a DNA MER1_type 7 336 -2425 2013 141 3 13 chr6 39334209 39334514 -149945040 + AluSx SINE Alu 1 302 -10 4122 218 100 41 chr6 39334514 39335106 -149944448 + Charlie1a DNA MER1_type 336 892 -1869 1383 197 48 7 chr6 39335106 39335401 -149944153 + AluJo SINE Alu 1 307 -5 4122 218 100 41 chr6 39335401 39335824 -149943730 + Charlie1a DNA MER1_type 892 1455 0 274 233 181 35 chr6 39336595 39336711 -149942843 + L3 LINE CR1 956 1088 -489 * 2317 276 111 29 chr6 39336678 39337811 -149941743 - L2 LINE L2 -2 3311 2108 305 271 308 0 chr6 39337884 39338017 -149941537 - MER5A DNA MER1_type -7 182 9 318 299 132 7 chr6 39338046 39338190 -149941364 - MER5B DNA MER1_type -16 162 1 209 33 33 0 chr6 39338277 39338307 -149941247 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 501 326 47 63 chr6 39338329 39338691 -149940863 - LTR67 LTR ERVL -98 459 104 2880 146 124 10 chr6 39339213 39339712 -149939842 - MER21A LTR ERV1 0 931 376 1281 135 90 12 chr6 39339717 39339962 -149939592 - MER21A LTR ERV1 -667 264 1 2132 178 0 29 chr6 39339971 39340347 -149939207 - MLT1A1 LTR MaLR 0 365 1 6040 198 49 63 chr6 39340424 39340791 -149938763 + L1MB7 LINE L1 3576 3947 -2237 613 238 0 24 chr6 39340791 39340917 -149938637 + FLAM_A SINE Alu 4 126 -7 6040 198 49 63 chr6 39340917 39341000 -149938554 + L1MB7 LINE L1 3947 4030 -2154 2122 138 126 31 chr6 39341000 39341390 -149938164 - MSTA LTR MaLR -1 427 1 6040 198 49 63 chr6 39341390 39342017 -149937537 + L1MB7 LINE L1 4030 4665 -1519 1869 164 6 13 chr6 39342017 39342329 -149937225 + AluJo SINE Alu 1 310 -2 6040 198 49 63 chr6 39342329 39342579 -149936975 + L1MB7 LINE L1 4665 4917 -1267 1829 218 21 46 chr6 39342579 39343056 -149936498 + MLT1C LTR MaLR 3 467 0 6040 198 49 63 chr6 39343056 39343173 -149936381 + L1MB7 LINE L1 4917 5034 -1150 2332 85 0 0 chr6 39343173 39343455 -149936099 + AluSg SINE Alu 1 282 -28 201 39 0 0 chr6 39343455 39343481 -149936073 + (TA)n Simple_repeat Simple_repeat 2 27 0 6040 198 49 63 chr6 39343481 39343615 -149935939 + L1MB7 LINE L1 5033 5167 -1017 374 125 111 0 chr6 39343615 39343687 -149935867 + L1MA7 LINE L1 6211 6290 -1 6040 198 49 63 chr6 39343687 39343877 -149935677 + L1MB7 LINE L1 5167 5358 -826 2153 134 0 0 chr6 39343877 39344175 -149935379 + AluSx SINE Alu 3 300 -12 6040 198 49 63 chr6 39344175 39344293 -149935261 + L1MB7 LINE L1 5358 5476 -708 2147 104 0 4 chr6 39344293 39344573 -149934981 + AluSg SINE Alu 1 279 -31 294 95 0 0 chr6 39344576 39344618 -149934936 + (CA)n Simple_repeat Simple_repeat 2 43 0 6040 198 49 63 chr6 39344618 39345263 -149934291 + L1MB7 LINE L1 5478 6102 -82 6002 138 54 7 chr6 39345346 39345628 -149933926 - L1MA4A LINE L1 -6 6297 6030 357 43 0 0 chr6 39345628 39345675 -149933879 + (CA)n Simple_repeat Simple_repeat 1 47 0 6002 138 54 7 chr6 39345675 39346870 -149932684 - L1MA4A LINE L1 -273 6030 4750 1055 152 76 5 chr6 39346932 39347116 -149932438 - AluJb SINE Alu -16 296 100 2117 181 15 2 chr6 39347117 39347521 -149932033 + L1 LINE L1 3439 3847 -2299 230 196 0 0 chr6 39348081 39348127 -149931427 - L2 LINE L2 -5 3308 3263 747 201 151 102 chr6 39348314 39348737 -149930817 + L1ME3A LINE L1 5727 6170 0 801 199 64 6 chr6 39349504 39349675 -149929879 - MER3 DNA MER1_type 0 209 29 221 260 0 65 chr6 39350436 39350513 -149929041 + GA-rich Low_complexity Low_complexity 1 72 0 362 264 7 76 chr6 39350806 39350950 -149928604 - L1ME1 LINE L1 -6 6160 6027 961 139 52 17 chr6 39351241 39351413 -149928141 + FRAM SINE Alu 1 175 -1 7981 35 0 1 chr6 39351887 39353573 -149925981 + L1PA3 LINE L1 4504 6155 0 510 221 0 0 chr6 39354391 39354563 -149924991 + (TG)n Simple_repeat Simple_repeat 1 172 0 2353 91 0 0 chr6 39355465 39355772 -149923782 - AluSg SINE Alu -3 307 1 746 296 123 37 chr6 39355875 39356583 -149922971 + L2 LINE L2 2513 3295 -18 242 296 151 30 chr6 39356592 39356650 -149922904 + L1ME LINE L1 5536 5586 -535 1855 122 0 0 chr6 39356650 39356904 -149922650 + AluSx SINE Alu 47 300 -12 242 296 151 30 chr6 39356904 39357183 -149922371 + L1ME LINE L1 5586 5914 -207 1340 205 40 44 chr6 39357499 39357796 -149921758 - AluJo SINE Alu -6 296 1 1518 179 14 10 chr6 39358515 39358805 -149920749 - AluJb SINE Alu -19 293 3 400 279 30 131 chr6 39359088 39359233 -149920321 - L2 LINE L2 0 3272 3179 360 43 0 0 chr6 39359233 39359279 -149920275 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 400 279 30 131 chr6 39359279 39359470 -149920084 - L2 LINE L2 -93 3179 2970 717 150 13 23 chr6 39359632 39359788 -149919766 - MER5A DNA MER1_type -39 150 3 259 330 23 39 chr6 39360755 39361013 -149918541 - L1MC4a LINE L1 -1785 6023 5770 341 299 99 24 chr6 39361137 39361431 -149918123 + L1ME3 LINE L1 5625 5940 -222 1631 188 7 7 chr6 39361432 39361724 -149917830 + AluJb SINE Alu 1 292 -20 1824 261 97 10 chr6 39362406 39363106 -149916448 + L1ME2 LINE L1 5402 6162 -2 963 207 18 0 chr6 39363152 39363369 -149916185 + L1MA4A LINE L1 3742 3962 -2184 5408 150 26 27 chr6 39363381 39364825 -149914729 + L1MA4A LINE L1 4861 6298 -5 284 73 0 109 chr6 39365250 39365305 -149914249 + MLT1B LTR MaLR 1 49 -341 * 941 161 33 0 chr6 39365302 39365482 -149914072 + MLT1B LTR MaLR 205 390 0 287 305 49 44 chr6 39365903 39366083 -149913471 - MIR SINE MIR -63 199 21 180 195 98 0 chr6 39368621 39368662 -149910892 - MIR SINE MIR -98 164 120 184 367 0 51 chr6 39368730 39368809 -149910745 - MIR SINE MIR -165 97 23 574 163 98 0 chr6 39368839 39368962 -149910592 + Tigger1 DNA MER2_type 2042 2176 -242 2818 230 72 104 chr6 39368962 39369330 -149910224 + L2 LINE L2 295 673 -2641 1943 218 101 27 chr6 39369330 39369913 -149909641 + MLT1E2 LTR MaLR 1 626 0 2818 230 72 104 chr6 39369913 39370951 -149908603 + L2 LINE L2 673 1656 -1658 884 306 72 27 chr6 39370951 39371395 -149908159 + LTR16B LTR ERVL 1 464 0 2720 319 49 41 chr6 39372085 39373671 -149905883 + ERVL LTR ERVL 858 2430 -2855 2030 129 7 0 chr6 39373671 39373950 -149905604 + AluSq SINE Alu 1 281 -32 294 29 0 0 chr6 39373954 39373989 -149905565 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2720 319 49 41 chr6 39373989 39374785 -149904769 + ERVL LTR ERVL 2432 3385 -1900 786 370 38 14 chr6 39374977 39375769 -149903785 + ERVL LTR ERVL 4103 4914 -571 436 329 18 0 chr6 39376083 39376247 -149903307 + LTR16B LTR ERVL 62 228 -236 886 208 15 15 chr6 39376257 39376454 -149903100 + MLT1F1 LTR MaLR 371 567 0 1665 179 7 10 chr6 39376518 39376815 -149902739 - AluJb SINE Alu -16 296 1 1745 222 77 71 chr6 39376988 39377511 -149902043 + MLT1E3 LTR MaLR 14 543 -81 1341 226 9 28 chr6 39377511 39377829 -149901725 + AluJo SINE Alu 1 312 0 1745 222 77 71 chr6 39377829 39377912 -149901642 + MLT1E3 LTR MaLR 543 624 0 217 204 0 0 chr6 39378047 39378096 -149901458 - L2 LINE L2 0 3313 3265 282 268 56 0 chr6 39378145 39378216 -149901338 - L2 LINE L2 -554 2760 2686 180 152 0 0 chr6 39379017 39379050 -149900504 + A-rich Low_complexity Low_complexity 1 33 0 1141 297 98 26 chr6 39383707 39383825 -149895729 - L2 LINE L2 -2 3311 3203 942 170 55 77 chr6 39383825 39384060 -149895494 - MER30 DNA MER1_type 0 230 1 1141 297 98 26 chr6 39384060 39384840 -149894714 - L2 LINE L2 -110 3203 2352 410 247 42 47 chr6 39385123 39385405 -149894149 + L1MEc LINE L1 2145 2386 -3829 891 203 38 0 chr6 39385488 39385646 -149893908 - FRAM SINE Alu -14 162 1 506 182 170 42 chr6 39386155 39386320 -149893234 + MER20 DNA MER1_type 32 217 -2 311 285 169 15 chr6 39386321 39386451 -149893103 - MIR SINE MIR -91 171 22 21 0 0 0 chr6 39387773 39387794 -149891760 + AT_rich Low_complexity Low_complexity 1 21 0 1442 231 46 27 chr6 39387968 39388445 -149891109 + L1MB4 LINE L1 4904 5389 -757 2265 117 0 7 chr6 39388456 39388755 -149890799 + AluSc SINE Alu 1 297 -12 3476 164 44 9 chr6 39388799 39389464 -149890090 + L1MB4 LINE L1 5493 6180 0 1074 169 4 24 chr6 39389608 39389845 -149889709 - MER4A LTR ERV1 -113 551 261 578 116 0 21 chr6 39389849 39389944 -149889610 - MER4A LTR ERV1 -571 93 1 376 243 40 0 chr6 39389963 39390111 -149889443 + L1MC5 LINE L1 7299 7452 -509 429 359 46 27 chr6 39390210 39390892 -149888662 + HERV16 LTR ERVL 2726 3478 -1925 431 348 27 27 chr6 39391059 39391603 -149887951 + HERV16 LTR ERVL 3619 4228 -1181 280 229 14 0 chr6 39392362 39392432 -149887122 + MER4B-int LTR ERV1 6000 6070 -688 1857 189 58 23 chr6 39392438 39392866 -149886688 + LTR47B LTR ERVL 1 443 0 634 285 53 53 chr6 39394110 39394211 -149885343 + L1MC5 LINE L1 7352 7452 -509 2973 179 16 11 chr6 39394211 39394763 -149884791 + MER41D LTR ERV1 3 557 0 634 285 53 53 chr6 39394763 39395093 -149884461 + L1MC5 LINE L1 7451 7783 -178 551 214 41 14 chr6 39395095 39395240 -149884314 + L1MC3 LINE L1 7000 7148 -637 207 289 67 22 chr6 39400437 39400527 -149879027 + L3 LINE CR1 934 1027 -550 201 313 70 17 chr6 39400539 39400654 -149878900 - L2 LINE L2 -2 3311 3191 382 128 0 1 chr6 39400657 39400741 -149878813 - MER30 DNA MER1_type 0 230 140 1588 323 66 46 chr6 39401151 39402636 -149876918 + HERV16 LTR ERVL 1951 3088 -1908 744 313 21 18 chr6 39402765 39403049 -149876505 + HERV16 LTR ERVL 4108 4392 -1262 254 85 0 21 chr6 39403418 39403430 -149876124 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 254 85 0 21 chr6 39403430 39403477 -149876077 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 705 323 36 16 chr6 39403904 39404288 -149875266 + LTR16B LTR ERVL 69 460 -4 352 218 0 0 chr6 39404404 39404482 -149875072 + MLT1F1 LTR MaLR 488 565 -2 201 281 18 0 chr6 39404543 39404600 -149874954 + L2 LINE L2 1780 1837 -1477 376 311 140 11 chr6 39404909 39405260 -149874294 + L1ME3A LINE L1 5554 5949 -221 1907 146 18 0 chr6 39405447 39405763 -149873791 - AluSq SINE Alu 0 321 1 40330 26 17 1 chr6 39406326 39412357 -149867197 + L1HS LINE L1 1 6155 0 432 0 0 0 chr6 39412357 39412405 -149867149 + (A)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr6 39412524 39412544 -149867010 + (A)n Simple_repeat Simple_repeat 1 20 0 643 204 0 30 chr6 39413091 39413223 -149866331 + AluJb SINE Alu 159 286 -26 318 26 0 0 chr6 39413223 39413262 -149866292 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1701 224 40 86 chr6 39413372 39413532 -149866022 + MLT1F1 LTR MaLR 15 181 -386 2065 126 3 0 chr6 39413532 39413834 -149865720 + AluSg SINE Alu 3 305 -5 1701 224 40 86 chr6 39413834 39414253 -149865301 + MLT1F1 LTR MaLR 181 567 0 2229 234 68 19 chr6 39414453 39415046 -149864508 + MLT1E3 LTR MaLR 1 622 -2 464 264 8 8 chr6 39415202 39415327 -149864227 - L2 LINE L2 -1 3312 3188 398 277 162 0 chr6 39415304 39415452 -149864102 - L2 LINE L2 -502 2812 2641 * 1394 170 4 29 chr6 39415828 39416161 -149863393 + AluJb SINE Alu 12 337 0 2268 167 41 7 chr6 39418988 39419402 -149860152 + MSTA LTR MaLR 1 428 0 2575 190 13 0 chr6 39419402 39419875 -149859679 + MSTA-int LTR MaLR 1 479 -1172 2268 239 37 21 chr6 39419884 39420449 -149859105 + MSTA-int LTR MaLR 1078 1651 0 1841 208 64 7 chr6 39420449 39420858 -149858696 + MSTB1 LTR MaLR 1 432 0 554 237 111 7 chr6 39420877 39421012 -149858542 - MER21B LTR ERV1 -694 169 21 4392 254 45 30 chr6 39421112 39422368 -149857186 - MER21B-int LTR ERV1 -50 4141 2868 536 264 14 10 chr6 39422373 39422581 -149856973 + L1M4 LINE L1 3250 3458 -2688 543 314 26 31 chr6 39422581 39422807 -149856747 + Harlequin LTR ERV1 785 1009 -6776 6891 53 10 39 chr6 39423028 39424341 -149855213 + L1PA7 LINE L1 4861 6146 -8 1052 317 32 25 chr6 39424353 39424981 -149854573 + Harlequin LTR ERV1 1401 2032 -5753 392 157 14 0 chr6 39424999 39425069 -149854485 + LTR18B LTR ERVL 332 402 -212 373 188 35 24 chr6 39425115 39425200 -149854354 + LTR18B LTR ERVL 268 353 -261 441 260 274 5 chr6 39425742 39425965 -149853589 - MER102b DNA MER1_type -3 338 56 655 312 71 63 chr6 39426616 39427206 -149852348 + Harlequin LTR ERV1 1371 1955 -5830 2274 84 0 3 chr6 39427206 39427503 -149852051 + AluY SINE Alu 1 296 -15 655 312 71 63 chr6 39427503 39427611 -149851943 + Harlequin LTR ERV1 1955 4914 -2871 363 313 0 8 chr6 39427651 39427782 -149851772 + Harlequin LTR ERV1 4411 4540 -2109 21 0 0 0 chr6 39428108 39428129 -149851425 + AT_rich Low_complexity Low_complexity 1 21 0 593 287 62 81 chr6 39428236 39428849 -149850705 + Harlequin LTR ERV1 3386 5490 -1159 312 344 0 0 chr6 39428910 39429000 -149850554 - L1MC4 LINE L1 -1338 6704 6615 312 341 23 0 chr6 39428923 39429011 -149850543 + L1MC4 LINE L1 6614 6703 -1339 300 53 0 0 chr6 39429066 39429104 -149850450 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1437 317 14 23 chr6 39429105 39429666 -149849888 + Harlequin LTR ERV1 7092 7647 -138 2141 196 32 21 chr6 39433041 39433608 -149845946 + L1MB2 LINE L1 4899 5475 -708 276 30 0 0 chr6 39433608 39433641 -149845913 + (CA)n Simple_repeat Simple_repeat 2 34 0 2141 196 32 21 chr6 39433641 39433897 -149845657 + L1MB2 LINE L1 5475 5727 -456 887 180 170 5 chr6 39433887 39434087 -149845467 + L1MB2 LINE L1 5938 6170 -1 * 426 194 0 0 chr6 39435827 39435899 -149843655 - FRAM/FAM SINE Alu -105 71 1 199 302 12 12 chr6 39436208 39436294 -149843260 - MIR3 SINE MIR -110 98 13 486 195 24 0 chr6 39437000 39437114 -149842440 + MLT1E2 LTR MaLR 387 626 0 1086 276 178 39 chr6 39437134 39437958 -149841596 + L2 LINE L2 718 1656 -1658 788 325 65 18 chr6 39437958 39438401 -149841153 + LTR16B LTR ERVL 1 464 0 3153 326 52 37 chr6 39439092 39441559 -149837995 + HERV16 LTR ERVL 858 3096 -1900 543 354 31 0 chr6 39441714 39441943 -149837611 + HERV16 LTR ERVL 4158 4393 -1092 368 338 50 38 chr6 39442553 39443029 -149836525 + HERV16 LTR ERVL 4779 5260 -504 806 315 42 16 chr6 39443043 39443424 -149836130 + LTR16B LTR ERVL 69 459 -5 407 189 0 0 chr6 39443546 39443620 -149835934 + MLT1F1 LTR MaLR 491 564 -3 343 191 39 39 chr6 39443763 39443941 -149835613 + CT-rich Low_complexity Low_complexity 3 180 0 439 265 144 44 chr6 39444167 39444465 -149835089 + L1ME3A LINE L1 5545 5872 -298 236 170 0 0 chr6 39444544 39444591 -149834963 - LTR66 LTR ERVL -170 440 394 310 243 29 0 chr6 39444591 39444661 -149834893 - L1MC4 LINE L1 -1351 6691 6620 457 77 0 0 chr6 39445552 39445617 -149833937 - MER41A LTR ERV1 -88 466 402 6430 93 9 4 chr6 39445971 39447512 -149832042 + L1PA10 LINE L1 4619 6163 -5 2102 228 40 29 chr6 39447597 39447696 -149831858 + MLT1F1 LTR MaLR 6 102 -465 2149 126 55 25 chr6 39447696 39448060 -149831494 + THE1C LTR MaLR 1 375 0 2102 228 40 29 chr6 39448060 39448516 -149831038 + MLT1F1 LTR MaLR 102 567 0 1501 201 0 3 chr6 39448589 39448877 -149830677 - AluJb SINE Alu -25 287 1 2127 201 82 58 chr6 39449039 39449572 -149829982 + MLT1E3 LTR MaLR 3 554 -70 1263 207 37 34 chr6 39449572 39449867 -149829687 + AluJo SINE Alu 1 296 -16 2127 201 82 58 chr6 39449867 39449940 -149829614 + MLT1E3 LTR MaLR 554 624 0 228 204 0 0 chr6 39450063 39450112 -149829442 - L2 LINE L2 0 3313 3265 209 284 161 0 chr6 39450160 39450241 -149829313 - L2 LINE L2 -553 2761 2668 233 151 0 38 chr6 39452367 39452420 -149827134 + G-rich Low_complexity Low_complexity 3 53 0 3777 184 63 45 chr6 39455213 39456150 -149823404 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 39456616 39456641 -149822913 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 253 304 11 43 chr6 39456685 39456777 -149822777 + L3 LINE CR1 934 1022 -555 200 316 88 26 chr6 39456790 39456904 -149822650 - L2 LINE L2 -2 3311 3191 435 117 0 1 chr6 39456907 39456991 -149822563 - MER30 DNA MER1_type 0 230 140 391 280 89 19 chr6 39457401 39457558 -149821996 + ERVL LTR ERVL 1989 2156 -3608 344 122 0 0 chr6 39458064 39458113 -149821441 + MLT1F LTR MaLR 491 539 -3 290 304 0 36 chr6 39458223 39458275 -149821279 + CT-rich Low_complexity Low_complexity 1 53 -55 2347 87 3 0 chr6 39458275 39458585 -149820969 - AluY SINE Alu 0 311 1 290 304 0 36 chr6 39458585 39458644 -149820910 + CT-rich Low_complexity Low_complexity 53 108 0 231 252 19 9 chr6 39458657 39458764 -149820790 + CT-rich Low_complexity Low_complexity 3 110 0 372 296 162 23 chr6 39459030 39459375 -149820179 + L1ME3A LINE L1 5559 5951 -219 248 235 0 0 chr6 39459395 39459463 -149820091 + L1MC4 LINE L1 6636 6703 -1339 242 278 0 0 chr6 39459419 39459509 -149820045 - L1MC4 LINE L1 -1339 6703 6614 * 3515 119 20 4 chr6 39459582 39460085 -149819469 - MER9 LTR ERVK 0 511 1 6220 83 20 13 chr6 39460916 39461914 -149817640 + L1PA10 LINE L1 5164 6163 -5 1949 226 44 28 chr6 39462002 39462101 -149817453 + MLT1F1 LTR MaLR 6 102 -465 2270 144 5 24 chr6 39462101 39462482 -149817072 + THE1C LTR MaLR 1 374 -1 1949 226 44 28 chr6 39462482 39462927 -149816627 + MLT1F1 LTR MaLR 102 559 -8 1494 220 25 0 chr6 39462998 39463284 -149816270 - AluJo SINE Alu -19 293 1 1734 219 96 46 chr6 39463447 39463733 -149815821 + MLT1E3 LTR MaLR 3 273 -351 2173 96 6 22 chr6 39463733 39464045 -149815509 + AluY SINE Alu 1 307 -4 1734 219 96 46 chr6 39464045 39464302 -149815252 + MLT1E3 LTR MaLR 273 573 -51 182 245 0 0 chr6 39464437 39464486 -149815068 - L2 LINE L2 0 3272 3224 207 289 67 22 chr6 39469968 39470058 -149809496 + L3 LINE CR1 934 1027 -550 201 313 70 17 chr6 39470070 39470185 -149809369 - L2 LINE L2 -2 3311 3191 382 128 0 1 chr6 39470188 39470272 -149809282 - MER30 DNA MER1_type 0 230 140 977 163 21 16 chr6 39471185 39471375 -149808179 + MLT1B LTR MaLR 200 390 0 189 304 87 47 chr6 39471807 39471978 -149807576 - MIR SINE MIR -65 197 21 180 0 0 0 chr6 39472524 39472544 -149807010 + (A)n Simple_repeat Simple_repeat 1 20 0 2359 98 0 3 chr6 39473983 39474290 -149805264 + AluSq SINE Alu 1 306 -7 364 315 163 0 chr6 39474321 39474505 -149805049 - MIR SINE MIR -27 235 22 192 367 0 51 chr6 39475833 39475912 -149803642 - MIR SINE MIR -165 97 23 1884 155 81 3 chr6 39475943 39476291 -149803263 + Tigger1 DNA MER2_type 2043 2417 -1 1664 275 104 8 chr6 39477478 39478100 -149801454 + L2 LINE L2 18 699 -2615 1724 243 87 19 chr6 39478102 39478678 -149800876 + MLT1E2 LTR MaLR 1 615 -11 2011 234 47 123 chr6 39478709 39479724 -149799830 + L2 LINE L2 719 1656 -1658 837 311 80 20 chr6 39479724 39480162 -149799392 + LTR16B LTR ERVL 1 464 0 520 339 41 22 chr6 39480843 39481162 -149798392 + ERVL LTR ERVL 853 1177 -3819 250 348 44 13 chr6 39481187 39481414 -149798140 + ERVL LTR ERVL 1302 1535 -4119 2773 316 36 42 chr6 39481524 39482698 -149796856 + ERVL LTR ERVL 1666 2832 -2164 2240 113 3 0 chr6 39482698 39482991 -149796563 + AluSp SINE Alu 1 294 -19 2773 316 36 42 chr6 39482991 39483255 -149796299 + ERVL LTR ERVL 2832 3096 -1900 494 317 92 7 chr6 39483290 39483583 -149795971 + ERVL LTR ERVL 3187 3504 -2260 1044 345 46 36 chr6 39483646 39484798 -149794756 + ERVL LTR ERVL 3739 5245 -519 528 324 54 16 chr6 39484828 39485201 -149794353 + LTR16B LTR ERVL 73 459 -5 375 130 32 2 chr6 39485320 39485392 -149794162 + MLT1F LTR MaLR 476 539 -3 304 291 0 29 chr6 39485502 39485545 -149794009 + CT-rich Low_complexity Low_complexity 1 44 -56 2350 103 0 3 chr6 39485545 39485846 -149793708 - AluY SINE Alu -11 300 1 304 291 0 29 chr6 39485846 39485905 -149793649 + CT-rich Low_complexity Low_complexity 44 100 0 263 204 46 9 chr6 39485918 39486026 -149793528 + CT-rich Low_complexity Low_complexity 3 114 0 256 275 140 31 chr6 39486259 39486642 -149792912 + L1ME3A LINE L1 5528 5951 -219 3648 127 0 4 chr6 39486739 39487251 -149792303 - MER9 LTR ERVK 0 511 2 6459 88 13 8 chr6 39488095 39489094 -149790460 + L1PA10 LINE L1 5164 6163 -5 2039 215 43 27 chr6 39489200 39489299 -149790255 + MLT1F1 LTR MaLR 6 102 -465 2356 136 5 24 chr6 39489299 39489681 -149789873 + THE1C LTR MaLR 1 375 0 2039 215 43 27 chr6 39489681 39490134 -149789420 + MLT1F1 LTR MaLR 102 567 0 1472 218 25 0 chr6 39490201 39490486 -149789068 - AluJb SINE Alu -19 293 2 1666 223 88 47 chr6 39490650 39490936 -149788618 + MLT1E3 LTR MaLR 3 276 -348 2234 100 0 40 chr6 39490936 39491257 -149788297 + AluYa5 SINE Alu 1 308 -3 1666 223 88 47 chr6 39491257 39491518 -149788036 + MLT1E3 LTR MaLR 276 572 -52 182 265 0 0 chr6 39491654 39491703 -149787851 - L2 LINE L2 0 3313 3265 207 260 40 0 chr6 39491751 39491801 -149787753 - L2 LINE L2 -553 2761 2710 195 100 0 0 chr6 39492632 39492662 -149786892 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 39493296 39493318 -149786236 + GC_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr6 39497098 39497123 -149782431 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 190 341 93 23 chr6 39497130 39497259 -149782295 + L3 LINE CR1 888 1025 -552 187 330 70 17 chr6 39497272 39497387 -149782167 - L2 LINE L2 -2 3311 3191 353 193 0 0 chr6 39497392 39497449 -149782105 - MER30 DNA MER1_type -2 228 172 1567 337 48 34 chr6 39497839 39498887 -149780667 + HERV16 LTR ERVL 2035 3096 -1900 518 176 20 0 chr6 39498973 39499075 -149780479 + AluSp/q SINE Alu 201 304 -9 210 37 0 0 chr6 39499355 39499382 -149780172 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2062 116 4 0 chr6 39499383 39499659 -149779895 - AluSq SINE Alu -36 277 1 2143 143 0 0 chr6 39499806 39500114 -149779440 + AluSg SINE Alu 1 308 -2 186 43 0 0 chr6 39500770 39500793 -149778761 + (T)n Simple_repeat Simple_repeat 1 23 0 7240 84 54 4 chr6 39500793 39501769 -149777785 - SVA Other Other -216 1170 146 942 148 0 0 chr6 39503439 39503594 -149775960 + MSTA LTR MaLR 1 155 -273 888 228 0 0 chr6 39503595 39503788 -149775766 + MSTB1-int LTR MaLR 287 479 -1172 1951 237 27 36 chr6 39503798 39504360 -149775194 + MSTB1-int LTR MaLR 1078 1634 -17 1685 212 66 15 chr6 39504376 39504787 -149774767 + MSTB1 LTR MaLR 1 432 0 490 268 78 14 chr6 39504806 39504948 -149774606 - MER21B LTR ERV1 -694 169 19 1817 239 21 24 chr6 39505047 39505558 -149773996 - MER21B-int LTR ERV1 -50 4141 3632 1618 268 30 45 chr6 39505697 39506271 -149773283 - MER21B-int LTR ERV1 -747 3444 2880 4076 242 120 46 chr6 39506277 39507593 -149771961 + L1M4 LINE L1 3242 4750 -1396 2322 71 51 0 chr6 39507593 39507887 -149771667 + AluY SINE Alu 1 309 -2 4076 242 120 46 chr6 39507887 39508515 -149771039 + L1M4 LINE L1 4750 5330 -816 540 233 9 84 chr6 39508516 39508731 -149770823 + L1MC/D LINE L1 4835 5033 -1113 609 182 0 0 chr6 39508737 39508836 -149770718 + FLAM_A SINE Alu 1 99 -43 1831 198 55 57 chr6 39508844 39509609 -149769945 + L1MC/D LINE L1 4993 5763 -596 778 219 233 3 chr6 39509617 39509960 -149769594 - Charlie1 DNA MER1_type -994 1767 40 648 248 22 12 chr6 39510189 39510397 -149769157 + L1PB4 LINE L1 5964 6302 0 186 103 0 0 chr6 39510441 39510470 -149769084 + (TG)n Simple_repeat Simple_repeat 2 30 0 2254 109 23 3 chr6 39514029 39514332 -149765222 - AluSc SINE Alu 0 309 1 937 120 44 85 chr6 39514914 39515146 -149764408 - MER30B DNA MER1_type 0 230 1 1050 292 105 8 chr6 39515269 39515897 -149763657 - L2 LINE L2 -253 3060 2381 397 250 109 31 chr6 39516215 39516380 -149763174 + L1MEc LINE L1 2145 2298 -3917 213 39 0 0 chr6 39516380 39516406 -149763148 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 397 250 109 31 chr6 39516406 39516503 -149763051 + L1MEc LINE L1 2298 2386 -3829 836 209 38 0 chr6 39516586 39516744 -149762810 - FRAM SINE Alu -14 162 1 476 210 179 31 chr6 39517256 39517418 -149762136 + MER20 DNA MER1_type 32 217 -2 279 266 180 16 chr6 39517424 39517558 -149761996 - MIR SINE MIR -59 149 14 1633 183 48 94 chr6 39519049 39519356 -149760198 + L1P5 LINE L1 4904 5223 -928 2473 97 0 0 chr6 39519356 39519666 -149759888 + AluSx SINE Alu 1 310 -2 1633 183 48 94 chr6 39519666 39519899 -149759655 + L1P5 LINE L1 5223 5420 -731 3026 182 43 19 chr6 39519899 39520570 -149758984 + L1MB4 LINE L1 5493 6179 -1 1633 183 48 94 chr6 39520570 39520607 -149758947 + L1P5 LINE L1 5420 5457 -694 368 302 94 38 chr6 39520607 39521185 -149758369 + L2 LINE L2 2569 3181 -132 1664 216 138 12 chr6 39521185 39521222 -149758332 - MLT2B3 LTR ERVL -3 551 520 788 38 53 0 chr6 39521222 39521355 -149758199 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 1664 216 138 12 chr6 39521355 39521602 -149757952 - MLT2B3 LTR ERVL -34 520 305 267 104 0 0 chr6 39521602 39521650 -149757904 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1664 216 138 12 chr6 39521650 39521785 -149757769 - MLT2B3 LTR ERVL -249 305 78 1543 174 46 7 chr6 39521818 39522100 -149757454 - AluJb SINE Alu -19 293 1 1704 141 8 8 chr6 39522347 39522603 -149756951 + AluSx SINE Alu 35 290 -22 791 204 72 0 chr6 39522953 39523105 -149756449 + FAM SINE Alu 1 163 -12 230 93 74 0 chr6 39523330 39523384 -149756170 + (TA)n Simple_repeat Simple_repeat 1 58 0 1802 211 19 24 chr6 39524137 39524563 -149754991 - L1MB5 LINE L1 -8 6166 5743 203 161 0 0 chr6 39524604 39524635 -149754919 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 3715 228 69 74 chr6 39524649 39526193 -149753361 - L1M4c LINE L1 -4686 1960 376 1996 176 0 0 chr6 39526193 39526505 -149753049 - AluJb SINE Alu 0 312 1 3715 228 69 74 chr6 39526505 39526795 -149752759 - L1M4c LINE L1 -6270 376 86 200 246 35 0 chr6 39526805 39526862 -149752692 + MER5A DNA MER1_type 99 157 -32 2275 87 13 0 chr6 39526863 39527162 -149752392 - AluSp SINE Alu -10 303 1 186 331 75 38 chr6 39527323 39527483 -149752071 - L2 LINE L2 -4 3309 3144 321 294 65 49 chr6 39527663 39527930 -149751624 - L1MEc LINE L1 -4590 1992 1665 1991 185 46 73 chr6 39527951 39528514 -149751040 + LTR10A LTR ERV1 1 548 -61 721 258 0 6 chr6 39528654 39528832 -149750722 + MLT1D LTR MaLR 1 177 -328 265 279 74 42 chr6 39528865 39529080 -149750474 - L1M4 LINE L1 -2203 3943 3722 543 259 69 57 chr6 39529111 39529517 -149750037 + L1MC5 LINE L1 7091 7501 -460 2011 208 51 9 chr6 39531255 39531722 -149747832 + L1MB2 LINE L1 5685 6171 0 530 281 72 18 chr6 39531980 39532258 -149747296 + HAL1 LINE L1 1800 2092 -415 38 22 0 0 chr6 39532884 39532929 -149746625 + AT_rich Low_complexity Low_complexity 1 45 0 387 254 24 107 chr6 39532982 39533234 -149746320 + HAL1 LINE L1 2277 2507 0 23 68 0 0 chr6 39534380 39534424 -149745130 + AT_rich Low_complexity Low_complexity 1 44 0 335 288 141 0 chr6 39534424 39534594 -149744960 - MIR SINE MIR -39 223 30 397 279 0 16 chr6 39536330 39536452 -149743102 - L1MC4a LINE L1 -1844 5964 5845 490 285 108 34 chr6 39536656 39536948 -149742606 + L1ME3 LINE L1 5624 5937 -233 1389 232 0 4 chr6 39536952 39537232 -149742322 + AluJb SINE Alu 1 279 -33 207 0 0 0 chr6 39537235 39537258 -149742296 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1890 255 98 17 chr6 39537922 39538619 -149740935 + L1ME2 LINE L1 5411 6163 -1 230 189 19 0 chr6 39538663 39538716 -149740838 + L1M4 LINE L1 3742 3795 -2351 * 6267 166 26 39 chr6 39538688 39538966 -149740588 + L1MA4A LINE L1 3971 4251 -2052 2496 65 0 43 chr6 39538966 39539291 -149740263 + AluY SINE Alu 1 311 0 6267 166 26 39 chr6 39539291 39539549 -149740005 + L1MA4A LINE L1 4251 4511 -1792 788 197 0 0 chr6 39539549 39539681 -149739873 + FLAM_C SINE Alu 2 133 0 6267 166 26 39 chr6 39539681 39541346 -149738208 + L1MA4A LINE L1 4511 6137 -166 2431 73 0 32 chr6 39541346 39541660 -149737894 + AluY SINE Alu 1 304 -7 6267 166 26 39 chr6 39541660 39541825 -149737729 + L1MA4A LINE L1 6137 6303 0 227 182 0 109 chr6 39542260 39542315 -149737239 + MLT1B LTR MaLR 1 49 -341 * 1033 163 21 16 chr6 39542306 39542496 -149737058 + MLT1B LTR MaLR 200 390 0 180 0 0 0 chr6 39543645 39543665 -149735889 + (A)n Simple_repeat Simple_repeat 1 20 0 2338 98 0 3 chr6 39545104 39545411 -149734143 + AluSq SINE Alu 1 306 -7 2217 241 68 19 chr6 39545546 39546134 -149733420 + MLT1E3 LTR MaLR 6 622 -2 408 264 16 8 chr6 39546293 39546418 -149733136 - L2 LINE L2 0 3313 3188 290 312 43 22 chr6 39546426 39546564 -149732990 - L2 LINE L2 -549 2765 2625 2507 42 3 22 chr6 39546833 39547144 -149732410 + AluY SINE Alu 1 305 -6 1694 168 0 32 chr6 39547214 39547529 -149732025 + AluJo SINE Alu 1 305 -7 228 234 0 0 chr6 39549587 39549634 -149729920 + L1MA10 LINE L1 6185 6231 -103 2096 164 36 8 chr6 39550398 39550758 -149728796 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 39550787 39550815 -149728739 + AT_rich Low_complexity Low_complexity 1 28 0 479 113 0 0 chr6 39551667 39551738 -149727816 + MSTA LTR MaLR 358 428 0 2864 164 8 0 chr6 39551738 39552213 -149727341 + MSTB1-int LTR MaLR 1 479 -1172 2248 240 33 28 chr6 39552222 39552793 -149726761 + MSTB1-int LTR MaLR 1078 1651 0 1841 206 66 7 chr6 39552793 39553201 -149726353 + MSTB1 LTR MaLR 1 432 0 479 288 75 12 chr6 39553201 39553361 -149726193 - MER21B LTR ERV1 -675 188 19 3679 259 53 42 chr6 39553467 39554372 -149725182 - MER21B-int LTR ERV1 -58 4133 3209 2284 109 3 0 chr6 39554372 39554674 -149724880 - AluSx SINE Alu -9 303 1 3679 259 53 42 chr6 39554674 39555020 -149724534 - MER21B-int LTR ERV1 -982 3209 2868 4833 241 121 26 chr6 39555021 39556938 -149722616 + L1M4 LINE L1 3251 5348 -798 570 267 11 6 chr6 39556919 39557095 -149722459 + L1MC/D LINE L1 4842 5018 -1128 * 591 177 0 0 chr6 39557122 39557218 -149722336 + FLAM_A SINE Alu 1 96 -46 2061 203 68 26 chr6 39557231 39557963 -149721591 + L1MC/D LINE L1 4992 5765 -594 863 216 188 4 chr6 39557989 39558328 -149721226 - Charlie1 DNA MER1_type -1018 1743 38 584 274 9 50 chr6 39558533 39558752 -149720802 + L1PB4 LINE L1 5946 6155 -1 240 170 0 0 chr6 39558806 39558859 -149720695 + (TG)n Simple_repeat Simple_repeat 2 54 0 25 65 0 0 chr6 39559998 39560044 -149719510 + AT_rich Low_complexity Low_complexity 1 46 0 324 291 143 16 chr6 39560044 39560226 -149719328 - MIR SINE MIR -39 223 19 1335 265 103 14 chr6 39562838 39563460 -149716094 + L2 LINE L2 18 694 -2620 1733 237 114 14 chr6 39563467 39564038 -149715516 + MLT1E2 LTR MaLR 1 626 0 343 265 90 0 chr6 39564039 39564228 -149715326 + L2 LINE L2 698 903 -2411 1560 291 57 24 chr6 39564337 39565078 -149714476 + L2 LINE L2 892 1656 -1658 827 323 81 11 chr6 39565078 39565512 -149714042 + LTR16B LTR ERVL 1 464 0 2495 319 53 25 chr6 39566196 39568300 -149711254 + HERV16 LTR ERVL 853 3154 -2038 655 374 56 26 chr6 39568750 39569821 -149709733 + HERV16 LTR ERVL 4103 5205 -280 699 295 52 22 chr6 39569842 39570208 -149709346 + LTR16B LTR ERVL 62 438 -26 451 162 0 0 chr6 39570332 39570406 -149709148 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 39570516 39570611 -149708943 + T-rich Low_complexity Low_complexity 2 97 0 222 184 40 13 chr6 39570612 39570688 -149708866 + CT-rich Low_complexity Low_complexity 1 78 0 2308 78 10 14 chr6 39570861 39571157 -149708397 + AluY SINE Alu 1 295 -16 523 297 143 23 chr6 39571243 39571634 -149707920 + L1ME3A LINE L1 5528 5965 -205 397 157 0 0 chr6 39572526 39572596 -149706958 - MER41A LTR ERV1 -86 468 399 6516 91 16 0 chr6 39572939 39574452 -149705102 + L1PA10 LINE L1 4619 6168 0 1922 221 99 27 chr6 39574536 39574629 -149704925 + MLT1F1 LTR MaLR 15 100 -467 2050 142 34 47 chr6 39574629 39575009 -149704545 + THE1C LTR MaLR 1 375 0 1922 221 99 27 chr6 39575009 39575431 -149704123 + MLT1F1 LTR MaLR 100 567 0 1329 216 3 21 chr6 39575504 39575795 -149703759 - AluJb SINE Alu -25 287 2 1708 225 70 50 chr6 39575959 39576493 -149703061 + MLT1E3 LTR MaLR 3 431 -74 1224 227 38 34 chr6 39576493 39576784 -149702770 + AluJo SINE Alu 1 292 -20 1708 225 70 50 chr6 39576784 39576861 -149702693 + MLT1E3 LTR MaLR 431 505 0 42086 56 15 1 chr6 39577031 39583074 -149696480 + L1PA6 LINE L1 22 6148 -6 342 93 19 0 chr6 39583762 39583816 -149695738 - MER41A LTR ERV1 -88 466 412 6082 101 19 7 chr6 39584183 39585715 -149693839 + L1PA10 LINE L1 4624 6166 -2 1938 247 47 27 chr6 39585793 39585892 -149693662 + MLT1F1 LTR MaLR 6 102 -465 2159 154 5 24 chr6 39585892 39586274 -149693280 + THE1C LTR MaLR 1 375 0 1938 247 47 27 chr6 39586274 39586725 -149692829 + MLT1F1 LTR MaLR 102 567 0 1578 183 3 14 chr6 39586777 39587091 -149692463 - AluJb SINE Alu 0 311 1 1868 244 88 21 chr6 39587264 39587789 -149691765 + MLT1E3 LTR MaLR 14 573 -51 204 157 0 39 chr6 39590135 39590186 -149689368 + G-rich Low_complexity Low_complexity 5 53 0 350 354 42 29 chr6 39590498 39590953 -149688601 + ERVL LTR ERVL 4518 4978 -786 864 304 39 13 chr6 39591209 39591591 -149687963 + LTR16B LTR ERVL 69 460 -4 361 218 0 0 chr6 39591703 39591781 -149687773 + MLT1F1 LTR MaLR 488 565 -2 204 125 0 0 chr6 39591921 39591953 -149687601 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 330 331 116 3 chr6 39592208 39592492 -149687062 + L1ME3A LINE L1 5554 5869 -301 1049 73 13 0 chr6 39592760 39592911 -149686643 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 2198 113 0 0 chr6 39592913 39593196 -149686358 - AluSq SINE Alu -30 283 1 2140 229 51 22 chr6 39594302 39594848 -149684706 + MLT1F1 LTR MaLR 6 567 0 22 0 0 0 chr6 39594926 39594948 -149684606 + AT_rich Low_complexity Low_complexity 1 22 0 2217 241 68 19 chr6 39595051 39595639 -149683915 + MLT1E3 LTR MaLR 6 622 -2 408 264 16 8 chr6 39595798 39595923 -149683631 - L2 LINE L2 0 3313 3188 290 312 43 22 chr6 39595931 39596069 -149683485 - L2 LINE L2 -549 2765 2625 2507 42 3 22 chr6 39596338 39596649 -149682905 + AluY SINE Alu 1 305 -6 1694 168 0 32 chr6 39596719 39597034 -149682520 + AluJo SINE Alu 1 305 -7 228 234 0 0 chr6 39599092 39599139 -149680415 + L1MA10 LINE L1 6185 6231 -103 2096 164 36 8 chr6 39599903 39600263 -149679291 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 39600292 39600320 -149679234 + AT_rich Low_complexity Low_complexity 1 28 0 479 113 0 0 chr6 39601172 39601243 -149678311 + MSTA LTR MaLR 358 428 0 2864 164 8 0 chr6 39601243 39601718 -149677836 + MSTB1-int LTR MaLR 1 479 -1172 2248 240 33 28 chr6 39601727 39602298 -149677256 + MSTB1-int LTR MaLR 1078 1651 0 1841 206 66 7 chr6 39602298 39602706 -149676848 + MSTB1 LTR MaLR 1 432 0 479 288 75 12 chr6 39602706 39602866 -149676688 - MER21B LTR ERV1 -675 188 19 3679 259 53 42 chr6 39602972 39603877 -149675677 - MER21B-int LTR ERV1 -58 4133 3209 2284 109 3 0 chr6 39603877 39604179 -149675375 - AluSx SINE Alu -9 303 1 3679 259 53 42 chr6 39604179 39604525 -149675029 - MER21B-int LTR ERV1 -982 3209 2868 1321 284 73 8 chr6 39604526 39605062 -149674492 + L1M4 LINE L1 3251 3821 -2325 2495 319 53 25 chr6 39605558 39607662 -149671892 + HERV16 LTR ERVL 853 3154 -2038 655 374 56 26 chr6 39608112 39609183 -149670371 + HERV16 LTR ERVL 4103 5205 -280 699 295 52 22 chr6 39609204 39609570 -149669984 + LTR16B LTR ERVL 62 438 -26 451 162 0 0 chr6 39609694 39609768 -149669786 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 39609878 39609973 -149669581 + T-rich Low_complexity Low_complexity 2 97 0 189 159 48 16 chr6 39609974 39610037 -149669517 + CT-rich Low_complexity Low_complexity 2 66 0 2308 78 10 14 chr6 39610223 39610519 -149669035 + AluY SINE Alu 1 295 -16 523 297 143 23 chr6 39610605 39610996 -149668558 + L1ME3A LINE L1 5528 5965 -205 397 157 0 0 chr6 39611888 39611958 -149667596 - MER41A LTR ERV1 -86 468 399 2482 118 30 15 chr6 39712030 39712200 -149567354 + L1PB3 LINE L1 5748 5914 -240 2612 120 12 5 chr6 39712200 39712600 -149566954 - MER57A LTR ERV1 0 403 1 2482 118 30 15 chr6 39712600 39712828 -149566726 + L1PB3 LINE L1 5914 6152 -2 2140 109 0 0 chr6 39712847 39713173 -149566381 + AluSx SINE Alu 1 326 0 261 146 0 0 chr6 39713190 39713238 -149566316 + (TG)n Simple_repeat Simple_repeat 2 49 0 782 314 112 20 chr6 39713389 39714094 -149565460 - L1MEd LINE L1 -2253 3876 3071 414 299 76 52 chr6 39714177 39714468 -149565086 - L1MEd LINE L1 -4884 1235 938 249 229 33 0 chr6 39714638 39714699 -149564855 - L1ME3A LINE L1 -89 6081 6019 253 246 15 15 chr6 39714742 39714807 -149564747 + L2 LINE L2 3238 3302 -11 527 275 155 28 chr6 39714877 39715161 -149564393 + MLT1I LTR MaLR 85 404 -5 191 271 0 0 chr6 39715798 39715846 -149563708 + MIR SINE MIR 206 253 -9 21 36 0 0 chr6 39716255 39716283 -149563271 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 39716873 39716896 -149562658 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr6 39716953 39716976 -149562578 + AT_rich Low_complexity Low_complexity 1 23 0 255 133 0 0 chr6 39725182 39725227 -149554327 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 39725751 39725786 -149553768 - MER58A DNA MER1_type -2219 201 169 1700 138 93 13 chr6 39725786 39726098 -149553456 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 39726098 39726248 -149553306 - MER58A DNA MER1_type -2251 169 9 1798 101 54 82 chr6 39726342 39726658 -149552896 - AluSx SINE Alu -5 307 1 569 196 122 20 chr6 39726716 39726864 -149552690 + Tigger1 DNA MER2_type 1 163 -2255 1678 65 102 0 chr6 39729028 39729274 -149550280 + AluY SINE Alu 21 291 -20 203 336 173 0 chr6 39729673 39729777 -149549777 - MER5B DNA MER1_type -54 124 3 935 242 35 27 chr6 39731538 39731794 -149547760 - MIR SINE MIR -2 260 3 212 382 0 30 chr6 39731898 39732029 -149547525 - L2 LINE L2 -683 2631 2505 905 174 12 0 chr6 39732509 39732670 -149546884 - FRAM SINE Alu -13 163 1 1633 102 91 4 chr6 39732899 39733163 -149546391 - THE1C LTR MaLR 0 375 89 1955 126 72 13 chr6 39733288 39733606 -149545948 - MER1B DNA MER1_type 0 337 1 483 200 142 0 chr6 39733614 39733734 -149545820 - MIR SINE MIR -6 256 120 1812 134 0 21 chr6 39734620 39734910 -149544644 - AluSx SINE Alu -24 288 5 313 331 30 15 chr6 39735760 39735893 -149543661 - MIR SINE MIR -6 256 122 1706 135 6 48 chr6 39739307 39739619 -149539935 - AluSq SINE Alu -14 299 1 1802 151 6 6 chr6 39740343 39740654 -149538900 + AluJb SINE Alu 1 311 -1 197 228 43 65 chr6 39743828 39743920 -149535634 + L2 LINE L2 2970 3059 -213 1185 15 0 0 chr6 39746487 39746619 -149532935 - L1PA5 LINE L1 -585 5569 5438 4832 43 2 7 chr6 39746619 39747203 -149532351 + L1PA5 LINE L1 5572 6153 -1 271 279 29 19 chr6 39748815 39748919 -149530635 + MIR SINE MIR 108 212 -50 489 345 53 8 chr6 39749246 39749492 -149530062 + MIR SINE MIR 2 258 -4 282 275 45 124 chr6 39750847 39751025 -149528529 - MIR SINE MIR -70 192 29 197 371 181 13 chr6 39751855 39752313 -149527241 + L2 LINE L2 1856 2390 -924 272 358 80 18 chr6 39752366 39752592 -149526962 + L2 LINE L2 3032 3271 -1 338 316 32 39 chr6 39752953 39753108 -149526446 + L3 LINE CR1 1422 1575 -2 703 128 0 0 chr6 39753311 39753420 -149526134 + L1PA13 LINE L1 6048 6156 -7 765 188 141 48 chr6 39753730 39753941 -149525613 + MIR SINE MIR 34 262 0 789 212 68 56 chr6 39755617 39755867 -149523687 - MIR SINE MIR -4 258 6 446 325 77 44 chr6 39756471 39756522 -149523032 - L1ME LINE L1 -342 5828 5780 2179 179 42 0 chr6 39756522 39756930 -149522624 - MSTB1 LTR MaLR -4 428 4 446 325 77 44 chr6 39756930 39757939 -149521615 - L1ME LINE L1 -390 5780 4723 715 184 46 7 chr6 39758055 39758207 -149521347 + MER96B DNA MER1_type? 2 159 -258 209 239 197 43 chr6 39758207 39758324 -149521230 - L2 LINE L2 -1216 2098 1964 271 81 0 0 chr6 39758423 39758460 -149521094 + MSTB LTR MaLR 1 37 -389 3880 239 83 56 chr6 39759716 39760290 -149519264 + L1MEc LINE L1 1776 2333 -3882 2811 87 21 0 chr6 39760290 39760679 -149518875 + L1PA8 LINE L1 5772 6168 -4 3880 239 83 56 chr6 39760679 39761742 -149517812 + L1MEc LINE L1 2333 3466 -2749 887 163 121 133 chr6 39761742 39762148 -149517406 + MER57A LTR ERV1 3 403 0 3880 239 83 56 chr6 39762148 39762801 -149516753 + L1MEc LINE L1 3466 4100 -2115 5385 86 33 18 chr6 39763329 39764181 -149515373 + SVA Other Other 2 866 -520 6631 68 4 35 chr6 39764200 39765185 -149514369 + SVA Other Other 433 1386 0 309 328 39 8 chr6 39765440 39765568 -149513986 - L2 LINE L2 -1105 2209 2078 416 374 50 23 chr6 39765667 39765969 -149513585 + L3 LINE CR1 917 1226 -351 1059 58 29 0 chr6 39767479 39767616 -149511938 + HERVK22 LTR ERVK 4226 4366 -2471 * 52260 87 3 5 chr6 39767613 39774434 -149505120 - HERVK22 LTR ERVK -29 6808 3 2064 161 108 50 chr6 39774436 39774901 -149504653 - LTR22B LTR ERVK 0 492 1 7075 196 24 17 chr6 39774901 39776467 -149503087 + L1MA4A LINE L1 3242 4817 -1329 1413 226 22 11 chr6 39776482 39776853 -149502701 + L1PB1 LINE L1 6 380 -6483 * 4282 69 42 0 chr6 39776839 39777391 -149502163 - THE1B-int LTR MaLR -1005 575 1 2271 126 25 27 chr6 39777391 39777756 -149501798 - THE1B LTR MaLR 0 364 1 11814 190 10 31 chr6 39777756 39778113 -149501441 + L1PB1 LINE L1 3337 3700 -3167 2398 91 13 0 chr6 39778113 39778421 -149501133 + AluSq SINE Alu 1 312 -1 11814 190 10 31 chr6 39778421 39779589 -149499965 + L1PB1 LINE L1 3700 4891 -1976 7509 21 0 0 chr6 39779589 39780392 -149499162 + L1PA3 LINE L1 5346 6153 -2 11814 190 10 31 chr6 39780392 39782110 -149497444 + L1PB1 LINE L1 4891 6507 -360 392 81 41 41 chr6 39782110 39782233 -149497321 + (TA)n Simple_repeat Simple_repeat 1 123 0 2686 118 0 3 chr6 39782234 39782607 -149496947 + L1PB1 LINE L1 6492 6863 -4 5572 135 18 79 chr6 39782622 39783134 -149496420 + L1MA4A LINE L1 4802 5344 -959 1244 176 61 32 chr6 39783134 39783413 -149496141 + AluJo SINE Alu 1 287 -25 215 30 0 30 chr6 39783413 39783446 -149496108 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 5572 135 18 79 chr6 39783446 39783648 -149495906 + L1MA4A LINE L1 5343 5556 -747 729 195 8 0 chr6 39783648 39783776 -149495778 + FLAM_C SINE Alu 5 133 0 5572 135 18 79 chr6 39783776 39784642 -149494912 + L1MA4A LINE L1 5556 6295 -8 1002 244 156 10 chr6 39784951 39785259 -149494295 + MER69 DNA AcHobo 1 353 -2173 636 254 0 0 chr6 39785647 39785789 -149493765 + MER69 DNA AcHobo 1845 1986 -540 1757 164 6 29 chr6 39786199 39786511 -149493043 + AluJo SINE Alu 1 305 -7 278 209 36 36 chr6 39786975 39787085 -149492469 + L1MDb LINE L1 1130 1239 -5170 * 3568 241 27 8 chr6 39787081 39787858 -149491696 + L1M4 LINE L1 4 795 -5747 1148 207 55 48 chr6 39787858 39788252 -149491302 + MSTB2 LTR MaLR 1 445 -8 3740 216 31 20 chr6 39788255 39789264 -149490290 + L1M4 LINE L1 790 1818 -4828 487 214 0 0 chr6 39789264 39789348 -149490206 + AluJ/FLAM SINE Alu 2 85 -227 339 192 0 0 chr6 39789387 39789460 -149490094 + GA-rich Low_complexity Low_complexity 2 74 0 1102 267 105 63 chr6 39789464 39790413 -149489141 + L1M4 LINE L1 1964 2952 -3873 671 244 38 83 chr6 39790409 39790501 -149489053 + L1M4 LINE L1 3493 3588 -3056 * 2044 125 3 0 chr6 39790501 39790789 -149488765 + AluSx SINE Alu 1 289 -23 671 244 38 83 chr6 39790789 39790821 -149488733 + L1M4 LINE L1 3588 3620 -3024 213 39 0 0 chr6 39790821 39790847 -149488707 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 671 244 38 83 chr6 39790847 39791151 -149488403 + L1M4 LINE L1 3620 3902 -2742 609 166 43 86 chr6 39791151 39791290 -149488264 + FLAM_A SINE Alu 1 133 0 671 244 38 83 chr6 39791290 39791330 -149488224 + L1M4 LINE L1 3902 3942 -2702 1692 261 40 84 chr6 39791361 39791543 -149488011 + L1MB2 LINE L1 2785 2973 -3173 1778 180 3 13 chr6 39791543 39791854 -149487700 + AluJo SINE Alu 5 312 0 1692 261 40 84 chr6 39791854 39792792 -149486762 + L1MB2 LINE L1 2973 3856 -2290 281 235 82 0 chr6 39792788 39792874 -149486680 + L1MC4 LINE L1 7315 7502 -493 * 641 250 26 7 chr6 39792890 39793042 -149486512 + L1MC4 LINE L1 7315 7469 -573 290 276 20 20 chr6 39793054 39793152 -149486402 + LTR67 LTR ERVL 460 557 0 201 374 43 12 chr6 39793173 39793336 -149486218 - MIR SINE MIR -76 186 19 183 42 0 0 chr6 39793696 39793720 -149485834 + (TC)n Simple_repeat Simple_repeat 1 24 0 183 354 105 6 chr6 39793904 39794085 -149485469 - L2 LINE L2 -1040 2274 2076 201 244 0 0 chr6 39794888 39794929 -149484625 + GA-rich Low_complexity Low_complexity 2 42 0 195 232 0 0 chr6 39794942 39794998 -149484556 + GA-rich Low_complexity Low_complexity 2 57 0 300 172 26 46 chr6 39795151 39795302 -149484252 + GA-rich Low_complexity Low_complexity 4 151 0 2447 47 40 3 chr6 39796374 39796674 -149482880 + AluY SINE Alu 1 311 0 342 0 0 0 chr6 39796678 39796716 -149482838 + (TA)n Simple_repeat Simple_repeat 1 38 0 185 94 31 0 chr6 39796997 39797029 -149482525 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1914 201 37 33 chr6 39797175 39797662 -149481892 + L1MB2 LINE L1 4823 5311 -835 8398 144 44 29 chr6 39797662 39800184 -149479370 + L1MA8 LINE L1 3726 6287 -4 3783 190 35 29 chr6 39800178 39801014 -149478540 + L1MB2 LINE L1 5296 6136 -35 * 3013 231 162 29 chr6 39801009 39801965 -149477589 - MLT-int LTR MaLR -139 1596 514 * 1703 134 84 66 chr6 39802332 39802712 -149476842 - MLT1B LTR MaLR -3 387 1 1064 183 19 33 chr6 39802787 39803000 -149476554 - MER20 DNA MER1_type 0 219 10 477 298 174 52 chr6 39805866 39806628 -149472926 - L2 LINE L2 -1172 2142 1288 316 354 130 14 chr6 39806820 39807043 -149472511 + L2 LINE L2 2836 3084 -188 948 180 148 7 chr6 39809442 39809726 -149469828 - MER33 DNA MER1_type 0 324 1 241 291 87 19 chr6 39809726 39809829 -149469725 + L2 LINE L2 3163 3272 0 508 329 83 19 chr6 39810789 39811114 -149468440 + L1MEd LINE L1 868 1213 -4906 1779 114 23 62 chr6 39811646 39811981 -149467573 + AluSx SINE Alu 1 312 0 378 272 79 69 chr6 39812049 39812454 -149467100 + MLT1I LTR MaLR 1 445 -5 369 303 113 22 chr6 39812458 39812828 -149466726 + L1MEd LINE L1 2139 2542 -3587 991 163 0 6 chr6 39812832 39812998 -149466556 + FRAM SINE Alu 1 165 -11 262 296 49 0 chr6 39813422 39813503 -149466051 - L2 LINE L2 -1 3312 3228 271 331 41 41 chr6 39813649 39813794 -149465760 + MER5A DNA MER1_type 20 164 -25 253 326 35 42 chr6 39813665 39813809 -149465745 - MER5A DNA MER1_type -28 161 19 * 203 0 0 36 chr6 39813915 39813943 -149465611 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 331 143 127 0 chr6 39813966 39814029 -149465525 - LTR33 LTR ERVL -364 157 87 26 30 0 0 chr6 39814185 39814218 -149465336 + AT_rich Low_complexity Low_complexity 1 33 0 198 245 19 19 chr6 39815431 39815484 -149464070 - MIR SINE MIR -135 73 21 221 218 19 100 chr6 39818325 39818385 -149461169 + MER5B DNA MER1_type 5 59 -130 1789 151 0 11 chr6 39818385 39818690 -149460864 + AluJo SINE Alu 1 302 0 221 218 19 100 chr6 39818690 39818756 -149460798 + MER5B DNA MER1_type 59 129 -60 2069 127 3 0 chr6 39818769 39819053 -149460501 - AluSc SINE Alu -24 285 1 2625 266 77 26 chr6 39820499 39821532 -149458022 - HAL1 LINE L1 0 2507 1422 2360 110 0 0 chr6 39821615 39821925 -149457629 - AluSx SINE Alu -2 310 1 372 285 71 36 chr6 39822001 39822254 -149457300 + L2 LINE L2 2925 3186 -86 418 308 138 0 chr6 39823139 39823334 -149456220 - MIR SINE MIR -38 224 3 190 347 76 21 chr6 39823563 39823707 -149455847 + L2 LINE L2 2741 2892 -422 193 293 0 0 chr6 39824443 39824501 -149455053 - MIR SINE MIR -15 247 190 2076 101 0 0 chr6 39824676 39824943 -149454611 - AluSg SINE Alu -9 301 35 538 221 75 122 chr6 39824992 39825108 -149454446 + L1MC4a LINE L1 5706 5826 -1982 1334 103 66 33 chr6 39825108 39825167 -149454387 + L1MA4A LINE L1 6053 6109 -194 275 0 0 28 chr6 39825167 39825203 -149454351 + (TA)n Simple_repeat Simple_repeat 2 36 0 1334 103 66 33 chr6 39825203 39825386 -149454168 + L1MA4A LINE L1 6109 6303 0 538 221 75 122 chr6 39825386 39825543 -149454011 + L1MC4a LINE L1 5826 5960 -1848 1773 186 3 0 chr6 39825543 39825828 -149453726 + AluJo SINE Alu 1 286 -26 538 221 75 122 chr6 39825828 39825915 -149453639 + L1MC4a LINE L1 5960 6050 -1758 917 181 0 92 chr6 39826098 39826355 -149453199 - AluJo SINE Alu 0 312 86 2153 125 0 6 chr6 39826520 39826832 -149452722 + AluSg SINE Alu 1 310 0 24 32 0 0 chr6 39826871 39826902 -149452652 + AT_rich Low_complexity Low_complexity 1 31 0 1269 268 39 8 chr6 39826938 39827300 -149452254 + L1MC4 LINE L1 6696 7068 -974 479 278 99 27 chr6 39827449 39828314 -149451240 + L1MC5 LINE L1 7102 7862 -99 1242 187 33 122 chr6 39828315 39828710 -149450844 - MSTD LTR MaLR 0 396 37 259 33 0 0 chr6 39828941 39828971 -149450583 - MSTD LTR MaLR -366 30 1 306 0 0 0 chr6 39829037 39829071 -149450483 + (TG)n Simple_repeat Simple_repeat 2 35 0 2357 95 0 0 chr6 39829165 39829461 -149450093 - AluSx SINE Alu -16 296 1 27 0 0 0 chr6 39829468 39829495 -149450059 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr6 39829515 39829536 -149450018 + AT_rich Low_complexity Low_complexity 1 21 0 200 271 0 0 chr6 39829798 39829868 -149449686 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 2744 42 0 0 chr6 39829963 39830274 -149449280 + AluY SINE Alu 1 311 0 688 206 36 0 chr6 39830771 39830936 -149448618 + L1 LINE L1 3289 3459 -2687 9380 182 15 27 chr6 39830936 39831611 -149447943 + L1 LINE L1 3381 4062 -2084 1895 133 0 59 chr6 39831611 39831933 -149447621 + AluSx SINE Alu 1 303 -9 9380 182 15 27 chr6 39831933 39832846 -149446708 + L1 LINE L1 4062 4944 -1202 2160 127 7 3 chr6 39832846 39833154 -149446400 + AluSg SINE Alu 1 309 -1 9380 182 15 27 chr6 39833154 39833581 -149445973 + L1 LINE L1 4944 5374 -772 367 379 0 0 chr6 39833688 39833804 -149445750 + polypurine Low_complexity Low_complexity 3 118 0 389 257 12 23 chr6 39833804 39833975 -149445579 + A-rich Low_complexity Low_complexity 3 171 0 240 269 0 30 chr6 39833976 39834043 -149445511 + GA-rich Low_complexity Low_complexity 1 65 0 511 311 54 31 chr6 39835401 39835752 -149443802 + L2 LINE L2 1746 2104 -1210 775 143 74 95 chr6 39836158 39836315 -149443239 - MER3 DNA MER1_type -24 185 31 2190 103 10 0 chr6 39836315 39836607 -149442947 - AluSg SINE Alu -15 295 1 775 143 74 95 chr6 39836607 39836638 -149442916 - MER3 DNA MER1_type -178 31 1 323 330 116 74 chr6 39836791 39837197 -149442357 + L2 LINE L2 2825 3247 -25 720 216 82 24 chr6 39837668 39837806 -149441748 - MIR SINE MIR -10 252 97 1542 207 61 13 chr6 39837806 39838010 -149441544 - MSTD LTR MaLR -1 395 202 2427 83 0 0 chr6 39838010 39838311 -149441243 - AluY SINE Alu -10 301 1 1542 207 61 13 chr6 39838311 39838483 -149441071 - MSTD LTR MaLR -194 202 1 720 216 82 24 chr6 39838483 39838552 -149441002 - MIR SINE MIR -165 97 33 520 184 29 10 chr6 39838885 39838988 -149440566 - Charlie4a DNA MER1_type 0 508 404 1169 103 143 36 chr6 39839007 39839231 -149440323 + MER44D DNA MER2_type 1 518 -91 925 194 112 40 chr6 39839321 39839599 -149439955 - Charlie4a DNA MER1_type -179 329 32 6789 132 24 17 chr6 39839605 39841638 -149437916 - L1MA4 LINE L1 0 6300 4256 232 230 230 37 chr6 39841667 39841802 -149437752 + L2 LINE L2 3152 3312 -1 * 311 218 39 13 chr6 39841800 39841878 -149437676 + MIR SINE MIR 106 185 -77 1999 129 0 39 chr6 39842118 39842428 -149437126 + AluSc SINE Alu 1 298 -11 208 300 89 11 chr6 39842738 39842828 -149436726 - L2 LINE L2 -190 3082 2986 246 334 116 36 chr6 39842881 39843270 -149436284 - L2 LINE L2 -568 2746 2327 358 269 75 50 chr6 39843488 39843770 -149435784 + L1MC5 LINE L1 7637 7925 -36 25 0 0 0 chr6 39843806 39843831 -149435723 + AT_rich Low_complexity Low_complexity 1 25 0 257 176 24 94 chr6 39844304 39844389 -149435165 + LTR67 LTR ERVL 458 536 -21 33 43 0 0 chr6 39844398 39844445 -149435109 + AT_rich Low_complexity Low_complexity 1 47 0 248 67 0 0 chr6 39844562 39844592 -149434962 + U6 snRNA snRNA 76 105 -2 602 282 92 32 chr6 39844629 39845030 -149434524 - L2 LINE L2 -996 2318 1894 2135 108 7 33 chr6 39845154 39845460 -149434094 - AluSg SINE Alu -12 298 1 954 172 17 17 chr6 39846137 39846311 -149433243 + MER58B DNA MER1_type 7 180 -161 191 319 17 25 chr6 39846311 39846430 -149433124 - L2 LINE L2 -1161 2153 2036 842 172 55 0 chr6 39846437 39846582 -149432972 + MER58B DNA MER1_type 189 341 0 906 171 73 6 chr6 39846914 39847078 -149432476 + FAM SINE Alu 1 175 0 358 315 84 11 chr6 39847183 39847456 -149432098 + L2 LINE L2 1723 2015 -1299 389 281 45 20 chr6 39847541 39847723 -149431831 + LTR33A LTR ERVL 1 160 -363 363 265 38 15 chr6 39848002 39848134 -149431420 + LTR33A LTR ERVL 380 514 -9 514 347 68 20 chr6 39848178 39848636 -149430918 + L2 LINE L2 2139 2618 -696 196 313 116 27 chr6 39848730 39848877 -149430677 + L2 LINE L2 2661 2820 -494 233 358 57 24 chr6 39849225 39849348 -149430206 + L2 LINE L2 3142 3268 -4 412 246 172 0 chr6 39850101 39850235 -149429319 - MIR SINE MIR -54 208 52 531 326 101 0 chr6 39850707 39850885 -149428669 - MER91A DNA MER1_type 0 196 1 22 25 0 25 chr6 39850895 39850922 -149428632 + AT_rich Low_complexity Low_complexity 1 28 -11 2308 103 0 6 chr6 39850922 39851233 -149428321 - AluSx SINE Alu -3 309 1 22 25 0 25 chr6 39851233 39851245 -149428309 + AT_rich Low_complexity Low_complexity 28 39 0 2003 136 7 3 chr6 39851245 39851532 -149428022 - AluJo SINE Alu -24 288 1 2070 119 20 3 chr6 39851712 39852005 -149427549 - AluSg SINE Alu -12 298 1 203 216 20 20 chr6 39852535 39852586 -149426968 + L2 LINE L2 3263 3313 0 234 91 0 0 chr6 39853935 39853968 -149425586 + (GGA)n Simple_repeat Simple_repeat 1 33 0 463 252 41 27 chr6 39855122 39855269 -149424285 + MIR SINE MIR 16 164 -98 323 241 62 45 chr6 39855269 39855381 -149424173 + L1M4 LINE L1 5443 5556 -618 334 221 0 26 chr6 39855460 39855537 -149424017 + MIR SINE MIR 173 247 -15 531 178 0 10 chr6 39855793 39855894 -149423660 + MIR3 SINE MIR 81 180 -28 488 280 63 62 chr6 39856304 39856897 -149422657 - L1P4 LINE L1 -600 5561 4336 357 315 10 0 chr6 39856897 39857016 -149422538 + MIR SINE MIR 30 148 -62 208 237 0 0 chr6 39858818 39858856 -149420698 + (TG)n Simple_repeat Simple_repeat 2 39 0 2488 73 7 0 chr6 39858951 39859253 -149420301 - AluSx SINE Alu -8 304 1 1895 140 13 48 chr6 39859801 39860115 -149419439 + AluSx SINE Alu 1 303 -9 5714 111 2 4 chr6 39860143 39860947 -149418607 + L1PA15 LINE L1 5357 6159 -6 24 0 0 0 chr6 39860947 39860971 -149418583 + AT_rich Low_complexity Low_complexity 1 24 0 454 297 101 0 chr6 39862289 39862427 -149417127 + L2 LINE L2 3117 3268 -4 1213 246 51 37 chr6 39862788 39863142 -149416412 - MER21B LTR ERV1 -51 812 454 1146 124 88 0 chr6 39863142 39863336 -149416218 - L1MA5A LINE L1 -19 6278 6068 1448 221 119 29 chr6 39863352 39863773 -149415781 - MER21B LTR ERV1 -382 481 23 231 74 74 0 chr6 39863809 39863863 -149415691 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 184 279 59 0 chr6 39864495 39864563 -149414991 - MER5B DNA MER1_type -80 98 27 391 277 20 54 chr6 39864650 39864798 -149414756 + MER5A DNA MER1_type 1 143 -46 442 208 17 42 chr6 39868527 39868647 -149410907 + MIR SINE MIR 142 258 -4 537 297 18 6 chr6 39868809 39868974 -149410580 - MIR SINE MIR -10 252 86 201 138 35 35 chr6 39869397 39869455 -149410099 + T-rich Low_complexity Low_complexity 4 61 0 2297 106 3 6 chr6 39869547 39869859 -149409695 - AluSq SINE Alu -2 311 1 261 0 0 0 chr6 39870290 39870319 -149409235 + (TG)n Simple_repeat Simple_repeat 1 29 0 302 241 28 0 chr6 39870334 39870479 -149409075 + GA-rich Low_complexity Low_complexity 1 149 0 259 259 17 0 chr6 39870561 39870619 -149408935 - L3 LINE CR1 -16 1561 1503 460 301 78 25 chr6 39871298 39871726 -149407828 - LTR33 LTR ERVL -8 513 12 490 329 48 28 chr6 39871905 39872194 -149407360 - L1M4 LINE L1 -1534 4612 4318 3570 167 18 6 chr6 39872198 39872864 -149406690 - L1MB2 LINE L1 -7 6164 5491 409 151 0 21 chr6 39872865 39872958 -149406596 + CT-rich Low_complexity Low_complexity 3 93 0 856 198 42 18 chr6 39872958 39873217 -149406337 - L1MB2 LINE L1 -682 5489 5225 422 329 132 17 chr6 39873234 39873313 -149406241 - L1M4 LINE L1 -1805 4341 4272 210 118 0 0 chr6 39873313 39873347 -149406207 + (TTG)n Simple_repeat Simple_repeat 1 34 0 422 329 132 17 chr6 39873347 39873556 -149405998 - L1M4 LINE L1 -1874 4272 4020 4126 156 67 48 chr6 39873557 39874259 -149405295 - L1MD1 LINE L1 -30 6606 5919 2445 74 0 0 chr6 39874259 39874557 -149404997 - AluY SINE Alu -13 298 1 4126 156 67 48 chr6 39874557 39874755 -149404799 - L1MD1 LINE L1 -717 5919 5726 1627 126 152 4 chr6 39874755 39875018 -149404536 - AluSx SINE Alu 0 302 1 4126 156 67 48 chr6 39875018 39875340 -149404214 - L1MD1 LINE L1 -910 5726 5360 306 148 23 45 chr6 39875481 39875569 -149403985 - L1MD1 LINE L1 -2868 3672 3587 1841 149 0 4 chr6 39875569 39875844 -149403710 - AluSx SINE Alu -38 274 1 232 219 96 0 chr6 39875844 39875917 -149403637 - L1MD1 LINE L1 -3020 3520 3441 669 88 0 39 chr6 39875923 39876025 -149403529 - FLAM_A SINE Alu -12 130 33 354 179 0 0 chr6 39876032 39876110 -149403444 - L1MD1 LINE L1 -3106 3434 3357 6773 97 11 18 chr6 39876128 39876954 -149402600 - L1MA1 LINE L1 -7 6295 5477 2231 107 0 0 chr6 39876954 39877245 -149402309 - AluSx SINE Alu -21 291 1 6773 97 11 18 chr6 39877245 39877526 -149402028 - L1MA1 LINE L1 -825 5477 5196 940 199 45 14 chr6 39877530 39877816 -149401738 - L1MD1 LINE L1 -3177 3363 3069 * 3726 136 57 25 chr6 39877790 39878479 -149401075 + L1PA15 LINE L1 5342 6052 -113 1551 206 22 96 chr6 39878493 39878788 -149400766 - L1M4 LINE L1 -3311 2835 2612 2376 68 3 10 chr6 39878788 39879099 -149400455 - AluY SINE Alu -2 309 1 1551 206 22 96 chr6 39879099 39879447 -149400107 - L1M4 LINE L1 -3534 2612 2240 1853 144 44 13 chr6 39879459 39879757 -149399797 - AluSx SINE Alu -5 307 1 249 109 0 0 chr6 39879780 39879826 -149399728 + (T)n Simple_repeat Simple_repeat 1 46 0 241 158 0 0 chr6 39879830 39879868 -149399686 - Alu SINE Alu -262 38 1 729 199 6 0 chr6 39879939 39880095 -149399459 - L1MA3 LINE L1 -2 6303 6147 980 197 35 102 chr6 39880109 39880480 -149399074 - MLT1A2 LTR MaLR -11 363 18 2153 141 72 27 chr6 39880500 39881011 -149398543 - L1MD1 LINE L1 -4019 2521 1988 2405 204 29 50 chr6 39881047 39881629 -149397925 - L1MD1 LINE L1 -5945 595 26 314 304 45 24 chr6 39881642 39881977 -149397577 - L1MEd LINE L1 -2143 3986 3645 519 264 89 13 chr6 39882054 39882368 -149397186 - L1MEd LINE L1 -2929 3200 2863 299 171 198 36 chr6 39882383 39882494 -149397060 - L1MC4 LINE L1 0 8042 7914 739 239 42 35 chr6 39882629 39882918 -149396636 - L1MC4 LINE L1 -167 7875 7585 349 304 0 6 chr6 39883009 39883170 -149396384 - L1MEd LINE L1 -3562 2567 2408 2348 109 0 6 chr6 39883217 39883530 -149396024 - AluSq SINE Alu -2 311 1 1961 137 3 3 chr6 39883563 39883899 -149395655 + AluSq SINE Alu 1 336 0 2127 105 7 24 chr6 39883906 39884202 -149395352 + AluSx SINE Alu 1 291 -21 7290 167 21 0 chr6 39884342 39885051 -149394503 + L1PA13 LINE L1 3943 4635 -1528 2120 95 3 14 chr6 39885051 39885347 -149394207 - AluSp SINE Alu -20 293 1 7290 167 21 0 chr6 39885347 39886847 -149392707 + L1PA13 LINE L1 4635 6158 -5 198 0 0 0 chr6 39887357 39887379 -149392175 + (T)n Simple_repeat Simple_repeat 1 22 0 296 325 63 0 chr6 39887418 39887609 -149391945 - HAL1 LINE L1 -854 1653 1451 1421 99 59 36 chr6 39887639 39887861 -149391693 - AluSx SINE Alu -83 229 3 455 327 101 31 chr6 39887999 39888357 -149391197 - L1MEd LINE L1 -4921 1198 816 234 0 0 0 chr6 39890173 39890199 -149389355 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 440 296 51 34 chr6 39891733 39891909 -149387645 + MER5A DNA MER1_type 8 186 -3 2354 93 0 0 chr6 39892139 39892440 -149387114 - AluSg SINE Alu -9 301 1 365 253 11 0 chr6 39892868 39892955 -149386599 - Charlie7 DNA MER1_type -2520 92 5 290 400 19 0 chr6 39893490 39893595 -149385959 + L2 LINE L2 3149 3255 -17 296 330 26 35 chr6 39893794 39893909 -149385645 - MIR3 SINE MIR -27 181 68 369 0 0 0 chr6 39894415 39894456 -149385098 + (TA)n Simple_repeat Simple_repeat 2 42 0 464 353 55 48 chr6 39894696 39895096 -149384458 - L1ME3A LINE L1 -300 5870 5468 282 289 13 13 chr6 39895105 39895254 -149384300 - L1ME3A LINE L1 -1088 5058 4910 5222 170 57 46 chr6 39895266 39897175 -149382379 + Charlie1 DNA MER1_type 1 2056 -705 1598 189 3 17 chr6 39897175 39897466 -149382088 - AluJo SINE Alu -23 289 3 5222 170 57 46 chr6 39897466 39897617 -149381937 + Charlie1 DNA MER1_type 2056 2204 -557 1700 160 35 0 chr6 39897916 39898204 -149381350 - AluJb SINE Alu -14 298 1 276 338 39 32 chr6 39898254 39898408 -149381146 + L2 LINE L2 2919 3073 -199 1038 167 142 50 chr6 39899136 39899417 -149380137 + MER44D DNA MER2_type 14 590 -19 1067 199 109 23 chr6 39899471 39899791 -149379763 - MSTD LTR MaLR 0 396 1 2659 105 55 36 chr6 39900986 39901462 -149378092 - L1MC2 LINE L1 -13 6331 5847 734 179 0 82 chr6 39901462 39901646 -149377908 + MER20 DNA MER1_type 51 219 0 * 5337 212 68 100 chr6 39901646 39901843 -149377711 + Charlie2b DNA MER1_type 407 609 -2253 665 191 0 59 chr6 39901843 39901979 -149377575 - FLAM_A SINE Alu -1 132 5 5337 212 68 100 chr6 39901979 39902247 -149377307 + Charlie2b DNA MER1_type 609 884 -1978 407 162 14 0 chr6 39902247 39902321 -149377233 - AluJ/FLAM SINE Alu -237 75 1 5337 212 68 100 chr6 39902321 39903664 -149375890 + Charlie2b DNA MER1_type 884 2268 -594 1614 160 132 0 chr6 39903664 39903983 -149375571 + MER46B DNA MER2_type 1 236 0 5337 212 68 100 chr6 39903983 39904038 -149375516 + Charlie2b DNA MER1_type 2268 2323 -539 1950 137 7 14 chr6 39904038 39904330 -149375224 - AluJb SINE Alu -22 290 1 5337 212 68 100 chr6 39904330 39904821 -149374733 + Charlie2b DNA MER1_type 2323 2759 -23 559 193 76 10 chr6 39906821 39907089 -149372465 - MER69 DNA AcHobo -1696 830 505 203 308 0 31 chr6 39908784 39908849 -149370705 + G-rich Low_complexity Low_complexity 3 65 0 2055 114 0 0 chr6 39909260 39909549 -149370005 - AluSx SINE Alu -18 294 6 453 198 0 41 chr6 39909743 39909864 -149369690 - MER112 DNA MER1_type -78 182 67 2578 127 18 34 chr6 39910927 39911151 -149368403 + Tigger2a DNA MER2_type 1 216 -2492 1815 151 24 0 chr6 39911151 39911442 -149368112 - AluJo SINE Alu -14 298 1 2578 127 18 34 chr6 39911442 39911658 -149367896 + Tigger2a DNA MER2_type 216 434 0 440 272 124 56 chr6 39911658 39912466 -149367088 + L1ME3 LINE L1 4411 5273 -873 912 305 37 16 chr6 39912467 39913056 -149366498 + L1ME3 LINE L1 5305 5905 -257 254 28 0 28 chr6 39913730 39913766 -149365788 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 472 68 14 14 chr6 39915646 39915720 -149363834 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2404 65 0 3 chr6 39916167 39916460 -149363094 + AluY SINE Alu 1 292 -19 749 159 43 7 chr6 39916783 39916921 -149362633 + FLAM_C SINE Alu 1 143 0 948 195 0 0 chr6 39916936 39917116 -149362438 + AluJb SINE Alu 129 308 0 611 266 114 6 chr6 39917699 39918083 -149361471 - LTR16C LTR ERVL -4 487 37 1882 164 43 8 chr6 39918329 39918701 -149360853 - MLT1B LTR MaLR 0 390 6 1322 158 23 83 chr6 39919025 39919373 -149360181 - L1MD1 LINE L1 0 6242 5916 2145 123 10 0 chr6 39919401 39919709 -149359845 - AluSx SINE Alu -1 311 1 434 216 43 0 chr6 39919713 39919829 -149359725 - L1MDa LINE L1 -1031 5509 5389 * 522 167 0 0 chr6 39919828 39919918 -149359636 - AluJ/FRAM SINE Alu -3 309 220 3405 150 26 86 chr6 39919918 39920397 -149359157 - L1MD1 LINE L1 -336 5906 5400 2246 108 7 0 chr6 39920397 39920693 -149358861 - AluSp SINE Alu -15 298 1 3405 150 26 86 chr6 39920693 39921243 -149358311 - L1MD1 LINE L1 -842 5400 4932 1514 151 8 4 chr6 39921243 39921482 -149358072 - AluJo SINE Alu -15 297 58 1074 222 6 88 chr6 39921482 39921834 -149357720 - L1MDa LINE L1 -1145 5395 5073 2663 39 0 10 chr6 39923199 39923507 -149356047 + AluY SINE Alu 7 311 0 29 0 0 0 chr6 39923701 39923730 -149355824 + AT_rich Low_complexity Low_complexity 1 29 0 495 56 0 0 chr6 39924157 39924229 -149355325 + Alu SINE Alu 241 312 0 8307 202 72 59 chr6 39926152 39926482 -149353072 - L1MDa LINE L1 -1455 5085 4761 2610 49 20 0 chr6 39926482 39926787 -149352767 + AluY SINE Alu 1 311 0 8307 202 72 59 chr6 39926787 39928099 -149351455 - L1MDa LINE L1 -1779 4761 3467 5818 62 8 0 chr6 39928099 39928828 -149350726 + L1PA10 LINE L1 5417 6151 -17 8307 202 72 59 chr6 39928828 39929145 -149350409 - L1MDa LINE L1 -3073 3467 3155 2199 112 30 7 chr6 39929145 39929267 -149350287 + AluSq SINE Alu 1 119 -194 351 0 0 0 chr6 39929267 39929306 -149350248 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2199 112 30 7 chr6 39929306 39929478 -149350076 + AluSq SINE Alu 119 302 -11 2665 66 28 0 chr6 39929488 39929850 -149349704 + L1PA13 LINE L1 5792 6163 0 8307 202 72 59 chr6 39929850 39930352 -149349202 - L1MDa LINE L1 -3393 3147 2653 2164 96 10 36 chr6 39930352 39930655 -149348899 - AluSc SINE Alu -13 296 2 8307 202 72 59 chr6 39930655 39932823 -149346731 - L1MDa LINE L1 -3887 2653 379 1322 167 9 17 chr6 39932823 39933056 -149346498 - AluJo SINE Alu -40 272 42 568 206 46 0 chr6 39933061 39933192 -149346362 - Charlie2 DNA MER1_type -871 1991 1855 495 207 117 27 chr6 39934896 39935084 -149344470 + LTR37B LTR ERV1 199 403 -65 192 77 0 0 chr6 39935327 39935353 -149344201 + (A)n Simple_repeat Simple_repeat 1 26 0 565 267 67 33 chr6 39935471 39935651 -149343903 - LTR67 LTR ERVL -366 191 6 438 192 0 64 chr6 39935711 39935824 -149343730 + MLT1H1 LTR MaLR 437 555 0 531 232 30 24 chr6 39935824 39935992 -149343562 - L1ME3 LINE L1 -251 5911 5743 514 281 15 10 chr6 39935989 39936185 -149343369 - L1MC4 LINE L1 -144 7898 7702 * 278 161 177 16 chr6 39936191 39936253 -149343301 + MLT1F1 LTR MaLR 495 566 -1 253 296 60 55 chr6 39936333 39936532 -149343022 - HERV16 LTR ERVL -4422 574 375 2616 129 43 0 chr6 39936839 39937235 -149342319 + MLT2D LTR ERVL 2 414 0 1112 159 14 59 chr6 39937927 39938147 -149341407 - AluJo SINE Alu -16 296 87 287 293 93 46 chr6 39938203 39938462 -149341092 - L1M4 LINE L1 -2095 4051 3781 195 139 0 0 chr6 39938462 39938498 -149341056 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1664 135 0 39 chr6 39938503 39938762 -149340792 - AluJo SINE Alu -24 288 40 1034 284 39 46 chr6 39938762 39939550 -149340004 - L1M4 LINE L1 -2359 3787 3005 557 211 0 0 chr6 39939629 39939733 -149339821 - AluJb SINE Alu -19 293 190 1854 154 43 0 chr6 39939858 39940157 -149339397 - AluJb SINE Alu 0 312 1 444 235 97 77 chr6 39940398 39940594 -149338960 + MER63A DNA MER1_type 10 209 -1 2293 84 27 3 chr6 39940815 39941113 -149338441 - AluSq SINE Alu -8 305 1 443 280 58 78 chr6 39941132 39941578 -149337976 - L1ME LINE L1 -5583 487 51 200 261 77 0 chr6 39941778 39941843 -149337711 - MIR3 SINE MIR -12 196 127 270 292 133 9 chr6 39942054 39942167 -149337387 + MIR SINE MIR 48 174 -88 2026 134 3 7 chr6 39942185 39942483 -149337071 - AluJo SINE Alu 0 312 16 381 272 152 38 chr6 39943348 39943532 -149336022 + MER63A DNA MER1_type 2 206 -4 1803 162 0 53 chr6 39943547 39943868 -149335686 - AluJb SINE Alu -7 305 2 268 278 0 111 chr6 39943886 39944030 -149335524 - MER94 DNA DNA -4 130 3 267 177 32 0 chr6 39945024 39945086 -149334468 - MIR SINE MIR -79 183 120 2139 122 10 3 chr6 39945400 39945703 -149333851 - AluSx SINE Alu -7 305 1 293 192 192 8 chr6 39946493 39946613 -149332941 - MIR3 SINE MIR -4 204 63 465 241 154 25 chr6 39947255 39947417 -149332137 - MIR3 SINE MIR -24 184 2 294 87 0 0 chr6 39950648 39950694 -149328860 + (TC)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr6 39950694 39950714 -149328840 + (CA)n Simple_repeat Simple_repeat 1 20 0 441 219 48 70 chr6 39950831 39951018 -149328536 - MIR3 SINE MIR -5 203 21 231 114 0 0 chr6 39952815 39952850 -149326704 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2309 64 0 34 chr6 39952866 39953162 -149326392 - AluY SINE Alu -25 286 1 227 264 0 0 chr6 39955318 39955371 -149324183 + (TG)n Simple_repeat Simple_repeat 1 53 0 1959 162 10 0 chr6 39955776 39956084 -149323470 - AluJb SINE Alu -1 311 1 914 126 0 0 chr6 39956155 39956282 -149323272 - FLAM_C SINE Alu -16 127 1 506 288 34 39 chr6 39956318 39956523 -149323031 - MIR SINE MIR -56 206 3 272 285 109 0 chr6 39959104 39959252 -149320302 + MIR SINE MIR 44 205 -57 1695 100 0 0 chr6 39961164 39961384 -149318170 + AluSg/x SINE Alu 81 300 -12 2425 68 0 3 chr6 39963201 39963497 -149316057 - AluSq SINE Alu -18 295 1 22 0 0 0 chr6 39964137 39964159 -149315395 + AT_rich Low_complexity Low_complexity 1 22 0 332 164 0 60 chr6 39965637 39965704 -149313850 + MER96 DNA MER1_type? 2 64 -111 2160 145 31 0 chr6 39965825 39966149 -149313405 + MER7A DNA MER2_type 1 332 -14 297 170 19 0 chr6 39967596 39967649 -149311905 - L1M3 LINE L1 -376 5795 5742 5177 164 40 19 chr6 39967943 39968543 -149311011 - L1MB3 LINE L1 0 6183 5597 2197 130 72 20 chr6 39968543 39968889 -149310665 - THE1B LTR MaLR 0 364 1 5177 164 40 19 chr6 39968889 39969472 -149310082 - L1MB3 LINE L1 -586 5597 4986 1355 202 27 60 chr6 39970419 39970865 -149308689 - L1MC5 LINE L1 -48 7913 7483 180 77 0 0 chr6 39970865 39970891 -149308663 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 1493 212 57 46 chr6 39970915 39971372 -149308182 - L1MC5 LINE L1 -488 7473 7012 300 360 64 23 chr6 39971411 39971583 -149307971 - L2 LINE L2 -15 3257 3079 257 23 0 70 chr6 39973911 39973954 -149305600 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 421 244 53 8 chr6 39974072 39974203 -149305351 - L1ME4a LINE L1 -23 6098 5962 894 239 74 8 chr6 39974361 39974604 -149304950 - MIR SINE MIR -2 260 2 260 327 94 78 chr6 39974767 39975128 -149304426 + L2 LINE L2 2906 3272 0 193 220 294 28 chr6 39975655 39975764 -149303790 - MIR3 SINE MIR -10 198 61 449 299 43 27 chr6 39976471 39976658 -149302896 - MIR SINE MIR -7 255 66 317 235 12 0 chr6 39976660 39976741 -149302813 + L2 LINE L2 1756 1837 -1477 247 260 40 30 chr6 39976744 39976844 -149302710 - L1MC4a LINE L1 -1633 6175 6075 22 0 0 0 chr6 39976999 39977021 -149302533 + AT_rich Low_complexity Low_complexity 1 22 0 885 285 90 11 chr6 39977021 39977308 -149302246 - L1ME4a LINE L1 -1996 5812 5486 369 0 0 0 chr6 39977308 39977349 -149302205 + (TA)n Simple_repeat Simple_repeat 1 41 0 885 285 90 11 chr6 39977349 39977440 -149302114 - L1ME4a LINE L1 -2322 5486 5404 24 67 0 0 chr6 39977813 39977858 -149301696 + AT_rich Low_complexity Low_complexity 1 45 0 276 309 104 30 chr6 39977944 39978378 -149301176 + L1M4 LINE L1 2135 2600 -3546 216 0 0 0 chr6 39979022 39979046 -149300508 + (A)n Simple_repeat Simple_repeat 1 24 0 2270 113 0 0 chr6 39979257 39979557 -149299997 + AluSx SINE Alu 1 300 -12 1831 139 33 0 chr6 39979644 39979942 -149299612 + AluJo SINE Alu 1 307 0 324 279 75 0 chr6 39979975 39980136 -149299418 + L1P LINE L1 3634 3806 -2340 337 212 162 10 chr6 39981554 39981653 -149297901 + MIR SINE MIR 72 185 -77 629 181 32 0 chr6 39983194 39983323 -149296231 - MLT1A1 LTR MaLR 0 457 236 204 40 0 0 chr6 39983671 39983696 -149295858 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1386 207 4 22 chr6 39983696 39983971 -149295583 - AluJo SINE Alu -32 280 11 776 173 73 0 chr6 39983980 39984130 -149295424 - MLT1A1 LTR MaLR -204 161 1 1831 139 24 0 chr6 39984250 39984544 -149295010 - L1MA6 LINE L1 -224 6076 5776 729 109 0 0 chr6 39984544 39984643 -149294911 + L1MA6 LINE L1 6195 6295 -5 625 151 63 32 chr6 39985879 39986005 -149293549 - LTR42 LTR ERVL -340 155 26 208 328 17 0 chr6 39986659 39986717 -149292837 + L2 LINE L2 3001 3059 -213 228 270 113 50 chr6 39989688 39989847 -149289707 - L1ME3A LINE L1 -37 6133 5965 1497 196 43 96 chr6 39989917 39990428 -149289126 - L1MC5 LINE L1 -436 7525 7042 1390 97 0 5 chr6 39990429 39990614 -149288940 + AluSc SINE Alu 106 289 -20 5517 206 46 24 chr6 39991006 39992374 -149287180 + Charlie1a DNA MER1_type 3 1439 -16 1768 205 55 3 chr6 39992452 39992799 -149286755 - MLT1A1 LTR MaLR 0 365 1 327 320 128 27 chr6 39992812 39993031 -149286523 - L1M4c LINE L1 -4732 1652 1412 18489 190 30 15 chr6 39993038 39995763 -149283791 + L1PA13 LINE L1 1 2683 -4114 2877 10 0 0 chr6 39995763 39996073 -149283481 + AluYa5 SINE Alu 1 310 -1 18489 190 30 15 chr6 39996073 39997421 -149282133 + L1PA13 LINE L1 2683 4189 -2608 230 0 33 0 chr6 39997421 39997451 -149282103 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 18489 190 30 15 chr6 39997451 39998600 -149280954 + L1PA13 LINE L1 4189 5319 -1478 2387 176 71 6 chr6 39998589 39999429 -149280125 + L1MD1 LINE L1 5350 6239 -3 * 493 215 96 7 chr6 39999525 39999660 -149279894 - L1M4 LINE L1 -1008 5138 4992 * 1122 205 54 8 chr6 39999654 39999913 -149279641 - L1M4 LINE L1 -1946 4200 3930 2295 103 0 3 chr6 40000973 40001274 -149278280 + AluY SINE Alu 12 311 0 42 48 0 0 chr6 40001287 40001350 -149278204 + AT_rich Low_complexity Low_complexity 1 63 0 1042 218 159 37 chr6 40001382 40001708 -149277846 + Tigger5 DNA MER2_type 1 2323 0 366 366 0 7 chr6 40001788 40001930 -149277624 - MIR SINE MIR -114 148 8 2208 183 58 44 chr6 40001944 40002053 -149277501 - MLT1D LTR MaLR 0 505 399 1202 261 101 10 chr6 40002053 40002451 -149277103 + MER57B LTR ERV1 1 434 0 2208 183 58 44 chr6 40002451 40002839 -149276715 - MLT1D LTR MaLR -106 399 1 346 347 66 26 chr6 40002960 40003338 -149276216 + L2 LINE L2 2459 2851 -463 218 289 60 12 chr6 40004794 40004877 -149274677 + MIR SINE MIR 1 87 -175 691 167 42 22 chr6 40004907 40005122 -149274432 - AluJb SINE Alu -18 294 4 192 238 0 0 chr6 40005132 40005174 -149274380 + MIR SINE MIR 205 246 -16 25 0 0 0 chr6 40005174 40005199 -149274355 + AT_rich Low_complexity Low_complexity 1 25 0 1617 98 129 20 chr6 40005329 40005614 -149273940 + AluSx SINE Alu 1 313 0 248 226 98 98 chr6 40005775 40005939 -149273615 - L1MCc LINE L1 -5997 426 263 258 300 50 17 chr6 40006018 40006138 -149273416 - L1MCc LINE L1 -6283 140 17 3960 188 71 25 chr6 40008356 40009132 -149270422 + MER21B LTR ERV1 1 812 -51 675 163 0 67 chr6 40009202 40009337 -149270217 + FLAM_C SINE Alu 12 137 -6 1754 151 24 17 chr6 40010448 40010740 -149268814 - AluJo SINE Alu -18 294 1 381 284 115 0 chr6 40011034 40011182 -149268372 + L2 LINE L2 2825 2989 -324 275 317 41 16 chr6 40011205 40011328 -149268226 + L2 LINE L2 3179 3304 -9 352 235 107 7 chr6 40012190 40012339 -149267215 + MIR SINE MIR 74 237 -25 33 41 0 41 chr6 40012376 40012415 -149267139 + AT_rich Low_complexity Low_complexity 1 37 -33 6436 69 17 4 chr6 40012415 40014201 -149265353 - L1PA11 LINE L1 -5 6169 4368 33 41 0 41 chr6 40014201 40014234 -149265320 + AT_rich Low_complexity Low_complexity 37 70 0 194 330 70 35 chr6 40014604 40014719 -149264835 - MIR SINE MIR -60 202 84 1146 66 0 0 chr6 40015087 40015223 -149264331 - AluSq/x SINE Alu -177 136 1 225 220 9 73 chr6 40016381 40016490 -149263064 + L1MCa LINE L1 1400 1501 -4925 247 213 180 7 chr6 40016596 40016746 -149262808 + L1M4 LINE L1 5224 5399 -747 389 250 87 72 chr6 40017112 40017320 -149262234 - L2 LINE L2 0 3313 3103 365 262 37 30 chr6 40018296 40018460 -149261094 + L1MCa LINE L1 2428 2592 -3834 4155 207 5 18 chr6 40018520 40019370 -149260184 - L1P LINE L1 -3848 2298 1460 4540 93 10 0 chr6 40019370 40019971 -149259583 + L1PA13 LINE L1 5557 6163 0 882 125 0 0 chr6 40020061 40020181 -149259373 - MSTB LTR MaLR -299 127 8 692 225 19 43 chr6 40020191 40020400 -149259154 + L1MDa LINE L1 2190 2393 -4147 1367 203 152 51 chr6 40020926 40021315 -149258239 + MSTC LTR MaLR 1 428 0 4837 238 98 51 chr6 40021317 40022392 -149257162 + MSTC-int LTR MaLR 2 1184 -551 8245 60 2 0 chr6 40022392 40023359 -149256195 + LTR5 LTR ERVK 1 969 0 4837 238 98 51 chr6 40023359 40023939 -149255615 + MSTC-int LTR MaLR 1184 1735 0 1410 191 116 40 chr6 40023939 40024337 -149255217 + MSTC LTR MaLR 1 428 0 2078 106 0 7 chr6 40024363 40024638 -149254916 + AluSx SINE Alu 26 298 -14 341 250 75 8 chr6 40025095 40025215 -149254339 + MLT1E3-int LTR MaLR 1603 1730 -5 1796 200 154 85 chr6 40025231 40025326 -149254228 + MLT1E3 LTR MaLR 4 91 -533 3031 108 43 79 chr6 40025326 40025856 -149253698 - MER9 LTR ERVK 0 511 1 1796 200 154 85 chr6 40025856 40026369 -149253185 + MLT1E3 LTR MaLR 91 624 0 27 49 0 0 chr6 40026547 40026588 -149252966 + AT_rich Low_complexity Low_complexity 1 41 0 1847 118 17 3 chr6 40026588 40026885 -149252669 - LTR43 LTR ERV1 0 602 302 1579 125 30 106 chr6 40027583 40027950 -149251604 + MER44D DNA MER2_type 1 609 0 292 315 31 31 chr6 40029200 40029362 -149250192 - MLT1J2 LTR MaLR 0 450 289 1398 166 107 75 chr6 40029975 40030267 -149249287 + MER4A LTR ERV1 1 182 -283 2178 114 0 25 chr6 40030267 40030582 -149248972 - AluSx SINE Alu -5 307 1 1398 166 107 75 chr6 40030582 40030854 -149248700 + MER4A LTR ERV1 182 444 -21 1508 168 9 87 chr6 40031002 40031336 -149248218 + MER70B LTR ERVL 271 578 0 649 273 40 4 chr6 40031338 40031591 -149247963 + L1MCa LINE L1 932 1193 -5233 1213 205 51 18 chr6 40031608 40031912 -149247642 + AluJo SINE Alu 2 314 0 310 250 11 23 chr6 40031937 40032025 -149247529 - L1MCa LINE L1 -5202 1224 1138 680 175 24 36 chr6 40032080 40032246 -149247308 - L1MD2 LINE L1 -13 6346 6183 1365 184 13 10 chr6 40032248 40032552 -149247002 + L1M4 LINE L1 4862 5166 -980 1544 138 0 46 chr6 40032552 40032835 -149246719 + L1PB3 LINE L1 5882 6151 -3 25 0 0 0 chr6 40032835 40032860 -149246694 + AT_rich Low_complexity Low_complexity 1 25 0 460 319 43 0 chr6 40032860 40032998 -149246556 - MIR SINE MIR -15 247 104 235 186 0 0 chr6 40033027 40033070 -149246484 - L2 LINE L2 -661 2653 2611 858 198 68 38 chr6 40033143 40033458 -149246096 + MER4C LTR ERV1 276 465 0 1107 120 83 26 chr6 40133495 40133687 -149145867 - AluSx SINE Alu -109 203 1 765 196 0 0 chr6 40133693 40133826 -149145728 - FLAM_C SINE Alu 0 133 1 859 138 172 119 chr6 40133846 40134070 -149145484 - L1MA7 LINE L1 -2 6289 6038 1685 165 39 0 chr6 40134070 40134355 -149145199 + AluJo SINE Alu 1 296 -16 859 138 172 119 chr6 40134355 40134484 -149145070 - L1MA7 LINE L1 -253 6038 5917 1787 74 0 29 chr6 40134492 40134736 -149144818 + AluY SINE Alu 64 300 -11 1703 153 0 0 chr6 40135165 40135426 -149144128 + AluSx SINE Alu 36 296 -16 577 122 12 0 chr6 40136158 40136240 -149143314 + AluJ/FLAM SINE Alu 2 84 -228 319 325 73 7 chr6 40136292 40136443 -149143111 + MIR3 SINE MIR 21 181 -27 2039 115 11 0 chr6 40136956 40137243 -149142311 - AluSx SINE Alu -22 290 1 2237 70 10 10 chr6 40137848 40138170 -149141384 + AluY SINE Alu 1 311 0 1925 132 0 38 chr6 40138216 40138534 -149141020 + AluSx SINE Alu 1 306 -6 2178 82 0 0 chr6 40138570 40138850 -149140704 + AluSq SINE Alu 1 280 -33 396 0 0 0 chr6 40138850 40138894 -149140660 + (CA)n Simple_repeat Simple_repeat 1 44 0 844 150 0 0 chr6 40139078 40139205 -149140349 + FLAM_C SINE Alu 1 127 -16 1978 151 0 0 chr6 40139222 40139527 -149140027 + AluSx SINE Alu 1 305 -7 1838 105 124 0 chr6 40139565 40139831 -149139723 + AluSg SINE Alu 2 300 0 2274 98 3 0 chr6 40139846 40140152 -149139402 + AluSc SINE Alu 1 307 -2 2099 102 17 0 chr6 40141139 40141433 -149138121 - AluSx SINE Alu -13 299 1 379 220 38 30 chr6 40141466 40141546 -149138008 - L1MC5 LINE L1 -58 7903 7820 2209 125 0 0 chr6 40141546 40141858 -149137696 - AluSx SINE Alu 0 312 1 379 220 38 30 chr6 40141858 40141909 -149137645 - L1MC5 LINE L1 -141 7820 7771 838 256 11 5 chr6 40141913 40142104 -149137450 - AluJo SINE Alu -5 307 116 264 156 0 0 chr6 40142104 40142149 -149137405 - L1MC5 LINE L1 -194 7767 7723 2289 87 0 7 chr6 40142151 40142460 -149137094 - AluSc SINE Alu -2 307 1 340 197 0 0 chr6 40142568 40142629 -149136925 - AluS SINE Alu -239 61 1 2011 124 3 0 chr6 40142655 40142946 -149136608 + AluSg SINE Alu 1 292 -18 1214 218 66 3 chr6 40143286 40143575 -149135979 + AluJo SINE Alu 1 307 -5 365 213 88 17 chr6 40143609 40143713 -149135841 + MER5A DNA MER1_type 69 186 -3 2033 130 0 0 chr6 40143839 40144132 -149135422 + AluSg SINE Alu 1 293 -17 1878 149 7 0 chr6 40144185 40144481 -149135073 + AluSx SINE Alu 1 298 -14 554 233 15 53 chr6 40144496 40144629 -149134925 - FLAM_A SINE Alu -5 128 1 5272 72 33 53 chr6 40144661 40145624 -149133930 + SVA Other Other 25 866 -592 2119 99 34 0 chr6 40146193 40146487 -149133067 - AluSx SINE Alu -8 304 1 427 298 51 6 chr6 40147438 40147596 -149131958 - MIR3 SINE MIR -29 179 15 181 283 123 28 chr6 40147849 40147955 -149131599 + L3 LINE CR1 1353 1468 -109 220 289 39 70 chr6 40148664 40148761 -149130793 + L2 LINE L2 3189 3283 -30 1903 160 0 3 chr6 40148761 40149073 -149130481 + AluSx SINE Alu 1 311 -1 220 289 39 70 chr6 40149073 40149103 -149130451 + L2 LINE L2 3283 3312 -1 2172 131 45 70 chr6 40149165 40149608 -149129946 + MSTB1 LTR MaLR 1 432 0 1976 128 0 17 chr6 40149636 40149932 -149129622 + AluSg SINE Alu 1 291 -19 387 0 0 0 chr6 40149934 40149977 -149129577 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 291 55 9 chr6 40150205 40150315 -149129239 - MIR SINE MIR -56 206 92 2274 95 0 0 chr6 40150331 40150635 -149128919 - AluSx SINE Alu -8 304 1 183 100 0 0 chr6 40150709 40150739 -149128815 + (TCC)n Simple_repeat Simple_repeat 2 31 0 283 200 0 29 chr6 40151726 40151796 -149127758 + MIR SINE MIR 189 256 -6 252 245 223 0 chr6 40152059 40152153 -149127401 - L2 LINE L2 0 3313 3199 423 38 0 0 chr6 40152155 40152208 -149127346 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr6 40152243 40152264 -149127290 + (TA)n Simple_repeat Simple_repeat 2 22 0 2220 92 3 10 chr6 40153533 40153871 -149125683 - AluSp SINE Alu 0 313 1 834 164 8 0 chr6 40153871 40154005 -149125549 - AluJo SINE Alu -177 135 1 1024 228 40 83 chr6 40154047 40154369 -149125185 - L1MC5 LINE L1 -436 7525 7191 2126 81 3 11 chr6 40154369 40154681 -149124873 - AluSc SINE Alu 0 310 1 1024 228 40 83 chr6 40154681 40154851 -149124703 - L1MC5 LINE L1 -770 7191 7015 2292 74 0 20 chr6 40154851 40155148 -149124406 - AluSc SINE Alu -18 291 1 1024 228 40 83 chr6 40155148 40155163 -149124391 - L1MC5 LINE L1 -946 7015 7001 548 140 50 10 chr6 40155163 40155263 -149124291 - U6 snRNA snRNA -3 104 1 1024 228 40 83 chr6 40155263 40155329 -149124225 - L1MC5 LINE L1 -960 7001 6973 2182 75 0 0 chr6 40155334 40155653 -149123901 - AluY SINE Alu 0 319 1 260 370 0 43 chr6 40155793 40155875 -149123679 + L2 LINE L2 3102 3177 -95 2082 118 16 3 chr6 40155875 40156180 -149123374 - AluSx SINE Alu -3 309 1 260 370 0 43 chr6 40156180 40156235 -149123319 + L2 LINE L2 3177 3233 -39 189 365 130 0 chr6 40159194 40159309 -149120245 - L2 LINE L2 -4 3268 3139 1785 45 0 45 chr6 40163066 40163308 -149116246 - AluY SINE Alu -80 231 1 589 39 90 0 chr6 40163308 40163386 -149116168 - MER30 DNA MER1_type -145 85 1 723 316 38 45 chr6 40163405 40163823 -149115731 - L1MC/D LINE L1 -2139 5669 5255 265 257 29 0 chr6 40164077 40164147 -149115407 - L2 LINE L2 0 3313 3242 2171 88 0 10 chr6 40164200 40164522 -149115032 - AluY SINE Alu 0 311 1 2068 119 16 0 chr6 40164524 40164827 -149114727 - AluSg SINE Alu -2 308 1 2244 82 0 25 chr6 40164893 40165210 -149114344 - AluY SINE Alu -2 309 1 827 113 17 0 chr6 40165237 40165352 -149114202 - FLAM_C SINE Alu -26 117 1 2035 121 7 7 chr6 40165386 40165684 -149113870 - AluSx SINE Alu -14 298 1 1351 188 57 25 chr6 40165794 40166102 -149113452 - AluJo SINE Alu 0 302 2 2113 128 3 0 chr6 40166351 40166656 -149112898 - AluSx SINE Alu 0 312 7 2065 142 3 0 chr6 40166757 40167068 -149112486 - AluSx SINE Alu 0 312 1 980 83 0 8 chr6 40167070 40167203 -149112351 - AluSq/x SINE Alu -181 132 1 2164 108 0 3 chr6 40169086 40169383 -149110171 + AluSg SINE Alu 1 296 -14 634 222 0 0 chr6 40169389 40169506 -149110048 - FLAM_C SINE Alu -25 118 2 1937 142 0 16 chr6 40169516 40169825 -149109729 - AluSx SINE Alu -8 304 1 438 252 87 8 chr6 40171674 40171801 -149107753 + MER91A DNA MER1_type 47 183 -13 665 37 0 0 chr6 40174142 40174223 -149105331 + HY3 scRNA scRNA 1 81 -20 1831 141 16 10 chr6 40174241 40174546 -149105008 + AluJb SINE Alu 1 307 -5 356 314 43 5 chr6 40177266 40177451 -149102103 - L2 LINE L2 -411 2903 2712 207 182 212 0 chr6 40177866 40177932 -149101622 - MIR SINE MIR -99 109 30 554 171 205 0 chr6 40178091 40178208 -149101346 - FLAM_C SINE Alu -1 142 2 2337 93 3 0 chr6 40178865 40179177 -149100377 - AluSq SINE Alu 0 313 1 2048 111 0 0 chr6 40179180 40179480 -149100074 - AluSx SINE Alu 0 305 6 2367 76 3 13 chr6 40180151 40180494 -149099060 + AluSp SINE Alu 1 340 0 1776 138 0 35 chr6 40180602 40180914 -149098640 + AluJb SINE Alu 3 303 -9 2595 39 3 0 chr6 40181030 40181340 -149098214 - AluY SINE Alu 0 311 1 307 290 0 30 chr6 40181458 40181558 -149097996 + MIR SINE MIR 51 147 -115 798 101 70 8 chr6 40181585 40181714 -149097840 - LTR7 LTR ERV1 -313 137 1 349 234 105 8 chr6 40181875 40181999 -149097555 - MIR SINE MIR -4 258 123 1818 128 30 37 chr6 40182009 40182307 -149097247 - AluJb SINE Alu 0 312 17 267 79 0 0 chr6 40182413 40182451 -149097103 + (CCCTG)n Simple_repeat Simple_repeat 1 38 0 1701 100 30 118 chr6 40182462 40182791 -149096763 - AluSq SINE Alu -13 300 1 1880 130 10 17 chr6 40184193 40184494 -149095060 - AluSq SINE Alu -14 299 1 789 167 24 0 chr6 40184596 40184722 -149094832 - FLAM_C SINE Alu -13 130 2 2115 113 0 28 chr6 40184881 40185200 -149094354 - AluSg SINE Alu 0 310 1 308 266 106 11 chr6 40185924 40186018 -149093536 + L1MC4 LINE L1 6599 6701 -1341 529 136 239 7 chr6 40186025 40186180 -149093374 - L1ME3 LINE L1 -2 6160 5970 1708 92 8 4 chr6 40187583 40187821 -149091733 - AluSq SINE Alu 0 313 75 1664 154 32 4 chr6 40188210 40188489 -149091065 + AluJo SINE Alu 7 293 -19 212 283 0 0 chr6 40189347 40189400 -149090154 + G-rich Low_complexity Low_complexity 1 53 0 1058 83 89 0 chr6 40189866 40190023 -149089531 - AluJb SINE Alu -6 306 136 2373 75 0 0 chr6 40190811 40191116 -149088438 - AluSg SINE Alu -5 305 1 692 113 0 0 chr6 40191690 40191787 -149087767 - AluJb SINE Alu -5 307 211 274 157 78 0 chr6 40191787 40191838 -149087716 - L1MB5 LINE L1 -78 6096 6042 2112 110 7 3 chr6 40191848 40192148 -149087406 - AluSq SINE Alu -12 301 1 2005 94 3 49 chr6 40192155 40192463 -149087091 - AluSx SINE Alu -18 294 1 1936 131 24 0 chr6 40193066 40193364 -149086190 - AluSx SINE Alu -7 305 1 1883 66 8 4 chr6 40197146 40197389 -149082165 - AluSg SINE Alu -13 297 54 781 62 0 0 chr6 40197389 40197486 -149082068 - AluSg SINE Alu -212 98 2 1447 124 5 0 chr6 40197489 40197706 -149081848 - AluSg/x SINE Alu -9 301 84 201 74 0 0 chr6 40197907 40197934 -149081620 + (A)n Simple_repeat Simple_repeat 1 27 0 2062 80 3 53 chr6 40198467 40198769 -149080785 + AluSp SINE Alu 7 293 -20 2325 97 3 0 chr6 40199099 40199410 -149080144 - AluSx SINE Alu 0 312 1 2184 114 3 0 chr6 40199791 40200098 -149079456 + AluSx SINE Alu 1 308 -4 1664 154 32 4 chr6 40200407 40200686 -149078868 + AluJo SINE Alu 7 293 -19 1067 82 89 0 chr6 40202061 40202219 -149077335 - AluJb SINE Alu -5 307 136 2373 75 0 0 chr6 40203006 40203311 -149076243 - AluSg SINE Alu -5 305 1 692 113 0 0 chr6 40203885 40203982 -149075572 - AluJb SINE Alu -5 307 211 274 157 78 0 chr6 40203982 40204033 -149075521 - L1MB5 LINE L1 -78 6096 6042 2097 113 7 3 chr6 40204043 40204343 -149075211 - AluSq SINE Alu -12 301 1 2005 94 3 49 chr6 40204350 40204658 -149074896 - AluSx SINE Alu -18 294 1 1936 131 24 0 chr6 40205261 40205559 -149073995 - AluSx SINE Alu -7 305 1 1341 72 6 0 chr6 40209149 40209329 -149070225 - AluY SINE Alu 0 311 131 1535 65 0 56 chr6 40209329 40209560 -149069994 - AluY SINE Alu -93 218 1 1781 173 90 27 chr6 40209973 40210079 -149069475 + L1MB2 LINE L1 5660 5758 -413 1991 129 0 13 chr6 40210079 40210381 -149069173 + AluSx SINE Alu 1 298 -14 1781 173 90 27 chr6 40210381 40210564 -149068990 + L1MB2 LINE L1 5758 5928 -243 1489 191 10 13 chr6 40210564 40210867 -149068687 + AluJb SINE Alu 1 302 -10 1781 173 90 27 chr6 40210867 40211056 -149068498 + L1MB2 LINE L1 5928 6169 -2 1549 167 7 20 chr6 40211065 40211214 -149068340 + AluJo SINE Alu 1 146 -166 1980 76 52 31 chr6 40211214 40211504 -149068050 + AluSx SINE Alu 1 296 -16 1549 167 7 20 chr6 40211504 40211654 -149067900 + AluJo SINE Alu 146 296 -16 387 0 0 0 chr6 40214091 40214134 -149065420 + (TG)n Simple_repeat Simple_repeat 2 44 0 2257 63 0 7 chr6 40214134 40214420 -149065134 - AluY SINE Alu -27 284 1 2228 102 10 0 chr6 40214669 40214974 -149064580 - AluSq SINE Alu -5 308 1 277 138 0 0 chr6 40215063 40215115 -149064439 + Alu SINE Alu 2 37 -271 2142 99 0 0 chr6 40215222 40215506 -149064048 + AluSc SINE Alu 1 284 -25 781 177 48 7 chr6 40215821 40215968 -149063586 - FRAM SINE Alu -4 172 20 1634 125 156 0 chr6 40215975 40216231 -149063323 - AluSq SINE Alu -7 296 1 2088 113 3 0 chr6 40216232 40216534 -149063020 - AluSx SINE Alu -9 303 1 29 0 0 0 chr6 40216572 40216601 -149062953 + AT_rich Low_complexity Low_complexity 1 29 0 889 197 0 0 chr6 40217884 40218036 -149061518 + FRAM SINE Alu 4 155 -11 2134 102 7 0 chr6 40218174 40218467 -149061087 + AluSg SINE Alu 1 295 -15 1675 167 31 14 chr6 40218477 40218764 -149060790 + AluJb SINE Alu 1 292 -20 2437 80 0 0 chr6 40218771 40219082 -149060472 + AluY SINE Alu 1 311 0 818 75 0 0 chr6 40219094 40219201 -149060353 + AluSc SINE Alu 1 107 -202 350 298 118 6 chr6 40219278 40219439 -149060115 - MIR SINE MIR -30 232 54 2069 130 0 0 chr6 40219450 40219751 -149059803 - AluSg1 SINE Alu -3 306 6 644 215 0 44 chr6 40219779 40219914 -149059640 - FLAM_C SINE Alu -13 130 2 2064 125 3 0 chr6 40219957 40220253 -149059301 + AluSx SINE Alu 1 297 -15 439 130 0 14 chr6 40220341 40220410 -149059144 - AluJo SINE Alu -19 293 226 1008 183 33 0 chr6 40220410 40220590 -149058964 - AluJo SINE Alu -126 186 1 2034 99 0 7 chr6 40220896 40221206 -149058348 - AluSg SINE Alu 0 308 1 1951 99 46 30 chr6 40221219 40221522 -149058032 - AluSc SINE Alu -1 308 1 2119 129 0 0 chr6 40221527 40221837 -149057717 - AluSg SINE Alu 0 310 1 802 145 0 16 chr6 40221847 40221971 -149057583 - AluJo SINE Alu -178 134 13 2094 125 0 3 chr6 40222020 40222324 -149057230 - AluSx SINE Alu -9 303 1 1078 163 16 0 chr6 40222642 40222826 -149056728 - AluSg/x SINE Alu -6 304 118 25 0 0 0 chr6 40222826 40222851 -149056703 + AT_rich Low_complexity Low_complexity 1 25 0 1409 126 5 14 chr6 40222851 40222930 -149056624 - AluSx SINE Alu -99 213 135 2393 70 3 0 chr6 40222930 40223231 -149056323 - AluY SINE Alu -9 302 1 1409 126 5 14 chr6 40223231 40223366 -149056188 - AluSx SINE Alu -177 135 1 2216 95 0 3 chr6 40223476 40223782 -149055772 - AluSg SINE Alu -5 305 1 628 209 26 0 chr6 40223810 40223925 -149055629 - FLAM_C SINE Alu -15 118 1 490 181 0 86 chr6 40224115 40224181 -149055373 + AluJo SINE Alu 77 130 -182 2272 79 0 0 chr6 40224181 40224471 -149055083 + AluY SINE Alu 1 290 -21 490 181 0 86 chr6 40224471 40224520 -149055034 + AluJo SINE Alu 130 182 -130 526 177 306 0 chr6 40224474 40224598 -149054956 + AluJo/FRAM SINE Alu 137 298 -4 2099 124 10 0 chr6 40224801 40225108 -149054446 + AluSx SINE Alu 1 310 -2 2073 91 37 7 chr6 40225465 40225763 -149053791 + AluSq SINE Alu 1 307 -6 184 147 0 29 chr6 40226905 40226939 -149052615 - MIR3 SINE MIR -31 177 145 1011 95 19 6 chr6 40226940 40227098 -149052456 - AluSg/x SINE Alu -19 293 134 2060 110 7 19 chr6 40227098 40227293 -149052261 - AluSx SINE Alu -7 305 114 1831 92 4 0 chr6 40227293 40227543 -149052011 - AluSg1 SINE Alu -43 266 16 2060 110 7 19 chr6 40227543 40227656 -149051898 - AluSx SINE Alu -198 114 1 183 211 26 0 chr6 40227660 40227698 -149051856 - MIR SINE MIR -61 147 109 26 30 0 0 chr6 40227987 40228020 -149051534 + GC_rich Low_complexity Low_complexity 1 33 0 339 308 62 41 chr6 40229115 40229310 -149050244 + MIR SINE MIR 54 252 -10 303 358 47 5 chr6 40229697 40229711 -149049843 + L2 LINE L2 3080 3092 -221 1911 109 59 30 chr6 40229711 40230014 -149049540 - AluSx SINE Alu 0 312 1 303 358 47 5 chr6 40230014 40230189 -149049365 + L2 LINE L2 3092 3277 -36 1974 52 0 12 chr6 40230311 40230560 -149048994 - AluY SINE Alu -12 299 54 221 0 0 33 chr6 40232454 40232484 -149047070 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 715 185 8 8 chr6 40232484 40232603 -149046951 - AluJb SINE Alu -188 124 3 1010 143 0 19 chr6 40232672 40232833 -149046721 - AluSg/x SINE Alu -21 289 132 602 310 2 112 chr6 40232886 40233203 -149046351 - L1MC4a LINE L1 -1761 6047 5783 2438 83 0 0 chr6 40233203 40233516 -149046038 - AluSq SINE Alu 0 313 1 602 310 2 112 chr6 40233516 40233608 -149045946 - L1MC4a LINE L1 -2025 5783 5683 1016 115 25 0 chr6 40233608 40233765 -149045789 - MER30 DNA MER1_type 0 230 70 1735 118 45 21 chr6 40233910 40234199 -149045355 + AluSp SINE Alu 1 296 -17 1985 79 48 7 chr6 40234199 40234490 -149045064 + AluY SINE Alu 1 303 -8 1891 109 11 4 chr6 40234491 40234765 -149044789 + AluSc SINE Alu 2 277 -32 1702 141 10 21 chr6 40234845 40235135 -149044419 + AluY SINE Alu 7 293 -18 1034 198 75 4 chr6 40235341 40235568 -149043986 + AluSx SINE Alu 53 295 -17 1848 109 0 66 chr6 40235622 40235925 -149043629 + AluSq SINE Alu 1 283 -30 1833 117 20 37 chr6 40236067 40236366 -149043188 - AluSc SINE Alu -15 294 1 1839 154 83 0 chr6 40236668 40236993 -149042561 + L1PA16 LINE L1 5804 6155 -11 1258 155 9 122 chr6 40236993 40237139 -149042415 + AluJb SINE Alu 1 89 -223 1972 100 7 47 chr6 40237139 40237440 -149042114 - AluSx SINE Alu -19 293 5 1258 155 9 122 chr6 40237440 40237629 -149041925 + AluJb SINE Alu 89 298 -14 1553 134 161 8 chr6 40237631 40237892 -149041662 + AluSx SINE Alu 2 302 0 1801 133 31 0 chr6 40237903 40238189 -149041365 + AluSg SINE Alu 1 295 -15 231 127 73 18 chr6 40238208 40238262 -149041292 + AluSq/x SINE Alu 56 112 -191 1287 142 93 19 chr6 40238262 40238573 -149040981 + MSTA LTR MaLR 1 364 -64 768 121 14 71 chr6 40239368 40239509 -149040045 + AluSq/x SINE Alu 2 134 -179 1170 201 148 11 chr6 40239637 40239900 -149039654 + AluJb SINE Alu 3 301 -1 1457 104 46 8 chr6 40239969 40240209 -149039345 + AluSc SINE Alu 56 304 -5 618 202 34 0 chr6 40240211 40240330 -149039224 + AluJo/FRAM SINE Alu 180 302 -10 2060 88 24 3 chr6 40240330 40240625 -149038929 + AluY SINE Alu 1 301 -10 23 0 0 0 chr6 40241597 40241620 -149037934 + GC_rich Low_complexity Low_complexity 1 23 0 499 214 4 61 chr6 40242025 40242254 -149037300 + SVA Other Other 574 789 -597 6738 60 5 43 chr6 40242271 40243263 -149036291 + SVA Other Other 433 1386 0 615 209 26 40 chr6 40243270 40243463 -149036091 - LTR24B LTR ERV1 -40 595 374 4450 125 51 32 chr6 40243464 40244663 -149034891 - pTR5 LTR ERV1 -171 2267 743 1682 106 144 35 chr6 40244664 40245005 -149034549 - LTR24B LTR ERV1 -195 381 4 1804 128 3 35 chr6 40245336 40245625 -149033929 - AluJb SINE Alu -15 297 18 206 32 32 0 chr6 40245704 40245735 -149033819 + (CAA)n Simple_repeat Simple_repeat 1 32 0 315 56 0 74 chr6 40245789 40245843 -149033711 - Alu SINE Alu -5 303 257 233 321 151 20 chr6 40252216 40252515 -149027039 - L2 LINE L2 -824 2490 2153 326 346 13 38 chr6 40252765 40252924 -149026630 + MER5A DNA MER1_type 35 189 0 1909 132 17 0 chr6 40253001 40253297 -149026257 + AluJb SINE Alu 1 301 -11 1235 206 0 114 chr6 40253434 40253784 -149025770 + AluSx SINE Alu 1 310 -2 2099 114 0 7 chr6 40254193 40254499 -149025055 - AluSc SINE Alu -5 304 1 881 95 16 0 chr6 40254502 40254628 -149024926 - AluSq/x SINE Alu -180 132 5 1749 155 4 0 chr6 40254638 40254915 -149024639 - AluJo SINE Alu -22 290 13 1405 181 51 14 chr6 40255128 40255420 -149024134 - AluJo SINE Alu -9 303 1 23 0 0 0 chr6 40255828 40255851 -149023703 + AT_rich Low_complexity Low_complexity 1 23 0 437 176 0 24 chr6 40255858 40255943 -149023611 + AluJb SINE Alu 198 280 -32 2099 108 3 3 chr6 40256138 40256433 -149023121 + AluSg SINE Alu 1 295 -15 300 267 137 7 chr6 40256445 40256591 -149022963 - L1MEd LINE L1 -5004 1115 951 937 126 0 15 chr6 40256604 40256739 -149022815 - FLAM_C SINE Alu 0 133 1 1950 145 0 3 chr6 40256900 40257196 -149022358 - AluSx SINE Alu -17 295 1 448 102 0 0 chr6 40257405 40257464 -149022090 - AluSq/x SINE Alu -193 120 62 1459 256 35 14 chr6 40257464 40257890 -149021664 - L2 LINE L2 -466 2848 2414 2500 46 10 0 chr6 40258142 40258448 -149021106 + AluY SINE Alu 1 309 -2 618 241 0 0 chr6 40258647 40258763 -149020791 + FLAM_A SINE Alu 1 116 -17 1552 170 17 17 chr6 40258766 40259054 -149020500 - AluJb SINE Alu -18 294 7 1439 181 13 43 chr6 40259083 40259227 -149020327 + AluJb SINE Alu 1 148 -164 2332 64 7 3 chr6 40259227 40259523 -149020031 + AluY SINE Alu 1 297 -14 2260 101 0 0 chr6 40259523 40259819 -149019735 + AluY SINE Alu 1 296 -15 1439 181 13 43 chr6 40259819 40259976 -149019578 + AluJb SINE Alu 146 294 -18 805 113 52 0 chr6 40259981 40260096 -149019458 + AluSq/x SINE Alu 1 121 -191 1063 123 13 0 chr6 40260228 40260382 -149019172 - AluSg/x SINE Alu -23 287 132 189 0 0 0 chr6 40260383 40260404 -149019150 + (TATG)n Simple_repeat Simple_repeat 2 22 0 2079 107 0 14 chr6 40260404 40260694 -149018860 - AluSq SINE Alu -27 286 1 272 85 0 0 chr6 40260799 40260846 -149018708 + Tigger7 DNA MER2_type 2321 2367 -120 1291 152 100 15 chr6 40260907 40261176 -149018378 + LTR23 LTR ERV1 1 292 -145 22 35 0 0 chr6 40261191 40261220 -149018334 + AT_rich Low_complexity Low_complexity 1 29 0 269 143 41 0 chr6 40261229 40261278 -149018276 - MER66A LTR ERV1 -144 334 284 792 185 15 0 chr6 40261339 40261469 -149018085 + FLAM_C SINE Alu 1 132 -1 629 145 35 35 chr6 40261476 40261621 -149017933 + LTR23 LTR ERV1 293 437 0 237 306 96 19 chr6 40261849 40262006 -149017548 + L2 LINE L2 3145 3313 0 1709 110 0 30 chr6 40263183 40263273 -149016281 + AluSx SINE Alu 48 139 -173 2089 105 10 10 chr6 40263273 40263578 -149015976 + AluSq SINE Alu 1 305 -8 1709 110 0 30 chr6 40263578 40263751 -149015803 + AluSx SINE Alu 139 303 -9 1516 160 70 72 chr6 40263751 40264104 -149015450 - L1MB3 LINE L1 -50 6133 5833 1385 171 49 31 chr6 40264104 40264390 -149015164 + AluJo SINE Alu 1 291 -21 1516 160 70 72 chr6 40264390 40264570 -149014984 - L1MB3 LINE L1 -350 5833 5654 2078 101 0 17 chr6 40265463 40265760 -149013794 - AluSx SINE Alu -20 292 1 885 261 77 34 chr6 40266083 40266475 -149013079 - L1MC5 LINE L1 -37 7924 7512 2226 81 7 10 chr6 40266475 40266772 -149012782 + AluSp SINE Alu 1 296 -17 885 261 77 34 chr6 40266772 40266796 -149012758 - L1MC5 LINE L1 -449 7512 7490 1446 125 13 9 chr6 40266815 40267059 -149012495 - AluSg/x SINE Alu 0 310 73 678 186 50 7 chr6 40267179 40267319 -149012235 - AluSq/x SINE Alu -165 147 2 1949 118 31 0 chr6 40267355 40267643 -149011911 + AluSq SINE Alu 3 299 -14 476 229 115 19 chr6 40267644 40267801 -149011753 - L1MC5 LINE L1 -478 7483 7312 245 286 27 54 chr6 40267804 40267951 -149011603 - L1MD3 LINE L1 -437 7558 7416 269 280 93 47 chr6 40267988 40268138 -149011416 - L1ME3A LINE L1 -220 5950 5794 444 161 0 0 chr6 40268334 40268415 -149011139 + GA-rich Low_complexity Low_complexity 2 82 0 377 331 70 0 chr6 40270336 40270478 -149009076 - L2 LINE L2 -3 3269 3118 247 286 18 45 chr6 40270543 40270655 -149008899 - MIR SINE MIR -144 118 10 187 333 35 11 chr6 40270652 40270739 -149008815 - L2 LINE L2 -163 3109 3021 * 681 254 90 90 chr6 40271483 40271797 -149007757 - L1MC5 LINE L1 -915 7046 6730 1886 79 0 0 chr6 40271797 40272038 -149007516 - AluSg SINE Alu -14 296 56 681 254 90 90 chr6 40272038 40272157 -149007397 - L1MC5 LINE L1 -1230 6731 6613 1002 191 12 0 chr6 40272159 40272327 -149007227 - FAM SINE Alu -5 170 1 2295 60 10 3 chr6 40272405 40272703 -149006851 - AluY SINE Alu -11 300 1 537 221 0 18 chr6 40272704 40272817 -149006737 - MIR SINE MIR -111 151 41 869 208 33 6 chr6 40273654 40273837 -149005717 + MER53 DNA DNA 1 188 -1 359 315 204 0 chr6 40274131 40274293 -149005261 + MER91A DNA MER1_type 2 196 0 257 220 0 17 chr6 40275435 40275494 -149004060 + C-rich Low_complexity Low_complexity 4 61 0 450 228 77 15 chr6 40275494 40275640 -149003914 + MIR SINE MIR 10 164 -61 2407 86 0 3 chr6 40275763 40276077 -149003477 - AluSq SINE Alu 0 313 1 698 249 35 0 chr6 40277330 40277499 -149002055 - MER5A DNA MER1_type 0 189 15 1952 120 10 3 chr6 40278304 40278595 -149000959 + AluSq SINE Alu 4 296 -17 277 284 128 27 chr6 40280994 40281142 -148998412 + L1ME3A LINE L1 5976 6138 -32 1285 159 45 0 chr6 40281212 40281432 -148998122 - AluJo SINE Alu -82 230 1 1245 120 0 5 chr6 40281457 40281641 -148997913 + AluSg/x SINE Alu 127 309 -1 353 308 24 76 chr6 40282264 40282514 -148997040 + MIR SINE MIR 2 238 -24 332 256 150 44 chr6 40282456 40282636 -148996918 - MIR SINE MIR 0 262 64 * 397 263 132 0 chr6 40283459 40283573 -148995981 - MIR3 SINE MIR -37 171 43 193 186 267 12 chr6 40283618 40283704 -148995850 - L2 LINE L2 -24 3289 3182 1957 69 9 129 chr6 40283773 40284106 -148995448 - AluSg SINE Alu -7 293 1 253 319 21 0 chr6 40284125 40284219 -148995335 + L1ME4a LINE L1 5955 6050 -71 353 246 26 26 chr6 40284253 40284367 -148995187 - FLAM_C SINE Alu -4 129 16 186 167 0 0 chr6 40284726 40284762 -148994792 + GA-rich Low_complexity Low_complexity 2 37 0 292 231 214 34 chr6 40285551 40285668 -148993886 + MIR3 SINE MIR 55 192 -16 1650 183 0 31 chr6 40285770 40286087 -148993467 + AluJb SINE Alu 5 311 -1 242 327 18 36 chr6 40286462 40286572 -148992982 - MIR SINE MIR -25 237 130 354 315 99 56 chr6 40286715 40287024 -148992530 - L1MB8 LINE L1 -245 5933 5639 2262 100 0 3 chr6 40287024 40287334 -148992220 - AluSc SINE Alu 0 309 1 354 315 99 56 chr6 40287334 40287617 -148991937 - L1MB8 LINE L1 -539 5639 5311 460 310 0 0 chr6 40287618 40287731 -148991823 - MIR SINE MIR -136 126 14 355 336 0 31 chr6 40291161 40291289 -148988265 + MER91B DNA MER1_type 12 135 -55 319 318 11 0 chr6 40291289 40291377 -148988177 + MER91B DNA MER1_type 100 188 -2 192 346 0 30 chr6 40292325 40292426 -148987128 - MER5B DNA MER1_type -80 98 1 242 326 54 8 chr6 40293940 40294069 -148985485 + L2 LINE L2 2120 2254 -1060 224 337 102 0 chr6 40295568 40295666 -148983888 + MIR3 SINE MIR 95 202 -6 1963 130 0 48 chr6 40295796 40295943 -148983611 + AluSx SINE Alu 1 127 -185 2409 41 10 0 chr6 40295943 40296235 -148983319 + AluY SINE Alu 1 295 -16 1963 130 0 48 chr6 40296235 40296402 -148983152 + AluSx SINE Alu 127 300 -12 1772 160 0 35 chr6 40296420 40296732 -148982822 + AluJb SINE Alu 9 309 -3 404 316 0 0 chr6 40297451 40297603 -148981951 + (CAGAGA)n Simple_repeat Simple_repeat 5 156 0 197 307 104 25 chr6 40298911 40299074 -148980480 - L2 LINE L2 -1017 2297 2122 282 261 141 60 chr6 40302433 40302617 -148976937 + MIR3 SINE MIR 1 199 -9 2136 117 3 0 chr6 40307659 40307958 -148971596 + AluSx SINE Alu 5 304 -8 844 221 39 54 chr6 40309454 40309754 -148969800 + L2 LINE L2 2784 3074 -239 514 123 37 0 chr6 40309773 40309854 -148969700 + AluJb SINE Alu 28 111 -201 832 146 70 6 chr6 40309913 40310084 -148969470 + MLT1C LTR MaLR 1 182 -285 712 94 0 0 chr6 40310120 40310216 -148969338 + AluSp/q SINE Alu 206 301 -12 2342 76 3 0 chr6 40310220 40310521 -148969033 + AluSg SINE Alu 1 302 -8 1757 147 10 19 chr6 40310528 40310835 -148968719 + AluSx SINE Alu 1 304 -8 197 229 0 37 chr6 40310886 40310944 -148968610 - MIR SINE MIR -137 71 19 22 0 0 0 chr6 40312505 40312527 -148967027 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 40312580 40312607 -148966947 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 40312918 40312940 -148966614 + GC_rich Low_complexity Low_complexity 1 22 0 2251 88 0 0 chr6 40313898 40314195 -148965359 + AluSx SINE Alu 5 301 -11 293 198 38 2 chr6 40314518 40314578 -148964976 + MER57A LTR ERV1 295 348 -55 213 167 24 0 chr6 40314624 40314666 -148964888 + MIR SINE MIR 92 134 -128 30 0 0 0 chr6 40314841 40314871 -148964683 + AT_rich Low_complexity Low_complexity 1 30 0 2134 111 0 0 chr6 40314871 40315160 -148964394 - AluSq SINE Alu -24 289 1 1733 161 3 17 chr6 40315699 40315997 -148963557 + AluJo SINE Alu 1 294 -18 864 143 0 8 chr6 40316032 40316165 -148963389 + FLAM_C SINE Alu 1 132 -1 191 305 211 0 chr6 40316256 40316351 -148963203 + MIR3 SINE MIR 89 203 -5 2164 119 0 10 chr6 40317402 40317712 -148961842 + AluSq SINE Alu 1 307 -6 1306 177 73 7 chr6 40317865 40318153 -148961401 + AluJb SINE Alu 1 307 -5 376 175 0 0 chr6 40318159 40318222 -148961332 - AluJb SINE Alu -35 267 205 1525 164 3 42 chr6 40318227 40318389 -148961165 - AluJb SINE Alu -13 299 153 2324 86 7 3 chr6 40318389 40318693 -148960861 - AluSq SINE Alu -8 305 1 1525 164 3 42 chr6 40318693 40318841 -148960713 - AluJb SINE Alu -159 153 1 2084 133 46 20 chr6 40318841 40318917 -148960637 + Tigger1 DNA MER2_type 2014 2087 -331 2166 114 3 3 chr6 40318917 40319225 -148960329 + AluSx SINE Alu 1 308 -4 2084 133 46 20 chr6 40319225 40319539 -148960015 + Tigger1 DNA MER2_type 2087 2414 -4 473 195 123 0 chr6 40319604 40319840 -148959714 - L1ME3A LINE L1 -214 5956 5594 1690 150 36 0 chr6 40319846 40320126 -148959428 - AluJb SINE Alu -10 302 13 799 132 0 59 chr6 40320151 40320287 -148959267 - FLAM_C SINE Alu -1 132 5 1506 148 7 24 chr6 40320293 40320420 -148959134 - L1M3 LINE L1 -573 5607 5479 2351 85 0 0 chr6 40320420 40320726 -148958828 - AluSg SINE Alu -4 306 1 1506 148 7 24 chr6 40320726 40320888 -148958666 - L1M3 LINE L1 -701 5479 5323 229 130 65 0 chr6 40320888 40320934 -148958620 - AluJb SINE Alu -8 293 245 1027 140 34 17 chr6 40321102 40321280 -148958274 - AluJb SINE Alu -45 267 87 787 211 110 25 chr6 40321280 40321434 -148958120 + Charlie2 DNA MER1_type 2475 2615 -247 2300 103 0 0 chr6 40321434 40321746 -148957808 + AluSx SINE Alu 1 312 0 2046 105 0 3 chr6 40321753 40322074 -148957480 + AluSx SINE Alu 1 320 0 787 211 110 25 chr6 40322074 40322266 -148957288 + Charlie2 DNA MER1_type 2620 2860 -2 326 112 24 208 chr6 40322318 40322365 -148957189 - MER5A DNA MER1_type -84 105 51 2249 93 36 0 chr6 40322365 40322666 -148956888 - AluSx SINE Alu 0 312 1 841 103 15 37 chr6 40322672 40322808 -148956746 - FLAM_C SINE Alu 0 133 1 326 112 24 208 chr6 40322808 40322878 -148956676 - MER5A DNA MER1_type -143 46 4 326 278 11 0 chr6 40322887 40322977 -148956577 - L1ME LINE L1 -523 5647 5557 216 277 117 52 chr6 40323025 40323256 -148956298 + L2 LINE L2 1917 2162 -1152 2256 107 3 3 chr6 40323294 40323604 -148955950 + AluSx SINE Alu 1 310 -2 904 155 0 0 chr6 40323650 40323792 -148955762 + FLAM_C SINE Alu 1 142 -1 302 201 0 174 chr6 40323793 40323851 -148955703 + MLT2C1 LTR ERVL 17 83 -314 614 231 15 15 chr6 40323851 40323981 -148955573 - FLAM_A SINE Alu -3 130 1 302 201 0 174 chr6 40323981 40324032 -148955522 + MLT2C1 LTR ERVL 83 96 -301 1967 133 0 32 chr6 40324032 40324348 -148955206 + AluSq SINE Alu 1 306 -7 302 201 0 174 chr6 40324348 40324386 -148955168 + MLT2C1 LTR ERVL 96 139 -258 2058 107 24 0 chr6 40324386 40324676 -148954878 - AluSg SINE Alu -13 297 1 1578 114 83 19 chr6 40324677 40324941 -148954613 - AluSc SINE Alu -20 289 9 878 236 78 14 chr6 40325154 40325414 -148954140 + MLT1C LTR MaLR 187 589 -4 189 107 0 0 chr6 40326251 40326279 -148953275 + (ATG)n Simple_repeat Simple_repeat 3 30 0 240 314 141 0 chr6 40326290 40326411 -148953143 - MIR SINE MIR -4 258 121 38 0 0 20 chr6 40326466 40326497 -148953057 + AT_rich Low_complexity Low_complexity 1 32 -16 1904 130 3 23 chr6 40326497 40326798 -148952756 + AluSx SINE Alu 1 295 -17 38 0 0 20 chr6 40326798 40326815 -148952739 + AT_rich Low_complexity Low_complexity 32 48 0 627 231 8 8 chr6 40326825 40326942 -148952612 + FRAM SINE Alu 1 117 -59 195 42 0 0 chr6 40327045 40327069 -148952485 + (A)n Simple_repeat Simple_repeat 1 24 0 1865 129 0 46 chr6 40327478 40327624 -148951930 + AluSx SINE Alu 1 127 -185 2228 82 24 0 chr6 40327624 40327918 -148951636 + AluSp SINE Alu 1 301 -12 1865 129 0 46 chr6 40327918 40328073 -148951481 + AluSx SINE Alu 127 288 -24 447 92 0 0 chr6 40328073 40328138 -148951416 + (TA)n Simple_repeat Simple_repeat 2 66 0 345 346 132 0 chr6 40328141 40328346 -148951208 - MIR SINE MIR -11 251 20 1870 112 3 25 chr6 40328541 40328826 -148950728 - AluSx SINE Alu -4 308 30 2080 125 0 3 chr6 40328982 40329293 -148950261 + AluSg SINE Alu 1 310 0 1847 107 56 0 chr6 40330030 40330332 -148949222 + AluSx SINE Alu 1 317 0 246 293 83 22 chr6 40330390 40330540 -148949014 - MIR SINE MIR -79 183 24 1970 123 7 0 chr6 40330742 40331061 -148948493 - AluSq SINE Alu 0 321 1 27 49 0 0 chr6 40331109 40331150 -148948404 + AT_rich Low_complexity Low_complexity 1 41 0 693 286 42 16 chr6 40332355 40332633 -148946921 + L1ME LINE L1 5411 5701 -465 5630 78 32 15 chr6 40332635 40333479 -148946075 + SVA Other Other 9 866 -520 282 49 0 0 chr6 40333582 40333623 -148945931 + AluSp/q SINE Alu 256 296 -7 2035 82 44 0 chr6 40333657 40333965 -148945589 - AluSx SINE Alu 0 321 2 2223 104 3 0 chr6 40333966 40334265 -148945289 - AluSg SINE Alu -6 304 5 539 302 88 0 chr6 40334265 40334470 -148945084 - MIR SINE MIR -37 225 3 248 246 87 0 chr6 40335102 40335171 -148944383 - MER116 DNA Mariner 0 80 6 730 158 0 0 chr6 40336962 40337076 -148942478 + AluSg/x SINE Alu 187 300 -9 2250 87 7 3 chr6 40337076 40337374 -148942180 + AluSq SINE Alu 1 299 -14 1261 201 121 35 chr6 40337458 40337862 -148941692 + MLT1J LTR MaLR 1 439 -72 740 257 93 51 chr6 40337952 40338114 -148941440 + MLT1I LTR MaLR 108 285 -124 2288 91 0 0 chr6 40338114 40338412 -148941142 + AluSx SINE Alu 1 298 -14 740 257 93 51 chr6 40338412 40338486 -148941068 + MLT1I LTR MaLR 285 354 -55 956 233 12 33 chr6 40338666 40338911 -148940643 - MLT1H LTR MaLR -296 253 14 464 301 174 17 chr6 40339220 40339456 -148940098 + MLT1J LTR MaLR 239 511 0 2372 63 0 3 chr6 40339607 40339910 -148939644 + AluY SINE Alu 1 302 -9 2373 63 3 22 chr6 40339918 40340234 -148939320 + AluY SINE Alu 1 310 -1 2196 111 0 13 chr6 40340831 40341147 -148938407 - AluSx SINE Alu 0 312 1 1194 231 165 18 chr6 40341498 40341897 -148937657 + LTR16C LTR ERVL 19 476 -15 1057 237 4 4 chr6 40341923 40342151 -148937403 - MIR SINE MIR -33 229 2 304 295 83 68 chr6 40343783 40344180 -148935374 + L1MC4a LINE L1 5665 6067 -1741 2058 99 0 40 chr6 40344262 40344565 -148934989 + AluSx SINE Alu 1 291 -21 2161 87 10 0 chr6 40344570 40344859 -148934695 + AluSg SINE Alu 1 292 -18 292 356 10 0 chr6 40344946 40345050 -148934504 + MIR SINE MIR 49 153 -109 936 161 0 13 chr6 40345052 40345207 -148934347 + FRAM SINE Alu 5 157 -19 1790 173 0 0 chr6 40345209 40345529 -148934025 + AluJo SINE Alu 1 320 0 195 241 107 18 chr6 40345620 40345732 -148933822 - L2 LINE L2 -257 3056 2935 443 185 0 0 chr6 40347277 40347358 -148932196 + MIR SINE MIR 113 193 -69 264 244 126 50 chr6 40347586 40347705 -148931849 - L2 LINE L2 0 3313 3186 2468 41 0 0 chr6 40347746 40348040 -148931514 - AluY SINE Alu -17 294 1 320 293 35 17 chr6 40348269 40348385 -148931169 - MER91A DNA MER1_type -15 181 64 300 270 111 0 chr6 40348653 40348779 -148930775 - MIR3 SINE MIR -62 146 7 1410 169 7 75 chr6 40348910 40349250 -148930304 - AluJo SINE Alu 0 328 9 554 252 7 14 chr6 40349253 40349396 -148930158 + MIR SINE MIR 121 262 0 2156 87 21 0 chr6 40349638 40349926 -148929628 + AluSx SINE Alu 4 297 -15 197 171 0 0 chr6 40349935 40349970 -148929584 - L2 LINE L2 -17 3255 3221 1562 188 34 7 chr6 40349999 40350297 -148929257 - AluJb SINE Alu 0 312 7 1776 125 7 56 chr6 40350358 40350662 -148928892 + AluSg SINE Alu 1 289 -21 853 251 40 52 chr6 40350709 40350842 -148928712 - L1MC5 LINE L1 -30 7931 7798 2232 95 0 3 chr6 40350842 40351137 -148928417 - AluSq SINE Alu -16 297 4 853 251 40 52 chr6 40351137 40351330 -148928224 - L1MC5 LINE L1 -163 7798 7609 401 219 219 0 chr6 40352508 40352613 -148926941 + MER45A DNA AcHobo 47 174 -4 2194 83 10 13 chr6 40353376 40353688 -148925866 + AluSx SINE Alu 1 311 -1 340 298 139 29 chr6 40353769 40353967 -148925587 - MIR SINE MIR -34 228 15 2194 73 27 3 chr6 40354227 40354528 -148925026 + AluSx SINE Alu 1 308 -4 209 276 0 26 chr6 40355236 40355312 -148924242 + CT-rich Low_complexity Low_complexity 2 75 0 702 263 13 36 chr6 40355941 40356165 -148923389 - L2 LINE L2 -3 3310 3092 620 279 76 0 chr6 40356772 40356944 -148922610 - MER91A DNA MER1_type 0 196 12 1768 160 3 22 chr6 40358707 40359019 -148920535 - AluJb SINE Alu -6 306 1 2271 90 0 13 chr6 40359108 40359419 -148920135 - AluSx SINE Alu 0 312 6 1348 130 0 5 chr6 40359551 40359766 -148919788 - AluSq SINE Alu -99 214 1 34 24 0 0 chr6 40359770 40359811 -148919743 + AT_rich Low_complexity Low_complexity 1 41 0 1984 135 0 3 chr6 40359821 40360117 -148919437 + AluSx SINE Alu 1 295 -17 1878 149 7 0 chr6 40360170 40360466 -148919088 + AluSx SINE Alu 1 298 -14 554 233 15 53 chr6 40360481 40360614 -148918940 - FLAM_A SINE Alu -5 128 1 5247 74 33 55 chr6 40360646 40361604 -148917950 + SVA Other Other 25 868 -636 23 0 0 0 chr6 40361974 40361997 -148917557 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 40362031 40362052 -148917502 + GC_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr6 40362091 40362132 -148917422 + (CCG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr6 40362139 40362170 -148917384 + GC_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 40364802 40364847 -148914707 + GC_rich Low_complexity Low_complexity 1 45 0 1661 111 49 62 chr6 40366568 40366694 -148912860 + AluSx SINE Alu 6 132 -180 2201 48 4 0 chr6 40366694 40366963 -148912591 + AluY SINE Alu 14 283 -28 2066 110 0 14 chr6 40366967 40367257 -148912297 + AluSq SINE Alu 1 286 -27 189 0 0 0 chr6 40367257 40367278 -148912276 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1661 111 49 62 chr6 40367278 40367433 -148912121 + AluSx SINE Alu 133 289 -23 805 113 52 0 chr6 40367566 40367681 -148911873 - AluSq/x SINE Alu -192 121 1 1524 192 14 7 chr6 40367686 40367843 -148911711 - AluJo SINE Alu -18 294 133 2260 101 0 0 chr6 40367843 40368139 -148911415 - AluY SINE Alu -15 296 1 1524 192 14 7 chr6 40368139 40368273 -148911281 - AluJo SINE Alu -179 133 1 1799 203 108 0 chr6 40368596 40369020 -148910534 - L1ME3 LINE L1 0 6162 5693 6952 56 6 35 chr6 40369020 40370005 -148909549 - SVA Other Other 0 1386 430 5483 62 24 1 chr6 40370033 40370779 -148908775 - SVA Other Other -572 814 52 1905 117 13 30 chr6 40370919 40371079 -148908475 - AluSx SINE Alu -18 294 140 2268 77 3 26 chr6 40371079 40371389 -148908165 - AluY SINE Alu -8 303 1 1905 117 13 30 chr6 40371389 40371527 -148908027 - AluSx SINE Alu -172 140 1 1968 135 20 0 chr6 40371531 40371828 -148907726 - AluSx SINE Alu -9 303 1 1347 167 59 42 chr6 40371890 40372177 -148907377 - AluJo SINE Alu -20 292 1 223 238 12 12 chr6 40372902 40372986 -148906568 + GA-rich Low_complexity Low_complexity 3 86 0 1328 144 28 12 chr6 40373147 40373397 -148906157 - L1PA16 LINE L1 -107 6059 5806 2225 105 3 0 chr6 40373494 40373800 -148905754 - AluSx SINE Alu -5 307 1 678 156 25 25 chr6 40373800 40373922 -148905632 - AluSg/x SINE Alu -7 302 181 500 351 51 16 chr6 40373941 40374108 -148905446 + LTR16C LTR ERVL 166 326 -165 2329 95 0 0 chr6 40374108 40374412 -148905142 - AluSx SINE Alu -8 304 1 500 351 51 16 chr6 40374412 40374557 -148904997 + LTR16C LTR ERVL 326 489 -2 1094 238 102 56 chr6 40374790 40375181 -148904373 + MLT1I LTR MaLR 1 409 0 184 308 241 8 chr6 40375493 40375626 -148903928 - L2 LINE L2 -572 2742 2579 219 36 0 0 chr6 40375750 40375778 -148903776 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2298 46 0 4 chr6 40375778 40376058 -148903496 - AluY SINE Alu -32 279 1 2405 74 0 0 chr6 40376081 40376378 -148903176 - AluSg SINE Alu -13 297 1 453 61 45 0 chr6 40376378 40376444 -148903110 - MLT2C2 LTR ERVL -201 263 195 4155 2 0 2 chr6 40376593 40377111 -148902443 + HERVKC4 LTR ERVK 4746 5262 0 4159 75 16 20 chr6 40377111 40377661 -148901893 + LTR14 LTR ERVK 1 548 0 201 39 0 0 chr6 40379641 40379667 -148899887 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 1601 113 105 0 chr6 40479909 40480147 -148799407 + AluSg SINE Alu 46 308 -2 2066 109 4 0 chr6 40480382 40480649 -148798905 + AluSx SINE Alu 1 268 -44 1739 181 31 52 chr6 40481245 40481434 -148798120 - L1MB7 LINE L1 -206 5978 5786 2159 96 0 7 chr6 40481434 40481706 -148797848 - AluSx SINE Alu -6 306 37 1739 181 31 52 chr6 40481706 40481835 -148797719 - L1MB7 LINE L1 -398 5786 5669 2583 83 0 0 chr6 40481835 40482148 -148797406 - AluSp SINE Alu 0 313 1 1739 181 31 52 chr6 40482148 40482248 -148797306 - L1MB7 LINE L1 -515 5669 5568 258 316 0 54 chr6 40482514 40482682 -148796872 + C-rich Low_complexity Low_complexity 4 162 0 204 178 0 44 chr6 40483499 40483544 -148796010 + (CCA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr6 40483663 40483685 -148795869 + GC_rich Low_complexity Low_complexity 1 22 0 1219 121 6 0 chr6 40483872 40484045 -148795509 - AluSq SINE Alu -138 175 2 1426 130 42 0 chr6 40484442 40484658 -148794896 - AluJo SINE Alu -1 311 87 2398 87 3 7 chr6 40484982 40485281 -148794273 - AluSq SINE Alu -15 298 1 1188 205 36 33 chr6 40485663 40485910 -148793644 - L1MDb LINE L1 -4987 1422 1172 2216 126 7 3 chr6 40485910 40486220 -148793334 - AluSq SINE Alu -2 311 1 1188 205 36 33 chr6 40486220 40486303 -148793251 - L1MDb LINE L1 -5237 1172 1091 1089 117 49 208 chr6 40486305 40486534 -148793020 - AluJb SINE Alu -3 309 140 270 0 0 0 chr6 40486534 40486564 -148792990 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1089 117 49 208 chr6 40486564 40486642 -148792912 - AluJb SINE Alu -172 140 51 2204 137 0 0 chr6 40486673 40486966 -148792588 - AluSx SINE Alu -17 295 3 2260 106 3 0 chr6 40486976 40487269 -148792285 - AluSx SINE Alu -6 306 13 2161 144 0 0 chr6 40489632 40489944 -148789610 + AluSx SINE Alu 1 312 0 283 273 39 0 chr6 40490056 40490133 -148789421 + L1MC4 LINE L1 7403 7482 -560 1130 61 0 0 chr6 40490134 40490266 -148789288 + AluSq/x SINE Alu 1 132 -180 2266 85 17 0 chr6 40490268 40490561 -148788993 + AluSx SINE Alu 1 298 -14 2200 94 7 0 chr6 40490563 40490839 -148788715 + AluSq SINE Alu 1 278 -35 180 0 0 0 chr6 40490843 40490863 -148788691 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 299 222 148 0 chr6 40490863 40490971 -148788583 + L1MC4 LINE L1 7615 7738 -304 1416 58 116 0 chr6 40491115 40491304 -148788250 - AluSq SINE Alu -102 211 1 1624 94 0 31 chr6 40491314 40491538 -148788016 - AluSg/x SINE Alu -4 308 92 1924 181 0 3 chr6 40495156 40495466 -148784088 - AluJo SINE Alu 0 312 4 2256 112 0 3 chr6 40496271 40496566 -148782988 - AluSg SINE Alu -16 294 1 300 297 0 0 chr6 40496738 40496812 -148782742 - L2 LINE L2 -12 3260 3187 2211 72 69 0 chr6 40496918 40497195 -148782359 + AluY SINE Alu 1 296 -15 23 33 0 0 chr6 40497409 40497439 -148782115 + GC_rich Low_complexity Low_complexity 1 30 0 220 311 49 25 chr6 40497601 40497723 -148781831 - L2 LINE L2 -114 3199 3075 1747 182 0 4 chr6 40497776 40498056 -148781498 - AluJb SINE Alu -33 279 1 930 308 27 7 chr6 40498059 40498549 -148781005 - L2 LINE L2 -238 3075 2572 327 321 0 0 chr6 40498549 40498658 -148780896 - L2 LINE L2 -1162 2152 2044 1840 178 27 0 chr6 40498661 40498954 -148780600 - AluJb SINE Alu -10 302 2 444 229 0 29 chr6 40498977 40499118 -148780436 - L1PB4 LINE L1 0 6166 6029 2281 97 0 10 chr6 40499119 40499419 -148780135 - AluSx SINE Alu -15 297 1 1725 174 66 3 chr6 40499419 40499706 -148779848 - AluSx SINE Alu -6 306 1 619 133 0 29 chr6 40499709 40499788 -148779766 - L1PA15 LINE L1 -259 5906 5829 2476 97 0 0 chr6 40499788 40500098 -148779456 - AluSq SINE Alu -3 310 1 619 133 0 29 chr6 40500098 40500123 -148779431 - L1PA15 LINE L1 -336 5829 5805 600 207 95 41 chr6 40500125 40500294 -148779260 - MER20 DNA MER1_type -41 178 1 418 154 0 13 chr6 40500326 40500404 -148779150 + MER20 DNA MER1_type 142 218 -1 809 243 55 113 chr6 40500427 40500578 -148778976 - PABL_B LTR ERV1 0 667 509 2508 87 0 0 chr6 40500578 40500878 -148778676 - AluSc SINE Alu -9 300 1 809 243 55 113 chr6 40500878 40501434 -148778120 - PABL_B LTR ERV1 -158 509 1 643 243 138 0 chr6 40501435 40501653 -148777901 - L2 LINE L2 -1375 1939 1692 26 30 0 0 chr6 40501659 40501692 -148777862 + AT_rich Low_complexity Low_complexity 1 33 0 2403 81 24 0 chr6 40501766 40502063 -148777491 + AluSx SINE Alu 5 308 -4 1372 269 259 12 chr6 40502205 40503035 -148776519 - L2 LINE L2 -1605 1709 675 1866 148 9 49 chr6 40503042 40503179 -148776375 + AluSx SINE Alu 1 142 -170 2288 109 10 3 chr6 40503179 40503490 -148776064 + AluSq SINE Alu 1 313 0 2316 80 0 35 chr6 40503492 40503803 -148775751 + AluY SINE Alu 1 300 -11 1866 148 9 49 chr6 40503803 40503987 -148775567 + AluSx SINE Alu 143 312 0 726 137 8 0 chr6 40503996 40504113 -148775441 + AluJb SINE Alu 190 307 -5 2224 117 10 0 chr6 40504113 40504422 -148775132 + AluSq SINE Alu 1 312 -1 2064 117 0 13 chr6 40504663 40504962 -148774592 - AluY SINE Alu -16 295 1 265 230 0 35 chr6 40504962 40505049 -148774505 - L1MDb LINE L1 -5235 1174 1091 1089 117 49 208 chr6 40505052 40505281 -148774273 - AluJb SINE Alu -3 309 140 270 0 0 0 chr6 40505281 40505311 -148774243 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1089 117 49 208 chr6 40505311 40505389 -148774165 - AluJb SINE Alu -172 140 51 2204 137 0 0 chr6 40505420 40505713 -148773841 - AluSx SINE Alu -17 295 3 198 0 0 0 chr6 40505723 40505745 -148773809 + (T)n Simple_repeat Simple_repeat 1 22 0 393 127 14 0 chr6 40505856 40505927 -148773627 - L1M4 LINE L1 -948 5198 5127 1180 162 5 72 chr6 40505934 40506156 -148773398 + AluJo SINE Alu 87 293 -19 582 200 6 53 chr6 40506161 40506331 -148773223 - L1M4 LINE L1 -1022 5124 4963 * 1995 199 5 12 chr6 40506329 40506760 -148772794 - L1M4 LINE L1 -3118 3028 2601 672 235 66 0 chr6 40506764 40506930 -148772624 + LTR16A LTR ERVL 86 262 -188 269 286 9 71 chr6 40507055 40507167 -148772387 - L2 LINE L2 -625 2689 2585 2582 85 0 0 chr6 40507235 40507540 -148772014 - AluSx SINE Alu -7 305 1 1991 139 11 0 chr6 40507540 40507820 -148771734 - AluSx SINE Alu -29 283 1 214 300 320 20 chr6 40507821 40508021 -148771533 + L2 LINE L2 3054 3313 0 2232 213 144 70 chr6 40508425 40508788 -148770766 - L2 LINE L2 -74 3239 2904 2215 98 27 0 chr6 40508788 40509085 -148770469 + AluY SINE Alu 5 309 -2 2232 213 144 70 chr6 40509085 40509374 -148770180 - L2 LINE L2 -409 2904 2638 2918 19 0 0 chr6 40509374 40509686 -148769868 - AluYb8 SINE Alu -6 312 1 2232 213 144 70 chr6 40509686 40510130 -148769424 - L2 LINE L2 -675 2638 2061 1885 158 3 3 chr6 40510203 40510500 -148769054 - AluJb SINE Alu -7 305 9 582 286 88 64 chr6 40511367 40511755 -148767799 + L1ME LINE L1 5311 5707 -414 2145 112 33 13 chr6 40511757 40512061 -148767493 + AluSx SINE Alu 3 312 0 905 204 0 17 chr6 40512101 40512277 -148767277 + FRAM SINE Alu 1 165 -11 2078 215 45 28 chr6 40512388 40512485 -148767069 + L1MC4 LINE L1 7457 7551 -491 2109 94 59 3 chr6 40512485 40512773 -148766781 + AluSq SINE Alu 1 304 -9 2078 215 45 28 chr6 40512773 40513251 -148766303 + L1MC4 LINE L1 7551 8042 0 288 0 0 0 chr6 40514386 40514418 -148765136 + (CTG)n Simple_repeat Simple_repeat 2 33 0 301 262 41 35 chr6 40515311 40515456 -148764098 + GA-rich Low_complexity Low_complexity 2 147 0 522 304 32 23 chr6 40516285 40516505 -148763049 + MIR SINE MIR 8 229 -33 361 235 51 10 chr6 40516575 40516673 -148762881 - MIR SINE MIR -69 139 38 264 202 228 35 chr6 40518881 40518995 -148760559 - MER91C DNA MER1_type -2 138 3 951 223 100 0 chr6 40519278 40519498 -148760056 - MIR SINE MIR -19 243 2 792 253 10 10 chr6 40520673 40520871 -148758683 - MIR SINE MIR -1 261 64 270 246 15 0 chr6 40521447 40521512 -148758042 - MER91B DNA MER1_type -113 77 12 194 324 160 71 chr6 40521618 40521872 -148757682 - L2 LINE L2 0 3272 2989 2124 139 0 16 chr6 40521872 40522008 -148757546 + AluSx SINE Alu 1 138 -174 2194 82 0 0 chr6 40522008 40522278 -148757276 + AluY SINE Alu 35 304 -7 2124 139 0 16 chr6 40522278 40522458 -148757096 + AluSx SINE Alu 138 312 0 194 324 160 71 chr6 40522458 40522484 -148757070 - L2 LINE L2 -283 2989 2967 225 209 0 0 chr6 40522485 40522528 -148757026 + GA-rich Low_complexity Low_complexity 2 44 0 270 326 39 23 chr6 40522528 40522657 -148756897 - L2 LINE L2 -263 3009 2879 308 248 47 81 chr6 40523339 40523365 -148756189 - L2 LINE L2 -2 3311 3286 2160 105 7 33 chr6 40523365 40523669 -148755885 + AluSx SINE Alu 1 296 -16 308 248 47 81 chr6 40523669 40523791 -148755763 - L2 LINE L2 -27 3286 3168 225 94 0 0 chr6 40523803 40523835 -148755719 + (TA)n Simple_repeat Simple_repeat 2 33 0 219 277 10 40 chr6 40524325 40524426 -148755128 + G-rich Low_complexity Low_complexity 2 99 0 * 243 235 20 0 chr6 40524376 40524427 -148755127 + GA-rich Low_complexity Low_complexity 3 54 0 937 196 108 10 chr6 40524710 40524904 -148754650 + AluJb SINE Alu 82 294 -18 2061 101 21 31 chr6 40526657 40526986 -148752568 - AluSx SINE Alu 0 326 1 2069 118 0 4 chr6 40527006 40527316 -148752238 - AluSg SINE Alu 0 309 1 567 340 80 21 chr6 40527640 40528221 -148751333 + L2 LINE L2 2468 3089 -183 203 268 99 0 chr6 40528221 40528292 -148751262 - MIR SINE MIR -171 91 14 2029 112 45 52 chr6 40528323 40528385 -148751169 - L1MA4 LINE L1 0 6300 6239 2135 130 10 3 chr6 40528385 40528692 -148750862 - AluSx SINE Alu -1 311 3 2029 112 45 52 chr6 40528692 40529030 -148750524 - L1MA4 LINE L1 -61 6239 5903 3433 148 47 22 chr6 40529116 40529536 -148750018 - L1MA4 LINE L1 -380 5920 5512 2070 159 0 3 chr6 40529536 40529844 -148749710 - AluSx SINE Alu -5 307 1 3433 148 47 22 chr6 40529844 40530270 -148749284 - L1MA4 LINE L1 -788 5512 5036 1855 109 91 7 chr6 40530270 40530546 -148749008 - AluSg SINE Alu -11 299 1 3433 148 47 22 chr6 40530546 40530631 -148748923 - L1MA4 LINE L1 -1264 5036 4955 1318 119 5 68 chr6 40530632 40530851 -148748703 - AluSg/x SINE Alu -9 301 97 203 387 95 15 chr6 40531133 40531407 -148748147 + L2 LINE L2 2973 3268 -4 184 336 92 30 chr6 40531611 40531873 -148747681 - L2 LINE L2 -349 2965 2688 390 242 124 54 chr6 40532147 40532445 -148747109 - L1ME4a LINE L1 -2 6119 5801 924 139 0 0 chr6 40532765 40532894 -148746660 + AluSg/x SINE Alu 137 265 -47 225 0 0 0 chr6 40532914 40532939 -148746615 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2331 94 0 16 chr6 40532939 40533246 -148746308 + AluSc SINE Alu 1 302 -7 1162 255 47 15 chr6 40533333 40533741 -148745813 + L1MDb LINE L1 754 1174 -5235 * 4297 26 37 0 chr6 40533737 40534245 -148745309 - L1PA4 LINE L1 -1130 5016 4490 7757 29 2 0 chr6 40534245 40535391 -148744163 + L1PA4 LINE L1 5007 6155 0 713 201 43 14 chr6 40535415 40535446 -148744108 + L1M4 LINE L1 956 985 -5397 420 161 46 11 chr6 40535446 40535533 -148744021 + L1PA5 LINE L1 6048 6137 -17 713 201 43 14 chr6 40535533 40535753 -148743801 + L1M4 LINE L1 985 1317 -5065 * 32666 108 20 62 chr6 40535752 40537462 -148742092 + L1PA6 LINE L1 3 1783 -4371 2464 75 0 0 chr6 40537462 40537756 -148741798 + AluY SINE Alu 5 298 -13 32666 108 20 62 chr6 40537756 40542483 -148737071 + L1PA6 LINE L1 1783 6153 -1 273 231 9 28 chr6 40542466 40542574 -148736980 + L1M4 LINE L1 1285 1390 -4992 * 1299 155 0 19 chr6 40542603 40542810 -148736744 - AluJb SINE Alu -28 284 82 974 249 86 9 chr6 40542820 40543145 -148736409 + L1M4 LINE L1 1408 1757 -4625 1332 260 71 0 chr6 40543159 40543593 -148735961 + L1M4 LINE L1 4518 4982 -1400 2342 190 0 14 chr6 40543605 40544020 -148735534 + L1PA12 LINE L1 7 415 -7166 236 376 0 0 chr6 40544349 40544466 -148735088 + C-rich Low_complexity Low_complexity 6 122 0 1704 215 111 29 chr6 40544645 40545328 -148734226 - L1MC5 LINE L1 -442 7519 6781 229 192 19 0 chr6 40545339 40545391 -148734163 - L1MC5 LINE L1 -1224 6737 6685 550 210 70 0 chr6 40545410 40545567 -148733987 - L2 LINE L2 -1605 1709 1542 1481 235 78 88 chr6 40545567 40545594 -148733960 - L2 LINE L2 -1928 1386 1360 2221 121 7 0 chr6 40545594 40545900 -148733654 + AluSx SINE Alu 1 308 -4 1481 235 78 88 chr6 40545900 40546713 -148732841 - L2 LINE L2 -1954 1360 554 2142 136 0 13 chr6 40547031 40547333 -148732221 - AluSx SINE Alu -14 298 1 211 136 0 0 chr6 40547772 40547816 -148731738 - MIR SINE MIR -83 125 82 1359 67 0 0 chr6 40547994 40548173 -148731381 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 252 190 7 70 chr6 40548263 40548347 -148731207 + MIR SINE MIR 83 162 -46 200 330 29 0 chr6 40548985 40549088 -148730466 + G-rich Low_complexity Low_complexity 1 106 0 687 221 139 89 chr6 40549910 40550226 -148729328 + MSTD LTR MaLR 3 334 -62 876 109 0 0 chr6 40550226 40550345 -148729209 - AluSx SINE Alu 0 309 191 1224 58 0 0 chr6 40550346 40550484 -148729070 - AluSx SINE Alu -172 141 4 291 153 0 51 chr6 40550859 40550918 -148728636 - Charlie7 DNA MER1_type -4 2608 2553 228 326 61 7 chr6 40551154 40551301 -148728253 + MIR SINE MIR 84 238 -24 2513 172 25 37 chr6 40552027 40552956 -148726598 + MER41-int LTR ERV1 3 1482 -4464 4317 138 50 42 chr6 40553014 40553828 -148725726 + MER41-int LTR ERV1 767 2265 -2615 1958 164 44 109 chr6 40553843 40554300 -148725254 + MER41-int LTR ERV1 2989 3415 -4122 1923 138 45 3 chr6 40554352 40554642 -148724912 - AluJo SINE Alu -10 302 1 1018 159 34 117 chr6 40554694 40555005 -148724549 + MER41-int LTR ERV1 1027 1362 -4584 453 81 0 0 chr6 40555005 40555067 -148724487 + (TA)n Simple_repeat Simple_repeat 2 63 0 2180 117 0 0 chr6 40555067 40555348 -148724206 - AluSc SINE Alu -28 281 1 1018 159 34 117 chr6 40555348 40555480 -148724074 + MER41-int LTR ERV1 1360 3005 -2941 2249 120 0 7 chr6 40556094 40556402 -148723152 + AluSg SINE Alu 1 306 -4 575 279 97 6 chr6 40556578 40556743 -148722811 + MER5A DNA MER1_type 9 188 -1 344 261 144 18 chr6 40557056 40557167 -148722387 + MER5A DNA MER1_type 64 188 -1 206 333 8 8 chr6 40557592 40557709 -148721845 - L2 LINE L2 -2365 949 833 517 203 123 44 chr6 40557733 40558049 -148721505 + HAL1 LINE L1 863 1203 -1304 * 618 280 65 39 chr6 40558048 40558384 -148721170 - L1M4 LINE L1 -1835 4311 3967 2078 117 3 3 chr6 40558384 40558699 -148720855 - AluSq SINE Alu 0 315 1 1602 175 60 30 chr6 40558735 40559066 -148720488 + MER58B DNA MER1_type 1 341 0 226 265 60 24 chr6 40559120 40559203 -148720351 - HAL1 LINE L1 -2108 399 314 217 284 8 50 chr6 40561210 40561324 -148718230 + MIR SINE MIR 30 140 -85 432 51 0 0 chr6 40561324 40561383 -148718171 + (TG)n Simple_repeat Simple_repeat 1 59 0 2317 95 3 0 chr6 40561877 40562172 -148717382 - AluSx SINE Alu -16 296 1 1217 203 18 0 chr6 40562225 40562442 -148717112 - MER58A DNA MER1_type -2 222 2 736 252 86 14 chr6 40562446 40562656 -148716898 + MIR SINE MIR 27 251 -11 1893 137 14 17 chr6 40562666 40562959 -148716595 + AluSx SINE Alu 2 293 -19 1991 123 32 0 chr6 40562963 40563279 -148716275 - AluSx SINE Alu 0 325 1 646 191 72 7 chr6 40563927 40564079 -148715475 - L1MD3 LINE L1 -2 7993 7832 839 253 183 16 chr6 40564277 40564739 -148714815 - L2 LINE L2 -10 3303 2771 899 121 29 40 chr6 40564746 40564920 -148714634 - L1MB3 LINE L1 -1 6182 6011 2240 111 7 0 chr6 40564920 40565218 -148714336 + AluSx SINE Alu 1 300 -12 476 218 6 51 chr6 40565231 40565270 -148714284 - L1MC4 LINE L1 0 8042 8003 1797 125 40 15 chr6 40565270 40565542 -148714012 + AluJb SINE Alu 20 298 -14 476 218 6 51 chr6 40565542 40565658 -148713896 - L1MC4 LINE L1 -39 8003 7894 352 221 142 0 chr6 40565719 40565832 -148713722 - L1MC4 LINE L1 -304 7738 7610 2013 92 21 4 chr6 40565843 40566124 -148713430 - AluSq SINE Alu -27 286 1 1056 68 0 8 chr6 40566126 40566259 -148713295 - AluSq/x SINE Alu -180 132 1 292 273 39 0 chr6 40566260 40566337 -148713217 - L1MC4 LINE L1 -560 7482 7403 2114 144 0 0 chr6 40566449 40566761 -148712793 - AluSx SINE Alu 0 312 1 1878 104 12 4 chr6 40567022 40567281 -148712273 + AluSx SINE Alu 42 302 -10 722 196 136 18 chr6 40567390 40567610 -148711944 - MIR SINE MIR 0 262 17 216 0 0 0 chr6 40567756 40567780 -148711774 + (TG)n Simple_repeat Simple_repeat 1 24 0 2127 130 0 0 chr6 40567780 40568061 -148711493 - AluSx SINE Alu -28 284 1 939 241 45 20 chr6 40568389 40568634 -148710920 + MIR SINE MIR 12 262 0 228 307 0 39 chr6 40569927 40570054 -148709500 + A-rich Low_complexity Low_complexity 3 124 0 181 294 35 12 chr6 40570482 40570567 -148708987 - L2 LINE L2 -30 3283 3197 25 51 0 0 chr6 40571704 40571743 -148707811 + AT_rich Low_complexity Low_complexity 1 39 0 185 318 176 0 chr6 40571753 40571838 -148707716 + L3 LINE CR1 1045 1144 -433 316 295 73 39 chr6 40571866 40572160 -148707394 + L3 LINE CR1 1211 1575 -2 203 152 0 0 chr6 40572489 40572522 -148707032 + GA-rich Low_complexity Low_complexity 2 34 0 2100 93 7 0 chr6 40572775 40573045 -148706509 - AluSx SINE Alu -40 272 1 2337 94 7 0 chr6 40573852 40574150 -148705404 + AluSg SINE Alu 1 300 -10 1079 259 82 56 chr6 40574705 40575326 -148704228 - L1MC4a LINE L1 -1875 5933 5297 853 270 178 14 chr6 40575377 40575639 -148703915 + L2 LINE L2 2473 2691 -622 1690 143 29 25 chr6 40575639 40575950 -148703604 - AluJo SINE Alu 0 312 1 853 270 178 14 chr6 40575950 40576401 -148703153 + L2 LINE L2 2691 3312 -1 3836 127 40 0 chr6 40576506 40576618 -148702936 + L1PA16 LINE L1 5521 5627 -568 285 29 0 0 chr6 40576618 40576652 -148702902 + (TA)n Simple_repeat Simple_repeat 1 34 0 3836 127 40 0 chr6 40576652 40577189 -148702365 + L1PA16 LINE L1 5627 6195 0 310 309 68 19 chr6 40577232 40577394 -148702160 - L1MC4a LINE L1 -1098 5048 4879 304 262 119 0 chr6 40577394 40577478 -148702076 + MER106A DNA MER1_type 1 94 -142 304 29 0 0 chr6 40577514 40577548 -148702006 - L1P LINE L1 -1844 4302 4269 315 205 27 98 chr6 40577548 40577660 -148701894 + MER106B DNA MER1_type 906 1009 -50 376 269 119 73 chr6 40577660 40578114 -148701440 - L1MC4a LINE L1 -1370 4776 4302 13908 96 12 3 chr6 40578315 40581060 -148698494 - L1PA8 LINE L1 0 6172 3401 9147 145 2 7 chr6 40581060 40582663 -148696891 - L1PA8 LINE L1 -3609 2537 942 207 0 0 0 chr6 40582675 40582698 -148696856 + (T)n Simple_repeat Simple_repeat 1 23 0 256 315 0 11 chr6 40583312 40583404 -148696150 + A-rich Low_complexity Low_complexity 2 92 0 22 35 0 0 chr6 40583755 40583784 -148695770 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 40583882 40583907 -148695647 + AT_rich Low_complexity Low_complexity 1 25 0 368 302 92 64 chr6 40584064 40585650 -148693904 - L1ME LINE L1 -350 5881 4246 612 158 20 0 chr6 40585810 40585911 -148693643 - U6 snRNA snRNA -4 103 1 605 309 107 32 chr6 40585986 40586417 -148693137 - L1ME LINE L1 -3903 2493 2031 386 306 56 25 chr6 40586694 40586890 -148692664 - HAL1 LINE L1 -829 1678 1477 730 278 63 39 chr6 40587316 40587650 -148691904 - MLT1J2 LTR MaLR -44 406 65 1714 189 10 86 chr6 40587658 40588146 -148691408 - MLT1D LTR MaLR 0 505 55 269 274 17 43 chr6 40590018 40590135 -148689419 - MIR SINE MIR -121 141 28 25 90 0 0 chr6 40590251 40590318 -148689236 + AT_rich Low_complexity Low_complexity 1 67 0 371 339 148 5 chr6 40590813 40591192 -148688362 - L2 LINE L2 -164 3108 2670 414 290 104 100 chr6 40591192 40591409 -148688145 - L2 LINE L2 -2696 618 403 1471 139 10 0 chr6 40591409 40591618 -148687936 + AluJo SINE Alu 86 296 -16 414 290 104 100 chr6 40591618 40591662 -148687892 - L2 LINE L2 -2911 403 361 1464 104 73 0 chr6 40591662 40591922 -148687632 - L1MA8 LINE L1 -5 6286 6008 414 290 104 100 chr6 40591922 40591933 -148687621 - L2 LINE L2 -2953 361 352 1893 147 7 20 chr6 40591933 40592226 -148687328 - AluSx SINE Alu -21 291 3 414 290 104 100 chr6 40592226 40592472 -148687082 - L2 LINE L2 -2962 352 96 454 286 143 5 chr6 40592785 40592981 -148686573 - MIR SINE MIR -1 261 39 1591 178 22 7 chr6 40593294 40593570 -148685984 + AluJo SINE Alu 1 280 -32 2140 124 41 3 chr6 40593710 40594074 -148685480 - L1 LINE L1 -1785 4361 3984 2270 99 0 30 chr6 40594085 40594387 -148685167 - AluSx SINE Alu -19 293 1 2522 87 0 0 chr6 40594557 40594866 -148684688 - AluSg SINE Alu -1 309 1 419 258 43 63 chr6 40595072 40595286 -148684268 + MIR SINE MIR 1 206 -44 389 333 47 0 chr6 40595307 40595436 -148684118 + L2 LINE L2 3137 3271 -1 2361 96 7 0 chr6 40596930 40597231 -148682323 + AluSp SINE Alu 1 303 -10 235 329 0 0 chr6 40597293 40597366 -148682188 - L1ME LINE L1 -321 5849 5777 210 293 80 0 chr6 40597373 40597448 -148682106 + MIR3 SINE MIR 124 204 -4 2471 83 3 0 chr6 40599624 40599926 -148679628 + AluY SINE Alu 1 303 -8 600 158 41 94 chr6 40599937 40600017 -148679537 - MIR SINE MIR -27 235 152 1267 112 79 0 chr6 40600017 40600232 -148679322 - MER46A DNA MER2_type -2 234 3 1936 155 7 23 chr6 40600232 40600401 -148679153 - AluSx SINE Alu -8 304 134 260 26 0 26 chr6 40600401 40600439 -148679115 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2345 89 0 0 chr6 40600439 40600720 -148678834 - AluY SINE Alu -30 281 1 1936 155 7 23 chr6 40600720 40600858 -148678696 - AluSx SINE Alu -176 136 1 600 158 41 94 chr6 40600858 40600947 -148678607 - MIR SINE MIR -108 154 74 863 177 55 11 chr6 40601838 40602019 -148677535 + MER5A DNA MER1_type 1 189 0 2677 52 0 0 chr6 40602022 40602330 -148677224 + AluY SINE Alu 1 308 -3 233 194 15 75 chr6 40602367 40602434 -148677120 - MIR SINE MIR -64 144 82 354 130 19 0 chr6 40605091 40605145 -148674409 - L2 LINE L2 -13 3300 3246 1990 139 33 12 chr6 40605518 40605848 -148673706 + MER1B DNA MER1_type 1 337 0 416 247 247 0 chr6 40606022 40606184 -148673370 - MIR SINE MIR 0 262 61 740 169 15 0 chr6 40606357 40606487 -148673067 - AluJb SINE Alu -5 307 176 2228 115 3 3 chr6 40606622 40606926 -148672628 - AluSx SINE Alu -8 304 1 233 283 0 0 chr6 40606967 40607020 -148672534 - L2 LINE L2 -6 3307 3255 315 318 0 38 chr6 40609764 40609896 -148669658 + C-rich Low_complexity Low_complexity 3 129 0 237 115 33 33 chr6 40609901 40609962 -148669592 + CT-rich Low_complexity Low_complexity 3 63 0 21 57 0 0 chr6 40610245 40610280 -148669274 + GC_rich Low_complexity Low_complexity 1 35 0 555 177 65 24 chr6 40612547 40612671 -148666883 + FLAM_A SINE Alu 1 129 -4 270 73 0 0 chr6 40614476 40614517 -148665037 + (TTG)n Simple_repeat Simple_repeat 1 41 0 2272 89 3 51 chr6 40618111 40618424 -148661130 + AluSp SINE Alu 1 298 -15 353 290 145 8 chr6 40625922 40626053 -148653501 - L2 LINE L2 -4 3309 3161 382 172 16 0 chr6 40626068 40626132 -148653422 - MER5A DNA MER1_type 0 189 125 636 178 0 0 chr6 40626132 40626239 -148653315 + FLAM_C SINE Alu 1 107 -36 457 190 0 0 chr6 40626244 40626323 -148653231 - MER5A DNA MER1_type -51 138 60 365 286 282 27 chr6 40626422 40626755 -148652799 - L2 LINE L2 -292 2980 2560 417 307 130 34 chr6 40627490 40627677 -148651877 + MIR SINE MIR 2 218 -44 1252 157 63 47 chr6 40627677 40627814 -148651740 - MER33 DNA MER1_type -2261 324 191 2491 81 0 0 chr6 40627814 40628112 -148651442 - AluSg SINE Alu -12 298 1 1252 157 63 47 chr6 40628112 40628292 -148651262 - MER33 DNA MER1_type -2394 191 2 417 307 130 34 chr6 40628292 40628342 -148651212 + MIR SINE MIR 218 262 0 204 143 0 0 chr6 40628672 40628714 -148650840 + (CTG)n Simple_repeat Simple_repeat 3 44 0 1192 114 0 33 chr6 40634330 40634514 -148645040 - AluSp SINE Alu -2 311 134 189 0 0 0 chr6 40634514 40634535 -148645019 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 706 79 18 18 chr6 40634566 40634680 -148644874 - AluY SINE Alu 0 311 198 352 130 19 0 chr6 40635225 40635279 -148644275 - L2 LINE L2 -13 3300 3246 2071 140 33 9 chr6 40635652 40635981 -148643573 + MER1B DNA MER1_type 1 337 0 391 241 247 0 chr6 40636155 40636317 -148643237 - MIR SINE MIR 0 262 61 770 169 15 0 chr6 40636490 40636620 -148642934 - AluJb SINE Alu -5 307 176 2321 99 3 0 chr6 40636755 40637057 -148642497 - AluY SINE Alu -8 303 1 2060 97 3 7 chr6 40637093 40637382 -148642172 - AluSx SINE Alu -24 288 1 2233 82 0 7 chr6 40639759 40640073 -148639481 - AluSg SINE Alu 0 312 1 408 139 38 13 chr6 40640486 40640565 -148638989 - MER5B DNA MER1_type -2 176 96 1435 167 29 78 chr6 40640565 40640724 -148638830 - AluJb SINE Alu -12 300 135 2273 112 0 0 chr6 40640724 40641027 -148638527 - AluSx SINE Alu -9 303 1 1932 52 4 4 chr6 40641035 40641265 -148638289 - AluY SINE Alu -8 303 74 1435 167 29 78 chr6 40641265 40641402 -148638152 - AluJb SINE Alu -184 128 10 481 233 0 0 chr6 40641410 40641513 -148638041 - MER5B DNA MER1_type -75 103 1 187 350 127 21 chr6 40641858 40642329 -148637225 - L2 LINE L2 -479 2835 2315 2311 93 3 0 chr6 40642806 40643097 -148636457 - AluSq SINE Alu -21 292 1 207 363 0 0 chr6 40643230 40643321 -148636233 + L2 LINE L2 3180 3270 -43 193 73 24 24 chr6 40646168 40646209 -148633345 + (CGG)n Simple_repeat Simple_repeat 2 42 0 257 281 45 22 chr6 40647075 40647164 -148632390 + MER102a DNA MER1_type 1 91 -239 2154 129 7 0 chr6 40647556 40647858 -148631696 + AluSx SINE Alu 1 304 -8 409 295 63 32 chr6 40647893 40648083 -148631471 - MER117 DNA MER1_type 0 197 2 296 299 11 0 chr6 40648800 40648887 -148630667 - MIR SINE MIR -119 143 56 508 100 12 0 chr6 40649083 40649163 -148630391 - L1MA5 LINE L1 -5 6295 6215 466 205 186 31 chr6 40650305 40650466 -148629088 + MER5A DNA MER1_type 4 189 0 461 182 0 13 chr6 40650858 40650935 -148628619 + AluJ/FLAM SINE Alu 2 77 -235 255 61 0 0 chr6 40650955 40650988 -148628566 + (TG)n Simple_repeat Simple_repeat 1 33 0 32 0 0 0 chr6 40651780 40651812 -148627742 + AT_rich Low_complexity Low_complexity 1 32 0 525 89 13 0 chr6 40652131 40652210 -148627344 - L1PA16 LINE L1 -9 6157 6078 31 44 0 0 chr6 40653120 40653165 -148626389 + AT_rich Low_complexity Low_complexity 1 45 0 2299 102 0 3 chr6 40653599 40653902 -148625652 - AluY SINE Alu -9 302 1 241 261 21 78 chr6 40653983 40654125 -148625429 - MIR SINE MIR -11 251 118 1735 175 7 11 chr6 40655585 40655904 -148623650 + AluJo SINE Alu 1 318 0 3252 89 20 0 chr6 40656601 40657052 -148622502 - LTR46 LTR ERV1 0 460 1 2110 95 25 7 chr6 40657532 40657815 -148621739 + AluSx SINE Alu 1 288 -24 311 0 26 0 chr6 40657820 40657859 -148621695 + (TG)n Simple_repeat Simple_repeat 2 41 0 299 232 0 145 chr6 40658739 40658877 -148620677 - L2 LINE L2 -3 3269 3152 614 176 9 0 chr6 40659486 40659594 -148619960 + L1PB4 LINE L1 6034 6142 -14 2338 88 0 16 chr6 40659647 40659781 -148619773 + AluSg SINE Alu 1 136 -174 2296 113 0 3 chr6 40659781 40660082 -148619472 + AluSx SINE Alu 1 300 -12 2338 88 0 16 chr6 40660082 40660253 -148619301 + AluSg SINE Alu 136 301 -9 1592 132 108 54 chr6 40660256 40660392 -148619162 + AluSx SINE Alu 1 128 -184 2136 81 3 55 chr6 40660392 40660700 -148618854 + AluY SINE Alu 1 292 -19 1592 132 108 54 chr6 40660700 40660858 -148618696 + AluSx SINE Alu 128 311 -1 302 377 0 0 chr6 40662513 40662680 -148616874 + (CCA)n Simple_repeat Simple_repeat 2 168 0 21 36 0 0 chr6 40665505 40665533 -148614021 + AT_rich Low_complexity Low_complexity 1 28 0 496 248 110 21 chr6 40666448 40666667 -148612887 - MER102a DNA MER1_type -4 326 92 3609 104 23 0 chr6 40667292 40667812 -148611742 + L1PA13 LINE L1 5627 6158 -5 1185 285 97 31 chr6 40668613 40669435 -148610119 - L2 LINE L2 -4 3309 2325 2072 140 15 50 chr6 40669567 40669966 -148609588 - L1MB8 LINE L1 -5 6173 5789 5865 116 11 3 chr6 40670040 40671449 -148608105 - L1PA13 LINE L1 0 6163 4739 878 89 73 0 chr6 40671566 40671689 -148607865 - AluY SINE Alu -179 132 1 1982 129 4 0 chr6 40672925 40673225 -148606329 - AluSx SINE Alu 0 301 1 551 255 98 14 chr6 40673487 40673707 -148605847 - MER102b DNA MER1_type -4 337 92 8725 109 7 5 chr6 40674098 40675323 -148604231 - L1P3 LINE L1 -5226 1235 8 231 228 0 0 chr6 40675498 40675555 -148603999 - L1M2 LINE L1 -3958 2891 2835 2016 148 0 19 chr6 40675793 40676111 -148603443 - AluSx SINE Alu 0 312 1 743 251 95 40 chr6 40676173 40676710 -148602844 - L1MEd LINE L1 -4722 1409 948 371 130 0 0 chr6 40676823 40676877 -148602677 - MSTA-int LTR MaLR -1597 54 1 2315 104 149 8 chr6 40676877 40677252 -148602302 - MSTA LTR MaLR 0 428 1 916 37 0 0 chr6 40677252 40677359 -148602195 + MER66A-int LTR ERV1 6570 6676 0 553 218 6 59 chr6 40677422 40677601 -148601953 + MER66A LTR ERV1 110 227 -251 485 176 0 0 chr6 40677701 40677775 -148601779 + MER66B LTR ERV1 413 486 0 2685 110 49 53 chr6 40677775 40677794 -148601760 + L1MA8 LINE L1 5762 5780 -511 570 67 0 0 chr6 40677794 40677869 -148601685 + (TA)n Simple_repeat Simple_repeat 2 76 0 2685 110 49 53 chr6 40677869 40678375 -148601179 + L1MA8 LINE L1 5780 6285 -6 1671 184 14 0 chr6 40678523 40678811 -148600743 + AluJb SINE Alu 1 292 -20 240 208 92 42 chr6 40678818 40678938 -148600616 + L1MEc LINE L1 2151 2276 -4120 4631 105 18 1 chr6 40678979 40679643 -148599911 - L1PB1 LINE L1 -1 6150 5476 13868 188 14 13 chr6 40680207 40683246 -148596308 - L1PB1 LINE L1 -692 5459 2420 294 167 0 17 chr6 40683362 40683422 -148596132 + AluJ/FLAM SINE Alu 1 59 -243 1773 103 4 12 chr6 40683465 40683718 -148595836 + AluSq SINE Alu 55 305 -8 671 205 8 8 chr6 40684010 40684123 -148595431 + FLAM_A SINE Alu 5 120 -182 243 0 0 0 chr6 40684123 40684150 -148595404 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2231 85 3 3 chr6 40684194 40684487 -148595067 + AluY SINE Alu 1 293 -18 2197 113 3 0 chr6 40684492 40684793 -148594761 + AluSg SINE Alu 1 302 -8 2229 92 0 35 chr6 40685239 40685555 -148593999 + AluY SINE Alu 1 305 -6 1644 59 87 0 chr6 40685809 40686028 -148593526 + AluY SINE Alu 59 296 -15 224 316 68 60 chr6 40686035 40686168 -148593386 - L2 LINE L2 -168 3104 2971 419 318 152 31 chr6 40686201 40686659 -148592895 - L2 LINE L2 -459 2855 2333 1894 122 20 14 chr6 40686659 40686954 -148592600 - AluSp SINE Alu -14 299 3 419 318 152 31 chr6 40686954 40686982 -148592572 - L2 LINE L2 -981 2333 2310 482 215 125 28 chr6 40686991 40687135 -148592419 - LTR33 LTR ERVL -361 160 3 1901 82 4 0 chr6 40687191 40687436 -148592118 + AluY SINE Alu 1 246 -65 1944 143 0 25 chr6 40687625 40687939 -148591615 - AluSx SINE Alu -6 306 1 2352 60 10 3 chr6 40688011 40688310 -148591244 - AluY SINE Alu -10 301 1 341 299 34 28 chr6 40688626 40688803 -148590751 - L2 LINE L2 -923 2391 2214 2260 88 7 0 chr6 40689159 40689456 -148590098 - AluSp SINE Alu -14 299 1 2410 84 0 0 chr6 40690126 40690435 -148589119 + AluSx SINE Alu 1 309 -3 42 0 0 0 chr6 40690437 40690479 -148589075 + AT_rich Low_complexity Low_complexity 1 42 0 2338 79 0 3 chr6 40690479 40690783 -148588771 + AluY SINE Alu 1 303 -8 2112 112 0 10 chr6 40692261 40692566 -148586988 - AluSx SINE Alu -10 302 1 188 255 326 0 chr6 40692630 40692728 -148586826 - MIR SINE MIR -16 246 117 228 305 9 19 chr6 40694799 40694904 -148584650 + CT-rich Low_complexity Low_complexity 4 107 0 22 0 0 0 chr6 40695568 40695590 -148583964 + AT_rich Low_complexity Low_complexity 1 22 0 1966 95 95 7 chr6 40696148 40696432 -148583122 - AluSg SINE Alu -1 309 1 373 303 125 7 chr6 40696885 40697037 -148582517 + MIR SINE MIR 19 188 -74 855 131 7 36 chr6 40697769 40697906 -148581648 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chr6 40697906 40697937 -148581617 + AT_rich Low_complexity Low_complexity 1 31 0 218 352 21 7 chr6 40698024 40698169 -148581385 + CT-rich Low_complexity Low_complexity 2 148 0 369 305 31 8 chr6 40698747 40698875 -148580679 + MIR3 SINE MIR 15 145 -63 210 330 19 10 chr6 40701329 40701432 -148578122 + G-rich Low_complexity Low_complexity 2 105 0 1207 272 47 22 chr6 40704654 40705157 -148574397 - L1ME3A LINE L1 -63 6107 5535 680 308 142 41 chr6 40705313 40705940 -148573614 - L2 LINE L2 0 3313 2751 1947 152 0 7 chr6 40705940 40706243 -148573311 + AluJo SINE Alu 1 301 -11 680 308 142 41 chr6 40706243 40706663 -148572891 - L2 LINE L2 -562 2751 2165 266 133 0 0 chr6 40706689 40706734 -148572820 - MER5B DNA MER1_type -15 163 119 403 253 0 0 chr6 40706736 40706835 -148572719 - MER3 DNA MER1_type -76 133 35 2250 98 3 3 chr6 40706846 40707151 -148572403 + AluSx SINE Alu 1 305 -7 421 316 77 37 chr6 40707151 40707412 -148572142 - L2 LINE L2 -1325 1989 1715 2193 102 0 40 chr6 40707417 40707739 -148571815 - AluSx SINE Alu -3 309 1 1791 223 63 98 chr6 40707741 40707931 -148571623 - L1ME3 LINE L1 -12 6150 5955 2180 124 0 0 chr6 40707931 40708238 -148571316 - AluSc SINE Alu -2 307 1 1791 223 63 98 chr6 40708238 40708854 -148570700 - L1ME3 LINE L1 -207 5955 5372 1824 163 3 3 chr6 40708856 40709150 -148570404 + AluJo SINE Alu 3 296 -16 1190 129 29 43 chr6 40709156 40709289 -148570265 + AluSx SINE Alu 5 135 -177 2198 86 3 3 chr6 40709289 40709581 -148569973 + AluY SINE Alu 1 292 -19 1190 129 29 43 chr6 40709581 40709656 -148569898 + AluSx SINE Alu 135 210 -102 301 246 26 70 chr6 40709670 40709775 -148569779 - L1ME3 LINE L1 -781 5381 5280 2190 92 16 0 chr6 40709775 40710078 -148569476 - AluSq SINE Alu -5 308 1 1855 164 10 6 chr6 40710121 40710432 -148569122 - AluJb SINE Alu 0 312 1 685 268 42 65 chr6 40710450 40710473 -148569081 - L1ME3 LINE L1 -1042 5104 5082 2122 126 0 0 chr6 40710473 40710774 -148568780 + AluSx SINE Alu 1 301 -11 685 268 42 65 chr6 40710774 40711104 -148568450 - L1ME3 LINE L1 -1064 5082 4759 606 196 23 60 chr6 40711215 40711348 -148568206 + FLAM_A SINE Alu 1 128 -5 2079 114 7 0 chr6 40711352 40711641 -148567913 + AluSx SINE Alu 7 297 -15 390 291 119 84 chr6 40711740 40712097 -148567457 - L2 LINE L2 0 3313 2893 2201 97 3 0 chr6 40712097 40712420 -148567134 + AluSp SINE Alu 1 324 0 390 291 119 84 chr6 40712420 40712587 -148566967 - L2 LINE L2 -420 2893 2733 366 242 73 73 chr6 40713125 40713249 -148566305 - MER91A DNA MER1_type -3 193 70 556 277 125 40 chr6 40715966 40716342 -148563212 - L3 LINE CR1 -78 1499 1092 246 229 14 0 chr6 40716465 40716535 -148563019 - L1ME4a LINE L1 -6 6115 6045 553 281 120 56 chr6 40716575 40716752 -148562802 - L3 LINE CR1 -730 847 683 2023 126 0 19 chr6 40716752 40717070 -148562484 - AluJb SINE Alu 0 312 1 553 281 120 56 chr6 40717070 40717251 -148562303 - L3 LINE CR1 -894 683 466 368 335 41 46 chr6 40717514 40717711 -148561843 - L1ME4a LINE L1 0 6121 5926 1320 123 0 10 chr6 40718155 40718350 -148561204 - AluSq SINE Alu 0 313 121 1076 191 5 5 chr6 40718577 40718765 -148560789 + MER5A DNA MER1_type 1 188 -1 2102 116 14 0 chr6 40719102 40719395 -148560159 + AluSq SINE Alu 1 297 -16 2461 60 3 0 chr6 40719466 40719766 -148559788 + AluSp SINE Alu 1 301 -12 324 319 53 18 chr6 40720653 40720766 -148558788 + L2 LINE L2 3188 3304 -9 864 217 48 10 chr6 40721138 40721345 -148558209 + MIR SINE MIR 28 242 -20 219 109 43 43 chr6 40722914 40722960 -148556594 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr6 40723209 40723261 -148556293 + GC_rich Low_complexity Low_complexity 1 52 0 300 324 71 19 chr6 40726525 40726735 -148552819 - L2 LINE L2 -203 3069 2849 1704 112 13 69 chr6 40726921 40727224 -148552330 + AluJo SINE Alu 11 296 -16 416 339 149 23 chr6 40727505 40728036 -148551518 - L2 LINE L2 -1104 2210 1613 732 318 5 5 chr6 40728282 40728477 -148551077 - MER91A DNA MER1_type 0 196 2 882 225 43 10 chr6 40730153 40730362 -148549192 + MIR SINE MIR 1 216 -46 2473 74 0 0 chr6 40730363 40730674 -148548880 + AluY SINE Alu 1 311 0 676 195 87 7 chr6 40731990 40732139 -148547415 + MIR SINE MIR 76 236 -26 563 98 0 33 chr6 40732244 40732336 -148547218 + 5S rRNA rRNA 2 90 -31 2186 112 3 6 chr6 40732393 40732706 -148546848 - AluSx SINE Alu 0 312 1 842 46 38 8 chr6 40732717 40732848 -148546706 + (TTTC)n Simple_repeat Simple_repeat 4 138 0 2094 108 0 0 chr6 40732857 40733126 -148546428 - AluSx SINE Alu -43 269 1 269 300 51 87 chr6 40733767 40733859 -148545695 + MIR3 SINE MIR 1 95 -166 2349 103 0 0 chr6 40733859 40734171 -148545383 - AluSx SINE Alu 0 312 1 269 300 51 87 chr6 40734171 40734288 -148545266 + MIR3 SINE MIR 95 203 -58 1611 271 157 23 chr6 40735131 40735891 -148543663 - L2 LINE L2 0 3313 2375 2178 92 3 0 chr6 40735891 40736184 -148543370 + AluSp SINE Alu 1 294 -19 1611 271 157 23 chr6 40736184 40736379 -148543175 - L2 LINE L2 -938 2375 2208 1917 102 40 30 chr6 40736548 40736852 -148542702 + AluSx SINE Alu 2 308 -4 1597 202 39 30 chr6 40737789 40737903 -148541651 - Charlie4a DNA MER1_type -1487 474 363 1990 100 71 4 chr6 40737903 40738183 -148541371 - AluSq SINE Alu -14 299 1 1597 202 39 30 chr6 40738183 40738504 -148541050 - Charlie4a DNA MER1_type -1598 363 35 1939 122 40 14 chr6 40739005 40739301 -148540253 + AluSg SINE Alu 7 310 0 668 215 71 18 chr6 40741413 40741638 -148537916 - L1ME1 LINE L1 -119 6047 5806 303 226 164 7 chr6 40743519 40743665 -148535889 - L1MC5 LINE L1 -6 7955 7787 955 30 15 15 chr6 40743684 40743815 -148535739 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 1751 145 14 21 chr6 40743817 40744100 -148535454 - AluJb SINE Alu -31 281 1 1274 198 67 0 chr6 40744116 40744444 -148535110 - L1MB7 LINE L1 -9 6175 5826 279 0 0 0 chr6 40744461 40744492 -148535062 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1631 182 0 7 chr6 40744492 40744772 -148534782 - AluJo SINE Alu -24 288 11 328 239 49 84 chr6 40744834 40744942 -148534612 - L1MC5 LINE L1 -175 7786 7676 1957 121 6 29 chr6 40744942 40745061 -148534493 + AluSx SINE Alu 1 121 -191 183 42 0 0 chr6 40745061 40745085 -148534469 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1957 121 6 29 chr6 40745085 40745280 -148534274 + AluSx SINE Alu 121 308 -4 328 239 49 84 chr6 40745280 40745434 -148534120 - L1MC5 LINE L1 -285 7676 7533 757 279 5 0 chr6 40745441 40745631 -148533923 - L2 LINE L2 -239 3074 2884 265 272 71 112 chr6 40746294 40746380 -148533174 + MIR SINE MIR 20 97 -165 2291 97 0 3 chr6 40746380 40746688 -148532866 + AluSx SINE Alu 3 309 -3 265 272 71 112 chr6 40746688 40746770 -148532784 + MIR SINE MIR 97 181 -81 2209 107 0 25 chr6 40747468 40747786 -148531768 - AluSx SINE Alu -2 310 1 2215 71 7 0 chr6 40747794 40748118 -148531436 - AluY SINE Alu 0 326 1 557 294 165 47 chr6 40749794 40749953 -148529601 + L1ME4a LINE L1 5712 5851 -270 2121 112 7 0 chr6 40749953 40750248 -148529306 + AluSx SINE Alu 1 297 -15 557 294 165 47 chr6 40750248 40750452 -148529102 + L1ME4a LINE L1 5851 6118 -3 2345 91 10 0 chr6 40750530 40750839 -148528715 - AluSp SINE Alu -1 312 1 2290 115 0 0 chr6 40751443 40751755 -148527799 - AluSx SINE Alu 0 312 1 328 351 56 16 chr6 40752030 40752281 -148527273 - L1MB7 LINE L1 -297 5824 5564 204 281 56 11 chr6 40753137 40753226 -148526328 - L2 LINE L2 -284 2988 2896 216 271 77 82 chr6 40753412 40753582 -148525972 - L2 LINE L2 -653 2661 2493 394 245 49 10 chr6 40755172 40755274 -148524280 - MER5A DNA MER1_type -80 109 4 247 321 109 60 chr6 40755489 40755545 -148524009 - L2 LINE L2 0 3272 3220 2525 224 63 0 chr6 40755545 40756120 -148523434 - MER90 LTR ERV1 0 614 4 247 321 109 60 chr6 40756120 40756430 -148523124 - L2 LINE L2 -52 3220 2888 236 235 71 31 chr6 40756610 40756708 -148522846 - L2 LINE L2 -653 2661 2560 257 195 168 121 chr6 40758325 40758411 -148521143 - MER5A DNA MER1_type -21 168 71 2210 106 3 3 chr6 40758411 40758722 -148520832 - AluY SINE Alu 0 311 1 257 195 168 121 chr6 40758722 40758784 -148520770 - MER5A DNA MER1_type -118 71 13 1791 168 54 3 chr6 40758793 40759144 -148520410 - L1MB3 LINE L1 -2 6181 5813 830 147 0 22 chr6 40759144 40759270 -148520284 - FLAM_C SINE Alu -187 125 1 736 180 7 13 chr6 40759270 40759420 -148520134 - L1MB3 LINE L1 -340 5831 5683 199 267 67 38 chr6 40759999 40760104 -148519450 - L2 LINE L2 -653 2661 2554 472 348 48 5 chr6 40761908 40762118 -148517436 + MIR SINE MIR 12 230 -32 433 311 30 7 chr6 40763357 40763492 -148516062 + MIR SINE MIR 16 153 -55 546 146 27 64 chr6 40771954 40772064 -148507490 + FLAM_C SINE Alu 35 140 -3 201 158 0 0 chr6 40772430 40772468 -148507086 + (CAG)n Simple_repeat Simple_repeat 1 38 0 352 214 24 0 chr6 40772955 40773039 -148506515 - MER94 DNA DNA -16 118 33 268 317 50 20 chr6 40773078 40773179 -148506375 - MIR SINE MIR -27 235 132 550 329 93 66 chr6 40774365 40774730 -148504824 + L2 LINE L2 2898 3272 0 217 365 187 29 chr6 40774952 40775193 -148504361 + L3 LINE CR1 674 952 -625 188 291 35 23 chr6 40777466 40777552 -148502002 + L2 LINE L2 2174 2260 -1054 808 154 0 22 chr6 40778027 40778163 -148501391 + FLAM_C SINE Alu 1 133 0 194 306 16 97 chr6 40779786 40779910 -148499644 - L2 LINE L2 -595 2719 2606 336 281 167 9 chr6 40780588 40780702 -148498852 - MIR SINE MIR -59 203 72 221 296 17 35 chr6 40785107 40785222 -148494332 + C-rich Low_complexity Low_complexity 2 114 0 185 271 127 25 chr6 40787047 40787165 -148492389 + L2 LINE L2 3141 3270 -2 201 39 0 0 chr6 40789075 40789101 -148490453 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 471 194 16 8 chr6 40792496 40792625 -148486929 + CT-rich Low_complexity Low_complexity 3 132 0 1452 167 59 42 chr6 40793350 40793637 -148485917 + AluJo SINE Alu 1 292 -20 2089 135 20 0 chr6 40793699 40793996 -148485558 + AluSx SINE Alu 1 303 -9 2030 117 13 30 chr6 40794000 40794138 -148485416 + AluSx SINE Alu 1 140 -172 2402 77 3 26 chr6 40794138 40794448 -148485106 + AluY SINE Alu 1 303 -8 2030 117 13 30 chr6 40794448 40794608 -148484946 + AluSx SINE Alu 140 294 -18 5861 76 25 40 chr6 40794748 40796131 -148483423 + SVA Other Other 52 1009 -377 749 71 20 0 chr6 40796184 40796283 -148483271 + AluSq/x SINE Alu 32 132 -180 2221 114 0 7 chr6 40796286 40796592 -148482962 + AluSc SINE Alu 1 304 -5 1333 206 0 114 chr6 40797001 40797351 -148482203 - AluSx SINE Alu -2 310 1 2023 132 17 0 chr6 40797488 40797784 -148481770 - AluJb SINE Alu -11 301 1 351 340 19 44 chr6 40797861 40798020 -148481534 - MER5A DNA MER1_type 0 189 35 240 294 171 40 chr6 40798270 40798569 -148480985 + L2 LINE L2 2153 2490 -824 313 222 214 34 chr6 40805166 40805283 -148474271 + MIR3 SINE MIR 55 192 -16 1756 185 0 31 chr6 40805381 40805700 -148473854 + AluJb SINE Alu 1 309 -3 259 305 19 38 chr6 40806077 40806182 -148473372 - MIR SINE MIR -25 237 135 304 289 90 60 chr6 40806583 40806639 -148472915 - L1ME LINE L1 -509 5657 5604 2388 100 0 3 chr6 40806639 40806949 -148472605 - AluSc SINE Alu 0 309 1 304 289 90 60 chr6 40806949 40807224 -148472330 - L1ME LINE L1 -562 5604 5316 531 306 0 0 chr6 40807225 40807346 -148472208 - MIR SINE MIR -128 134 14 375 336 0 31 chr6 40810776 40810904 -148468650 + MER91B DNA MER1_type 12 135 -55 344 318 11 0 chr6 40810904 40810992 -148468562 + MER91B DNA MER1_type 100 188 -2 210 311 84 42 chr6 40811922 40812041 -148467513 - MER5B DNA MER1_type -54 124 1 250 326 54 8 chr6 40813555 40813684 -148465870 + L2 LINE L2 2120 2254 -1060 244 337 102 0 chr6 40815183 40815281 -148464273 + MIR3 SINE MIR 95 202 -6 1372 120 0 57 chr6 40815411 40815620 -148463934 + AluSx SINE Alu 1 197 -115 2293 115 3 0 chr6 40815772 40816077 -148463477 - AluSx SINE Alu -6 306 1 1969 195 55 40 chr6 40816079 40816595 -148462959 - L1MDa LINE L1 -5315 1228 684 1711 218 66 2 chr6 40816604 40817026 -148462528 - L1MDa LINE L1 -6058 482 34 418 208 30 10 chr6 40817034 40817135 -148462419 + L1M4 LINE L1 5565 5667 -511 2601 76 0 3 chr6 40817135 40817449 -148462105 + AluSp SINE Alu 1 313 0 798 380 121 19 chr6 40818679 40819477 -148460077 - L2 LINE L2 0 3313 2325 688 320 117 7 chr6 40820728 40821165 -148458389 - L2 LINE L2 -1009 2305 1821 231 36 0 0 chr6 40821304 40821332 -148458222 + (TA)n Simple_repeat Simple_repeat 2 29 0 553 287 90 97 chr6 40821393 40821972 -148457582 + L1MDa LINE L1 1369 2138 -1315 2904 117 29 22 chr6 40821972 40822461 -148457093 + L1MA3 LINE L1 5814 6305 0 553 287 90 97 chr6 40822461 40822813 -148456741 + L1MDa LINE L1 2138 2491 -962 1213 208 23 40 chr6 40822815 40823118 -148456436 + AluJb SINE Alu 1 298 -4 220 189 0 0 chr6 40823120 40823157 -148456397 + GA-rich Low_complexity Low_complexity 6 42 0 415 355 25 39 chr6 40823308 40823458 -148456096 + L1MDa LINE L1 2373 2519 -4202 2727 0 0 0 chr6 40823458 40823741 -148455813 - AluYa5 SINE Alu -12 299 17 415 355 25 39 chr6 40823741 40823869 -148455685 + L1MDa LINE L1 2519 2647 -4074 1177 286 100 100 chr6 40823893 40823999 -148455555 + L1MDa LINE L1 2594 2699 -3841 2199 132 3 0 chr6 40823999 40824294 -148455260 + AluSq SINE Alu 1 296 -17 1177 286 100 100 chr6 40824294 40825194 -148454360 + L1MDa LINE L1 2698 3660 -2880 213 121 0 0 chr6 40825317 40825350 -148454204 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 936 216 46 63 chr6 40825507 40825858 -148453696 - MER87 LTR ERV1 -1 540 196 1625 96 0 0 chr6 40826277 40826475 -148453079 + AluSx SINE Alu 1 198 -114 4293 72 49 8 chr6 40826475 40827085 -148452469 - PABL_A LTR ERV1 -25 635 1 316 172 71 50 chr6 40827827 40827926 -148451628 - L1M4c LINE L1 -5336 1048 948 1024 198 66 52 chr6 40828393 40828853 -148450701 + L1MDa LINE L1 2524 2985 -3555 910 296 79 35 chr6 40828853 40829257 -148450297 - L2 LINE L2 -303 3010 2590 2024 155 3 7 chr6 40829594 40829898 -148449656 - AluJo SINE Alu -9 303 1 1044 191 108 0 chr6 40829898 40830073 -148449481 - MER58B DNA MER1_type -2118 302 95 279 0 0 0 chr6 40830073 40830104 -148449450 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1044 191 108 0 chr6 40830104 40830159 -148449395 - MER58B DNA MER1_type -2325 95 47 1714 149 35 24 chr6 40830338 40830626 -148448928 - AluJo SINE Alu -16 296 6 1951 147 17 3 chr6 40830733 40831033 -148448521 + AluJb SINE Alu 1 304 -8 909 135 0 0 chr6 40832299 40832425 -148447129 - FLAM_C SINE Alu -7 126 1 655 283 74 13 chr6 40832735 40832965 -148446589 - MIR SINE MIR -16 246 3 2330 94 0 13 chr6 40833466 40833765 -148445789 - AluSq SINE Alu -18 295 1 180 0 0 0 chr6 40834202 40834222 -148445332 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr6 40834985 40835016 -148444538 + AT_rich Low_complexity Low_complexity 1 31 0 918 101 7 50 chr6 40835399 40835538 -148444016 + FLAM_C SINE Alu 1 133 0 1111 51 0 0 chr6 40835995 40836132 -148443422 + L1PA3 LINE L1 6016 6152 -3 32 0 0 0 chr6 40836132 40836164 -148443390 + AT_rich Low_complexity Low_complexity 1 32 0 223 320 96 29 chr6 40837149 40837421 -148442133 + L2 LINE L2 1457 1746 -1568 487 269 9 0 chr6 40837603 40837711 -148441843 + MIR SINE MIR 5 113 -149 1966 123 39 0 chr6 40837787 40838071 -148441483 + AluSx SINE Alu 1 295 -17 714 117 13 84 chr6 40838181 40838286 -148441268 + L1MB7 LINE L1 6031 6123 -61 2233 101 0 7 chr6 40838286 40838583 -148440971 - AluSx SINE Alu -17 295 1 714 117 13 84 chr6 40838583 40838631 -148440923 + L1MB7 LINE L1 6123 6173 -11 258 284 43 17 chr6 40838631 40838747 -148440807 - L2 LINE L2 -1490 1824 1706 799 228 93 36 chr6 40838764 40838851 -148440703 - L1MC5 LINE L1 -47 7914 7833 2076 117 0 4 chr6 40838851 40839132 -148440422 + AluSx SINE Alu 16 295 -17 799 228 93 36 chr6 40839132 40839199 -148440355 - L1MC5 LINE L1 -128 7833 7771 339 25 0 0 chr6 40839199 40839239 -148440315 + (ATATG)n Simple_repeat Simple_repeat 2 41 0 799 228 93 36 chr6 40839239 40839469 -148440085 - L1MC5 LINE L1 -190 7771 7507 701 183 6 32 chr6 40839476 40839644 -148439910 - L1MC3 LINE L1 -1 7765 6159 2289 101 0 0 chr6 40839644 40839931 -148439623 + AluSx SINE Alu 1 287 -25 355 167 122 0 chr6 40939937 40940027 -148339527 + L2 LINE L2 643 743 -2571 4409 261 138 26 chr6 40940044 40940981 -148338573 + L2 LINE L2 971 1802 -1512 1746 176 90 9 chr6 40940981 40941327 -148338227 + MLT1A2 LTR MaLR 1 374 0 4409 261 138 26 chr6 40941327 40942014 -148337540 + L2 LINE L2 1802 2777 -537 985 197 19 5 chr6 40942041 40942249 -148337305 - MER20 DNA MER1_type -8 211 1 2702 132 2 14 chr6 40942262 40942686 -148336868 - L1P3 LINE L1 -6042 419 1 1258 141 4 40 chr6 40942694 40942943 -148336611 - L1MA5 LINE L1 -247 6053 5814 * 3027 259 106 18 chr6 40942935 40944201 -148335353 - L1M4c LINE L1 -3940 2444 1040 2853 19 0 0 chr6 40944201 40944512 -148335042 - AluYa5 SINE Alu 0 311 1 3027 259 106 18 chr6 40944512 40944660 -148334894 - L1M4c LINE L1 -5344 1040 906 3829 252 62 7 chr6 40944674 40946021 -148333533 + L1M4 LINE L1 2220 3639 -2507 2361 103 3 0 chr6 40946622 40946922 -148332632 + AluSp SINE Alu 1 301 -12 1445 230 18 0 chr6 40947913 40948256 -148331298 + L1MB5 LINE L1 5817 6165 -9 1980 167 27 3 chr6 40949384 40949749 -148329805 - MLT1B LTR MaLR -16 374 1 180 222 256 33 chr6 40949756 40949846 -148329708 - MIR SINE MIR -124 138 29 524 270 0 0 chr6 40949934 40950045 -148329509 + MER81 DNA DNA 3 113 -1 195 302 222 5 chr6 40950459 40950648 -148328906 - L2 LINE L2 -239 3074 2845 2329 126 113 13 chr6 40952146 40952535 -148327019 - MSTA LTR MaLR 0 428 1 210 318 47 28 chr6 40952639 40952746 -148326808 - MIR SINE MIR -10 252 144 313 266 11 11 chr6 40952876 40952970 -148326584 - L1M4 LINE L1 -1308 4838 4745 561 269 91 47 chr6 40953001 40953315 -148326239 + L1MCa LINE L1 1474 1990 -4513 1073 233 26 72 chr6 40953320 40953697 -148325857 - L1M4 LINE L1 -2002 4144 3785 1672 257 56 13 chr6 40953752 40954358 -148325196 + L1M4 LINE L1 4650 5281 -865 1782 180 3 22 chr6 40954878 40955195 -148324359 - AluJb SINE Alu -1 311 1 180 245 0 0 chr6 40955528 40955581 -148323973 + (CA)n Simple_repeat Simple_repeat 1 53 0 260 185 0 15 chr6 40955793 40955858 -148323696 + GA-rich Low_complexity Low_complexity 4 67 0 936 235 35 0 chr6 40957037 40957237 -148322317 - MER3 DNA MER1_type 0 209 3 900 242 53 25 chr6 40957772 40958016 -148321538 - MIR SINE MIR 0 262 12 2368 81 14 0 chr6 40958228 40958524 -148321030 + AluSp SINE Alu 1 300 -13 1399 183 88 14 chr6 40958712 40958997 -148320557 - AluJb SINE Alu -6 306 1 594 144 0 0 chr6 40959406 40959496 -148320058 + FRAM SINE Alu 64 153 -23 382 250 56 7 chr6 40959705 40959849 -148319705 - L1MC4a LINE L1 -1936 5872 5722 300 311 25 8 chr6 40959889 40960011 -148319543 - L2 LINE L2 0 3313 3190 601 213 48 132 chr6 40960129 40960195 -148319359 - MER45C DNA AcHobo -629 952 882 731 169 0 0 chr6 40960195 40960313 -148319241 + FLAM_C SINE Alu 1 118 -15 601 213 48 132 chr6 40960313 40960422 -148319132 - MER45C DNA AcHobo -699 882 806 2581 61 0 3 chr6 40960422 40960734 -148318820 - AluY SINE Alu 0 311 1 601 213 48 132 chr6 40960734 40960830 -148318724 - MER45C DNA AcHobo -775 806 703 1260 211 11 15 chr6 40960904 40961174 -148318380 - MER45C DNA AcHobo -684 269 1 410 305 93 7 chr6 40961255 40961406 -148318148 + MIR SINE MIR 97 260 -2 2357 84 10 3 chr6 40961741 40962052 -148317502 - AluSq SINE Alu 0 313 1 2625 58 0 6 chr6 40962060 40962373 -148317181 - AluY SINE Alu 0 311 1 479 225 107 53 chr6 40962673 40962860 -148316694 + L3 LINE CR1 1265 1461 -116 399 257 47 74 chr6 40963729 40963764 -148315790 + MIR SINE MIR 84 118 -144 2538 60 7 3 chr6 40963764 40964066 -148315488 - AluSp SINE Alu -10 303 1 399 257 47 74 chr6 40964066 40964178 -148315376 + MIR SINE MIR 118 227 -35 276 231 130 0 chr6 40964219 40964327 -148315227 + L2 LINE L2 3192 3313 0 2103 88 41 17 chr6 40964502 40964796 -148314758 - AluSc SINE Alu -8 301 1 1065 66 0 29 chr6 40964796 40964933 -148314621 - AluSg SINE Alu -176 134 2 325 258 31 47 chr6 40965407 40965535 -148314019 - MIR SINE MIR -73 189 64 1290 181 0 5 chr6 40965999 40966203 -148313351 + AluSx SINE Alu 1 203 -109 2064 76 36 11 chr6 40966376 40966674 -148312880 - AluY SINE Alu 0 305 1 1702 153 35 0 chr6 40966760 40967014 -148312540 + AluSx SINE Alu 1 263 -49 225 65 0 0 chr6 40967017 40967048 -148312506 + (TA)n Simple_repeat Simple_repeat 2 32 0 2254 121 0 3 chr6 40967115 40967420 -148312134 - AluSg SINE Alu -6 304 1 200 35 35 0 chr6 40967421 40967450 -148312104 + (TTC)n Simple_repeat Simple_repeat 1 30 0 715 169 73 0 chr6 40967450 40967574 -148311980 - FLAM_C SINE Alu 0 133 1 1113 200 140 4 chr6 40967683 40967814 -148311740 + AluSp SINE Alu 1 113 -190 1818 113 20 4 chr6 40967814 40968062 -148311492 + AluSx SINE Alu 1 252 -60 1113 200 140 4 chr6 40968062 40968195 -148311359 + AluSp SINE Alu 113 301 -2 2163 123 14 0 chr6 40968404 40968697 -148310857 + AluSx SINE Alu 1 297 -15 194 229 36 84 chr6 40968736 40968819 -148310735 - L2 LINE L2 -1884 1430 1352 1819 155 54 0 chr6 40969138 40969440 -148310114 + AluSx SINE Alu 1 317 0 410 299 79 6 chr6 40970049 40970226 -148309328 + MIR SINE MIR 73 262 0 277 268 37 37 chr6 40970442 40970524 -148309030 - L2 LINE L2 -64 3249 3168 1310 158 10 5 chr6 40970565 40970774 -148308780 - AluJb SINE Alu -15 297 88 291 114 0 0 chr6 40970783 40970827 -148308727 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1201 92 7 0 chr6 40970849 40971001 -148308553 - AluSx SINE Alu -155 157 5 292 91 0 36 chr6 40971025 40971080 -148308474 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 317 355 103 0 chr6 40971124 40971358 -148308196 - L2 LINE L2 -160 3112 2855 * 413 246 77 23 chr6 40971348 40971478 -148308076 + MIR SINE MIR 15 151 -111 1816 121 7 85 chr6 40971881 40972215 -148307339 - AluSx SINE Alu 0 310 1 526 174 97 121 chr6 40972330 40972537 -148307017 + MER46C DNA MER2_type 1 202 -136 2183 102 17 0 chr6 40972914 40973209 -148306345 - AluSp SINE Alu -12 301 2 1810 132 108 41 chr6 40973653 40973995 -148305559 + MLT1A1 LTR MaLR 1 365 0 2402 72 3 16 chr6 40974072 40974376 -148305178 - AluY SINE Alu -11 300 1 2352 63 0 3 chr6 40974776 40975089 -148304465 + AluY SINE Alu 1 312 0 242 375 42 7 chr6 40975177 40975321 -148304233 + MIR SINE MIR 47 195 -67 2175 79 10 26 chr6 40975485 40975839 -148303715 + AluSg SINE Alu 1 310 0 2258 120 0 19 chr6 40976427 40976743 -148302811 + AluSq SINE Alu 1 310 -3 1778 96 12 20 chr6 40977881 40978131 -148301423 - AluSp SINE Alu -6 307 60 1992 209 95 62 chr6 40978134 40978726 -148300828 + MER20B DNA MER1_type 84 702 -81 1920 102 44 18 chr6 40978726 40979001 -148300553 - AluSx SINE Alu -17 295 14 1992 209 95 62 chr6 40979001 40979082 -148300472 + MER20B DNA MER1_type 702 779 -4 378 0 0 0 chr6 40979235 40979277 -148300277 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 248 0 75 chr6 40980043 40980176 -148299378 + C-rich Low_complexity Low_complexity 4 126 0 249 182 15 45 chr6 40980273 40980339 -148299215 + G-rich Low_complexity Low_complexity 4 67 0 26 0 0 0 chr6 40980903 40980929 -148298625 + GC_rich Low_complexity Low_complexity 1 26 0 549 247 29 47 chr6 40983647 40983817 -148295737 + MER69 DNA AcHobo 1 167 -1059 316 147 160 0 chr6 40983819 40983894 -148295660 + MER69 DNA AcHobo 2438 2524 -2 309 269 0 67 chr6 40985007 40985156 -148294398 + CT-rich Low_complexity Low_complexity 2 140 0 * 331 335 0 22 chr6 40985050 40985232 -148294322 + C-rich Low_complexity Low_complexity 1 178 0 339 217 14 14 chr6 40987116 40987185 -148292369 - MER5A DNA MER1_type -2 187 119 252 93 37 19 chr6 40990368 40990422 -148289132 + GA-rich Low_complexity Low_complexity 1 55 0 506 274 67 18 chr6 40993016 40993180 -148286374 - MIR SINE MIR -78 184 13 742 165 8 15 chr6 40993597 40993730 -148285824 + FLAM_C SINE Alu 1 132 -1 890 226 16 5 chr6 40994081 40994267 -148285287 - MER5A DNA MER1_type 0 189 2 856 158 28 79 chr6 40994315 40994492 -148285062 + MER20 DNA MER1_type 51 218 -1 725 251 63 26 chr6 40995217 40995408 -148284146 + MIR SINE MIR 64 261 -1 194 330 102 53 chr6 40995469 40995653 -148283901 - L2 LINE L2 -837 2477 2275 2259 104 3 0 chr6 40995653 40995962 -148283592 + AluSg SINE Alu 1 310 0 194 330 102 53 chr6 40995962 40996041 -148283513 - L2 LINE L2 -1039 2275 2201 268 306 200 19 chr6 40996067 40996227 -148283327 - MIR SINE MIR -25 237 49 1131 30 0 0 chr6 40996254 40996386 -148283168 - AluY SINE Alu -179 132 1 1261 163 21 118 chr6 40996386 40996551 -148283003 - AluJo SINE Alu -1 301 122 1925 145 0 3 chr6 40996551 40996848 -148282706 - AluSg SINE Alu -14 296 1 1261 163 21 118 chr6 40996848 40996860 -148282694 - AluJo SINE Alu -180 122 110 2012 101 0 39 chr6 40996860 40997031 -148282523 - AluSg SINE Alu -16 294 139 2295 76 3 0 chr6 40997031 40997332 -148282222 - AluSp SINE Alu -11 302 1 2012 101 0 39 chr6 40997332 40997466 -148282088 - AluSg SINE Alu -171 139 1 1261 163 21 118 chr6 40997466 40997619 -148281935 - AluJo SINE Alu -192 110 2 2031 123 7 0 chr6 40997623 40997923 -148281631 - AluSx SINE Alu -10 302 1 1801 141 7 26 chr6 40997944 40998248 -148281306 - AluSx SINE Alu -14 298 1 1808 134 32 0 chr6 40998259 40998543 -148281011 - L1MC1 LINE L1 -13 6320 6028 214 175 25 0 chr6 40998793 40998833 -148280721 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 223 363 35 18 chr6 40998970 40999083 -148280471 - MIR SINE MIR -67 141 27 237 345 78 9 chr6 41000265 41000381 -148279173 - MIR3 SINE MIR -7 201 78 1975 104 3 54 chr6 41000936 41001252 -148278302 + AluSg SINE Alu 1 300 -10 254 313 127 12 chr6 41001887 41002053 -148277501 + L3b LINE CR1 1311 1495 -88 21 36 0 0 chr6 41002777 41002805 -148276749 + AT_rich Low_complexity Low_complexity 1 28 0 786 176 7 7 chr6 41002805 41002947 -148276607 - L1PB4 LINE L1 0 6156 6015 214 284 0 30 chr6 41003793 41003860 -148275694 + CT-rich Low_complexity Low_complexity 2 66 0 276 357 74 11 chr6 41005428 41005697 -148273857 - L2 LINE L2 -181 3091 2806 462 262 41 0 chr6 41007840 41007962 -148271592 - MIR SINE MIR -50 212 86 479 233 71 36 chr6 41008809 41009152 -148270402 - LTR16A1 LTR ERVL -1 456 22 207 194 42 28 chr6 41009435 41009507 -148270047 + CT-rich Low_complexity Low_complexity 5 77 0 207 234 47 0 chr6 41009707 41009771 -148269783 + G-rich Low_complexity Low_complexity 4 70 0 473 309 123 18 chr6 41011202 41011422 -148268132 + MIR SINE MIR 12 254 -8 2240 87 23 0 chr6 41012066 41012366 -148267188 + AluSg1 SINE Alu 1 307 -2 797 216 181 12 chr6 41012582 41012841 -148266713 - Cheshire DNA MER1_type -55 2365 2063 261 139 0 0 chr6 41012911 41012954 -148266600 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 41012957 41012978 -148266576 + AT_rich Low_complexity Low_complexity 1 21 0 1027 267 156 51 chr6 41013558 41014089 -148265465 - MLT1G1 LTR MaLR -8 587 1 454 217 47 36 chr6 41014775 41014964 -148264590 - MER34C LTR ERV1 0 542 368 2097 116 0 0 chr6 41014965 41015266 -148264288 + AluSx SINE Alu 1 301 -11 1447 182 4 0 chr6 41015280 41015522 -148264032 - Tigger2 DNA MER2_type -1 2717 2475 3087 141 71 18 chr6 41015576 41016059 -148263495 - Tigger2 DNA MER2_type -1955 763 244 1500 174 4 4 chr6 41016059 41016323 -148263231 - AluJb SINE Alu -15 297 34 3087 141 71 18 chr6 41016323 41016399 -148263155 - Tigger2 DNA MER2_type -2474 244 174 4907 109 52 29 chr6 41016400 41017216 -148262338 - MER4D LTR ERV1 0 903 1 1948 100 14 7 chr6 41017233 41017534 -148262020 - AluY SINE Alu 0 303 1 1583 159 0 0 chr6 41017553 41017810 -148261744 - AluJb SINE Alu -55 257 1 714 170 59 0 chr6 41017812 41017947 -148261607 - Tigger2 DNA MER2_type -2563 155 13 667 235 67 48 chr6 41018016 41018331 -148261223 - MER34C LTR ERV1 -228 357 37 981 168 37 0 chr6 41018465 41018637 -148260917 - AluSg/x SINE Alu -3 309 128 198 0 0 0 chr6 41018637 41018659 -148260895 + (TTA)n Simple_repeat Simple_repeat 2 23 0 981 168 37 0 chr6 41018659 41018677 -148260877 - AluSg/x SINE Alu -184 128 112 860 239 11 6 chr6 41019004 41019184 -148260370 - LTR39 LTR ERV1 0 783 603 4125 138 67 3 chr6 41019207 41019875 -148259679 - MER50 LTR ERV1 -11 723 13 3317 147 27 52 chr6 41019884 41019906 -148259648 - LTR39 LTR ERV1 -165 618 597 1763 181 0 0 chr6 41019906 41020209 -148259345 + AluJb SINE Alu 1 303 -9 3317 147 27 52 chr6 41020209 41020278 -148259276 - LTR39 LTR ERV1 -186 597 528 1970 100 14 17 chr6 41020278 41020569 -148258985 - AluY SINE Alu -21 290 1 3317 147 27 52 chr6 41020569 41020650 -148258904 - LTR39 LTR ERV1 -255 528 446 1112 194 163 4 chr6 41020650 41020908 -148258646 + AluJo SINE Alu 1 299 -3 3317 147 27 52 chr6 41020908 41021367 -148258187 - LTR39 LTR ERV1 -337 446 1 1976 86 32 18 chr6 41021981 41022260 -148257294 - AluSg SINE Alu -27 283 1 246 105 0 0 chr6 41022606 41022644 -148256910 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 671 207 126 6 chr6 41022951 41023125 -148256429 + MIR SINE MIR 16 210 -52 2214 113 9 14 chr6 41023129 41023475 -148256079 + MER47A DNA MER2_type 23 366 0 268 350 50 0 chr6 41023827 41023927 -148255627 + MIR SINE MIR 31 135 -73 262 246 18 0 chr6 41025629 41025686 -148253868 - L2 LINE L2 0 3313 3256 240 211 18 35 chr6 41026208 41026265 -148253289 - L2 LINE L2 -191 3081 3026 23 33 0 0 chr6 41026581 41026611 -148252943 + AT_rich Low_complexity Low_complexity 1 30 0 2098 113 17 0 chr6 41026742 41027043 -148252511 - AluSx SINE Alu -6 306 1 799 182 31 0 chr6 41027073 41027232 -148252322 - L1MB7 LINE L1 -16 6168 6005 213 294 29 0 chr6 41027428 41027496 -148252058 + CT-rich Low_complexity Low_complexity 3 72 0 213 148 204 0 chr6 41027520 41027574 -148251980 - L2 LINE L2 -3 3310 3246 384 333 60 0 chr6 41027681 41027831 -148251723 - MIR SINE MIR -72 190 32 484 287 64 35 chr6 41028102 41028304 -148251250 - MER63A DNA MER1_type -2 208 1 392 328 25 8 chr6 41028325 41028447 -148251107 - MIR SINE MIR -108 154 31 851 330 71 21 chr6 41029134 41029513 -148250041 + ERVL LTR ERVL 2122 2519 -3245 2133 112 7 0 chr6 41029552 41029848 -148249706 - AluSg SINE Alu -12 298 1 676 258 0 19 chr6 41030016 41030171 -148249383 + MER63 DNA MER1_type 674 825 -237 813 225 115 16 chr6 41031022 41031266 -148248288 + MER63 DNA MER1_type 793 1060 0 277 390 12 0 chr6 41031285 41031454 -148248100 + ERVL LTR ERVL 2737 2907 -2857 270 200 0 0 chr6 41031518 41031563 -148247991 + MER63 DNA MER1_type 763 807 -254 2386 318 42 57 chr6 41031766 41032387 -148247167 + ERVL LTR ERVL 2960 3589 -2065 1742 244 72 17 chr6 41032387 41032911 -148246643 - MLT1H1 LTR MaLR 0 555 3 2386 318 42 57 chr6 41032911 41033630 -148245924 + ERVL LTR ERVL 3589 4279 -1375 2824 231 82 43 chr6 41033730 41033768 -148245786 - MER21B LTR ERV1 -48 815 780 2250 69 0 3 chr6 41033768 41034094 -148245460 - AluY SINE Alu 0 325 1 2824 231 82 43 chr6 41034094 41034820 -148244734 - MER21B LTR ERV1 -83 780 19 473 228 0 22 chr6 41034842 41034934 -148244620 - MER21B LTR ERV1 -773 90 1 204 40 0 0 chr6 41035373 41035398 -148244156 + (CA)n Simple_repeat Simple_repeat 2 26 0 860 249 6 6 chr6 41035912 41036089 -148243465 - MER8 DNA MER2_type -62 177 1 291 328 47 31 chr6 41036090 41036218 -148243336 - L2 LINE L2 -12 3301 3172 303 359 82 27 chr6 41036269 41036598 -148242956 - L2 LINE L2 -337 2977 2631 1246 282 55 10 chr6 41036598 41036981 -148242573 + MLT1I LTR MaLR 3 402 -7 234 308 48 29 chr6 41037534 41037638 -148241916 + MIR SINE MIR 25 130 -78 2364 81 3 0 chr6 41037713 41038021 -148241533 + AluSx SINE Alu 1 309 -3 26 30 0 0 chr6 41038146 41038179 -148241375 + AT_rich Low_complexity Low_complexity 1 33 0 180 321 0 0 chr6 41039673 41039729 -148239825 - L2 LINE L2 -1 3312 3257 903 263 29 24 chr6 41040310 41040751 -148238803 - L1MD3 LINE L1 -1 8041 7610 194 100 0 0 chr6 41040995 41041025 -148238529 - L2 LINE L2 -217 3055 3026 682 309 92 0 chr6 41041887 41042104 -148237450 - MIR SINE MIR -6 256 20 477 267 96 41 chr6 41042379 41042525 -148237029 - MIR SINE MIR -80 182 29 445 228 189 0 chr6 41043005 41043132 -148236422 - L1ME2 LINE L1 -9 6155 6005 523 206 37 15 chr6 41043139 41043275 -148236279 - L1ME2 LINE L1 -213 5951 5813 1773 174 0 3 chr6 41043289 41043593 -148235961 + AluJo SINE Alu 3 305 -7 234 236 0 0 chr6 41043598 41043653 -148235901 - L1ME3 LINE L1 -8 6154 6100 677 68 0 78 chr6 41043660 41043763 -148235791 + AluJb SINE Alu 209 303 -9 839 243 80 21 chr6 41043788 41044027 -148235527 + L1ME2 LINE L1 5903 6155 -9 1688 157 64 0 chr6 41044036 41044316 -148235238 - AluJo SINE Alu -14 298 1 2018 199 79 49 chr6 41044323 41044514 -148235040 - L1ME3 LINE L1 -269 5895 5711 1625 129 8 8 chr6 41044514 41044770 -148234784 + AluJb SINE Alu 5 260 -52 759 78 0 0 chr6 41044776 41044879 -148234675 + (GAA)n Simple_repeat Simple_repeat 2 104 0 2018 199 79 49 chr6 41044879 41045289 -148234265 - L1ME3 LINE L1 -457 5707 5269 1588 251 52 12 chr6 41045304 41045802 -148233752 - L1MC4a LINE L1 -585 7223 6706 1650 151 0 4 chr6 41045803 41046062 -148233492 - Tigger2 DNA MER2_type 0 2718 2461 3612 133 111 32 chr6 41046128 41046314 -148233240 - Tigger2 DNA MER2_type -1975 743 573 1931 113 20 17 chr6 41046314 41046615 -148232939 + AluSx SINE Alu 3 304 -8 3612 133 111 32 chr6 41046615 41047115 -148232439 - Tigger2 DNA MER2_type -2145 573 3 352 276 66 44 chr6 41047115 41047451 -148232103 - L1MCc LINE L1 -4889 1534 1383 290 263 16 97 chr6 41048488 41048625 -148230929 - L1ME2 LINE L1 -381 5740 5664 1746 123 49 3 chr6 41048625 41048747 -148230807 + AluSx SINE Alu 1 116 -196 233 29 0 29 chr6 41048747 41048782 -148230772 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1746 123 49 3 chr6 41048782 41048943 -148230611 + AluSx SINE Alu 116 297 -15 290 263 16 97 chr6 41048943 41049011 -148230543 - L1ME2 LINE L1 -457 5664 5592 21 0 0 0 chr6 41049011 41049032 -148230522 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 21 chr6 41049063 41049111 -148230443 + (TATAA)n Simple_repeat Simple_repeat 5 51 0 3423 140 11 9 chr6 41049559 41050102 -148229452 + LTR10A LTR ERV1 1 544 -65 390 269 141 39 chr6 41050113 41050269 -148229285 - L1ME3A LINE L1 -274 5896 5725 4475 116 8 0 chr6 41050620 41051250 -148228304 - MER41B LTR ERV1 0 635 1 2311 192 24 2 chr6 41051286 41051703 -148227851 + MSTB LTR MaLR 1 426 0 2011 172 9 0 chr6 41052259 41052608 -148226946 + MER47A DNA MER2_type 15 366 0 253 345 86 83 chr6 41052745 41053119 -148226435 - L2 LINE L2 0 3272 2898 185 346 103 0 chr6 41053163 41053241 -148226313 - L2 LINE L2 -1021 2293 2208 6323 62 5 0 chr6 41054244 41055020 -148224534 - LTR17 LTR ERV1 0 780 1 5229 172 20 19 chr6 41055432 41056257 -148223297 - MER49 LTR ERV1 0 923 95 1891 152 0 0 chr6 41056257 41056559 -148222995 - AluSx SINE Alu -10 302 1 5229 172 20 19 chr6 41056559 41056646 -148222908 - MER49 LTR ERV1 -828 95 10 309 220 99 11 chr6 41056656 41056747 -148222807 - MARNA DNA Mariner -334 252 154 195 114 0 0 chr6 41058366 41058401 -148221153 + (TC)n Simple_repeat Simple_repeat 1 35 0 272 402 9 0 chr6 41060182 41060294 -148219260 - L3 LINE CR1 -477 1100 988 1099 235 35 53 chr6 41060411 41060730 -148218824 + MER93a LTR ERV1 90 402 0 410 306 35 21 chr6 41060885 41061029 -148218525 + MIR3 SINE MIR 31 176 -32 187 191 0 48 chr6 41060997 41061039 -148218515 + L3 LINE CR1 1518 1557 -20 * 839 206 180 0 chr6 41061398 41061592 -148217962 + MIR SINE MIR 7 235 -27 182 211 77 39 chr6 41061568 41061620 -148217934 + L2 LINE L2 3216 3269 -3 * 212 242 153 48 chr6 41061716 41061840 -148217714 - MIR SINE MIR -55 207 71 279 279 0 0 chr6 41063126 41063194 -148216360 + MIR SINE MIR 85 152 -110 535 256 63 19 chr6 41063249 41063456 -148216098 + L2 LINE L2 528 743 -2571 4420 261 139 26 chr6 41063473 41064410 -148215144 + L2 LINE L2 971 1800 -1514 1719 176 90 9 chr6 41064410 41064756 -148214798 + MLT1A2 LTR MaLR 1 374 0 4420 261 139 26 chr6 41064756 41065441 -148214113 + L2 LINE L2 1800 2777 -537 1058 197 19 5 chr6 41065468 41065676 -148213878 - MER20 DNA MER1_type -8 211 1 2867 130 2 14 chr6 41065689 41066113 -148213441 - L1P3 LINE L1 -6042 419 1 1326 135 4 58 chr6 41066110 41066370 -148213184 - L1MA5 LINE L1 -241 6059 5814 * 3289 254 109 20 chr6 41066361 41067626 -148211928 - L1M4c LINE L1 -3940 2444 1040 2708 19 0 0 chr6 41067626 41067937 -148211617 - AluYa5 SINE Alu 0 311 1 3289 254 109 20 chr6 41067937 41068085 -148211469 - L1M4c LINE L1 -5344 1040 906 4015 241 66 12 chr6 41068099 41069446 -148210108 + L1M4 LINE L1 2220 3639 -2507 2211 103 3 0 chr6 41070047 41070347 -148209207 + AluSp SINE Alu 1 301 -12 1409 228 20 0 chr6 41071338 41071680 -148207874 + L1MB5 LINE L1 5817 6165 -9 2092 167 27 3 chr6 41072808 41073173 -148206381 - MLT1B LTR MaLR -16 374 1 501 270 0 0 chr6 41073358 41073469 -148206085 + MER81 DNA DNA 3 113 -1 186 302 222 5 chr6 41073883 41074072 -148205482 - L2 LINE L2 -239 3074 2845 2302 126 113 13 chr6 41075570 41075959 -148203595 - MSTA LTR MaLR 0 428 1 221 318 47 28 chr6 41076063 41076170 -148203384 - MIR SINE MIR -10 252 144 324 266 11 11 chr6 41076300 41076394 -148203160 - L1M4 LINE L1 -1308 4838 4745 591 264 76 44 chr6 41076425 41076739 -148202815 + L1MCa LINE L1 1474 1990 -4617 1136 230 29 71 chr6 41076739 41077121 -148202433 - L1M4 LINE L1 -1996 4150 3785 1773 254 56 13 chr6 41077176 41077782 -148201772 + L1M4 LINE L1 4650 5281 -865 1631 180 3 22 chr6 41078302 41078619 -148200935 - AluJb SINE Alu -1 311 1 180 245 0 0 chr6 41078952 41079005 -148200549 + (CA)n Simple_repeat Simple_repeat 1 53 0 260 185 0 15 chr6 41079217 41079282 -148200272 + GA-rich Low_complexity Low_complexity 4 67 0 290 261 87 65 chr6 41080481 41080711 -148198843 + SN5 Other centromeric 1 235 -220 2216 84 6 28 chr6 41085602 41085922 -148193632 + AluSp SINE Alu 1 313 0 2359 170 49 0 chr6 41086031 41086437 -148193117 - MSTB LTR MaLR 0 426 1 620 343 72 29 chr6 41086539 41087466 -148192088 + L1PBb LINE L1 273 1373 -5836 2424 68 0 10 chr6 41087491 41087800 -148191754 + AluSp SINE Alu 1 306 -7 1309 267 54 23 chr6 41087900 41088703 -148190851 + L1PBb LINE L1 1361 2036 -5173 2694 205 15 42 chr6 41088776 41089018 -148190536 + L1PBb LINE L1 2127 2374 -4834 2431 63 0 0 chr6 41089018 41089321 -148190233 + AluY SINE Alu 1 303 -8 2694 205 15 42 chr6 41089321 41089825 -148189729 + L1PBb LINE L1 2374 2853 -4355 2505 70 0 13 chr6 41089825 41090139 -148189415 + AluY SINE Alu 1 310 -1 1372 166 8 11 chr6 41090140 41090405 -148189149 + LTR2B LTR ERV1 227 490 0 465 71 0 60 chr6 41090407 41090482 -148189072 + AluSp/q SINE Alu 235 306 -7 2387 110 0 0 chr6 41090482 41090792 -148188762 + AluSg SINE Alu 1 310 0 2232 113 10 3 chr6 41090839 41091150 -148188404 + AluSq SINE Alu 1 313 0 2189 136 3 0 chr6 41091370 41091678 -148187876 + AluSx SINE Alu 1 309 -3 2157 158 14 0 chr6 41091681 41092028 -148187526 - L1PB1 LINE L1 0 6151 5800 298 315 47 51 chr6 41092084 41092338 -148187216 + L1M4 LINE L1 4579 4831 -1315 2202 86 7 17 chr6 41092422 41092713 -148186841 + AluSp SINE Alu 1 288 -25 2370 53 0 3 chr6 41092713 41092998 -148186556 + AluY SINE Alu 1 284 -27 2269 74 40 0 chr6 41093017 41093316 -148186238 + AluY SINE Alu 1 311 0 1527 91 0 5 chr6 41093486 41093684 -148185870 - AluSg/x SINE Alu -32 278 82 1862 117 4 0 chr6 41094037 41094284 -148185270 - AluSp SINE Alu -2 311 64 1223 197 32 81 chr6 41094296 41094712 -148184842 + MSTB1 LTR MaLR 51 432 0 906 187 29 85 chr6 41094729 41094835 -148184719 + L1MC3 LINE L1 7488 7598 -187 2019 161 0 0 chr6 41094835 41095127 -148184427 + AluSx SINE Alu 1 292 -20 906 187 29 85 chr6 41095127 41095225 -148184329 + L1MC3 LINE L1 7598 7670 -115 2204 106 10 0 chr6 41095225 41095518 -148184036 + AluSx SINE Alu 1 296 -16 906 187 29 85 chr6 41095518 41095628 -148183926 + L1MC3 LINE L1 7670 7785 0 1977 196 82 14 chr6 41096099 41096600 -148182954 + L1MC3 LINE L1 7227 7761 -24 225 0 0 0 chr6 41096600 41096625 -148182929 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2278 95 3 0 chr6 41096625 41096909 -148182645 - AluSp SINE Alu -28 285 1 1048 220 116 67 chr6 41097824 41098115 -148181439 - MLT1E3 LTR MaLR -234 390 76 1907 152 42 121 chr6 41098115 41098569 -148180985 + MER47B DNA MER2_type 1 418 0 1048 220 116 67 chr6 41098569 41098649 -148180905 - MLT1E3 LTR MaLR -548 76 1 1574 266 93 78 chr6 41098703 41099501 -148180053 - HERVL40 LTR ERVL -4306 1224 415 2308 117 0 3 chr6 41099615 41099923 -148179631 + AluSx SINE Alu 1 307 -5 2534 84 3 0 chr6 41099984 41100294 -148179260 + AluSp SINE Alu 1 311 -2 1141 59 13 0 chr6 41100342 41100495 -148179059 + L1PA4 LINE L1 6001 6155 0 1899 87 111 35 chr6 41100519 41100807 -148178747 + AluSg SINE Alu 1 310 0 1738 190 0 7 chr6 41100858 41101153 -148178401 - AluJo SINE Alu -8 304 12 1300 133 6 0 chr6 41101236 41101417 -148178137 - AluSx SINE Alu -130 182 1 2501 90 0 0 chr6 41101469 41101779 -148177775 - AluSq SINE Alu -1 312 3 32 0 0 0 chr6 41102006 41102038 -148177516 + GC_rich Low_complexity Low_complexity 1 32 0 2159 75 21 0 chr6 41103265 41103575 -148175979 - AluSp SINE Alu 0 316 1 214 151 57 0 chr6 41103672 41103725 -148175829 + GA-rich Low_complexity Low_complexity 5 60 0 2315 186 43 50 chr6 41104085 41104137 -148175417 - Tigger7 DNA MER2_type 0 2587 2536 1672 130 24 4 chr6 41104137 41104383 -148175171 - AluSx SINE Alu -11 301 51 2315 186 43 50 chr6 41104383 41104970 -148174584 - Tigger7 DNA MER2_type -51 2536 1946 2139 122 0 14 chr6 41104970 41105265 -148174289 - AluSx SINE Alu -21 291 1 2315 186 43 50 chr6 41105265 41105356 -148174198 - Tigger7 DNA MER2_type -641 1946 2 189 0 0 0 chr6 41105385 41105406 -148174148 + (TG)n Simple_repeat Simple_repeat 2 22 0 257 342 120 13 chr6 41105406 41105553 -148174001 - MIR3 SINE MIR -10 198 32 185 229 229 17 chr6 41105617 41105735 -148173819 + MIR SINE MIR 86 228 -34 2557 78 0 0 chr6 41106611 41106920 -148172634 - AluSg SINE Alu -1 309 1 207 0 0 0 chr6 41107050 41107073 -148172481 + (CA)n Simple_repeat Simple_repeat 2 24 0 266 266 0 0 chr6 41107480 41107544 -148172010 - L2 LINE L2 -1 3271 3208 2392 93 0 7 chr6 41108003 41108305 -148171249 - AluSc SINE Alu -9 300 1 403 230 30 0 chr6 41108531 41108631 -148170923 - MER94 DNA DNA -19 115 13 2167 112 0 0 chr6 41108912 41109364 -148170190 - AluSq SINE Alu 0 452 1 2294 85 0 3 chr6 41110833 41111169 -148168385 - AluSg SINE Alu 0 335 1 193 314 29 14 chr6 41112055 41112125 -148167429 - L3b LINE CR1 -2 1581 1511 379 236 91 0 chr6 41112997 41113107 -148166447 + Charlie4a DNA MER1_type 17 136 -372 2109 110 0 0 chr6 41113108 41113381 -148166173 + AluSg SINE Alu 2 274 -36 1249 177 47 86 chr6 41113447 41113585 -148165969 + Charlie4a DNA MER1_type 133 275 -1686 2106 102 36 0 chr6 41113585 41113891 -148165663 + AluSq SINE Alu 1 316 0 1249 177 47 86 chr6 41113891 41113955 -148165599 + Charlie4a DNA MER1_type 275 340 -1621 2392 78 24 0 chr6 41113955 41114250 -148165304 + AluSq SINE Alu 1 302 -11 1249 177 47 86 chr6 41114250 41114429 -148165125 + Charlie4a DNA MER1_type 340 501 -7 285 297 76 17 chr6 41114663 41114781 -148164773 - L2 LINE L2 -3 3310 3186 191 270 139 29 chr6 41114951 41115088 -148164466 + MIR SINE MIR 110 261 -1 495 291 113 19 chr6 41115899 41116112 -148163442 - MIR SINE MIR -10 252 20 429 270 0 26 chr6 41116589 41116704 -148162850 + MIR SINE MIR 60 171 -91 212 270 16 32 chr6 41117029 41117092 -148162462 + L2 LINE L2 3169 3230 -42 482 207 0 9 chr6 41117320 41117436 -148162118 - Charlie4a DNA MER1_type -324 184 70 985 196 63 58 chr6 41117606 41117781 -148161773 + Charlie4a DNA MER1_type 24 197 -1764 2545 75 3 0 chr6 41117781 41118087 -148161467 + AluSp SINE Alu 1 307 -6 985 196 63 58 chr6 41118087 41118266 -148161288 + Charlie4a DNA MER1_type 197 436 -1525 1866 155 0 20 chr6 41118266 41118569 -148160985 + AluJb SINE Alu 1 297 -15 985 196 63 58 chr6 41118569 41118640 -148160914 + Charlie4a DNA MER1_type 436 505 -3 2226 129 3 0 chr6 41118672 41118981 -148160573 + AluSq SINE Alu 4 313 0 206 281 0 16 chr6 41119142 41119206 -148160348 - L3b LINE CR1 -217 1366 1304 495 275 55 11 chr6 41119521 41119703 -148159851 + L1MC5 LINE L1 7261 7450 -511 458 233 62 98 chr6 41119706 41119891 -148159663 + L1MC5 LINE L1 7546 7736 -225 2243 77 24 17 chr6 41119891 41120188 -148159366 - AluY SINE Alu -12 299 1 458 233 62 98 chr6 41120188 41120214 -148159340 + L1MC5 LINE L1 7736 7761 -200 1998 146 3 3 chr6 41120214 41120522 -148159032 + AluJb SINE Alu 2 309 -3 458 233 62 98 chr6 41120522 41120678 -148158876 + L1MC5 LINE L1 7761 7901 -60 2388 71 7 3 chr6 41120680 41120974 -148158580 - AluSp SINE Alu -17 296 2 2361 86 17 0 chr6 41121335 41121637 -148157917 - AluSp SINE Alu -6 307 1 2200 99 61 0 chr6 41122167 41122461 -148157093 + AluSx SINE Alu 1 312 0 225 0 0 0 chr6 41122585 41122610 -148156944 + (TG)n Simple_repeat Simple_repeat 1 25 0 2253 75 3 33 chr6 41122627 41122933 -148156621 - AluY SINE Alu -14 297 1 779 143 40 109 chr6 41122948 41123123 -148156431 - FRAM SINE Alu 0 166 4 337 335 36 22 chr6 41123154 41123432 -148156122 - L1MC4a LINE L1 -1917 5891 5610 2015 118 12 56 chr6 41124020 41124341 -148155213 - AluSq SINE Alu -6 307 1 491 253 43 12 chr6 41125034 41125196 -148154358 - MIR SINE MIR -7 255 89 1046 118 0 0 chr6 41125228 41125364 -148154190 + AluSq/x SINE Alu 1 136 -176 1959 88 6 91 chr6 41125364 41125682 -148153872 + AluSc SINE Alu 1 291 -18 189 0 0 0 chr6 41125895 41125916 -148153638 + (GGA)n Simple_repeat Simple_repeat 1 21 0 936 235 35 0 chr6 41126954 41127154 -148152400 - MER3 DNA MER1_type 0 209 3 216 0 0 0 chr6 41127892 41127916 -148151638 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 1257 77 0 0 chr6 41128162 41128332 -148151222 + (TTC)n Simple_repeat Simple_repeat 2 171 0 198 171 0 0 chr6 41128332 41128373 -148151181 + CT-rich Low_complexity Low_complexity 2 42 0 2512 46 30 0 chr6 41128505 41128807 -148150747 - AluY SINE Alu 0 311 1 231 319 56 0 chr6 41129511 41129583 -148149971 + L2 LINE L2 2686 2761 -553 1968 205 80 50 chr6 41129818 41129889 -148149665 - MLT1E3 LTR MaLR 0 624 557 1192 229 19 52 chr6 41129889 41130199 -148149355 - AluJo SINE Alu -2 300 1 1968 205 80 50 chr6 41130199 41130692 -148148862 - MLT1E3 LTR MaLR -67 557 43 198 71 0 0 chr6 41130745 41130773 -148148781 + (T)n Simple_repeat Simple_repeat 1 28 0 6529 74 26 57 chr6 41130774 41133115 -148146439 - SVA Other Other -520 1385 58 1220 0 0 53 chr6 41133115 41133305 -148146249 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6529 74 26 57 chr6 41133305 41133342 -148146212 - SVA Other Other -1847 58 21 23 0 0 0 chr6 41133480 41133503 -148146051 + AT_rich Low_complexity Low_complexity 1 23 0 1620 189 0 11 chr6 41133514 41133799 -148145755 + AluJb SINE Alu 9 290 -22 2034 208 80 15 chr6 41133875 41134403 -148145151 - MLT1F1 LTR MaLR 0 567 6 252 116 23 0 chr6 41135440 41135483 -148144071 + MADE1 DNA Mariner 35 78 -2 441 167 0 0 chr6 41135833 41135911 -148143643 - MLT1F LTR MaLR -2 540 463 545 332 80 8 chr6 41136023 41136397 -148143157 - LTR16B LTR ERVL -2 462 62 1406 331 42 49 chr6 41136405 41137624 -148141930 - ERVL LTR ERVL -504 5260 3688 687 296 42 0 chr6 41137622 41137929 -148141625 - ERVL LTR ERVL -2173 3481 3162 * 2884 318 59 23 chr6 41138018 41140049 -148139505 - ERVL LTR ERVL -1953 3043 873 26 30 0 0 chr6 41140924 41140957 -148138597 + AT_rich Low_complexity Low_complexity 1 33 0 916 234 109 13 chr6 41141770 41142112 -148137442 - LTR43 LTR ERV1 -53 470 177 1940 165 41 11 chr6 41143583 41143625 -148135929 - MLT2C1 LTR ERVL 0 397 358 393 22 0 0 chr6 41143625 41143671 -148135883 + (TG)n Simple_repeat Simple_repeat 2 47 0 1940 165 41 11 chr6 41143671 41143991 -148135563 - MLT2C1 LTR ERVL -39 358 24 234 212 106 59 chr6 41146964 41147049 -148132505 + L2 LINE L2 3183 3271 -1 552 68 0 0 chr6 41147137 41147210 -148132344 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 2024 90 0 50 chr6 41147316 41147594 -148131960 - AluSg SINE Alu -13 297 34 201 74 0 0 chr6 41148886 41148913 -148130641 + (TG)n Simple_repeat Simple_repeat 2 28 0 693 309 22 53 chr6 41149082 41149474 -148130080 + L1MC3 LINE L1 1445 1825 -4571 2464 76 3 13 chr6 41149474 41149790 -148129764 - AluSp SINE Alu 0 313 1 693 309 22 53 chr6 41149790 41149808 -148129746 + L1MC3 LINE L1 1825 1842 -4554 * 1037 220 63 16 chr6 41149805 41150169 -148129385 + L1MC3 LINE L1 2667 3047 -3168 1761 229 69 21 chr6 41150170 41150377 -148129177 + L1MC3 LINE L1 4799 4995 -1220 2038 120 4 0 chr6 41150377 41150652 -148128902 + AluSx SINE Alu 36 311 -1 1761 229 69 21 chr6 41150652 41151123 -148128431 + L1MC3 LINE L1 4995 5121 -1094 1634 184 57 0 chr6 41151123 41151235 -148128319 + AluJb SINE Alu 5 109 -203 252 0 0 0 chr6 41151235 41151263 -148128291 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1634 184 57 0 chr6 41151263 41151433 -148128121 + AluJb SINE Alu 109 303 -9 1761 229 69 21 chr6 41151433 41151803 -148127751 + L1MC3 LINE L1 5121 5472 -743 2070 132 0 23 chr6 41151808 41152111 -148127443 + AluSx SINE Alu 1 296 -16 522 143 9 76 chr6 41152134 41152239 -148127315 + AluJo/FLAM SINE Alu 35 132 -180 2351 100 3 0 chr6 41152241 41152541 -148127013 + AluSp SINE Alu 1 301 -12 813 265 70 18 chr6 41152561 41152833 -148126721 + L1ME1 LINE L1 5818 6103 -63 2136 95 67 0 chr6 41152833 41153117 -148126437 + AluSq SINE Alu 1 303 -10 2338 88 6 28 chr6 41153451 41153771 -148125783 + AluSp SINE Alu 1 313 0 2397 170 49 0 chr6 41153880 41154286 -148125268 - MSTB LTR MaLR 0 426 1 571 351 70 25 chr6 41154388 41155315 -148124239 + L1PBb LINE L1 273 1373 -5836 2582 65 0 10 chr6 41155340 41155648 -148123906 + AluSp SINE Alu 1 305 -8 1194 274 51 21 chr6 41155748 41156552 -148123002 + L1PBb LINE L1 1361 2036 -5173 2474 209 15 39 chr6 41156629 41156865 -148122689 + L1PBb LINE L1 2131 2371 -4837 2575 63 0 0 chr6 41156865 41157167 -148122387 + AluY SINE Alu 1 302 -9 2474 209 15 39 chr6 41157167 41157671 -148121883 + L1PBb LINE L1 2371 2853 -4355 2434 74 0 13 chr6 41157671 41157980 -148121574 + AluY SINE Alu 1 305 -6 1346 170 8 11 chr6 41157981 41158246 -148121308 + LTR2B LTR ERV1 227 490 0 528 63 0 0 chr6 41158248 41158347 -148121207 + AluSp/q SINE Alu 235 333 0 2402 107 0 0 chr6 41158351 41158661 -148120893 + AluSg SINE Alu 1 310 0 2217 116 10 3 chr6 41158707 41159018 -148120536 + AluSq SINE Alu 1 313 0 2248 129 3 0 chr6 41159237 41159547 -148120007 + AluSx SINE Alu 1 311 -1 2124 164 14 0 chr6 41159552 41159899 -148119655 - L1PB1 LINE L1 0 6151 5800 298 315 47 51 chr6 41159955 41160209 -148119345 + L1M4 LINE L1 4579 4831 -1315 820 85 0 0 chr6 41160293 41160399 -148119155 + AluSp SINE Alu 1 106 -207 718 228 13 20 chr6 41161496 41161666 -148117888 + FRAM SINE Alu 1 169 0 720 206 34 17 chr6 41161733 41161908 -148117646 - MER5B DNA MER1_type 0 178 1 248 246 0 0 chr6 41161993 41162050 -148117504 - L1MB7 LINE L1 -17 6167 6111 280 269 13 0 chr6 41162697 41162775 -148116779 - L1MB7 LINE L1 -58 6126 6048 813 59 0 0 chr6 41162782 41162883 -148116671 - HY3 scRNA scRNA 0 101 1 188 35 35 0 chr6 41164595 41164624 -148114930 + (TCTCC)n Simple_repeat Simple_repeat 2 31 0 2241 123 3 0 chr6 41165797 41166106 -148113448 - AluY SINE Alu -1 310 1 1757 200 33 14 chr6 41166106 41166235 -148113319 - L1M3 LINE L1 -568 5615 5490 297 0 0 0 chr6 41166235 41166268 -148113286 + (TG)n Simple_repeat Simple_repeat 2 34 0 1757 200 33 14 chr6 41166268 41166845 -148112709 - L1M3 LINE L1 -693 5490 4899 514 282 141 0 chr6 41171527 41171697 -148107857 + MIR SINE MIR 30 223 -39 795 296 132 20 chr6 41172911 41173550 -148106004 - HAL1 LINE L1 0 2507 1798 215 280 80 30 chr6 41173575 41173675 -148105879 - MER5A DNA MER1_type -63 126 22 1757 188 111 11 chr6 41173803 41174245 -148105309 - L1MB2 LINE L1 -1 6170 5685 613 231 57 73 chr6 41175878 41176246 -148103308 - L1MC5 LINE L1 -509 7452 7091 508 243 77 12 chr6 41176265 41176463 -148103091 + L1ME3A LINE L1 5586 5791 -379 600 264 45 27 chr6 41176537 41176757 -148102797 + L1ME3A LINE L1 5932 6155 -15 2288 221 31 23 chr6 41177206 41177859 -148101695 + L1M4c LINE L1 997 1654 -4730 355 304 9 36 chr6 41177865 41177977 -148101577 - L1MC4 LINE L1 -1339 6703 6595 240 86 0 0 chr6 41178037 41178072 -148101482 + (TG)n Simple_repeat Simple_repeat 1 35 0 1827 197 23 32 chr6 41178177 41178613 -148100941 + L1MB5 LINE L1 5743 6174 0 26 50 0 0 chr6 41179354 41179394 -148100160 + AT_rich Low_complexity Low_complexity 1 40 0 995 161 0 0 chr6 41179626 41179769 -148099785 - FAM SINE Alu -29 156 14 2050 158 0 3 chr6 41180038 41180348 -148099206 - AluSx SINE Alu -3 309 1 301 308 34 26 chr6 41180363 41180480 -148099074 - L1ME4a LINE L1 -165 5956 5839 2043 114 3 10 chr6 41180507 41180797 -148098757 + AluSx SINE Alu 1 288 -24 1706 193 0 13 chr6 41180985 41181285 -148098269 + AluJb SINE Alu 1 296 -16 268 297 126 0 chr6 41181379 41181490 -148098064 - L2 LINE L2 0 3313 3189 2283 177 102 14 chr6 41181498 41181972 -148097582 + MLT2B3 LTR ERVL 1 523 -31 563 27 0 14 chr6 41181972 41182046 -148097508 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 2283 177 102 14 chr6 41182046 41182073 -148097481 + MLT2B3 LTR ERVL 523 546 -8 496 284 106 41 chr6 41182073 41182650 -148096904 - L2 LINE L2 -135 3178 2564 1610 212 27 34 chr6 41182650 41182692 -148096862 - L1M4 LINE L1 -721 5457 5416 3323 181 41 1 chr6 41182692 41183349 -148096205 - L1MB3 LINE L1 -8 6175 5493 1610 212 27 34 chr6 41183349 41183872 -148095682 - L1M4 LINE L1 -762 5416 4903 26 50 0 0 chr6 41184011 41184051 -148095503 + AT_rich Low_complexity Low_complexity 1 40 0 814 203 28 46 chr6 41185051 41185268 -148094286 - MER20 DNA MER1_type 0 219 7 595 318 99 32 chr6 41185687 41186090 -148093464 + L1MC5 LINE L1 7354 7783 -178 216 0 0 0 chr6 41186678 41186702 -148092852 + (CA)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 41186739 41186780 -148092774 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr6 41190085 41190109 -148089445 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 1284 75 0 0 chr6 41190355 41190528 -148089026 + (TTC)n Simple_repeat Simple_repeat 2 174 0 198 171 0 0 chr6 41190528 41190569 -148088985 + CT-rich Low_complexity Low_complexity 2 42 0 598 25 0 0 chr6 41190701 41190780 -148088774 - AluY SINE Alu 0 309 231 1445 263 8 48 chr6 41290800 41291336 -147988218 + L1M4 LINE L1 2613 3126 -3020 3173 65 2 62 chr6 41291349 41291829 -147987725 + L1PA8 LINE L1 5721 6171 -1 336 193 60 0 chr6 41291853 41291936 -147987618 + L1M4 LINE L1 3107 3194 -2952 1152 281 18 0 chr6 41291953 41292227 -147987327 - Zaphod DNA AcHobo -3670 361 83 600 236 25 127 chr6 41292392 41292706 -147986848 - LTR41 LTR ERVL -211 562 281 364 233 83 0 chr6 41292714 41292834 -147986720 + L1MCa LINE L1 1331 1460 -4966 290 193 145 14 chr6 41292995 41293140 -147986414 + L1M4 LINE L1 5236 5399 -747 522 245 78 44 chr6 41293510 41293714 -147985840 - L2 LINE L2 0 3313 3103 3323 106 43 9 chr6 41294729 41295268 -147984286 - L1MA1 LINE L1 -3 6299 5743 3584 138 7 3 chr6 41295269 41296268 -147983286 - L1MA1 LINE L1 -628 5674 4673 303 286 31 0 chr6 41296563 41296661 -147982893 - L1MC3 LINE L1 0 7785 7685 6066 61 26 79 chr6 41296681 41298865 -147980689 - SVA Other Other -518 1386 1 2435 106 20 57 chr6 41299030 41299484 -147980070 + MLT2A2 LTR ERVL 17 453 0 384 177 0 140 chr6 41299526 41299690 -147979864 + LTR41 LTR ERVL 632 772 -1 468 324 100 7 chr6 41299691 41299972 -147979582 + HAL1 LINE L1 1593 1899 -608 2385 25 7 14 chr6 41300378 41300693 -147978861 + AluY SINE Alu 1 313 0 207 321 0 0 chr6 41301058 41301111 -147978443 - L2 LINE L2 -703 2611 2559 279 278 0 21 chr6 41301812 41301909 -147977645 - HAL1 LINE L1 -968 1539 1445 505 225 107 45 chr6 41302391 41302635 -147976919 - L1M4b LINE L1 -5395 1464 1206 254 326 51 11 chr6 41302698 41302876 -147976678 - L1M4b LINE L1 -5667 1188 1004 231 218 26 122 chr6 41302930 41303086 -147976468 - L1M4b LINE L1 -5688 1171 1031 210 143 0 0 chr6 41303109 41303144 -147976410 + (TG)n Simple_repeat Simple_repeat 1 35 0 483 272 24 21 chr6 41303219 41303433 -147976121 - L1M4b LINE L1 -6341 514 91 904 197 168 17 chr6 41303520 41303885 -147975669 - L1MEc LINE L1 -3683 2532 2154 284 139 0 0 chr6 41303970 41304033 -147975521 - Alu SINE Alu 0 300 238 343 363 57 37 chr6 41304100 41304450 -147975104 - L1MEc LINE L1 -5670 535 179 383 265 138 33 chr6 41304495 41304676 -147974878 + L1MC4a LINE L1 6596 6795 -1013 2381 42 3 23 chr6 41304704 41305012 -147974542 + AluY SINE Alu 1 302 -9 396 322 45 20 chr6 41305077 41305279 -147974275 + L1M4 LINE L1 2258 2464 -3682 183 295 221 25 chr6 41305380 41305502 -147974052 + MIR3 SINE MIR 59 204 -4 7037 92 5 25 chr6 41305891 41306970 -147972584 + MER11C LTR ERVK 1 1057 -14 23 0 0 0 chr6 41307010 41307033 -147972521 + AT_rich Low_complexity Low_complexity 1 23 0 2050 140 0 19 chr6 41307158 41307465 -147972089 + AluSx SINE Alu 1 301 -11 341 151 0 24 chr6 41307816 41307887 -147971667 - Alu SINE Alu -250 51 1 192 289 0 0 chr6 41308288 41308333 -147971221 - L3 LINE CR1 -418 1159 1115 21 57 0 0 chr6 41308875 41308910 -147970644 + AT_rich Low_complexity Low_complexity 1 35 0 636 202 85 124 chr6 41308969 41309227 -147970327 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 41310490 41310518 -147969036 + AT_rich Low_complexity Low_complexity 1 28 0 2172 96 55 0 chr6 41311253 41311546 -147968008 - AluSc SINE Alu 0 309 1 493 188 20 0 chr6 41311940 41312041 -147967513 - MLT1A1 LTR MaLR -262 103 1 1079 142 0 41 chr6 41312041 41312259 -147967295 - L1 LINE L1 -786 5360 5152 1437 174 0 0 chr6 41312262 41312526 -147967028 + L1MB1 LINE L1 5867 6130 -59 353 205 0 0 chr6 41312512 41312595 -147966959 - L1 LINE L1 -3386 2760 2678 * 855 167 0 10 chr6 41312593 41312791 -147966763 + L1 LINE L1 4225 4420 -1726 * 3639 159 14 25 chr6 41312775 41312905 -147966649 + L1 LINE L1 4643 4773 -1373 2083 121 0 0 chr6 41312905 41313209 -147966345 + AluSg1 SINE Alu 1 304 0 3639 159 14 25 chr6 41313209 41313843 -147965711 + L1 LINE L1 4773 5400 -746 1615 128 0 0 chr6 41313848 41314067 -147965487 + AluSc SINE Alu 5 223 -86 393 329 62 36 chr6 41314439 41314746 -147964808 - L1M4 LINE L1 -1760 4386 4072 422 358 73 22 chr6 41316302 41316615 -147962939 + L2 LINE L2 2846 3174 -139 345 47 0 0 chr6 41317055 41317098 -147962456 + (CA)n Simple_repeat Simple_repeat 2 44 0 2446 115 22 6 chr6 41317568 41317924 -147961630 + THE1B LTR MaLR 3 364 0 1343 127 32 0 chr6 41317979 41318200 -147961354 + MSTB1 LTR MaLR 152 379 -53 1202 139 87 16 chr6 41319012 41319264 -147960290 + LTR1 LTR ERV1 1 270 -515 1097 125 40 0 chr6 41319240 41319416 -147960138 + LTR1 LTR ERV1 603 785 0 * 27 49 0 0 chr6 41319548 41319589 -147959965 + AT_rich Low_complexity Low_complexity 1 41 0 2216 113 0 0 chr6 41319589 41319873 -147959681 + AluSx SINE Alu 1 284 -28 243 146 0 0 chr6 41319873 41319914 -147959640 + (TA)n Simple_repeat Simple_repeat 2 42 0 375 260 13 87 chr6 41319923 41320073 -147959481 - L2 LINE L2 -32 3281 3143 9946 84 9 0 chr6 41320906 41322270 -147957284 + HERVFH19I LTR ERV1 6344 7719 0 3418 75 34 0 chr6 41322270 41322740 -147956814 + LTR19A LTR ERV1 1 486 0 241 237 62 31 chr6 41322991 41323088 -147956466 + MIR SINE MIR 153 252 -10 342 97 56 14 chr6 41323238 41323310 -147956244 + CT-rich Low_complexity Low_complexity 3 77 0 3420 167 41 11 chr6 41323311 41323736 -147955818 - L1MB3 LINE L1 0 6183 5727 243 0 0 0 chr6 41323736 41323763 -147955791 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3420 167 41 11 chr6 41323763 41324048 -147955506 - L1MB3 LINE L1 -456 5727 5452 407 294 78 52 chr6 41324052 41324283 -147955271 + L1ME3A LINE L1 5829 6065 -105 4280 131 39 93 chr6 41325230 41326240 -147953314 - Tigger3b DNA MER2_type -276 955 1 234 310 76 32 chr6 41326285 41326443 -147953111 - L1ME LINE L1 -5507 1036 872 281 298 44 32 chr6 41326467 41326729 -147952825 - L1ME LINE L1 -5590 940 665 441 360 44 44 chr6 41326982 41327257 -147952297 - L1ME LINE L1 -6232 308 34 402 303 45 31 chr6 41327283 41327860 -147951694 - L1MEc LINE L1 -4760 1636 1052 2059 118 16 10 chr6 41328618 41328923 -147950631 + AluSc SINE Alu 1 307 -2 260 0 57 0 chr6 41328926 41328961 -147950593 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 3614 86 34 11 chr6 41328962 41329519 -147950035 - LTR19B LTR ERV1 -10 570 1 186 43 0 0 chr6 41329820 41329843 -147949711 + (GGGAGA)n Simple_repeat Simple_repeat 4 26 0 252 77 0 0 chr6 41329942 41329981 -147949573 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 139 0 0 chr6 41330039 41330075 -147949479 - MLT1K LTR MaLR -411 177 142 3277 141 64 31 chr6 41331896 41332051 -147947503 - L1MA7 LINE L1 -2 6289 6141 1314 210 52 6 chr6 41332051 41332380 -147947174 - MER2 DNA MER2_type 0 344 1 3277 141 64 31 chr6 41332380 41332461 -147947093 - L1MA7 LINE L1 -150 6141 6064 1699 167 32 0 chr6 41332461 41332743 -147946811 - AluJb SINE Alu -21 291 1 3277 141 64 31 chr6 41332743 41333179 -147946375 - L1MA7 LINE L1 -227 6064 5594 2039 115 0 0 chr6 41333219 41333488 -147946066 + AluSg SINE Alu 5 273 -37 838 271 30 27 chr6 41333599 41333898 -147945656 + LTR16A LTR ERVL 22 321 -129 307 259 41 95 chr6 41334007 41334154 -147945400 - HAL1b LINE L1 -462 886 748 214 290 48 16 chr6 41334830 41334892 -147944662 + L2 LINE L2 3134 3197 -75 417 226 78 39 chr6 41335301 41335505 -147944049 - L1MC5 LINE L1 -109 7852 7641 337 39 19 19 chr6 41335581 41335633 -147943921 + (TTCTC)n Simple_repeat Simple_repeat 5 56 0 271 224 53 0 chr6 41335649 41335725 -147943829 - L1MC5 LINE L1 -498 7463 7384 216 0 0 0 chr6 41335912 41335936 -147943618 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1240 176 52 29 chr6 41335939 41336211 -147943343 - AluJo SINE Alu -30 282 5 219 146 0 0 chr6 41336606 41336647 -147942907 + (CA)n Simple_repeat Simple_repeat 2 42 0 2572 13 0 0 chr6 41336837 41337152 -147942402 - L1PA4 LINE L1 -1559 4587 4273 7511 30 1 0 chr6 41337152 41338706 -147940848 + L1PA4 LINE L1 4596 6150 -5 1886 137 16 6 chr6 41338706 41338770 -147940784 - L1MC1 LINE L1 -5 6328 6266 1808 149 41 56 chr6 41338770 41339112 -147940442 + MER1B DNA MER1_type 1 337 0 1886 137 16 6 chr6 41339112 41339357 -147940197 - L1MC1 LINE L1 -67 6266 6013 27 0 0 0 chr6 41339762 41339789 -147939765 + AT_rich Low_complexity Low_complexity 1 27 0 290 300 123 15 chr6 41339815 41339945 -147939609 - MIR SINE MIR -27 235 92 487 83 0 0 chr6 41341926 41341998 -147937556 + MER51A LTR ERV1 489 560 -74 248 316 53 45 chr6 41343230 41343363 -147936191 + L2 LINE L2 3089 3222 -50 185 309 182 9 chr6 41344731 41344841 -147934713 + L2 LINE L2 3138 3266 -6 416 189 67 0 chr6 41344933 41345023 -147934531 + ORSL DNA AcHobo 1 96 -179 25148 164 13 27 chr6 41345126 41349341 -147930213 + L1PA10 LINE L1 315 4589 -1894 8148 61 7 0 chr6 41349341 41350303 -147929251 - LTR5 LTR ERVK 0 969 1 25148 164 13 27 chr6 41350303 41351633 -147927921 + L1PA10 LINE L1 4589 5937 -546 2935 82 3 0 chr6 41351633 41351987 -147927567 - THE1A LTR MaLR 0 355 1 12362 93 4 22 chr6 41351987 41352319 -147927235 - THE1A-int LTR MaLR 0 1580 1244 2290 110 0 3 chr6 41352319 41352628 -147926926 - AluY SINE Alu -3 308 1 12362 93 4 22 chr6 41352628 41353904 -147925650 - THE1A-int LTR MaLR -336 1244 1 2826 93 6 0 chr6 41353904 41354257 -147925297 - THE1A LTR MaLR 0 355 1 25148 164 13 27 chr6 41354257 41354759 -147924795 + L1PA10 LINE L1 5935 6461 -22 204 40 0 0 chr6 41354759 41354784 -147924770 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 25148 164 13 27 chr6 41354784 41354798 -147924756 + L1PA10 LINE L1 6461 6474 -9 3135 147 12 10 chr6 41354802 41354914 -147924640 - L1MA7 LINE L1 -350 5941 5831 1299 174 43 135 chr6 41354914 41355426 -147924128 + MER4C LTR ERV1 1 465 0 3135 147 12 10 chr6 41355426 41355824 -147923730 - L1MA7 LINE L1 -460 5831 5430 184 143 0 0 chr6 41358093 41358121 -147921433 - MIR SINE MIR -34 228 201 2166 246 76 4 chr6 41358228 41358768 -147920786 + Zaphod DNA AcHobo 83 661 -3370 308 209 137 71 chr6 41360730 41360912 -147918642 - L1M2 LINE L1 -5889 960 767 266 304 108 0 chr6 41361770 41361872 -147917682 + L2 LINE L2 3201 3313 0 2566 55 0 3 chr6 41362096 41362408 -147917146 - AluY SINE Alu 0 311 1 304 208 13 0 chr6 41366554 41366631 -147912923 - MER116 DNA Mariner -1 79 2 1615 192 10 3 chr6 41366911 41367202 -147912352 - AluJb SINE Alu -17 295 3 622 332 70 47 chr6 41367427 41367962 -147911592 - L2 LINE L2 -1 3312 2768 243 0 0 0 chr6 41367962 41367989 -147911565 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8172 21 0 2 chr6 41368009 41369267 -147910287 - L1PA3 LINE L1 0 6155 4910 9000 27 1 0 chr6 41369267 41370314 -147909240 + L1PA3 LINE L1 3855 4902 -1244 2147 126 0 10 chr6 41370314 41370616 -147908938 - AluSq SINE Alu -14 299 1 699 307 161 41 chr6 41370616 41370682 -147908872 - L2 LINE L2 -536 2778 2721 2223 110 0 0 chr6 41370682 41370973 -147908581 - AluY SINE Alu -20 291 1 699 307 161 41 chr6 41370973 41371802 -147907752 - L2 LINE L2 -593 2721 1776 363 183 15 5 chr6 41372963 41373085 -147906469 - MER53 DNA DNA 0 189 1 871 174 56 28 chr6 41373859 41374037 -147905517 + MER20 DNA MER1_type 30 212 -7 2012 117 24 3 chr6 41374080 41374378 -147905176 - AluSx SINE Alu -8 304 1 342 298 102 39 chr6 41374411 41374773 -147904781 - Tigger4(Zombi) DNA MER2_type -1943 788 404 235 245 0 0 chr6 41374825 41374874 -147904680 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 287 341 55 76 chr6 41375043 41375398 -147904156 + L2 LINE L2 2715 3062 -251 351 0 0 0 chr6 41376354 41376393 -147903161 + (TG)n Simple_repeat Simple_repeat 1 39 0 333 100 0 0 chr6 41376393 41376443 -147903111 + (GA)n Simple_repeat Simple_repeat 2 51 0 550 278 63 21 chr6 41378100 41378291 -147901263 - MIR SINE MIR -56 206 8 299 288 83 15 chr6 41379234 41379366 -147900188 + MIR SINE MIR 54 194 -68 2465 70 3 0 chr6 41380193 41380491 -147899063 + AluSg SINE Alu 1 299 -11 360 133 0 0 chr6 41380492 41380552 -147899002 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 637 158 17 0 chr6 41381277 41381397 -147898157 + L1MA8 LINE L1 6166 6287 -4 482 308 93 24 chr6 41382124 41382413 -147897141 - MLT1L LTR MaLR -76 539 231 248 221 26 0 chr6 41382422 41382499 -147897055 - L1MC4 LINE L1 -1354 6688 6610 1828 166 3 0 chr6 41382909 41383204 -147896350 - AluSg SINE Alu -14 296 1 1238 245 24 3 chr6 41383264 41383562 -147895992 + L1MB8 LINE L1 5520 5823 -343 412 224 0 0 chr6 41383567 41383643 -147895911 + U1 snRNA snRNA 3 78 -87 630 248 0 0 chr6 41383643 41383780 -147895774 + L1PB4 LINE L1 6020 6156 0 1106 275 42 6 chr6 41383792 41384148 -147895406 + L1MB8 LINE L1 5808 6176 -2 378 339 104 43 chr6 41384339 41384698 -147894856 + L1MC/D LINE L1 5285 5666 -516 2327 96 0 16 chr6 41384698 41385010 -147894544 + AluSg SINE Alu 1 307 -3 378 339 104 43 chr6 41385010 41385074 -147894480 + L1MC/D LINE L1 5666 5725 -457 8971 87 10 23 chr6 41385179 41385514 -147894040 - HERV9 LTR ERV1 -1602 6797 6459 11286 46 13 9 chr6 41385514 41386892 -147892662 + SVA Other Other 2 1385 -1 8971 87 10 23 chr6 41386892 41387811 -147891743 - HERV9 LTR ERV1 -1940 6459 5560 1734 95 13 0 chr6 41387811 41388043 -147891511 + AluSp SINE Alu 74 308 -5 317 257 83 7 chr6 41388054 41388198 -147891356 + L1M4 LINE L1 3196 3350 -2796 3699 243 137 37 chr6 41388262 41388982 -147890572 + L1MD2 LINE L1 3196 3843 -2516 216 0 0 0 chr6 41388982 41389006 -147890548 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3699 243 137 37 chr6 41389006 41389763 -147889791 + L1MD2 LINE L1 3843 4523 -1836 200 57 0 29 chr6 41389763 41389798 -147889756 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3699 243 137 37 chr6 41389798 41389989 -147889565 + L1MD2 LINE L1 4523 4694 -1665 209 33 33 0 chr6 41389989 41390019 -147889535 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3699 243 137 37 chr6 41390019 41391189 -147888365 + L1MD2 LINE L1 4694 6357 -2 4466 173 33 14 chr6 41391202 41391783 -147887771 + L1MC2 LINE L1 5465 6068 -276 2032 202 61 25 chr6 41391783 41392228 -147887326 - LOR1b LTR ERV1 0 461 1 4466 173 33 14 chr6 41392228 41392485 -147887069 + L1MC2 LINE L1 6068 6319 -25 21 0 0 0 chr6 41392572 41392593 -147886961 + AT_rich Low_complexity Low_complexity 1 21 0 1749 109 79 19 chr6 41392781 41393046 -147886508 - MER51A LTR ERV1 -353 281 1 2826 170 19 0 chr6 41393046 41393533 -147886021 + L1MC2 LINE L1 5567 6062 -282 265 143 0 0 chr6 41393537 41393572 -147885982 - LOR1a LTR ERV1 -2 495 461 2119 193 33 38 chr6 41393572 41393959 -147885595 - LOR1b LTR ERV1 -10 451 65 2198 87 0 7 chr6 41393959 41394240 -147885314 + AluY SINE Alu 1 305 -6 217 0 0 0 chr6 41394240 41394264 -147885290 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2119 193 33 38 chr6 41394271 41394335 -147885219 - LOR1b LTR ERV1 -396 65 2 1260 178 34 34 chr6 41394335 41394604 -147884950 + L1MC2 LINE L1 6060 6328 -16 8842 158 18 62 chr6 41395105 41397046 -147882508 - L1MEc LINE L1 -1512 4703 2849 551 141 0 0 chr6 41397046 41397124 -147882430 + FLAM_C SINE Alu 33 110 -33 318 270 68 27 chr6 41397476 41397624 -147881930 - L1ME4a LINE L1 -201 5920 5767 2238 92 10 0 chr6 41397631 41397923 -147881631 + AluSq SINE Alu 1 295 -18 1853 28 0 9 chr6 41398192 41398404 -147881150 + L1PA5 LINE L1 5936 6145 -9 25 31 0 0 chr6 41398404 41398436 -147881118 + AT_rich Low_complexity Low_complexity 1 32 0 325 239 141 21 chr6 41398517 41398659 -147880895 - L1MC4 LINE L1 -126 7916 7758 2825 10 0 0 chr6 41399219 41399523 -147880031 + AluYa5 SINE Alu 2 305 -6 670 299 53 28 chr6 41400158 41400498 -147879056 + L1MEc LINE L1 2191 2514 -3701 1842 176 7 0 chr6 41400498 41400804 -147878750 + AluJb SINE Alu 1 308 -4 670 299 53 28 chr6 41400804 41401012 -147878542 + L1MEc LINE L1 2514 2715 -3500 31 20 0 20 chr6 41401085 41401114 -147878440 + AT_rich Low_complexity Low_complexity 1 30 -18 2074 121 7 7 chr6 41401114 41401404 -147878150 - AluSx SINE Alu -22 290 1 31 20 0 20 chr6 41401404 41401423 -147878131 + AT_rich Low_complexity Low_complexity 30 48 0 212 0 36 0 chr6 41401429 41401457 -147878097 + (TAATG)n Simple_repeat Simple_repeat 2 30 0 262 324 39 10 chr6 41401539 41401746 -147877808 - L1MEc LINE L1 -3500 2715 2503 913 204 88 25 chr6 41401746 41401986 -147877568 + MLT1E3 LTR MaLR 370 624 0 22 0 0 0 chr6 41402195 41402217 -147877337 + AT_rich Low_complexity Low_complexity 1 22 0 1961 164 18 12 chr6 41402958 41403294 -147876260 + MER44D DNA MER2_type 1 608 -1 261 0 0 0 chr6 41403849 41403878 -147875676 + (T)n Simple_repeat Simple_repeat 1 29 0 360 300 31 31 chr6 41404557 41404717 -147874837 - MLT1J2 LTR MaLR 0 450 291 374 211 13 0 chr6 41405089 41405165 -147874389 + MER54A LTR ERVL 2 78 -823 892 245 41 28 chr6 41405175 41405465 -147874089 + HERVL LTR ERVL 4149 4442 -1212 1068 179 118 94 chr6 41405611 41405941 -147873613 - MLT1A1 LTR MaLR 0 365 28 2044 189 21 8 chr6 41405950 41406313 -147873241 - MER54A LTR ERVL -539 362 4 311 336 15 7 chr6 41406409 41406546 -147873008 - HERVL LTR ERVL -2163 3491 3354 1551 210 9 59 chr6 41406723 41407047 -147872507 + MER70B LTR ERVL 271 578 0 621 259 45 26 chr6 41407049 41407332 -147872222 + L1MCa LINE L1 932 1223 -5203 1691 173 0 0 chr6 41407332 41407592 -147871962 + AluJb SINE Alu 27 286 -26 621 259 45 26 chr6 41407592 41407617 -147871937 + L1MCa LINE L1 1223 1246 -5180 266 240 42 52 chr6 41407639 41407735 -147871819 - L1MEc LINE L1 -5166 1230 1136 682 213 18 30 chr6 41407796 41407965 -147871589 - L1MD2 LINE L1 -10 6349 6183 * 1598 208 11 3 chr6 41407923 41408270 -147871284 + L1 LINE L1 4817 5166 -980 1872 136 0 4 chr6 41408270 41408542 -147871012 + L1PB3 LINE L1 5882 6152 -2 34 0 0 0 chr6 41408542 41408576 -147870978 + AT_rich Low_complexity Low_complexity 1 34 0 408 287 52 29 chr6 41408577 41408751 -147870803 - MIR SINE MIR -27 235 56 269 196 0 0 chr6 41408729 41408775 -147870779 - L2 LINE L2 -661 2653 2608 * 300 265 2 97 chr6 41408952 41409092 -147870462 + L1 LINE L1 5132 5255 -891 639 212 0 61 chr6 41409092 41409224 -147870330 + FLAM_A SINE Alu 3 126 -7 300 265 2 97 chr6 41409224 41409271 -147870283 + L1 LINE L1 5255 5305 -841 25320 173 13 37 chr6 41409271 41409464 -147870090 + L1PA10 LINE L1 4 200 -6283 8393 53 1 0 chr6 41409464 41410429 -147869125 - LTR5 LTR ERVK -3 966 1 25320 173 13 37 chr6 41410429 41414770 -147864784 + L1PA10 LINE L1 200 4643 -1840 8115 62 7 0 chr6 41414770 41415732 -147863822 - LTR5 LTR ERVK 0 969 1 25320 173 13 37 chr6 41415732 41417062 -147862492 + L1PA10 LINE L1 4643 6003 -480 2958 79 3 0 chr6 41417062 41417416 -147862138 - THE1A LTR MaLR 0 355 1 12428 91 4 22 chr6 41417416 41417748 -147861806 - THE1A-int LTR MaLR 0 1580 1244 2304 107 0 3 chr6 41417748 41418057 -147861497 - AluY SINE Alu -3 308 1 12428 91 4 22 chr6 41418057 41419333 -147860221 - THE1A-int LTR MaLR -336 1244 1 2798 99 6 0 chr6 41419333 41419686 -147859868 - THE1A LTR MaLR 0 355 1 25320 173 13 37 chr6 41419686 41420188 -147859366 + L1PA10 LINE L1 6001 6461 -22 249 33 0 0 chr6 41420188 41420218 -147859336 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 25320 173 13 37 chr6 41420218 41420232 -147859322 + L1PA10 LINE L1 6461 6474 -9 3135 147 12 10 chr6 41420236 41420348 -147859206 - L1MA7 LINE L1 -350 5941 5831 1305 175 41 134 chr6 41420348 41420861 -147858693 + MER4C LTR ERV1 1 465 0 3135 147 12 10 chr6 41420861 41421259 -147858295 - L1MA7 LINE L1 -460 5831 5430 206 231 0 0 chr6 41423453 41423492 -147856062 + GA-rich Low_complexity Low_complexity 2 40 0 8337 65 12 5 chr6 41423535 41424535 -147855019 - LTR13 LTR ERVK 0 1007 1 2056 245 82 4 chr6 41424678 41425201 -147854353 + Zaphod DNA AcHobo 98 661 -3370 310 258 147 68 chr6 41427161 41427351 -147852203 - L1M2 LINE L1 -5889 960 756 271 314 108 0 chr6 41428226 41428328 -147851226 + L2 LINE L2 3201 3313 0 186 333 48 0 chr6 41429941 41430025 -147849529 + L2 LINE L2 3167 3254 -59 473 143 0 22 chr6 41432742 41432833 -147846721 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 1919 162 0 13 chr6 41432833 41433147 -147846407 - AluJo SINE Alu -2 310 1 22 0 0 0 chr6 41433665 41433687 -147845867 + AT_rich Low_complexity Low_complexity 1 22 0 2204 129 0 0 chr6 41434414 41434724 -147844830 - AluSg SINE Alu 0 310 1 2051 219 25 25 chr6 41435605 41436075 -147843479 + MER90 LTR ERV1 4 473 -141 1204 227 42 57 chr6 41436080 41436463 -147843091 + MLT2C1 LTR ERVL 3 379 -18 562 234 23 0 chr6 41436463 41436591 -147842963 + MER90 LTR ERV1 482 612 -2 346 292 10 0 chr6 41436680 41436776 -147842778 - MIR SINE MIR -108 154 58 590 65 26 0 chr6 41437290 41437367 -147842187 - AluY SINE Alu -11 298 220 1422 75 12 0 chr6 41437367 41437540 -147842014 - AluY SINE Alu -136 175 1 255 315 56 65 chr6 41438087 41438319 -147841235 + MIR SINE MIR 7 236 -26 426 253 17 112 chr6 41438520 41438698 -147840856 - MLT1H LTR MaLR 0 549 389 630 268 50 10 chr6 41438736 41438975 -147840579 - MLT1H LTR MaLR -250 299 8 2281 80 0 14 chr6 41439483 41439795 -147839759 + AluY SINE Alu 1 308 0 651 167 111 0 chr6 41440130 41440238 -147839316 - FLAM_A SINE Alu -13 120 1 6756 89 10 18 chr6 41440315 41441529 -147838025 + L1PA13 LINE L1 4561 5818 -345 2143 72 72 0 chr6 41441529 41441808 -147837746 + AluY SINE Alu 1 299 -12 6756 89 10 18 chr6 41441808 41442148 -147837406 + L1PA13 LINE L1 5818 6159 -4 1211 176 23 23 chr6 41442161 41442377 -147837177 - MER20 DNA MER1_type -3 216 1 1906 247 27 6 chr6 41442377 41443185 -147836369 + L1MEc LINE L1 1846 2754 -3461 2420 100 3 0 chr6 41443688 41443999 -147835555 + AluSq SINE Alu 1 312 -1 812 285 8 61 chr6 41444661 41444907 -147834647 - MIR SINE MIR 0 262 30 378 203 25 0 chr6 41445205 41445284 -147834270 + MER2 DNA MER2_type 10 90 -255 2523 50 0 20 chr6 41445292 41445595 -147833959 + AluY SINE Alu 1 297 -14 271 246 16 0 chr6 41445619 41445680 -147833874 + MER2 DNA MER2_type 284 345 0 302 377 55 7 chr6 41446799 41446945 -147832609 + HAL1 LINE L1 539 691 -1816 1147 112 51 10 chr6 41447507 41447704 -147831850 + L1MB5 LINE L1 5961 6165 -9 1833 161 62 118 chr6 41449422 41449907 -147829647 + MER66B LTR ERV1 29 486 0 407 346 69 27 chr6 41450173 41450557 -147828997 - L1MC/D LINE L1 -591 5579 5354 27 0 0 0 chr6 41450596 41450623 -147828931 + AT_rich Low_complexity Low_complexity 1 27 0 35 78 0 0 chr6 41450727 41450804 -147828750 + AT_rich Low_complexity Low_complexity 1 77 0 24 53 0 0 chr6 41450846 41450884 -147828670 + AT_rich Low_complexity Low_complexity 1 38 0 1332 162 27 12 chr6 41450884 41451143 -147828411 - L1M2 LINE L1 -635 5665 5403 391 328 57 16 chr6 41451148 41451395 -147828159 - L1MC/D LINE L1 -1153 4993 4737 240 252 89 49 chr6 41451558 41451681 -147827873 - L1MC/D LINE L1 -1537 4609 4482 1779 156 21 0 chr6 41451691 41451973 -147827581 - AluSx SINE Alu -24 288 1 273 373 8 25 chr6 41452191 41452329 -147827225 - MIR SINE MIR -66 142 8 2323 84 0 0 chr6 41452584 41452891 -147826663 - AluY SINE Alu 0 307 1 514 155 10 0 chr6 41453396 41453499 -147826055 - L1M4 LINE L1 -5141 1714 1611 1666 186 8 62 chr6 41453503 41453704 -147825850 + MLT1A1 LTR MaLR 1 173 -192 2808 38 0 0 chr6 41453704 41454045 -147825509 + L1PA4 LINE L1 5815 6155 0 1666 186 8 62 chr6 41454045 41454229 -147825325 + MLT1A1 LTR MaLR 173 365 0 5178 77 15 6 chr6 41454250 41454965 -147824589 - LTR30 LTR ERV1 0 722 1 2307 275 68 73 chr6 41454965 41455045 -147824509 - L1M4 LINE L1 -5263 1596 1517 2474 159 57 74 chr6 41455045 41455574 -147823980 + MLT2B1 LTR ERVL 1 520 0 2307 275 68 73 chr6 41455574 41457014 -147822540 - L1M4 LINE L1 -5342 1517 83 21 36 0 0 chr6 41458083 41458111 -147821443 + AT_rich Low_complexity Low_complexity 1 28 0 3552 180 52 1 chr6 41458156 41458863 -147820691 + Tigger2 DNA MER2_type 2 744 -1974 1130 162 61 0 chr6 41458930 41459158 -147820396 + Tigger2 DNA MER2_type 2461 2702 -16 4818 142 66 22 chr6 41459162 41459608 -147819946 - MER4D LTR ERV1 0 903 478 2211 86 7 13 chr6 41459608 41459909 -147819645 + AluSx SINE Alu 1 299 -13 4818 142 66 22 chr6 41459909 41460327 -147819227 - MER4D LTR ERV1 -425 478 1 372 295 161 13 chr6 41460428 41460577 -147818977 - MIR3 SINE MIR -36 172 2 2101 129 7 0 chr6 41462049 41462351 -147817203 - AluSx SINE Alu -8 304 1 204 264 110 0 chr6 41462641 41462732 -147816822 + MIR SINE MIR 129 229 -33 1987 163 0 3 chr6 41463929 41464318 -147815236 - AluSx SINE Alu 0 388 1 259 273 152 0 chr6 41464374 41464473 -147815081 - L2 LINE L2 -1 3312 3199 210 280 13 53 chr6 41464523 41464598 -147814956 + L2 LINE L2 3234 3305 -8 460 272 8 53 chr6 41465203 41465446 -147814108 - L1M4 LINE L1 -1038 5108 4877 357 238 48 62 chr6 41465581 41465791 -147813763 + L1ME3A LINE L1 5964 6170 0 2178 134 0 0 chr6 41465837 41466142 -147813412 - AluSg SINE Alu -5 305 1 180 239 56 56 chr6 41466148 41466219 -147813335 - L2 LINE L2 -16 3297 3227 204 313 15 0 chr6 41467637 41467704 -147811850 + L2 LINE L2 3242 3309 -4 204 254 30 0 chr6 41468687 41468754 -147810800 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3691 161 19 42 chr6 41469045 41469413 -147810141 - L1MA7 LINE L1 -3 6288 5913 2492 71 0 0 chr6 41469413 41469721 -147809833 - AluY SINE Alu -3 308 1 3691 161 19 42 chr6 41469721 41470028 -147809526 - L1MA7 LINE L1 -378 5913 5601 1977 134 0 45 chr6 41470028 41470342 -147809212 - AluSx SINE Alu -12 300 1 3691 161 19 42 chr6 41470342 41470476 -147809078 - L1MA7 LINE L1 -690 5601 5465 2218 120 0 3 chr6 41470476 41470775 -147808779 - AluSc SINE Alu -7 302 5 3691 161 19 42 chr6 41470775 41471414 -147808140 - L1MA7 LINE L1 -826 5465 4774 2071 125 0 0 chr6 41471414 41471718 -147807836 - AluSg1 SINE Alu 0 304 1 3691 161 19 42 chr6 41471718 41471848 -147807706 - L1MA7 LINE L1 -1517 4774 4643 855 167 0 10 chr6 41471832 41472030 -147807524 - L1MA7 LINE L1 -1726 4420 4225 * 353 205 0 0 chr6 41472028 41472111 -147807443 + L1 LINE L1 2678 2760 -3386 * 1417 178 0 0 chr6 41472097 41472361 -147807193 - L1MB1 LINE L1 -59 6130 5867 1039 151 0 41 chr6 41472364 41472582 -147806972 + L1 LINE L1 5152 5360 -786 493 188 20 0 chr6 41472582 41472683 -147806871 + MLT1A1 LTR MaLR 1 103 -262 2167 96 55 0 chr6 41473081 41473374 -147806180 + AluSc SINE Alu 1 309 0 28 0 0 0 chr6 41474110 41474138 -147805416 + AT_rich Low_complexity Low_complexity 1 28 0 689 198 85 124 chr6 41475400 41475658 -147803896 + MLT1A1 LTR MaLR 118 365 0 218 244 0 0 chr6 41476283 41476328 -147803226 + L3 LINE CR1 1115 1159 -418 22 0 0 0 chr6 41476581 41476603 -147802951 + AT_rich Low_complexity Low_complexity 1 22 0 356 127 0 24 chr6 41476728 41476799 -147802755 + Alu SINE Alu 1 51 -251 2064 133 0 20 chr6 41477150 41477450 -147802104 - AluSx SINE Alu -18 294 1 23 0 0 0 chr6 41477575 41477598 -147801956 + AT_rich Low_complexity Low_complexity 1 23 0 7189 80 8 21 chr6 41477638 41478710 -147800844 - MER11C LTR ERVK -14 1057 1 329 294 175 19 chr6 41479097 41479257 -147800297 - MIR3 SINE MIR -4 204 20 276 208 13 0 chr6 41480660 41480737 -147798817 - MER116 DNA Mariner -1 79 2 1618 210 7 0 chr6 41481017 41481308 -147798246 - AluJb SINE Alu -17 295 3 886 320 117 46 chr6 41481530 41482056 -147797498 - L2 LINE L2 -1 3312 2824 2228 111 16 7 chr6 41482056 41482362 -147797192 - AluSq SINE Alu -4 309 1 886 320 117 46 chr6 41482362 41482428 -147797126 - L2 LINE L2 -489 2824 2764 2252 109 0 0 chr6 41482428 41482721 -147796833 - AluY SINE Alu -18 293 1 886 320 117 46 chr6 41482721 41483530 -147796024 - L2 LINE L2 -549 2764 1813 213 338 12 12 chr6 41483748 41483828 -147795726 - L2 LINE L2 -5 3308 3229 223 308 105 14 chr6 41484292 41484435 -147795119 - MIR SINE MIR -18 244 89 2413 70 0 20 chr6 41484657 41484958 -147794596 + AluY SINE Alu 1 295 -16 306 176 16 5 chr6 41485045 41485167 -147794387 - MER53 DNA DNA 0 189 1 677 214 48 18 chr6 41485946 41486114 -147793440 + MER20 DNA MER1_type 37 209 -10 2239 100 3 3 chr6 41486160 41486461 -147793093 - AluSx SINE Alu -11 301 1 264 298 90 38 chr6 41486494 41486860 -147792694 - Tigger4(Zombi) DNA MER2_type -1943 788 404 216 258 15 15 chr6 41486895 41486961 -147792593 + (TA)n Simple_repeat Simple_repeat 2 67 0 339 368 56 74 chr6 41487130 41487697 -147791857 + L2 LINE L2 2715 3267 -5 405 0 0 0 chr6 41488373 41488418 -147791136 + (TG)n Simple_repeat Simple_repeat 1 45 0 297 0 0 0 chr6 41488417 41488450 -147791104 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 7575 28 0 0 chr6 41489096 41490276 -147789278 - L1PA4 LINE L1 -2 6153 4973 22 80 0 0 chr6 41490349 41490399 -147789155 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr6 41490638 41490661 -147788893 + AT_rich Low_complexity Low_complexity 1 23 0 528 280 69 16 chr6 41491315 41491504 -147788050 - MIR SINE MIR -56 206 8 288 241 11 46 chr6 41492443 41492530 -147787024 + MIR SINE MIR 50 133 -129 2370 87 0 13 chr6 41493403 41493715 -147785839 + AluSg SINE Alu 1 308 -2 582 180 16 0 chr6 41494428 41494550 -147785004 + L1MA8 LINE L1 6164 6287 -4 379 318 87 17 chr6 41495282 41495571 -147783983 - MLT1L LTR MaLR -76 539 231 324 277 0 32 chr6 41495578 41495672 -147783882 + L1MC4 LINE L1 6613 6703 -1339 1867 162 3 0 chr6 41496057 41496353 -147783201 - AluSg SINE Alu -13 297 1 1238 245 24 3 chr6 41496413 41496711 -147782843 + L1MB8 LINE L1 5520 5823 -343 421 224 0 0 chr6 41496716 41496792 -147782762 + U1 snRNA snRNA 3 78 -87 630 248 0 0 chr6 41496792 41496929 -147782625 + L1PB4 LINE L1 6020 6156 0 1106 275 42 6 chr6 41496941 41497297 -147782257 + L1MB8 LINE L1 5808 6176 -2 362 320 67 17 chr6 41497488 41497666 -147781888 + L1MC2 LINE L1 5285 5471 -650 1757 97 9 0 chr6 41497847 41498075 -147781479 + AluSq SINE Alu 1 230 -83 7230 55 19 18 chr6 41498075 41499102 -147780452 + SVA Other Other 432 1384 -2 6827 84 13 12 chr6 41499102 41500021 -147779533 - HERV9 LTR ERV1 -1920 6479 5560 1742 94 13 0 chr6 41500021 41500254 -147779300 + AluSp SINE Alu 74 309 -4 305 269 159 14 chr6 41500265 41500473 -147779081 + L1M4 LINE L1 3196 3433 -2713 2146 279 55 8 chr6 41500473 41501192 -147778362 + L1MD2 LINE L1 3196 3961 -2185 216 0 0 0 chr6 41501192 41501216 -147778338 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2146 279 55 8 chr6 41501216 41501329 -147778225 + L1MD2 LINE L1 3961 4067 -2079 3663 232 83 48 chr6 41501337 41501973 -147777581 + L1MD2 LINE L1 4268 4880 -1479 200 57 0 29 chr6 41501973 41502008 -147777546 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3663 232 83 48 chr6 41502008 41502199 -147777355 + L1MD2 LINE L1 4880 5063 -1296 209 33 33 0 chr6 41502199 41502229 -147777325 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3663 232 83 48 chr6 41502229 41503398 -147776156 + L1MD2 LINE L1 5063 6357 -2 4482 172 33 14 chr6 41503411 41503992 -147775562 + L1MC2 LINE L1 5465 6068 -276 2049 200 61 25 chr6 41503992 41504437 -147775117 - LOR1b LTR ERV1 0 461 1 4482 172 33 14 chr6 41504437 41504694 -147774860 + L1MC2 LINE L1 6068 6319 -25 21 0 0 0 chr6 41504781 41504802 -147774752 + AT_rich Low_complexity Low_complexity 1 21 0 1749 109 79 19 chr6 41504990 41505255 -147774299 - MER51A LTR ERV1 -353 281 1 2803 173 19 0 chr6 41505255 41505742 -147773812 + L1MC2 LINE L1 5567 6062 -282 245 171 0 0 chr6 41505746 41505781 -147773773 - LOR1a LTR ERV1 -2 495 461 2119 193 33 38 chr6 41505781 41506168 -147773386 - LOR1b LTR ERV1 -10 451 65 2200 87 0 7 chr6 41506168 41506485 -147773069 + AluY SINE Alu 1 311 0 2119 193 33 38 chr6 41506485 41506549 -147773005 - LOR1b LTR ERV1 -396 65 2 1260 178 34 34 chr6 41506549 41506818 -147772736 + L1MC2 LINE L1 6060 6328 -16 233 335 113 27 chr6 41507130 41507315 -147772239 - MIR SINE MIR -26 236 36 1959 129 7 0 chr6 41507604 41507890 -147771664 - AluSc SINE Alu -1 308 21 510 161 0 0 chr6 41507946 41508033 -147771521 + AluSc SINE Alu 220 306 -3 961 256 46 14 chr6 41508623 41508904 -147770650 - LTR43 LTR ERV1 -140 462 173 349 138 15 0 chr6 41509083 41509148 -147770406 - LTR60 LTR ERV1 -520 66 1 2016 152 29 37 chr6 41509494 41509870 -147769684 - THE1C LTR MaLR 0 375 3 4675 184 141 62 chr6 41509877 41511157 -147768397 - MER52A LTR ERV1 -4 1751 371 814 149 57 0 chr6 41511480 41511732 -147767822 - AluJb SINE Alu 0 422 163 2143 207 65 11 chr6 41512791 41513269 -147766285 + LTR22 LTR ERVK 1 504 -5 273 381 35 17 chr6 41513303 41513476 -147766078 + MIR SINE MIR 68 243 -19 23 0 0 0 chr6 41513810 41513833 -147765721 + AT_rich Low_complexity Low_complexity 1 23 0 2064 134 0 0 chr6 41514061 41514359 -147765195 - AluY SINE Alu -13 298 1 10468 157 23 41 chr6 41514883 41516794 -147762760 + L1P LINE L1 25 1901 -4245 6949 59 40 7 chr6 41516794 41518391 -147761163 + L1PA6 LINE L1 4522 6149 -5 10468 157 23 41 chr6 41518391 41518429 -147761125 + L1P LINE L1 1901 1938 -4208 2262 115 3 0 chr6 41519452 41519756 -147759798 + AluSg SINE Alu 1 305 -5 257 221 13 0 chr6 41519865 41519942 -147759612 - MER116 DNA Mariner -1 79 2 1481 199 14 3 chr6 41520219 41520506 -147759048 - AluJb SINE Alu -20 292 3 974 308 114 62 chr6 41520732 41521265 -147758289 - L2 LINE L2 -1 3312 2808 1828 129 68 10 chr6 41521265 41521560 -147757994 - AluSq SINE Alu -1 312 1 974 308 114 62 chr6 41521560 41522455 -147757099 - L2 LINE L2 -505 2808 1813 186 289 113 21 chr6 41523211 41523353 -147756201 - MIR SINE MIR -18 244 90 2290 103 0 6 chr6 41523544 41523855 -147755699 - AluY SINE Alu -2 309 1 378 146 15 5 chr6 41523987 41524109 -147755445 - MER53 DNA DNA 0 189 1 673 206 37 101 chr6 41524870 41525012 -147754542 + MER20 DNA MER1_type 36 165 -54 2534 71 3 0 chr6 41525012 41525322 -147754232 + AluY SINE Alu 1 311 0 673 206 37 101 chr6 41525322 41525368 -147754186 + MER20 DNA MER1_type 165 212 -7 221 265 0 0 chr6 41525846 41525895 -147753659 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 2004 91 8 0 chr6 41525988 41526251 -147753303 - AluSc SINE Alu -13 296 32 2244 118 7 0 chr6 41526306 41526612 -147752942 + AluSx SINE Alu 1 308 -4 336 325 75 86 chr6 41526647 41527004 -147752550 + L2 LINE L2 2715 3062 -251 23 0 0 0 chr6 41528560 41528583 -147750971 + AT_rich Low_complexity Low_complexity 1 23 0 2250 98 0 14 chr6 41528852 41529147 -147750407 + AluY SINE Alu 1 291 -20 1915 151 3 0 chr6 41529827 41530119 -147749435 - AluSg SINE Alu -17 293 1 381 291 103 12 chr6 41530252 41530417 -147749137 - MIR SINE MIR -75 187 8 2922 35 21 3 chr6 41530491 41530829 -147748725 - LTR14A LTR ERVK 0 344 1 11415 61 16 10 chr6 41530848 41532283 -147747271 - HERVK14 LTR ERVK -86 5859 4416 9923 50 3 0 chr6 41532282 41533451 -147746103 - HERVK14 LTR ERVK -2946 2999 1828 * 2390 142 3 3 chr6 41535029 41535389 -147744165 - HERVK14 LTR ERVK -5583 362 3 2563 61 40 0 chr6 41535391 41535717 -147743837 - LTR14A LTR ERVK 0 344 6 305 336 66 7 chr6 41536597 41536734 -147742820 + MIR SINE MIR 50 194 -68 2383 73 3 0 chr6 41537260 41537549 -147742005 + AluY SINE Alu 1 290 -21 2195 108 10 10 chr6 41538485 41538792 -147740762 + AluSc SINE Alu 1 307 -2 677 127 51 0 chr6 41538890 41539008 -147740546 + L1MA8 LINE L1 6164 6287 -4 215 324 10 0 chr6 41544398 41544500 -147735054 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 518 165 22 0 chr6 41544603 41544694 -147734860 - L1MD3 LINE L1 -13 7982 7890 848 302 13 15 chr6 41544708 41545238 -147734316 - SVA Other Other 0 1386 858 322 244 282 34 chr6 41646065 41646356 -147633198 + L2 LINE L2 2912 3274 -39 304 300 0 11 chr6 41646579 41646669 -147632885 - MER81 DNA DNA -22 92 4 2110 179 11 0 chr6 41646853 41647228 -147632326 + MLT1B LTR MaLR 1 379 -11 1417 199 52 0 chr6 41648368 41648695 -147630859 - L1MB5 LINE L1 -10 6164 5821 21 0 0 0 chr6 41649001 41649022 -147630532 + AT_rich Low_complexity Low_complexity 1 21 0 7209 78 7 40 chr6 41650389 41652186 -147627368 - L1PA7 LINE L1 -1 6153 4428 403 276 28 11 chr6 41652188 41652319 -147627235 - FRAM SINE Alu -9 157 55 302 320 55 20 chr6 41652661 41652861 -147626693 - MLT1L LTR MaLR -5 610 404 21 0 0 0 chr6 41654904 41654925 -147624629 + AT_rich Low_complexity Low_complexity 1 21 0 417 335 43 0 chr6 41655706 41655891 -147623663 - MIR SINE MIR -51 211 19 2324 100 0 7 chr6 41657817 41658118 -147621436 - AluSg SINE Alu -11 299 1 24 0 0 0 chr6 41658449 41658473 -147621081 + AT_rich Low_complexity Low_complexity 1 24 0 207 207 37 44 chr6 41658544 41658679 -147620875 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 21 36 0 0 chr6 41658710 41658738 -147620816 + AT_rich Low_complexity Low_complexity 1 28 0 24 100 0 0 chr6 41659230 41659310 -147620244 + AT_rich Low_complexity Low_complexity 1 80 0 248 178 32 70 chr6 41659360 41659545 -147620009 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 29 60 0 0 chr6 41659582 41659632 -147619922 + AT_rich Low_complexity Low_complexity 1 50 0 207 302 112 15 chr6 41659887 41660092 -147619462 - L2 LINE L2 -167 3146 2922 3651 180 13 28 chr6 41661297 41661720 -147617834 + L1MB1 LINE L1 5408 5817 -351 2153 121 3 0 chr6 41661720 41662009 -147617545 + AluSg SINE Alu 1 290 -20 3651 180 13 28 chr6 41662009 41662296 -147617258 + L1MB1 LINE L1 5817 6107 -61 415 272 48 7 chr6 41662313 41662460 -147617094 + MIR SINE MIR 97 249 -13 497 292 83 35 chr6 41662491 41662925 -147616629 - L2 LINE L2 -137 3176 2712 1280 180 6 84 chr6 41662925 41663248 -147616306 - AluJb SINE Alu -14 298 1 497 292 83 35 chr6 41663248 41663272 -147616282 - L2 LINE L2 -601 2712 2691 289 185 36 0 chr6 41663272 41663334 -147616220 + L1MB1 LINE L1 6103 6166 -2 1670 156 184 19 chr6 41666841 41667206 -147612348 + MSTA LTR MaLR 1 425 -3 257 200 50 100 chr6 41667676 41667756 -147611798 - L1ME LINE L1 -476 5694 5619 658 129 89 0 chr6 41667847 41667971 -147611583 - L1MD1 LINE L1 0 6242 6108 3472 264 27 17 chr6 41667971 41669353 -147610201 - L1 LINE L1 -3115 4450 3045 1317 118 0 0 chr6 41669353 41669531 -147610023 - LTR1 LTR ERV1 0 785 608 1235 191 107 105 chr6 41672374 41672803 -147606751 - MLT1C LTR MaLR -4 463 34 489 237 23 0 chr6 41673247 41673378 -147606176 + MER94 DNA DNA 1 134 0 1952 182 14 6 chr6 41673682 41674044 -147605510 - MLT1A1 LTR MaLR 0 365 1 1415 234 89 30 chr6 41678202 41678638 -147600916 - MLT1C LTR MaLR 0 467 6 188 235 39 0 chr6 41678980 41679031 -147600523 - MIR SINE MIR -62 146 94 241 207 12 24 chr6 41679660 41679742 -147599812 - L1M4 LINE L1 -3166 2980 2900 572 286 48 31 chr6 41680488 41680951 -147598603 + HERV16 LTR ERVL 596 1091 -3905 2340 112 21 21 chr6 41681355 41681730 -147597824 - THE1C LTR MaLR 0 375 1 1894 134 0 8 chr6 41681768 41682029 -147597525 + AluSx SINE Alu 2 260 -52 269 265 2 0 chr6 41682039 41682096 -147597458 + L1MC1 LINE L1 6240 6293 -40 2210 125 0 0 chr6 41682385 41682690 -147596864 - AluSx SINE Alu -7 305 1 4761 151 52 23 chr6 41683318 41685103 -147594451 + L1PA15 LINE L1 4351 6164 -1 1042 290 60 37 chr6 41685196 41685852 -147593702 + L1MEc LINE L1 1393 2063 -4333 201 122 27 68 chr6 41685907 41685981 -147593573 + A-rich Low_complexity Low_complexity 1 71 0 531 263 96 50 chr6 41686528 41687040 -147592514 + L1M3 LINE L1 713 1250 -5296 386 229 115 0 chr6 41687047 41687143 -147592411 + MLT2B3 LTR ERVL 125 231 -323 840 236 137 19 chr6 41687143 41687465 -147592089 + L1ME LINE L1 5400 5759 -407 587 232 0 7 chr6 41687464 41687602 -147591952 + L1M3 LINE L1 5295 5431 -1213 * 302 29 0 0 chr6 41687655 41687690 -147591864 + U2 snRNA snRNA 1 35 -153 1301 208 85 11 chr6 41687720 41688200 -147591354 + L1M3 LINE L1 5434 5941 -721 1032 179 73 5 chr6 41688192 41688384 -147591170 + L1MA9 LINE L1 6041 6251 -61 * 1921 107 7 4 chr6 41688384 41688654 -147590900 + AluSx SINE Alu 38 308 -4 1032 179 73 5 chr6 41688654 41688679 -147590875 + L1MA9 LINE L1 6251 6273 -39 2096 133 3 0 chr6 41688697 41688990 -147590564 + AluSx SINE Alu 1 294 -18 2452 39 43 0 chr6 41688990 41689271 -147590283 + AluY SINE Alu 1 294 -17 250 213 0 0 chr6 41689286 41689333 -147590221 + L1M3 LINE L1 5923 5969 -709 * 588 185 15 0 chr6 41689329 41689459 -147590095 + L1ME2 LINE L1 5611 5742 -422 1351 257 73 75 chr6 41689467 41690027 -147589527 - MLT1F1 LTR MaLR -8 559 1 1760 199 38 28 chr6 41690027 41690449 -147589105 + L1ME2 LINE L1 5738 6163 -1 455 306 31 19 chr6 41690923 41691083 -147588471 + MIR SINE MIR 14 175 -87 389 274 127 0 chr6 41691397 41691554 -147588000 + MIR SINE MIR 57 233 -29 24 0 0 0 chr6 41692938 41692962 -147586592 + AT_rich Low_complexity Low_complexity 1 24 0 2094 106 0 47 chr6 41692967 41693268 -147586286 - AluSq SINE Alu -26 287 1 322 283 94 36 chr6 41693268 41693544 -147586010 + L1MC4 LINE L1 7748 8039 -3 21 0 0 0 chr6 41693701 41693722 -147585832 + AT_rich Low_complexity Low_complexity 1 21 0 202 229 16 16 chr6 41695594 41695655 -147583899 + GA-rich Low_complexity Low_complexity 1 61 0 2572 221 25 7 chr6 41695822 41696374 -147583180 + REP3 LTR ERV 1 562 0 1822 202 23 8 chr6 41696420 41696771 -147582783 - MLT1A1 LTR MaLR -3 362 7 554 265 50 42 chr6 41697716 41698035 -147581519 + L1MEc LINE L1 1883 2168 -4372 3947 145 28 2 chr6 41698155 41698774 -147580780 + MER41B LTR ERV1 1 635 0 3404 246 27 55 chr6 41698776 41699949 -147579605 + L1M4 LINE L1 2 1141 -5401 1347 168 15 4 chr6 41700090 41700352 -147579202 + MLT1B LTR MaLR 115 379 -11 1697 263 21 26 chr6 41701457 41702112 -147577442 - L1M4 LINE L1 -866 5280 4629 1015 217 40 52 chr6 41702151 41702478 -147577076 + L1M4 LINE L1 4283 4605 -2039 495 334 12 15 chr6 41702520 41702846 -147576708 - L1MEc LINE L1 -4621 1775 1451 278 267 85 28 chr6 41702879 41703055 -147576499 + L1M4 LINE L1 5245 5430 -1214 1020 221 46 63 chr6 41703543 41704000 -147575554 + Charlie1b DNA MER1_type 37 485 -38 1247 218 56 24 chr6 41704674 41705031 -147574523 + MLT1B LTR MaLR 25 396 0 1369 47 0 0 chr6 41706663 41706835 -147572719 - L1PA4 LINE L1 -591 5564 5393 * 4787 41 0 3 chr6 41706825 41707483 -147572071 + L1PA4 LINE L1 5545 6155 0 231 240 153 45 chr6 41709239 41709549 -147570005 + L2 LINE L2 2853 3252 -61 13002 198 34 19 chr6 41709549 41712892 -147566662 + L1PA12 LINE L1 2802 6206 -1378 21 57 0 0 chr6 41713777 41713812 -147565742 + AT_rich Low_complexity Low_complexity 1 35 0 1947 137 14 0 chr6 41715081 41715366 -147564188 + AluSx SINE Alu 12 300 -12 21 36 0 0 chr6 41715478 41715506 -147564048 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 41716960 41716988 -147562566 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 41717524 41717545 -147562009 + AT_rich Low_complexity Low_complexity 1 21 0 405 261 96 27 chr6 41717897 41718085 -147561469 - MLT1G LTR MaLR -1 589 389 8171 201 45 30 chr6 41718222 41721005 -147558549 + L1MA9 LINE L1 3477 6305 -7 1840 175 53 42 chr6 41721031 41721733 -147557821 + L1MCa LINE L1 1127 1927 -4499 232 172 52 0 chr6 41721740 41721798 -147557756 + L1MCa LINE L1 1998 2058 -4368 * 2214 136 5 22 chr6 41721794 41722198 -147557356 - L1P5 LINE L1 -411 5745 5349 1496 189 0 6 chr6 41722193 41722521 -147557033 + L1P5 LINE L1 5008 5333 -813 * 290 285 39 0 chr6 41722890 41723020 -147556534 + LTR67 LTR ERVL 411 545 -12 529 168 88 16 chr6 41723099 41723224 -147556330 + THE1C LTR MaLR 1 134 -241 247 300 10 30 chr6 41723237 41723337 -147556217 + MLT1J LTR MaLR 346 443 -68 292 280 0 51 chr6 41723564 41723682 -147555872 + L1MC4 LINE L1 7336 7447 -595 511 211 66 119 chr6 41723727 41724154 -147555400 + L1MC5 LINE L1 7508 7911 -50 21 57 0 0 chr6 41724545 41724580 -147554974 + AT_rich Low_complexity Low_complexity 1 35 0 2314 89 6 0 chr6 41724614 41724927 -147554627 + L1PA13 LINE L1 5844 6158 -5 191 36 36 0 chr6 41726119 41726147 -147553407 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 274 256 24 143 chr6 41726785 41726858 -147552696 - L2 LINE L2 -216 3056 3013 2557 64 0 6 chr6 41726858 41727169 -147552385 + AluY SINE Alu 1 309 -2 274 256 24 143 chr6 41727169 41727263 -147552291 - L2 LINE L2 -259 3013 2909 283 435 36 0 chr6 41727768 41727906 -147551648 - L2 LINE L2 -14 3258 3116 244 348 101 40 chr6 41728138 41728365 -147551189 - L2 LINE L2 -436 2878 2638 237 296 8 104 chr6 41728760 41728885 -147550669 - L3 LINE CR1 -42 1535 1423 1902 119 24 7 chr6 41728905 41729199 -147550355 + L1PB4 LINE L1 5852 6150 -6 24 0 0 0 chr6 41729569 41729593 -147549961 + AT_rich Low_complexity Low_complexity 1 24 0 5363 151 26 11 chr6 41731437 41732826 -147546728 - L1MA8 LINE L1 -5 6286 4874 836 158 19 0 chr6 41732823 41732981 -147546573 - L1MA8 LINE L1 -2238 3908 3748 * 2687 237 11 27 chr6 41734405 41735068 -147544486 - MER82 DNA MER2_type -1 652 1 393 294 84 8 chr6 41735074 41735193 -147544361 - MIR SINE MIR -65 143 16 3162 24 0 0 chr6 41735362 41735743 -147543811 + L1P2 LINE L1 5433 5813 -342 774 237 77 67 chr6 41735751 41736126 -147543428 - L1MC4 LINE L1 -214 7828 7450 21 36 0 0 chr6 41736472 41736500 -147543054 + AT_rich Low_complexity Low_complexity 1 28 0 199 339 27 45 chr6 41738152 41738264 -147541290 - MIR SINE MIR -128 134 25 456 316 26 94 chr6 41739857 41739978 -147539576 + MIR SINE MIR 5 133 -129 2106 118 44 0 chr6 41739978 41740299 -147539255 - L1PA15 LINE L1 -6 6159 5825 195 42 0 0 chr6 41740306 41740330 -147539224 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 456 316 26 94 chr6 41740330 41740466 -147539088 + MIR SINE MIR 139 252 -10 1594 52 0 0 chr6 41741451 41741642 -147537912 + AluY SINE Alu 114 304 -7 1574 247 136 21 chr6 41741648 41742531 -147537023 + L1ME3A LINE L1 3685 4668 -1478 928 237 63 19 chr6 41742603 41742919 -147536635 + L1ME3A LINE L1 5428 5757 -413 391 184 68 19 chr6 41742980 41743083 -147536471 + L1ME3A LINE L1 6048 6155 -15 379 313 73 30 chr6 41743093 41743326 -147536228 + L1MC/D LINE L1 5032 5274 -872 369 183 0 21 chr6 41743379 41743472 -147536082 + L1MC/D LINE L1 5338 5428 -2380 2317 241 60 86 chr6 41743674 41744663 -147534891 + L1MD2 LINE L1 142 1104 -5439 1313 218 18 29 chr6 41744662 41745048 -147534506 + L1MD2 LINE L1 1313 1694 -4846 * 3933 234 70 16 chr6 41745141 41747640 -147531914 + L1MD2 LINE L1 4067 6710 -43 252 307 16 8 chr6 41747993 41748120 -147531434 + (TA)n Simple_repeat Simple_repeat 2 129 0 1831 185 10 0 chr6 41748641 41748939 -147530615 - AluSx SINE Alu -11 301 1 527 234 0 0 chr6 41749388 41749495 -147530059 + L1MC/D LINE L1 5665 5771 -588 464 356 172 4 chr6 41749512 41750059 -147529495 + L2 LINE L2 2334 2972 -342 2586 64 0 0 chr6 41750074 41750385 -147529169 - AluY SINE Alu 0 311 1 1008 291 86 39 chr6 41750464 41750952 -147528602 + L2 LINE L2 715 1225 -2089 1098 189 8 29 chr6 41750989 41751227 -147528327 + L1M3e LINE L1 1728 1960 -5070 965 318 163 13 chr6 41751254 41751808 -147527746 + L2 LINE L2 1310 1946 -1368 8404 219 74 2 chr6 41753955 41755730 -147523824 - L1M2 LINE L1 -4944 1905 2 1848 115 67 11 chr6 41755833 41756143 -147523411 - AluSx SINE Alu 0 312 1 614 327 45 5 chr6 41756565 41756785 -147522769 + MIR SINE MIR 31 259 -3 812 216 5 44 chr6 41756801 41757005 -147522549 + AluJo SINE Alu 117 312 0 30 59 0 0 chr6 41757006 41757057 -147522497 + AT_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr6 41757282 41757316 -147522238 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr6 41757589 41757622 -147521932 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 41758422 41758450 -147521104 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 41761812 41761835 -147517719 + AT_rich Low_complexity Low_complexity 1 23 0 1038 250 80 9 chr6 41762105 41762429 -147517125 - L1MC4a LINE L1 -1942 5866 5520 537 232 56 14 chr6 41763937 41764079 -147515475 - MLT1G LTR MaLR -1 589 442 366 23 0 0 chr6 41764084 41764127 -147515427 + (TC)n Simple_repeat Simple_repeat 1 43 0 369 237 101 8 chr6 41764243 41764368 -147515186 - MLT1H1 LTR MaLR -361 188 1 349 315 61 90 chr6 41764381 41764727 -147514827 - MLT1H1-int LTR MaLR -14 1357 1022 1922 155 3 19 chr6 41764806 41765122 -147514432 - AluSx SINE Alu -1 311 1 1862 200 49 30 chr6 41765279 41765773 -147513781 - L1 LINE L1 -1347 5759 5257 4194 212 62 13 chr6 41765792 41767277 -147512277 + L1MA10 LINE L1 4757 6323 -11 713 199 72 18 chr6 41767735 41767901 -147511653 + MLT2B1 LTR ERVL 3 177 -343 272 159 0 0 chr6 41767899 41767943 -147511611 + MLT2C2 LTR ERVL 421 464 0 * 1462 327 68 17 chr6 41768194 41769248 -147510306 + HERV16 LTR ERVL 900 2072 -2924 969 318 163 13 chr6 41769870 41770424 -147509130 - L2 LINE L2 -1368 1946 1310 1074 193 8 29 chr6 41770451 41770689 -147508865 - L1 LINE L1 -5070 1960 1728 1008 291 86 39 chr6 41770726 41771214 -147508340 - L2 LINE L2 -2089 1225 715 2496 64 0 0 chr6 41771293 41771591 -147507963 + AluY SINE Alu 1 298 -13 452 356 172 4 chr6 41771606 41772153 -147507401 - L2 LINE L2 -342 2972 2334 527 234 0 0 chr6 41772170 41772277 -147507277 - L1MC/D LINE L1 -588 5771 5665 1797 184 10 0 chr6 41772726 41773025 -147506529 + AluSx SINE Alu 1 302 -10 243 309 16 8 chr6 41773546 41773672 -147505882 + (TA)n Simple_repeat Simple_repeat 2 128 0 305 294 92 12 chr6 41773672 41773835 -147505719 - L1MC/D LINE L1 -1993 5815 5640 4355 234 69 16 chr6 41774026 41776527 -147503027 - L1MD2 LINE L1 -43 6710 4067 1434 215 18 29 chr6 41776620 41777006 -147502548 - L1MD2 LINE L1 -4846 1694 1313 * 2659 216 83 111 chr6 41777005 41777996 -147501558 - L1MD2 LINE L1 -5439 1104 142 390 183 0 21 chr6 41778198 41778291 -147501263 - L1MC/D LINE L1 -2380 5428 5338 24 0 0 0 chr6 41778332 41778356 -147501198 + AT_rich Low_complexity Low_complexity 1 24 0 438 175 68 19 chr6 41778587 41778690 -147500864 - L1ME3A LINE L1 -15 6224 6117 1021 221 85 18 chr6 41778736 41779067 -147500487 - L1ME3A LINE L1 -382 5849 5497 2824 286 83 21 chr6 41779139 41780028 -147499526 - L1ME3A LINE L1 -1478 4737 3904 2503 59 0 0 chr6 41780028 41780333 -147499221 - AluY SINE Alu -6 305 1 2824 286 83 21 chr6 41780333 41780896 -147498658 - L1ME3A LINE L1 -2311 3904 3377 204 97 0 0 chr6 41780896 41780927 -147498627 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2824 286 83 21 chr6 41780927 41781497 -147498057 - L1ME3A LINE L1 -2838 3377 2558 285 29 0 0 chr6 41781653 41781687 -147497867 + (TTA)n Simple_repeat Simple_repeat 1 34 0 280 332 83 18 chr6 41783570 41783799 -147495755 - L2 LINE L2 -14 3299 3056 227 216 0 0 chr6 41783818 41783855 -147495699 + MER21B LTR ERV1 59 95 -768 667 148 9 0 chr6 41784061 41784176 -147495378 - L1MA9 LINE L1 0 6312 6197 316 161 0 16 chr6 41784203 41784265 -147495289 - L1MA4 LINE L1 -217 6083 6023 288 253 11 0 chr6 41784261 41784348 -147495206 - L1ME3A LINE L1 -4088 2308 2221 * 2301 279 60 21 chr6 41784357 41785624 -147493930 - L1MEd LINE L1 -4145 2251 904 237 216 103 10 chr6 41785772 41785869 -147493685 - L1MEd LINE L1 -6241 155 50 794 134 0 30 chr6 41786066 41786200 -147493354 - FLAM_C SINE Alu -3 130 1 5190 142 33 7 chr6 41786615 41787879 -147491675 + L1PA16 LINE L1 4870 6156 -10 40 37 0 0 chr6 41787879 41787933 -147491621 + AT_rich Low_complexity Low_complexity 1 54 0 514 300 148 30 chr6 41791163 41791466 -147488088 + L2 LINE L2 2034 2372 -942 28603 124 11 64 chr6 41791483 41793006 -147486548 - L1PA8 LINE L1 0 6172 4570 2910 0 0 0 chr6 41793006 41793317 -147486237 - AluYa5 SINE Alu 0 311 1 28603 124 11 64 chr6 41793317 41798311 -147481243 - L1PA8 LINE L1 -1602 4570 12 249 314 21 89 chr6 41798463 41798654 -147480900 + MIR SINE MIR 81 258 -4 4107 163 29 0 chr6 41798783 41799509 -147480045 - L1MA7 LINE L1 -44 6247 5501 21 36 0 0 chr6 41800042 41800070 -147479484 + AT_rich Low_complexity Low_complexity 1 28 0 369 322 28 21 chr6 41800461 41800604 -147478950 + MIR SINE MIR 72 215 -47 222 242 34 88 chr6 41804268 41804466 -147475088 + L2 LINE L2 3039 3291 -22 20492 125 19 4 chr6 41804466 41808595 -147470959 + L1PA10 LINE L1 1975 6164 -4 3830 124 68 81 chr6 41809451 41810246 -147469308 + LTR1 LTR ERV1 1 785 0 5676 160 40 13 chr6 41810602 41812653 -147466901 - L1MA8 LINE L1 -10 6281 4186 204 390 20 20 chr6 41812840 41812986 -147466568 + MIR SINE MIR 5 150 -112 409 330 122 17 chr6 41813069 41813299 -147466255 - MIR SINE MIR -7 255 2 1725 164 35 57 chr6 41815022 41815394 -147464160 + THE1B LTR MaLR 1 364 0 2339 152 59 51 chr6 41816239 41816764 -147462790 + L1MA10 LINE L1 5806 6334 0 1842 113 75 39 chr6 41816800 41817162 -147462392 - THE1C LTR MaLR 0 375 1 2666 27 0 0 chr6 41817886 41818187 -147461367 - AluYa5 SINE Alu -10 301 1 565 313 27 20 chr6 41819085 41819379 -147460175 - L1ME1 LINE L1 0 6166 5871 269 322 35 0 chr6 41819978 41820065 -147459489 - L2 LINE L2 -1403 1911 1822 327 175 16 0 chr6 41820263 41820326 -147459228 - MER20 DNA MER1_type 0 219 156 201 255 0 0 chr6 41820326 41820377 -147459177 - MIR SINE MIR -122 140 90 10791 223 20 29 chr6 41820771 41822588 -147456966 - L1PBb LINE L1 -1343 6241 4410 3773 45 0 2 chr6 41822588 41823051 -147456503 + L1PA5 LINE L1 5684 6145 -9 10791 223 20 29 chr6 41823051 41825406 -147454148 - L1PBb LINE L1 -3174 4410 1867 422 304 20 7 chr6 41825402 41825550 -147454004 - L1PBb LINE L1 -7431 150 1 * 2161 100 3 7 chr6 41825615 41825906 -147453648 + AluSc SINE Alu 1 290 -19 837 187 48 0 chr6 41826024 41826190 -147453364 + FAM SINE Alu 2 175 0 2098 123 0 7 chr6 41828951 41829235 -147450319 + AluSx SINE Alu 5 286 -26 22 0 0 0 chr6 41830393 41830415 -147449139 + AT_rich Low_complexity Low_complexity 1 22 0 976 144 0 7 chr6 41830529 41830675 -147448879 - AluSg/x SINE Alu -19 291 147 663 255 26 42 chr6 41832546 41832738 -147446816 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr6 41833123 41833145 -147446409 + AT_rich Low_complexity Low_complexity 1 22 0 279 228 0 0 chr6 41833247 41833304 -147446250 - L2 LINE L2 -1 3312 3256 286 260 193 31 chr6 41833693 41833824 -147445730 + MIR SINE MIR 33 181 -27 6732 134 9 6 chr6 41833896 41835563 -147443991 + L1PB1 LINE L1 4477 6150 -1 2879 222 94 22 chr6 41835548 41836463 -147443091 + L1MC4 LINE L1 7061 8041 -1 * 201 74 0 0 chr6 41836470 41836497 -147443057 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 396 221 21 0 chr6 41836506 41836601 -147442953 + L1M4 LINE L1 3586 3682 -2464 189 74 0 0 chr6 41836602 41836629 -147442925 + (CA)n Simple_repeat Simple_repeat 2 28 0 374 262 101 42 chr6 41836632 41836918 -147442636 + L1M4 LINE L1 3882 4184 -1962 933 249 47 17 chr6 41837021 41837383 -147442171 + L1M4 LINE L1 4391 4763 -1383 560 296 139 27 chr6 41837425 41837827 -147441727 + L1ME1 LINE L1 2951 3397 -2749 481 371 102 12 chr6 41837858 41838200 -147441354 + L2 LINE L2 2880 3252 -61 309 299 15 44 chr6 41838234 41838371 -147441183 + L1ME1 LINE L1 3872 4004 -2142 374 248 56 56 chr6 41838560 41838685 -147440869 + MLT1G1 LTR MaLR 247 371 -224 252 258 30 0 chr6 41838739 41838805 -147440749 + MLT1G1 LTR MaLR 488 555 0 598 314 92 42 chr6 41838844 41839006 -147440548 + L1ME1 LINE L1 4074 4226 -1920 2531 44 0 3 chr6 41839006 41839304 -147440250 + AluY SINE Alu 1 297 -14 598 314 92 42 chr6 41839304 41840405 -147439149 + L1ME1 LINE L1 4226 5400 -746 341 169 0 22 chr6 41840918 41841007 -147438547 + CT-rich Low_complexity Low_complexity 3 89 0 1739 207 61 71 chr6 41841279 41841787 -147437767 - MER77 LTR ERV1 -102 503 1 769 314 28 8 chr6 41841894 41842146 -147437408 + MIR SINE MIR 6 262 0 360 246 0 27 chr6 41842288 41842398 -147437156 + L1MC4a LINE L1 7695 7801 -7 370 323 85 32 chr6 41842405 41842922 -147436632 + L1ME1 LINE L1 5433 5961 -205 2182 243 59 54 chr6 41843296 41843628 -147435926 + L1MC/D LINE L1 4409 4738 -1498 2445 49 0 3 chr6 41843628 41843914 -147435640 + AluY SINE Alu 6 290 -21 2182 243 59 54 chr6 41843914 41844220 -147435334 + L1MC/D LINE L1 4738 5041 -1195 1799 130 6 93 chr6 41844220 41844543 -147435011 + AluSx SINE Alu 1 295 -17 2182 243 59 54 chr6 41844543 41844979 -147434575 + L1MC/D LINE L1 5041 5489 -747 707 85 0 0 chr6 41844981 41845075 -147434479 - AluY SINE Alu -217 94 1 2864 115 0 0 chr6 41845140 41845548 -147434006 + L1PA7 LINE L1 1 408 -6053 * 16504 92 6 3 chr6 41845543 41847915 -147431639 + L1PA7 LINE L1 3287 5665 -796 1407 130 5 5 chr6 41847923 41848130 -147431424 - AluSc SINE Alu -102 207 1 6182 65 4 13 chr6 41848132 41848956 -147430598 + L1PA7 LINE L1 5654 6469 0 206 132 0 26 chr6 41849462 41849500 -147430054 + (CA)n Simple_repeat Simple_repeat 2 38 0 279 330 97 39 chr6 41849554 41849760 -147429794 + MIR SINE MIR 36 253 -9 21 0 0 0 chr6 41852007 41852028 -147427526 + AT_rich Low_complexity Low_complexity 1 21 0 262 163 0 0 chr6 41853552 41853601 -147425953 - L1PA15 LINE L1 -16 6149 6101 204 97 0 0 chr6 41853942 41853973 -147425581 + (TG)n Simple_repeat Simple_repeat 2 32 0 498 0 27 40 chr6 41854068 41854143 -147425411 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 267 345 58 35 chr6 41854289 41854550 -147425004 + L2 LINE L2 1831 2097 -1217 2436 87 3 0 chr6 41855353 41855662 -147423892 + AluSx SINE Alu 1 310 -2 222 371 22 0 chr6 41855925 41856014 -147423540 + L2 LINE L2 3174 3264 -8 259 368 76 11 chr6 41856618 41856803 -147422751 - L3 LINE CR1 -2 1575 1379 10048 28 9 0 chr6 41856806 41858783 -147420771 - L1PA4 LINE L1 -3 6152 4166 234 158 0 0 chr6 41858805 41858843 -147420711 - L1MB1 LINE L1 -30 6159 6122 27 49 0 0 chr6 41858850 41858891 -147420663 + AT_rich Low_complexity Low_complexity 1 41 0 247 99 56 14 chr6 41858946 41859017 -147420537 + (TA)n Simple_repeat Simple_repeat 1 74 0 25 75 0 0 chr6 41859707 41859760 -147419794 + AT_rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr6 41859878 41859912 -147419642 + AT_rich Low_complexity Low_complexity 1 34 0 994 110 0 0 chr6 41860212 41860348 -147419206 + AluJb SINE Alu 1 136 -176 321 226 20 69 chr6 41860357 41860459 -147419095 - L1MEc LINE L1 -2979 3236 3140 3013 118 31 4 chr6 41860460 41860945 -147418609 - Tigger1 DNA MER2_type -1718 700 203 3281 50 5 9 chr6 41860953 41861397 -147418157 - LTR7 LTR ERV1 -8 442 1 869 160 155 0 chr6 41861397 41861575 -147417979 - Tigger1 DNA MER2_type -2211 207 2 2020 201 124 68 chr6 41861606 41862428 -147417126 - MER52A LTR ERV1 -737 1018 151 1551 248 110 52 chr6 41862632 41863299 -147416255 - L1MEc LINE L1 -5289 1107 389 1912 131 70 25 chr6 41863299 41863658 -147415896 - THE1C LTR MaLR 0 375 1 1551 248 110 52 chr6 41863658 41863755 -147415799 - L1MEc LINE L1 -6007 389 299 209 235 20 0 chr6 41863822 41863873 -147415681 + L2 LINE L2 3262 3313 0 40 49 0 0 chr6 41863938 41863999 -147415555 + AT_rich Low_complexity Low_complexity 1 61 0 26 30 0 0 chr6 41864364 41864397 -147415157 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 41867981 41868002 -147411552 + AT_rich Low_complexity Low_complexity 1 21 0 895 122 8 0 chr6 41868003 41868126 -147411428 - FLAM_C SINE Alu -19 124 1 1938 267 51 30 chr6 41868737 41869459 -147410095 + L2 LINE L2 1271 2007 -1307 22 0 0 0 chr6 41870761 41870783 -147408771 + AT_rich Low_complexity Low_complexity 1 22 0 1107 216 0 14 chr6 41871094 41871316 -147408238 + MER20 DNA MER1_type 1 219 0 206 103 0 26 chr6 41871787 41871826 -147407728 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 187 386 101 16 chr6 41875677 41875983 -147403571 + L2 LINE L2 1164 1495 -1819 250 263 119 34 chr6 41876219 41876337 -147403217 - Charlie8 DNA MER1_type -2177 240 113 885 28 0 0 chr6 41876363 41876469 -147403085 + L1PA2 LINE L1 6050 6155 0 1315 272 47 17 chr6 41876661 41877253 -147402301 - L1ME3A LINE L1 -232 5938 5329 427 284 72 28 chr6 41877515 41877878 -147401676 + L1M4 LINE L1 3868 4246 -1900 361 241 80 70 chr6 41877888 41878075 -147401479 + L1M4 LINE L1 4519 4707 -1439 2324 219 36 11 chr6 41878076 41878628 -147400926 - MER4D LTR ERV1 0 903 338 * 2863 107 8 30 chr6 41878626 41878856 -147400698 + MER4D LTR ERV1 133 349 -554 2816 159 39 76 chr6 41878856 41879491 -147400063 - LTR9 LTR ERV1 0 612 1 2863 107 8 30 chr6 41879491 41879729 -147399825 + MER4D LTR ERV1 349 591 -312 2458 141 59 15 chr6 41879729 41880190 -147399364 - L1PA14 LINE L1 0 6161 5681 1384 162 0 5 chr6 41880199 41880421 -147399133 - AluJb SINE Alu -14 298 78 2984 84 0 14 chr6 41880459 41880899 -147398655 - L1PA14 LINE L1 -474 5687 5254 * 3219 202 20 27 chr6 41880896 41881703 -147397851 - L1PA14 LINE L1 -1214 4932 4132 380 142 0 52 chr6 41881713 41881847 -147397707 + (TA)n Simple_repeat Simple_repeat 2 128 0 28664 113 9 11 chr6 41881851 41887412 -147392142 - L1PA7 LINE L1 -9 6145 600 231 196 18 0 chr6 41887602 41887658 -147391896 - L1MA5 LINE L1 -10 6290 6234 435 95 14 0 chr6 41887666 41887740 -147391814 + L1MA4 LINE L1 6102 6176 -124 1065 238 39 10 chr6 41888027 41888334 -147391220 + L1P4 LINE L1 3310 3625 -2521 2443 128 41 16 chr6 41888335 41888774 -147390780 - LTR7 LTR ERV1 0 450 1 4396 115 7 15 chr6 41888774 41889498 -147390056 - HERVH LTR ERV1 0 7713 6996 * 14579 196 14 20 chr6 41889492 41894632 -147384922 - HERVH LTR ERV1 -1878 5835 791 891 202 30 53 chr6 41894687 41895225 -147384329 - HERVH LTR ERV1 -7254 459 1 2210 145 45 27 chr6 41895225 41895667 -147383887 - LTR7 LTR ERV1 0 450 1 4392 195 12 19 chr6 41895667 41896640 -147382914 + L1P4 LINE L1 3622 4588 -1558 467 133 89 0 chr6 41896650 41896740 -147382814 + MER4A LTR ERV1 1 98 -566 1621 139 11 72 chr6 41896740 41897108 -147382446 + MER4A LTR ERV1 261 664 0 2549 205 12 49 chr6 41897112 41897248 -147382306 + L1P4 LINE L1 4599 4738 -1408 279 0 0 0 chr6 41897248 41897279 -147382275 + (CA)n Simple_repeat Simple_repeat 2 32 0 2549 205 12 49 chr6 41897279 41897873 -147381681 + L1P4 LINE L1 4738 5302 -844 1705 119 15 0 chr6 41897865 41898134 -147381420 + L1P4 LINE L1 5510 5782 -384 * 2193 100 10 0 chr6 41898135 41898426 -147381128 + AluSc SINE Alu 1 294 -15 5783 220 99 24 chr6 41898432 41900466 -147379088 - L1M4c LINE L1 -4734 2225 43 391 310 150 42 chr6 41900743 41901195 -147378359 + L1MC/D LINE L1 5298 5798 -2010 24 96 0 0 chr6 41901393 41901466 -147378088 + AT_rich Low_complexity Low_complexity 1 73 0 363 311 30 18 chr6 41902885 41903052 -147376502 - ERVL LTR ERVL -3916 1848 1680 2097 170 23 0 chr6 41903052 41903399 -147376155 - MLT1A1 LTR MaLR 0 365 11 494 181 181 6 chr6 41904124 41904284 -147375270 - L1ME LINE L1 -717 5445 5258 233 289 52 22 chr6 41904334 41904469 -147375085 - L1P LINE L1 -2385 3761 3623 44 75 0 0 chr6 41904809 41904902 -147374652 + AT_rich Low_complexity Low_complexity 1 93 0 2095 78 58 0 chr6 41905172 41905466 -147374088 - AluY SINE Alu 0 311 1 1907 147 54 78 chr6 41905857 41906355 -147373199 + LTR19A LTR ERV1 1 486 0 1630 156 99 6 chr6 41907548 41907862 -147371692 + MER61A LTR ERV1 1 343 0 2093 97 17 13 chr6 41907902 41908200 -147371354 - THE1B LTR MaLR -65 299 1 603 257 109 43 chr6 41908202 41908438 -147371116 + L1MB7 LINE L1 4801 5020 -1164 1009 156 83 5 chr6 41908438 41908643 -147370911 - MER58A DNA MER1_type -3 221 1 603 257 109 43 chr6 41908643 41909457 -147370097 + L1MB7 LINE L1 5020 5907 -277 21 0 0 0 chr6 41909457 41909478 -147370076 + AT_rich Low_complexity Low_complexity 1 21 0 300 256 154 26 chr6 41909693 41909810 -147369744 - HAL1 LINE L1 -1168 1339 1208 40 0 0 0 chr6 41911177 41911217 -147368337 + AT_rich Low_complexity Low_complexity 1 40 0 704 258 91 62 chr6 41912348 41912895 -147366659 - L1MCa LINE L1 -5030 1396 834 1105 106 12 0 chr6 41912909 41913070 -147366484 - AluSg/x SINE Alu 0 312 150 1808 174 16 47 chr6 41913139 41913525 -147366029 - MLT1A2 LTR MaLR 0 374 1 1799 247 39 10 chr6 41913525 41913934 -147365620 - MLT1A2-int LTR MaLR 0 1735 1315 344 229 0 14 chr6 41914103 41914173 -147365381 - MLT1A2-int LTR MaLR -992 743 675 349 215 0 0 chr6 41914234 41914299 -147365255 - MLT1A2-int LTR MaLR -488 883 819 2171 231 65 42 chr6 41914304 41914940 -147364614 - MLT1A2-int LTR MaLR -1081 654 5 1476 194 79 25 chr6 41914944 41915299 -147364255 - MLT1A2 LTR MaLR 0 374 1 43962 43 1 0 chr6 41916312 41922460 -147357094 + L1PA4 LINE L1 3 6152 -3 24 67 0 0 chr6 41922572 41922617 -147356937 + AT_rich Low_complexity Low_complexity 1 45 0 241 317 84 14 chr6 41923079 41923221 -147356333 - L1MC/D LINE L1 -301 5820 5684 5584 101 8 2 chr6 41924204 41925038 -147354516 - L1PA7 LINE L1 -2262 3884 3046 10208 94 26 9 chr6 41925038 41927254 -147352300 + L1PA7 LINE L1 3915 6149 -5 24 0 0 0 chr6 41927823 41927847 -147351707 + AT_rich Low_complexity Low_complexity 1 24 0 247 218 39 39 chr6 41927944 41928022 -147351532 + MIR SINE MIR 53 130 -132 995 153 47 6 chr6 41928406 41928576 -147350978 + AluSg/x SINE Alu 133 309 -3 210 169 46 15 chr6 41929159 41929224 -147350330 + CT-rich Low_complexity Low_complexity 4 70 0 311 0 26 0 chr6 41929909 41929948 -147349606 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 61 7 17 chr6 41929950 41930246 -147349308 - AluY SINE Alu -18 293 1 310 128 8 56 chr6 41931074 41931199 -147348355 + (TA)n Simple_repeat Simple_repeat 2 120 0 180 277 117 109 chr6 41931466 41931603 -147347951 - L2 LINE L2 -556 2758 2621 604 280 20 35 chr6 41932208 41932432 -147347122 - MIR SINE MIR 0 262 42 346 163 12 12 chr6 41934521 41934601 -147344953 + GA-rich Low_complexity Low_complexity 4 83 0 30 27 0 0 chr6 41935397 41935434 -147344120 + AT_rich Low_complexity Low_complexity 1 37 0 4996 32 2 5 chr6 41935453 41936054 -147343500 - L1PA4 LINE L1 0 6155 5557 226 310 0 0 chr6 41936686 41936757 -147342797 + GA-rich Low_complexity Low_complexity 1 71 0 1048 96 0 9 chr6 41937487 41937716 -147341838 - L1PA10 LINE L1 -622 5546 5199 4335 89 17 0 chr6 41937716 41938314 -147341240 + L1PA10 LINE L1 5556 6163 -5 2133 123 0 0 chr6 41938334 41938626 -147340928 + AluSg SINE Alu 1 292 -18 1363 236 10 3 chr6 41938790 41939087 -147340467 + MER21-int LTR ERV1 187 485 -3706 2497 120 13 11 chr6 41939087 41939461 -147340093 - THE1C LTR MaLR 0 375 1 7537 107 21 10 chr6 41939461 41940559 -147338995 - THE1C-int LTR MaLR 0 1580 471 1176 186 34 17 chr6 41940564 41940801 -147338753 + MER21-int LTR ERV1 3727 3967 -224 23 0 0 0 chr6 41941426 41941449 -147338105 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 41942848 41942870 -147336684 + AT_rich Low_complexity Low_complexity 1 22 0 319 348 11 11 chr6 41942995 41943173 -147336381 + CT-rich Low_complexity Low_complexity 2 179 0 430 290 27 71 chr6 41943185 41943409 -147336145 + MIR SINE MIR 49 262 0 293 110 77 0 chr6 41945197 41945288 -147334266 + (TA)n Simple_repeat Simple_repeat 1 98 0 1040 323 18 46 chr6 41945306 41945740 -147333814 - LTR16A LTR ERVL -11 439 18 1297 43 6 0 chr6 41945795 41945957 -147333597 + L1PA5 LINE L1 5983 6145 -9 412 328 71 16 chr6 41946282 41946465 -147333089 - ERVL LTR ERVL -826 4938 4746 1109 354 35 36 chr6 41946948 41947880 -147331674 - ERVL LTR ERVL -1555 4209 3279 1880 330 34 10 chr6 41947990 41948704 -147330850 - ERVL LTR ERVL -1954 3042 2312 198 167 0 0 chr6 41948800 41948836 -147330718 + (TA)n Simple_repeat Simple_repeat 2 37 0 1727 181 3 23 chr6 41948977 41949276 -147330278 - AluJb SINE Alu -19 293 1 22 56 0 0 chr6 41949433 41949469 -147330085 + AT_rich Low_complexity Low_complexity 1 36 0 2053 104 10 17 chr6 41949572 41949869 -147329685 + AluSp SINE Alu 1 295 -18 1761 166 0 3 chr6 41949922 41950234 -147329320 + AluJb SINE Alu 1 311 0 24 32 0 0 chr6 41950274 41950305 -147329249 + AT_rich Low_complexity Low_complexity 1 31 0 233 228 18 0 chr6 41950691 41950748 -147328806 + L1MB8 LINE L1 5851 5908 -213 1331 180 51 0 chr6 41950750 41951044 -147328510 + L1MB4 LINE L1 5866 6174 -6 488 121 0 0 chr6 41951062 41951145 -147328409 + L1MB8 LINE L1 6093 6175 -3 278 297 0 69 chr6 41952598 41952699 -147326855 - MIR SINE MIR 0 262 169 4308 74 16 6 chr6 41952722 41953679 -147325875 + L1P3 LINE L1 4762 5722 -432 269 56 0 0 chr6 41953665 41953701 -147325853 - L1P4 LINE L1 -585 5576 5541 * 685 190 73 0 chr6 41953750 41953887 -147325667 + MER52A LTR ERV1 1609 1755 0 1348 221 61 0 chr6 41953887 41954263 -147325291 + L1MD3 LINE L1 7582 7980 -15 567 42 0 0 chr6 41954390 41954462 -147325092 + L1P LINE L1 4243 4314 -1832 795 353 22 18 chr6 41954463 41954964 -147324590 + L1PA13 LINE L1 84 586 -6201 1080 230 4 0 chr6 41955200 41955457 -147324097 + L1P LINE L1 3681 3938 -2208 6828 182 56 34 chr6 41955490 41957026 -147322528 - MER52A LTR ERV1 -185 1570 1 691 206 14 0 chr6 41957026 41957167 -147322387 - L1MD3 LINE L1 -410 7585 7443 319 247 21 21 chr6 41957204 41957297 -147322257 - MLT1F1 LTR MaLR -442 125 33 3786 253 32 59 chr6 41957308 41958924 -147320630 - L1MC3 LINE L1 -717 7068 5497 384 247 33 13 chr6 41958925 41959075 -147320479 + MER58 DNA MER1_type 2253 2405 -15 4599 48 5 9 chr6 41959422 41959999 -147319555 + L1PA6 LINE L1 5573 6147 -7 2129 134 0 0 chr6 41960113 41960412 -147319142 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 41960703 41960723 -147318831 + (T)n Simple_repeat Simple_repeat 1 20 0 4039 165 29 8 chr6 41960885 41961672 -147317882 + L1PB4 LINE L1 5346 6149 -7 2124 109 7 10 chr6 41961805 41962099 -147317455 - AluSq SINE Alu -20 293 1 7363 187 16 17 chr6 41962950 41965332 -147314222 - L1PA15 LINE L1 -6 6159 3777 1132 199 133 7 chr6 41965378 41965649 -147313905 + MLT1D LTR MaLR 29 333 -172 256 89 0 0 chr6 41965678 41965723 -147313831 - L1 LINE L1 -2368 3778 3734 511 245 98 53 chr6 41966035 41966259 -147313295 + L1MC4 LINE L1 6855 7094 -948 345 47 0 0 chr6 41966259 41966302 -147313252 + (CA)n Simple_repeat Simple_repeat 2 44 0 511 245 98 53 chr6 41966302 41966342 -147313212 + L1MC4 LINE L1 7094 7131 -911 1011 232 154 44 chr6 41966343 41966726 -147312828 - MLT1D LTR MaLR -2 503 79 5313 160 2 10 chr6 41966729 41967721 -147311833 + L1P LINE L1 1055 2038 -4108 6828 66 7 2 chr6 41967721 41969327 -147310227 + L1PA7 LINE L1 4533 6148 -6 1115 250 17 23 chr6 41969424 41969772 -147309782 + L1MC4 LINE L1 7128 7473 -569 3447 112 8 6 chr6 41970292 41970802 -147308752 - MER9 LTR ERVK 0 511 1 436 251 42 74 chr6 41970971 41971186 -147308368 + L1M3e LINE L1 1093 1300 -5730 660 168 18 48 chr6 41971198 41971365 -147308189 + L1MA8 LINE L1 5447 5608 -692 953 101 0 0 chr6 41971365 41971484 -147308070 + AluSx SINE Alu 1 119 -194 6921 73 3 0 chr6 41971487 41972780 -147306774 + L1PA8 LINE L1 4875 6170 -2 387 0 0 0 chr6 41972857 41972900 -147306654 + (CA)n Simple_repeat Simple_repeat 2 44 0 1405 122 0 0 chr6 41972901 41973084 -147306470 + AluSx SINE Alu 102 287 -23 207 0 0 0 chr6 41973084 41973107 -147306447 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1405 122 0 0 chr6 41973107 41973119 -147306435 + AluSx SINE Alu 286 297 -13 2913 173 30 15 chr6 41973119 41973774 -147305780 + L1MA8 LINE L1 5606 6270 -21 200 234 21 0 chr6 41975307 41975354 -147304200 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 1713 257 72 14 chr6 41976386 41977237 -147302317 + L1MC4 LINE L1 6814 7840 -86 * 25034 38 5 1 chr6 41977236 41981236 -147298318 + L1PA4 LINE L1 2131 6147 -8 343 261 120 11 chr6 41981542 41981602 -147297952 + L1MC4 LINE L1 7839 7891 -151 675 30 20 10 chr6 41981602 41981701 -147297853 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 343 261 120 11 chr6 41981701 41981824 -147297730 + L1MC4 LINE L1 7891 8042 0 26 30 0 0 chr6 41981843 41981876 -147297678 + AT_rich Low_complexity Low_complexity 1 33 0 1273 107 0 6 chr6 41982188 41982356 -147297198 - AluYb8 SINE Alu -151 167 1 243 143 0 0 chr6 41982370 41982412 -147297142 - U5 snRNA snRNA -72 44 3 2170 99 0 17 chr6 41985492 41985785 -147293769 + AluSx SINE Alu 1 288 -24 985 130 11 0 chr6 41986518 41986695 -147292859 - L1MA7 LINE L1 -4 6287 6109 723 101 63 38 chr6 41987566 41987724 -147291830 - L1MA7 LINE L1 0 6291 6130 1566 127 3 108 chr6 41987731 41988093 -147291461 - L1MA7 LINE L1 -288 6003 5680 4242 177 51 15 chr6 41988093 41988957 -147290597 - MER54A LTR ERVL 0 901 7 1569 114 14 14 chr6 41988964 41989184 -147290370 - AluSg/x SINE Alu -16 294 75 3842 181 42 18 chr6 41989184 41990326 -147289228 - L1MA7 LINE L1 -609 5682 4520 3420 190 42 18 chr6 41990323 41991262 -147288292 - L1MA7 LINE L1 -2611 3535 2575 * 2338 110 28 5 chr6 41991258 41991648 -147287906 + L1P4 LINE L1 5383 5781 -385 * 12513 164 56 55 chr6 41991677 41994232 -147285322 - MER109 Unknown Unknown -67 2365 877 2145 31 4 0 chr6 41994232 41994489 -147285065 + L1PA2 LINE L1 5897 6155 0 12513 164 56 55 chr6 41994489 41995367 -147284187 - MER109 Unknown Unknown -1555 877 1 9838 145 24 19 chr6 41995384 41997542 -147282012 + L1P3 LINE L1 11 2185 -4276 2464 142 108 14 chr6 41997542 41998128 -147281426 + MER109 Unknown Unknown 1732 2372 -60 3080 122 33 19 chr6 41998150 41998778 -147280776 - L1P4 LINE L1 -385 5781 5148 4261 206 53 14 chr6 41999882 42001093 -147278461 + L1MEc LINE L1 2294 3527 -2688 804 133 20 0 chr6 42001091 42001242 -147278312 + L1P LINE L1 3183 3336 -2810 * 2562 65 0 6 chr6 42001237 42001593 -147277961 - L1P LINE L1 -2448 3698 3345 6833 67 12 0 chr6 42001593 42002813 -147276741 + L1PA6 LINE L1 4917 6146 -8 1465 288 51 14 chr6 42003082 42003666 -147275888 - L1ME2 LINE L1 -30 6134 5529 266 175 52 21 chr6 42003783 42003880 -147275674 + (TA)n Simple_repeat Simple_repeat 1 100 0 341 191 0 0 chr6 42003969 42004032 -147275522 + L1PA15 LINE L1 2950 3012 -4553 990 209 69 28 chr6 42004073 42004437 -147275117 + L1PA15 LINE L1 3119 3497 -4068 201 229 0 0 chr6 42004437 42004485 -147275069 + G-rich Low_complexity Low_complexity 4 51 0 677 198 32 11 chr6 42004489 42004676 -147274878 + L1PA15 LINE L1 3462 3652 -3913 4899 154 36 3 chr6 42004689 42005926 -147273628 + L1PA15 LINE L1 6319 7584 0 694 160 0 8 chr6 42005926 42006048 -147273506 + L1PA15 LINE L1 6023 6146 -19 341 20 0 39 chr6 42006048 42006140 -147273414 + L1PA6 LINE L1 6106 6195 0 2370 178 32 36 chr6 42006168 42006730 -147272824 + L1MA4 LINE L1 5733 6292 -8 21 0 0 0 chr6 42006730 42006751 -147272803 + AT_rich Low_complexity Low_complexity 1 21 0 2500 255 11 54 chr6 42006925 42007671 -147271883 + L1M4 LINE L1 342 1055 -5487 5884 99 30 2 chr6 42007671 42008527 -147271027 + L1PA13 LINE L1 5284 6163 0 1405 223 40 38 chr6 42008538 42009010 -147270544 + L1M4 LINE L1 1041 1513 -5029 4037 185 25 15 chr6 42009011 42009864 -147269690 + L1MC2 LINE L1 5476 6336 -8 2500 251 21 14 chr6 42009864 42010672 -147268882 + L1M4 LINE L1 2674 3487 -3157 220 194 0 0 chr6 42010739 42010775 -147268779 + (TG)n Simple_repeat Simple_repeat 2 37 0 298 327 27 0 chr6 42010969 42011079 -147268475 - L2 LINE L2 -280 3033 2921 843 253 89 104 chr6 42011118 42011635 -147267919 - LTR33 LTR ERVL -12 509 1 912 140 7 0 chr6 42011734 42011870 -147267684 + AluSg/x SINE Alu 156 292 -20 2845 105 117 36 chr6 42013349 42013855 -147265699 - MER41B LTR ERV1 -88 547 1 4945 115 23 4 chr6 42013855 42014587 -147264967 - MER41B-int LTR ERV1 -2 5944 5199 5171 120 11 8 chr6 42014592 42015376 -147264178 + MER41-int LTR ERV1 4309 5095 -851 24 0 0 0 chr6 42015704 42015728 -147263826 + AT_rich Low_complexity Low_complexity 1 24 0 6772 138 47 9 chr6 42015950 42017136 -147262418 + Tigger3b DNA MER2_type 1 1231 0 282 386 9 0 chr6 42018614 42018728 -147260826 + MER5A DNA MER1_type 72 186 -3 192 343 40 10 chr6 42018748 42018847 -147260707 - MIR SINE MIR -73 189 88 33 0 0 0 chr6 42020523 42020556 -147258998 + AT_rich Low_complexity Low_complexity 1 33 0 2630 58 0 0 chr6 42022132 42022459 -147257095 + L1PA6 LINE L1 5820 6146 -8 358 331 127 0 chr6 42022670 42022851 -147256703 - MIR SINE MIR -6 256 53 2006 154 0 3 chr6 42023519 42023824 -147255730 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr6 42024907 42024928 -147254626 + AT_rich Low_complexity Low_complexity 1 21 0 1827 154 36 11 chr6 42025344 42025702 -147253852 - L1MA6 LINE L1 0 6300 5934 428 315 127 17 chr6 42026101 42026409 -147253145 - L1PA13 LINE L1 -6446 392 12 4502 235 102 91 chr6 42026446 42026820 -147252734 - L1MC3 LINE L1 -17 7768 7400 8883 177 23 28 chr6 42026820 42028584 -147250970 - MER52A LTR ERV1 0 1755 1 4502 235 102 91 chr6 42028584 42028762 -147250792 - L1MC3 LINE L1 -385 7400 7225 300 280 21 21 chr6 42028762 42028855 -147250699 - MLT1F1 LTR MaLR -442 125 33 4502 235 102 91 chr6 42028855 42030485 -147249069 - L1MC3 LINE L1 -560 7225 5468 361 270 18 0 chr6 42030496 42030607 -147248947 + MER58 DNA MER1_type 2293 2405 -15 2127 128 3 0 chr6 42031061 42031359 -147248195 + AluSx SINE Alu 1 299 -13 261 0 0 0 chr6 42031814 42031843 -147247711 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2212 89 0 0 chr6 42031846 42032126 -147247428 - AluY SINE Alu -31 280 1 4035 160 53 17 chr6 42032153 42032929 -147246625 + L1PB4 LINE L1 5346 6149 -7 2090 99 7 14 chr6 42033065 42033359 -147246195 - AluSq SINE Alu -16 297 6 7643 190 16 8 chr6 42034215 42036584 -147242970 - L1PA15 LINE L1 -6 6159 3777 840 210 10 29 chr6 42036630 42036900 -147242654 + MLT1D LTR MaLR 29 333 -172 261 89 0 0 chr6 42036929 42036974 -147242580 - L1 LINE L1 -2368 3778 3734 494 259 84 27 chr6 42037286 42037338 -147242216 + L1MC4 LINE L1 6855 6903 -1139 1836 70 62 4 chr6 42037338 42037579 -147241975 - AluY SINE Alu -13 298 44 494 259 84 27 chr6 42037579 42037748 -147241806 + L1MC4 LINE L1 6903 7096 -946 192 77 0 0 chr6 42037748 42037774 -147241780 + (CA)n Simple_repeat Simple_repeat 1 26 0 494 259 84 27 chr6 42037774 42037813 -147241741 + L1MC4 LINE L1 7096 7131 -911 1612 231 154 16 chr6 42037814 42038256 -147241298 - MLT1D LTR MaLR -2 503 1 345 176 0 0 chr6 42038258 42038326 -147241228 + L1MC4 LINE L1 7128 7195 -847 320 291 25 0 chr6 42038777 42038856 -147240698 + MIR SINE MIR 6 86 -176 364 329 94 68 chr6 42038943 42038977 -147240577 + MLT1K LTR MaLR 104 136 -452 1172 274 59 16 chr6 42038977 42039400 -147240154 + LTR47B LTR ERVL 1 441 -2 364 329 94 68 chr6 42039400 42039791 -147239763 + MLT1K LTR MaLR 136 540 -48 461 203 47 8 chr6 42039804 42039932 -147239622 + L1MC4 LINE L1 7538 7670 -372 330 228 13 87 chr6 42039984 42040133 -147239421 + L1MC4 LINE L1 7884 8021 -21 230 176 0 0 chr6 42041149 42041183 -147238371 + L1M3e LINE L1 4 37 -6993 * 504 203 322 37 chr6 42041168 42041410 -147238144 + L1M3e LINE L1 991 1301 -5729 * 841 165 0 45 chr6 42041407 42041583 -147237971 + L1MA9 LINE L1 5440 5607 -684 1942 143 3 0 chr6 42041585 42041871 -147237683 + AluSx SINE Alu 2 288 -24 6705 13 0 0 chr6 42041891 42042717 -147236837 + L1PA2 LINE L1 5388 6213 0 2908 164 57 26 chr6 42042717 42043400 -147236154 + L1MA9 LINE L1 5604 6307 -5 22 0 0 0 chr6 42043760 42043782 -147235772 + AT_rich Low_complexity Low_complexity 1 22 0 2404 246 119 40 chr6 42046008 42046944 -147232610 + L1MC4 LINE L1 6899 7929 -113 560 40 13 0 chr6 42046944 42047019 -147232535 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2404 246 119 40 chr6 42047019 42047143 -147232411 + L1MC4 LINE L1 7929 8042 0 32 26 0 0 chr6 42047148 42047187 -147232367 + AT_rich Low_complexity Low_complexity 1 39 0 701 74 0 1 chr6 42049094 42049194 -147230360 + L1MA3 LINE L1 6137 6249 -56 837 160 0 0 chr6 42049201 42049332 -147230222 + FLAM_C SINE Alu 1 131 -12 390 85 0 0 chr6 42049347 42049406 -147230148 + L1MA1 LINE L1 6244 6302 0 26 30 0 0 chr6 42050922 42050955 -147228599 + AT_rich Low_complexity Low_complexity 1 33 0 32 43 0 0 chr6 42051134 42051180 -147228374 + AT_rich Low_complexity Low_complexity 1 46 0 2614 84 13 5 chr6 42051707 42052088 -147227466 + L1PA6 LINE L1 5771 6154 0 836 250 23 11 chr6 42052120 42052384 -147227170 + L1ME1 LINE L1 4378 4644 -1502 2477 238 56 27 chr6 42052426 42053289 -147226265 + L1ME1 LINE L1 5225 6112 -54 406 292 17 8 chr6 42053312 42053432 -147226122 + MIR SINE MIR 47 167 -95 298 189 0 40 chr6 42053641 42053715 -147225839 + L1ME2 LINE L1 6093 6163 -1 3222 139 65 58 chr6 42053837 42054004 -147225550 + L1MA9 LINE L1 5616 5780 -532 213 39 0 0 chr6 42054004 42054030 -147225524 + (CA)n Simple_repeat Simple_repeat 1 26 0 3222 139 65 58 chr6 42054030 42054194 -147225360 + L1MA9 LINE L1 5780 5941 -371 2042 118 3 0 chr6 42054194 42054481 -147225073 + AluSx SINE Alu 10 297 -15 3222 139 65 58 chr6 42054481 42054840 -147224714 + L1MA9 LINE L1 5941 6312 0 247 159 0 0 chr6 42055059 42055103 -147224451 - U5 snRNA snRNA -72 44 1 31 58 0 0 chr6 42057197 42057249 -147222305 + AT_rich Low_complexity Low_complexity 1 52 0 961 167 11 0 chr6 42058720 42058900 -147220654 - L1MA7 LINE L1 -5 6286 6105 1679 150 11 83 chr6 42059740 42060114 -147219440 - L1MA7 LINE L1 -265 6026 5680 4537 178 53 13 chr6 42060114 42060983 -147218571 - MER54A LTR ERVL 0 901 7 4085 185 31 17 chr6 42060985 42062124 -147217430 - L1MA7 LINE L1 -612 5679 4521 5234 206 48 6 chr6 42062129 42063411 -147216143 - L1MA7 LINE L1 -2610 3536 2202 229 26 53 0 chr6 42063927 42063965 -147215589 + (TA)n Simple_repeat Simple_repeat 2 41 0 525 91 13 13 chr6 42063984 42064061 -147215493 + MSTB1 LTR MaLR 348 424 -8 963 248 66 23 chr6 42064306 42064608 -147214946 + L2 LINE L2 2997 3311 -2 3009 48 13 0 chr6 42064808 42065182 -147214372 + L1PA8 LINE L1 5786 6164 -8 26 50 0 0 chr6 42065182 42065222 -147214332 + AT_rich Low_complexity Low_complexity 1 40 0 4985 78 19 0 chr6 42065494 42066165 -147213389 + L1PA8 LINE L1 5476 6159 -13 1847 92 64 21 chr6 42066560 42066843 -147212711 - AluSq SINE Alu -18 295 1 298 291 183 56 chr6 42068547 42068760 -147210794 - MIR SINE MIR -11 251 12 376 298 23 69 chr6 42068773 42068991 -147210563 - L1MC/D LINE L1 -2337 5471 5264 714 154 0 0 chr6 42069089 42069212 -147210342 - L1MA8 LINE L1 -11 6280 6158 2150 112 3 10 chr6 42071693 42072007 -147207547 + AluSx SINE Alu 1 312 0 2102 133 0 3 chr6 42072405 42072707 -147206847 - AluSq SINE Alu -12 301 1 24 0 0 0 chr6 42073252 42073276 -147206278 + AT_rich Low_complexity Low_complexity 1 24 0 349 82 36 36 chr6 42073306 42073416 -147206138 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 261 283 96 86 chr6 42073790 42073868 -147205686 - L1ME LINE L1 -237 5884 5808 2619 43 0 0 chr6 42073868 42074173 -147205381 + AluY SINE Alu 1 305 -6 261 283 96 86 chr6 42074173 42074593 -147204961 - L1ME LINE L1 -313 5808 5381 638 304 55 13 chr6 42074603 42074840 -147204714 + MLT1I LTR MaLR 10 256 -153 2489 229 11 25 chr6 42074937 42075509 -147204045 + L1PA13 LINE L1 1 564 -6223 2233 152 22 12 chr6 42075509 42075910 -147203644 + L1PA15 LINE L1 5757 6161 -4 1462 191 37 13 chr6 42075932 42076297 -147203257 + AluJb SINE Alu 2 373 0 613 192 17 23 chr6 42076298 42076475 -147203079 + GA-rich Low_complexity Low_complexity 3 178 0 573 319 60 4 chr6 42076686 42076921 -147202633 + MLT1I LTR MaLR 138 385 -24 26 0 0 0 chr6 42076933 42076959 -147202595 + AT_rich Low_complexity Low_complexity 1 26 0 278 248 56 48 chr6 42077033 42077158 -147202396 + L1ME4a LINE L1 5946 6071 -50 25 83 0 0 chr6 42077303 42077363 -147202191 + AT_rich Low_complexity Low_complexity 1 60 0 27 0 0 0 chr6 42077430 42077457 -147202097 + AT_rich Low_complexity Low_complexity 1 27 0 589 310 137 35 chr6 42077694 42078036 -147201518 - L2 LINE L2 -16 3297 2921 456 273 80 17 chr6 42078132 42078444 -147201110 - L1MC4 LINE L1 -32 8010 7691 727 254 235 16 chr6 42078455 42078778 -147200776 - L1MC4 LINE L1 -612 7430 7037 2095 77 17 0 chr6 42078792 42079079 -147200475 - L1PA7 LINE L1 -3 6151 5860 22 0 0 0 chr6 42079204 42079226 -147200328 + AT_rich Low_complexity Low_complexity 1 22 0 400 95 16 0 chr6 42079339 42079402 -147200152 + L1MA9 LINE L1 6227 6290 -22 2110 101 41 9 chr6 42080210 42080548 -147199006 + L1PA10 LINE L1 5820 6168 0 333 137 0 0 chr6 42083782 42083833 -147195721 + MER66A LTR ERV1 287 337 -141 304 274 24 0 chr6 42084375 42084459 -147195095 + MER112 DNA MER1_type 1 86 -174 215 273 61 40 chr6 42087286 42087385 -147192169 + L2 LINE L2 3213 3313 0 6239 132 10 18 chr6 42087515 42087877 -147191677 - L1PB1 LINE L1 -1 6150 5787 216 0 0 0 chr6 42087877 42087901 -147191653 + (TA)n Simple_repeat Simple_repeat 1 24 0 6239 132 10 18 chr6 42087901 42088700 -147190854 - L1PB1 LINE L1 -364 5787 5006 2323 91 0 0 chr6 42088700 42088997 -147190557 - AluY SINE Alu -14 297 1 6239 132 10 18 chr6 42088997 42089388 -147190166 - L1PB1 LINE L1 -1145 5006 4613 625 253 0 18 chr6 42089393 42089559 -147189995 - L1MC/D LINE L1 -2415 5627 5465 36 62 0 0 chr6 42089596 42089660 -147189894 + AT_rich Low_complexity Low_complexity 1 64 0 351 265 31 0 chr6 42089660 42089758 -147189796 + MER58 DNA MER1_type 2320 2420 0 10924 30 0 15 chr6 42089915 42091326 -147188228 + L1PA4 LINE L1 4077 5469 -686 2471 7 80 0 chr6 42091326 42091614 -147187940 + AluY SINE Alu 1 311 0 10924 30 0 15 chr6 42091614 42092291 -147187263 + L1PA4 LINE L1 5469 6155 0 686 196 88 14 chr6 42092614 42092762 -147186792 + MLT1A1 LTR MaLR 156 314 -51 21 0 0 0 chr6 42092939 42092960 -147186594 + AT_rich Low_complexity Low_complexity 1 21 0 1509 184 23 30 chr6 42094389 42094688 -147184866 + AluJo SINE Alu 3 299 -13 1408 170 66 111 chr6 42094720 42095162 -147184392 + L1MA8 LINE L1 3913 4334 -1812 22302 93 21 14 chr6 42095167 42099250 -147180304 + L1PA8 LINE L1 2040 6151 -21 5199 153 60 21 chr6 42099276 42101166 -147178388 + L1MA8 LINE L1 4336 6288 -3 675 12 0 0 chr6 42101173 42101255 -147178299 - L1PA2 LINE L1 0 6155 6074 2727 208 26 12 chr6 42101255 42101900 -147177654 + L1MA9 LINE L1 4317 4970 -1176 2442 164 23 18 chr6 42101900 42102911 -147176643 + L1MA9 LINE L1 5230 6306 -6 6091 208 29 9 chr6 42102992 42104761 -147174793 - L1PA16 LINE L1 -3 6163 4363 369 0 0 0 chr6 42104761 42104802 -147174752 + (TG)n Simple_repeat Simple_repeat 2 42 0 6091 208 29 9 chr6 42104802 42105291 -147174263 - L1PA16 LINE L1 -1803 4363 3885 767 206 36 36 chr6 42105492 42105657 -147173897 + FRAM SINE Alu 11 175 -1 187 274 20 0 chr6 42105877 42105928 -147173626 - L2 LINE L2 -10 3262 3211 242 212 30 30 chr6 42106190 42106256 -147173298 + L2 LINE L2 3179 3244 -69 575 314 137 54 chr6 42106342 42106780 -147172774 - L2 LINE L2 -106 3207 2807 2181 76 0 50 chr6 42106780 42107097 -147172457 - AluSx SINE Alu -11 301 1 575 314 137 54 chr6 42107097 42107593 -147171961 - L2 LINE L2 -506 2807 2155 230 141 14 42 chr6 42108338 42108409 -147171145 + (TA)n Simple_repeat Simple_repeat 1 69 0 804 257 51 24 chr6 42108526 42108779 -147170775 - MIR SINE MIR -2 260 1 1170 146 0 6 chr6 42110890 42111068 -147168486 - AluJo SINE Alu -16 296 120 1110 182 8 68 chr6 42111089 42111353 -147168201 - L1MA10 LINE L1 -2 6332 6085 361 369 127 15 chr6 42111353 42111692 -147167862 - L2 LINE L2 -557 2757 2381 2357 129 91 12 chr6 42111716 42112136 -147167418 - L1MA7 LINE L1 -1 6290 5838 271 214 0 29 chr6 42112542 42112645 -147166909 + CT-rich Low_complexity Low_complexity 3 102 0 688 296 68 26 chr6 42114745 42115056 -147164498 - Charlie2 DNA MER1_type -2458 324 1 2373 82 0 0 chr6 42116548 42116840 -147162714 - AluSx SINE Alu -20 292 1 2220 73 10 30 chr6 42118332 42118635 -147160919 + AluY SINE Alu 1 297 -14 6309 119 13 1 chr6 42119639 42120634 -147158920 + L1PA15 LINE L1 5158 6163 -2 23 33 0 0 chr6 42120806 42120836 -147158718 + AT_rich Low_complexity Low_complexity 1 30 0 1727 169 3 10 chr6 42121014 42121310 -147158244 + AluJb SINE Alu 1 294 -18 24 32 0 0 chr6 42121508 42121539 -147158015 + AT_rich Low_complexity Low_complexity 1 31 0 2521 158 69 7 chr6 42121549 42122102 -147157452 - MER109 Unknown Unknown -156 2276 1603 263 217 76 54 chr6 42122076 42122168 -147157386 - MER109 Unknown Unknown -1470 962 869 * 6837 151 33 32 chr6 42122245 42123538 -147156016 + L1MA8 LINE L1 3990 5309 -982 2118 148 0 0 chr6 42123538 42123848 -147155706 + AluSx SINE Alu 1 310 -2 6837 151 33 32 chr6 42123848 42124544 -147155010 + L1MA8 LINE L1 5309 6003 -288 29 70 0 0 chr6 42124802 42124859 -147154695 + AT_rich Low_complexity Low_complexity 1 57 0 2359 91 10 3 chr6 42124886 42125194 -147154360 - AluSp SINE Alu -3 310 1 610 304 44 35 chr6 42126015 42126242 -147153312 - MIR SINE MIR -15 247 19 1803 123 8 4 chr6 42126242 42126503 -147153051 - AluSg1 SINE Alu -47 262 1 250 295 16 0 chr6 42126585 42126646 -147152908 + L2 LINE L2 3189 3250 -22 408 333 12 19 chr6 42126818 42126980 -147152574 - MIR3 SINE MIR -6 202 42 2096 128 14 0 chr6 42128292 42128588 -147150966 + AluSp SINE Alu 1 300 -13 183 206 0 0 chr6 42129897 42129931 -147149623 - MIR SINE MIR -84 124 91 2230 88 10 3 chr6 42131490 42131795 -147147759 + AluSc SINE Alu 1 307 -2 337 210 50 20 chr6 42132004 42132104 -147147450 + MIR SINE MIR 57 159 -103 457 88 15 0 chr6 42132457 42132525 -147147029 - MER41A LTR ERV1 -87 467 399 351 250 167 0 chr6 42132532 42132616 -147146938 + MER115 DNA AcHobo 50 147 -546 2082 144 0 0 chr6 42133006 42133312 -147146242 + AluSx SINE Alu 1 306 -6 729 172 0 47 chr6 42133474 42133602 -147145952 - FLAM_C SINE Alu -11 122 1 2302 67 0 0 chr6 42134004 42134286 -147145268 + AluSg SINE Alu 6 287 -23 2516 44 0 10 chr6 42134305 42134602 -147144952 - AluY SINE Alu -17 294 1 2117 110 13 3 chr6 42134620 42134919 -147144635 + AluSx SINE Alu 1 302 -10 309 201 82 90 chr6 42134964 42135055 -147144499 + L2 LINE L2 1879 1970 -1344 2326 154 77 33 chr6 42135055 42135484 -147144070 + MER83 LTR ERV1 1 448 0 309 201 82 90 chr6 42135484 42135526 -147144028 + L2 LINE L2 1970 2011 -1303 1890 136 36 7 chr6 42135759 42136060 -147143494 + AluJb SINE Alu 3 312 0 438 277 138 64 chr6 42136103 42136558 -147142996 + L1MC4a LINE L1 4903 5391 -755 548 309 93 50 chr6 42136561 42136698 -147142856 + L1MC4a LINE L1 5438 5568 -2240 2270 106 3 6 chr6 42136698 42137009 -147142545 + AluSp SINE Alu 1 310 -3 548 309 93 50 chr6 42137009 42137247 -147142307 + L1MC4a LINE L1 5568 5829 -1979 692 122 0 9 chr6 42137249 42137364 -147142190 + (GAA)n Simple_repeat Simple_repeat 1 114 0 662 286 98 19 chr6 42137403 42137669 -147141885 - L2 LINE L2 0 3313 3027 3513 164 64 22 chr6 42137711 42137978 -147141576 + L1MD2 LINE L1 5639 5893 -466 1751 166 3 24 chr6 42137978 42138312 -147141242 - AluSx SINE Alu 0 328 1 3513 164 64 22 chr6 42138312 42138665 -147140889 + L1MD2 LINE L1 5893 6294 -65 2069 152 0 0 chr6 42138665 42138975 -147140579 - AluSx SINE Alu -2 310 1 3513 164 64 22 chr6 42138975 42139043 -147140511 + L1MD2 LINE L1 6294 6358 -1 279 238 29 48 chr6 42139140 42139245 -147140309 - MLT1L LTR MaLR -379 236 134 259 268 0 0 chr6 42139457 42139513 -147140041 - L2 LINE L2 -73 3199 3144 1146 138 0 6 chr6 42139606 42139766 -147139788 + FRAM SINE Alu 1 158 -18 2282 113 3 0 chr6 42139766 42140066 -147139488 + AluSp SINE Alu 1 301 -12 341 278 24 39 chr6 42140088 42140237 -147139317 + MLT1H1 LTR MaLR 71 242 -307 1435 157 69 91 chr6 42140257 42140576 -147138978 - MLT1B LTR MaLR -2 388 77 2034 130 7 0 chr6 42140576 42140861 -147138693 + AluSx SINE Alu 8 294 -18 1435 157 69 91 chr6 42140861 42140916 -147138638 - MLT1B LTR MaLR -313 77 22 349 236 150 29 chr6 42141011 42141151 -147138403 + MLT1H1 LTR MaLR 298 454 -101 211 233 0 0 chr6 42141320 42141363 -147138191 + L3 LINE CR1 1179 1221 -356 1010 137 31 97 chr6 42141533 42141575 -147137979 - MSTA LTR MaLR 0 428 385 2060 125 0 14 chr6 42141575 42141889 -147137665 + AluSx SINE Alu 1 312 0 1010 137 31 97 chr6 42141889 42142003 -147137551 - MSTA LTR MaLR -43 385 289 2128 117 7 3 chr6 42142003 42142310 -147137244 - AluSq SINE Alu -5 308 1 1010 137 31 97 chr6 42142310 42142379 -147137175 - MSTA LTR MaLR -139 289 217 451 132 0 121 chr6 42142384 42142475 -147137079 - MSTA LTR MaLR -348 80 1 809 233 65 49 chr6 42142544 42142789 -147136765 - L1ME3 LINE L1 -4 6158 5910 1335 204 82 29 chr6 42142802 42143145 -147136409 - L1ME3 LINE L1 -418 5744 5384 1393 142 26 71 chr6 42143156 42143423 -147136131 - AluJb SINE Alu -57 255 1 762 243 39 24 chr6 42143423 42143599 -147135955 - L1ME3 LINE L1 -760 5386 5203 2352 88 13 10 chr6 42143599 42143907 -147135647 - AluSc SINE Alu 0 309 1 762 243 39 24 chr6 42143907 42143985 -147135569 - L1ME3 LINE L1 -943 5203 5128 935 155 0 19 chr6 42144015 42144176 -147135378 - FAM SINE Alu -15 170 13 424 299 103 0 chr6 42144179 42144393 -147135161 - L1ME3 LINE L1 -1011 5135 4900 1824 112 93 11 chr6 42144511 42144643 -147134911 - AluSx SINE Alu -21 291 171 2034 109 0 30 chr6 42144643 42144945 -147134609 - AluSc SINE Alu -16 293 1 1824 112 93 11 chr6 42144945 42145081 -147134473 - AluSx SINE Alu -141 171 1 1882 107 44 4 chr6 42145481 42145753 -147133801 - AluSq SINE Alu -30 283 1 769 240 83 47 chr6 42145781 42146760 -147132794 - HAL1 LINE L1 -342 2165 1061 2176 102 24 0 chr6 42146760 42147055 -147132499 + AluSp SINE Alu 1 302 -11 769 240 83 47 chr6 42147055 42147365 -147132189 - HAL1 LINE L1 -1446 1061 764 576 9 9 217 chr6 42148246 42148352 -147131202 + tRNA-Leu-TTG tRNA tRNA 1 84 -2 708 0 0 0 chr6 42148794 42148866 -147130688 - tRNA-Gln-CAG tRNA tRNA -3 72 1 357 93 0 0 chr6 42149418 42149472 -147130082 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 759 0 0 0 chr6 42150815 42150897 -147128657 - tRNA-Leu-CTT tRNA tRNA -3 82 1 548 83 0 0 chr6 42151769 42151841 -147127713 + tRNA-Met-e tRNA tRNA 1 72 -3 661 241 95 60 chr6 42152619 42153055 -147126499 + LTR50 LTR ERVL 10 655 -130 2286 100 0 0 chr6 42153083 42153374 -147126180 - AluSx SINE Alu -21 291 1 1286 270 32 38 chr6 42153409 42153874 -147125680 - L2 LINE L2 -57 3256 2791 241 317 32 73 chr6 42153947 42154000 -147125554 - MER5A DNA MER1_type -67 122 68 2214 102 7 0 chr6 42154000 42154295 -147125259 - AluSp SINE Alu -16 297 1 241 317 32 73 chr6 42154295 42154364 -147125190 - MER5A DNA MER1_type -121 68 5 1974 154 3 3 chr6 42154596 42154908 -147124646 - AluSx SINE Alu 0 312 1 282 276 92 41 chr6 42155037 42155233 -147124321 + L2 LINE L2 2553 2758 -556 242 319 14 0 chr6 42155445 42155517 -147124037 + L2 LINE L2 2995 3067 -205 4661 145 44 60 chr6 42156110 42157552 -147122002 - pTR5 LTR ERV1 0 2438 75 2073 77 21 3 chr6 42157622 42157907 -147121647 - AluSc SINE Alu -16 293 4 680 0 0 0 chr6 42158222 42158295 -147121259 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2144 54 54 7 chr6 42158785 42159080 -147120474 + AluY SINE Alu 1 309 -2 1880 93 7 0 chr6 42159092 42159362 -147120192 + AluSx SINE Alu 5 276 -36 24 53 0 0 chr6 42159362 42159400 -147120154 + AT_rich Low_complexity Low_complexity 1 38 0 340 273 120 69 chr6 42159884 42160100 -147119454 - L2 LINE L2 -4 3309 3083 524 83 0 0 chr6 42160458 42160530 -147119024 - tRNA-Met-e tRNA tRNA -3 72 1 22 35 0 0 chr6 42160606 42160635 -147118919 + AT_rich Low_complexity Low_complexity 1 29 0 271 231 0 15 chr6 42161308 42161373 -147118181 - MER81 DNA DNA -15 99 36 2187 86 0 3 chr6 42161715 42162016 -147117538 - AluSq SINE Alu -13 300 1 2146 92 0 3 chr6 42162909 42163215 -147116339 + AluSq SINE Alu 1 305 0 999 181 93 1 chr6 42163559 42163980 -147115574 - LTR54B LTR ERV1 -2 496 8 519 129 0 21 chr6 42164152 42164245 -147115309 - AluSg/x SINE Alu -3 306 216 7245 138 108 109 chr6 42164854 42166555 -147112999 + pTR5 LTR ERV1 741 2438 0 2292 60 0 13 chr6 42167165 42167499 -147112055 - AluY SINE Alu 0 311 1 329 230 23 11 chr6 42167500 42167587 -147111967 - L2 LINE L2 -1306 2008 1921 11892 166 119 8 chr6 42167605 42169239 -147110315 + L1PB1 LINE L1 6 1990 -4873 1969 135 24 0 chr6 42169239 42169527 -147110027 + AluSx SINE Alu 1 295 -17 11892 166 119 8 chr6 42169527 42170276 -147109278 + L1PB1 LINE L1 1990 2654 -4209 2379 57 0 3 chr6 42170276 42170576 -147108978 + AluY SINE Alu 1 299 -12 14437 176 12 14 chr6 42170578 42171808 -147107746 + L1PB1 LINE L1 2998 4230 -2637 2088 127 3 3 chr6 42171808 42172116 -147107438 + AluSq SINE Alu 1 308 -5 1772 131 30 7 chr6 42172122 42172419 -147107135 + AluSx SINE Alu 1 304 -8 14437 176 12 14 chr6 42172419 42174785 -147104769 + L1PB1 LINE L1 4235 6593 -274 2013 127 7 0 chr6 42174785 42175093 -147104461 - AluSx SINE Alu -2 310 1 14437 176 12 14 chr6 42175093 42175360 -147104194 + L1PB1 LINE L1 6593 6859 -8 386 228 83 21 chr6 42175373 42175518 -147104036 - L2 LINE L2 -1355 1959 1806 2196 180 49 112 chr6 42175559 42176231 -147103323 + LTR8A LTR ERV1 30 659 -68 219 36 0 0 chr6 42176232 42176260 -147103294 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 283 132 44 187 chr6 42177661 42177752 -147101802 + LTR8A LTR ERV1 650 727 0 350 289 209 21 chr6 42177764 42177999 -147101555 - L2 LINE L2 -2236 1078 800 373 282 28 7 chr6 42178001 42178143 -147101411 - MER112 DNA MER1_type -8 252 108 1046 195 0 10 chr6 42178559 42178764 -147100790 + AluSq SINE Alu 1 203 -110 610 88 33 103 chr6 42178764 42178938 -147100616 + AluSg/x SINE Alu 67 294 -16 330 209 57 2 chr6 42178938 42179015 -147100539 - L1MC4 LINE L1 -1340 6982 1977 2354 43 0 0 chr6 42179234 42179544 -147100010 - AluY SINE Alu 0 310 1 2474 43 0 7 chr6 42179766 42180065 -147099489 - AluY SINE Alu -14 297 1 2372 64 0 6 chr6 42180098 42180410 -147099144 - AluY SINE Alu -1 310 1 1953 93 3 21 chr6 42180440 42180765 -147098789 - AluY SINE Alu 0 320 1 253 329 0 0 chr6 42180896 42180978 -147098576 + L2 LINE L2 2601 2682 -632 1870 122 51 0 chr6 42181164 42181460 -147098094 - AluSx SINE Alu -1 311 1 1610 224 193 24 chr6 42181694 42182229 -147097325 + MLT1E2 LTR MaLR 2 626 0 792 241 107 88 chr6 42182229 42182711 -147096843 - MLT1F LTR MaLR -49 506 1 1883 120 0 30 chr6 42182751 42183051 -147096503 - AluSx SINE Alu -13 299 9 2162 78 0 14 chr6 42183373 42183706 -147095848 - AluY SINE Alu 0 311 1 779 99 21 14 chr6 42184009 42184151 -147095403 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 407 287 140 25 chr6 42184236 42184393 -147095161 + MER5A DNA MER1_type 14 188 -1 848 224 20 17 chr6 42184666 42184965 -147094589 + 7SLRNA srpRNA srpRNA 1 300 -20 2905 140 12 17 chr6 42185246 42185725 -147093829 + MER31A LTR ERV1 1 477 -8 4921 163 48 8 chr6 42185850 42186735 -147092819 + L1MD1 LINE L1 5323 6242 0 1784 213 54 82 chr6 42186820 42187450 -147092104 + LTR9 LTR ERV1 1 612 0 567 229 37 60 chr6 42188341 42188559 -147090995 + LTR7 LTR ERV1 238 450 0 683 0 0 0 chr6 42188863 42188936 -147090618 - tRNA-Phe-TTC tRNA tRNA -3 73 1 634 0 0 0 chr6 42189390 42189462 -147090092 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 203 225 12 75 chr6 42189651 42189731 -147089823 - MIR SINE MIR -2 260 186 2164 104 0 0 chr6 42190465 42190764 -147088790 - AluSx SINE Alu -13 299 1 228 111 0 0 chr6 42191239 42191275 -147088279 + (TTTTC)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr6 42191523 42191547 -147088007 + (A)n Simple_repeat Simple_repeat 1 24 0 279 281 35 53 chr6 42191656 42191770 -147087784 + MIR SINE MIR 103 214 -48 2393 58 3 0 chr6 42191863 42192173 -147087381 - AluY SINE Alu 0 311 1 426 145 0 24 chr6 42192904 42192987 -147086567 + AluJo SINE Alu 45 125 -187 198 167 0 0 chr6 42193009 42193045 -147086509 + GA-rich Low_complexity Low_complexity 2 37 0 628 158 194 0 chr6 42193045 42193184 -147086370 + AluJo SINE Alu 120 285 -27 263 208 0 19 chr6 42193734 42193787 -147085767 + L2 LINE L2 3262 3313 0 2206 68 0 24 chr6 42194249 42194542 -147085012 + AluSg SINE Alu 1 286 -24 788 193 56 75 chr6 42194689 42194902 -147084652 + MLT1D LTR MaLR 296 504 -1 407 0 0 0 chr6 42194958 42195005 -147084549 + AluY SINE Alu 1 47 -265 330 0 0 0 chr6 42195005 42195041 -147084513 + AluY SINE Alu 9 44 -257 1973 74 53 3 chr6 42195041 42195325 -147084229 + AluSp SINE Alu 6 303 -10 727 12 0 0 chr6 42196192 42196274 -147083280 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 1833 80 0 4 chr6 42196509 42196760 -147082794 - AluSx SINE Alu -62 250 1 198 339 0 0 chr6 42197030 42197089 -147082465 + L2 LINE L2 3000 3058 -214 226 226 48 0 chr6 42197133 42197195 -147082359 - L2 LINE L2 -63 3209 3145 1151 122 0 6 chr6 42197372 42197544 -147082010 - AluSx SINE Alu -141 171 1 569 261 122 84 chr6 42197544 42197961 -147081593 - L1M4 LINE L1 -2292 3854 3422 359 185 25 25 chr6 42197976 42198057 -147081497 + L1MC5 LINE L1 6776 6856 -1105 1481 209 41 102 chr6 42198076 42198358 -147081196 + L1MC5 LINE L1 7275 7573 -388 1791 139 68 0 chr6 42198358 42198639 -147080915 - AluJb SINE Alu -12 300 1 1481 209 41 102 chr6 42198639 42198769 -147080785 + L1MC5 LINE L1 7573 7709 -252 666 233 8 0 chr6 42198769 42198898 -147080656 - FLAM_A SINE Alu 0 133 4 1481 209 41 102 chr6 42198898 42198934 -147080620 + L1MC5 LINE L1 7709 7746 -215 2314 84 0 3 chr6 42198934 42199245 -147080309 - AluSx SINE Alu -2 310 1 1481 209 41 102 chr6 42199245 42199479 -147080075 + L1MC5 LINE L1 7746 7917 -44 2292 94 3 0 chr6 42199483 42199791 -147079763 - AluSp SINE Alu -4 309 1 1483 278 203 11 chr6 42199802 42200281 -147079273 - HAL1 LINE L1 -1679 828 442 1584 146 93 7 chr6 42200281 42200561 -147078993 - AluSx SINE Alu -8 304 1 1483 278 203 11 chr6 42200561 42200775 -147078779 - HAL1 LINE L1 -2065 442 2 219 297 188 29 chr6 42201130 42201268 -147078286 - L3 LINE CR1 -230 1347 1188 1786 103 114 0 chr6 42201338 42201610 -147077944 - AluSg1 SINE Alu -6 303 1 622 213 194 0 chr6 42201842 42202002 -147077552 + MIR SINE MIR 72 262 0 242 315 111 17 chr6 42201991 42202172 -147077382 - L2 LINE L2 -1084 2230 2033 * 204 301 48 58 chr6 42203978 42204081 -147075473 + L2 LINE L2 2376 2477 -837 285 265 135 60 chr6 42204468 42204653 -147074901 + MLT1K LTR MaLR 379 577 -11 295 365 0 0 chr6 42204748 42204863 -147074691 + L2 LINE L2 2644 2758 -556 528 203 34 74 chr6 42204883 42205031 -147074523 + MIR SINE MIR 3 144 -118 183 239 0 22 chr6 42205251 42205297 -147074257 + L2 LINE L2 2926 2970 -343 1898 122 0 72 chr6 42205361 42205682 -147073872 - AluSx SINE Alu -14 298 1 208 143 0 0 chr6 42206276 42206311 -147073243 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr6 42206610 42206640 -147072914 + AT_rich Low_complexity Low_complexity 1 30 0 210 250 0 0 chr6 42207649 42207689 -147071865 + (TG)n Simple_repeat Simple_repeat 2 41 0 2389 80 0 10 chr6 42207965 42208266 -147071288 - AluY SINE Alu -13 298 1 401 234 21 102 chr6 42208830 42209065 -147070489 - L1MC4 LINE L1 -1 8041 7826 380 214 0 0 chr6 42209103 42209187 -147070367 - L1ME2 LINE L1 -12 6152 6069 25 75 0 0 chr6 42209529 42209582 -147069972 + AT_rich Low_complexity Low_complexity 1 53 0 2293 120 0 0 chr6 42209811 42210111 -147069443 - AluSx SINE Alu -12 300 1 410 185 100 77 chr6 42211499 42211629 -147067925 + L2 LINE L2 2532 2664 -650 842 48 0 0 chr6 42211630 42211734 -147067820 - AluY SINE Alu 0 311 208 652 243 69 6 chr6 42211735 42211908 -147067646 + L2 LINE L2 2671 2854 -460 1004 266 109 70 chr6 42211908 42212436 -147067118 + L2 LINE L2 2766 3313 0 778 241 96 62 chr6 42213097 42213774 -147065780 - L1MC5 LINE L1 -36 7925 7226 513 191 38 91 chr6 42213865 42214075 -147065479 - L1MC5 LINE L1 -770 7191 6993 1286 226 119 55 chr6 42214104 42214235 -147065319 + MLT1F LTR MaLR 1 122 -420 243 0 0 0 chr6 42214235 42214262 -147065292 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1995 143 7 0 chr6 42214264 42214550 -147065004 - AluSx SINE Alu -24 288 1 1286 226 119 55 chr6 42214550 42214852 -147064702 + MLT1F LTR MaLR 122 465 -77 813 269 22 11 chr6 42215068 42215336 -147064218 - L1MC4 LINE L1 -973 7069 6799 424 287 114 36 chr6 42215417 42215584 -147063970 + MIR SINE MIR 49 228 -34 251 330 23 0 chr6 42215609 42215697 -147063857 - MIR3 SINE MIR -22 186 97 569 311 56 0 chr6 42215909 42216089 -147063465 + MIR SINE MIR 59 248 -14 220 333 77 0 chr6 42216296 42216413 -147063141 - L3 LINE CR1 -1024 553 428 274 330 19 9 chr6 42216503 42216609 -147062945 - L3 LINE CR1 -1286 291 185 1917 105 174 85 chr6 42217574 42218023 -147061531 + L1MC1 LINE L1 5845 6333 0 356 167 176 28 chr6 42218371 42218479 -147061075 - L2 LINE L2 0 3313 3190 22 35 0 0 chr6 42219014 42219043 -147060511 + AT_rich Low_complexity Low_complexity 1 29 0 707 218 93 21 chr6 42219047 42219240 -147060314 - MIR SINE MIR -10 252 46 806 318 27 27 chr6 42219324 42219661 -147059893 + HERVL LTR ERVL 4243 4579 -1075 209 318 59 35 chr6 42219720 42219805 -147059749 - L2 LINE L2 -605 2709 2623 416 281 189 0 chr6 42220666 42220819 -147058735 - MIR SINE MIR -78 184 3 5792 161 163 27 chr6 42222142 42223634 -147055920 + pTR5 LTR ERV1 744 2438 0 267 185 108 102 chr6 42224745 42224902 -147054652 - L1MA4 LINE L1 -27 6273 6116 900 184 16 41 chr6 42224910 42224941 -147054613 - L1MA4 LINE L1 -160 6140 6110 2202 92 3 0 chr6 42224941 42225224 -147054330 - AluSg SINE Alu -26 284 1 900 184 16 41 chr6 42225224 42225436 -147054118 - L1MA4 LINE L1 -190 6110 5903 6391 190 67 39 chr6 42225437 42227267 -147052287 - L1 LINE L1 -2337 3991 2212 1709 193 13 3 chr6 42227267 42227572 -147051982 - AluJb SINE Alu -4 308 1 6391 190 67 39 chr6 42227572 42228191 -147051363 - L1 LINE L1 -4116 2212 1611 2357 112 0 0 chr6 42228191 42228504 -147051050 - AluSq SINE Alu 0 313 1 6391 190 67 39 chr6 42228504 42229123 -147050431 - L1 LINE L1 -4717 1611 1010 770 132 25 0 chr6 42229123 42229244 -147050310 - MSTA LTR MaLR 0 428 305 6391 190 67 39 chr6 42229244 42229931 -147049623 - L1 LINE L1 -5318 1010 1 278 174 203 0 chr6 42230406 42230475 -147049079 - MER46C DNA MER2_type -209 129 47 564 197 111 0 chr6 42230478 42230595 -147048959 + FLAM_A SINE Alu 2 131 -2 1455 78 5 5 chr6 42230635 42230840 -147048714 - L1PB1 LINE L1 0 6151 5947 2249 107 0 3 chr6 42230991 42231290 -147048264 - AluSg SINE Alu -12 298 1 515 160 76 56 chr6 42231318 42231462 -147048092 - LTR45B LTR ERV1 0 489 343 675 204 7 13 chr6 42232190 42232342 -147047212 - MER106A DNA MER1_type -84 152 2 21 36 0 0 chr6 42232396 42232424 -147047130 + AT_rich Low_complexity Low_complexity 1 28 0 848 72 64 0 chr6 42233276 42233401 -147046153 + L1PA14 LINE L1 6023 6155 -6 1294 205 0 50 chr6 42235923 42235974 -147043580 - AluJb SINE Alu 0 312 260 1845 147 6 19 chr6 42235974 42236288 -147043266 + AluSx SINE Alu 1 310 -2 1294 205 0 50 chr6 42236288 42236519 -147043035 - AluJb SINE Alu -52 260 44 667 291 57 5 chr6 42236872 42237082 -147042472 + MIR SINE MIR 11 231 -31 455 310 176 21 chr6 42237399 42237638 -147041916 - L3 LINE CR1 -12 1565 1290 558 322 122 23 chr6 42237965 42238406 -147041148 - L3 LINE CR1 -310 1267 783 21 36 0 0 chr6 42238695 42238723 -147040831 + AT_rich Low_complexity Low_complexity 1 28 0 1857 139 4 8 chr6 42338851 42339118 -146940436 + AluJb SINE Alu 35 300 -12 1151 125 164 10 chr6 42339118 42339326 -146940228 + MSTA LTR MaLR 189 428 0 447 358 67 0 chr6 42339386 42339579 -146939975 + L1ME LINE L1 4910 5115 -1031 1727 170 13 0 chr6 42339592 42339903 -146939651 + L1 LINE L1 3867 4181 -1965 285 106 43 0 chr6 42339988 42340035 -146939519 + L1 LINE L1 4168 4216 -1930 294 95 0 0 chr6 42340227 42340269 -146939285 + (CA)n Simple_repeat Simple_repeat 1 42 0 1042 272 66 20 chr6 42340316 42340396 -146939158 + L1ME LINE L1 5106 5181 -981 2405 89 0 3 chr6 42340396 42340698 -146938856 + AluY SINE Alu 1 301 -10 1042 272 66 20 chr6 42340698 42341300 -146938254 + L1ME LINE L1 5181 5817 -345 1823 54 14 5 chr6 42341438 42341659 -146937895 - AluY SINE Alu -88 223 1 2321 82 0 3 chr6 42341661 42341952 -146937602 - AluSc SINE Alu -17 292 3 463 220 5 110 chr6 42341953 42342010 -146937544 + Charlie2 DNA MER1_type 2687 2748 -114 2277 116 0 0 chr6 42342010 42342303 -146937251 - AluSg SINE Alu -17 293 1 463 220 5 110 chr6 42342303 42342436 -146937118 + Charlie2 DNA MER1_type 2748 2857 -5 598 288 7 7 chr6 42342451 42342602 -146936952 + Zaphod DNA AcHobo 2 152 -3879 862 188 50 17 chr6 42342602 42342783 -146936771 - MLT1E LTR MaLR 0 593 407 1315 132 0 0 chr6 42342786 42342968 -146936586 + AluSq SINE Alu 1 182 -131 436 191 0 0 chr6 42343068 42343136 -146936418 + AluJb SINE Alu 212 279 -33 2220 128 0 6 chr6 42343139 42343451 -146936103 + AluSx SINE Alu 3 312 0 222 306 14 0 chr6 42343909 42343981 -146935573 - MIR3 SINE MIR -1 207 135 2330 92 10 0 chr6 42344524 42344827 -146934727 - AluSp SINE Alu -7 306 1 1961 124 6 59 chr6 42344990 42345379 -146934175 + AluSg SINE Alu 1 310 0 551 296 88 33 chr6 42345385 42345747 -146933807 + L1ME LINE L1 5423 5804 -358 899 134 0 143 chr6 42345752 42345864 -146933690 - MER3 DNA MER1_type 0 209 145 2235 75 18 4 chr6 42345864 42346144 -146933410 + AluSc SINE Alu 1 284 -25 899 134 0 143 chr6 42346144 42346262 -146933292 - MER3 DNA MER1_type -64 145 12 2137 95 11 11 chr6 42346362 42346676 -146932878 - AluSx SINE Alu 0 314 1 849 186 0 0 chr6 42346781 42346921 -146932633 - FLAM_C SINE Alu -3 140 1 548 157 0 0 chr6 42347605 42347688 -146931866 + AluJ/FLAM SINE Alu 2 84 -228 267 218 79 40 chr6 42347688 42347789 -146931765 - MLT1J LTR MaLR -46 465 361 337 368 0 7 chr6 42348195 42348347 -146931207 + C-rich Low_complexity Low_complexity 4 154 0 333 314 0 38 chr6 42348619 42348804 -146930750 + C-rich Low_complexity Low_complexity 2 179 0 344 167 14 0 chr6 42348909 42348981 -146930573 + GA-rich Low_complexity Low_complexity 1 73 0 700 67 0 0 chr6 42350337 42350427 -146929127 - LTR8 LTR ERV1 -601 90 1 556 155 0 0 chr6 42350427 42350511 -146929043 - AluJ/FLAM SINE Alu -227 85 2 2150 111 0 36 chr6 42350561 42350868 -146928686 + AluSq SINE Alu 1 296 -17 3904 115 13 0 chr6 42350884 42351431 -146928123 - MER41A LTR ERV1 0 554 1 1115 50 15 28 chr6 42351478 42351758 -146927796 + AluY SINE Alu 2 348 0 814 159 0 100 chr6 42351760 42351930 -146927624 - FAM SINE Alu -32 153 1 1121 142 0 34 chr6 42352264 42352440 -146927114 + AluSg/x SINE Alu 121 290 -20 1511 107 0 0 chr6 42352442 42352639 -146926915 + AluSc SINE Alu 1 197 -112 486 141 0 0 chr6 42352639 42352717 -146926837 + AluS SINE Alu 230 307 -4 703 136 24 32 chr6 42352717 42352842 -146926712 + AluSg SINE Alu 8 131 -179 1042 133 0 0 chr6 42352891 42353041 -146926513 + AluSg SINE Alu 121 270 -42 546 200 157 0 chr6 42353159 42353274 -146926280 + FLAM_A SINE Alu 1 133 0 892 129 0 23 chr6 42353325 42353457 -146926097 - FLAM_C SINE Alu -4 129 1 2142 99 35 0 chr6 42353482 42353766 -146925788 - AluSp SINE Alu -19 294 1 1523 126 36 0 chr6 42354030 42354252 -146925302 + MER30 DNA MER1_type 1 230 0 2123 101 0 49 chr6 42354529 42354835 -146924719 - AluSq SINE Alu -20 293 3 906 261 27 5 chr6 42354972 42355194 -146924360 - MIR SINE MIR 0 262 36 623 206 119 6 chr6 42356274 42356434 -146923120 - MIR SINE MIR -65 197 20 2140 104 25 0 chr6 42356876 42357156 -146922398 - AluSg SINE Alu -23 287 1 1062 105 0 0 chr6 42357159 42357292 -146922262 - AluSq/x SINE Alu -180 133 1 1068 170 147 0 chr6 42357292 42357516 -146922038 - MLT1C LTR MaLR -184 283 27 1782 95 56 0 chr6 42357517 42357769 -146921785 - L1PA11 LINE L1 -1 6173 5908 2039 138 3 13 chr6 42357788 42358093 -146921461 - AluSg SINE Alu -8 302 1 2130 126 13 0 chr6 42358098 42358400 -146921154 - AluY SINE Alu -5 306 1 267 122 0 0 chr6 42358427 42358468 -146921086 - MLT1C LTR MaLR -426 41 1 393 258 8 31 chr6 42358487 42358615 -146920939 + L1MC4 LINE L1 7918 8042 0 267 355 78 14 chr6 42358809 42358950 -146920604 - MIR SINE MIR -66 196 47 2449 58 0 14 chr6 42359019 42359178 -146920376 - AluY SINE Alu -20 291 136 2539 78 0 0 chr6 42359178 42359484 -146920070 - AluY SINE Alu -5 306 1 2449 58 0 14 chr6 42359484 42359618 -146919936 - AluY SINE Alu -175 136 2 1078 105 0 0 chr6 42359718 42359871 -146919683 + MLT1C LTR MaLR 315 467 0 523 174 43 105 chr6 42359878 42359967 -146919587 - L1MC4a LINE L1 -223 7585 7492 1864 123 30 4 chr6 42359967 42360235 -146919319 - AluSx SINE Alu -4 308 34 523 174 43 105 chr6 42360235 42360268 -146919286 - L1MC4a LINE L1 -316 7492 7606 988 174 0 6 chr6 42360268 42360435 -146919119 - FRAM SINE Alu 0 166 1 523 174 43 105 chr6 42360435 42360562 -146918992 - L1MC4a LINE L1 -201 7607 7474 1179 179 0 0 chr6 42360578 42360773 -146918781 - AluJo SINE Alu -1 311 117 2032 135 0 16 chr6 42360773 42361077 -146918477 + AluSg SINE Alu 1 299 -11 677 241 126 30 chr6 42361091 42361290 -146918264 + MLT1E LTR MaLR 194 411 -182 566 146 10 0 chr6 42361294 42361397 -146918157 - AluSg/x SINE Alu 0 312 209 461 189 0 0 chr6 42361605 42361679 -146917875 - MER2 DNA MER2_type 0 345 272 2027 104 42 7 chr6 42361681 42361968 -146917586 + AluSx SINE Alu 5 301 -11 2728 162 45 4 chr6 42362019 42362530 -146917024 - Tigger3b DNA MER2_type -2 1229 698 2416 78 0 20 chr6 42363217 42363523 -146916031 - AluY SINE Alu -11 300 1 431 128 86 8 chr6 42363523 42363640 -146915914 - Tigger3b DNA MER2_type -535 696 571 248 149 0 21 chr6 42363646 42363693 -146915861 + LTR56 LTR ERV1 349 394 -51 2351 108 0 0 chr6 42363699 42364005 -146915549 - AluY SINE Alu -5 306 1 3273 135 47 31 chr6 42364025 42364276 -146915278 - Tigger3b DNA MER2_type -2397 631 386 2455 67 0 13 chr6 42364276 42364575 -146914979 - AluY SINE Alu -16 295 1 3273 135 47 31 chr6 42364575 42364944 -146914610 - Tigger3b DNA MER2_type -2642 386 1 409 77 0 0 chr6 42364944 42365009 -146914545 - MER2 DNA MER2_type -155 190 126 2300 98 0 26 chr6 42365010 42365316 -146914238 + AluSq SINE Alu 1 298 -15 1084 109 7 14 chr6 42365317 42365464 -146914090 + AluSx SINE Alu 42 187 -125 22 35 0 0 chr6 42365674 42365703 -146913851 + GC_rich Low_complexity Low_complexity 1 29 0 2403 109 0 3 chr6 42366301 42366612 -146912942 + AluSg SINE Alu 1 310 0 449 288 60 38 chr6 42367424 42367608 -146911946 + MIR SINE MIR 74 261 -1 3410 142 57 91 chr6 42368231 42368454 -146911100 + L1MA8 LINE L1 4762 4991 -1300 1798 159 55 0 chr6 42368454 42368744 -146910810 + AluSx SINE Alu 1 306 -6 3410 142 57 91 chr6 42368744 42368786 -146910768 + L1MA8 LINE L1 4991 5033 -1258 1595 111 0 0 chr6 42368786 42368985 -146910569 + AluSc SINE Alu 1 199 -110 3410 142 57 91 chr6 42368985 42369024 -146910530 + L1MA8 LINE L1 5033 5072 -1219 411 125 0 0 chr6 42369024 42369088 -146910466 - AluSc SINE Alu -20 289 226 3410 142 57 91 chr6 42369088 42369284 -146910270 + L1MA8 LINE L1 5072 5273 -1018 1855 182 0 7 chr6 42369284 42369580 -146909974 - AluJo SINE Alu -18 294 1 3410 142 57 91 chr6 42369580 42370217 -146909337 + L1MA8 LINE L1 5273 5940 -351 1157 152 0 16 chr6 42370220 42370404 -146909150 + FRAM SINE Alu 1 174 -2 934 115 26 83 chr6 42370404 42370596 -146908958 + L1MA8 LINE L1 5944 6124 -167 903 136 23 0 chr6 42370596 42370728 -146908826 + AluJo SINE Alu 1 135 -177 1882 166 7 3 chr6 42370728 42371024 -146908530 + AluJo SINE Alu 1 297 -15 2365 96 0 0 chr6 42371215 42371507 -146908047 + AluSq SINE Alu 1 292 -21 2178 102 7 23 chr6 42371507 42371811 -146907743 + AluSp SINE Alu 1 300 -13 1929 161 28 0 chr6 42371822 42372113 -146907441 + AluJb SINE Alu 1 299 -13 2240 102 6 16 chr6 42372492 42372805 -146906749 + AluSg SINE Alu 1 310 0 273 383 26 0 chr6 42372850 42372965 -146906589 - L2 LINE L2 -39 3233 3116 311 71 0 0 chr6 42373273 42373315 -146906239 + AluJb SINE Alu 66 107 -195 710 291 31 22 chr6 42373525 42373752 -146905802 + MLT1J LTR MaLR 3 231 -280 1952 83 0 28 chr6 42373800 42374052 -146905502 + AluSx SINE Alu 3 247 -65 225 0 0 0 chr6 42375485 42375510 -146904044 + (TC)n Simple_repeat Simple_repeat 2 26 0 2407 88 3 0 chr6 42380852 42381147 -146898407 - AluSp SINE Alu -17 296 1 293 264 23 0 chr6 42381154 42381241 -146898313 + HAL1 LINE L1 822 910 -1597 2340 105 0 3 chr6 42382070 42382384 -146897170 + AluSq SINE Alu 1 313 0 2525 70 0 6 chr6 42382387 42382699 -146896855 + AluY SINE Alu 1 310 -1 2432 109 0 0 chr6 42382886 42383198 -146896356 + AluSx SINE Alu 1 312 0 877 199 8 134 chr6 42383229 42383366 -146896188 + AluJo SINE Alu 1 154 -158 2111 126 7 13 chr6 42383366 42383667 -146895887 + AluSx SINE Alu 1 299 -13 2028 130 14 10 chr6 42383677 42383970 -146895584 + AluSx SINE Alu 1 294 -18 2442 83 6 13 chr6 42383975 42384287 -146895267 + AluY SINE Alu 1 310 -1 877 199 8 134 chr6 42384287 42384378 -146895176 + AluJo SINE Alu 168 215 -97 3439 86 0 50 chr6 42384517 42384579 -146894975 + LTR8 LTR ERV1 191 255 -436 2364 115 0 0 chr6 42384579 42384892 -146894662 + AluSq SINE Alu 1 313 0 3439 86 0 50 chr6 42384892 42385184 -146894370 + LTR8 LTR ERV1 255 513 -178 2181 124 20 0 chr6 42385184 42385490 -146894064 + AluSx SINE Alu 1 312 0 3439 86 0 50 chr6 42385490 42385659 -146893895 + LTR8 LTR ERV1 513 689 -2 1282 187 0 0 chr6 42385660 42385874 -146893680 + AluJb SINE Alu 81 294 -18 1976 203 139 42 chr6 42386162 42386238 -146893316 - LTR29 LTR ERV1 0 622 555 1769 141 69 0 chr6 42386238 42386500 -146893054 + AluSx SINE Alu 1 280 -32 228 35 0 0 chr6 42386503 42386532 -146893022 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1976 203 139 42 chr6 42386532 42387018 -146892536 - LTR29 LTR ERV1 -68 554 1 2359 99 10 0 chr6 42387061 42387363 -146892191 - AluSx SINE Alu -7 305 1 2117 101 0 7 chr6 42387365 42387642 -146891912 - AluSx SINE Alu -14 298 24 721 107 0 107 chr6 42387647 42387796 -146891758 - FLAM_C SINE Alu 0 133 1 2519 231 184 19 chr6 42388426 42388705 -146890849 - L2 LINE L2 -700 2614 2382 2233 110 0 7 chr6 42388705 42388997 -146890557 - AluSx SINE Alu -22 290 1 2519 231 184 19 chr6 42388997 42389601 -146889953 - L2 LINE L2 -932 2382 1585 382 242 118 31 chr6 42390181 42390342 -146889212 - L2 LINE L2 -1 3312 3138 519 244 87 0 chr6 42390460 42390587 -146888967 + FLAM_A SINE Alu 1 138 -4 1003 106 19 50 chr6 42390640 42390800 -146888754 - AluJb SINE Alu -2 310 156 2525 60 0 7 chr6 42390893 42391194 -146888360 - AluY SINE Alu -12 299 1 2091 103 51 7 chr6 42391197 42391489 -146888065 - AluSx SINE Alu -7 305 1 2452 97 0 0 chr6 42391509 42391809 -146887745 - AluSg SINE Alu -10 300 1 2318 92 6 19 chr6 42392663 42392979 -146886575 - AluSx SINE Alu 0 312 1 242 91 30 45 chr6 42393210 42393276 -146886278 + GA-rich Low_complexity Low_complexity 2 66 0 245 258 0 15 chr6 42393303 42393369 -146886185 + GA-rich Low_complexity Low_complexity 3 67 0 28 0 0 0 chr6 42397018 42397046 -146882508 + AT_rich Low_complexity Low_complexity 1 28 0 1913 71 4 0 chr6 42398393 42398633 -146880921 + AluY SINE Alu 58 298 -13 2040 125 3 22 chr6 42398637 42398948 -146880606 + AluJb SINE Alu 2 306 -6 1121 236 125 30 chr6 42398987 42399551 -146880003 + L2 LINE L2 2713 3309 -4 185 312 160 24 chr6 42401410 42401535 -146878019 - MIR3 SINE MIR -64 144 3 23 33 0 0 chr6 42401998 42402028 -146877526 + AT_rich Low_complexity Low_complexity 1 30 0 669 282 116 33 chr6 42402049 42402531 -146877023 + L1M4 LINE L1 3865 4386 -1760 2481 60 0 13 chr6 42402534 42402848 -146876706 + AluY SINE Alu 1 310 -1 450 35 0 0 chr6 42402849 42402907 -146876647 + AluSq SINE Alu 134 191 -122 2539 75 7 0 chr6 42403029 42403336 -146876218 + AluSg1 SINE Alu 1 309 0 2123 133 0 10 chr6 42403402 42403702 -146875852 + AluSq SINE Alu 2 298 -15 201 296 0 0 chr6 42403830 42403901 -146875653 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 23 0 0 0 chr6 42404012 42404035 -146875519 + AT_rich Low_complexity Low_complexity 1 23 0 2189 85 78 0 chr6 42404047 42404330 -146875224 - AluY SINE Alu -6 305 1 2278 89 0 0 chr6 42404333 42404613 -146874941 - AluSg SINE Alu -30 280 1 2156 128 10 19 chr6 42404668 42404981 -146874573 - AluSx SINE Alu -2 310 1 22 35 0 0 chr6 42404981 42405010 -146874544 + AT_rich Low_complexity Low_complexity 1 29 0 865 137 0 0 chr6 42405010 42405127 -146874427 - FLAM_C SINE Alu -25 118 2 1250 183 23 108 chr6 42405413 42405812 -146873742 - MLT1A1 LTR MaLR 0 365 1 229 37 0 0 chr6 42405994 42406021 -146873533 - LTR7 LTR ERV1 -423 27 1 1325 97 37 0 chr6 42406021 42406237 -146873317 - HERVH LTR ERV1 0 7713 7490 2241 109 0 26 chr6 42406237 42406549 -146873005 + AluSx SINE Alu 2 305 -7 245 138 28 0 chr6 42406572 42406627 -146872927 + Alu SINE Alu 1 34 -99 13343 94 4 0 chr6 42406627 42408530 -146871024 - HERVH LTR ERV1 -210 7503 5594 8356 110 13 38 chr6 42408527 42410365 -146869189 - HERVH LTR ERV1 -1290 5364 3357 * 6822 127 3 19 chr6 42410365 42411526 -146868028 - HERVH LTR ERV1 -4883 2830 1688 1177 86 0 0 chr6 42411526 42411677 -146867877 + AluSg/x SINE Alu 144 294 -16 899 120 0 0 chr6 42412738 42412871 -146866683 - L1PA15 LINE L1 -2 6163 6031 984 160 0 24 chr6 42412985 42413154 -146866400 + AluJb SINE Alu 134 298 -14 1075 83 0 0 chr6 42416748 42416881 -146862673 - AluSq/x SINE Alu -179 133 1 2180 177 21 38 chr6 42416883 42417306 -146862248 + MER67A LTR ERV1 80 498 -45 2008 123 3 0 chr6 42417306 42417626 -146861928 - AluSx SINE Alu 0 321 1 2180 177 21 38 chr6 42417626 42417670 -146861884 + MER67A LTR ERV1 498 541 -2 1224 145 0 0 chr6 42417671 42417878 -146861676 + L1MB5 LINE L1 5618 5824 -360 899 170 0 0 chr6 42417878 42418019 -146861535 + AluJb SINE Alu 166 306 -6 676 140 0 35 chr6 42418044 42418158 -146861396 + AluJ SINE Alu 25 134 -178 967 189 11 5 chr6 42419795 42419980 -146859574 + AluJ SINE Alu 120 305 -7 315 127 0 0 chr6 42419996 42420051 -146859503 + L1MB5 LINE L1 5834 5888 -286 237 313 0 0 chr6 42420130 42420245 -146859309 - L1M4 LINE L1 -2386 3760 3646 1859 123 0 53 chr6 42420247 42420548 -146859006 - AluSx SINE Alu -19 293 9 2321 92 0 16 chr6 42420643 42420958 -146858596 - AluSg SINE Alu 0 310 1 414 335 89 18 chr6 42421066 42421347 -146858207 + L2 LINE L2 2971 3271 -1 2489 58 0 3 chr6 42421751 42422061 -146857493 - AluY SINE Alu -2 309 1 187 250 33 50 chr6 42422953 42423013 -146856541 + MIR SINE MIR 3 61 -201 268 146 0 0 chr6 42423022 42423063 -146856491 + MER57A LTR ERV1 295 335 -68 1991 123 33 0 chr6 42423150 42423452 -146856102 + AluSq SINE Alu 1 312 -1 550 249 103 5 chr6 42423465 42423650 -146855904 - MLT1L LTR MaLR -5 610 408 360 264 7 68 chr6 42427789 42427937 -146851617 + MIR3 SINE MIR 50 188 -20 204 305 156 57 chr6 42429007 42429148 -146850406 - MER5B DNA MER1_type 0 178 24 2117 82 7 4 chr6 42429306 42429623 -146849931 - AluSp SINE Alu 0 321 4 1953 114 3 21 chr6 42429628 42429939 -146849615 - AluSq SINE Alu 0 306 1 1672 146 0 60 chr6 42430120 42430435 -146849119 - AluJb SINE Alu -12 300 5 476 90 0 0 chr6 42430445 42430512 -146849042 - Alu SINE Alu -7 305 239 269 258 129 0 chr6 42430617 42430710 -146848844 + L2 LINE L2 3168 3272 0 734 185 90 42 chr6 42430968 42431157 -146848397 - MIR SINE MIR -63 199 2 218 305 42 32 chr6 42433195 42433290 -146846264 + MIR SINE MIR 21 116 -146 528 121 0 0 chr6 42433445 42433528 -146846026 - MER33 DNA MER1_type -241 83 1 289 339 46 8 chr6 42433764 42433894 -146845660 + L2 LINE L2 2567 2701 -613 2303 102 0 0 chr6 42433921 42434225 -146845329 - AluSx SINE Alu -8 304 1 626 149 67 8 chr6 42434286 42434420 -146845134 - Charlie1 DNA MER1_type 0 2761 2620 604 269 20 61 chr6 42434404 42434533 -146845021 - Charlie1 DNA MER1_type -2522 239 106 * 2439 47 0 3 chr6 42434533 42434833 -146844721 - AluY SINE Alu -12 299 1 2455 48 0 0 chr6 42434841 42435136 -146844418 - AluY SINE Alu -15 296 2 604 269 20 61 chr6 42435136 42435242 -146844312 - Charlie1 DNA MER1_type -2662 99 5 378 231 46 31 chr6 42435577 42435707 -146843847 + L2 LINE L2 3134 3265 -7 186 133 0 0 chr6 42437033 42437063 -146842491 + (GGA)n Simple_repeat Simple_repeat 3 32 0 245 229 0 0 chr6 42437481 42437529 -146842025 + C-rich Low_complexity Low_complexity 1 48 0 207 272 54 22 chr6 42438517 42438609 -146840945 + MIR SINE MIR 29 123 -139 397 203 70 47 chr6 42440925 42441053 -146838501 + MIR SINE MIR 110 240 -22 194 125 0 0 chr6 42441112 42441144 -146838410 + MIR SINE MIR 84 115 -147 207 0 0 0 chr6 42444605 42444628 -146834926 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 472 328 0 0 chr6 42448758 42448889 -146830665 + MIR SINE MIR 18 148 -114 1268 175 30 43 chr6 42448902 42449028 -146830526 - Cheshire DNA MER1_type 0 2420 2294 2173 113 0 0 chr6 42449028 42449320 -146830234 - AluSx SINE Alu -20 292 1 2153 85 3 26 chr6 42449320 42449626 -146829928 - AluSx SINE Alu -13 299 1 1268 175 30 43 chr6 42449626 42449661 -146829893 - Cheshire DNA MER1_type -125 2295 2261 2202 105 3 3 chr6 42449661 42449966 -146829588 + AluSq SINE Alu 1 305 -8 1674 168 16 36 chr6 42449976 42450285 -146829269 + AluJb SINE Alu 1 303 -9 1268 175 30 43 chr6 42450285 42450481 -146829073 - Cheshire DNA MER1_type -168 2252 2055 1464 210 64 11 chr6 42450487 42450844 -146828710 - Cheshire DNA MER1_type -2044 376 1 244 258 108 32 chr6 42450853 42450946 -146828608 + MIR SINE MIR 162 261 -1 286 296 0 12 chr6 42451080 42451161 -146828393 - L2 LINE L2 0 3272 3193 2111 95 0 26 chr6 42451222 42451526 -146828028 - AluSg SINE Alu -14 296 1 2037 125 13 7 chr6 42451565 42451870 -146827684 - AluSx SINE Alu -5 307 1 977 129 6 79 chr6 42452009 42452187 -146827367 - AluJb SINE Alu -147 165 1 2199 100 3 0 chr6 42452267 42452558 -146826996 - AluSg SINE Alu -18 292 1 1693 136 53 0 chr6 42453385 42453650 -146825904 + AluSx SINE Alu 20 298 -14 303 307 109 0 chr6 42454280 42454381 -146825173 + MIR SINE MIR 110 221 -41 210 37 0 0 chr6 42458619 42458646 -146820908 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1962 129 17 10 chr6 42459869 42460163 -146819391 + AluSx SINE Alu 1 296 -16 505 211 27 6 chr6 42460655 42460888 -146818666 + MLT1C LTR MaLR 54 322 -145 1351 143 160 4 chr6 42461029 42461266 -146818288 + AluJb SINE Alu 19 292 -20 1625 143 155 0 chr6 42461269 42461527 -146818027 + AluSx SINE Alu 1 298 -14 563 90 0 34 chr6 42461584 42461673 -146817881 - AluSq/x SINE Alu -185 127 42 764 239 106 9 chr6 42464145 42464363 -146815191 + MIR SINE MIR 3 241 -21 2495 45 3 7 chr6 42464516 42464808 -146814746 - AluY SINE Alu -20 291 1 542 212 15 30 chr6 42464834 42464966 -146814588 - FLAM_A SINE Alu -3 130 1 1567 143 121 7 chr6 42469044 42469316 -146810238 + AluJo SINE Alu 1 303 -9 2277 88 18 0 chr6 42469317 42469602 -146809952 + AluSg SINE Alu 1 290 -20 1685 198 10 17 chr6 42469805 42470093 -146809461 + AluJo SINE Alu 1 286 -26 2358 104 3 13 chr6 42470103 42470411 -146809143 + AluSq SINE Alu 3 307 -6 387 265 120 0 chr6 42471746 42471863 -146807691 + L2 LINE L2 3137 3267 -5 270 0 0 0 chr6 42472042 42472072 -146807482 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 390 21 0 0 chr6 42472071 42472118 -146807436 + (TG)n Simple_repeat Simple_repeat 2 48 0 1211 158 6 0 chr6 42472218 42472401 -146807153 - AluJb SINE Alu -8 304 121 6397 104 28 26 chr6 42472424 42473438 -146806116 - L1MA1 LINE L1 -104 6198 5188 2412 91 7 0 chr6 42473438 42473745 -146805809 - AluSp SINE Alu -4 309 1 6397 104 28 26 chr6 42473745 42474024 -146805530 - L1MA1 LINE L1 -1114 5188 4903 2141 126 3 0 chr6 42474024 42474318 -146805236 - AluSx SINE Alu -17 295 1 6397 104 28 26 chr6 42474318 42474373 -146805181 - L1MA1 LINE L1 -1399 4903 4850 267 194 107 97 chr6 42474374 42474477 -146805077 - AluJb SINE Alu -138 164 61 2118 128 7 3 chr6 42474489 42474786 -146804768 - AluSx SINE Alu -14 298 1 752 234 0 35 chr6 42475149 42475320 -146804234 + FRAM SINE Alu 1 165 -1 596 230 99 70 chr6 42475334 42475717 -146803837 - L1ME2 LINE L1 -277 5887 5470 1272 160 5 0 chr6 42475754 42475967 -146803587 - MER46A DNA MER2_type -22 214 1 239 253 27 0 chr6 42475967 42476042 -146803512 - L1ME2 LINE L1 -718 5444 5368 3156 95 24 32 chr6 42476043 42476536 -146803018 + LTR22B LTR ERVK 1 489 -3 305 316 39 26 chr6 42476585 42476639 -146802915 - L1ME2 LINE L1 -786 5360 5308 1703 157 78 0 chr6 42476639 42476920 -146802634 + AluSx SINE Alu 1 303 -9 305 316 39 26 chr6 42476920 42477020 -146802534 - L1ME2 LINE L1 -838 5308 5204 292 132 145 40 chr6 42477025 42477101 -146802453 - FLAM_A SINE Alu 0 133 50 2213 114 7 0 chr6 42477101 42477398 -146802156 - AluSq SINE Alu -14 299 1 395 233 83 89 chr6 42477398 42477471 -146802083 - L1ME2 LINE L1 -948 5198 5126 1748 163 13 26 chr6 42477471 42477777 -146801777 - AluJb SINE Alu -10 302 1 395 233 83 89 chr6 42477777 42477804 -146801750 - L1ME2 LINE L1 -1020 5126 5100 2287 107 0 7 chr6 42477804 42478103 -146801451 + AluSc SINE Alu 1 297 -12 395 233 83 89 chr6 42478103 42478168 -146801386 - L1ME2 LINE L1 -1046 5100 5036 1954 160 0 22 chr6 42478168 42478487 -146801067 + AluJb SINE Alu 1 312 0 395 233 83 89 chr6 42478487 42478632 -146800922 - L1ME2 LINE L1 -1110 5036 4888 1792 106 0 4 chr6 42478632 42478867 -146800687 - AluSg/x SINE Alu -1 309 76 334 218 40 10 chr6 42478882 42478983 -146800571 - L1ME2 LINE L1 -1528 4618 4515 1218 137 33 0 chr6 42478999 42479182 -146800372 - AluJo SINE Alu -11 301 113 23 0 0 0 chr6 42479186 42479209 -146800345 + AT_rich Low_complexity Low_complexity 1 23 0 246 268 14 94 chr6 42479399 42479537 -146800017 - L1ME2 LINE L1 -1959 4187 4061 951 148 0 138 chr6 42479545 42479663 -146799891 + AluJo SINE Alu 6 82 -230 2123 83 13 45 chr6 42479663 42479976 -146799578 - AluY SINE Alu -8 303 1 951 148 0 138 chr6 42479976 42480074 -146799480 + AluJo SINE Alu 82 192 -120 681 160 103 38 chr6 42480373 42480516 -146799038 - Charlie5 DNA MER1_type -22 2563 2400 1881 138 24 17 chr6 42480516 42480812 -146798742 + AluJb SINE Alu 7 304 -8 681 160 103 38 chr6 42480812 42480881 -146798673 - Charlie5 DNA MER1_type -185 2400 2337 1094 119 12 12 chr6 42481177 42481366 -146798188 - AluSg/x SINE Alu 0 312 124 269 245 21 98 chr6 42481520 42481663 -146797891 - L1MC5 LINE L1 -76 7885 7754 1024 164 7 0 chr6 42481719 42481871 -146797683 - FRAM SINE Alu -22 154 2 1051 191 122 57 chr6 42481881 42481969 -146797585 - L1MC5 LINE L1 -264 7697 7616 2405 96 0 7 chr6 42481969 42482272 -146797282 - AluSq SINE Alu -12 301 1 1051 191 122 57 chr6 42482272 42482660 -146796894 - L1MC5 LINE L1 -345 7616 7190 229 259 185 42 chr6 42482665 42482870 -146796684 - L1MEd LINE L1 -5025 1094 920 2486 93 0 0 chr6 42482870 42483171 -146796383 - AluSx SINE Alu -11 301 1 229 259 185 42 chr6 42483171 42483398 -146796156 - L1MEd LINE L1 -5199 920 600 2333 116 0 0 chr6 42484106 42484416 -146795138 - AluSg SINE Alu 0 310 1 1912 137 14 0 chr6 42487768 42488083 -146791471 + AluSx SINE Alu 1 312 0 1616 146 26 55 chr6 42488113 42488422 -146791132 + AluJo SINE Alu 1 300 -12 289 294 101 0 chr6 42488577 42488686 -146790868 - L2 LINE L2 -2 3311 3192 196 350 146 0 chr6 42488676 42488799 -146790755 - MIR SINE MIR -59 203 63 * 372 22 0 0 chr6 42489518 42489563 -146789991 + (TG)n Simple_repeat Simple_repeat 1 45 0 1317 118 0 20 chr6 42489752 42489947 -146789607 - AluSg/x SINE Alu 0 310 120 638 69 46 0 chr6 42490048 42490135 -146789419 + AluSp/q SINE Alu 203 293 -20 207 0 0 0 chr6 42490136 42490159 -146789395 + (TA)n Simple_repeat Simple_repeat 2 24 0 1089 104 0 0 chr6 42490164 42490299 -146789255 + AluSq/x SINE Alu 1 135 -178 2145 135 3 3 chr6 42490299 42490602 -146788952 + AluSq SINE Alu 1 303 -10 306 231 0 0 chr6 42490603 42490655 -146788899 + L1MC4 LINE L1 6651 6702 -1340 501 76 0 0 chr6 42490677 42490743 -146788811 + Alu SINE Alu 1 66 -243 2077 133 16 7 chr6 42490747 42491055 -146788499 + AluJb SINE Alu 1 311 -1 673 138 0 0 chr6 42491788 42492054 -146787500 - AluSp/q SINE Alu 0 440 175 311 335 131 11 chr6 42492180 42492356 -146787198 - L1M4 LINE L1 -1870 4276 4080 1428 157 4 44 chr6 42492452 42492574 -146786980 - AluJo SINE Alu -74 238 113 3068 100 4 39 chr6 42492574 42492664 -146786890 + L1PA11 LINE L1 5697 5789 -385 2203 113 27 7 chr6 42492664 42492965 -146786589 + AluSg SINE Alu 1 307 -3 2275 120 0 0 chr6 42492966 42493265 -146786289 + AluSg SINE Alu 2 300 -10 3068 100 4 39 chr6 42493265 42493661 -146785893 + L1PA11 LINE L1 5788 6168 -6 1428 157 4 44 chr6 42493661 42493786 -146785768 - AluJo SINE Alu -199 113 1 620 294 119 36 chr6 42494091 42494855 -146784699 - L2 LINE L2 0 3313 2485 222 305 105 11 chr6 42494888 42494983 -146784571 + L2 LINE L2 3209 3312 -1 1962 163 3 3 chr6 42495412 42495719 -146783835 - AluSx SINE Alu -5 307 1 22 35 0 0 chr6 42495854 42495883 -146783671 + AT_rich Low_complexity Low_complexity 1 29 0 218 169 42 28 chr6 42497013 42497084 -146782470 + GA-rich Low_complexity Low_complexity 1 72 0 473 238 161 26 chr6 42497602 42497625 -146781929 - MIR SINE MIR -10 252 233 932 169 33 0 chr6 42497625 42497808 -146781746 - MER5A DNA MER1_type 0 189 1 473 238 161 26 chr6 42497808 42497977 -146781577 - MIR SINE MIR -29 233 34 554 262 47 29 chr6 42501455 42501627 -146777927 - MIR SINE MIR -4 258 84 442 129 129 0 chr6 42501637 42501722 -146777832 + MER5A DNA MER1_type 8 103 -86 1743 177 0 44 chr6 42501881 42502197 -146777357 - AluJb SINE Alu -10 302 1 350 305 97 13 chr6 42503189 42503343 -146776211 + MER5A DNA MER1_type 7 173 -16 299 183 32 75 chr6 42503390 42503483 -146776071 + MIR SINE MIR 131 219 -43 262 242 10 30 chr6 42503805 42503904 -146775650 + C-rich Low_complexity Low_complexity 5 101 0 2369 89 33 0 chr6 42505680 42505982 -146773572 - AluSx SINE Alu 0 312 1 442 278 18 85 chr6 42506341 42506462 -146773092 - MIR SINE MIR 0 262 161 1920 163 23 7 chr6 42506462 42506763 -146772791 - AluJo SINE Alu -6 306 1 442 278 18 85 chr6 42506763 42506864 -146772690 - MIR SINE MIR -101 161 55 4571 83 18 32 chr6 42506864 42507488 -146772066 + SVA Other Other 772 1386 0 1556 100 62 147 chr6 42507644 42507984 -146771570 - AluYb8 SINE Alu -7 311 1 1643 177 115 41 chr6 42508670 42509105 -146770449 + LTR10A LTR ERV1 82 548 -61 673 257 38 27 chr6 42509114 42509297 -146770257 + LTR10A-int LTR ERV1 1 185 -6464 1716 100 15 92 chr6 42509298 42509634 -146769920 - LTR14B LTR ERVK -2 606 54 13804 58 2 25 chr6 42509643 42509783 -146769771 + Harlequin LTR ERV1 2035 2177 -4719 2280 98 0 26 chr6 42509783 42510089 -146769465 + AluSx SINE Alu 1 298 -14 13804 58 2 25 chr6 42510089 42510279 -146769275 + Harlequin LTR ERV1 2177 2370 -4526 2405 90 3 3 chr6 42510279 42510580 -146768974 + AluSp SINE Alu 1 301 -12 13804 58 2 25 chr6 42510580 42510605 -146768949 + Harlequin LTR ERV1 2370 2394 -4502 2527 81 3 0 chr6 42510605 42510915 -146768639 + AluY SINE Alu 1 311 0 13804 58 2 25 chr6 42510915 42510993 -146768561 + Harlequin LTR ERV1 2394 2472 -4424 2364 82 0 3 chr6 42510993 42511287 -146768267 + AluSx SINE Alu 1 293 -19 13804 58 2 25 chr6 42511287 42513002 -146766552 + Harlequin LTR ERV1 2472 4157 -2739 1255 178 186 26 chr6 42513082 42513470 -146766084 - LTR7 LTR ERV1 0 450 1 406 168 196 133 chr6 42513981 42514104 -146765450 + L1MC5 LINE L1 6730 6869 -1092 2411 54 24 3 chr6 42514104 42514399 -146765155 - AluY SINE Alu -10 301 1 406 168 196 133 chr6 42514399 42514448 -146765106 + L1MC5 LINE L1 6869 6913 -1048 282 116 0 0 chr6 42514458 42514501 -146765053 + Alu SINE Alu 1 43 -265 510 148 0 0 chr6 42514502 42514590 -146764964 + AluJ/FRAM SINE Alu 218 305 -7 665 253 86 8 chr6 42514607 42514852 -146764702 + L1MC5 LINE L1 6971 7234 -727 349 256 152 26 chr6 42514943 42515212 -146764342 + L1MC5 LINE L1 7397 7699 -262 344 282 43 103 chr6 42515386 42515620 -146763934 + L1MEd LINE L1 329 548 -5571 * 719 253 54 17 chr6 42515619 42515860 -146763694 + L1MC4a LINE L1 5613 5862 -1946 2036 172 0 0 chr6 42515860 42516163 -146763391 - AluJb SINE Alu -9 303 1 349 268 57 8 chr6 42517316 42517439 -146762115 - L2 LINE L2 -350 2964 2836 212 318 56 67 chr6 42518646 42518841 -146760713 - L2 LINE L2 -238 3034 2842 658 204 7 15 chr6 42520152 42520289 -146759265 + MER2 DNA MER2_type 1 136 -209 2293 85 3 0 chr6 42520302 42520584 -146758970 - AluSx SINE Alu -29 283 1 938 130 36 148 chr6 42520584 42520757 -146758797 + AluJo SINE Alu 115 259 -53 2461 71 7 10 chr6 42520757 42521065 -146758489 - AluSc SINE Alu -2 307 1 938 130 36 148 chr6 42521065 42521114 -146758440 + AluJo SINE Alu 259 312 0 410 296 107 0 chr6 42521268 42521437 -146758117 - Charlie2 DNA MER1_type -2561 221 35 201 313 12 24 chr6 42523646 42523729 -146755825 + CT-rich Low_complexity Low_complexity 4 85 0 276 100 0 0 chr6 42525166 42525206 -146754348 + (GGA)n Simple_repeat Simple_repeat 2 41 0 268 260 0 0 chr6 42525217 42525290 -146754264 + GA-rich Low_complexity Low_complexity 2 74 0 1308 104 50 59 chr6 42526865 42527085 -146752469 - AluJb SINE Alu -7 305 88 33 0 0 0 chr6 42527625 42527658 -146751896 + GC_rich Low_complexity Low_complexity 1 33 0 644 124 10 0 chr6 42527843 42527940 -146751614 - AluS SINE Alu -214 99 2 709 128 16 0 chr6 42527951 42528076 -146751478 + CT-rich Low_complexity Low_complexity 2 128 0 926 170 24 24 chr6 42528084 42528249 -146751305 - AluJb SINE Alu -10 302 138 1008 195 53 11 chr6 42528297 42528690 -146750864 + Charlie4a DNA MER1_type 61 507 -1 2423 102 0 3 chr6 42528756 42529069 -146750485 - AluSx SINE Alu 0 312 1 692 223 42 12 chr6 42529325 42529422 -146750132 + MER97b DNA MER1_type? 6 112 -941 2372 102 0 0 chr6 42529422 42529726 -146749828 - AluSx SINE Alu -8 304 1 692 223 42 12 chr6 42529726 42529794 -146749760 + MER97b DNA MER1_type? 112 176 -877 501 32 0 0 chr6 42529872 42529935 -146749619 + (CA)n Simple_repeat Simple_repeat 2 64 0 563 241 0 50 chr6 42530527 42530668 -146748886 - MLT1E3 LTR MaLR -436 188 55 1716 161 12 62 chr6 42531262 42531388 -146748166 + AluJb SINE Alu 1 132 -180 2365 80 7 0 chr6 42531388 42531677 -146747877 - AluSg SINE Alu -19 291 1 1716 161 12 62 chr6 42531677 42531873 -146747681 + AluJb SINE Alu 132 307 -5 2331 118 0 0 chr6 42532001 42532306 -146747248 - AluSq SINE Alu -8 305 1 650 233 71 57 chr6 42532973 42532997 -146746557 - MIR SINE MIR -30 232 210 2447 105 57 38 chr6 42532997 42533067 -146746487 - MSTA LTR MaLR 0 428 361 2390 100 0 0 chr6 42533067 42533367 -146746187 + AluSx SINE Alu 2 301 -11 1858 148 28 24 chr6 42533374 42533665 -146745889 + AluJb SINE Alu 2 293 -19 2447 105 57 38 chr6 42533665 42534006 -146745548 - MSTA LTR MaLR -72 356 1 650 233 71 57 chr6 42534006 42534191 -146745363 - MIR SINE MIR -52 210 20 280 152 30 0 chr6 42534197 42534263 -146745291 + CT-rich Low_complexity Low_complexity 2 69 0 1793 148 76 10 chr6 42534266 42534557 -146744997 - AluSg SINE Alu 0 310 1 2197 108 7 10 chr6 42534567 42534873 -146744681 - AluSx SINE Alu -7 305 1 1849 325 148 42 chr6 42534890 42536253 -146743301 + L2 LINE L2 71 1289 -2025 1750 170 0 65 chr6 42536253 42536576 -146742978 + AluJo SINE Alu 1 302 -10 1849 325 148 42 chr6 42536576 42537255 -146742299 + L2 LINE L2 1289 2338 -976 2380 95 0 3 chr6 42537255 42537559 -146741995 - AluSq SINE Alu -10 303 1 1849 325 148 42 chr6 42537559 42537597 -146741957 + L2 LINE L2 2338 2371 -943 1575 238 37 17 chr6 42537604 42538011 -146741543 + Zaphod DNA AcHobo 1 415 -3616 935 106 20 7 chr6 42538137 42538288 -146741266 + L1PB1 LINE L1 5997 6149 -2 278 242 32 11 chr6 42538288 42538383 -146741171 + Zaphod DNA AcHobo 605 701 -3330 914 202 93 0 chr6 42538383 42538576 -146740978 + MER2 DNA MER2_type 1 211 -134 386 52 0 35 chr6 42538589 42538647 -146740907 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2170 107 7 3 chr6 42538647 42538936 -146740618 - AluY SINE Alu -19 292 3 294 261 15 0 chr6 42538957 42539022 -146740532 + MER2 DNA MER2_type 280 345 0 1790 185 25 30 chr6 42539046 42539257 -146740297 - MLT1A1 LTR MaLR 0 365 155 2042 152 0 0 chr6 42539257 42539547 -146740007 - AluSx SINE Alu -22 290 1 1790 185 25 30 chr6 42539547 42539702 -146739852 - MLT1A1 LTR MaLR -210 155 1 21 0 0 0 chr6 42539706 42539727 -146739827 + AT_rich Low_complexity Low_complexity 1 21 0 1857 174 3 0 chr6 42539734 42540022 -146739532 - AluJb SINE Alu -23 289 1 1270 206 0 0 chr6 42540116 42540334 -146739220 + AluJo SINE Alu 3 220 -92 340 74 0 19 chr6 42540334 42540388 -146739166 + AluSq/x SINE Alu 86 138 -165 288 186 0 0 chr6 42540406 42540465 -146739089 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1060 190 17 0 chr6 42540465 42540644 -146738910 + AluJb SINE Alu 125 306 -6 301 273 100 0 chr6 42540717 42540827 -146738727 + MER102b DNA MER1_type 208 328 -13 214 162 0 0 chr6 42540967 42541004 -146738550 + (CAA)n Simple_repeat Simple_repeat 2 38 0 451 237 52 15 chr6 42541012 42541147 -146738407 - MIR SINE MIR -20 242 103 2326 95 14 0 chr6 42541156 42541451 -146738103 + AluSg SINE Alu 1 299 -11 24 0 0 0 chr6 42541688 42541712 -146737842 + AT_rich Low_complexity Low_complexity 1 24 0 1041 241 125 29 chr6 42642858 42643421 -146636133 - L2 LINE L2 -4 3309 2713 2047 123 3 23 chr6 42643460 42643769 -146635785 - AluJb SINE Alu -8 304 2 2361 77 3 0 chr6 42643773 42644071 -146635483 - AluY SINE Alu -12 299 1 537 163 10 0 chr6 42644072 42644170 -146635384 + MER20 DNA MER1_type 60 158 -61 375 130 0 0 chr6 42644174 42644228 -146635326 - MER20 DNA MER1_type -165 54 1 2485 229 172 46 chr6 42644230 42644515 -146635039 - L2 LINE L2 -694 2620 2372 2233 110 0 7 chr6 42644515 42644807 -146634747 - AluSx SINE Alu -22 290 1 2485 229 172 46 chr6 42644807 42645500 -146634054 - L2 LINE L2 -942 2372 1519 382 242 118 31 chr6 42645994 42646155 -146633399 - L2 LINE L2 -1 3312 3138 519 244 87 0 chr6 42646273 42646400 -146633154 + FLAM_A SINE Alu 1 138 -4 1019 105 19 49 chr6 42646453 42646615 -146632939 - AluJb SINE Alu 0 312 156 2551 57 0 7 chr6 42646708 42647009 -146632545 - AluY SINE Alu -12 299 1 2108 102 51 7 chr6 42647012 42647306 -146632248 - AluSx SINE Alu -5 307 1 2435 97 0 0 chr6 42647326 42647624 -146631930 - AluSg SINE Alu -12 298 1 2318 92 6 19 chr6 42648478 42648794 -146630760 - AluSx SINE Alu 0 312 1 461 189 0 0 chr6 42649062 42649136 -146630418 - MER2 DNA MER2_type 0 345 272 2026 104 42 7 chr6 42649138 42649425 -146630129 + AluSx SINE Alu 5 301 -11 2717 164 45 4 chr6 42649476 42649987 -146629567 - Tigger3b DNA MER2_type -2 1229 698 2413 78 0 20 chr6 42650674 42650980 -146628574 - AluY SINE Alu -11 300 1 431 128 86 8 chr6 42650980 42651097 -146628457 - Tigger3b DNA MER2_type -535 696 571 248 149 0 21 chr6 42651103 42651150 -146628404 + LTR56 LTR ERV1 349 394 -51 2341 106 0 0 chr6 42651156 42651458 -146628096 - AluY SINE Alu -5 306 5 3261 137 47 31 chr6 42651482 42651733 -146627821 - Tigger3b DNA MER2_type -2397 631 386 2455 67 0 13 chr6 42651733 42652032 -146627522 - AluY SINE Alu -16 295 1 3261 137 47 31 chr6 42652032 42652401 -146627153 - Tigger3b DNA MER2_type -2642 386 1 814 155 5 137 chr6 42652401 42652467 -146627087 - MER2 DNA MER2_type -155 190 117 2300 98 0 26 chr6 42652467 42652773 -146626781 + AluSq SINE Alu 1 298 -15 1760 125 12 0 chr6 42652774 42653014 -146626540 + AluSp SINE Alu 42 284 -29 814 155 5 137 chr6 42653014 42653164 -146626390 - MER2 DNA MER2_type -227 118 1 212 318 56 67 chr6 42654476 42654671 -146624883 + L2 LINE L2 2842 3034 -238 349 268 57 8 chr6 42655878 42656001 -146623553 + L2 LINE L2 2836 2964 -350 2036 172 0 0 chr6 42657154 42657457 -146622097 + AluJb SINE Alu 1 303 -9 719 253 54 17 chr6 42657457 42657698 -146621856 - L1MC4a LINE L1 -1946 5862 5613 344 282 43 103 chr6 42657697 42657931 -146621623 - L1MEd LINE L1 -5571 548 329 * 349 256 152 26 chr6 42658105 42658374 -146621180 - L1MC5 LINE L1 -262 7699 7397 665 253 86 8 chr6 42658465 42658710 -146620844 - L1MC5 LINE L1 -727 7234 6971 510 148 0 0 chr6 42658727 42658815 -146620739 - AluJ/FRAM SINE Alu -7 305 218 282 116 0 0 chr6 42658816 42658859 -146620695 - Alu SINE Alu -256 43 1 406 168 196 133 chr6 42658869 42658918 -146620636 - L1MC5 LINE L1 -1048 6913 6869 2411 54 24 3 chr6 42658918 42659213 -146620341 + AluY SINE Alu 1 301 -10 406 168 196 133 chr6 42659213 42659336 -146620218 - L1MC5 LINE L1 -1092 6869 6730 495 0 0 0 chr6 42659733 42659788 -146619766 + (TG)n Simple_repeat Simple_repeat 2 56 0 383 297 0 0 chr6 42660945 42661056 -146618498 + C-rich Low_complexity Low_complexity 1 111 0 22 35 0 0 chr6 42661286 42661315 -146618239 + GC_rich Low_complexity Low_complexity 1 29 0 2403 109 0 3 chr6 42661914 42662225 -146617329 + AluSg SINE Alu 1 310 0 468 288 60 38 chr6 42663033 42663217 -146616337 + MIR SINE MIR 74 261 -1 28 0 0 0 chr6 42666360 42666388 -146613166 + AT_rich Low_complexity Low_complexity 1 28 0 245 258 0 15 chr6 42670037 42670103 -146609451 + CT-rich Low_complexity Low_complexity 3 67 0 537 119 8 37 chr6 42670132 42670266 -146609288 + (TCC)n Simple_repeat Simple_repeat 1 130 0 333 314 0 38 chr6 42670371 42670556 -146608998 + G-rich Low_complexity Low_complexity 2 179 0 277 291 17 43 chr6 42670827 42670944 -146608610 + GA-rich Low_complexity Low_complexity 4 117 0 229 258 16 0 chr6 42675434 42675496 -146604058 + GA-rich Low_complexity Low_complexity 2 64 0 275 247 0 26 chr6 42676579 42676656 -146602898 + CT-rich Low_complexity Low_complexity 4 78 0 277 232 0 42 chr6 42677153 42677248 -146602306 + (TG)n Simple_repeat Simple_repeat 2 92 0 307 247 11 22 chr6 42677877 42677966 -146601588 + (CGG)n Simple_repeat Simple_repeat 3 90 0 221 239 28 0 chr6 42677968 42678039 -146601515 + (CCG)n Simple_repeat Simple_repeat 1 73 0 200 247 54 0 chr6 42677994 42678087 -146601467 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 * 234 252 34 34 chr6 42678142 42678261 -146601293 + G-rich Low_complexity Low_complexity 1 119 0 192 77 0 0 chr6 42678266 42678292 -146601262 + (CGG)n Simple_repeat Simple_repeat 3 28 0 225 325 12 0 chr6 42678999 42679082 -146600472 + GA-rich Low_complexity Low_complexity 3 86 0 281 282 17 17 chr6 42679651 42679768 -146599786 + (TG)n Simple_repeat Simple_repeat 2 118 0 230 245 0 0 chr6 42682353 42682402 -146597152 + GA-rich Low_complexity Low_complexity 1 49 0 246 62 0 0 chr6 42682496 42682528 -146597026 + (TG)n Simple_repeat Simple_repeat 1 32 0 30 27 0 0 chr6 42683719 42683756 -146595798 + GC_rich Low_complexity Low_complexity 1 37 0 198 322 17 0 chr6 42684246 42684305 -146595249 - L2 LINE L2 0 3313 3254 842 138 8 23 chr6 42684536 42684666 -146594888 - FLAM_C SINE Alu -3 130 3 1588 85 163 60 chr6 42684847 42685130 -146594424 + AluSx SINE Alu 1 312 0 251 292 45 11 chr6 42685867 42685956 -146593598 - L3 LINE CR1 -1 1576 1485 273 197 16 134 chr6 42685967 42686094 -146593460 + MIR3 SINE MIR 97 208 0 * 317 322 231 30 chr6 42686069 42686344 -146593210 - L3 LINE CR1 -336 1241 1022 2308 106 0 0 chr6 42686344 42686646 -146592908 - AluSx SINE Alu -10 302 1 317 322 231 30 chr6 42686646 42686799 -146592755 - L3 LINE CR1 -555 1022 727 1618 209 34 59 chr6 42686815 42687181 -146592373 - MLT1C LTR MaLR -5 462 109 2023 114 3 17 chr6 42687181 42687478 -146592076 - AluSq SINE Alu -20 293 1 1618 209 34 59 chr6 42687478 42687585 -146591969 - MLT1C LTR MaLR -358 109 1 315 259 76 44 chr6 42689033 42689191 -146590363 - L2 LINE L2 -23 3290 3128 2258 99 3 0 chr6 42689598 42689892 -146589662 + AluSp SINE Alu 1 295 -18 306 409 39 18 chr6 42689992 42690273 -146589281 - L2 LINE L2 -725 2589 2303 363 232 21 35 chr6 42690397 42690539 -146589015 + CT-rich Low_complexity Low_complexity 6 145 0 234 62 0 0 chr6 42690707 42690739 -146588815 + (TC)n Simple_repeat Simple_repeat 1 32 0 180 163 0 0 chr6 42691014 42691057 -146588497 + (CAGGG)n Simple_repeat Simple_repeat 3 45 0 441 54 0 0 chr6 42691118 42691174 -146588380 + (TG)n Simple_repeat Simple_repeat 1 56 0 306 293 0 30 chr6 42692531 42692695 -146586859 + CT-rich Low_complexity Low_complexity 3 161 0 246 62 0 0 chr6 42693448 42693480 -146586074 + (CCA)n Simple_repeat Simple_repeat 2 33 0 380 230 0 0 chr6 42694108 42694182 -146585372 - L2 LINE L2 -7 3306 3233 657 164 22 60 chr6 42695371 42695554 -146584000 + MER105 DNA DNA 28 203 -1 524 157 327 19 chr6 42695560 42695665 -146583889 + MER3 DNA MER1_type 2 73 -136 1683 150 0 73 chr6 42695665 42695992 -146583562 - AluJb SINE Alu -9 303 1 524 157 327 19 chr6 42695992 42696045 -146583509 + MER3 DNA MER1_type 73 209 0 242 254 0 0 chr6 42702962 42703021 -146576533 + C-rich Low_complexity Low_complexity 5 63 0 201 178 22 0 chr6 42703486 42703531 -146576023 + C-rich Low_complexity Low_complexity 4 49 0 224 321 168 0 chr6 42704106 42704283 -146575271 + MIR SINE MIR 40 253 -9 233 196 0 0 chr6 42705756 42705802 -146573752 + GA-rich Low_complexity Low_complexity 3 48 0 2023 108 0 11 chr6 42707780 42708088 -146571466 - AluY SINE Alu 0 305 1 2159 120 3 0 chr6 42708189 42708498 -146571056 - AluSx SINE Alu -2 310 1 888 143 0 0 chr6 42708500 42708626 -146570928 - AluJo/FLAM SINE Alu -175 127 2 349 339 0 8 chr6 42709251 42709372 -146570182 - LTR67 LTR ERVL -3 554 435 402 209 88 0 chr6 42710102 42710193 -146569361 + MIR SINE MIR 163 261 -1 7375 30 0 1 chr6 42710269 42711127 -146568427 + L1PA3 LINE L1 5296 6152 -3 2287 105 0 9 chr6 42711499 42711814 -146567740 - AluSx SINE Alu 0 312 1 421 317 209 11 chr6 42712003 42712372 -146567182 + L2 LINE L2 2324 2765 -549 454 165 304 0 chr6 42712624 42712739 -146566815 + L1PA16 LINE L1 6006 6155 -11 2106 117 0 0 chr6 42712898 42713204 -146566350 - AluSx SINE Alu 0 306 1 718 179 0 45 chr6 42713207 42713341 -146566213 - AluJo/FLAM SINE Alu -182 130 3 758 322 114 20 chr6 42713556 42714061 -146565493 - L2 LINE L2 -417 2897 2338 2166 101 45 0 chr6 42714061 42714348 -146565206 + AluSx SINE Alu 1 300 -12 758 322 114 20 chr6 42714348 42714379 -146565175 - L2 LINE L2 -976 2338 2311 534 194 75 0 chr6 42714408 42714542 -146565012 - Cheshire DNA MER1_type -2 2418 2275 998 118 20 0 chr6 42714544 42714697 -146564857 - MSTC LTR MaLR -51 377 222 3063 125 91 65 chr6 42714701 42714817 -146564737 - Cheshire DNA MER1_type -146 2274 2162 2267 113 0 0 chr6 42714817 42715117 -146564437 - AluSx SINE Alu -12 300 1 3063 125 91 65 chr6 42715117 42715289 -146564265 - Cheshire DNA MER1_type -258 2162 1996 2790 82 3 0 chr6 42715289 42715641 -146563913 + THE1A LTR MaLR 3 355 0 12160 90 5 0 chr6 42715641 42717214 -146562340 + THE1A-int LTR MaLR 1 1580 0 2582 87 17 22 chr6 42717214 42717571 -146561983 + THE1A LTR MaLR 1 355 0 3063 125 91 65 chr6 42717571 42717683 -146561871 - Cheshire DNA MER1_type -424 1996 1888 1829 145 10 24 chr6 42717683 42717972 -146561582 - AluJb SINE Alu -17 295 11 3063 125 91 65 chr6 42717972 42718240 -146561314 - Cheshire DNA MER1_type -532 1888 1585 1848 160 3 10 chr6 42718240 42718540 -146561014 + AluSx SINE Alu 1 298 -14 2205 101 6 15 chr6 42718546 42718872 -146560682 + L1PA15 LINE L1 5838 6160 -5 1982 178 0 6 chr6 42718872 42719214 -146560340 - MLT2C1 LTR ERVL -57 340 1 610 203 0 8 chr6 42719230 42719357 -146560197 - Cheshire DNA MER1_type -919 1501 1376 1143 183 193 19 chr6 42719357 42719668 -146559886 - MLT1A1 LTR MaLR 0 365 1 * 3783 174 36 38 chr6 42719668 42720451 -146559103 - Cheshire DNA MER1_type -1053 1367 584 2387 81 0 3 chr6 42720451 42720747 -146558807 - AluY SINE Alu -16 295 1 3783 174 36 38 chr6 42720747 42720788 -146558766 - Cheshire DNA MER1_type -1836 584 543 2246 105 6 25 chr6 42720788 42721102 -146558452 - AluSx SINE Alu -4 308 1 3783 174 36 38 chr6 42721102 42721128 -146558426 - Cheshire DNA MER1_type -1877 543 518 1879 176 10 0 chr6 42721131 42721438 -146558116 + AluJb SINE Alu 1 310 -2 476 59 0 0 chr6 42721461 42721529 -146558025 + L1PB1 LINE L1 6084 6151 0 693 152 25 61 chr6 42721559 42721756 -146557798 + L1MC5 LINE L1 7334 7523 -438 294 29 0 0 chr6 42721764 42721799 -146557755 + U2 snRNA snRNA 1 35 -153 854 203 13 0 chr6 42721805 42721963 -146557591 + FRAM SINE Alu 1 160 -16 339 221 7 93 chr6 42721963 42722103 -146557451 + L1MC5 LINE L1 7522 7649 -312 2070 92 0 66 chr6 42722104 42722407 -146557147 - AluSp SINE Alu -4 309 27 2559 47 3 0 chr6 42722518 42722814 -146556740 + AluY SINE Alu 1 297 -14 2402 67 0 17 chr6 42722825 42723122 -146556432 + AluY SINE Alu 1 292 -19 664 224 0 8 chr6 42723131 42723256 -146556298 + FLAM_A SINE Alu 2 125 -8 456 211 60 70 chr6 42723551 42723736 -146555818 + L1MC5 LINE L1 5831 6013 -1795 350 129 0 16 chr6 42723846 42723908 -146555646 + AluJ SINE Alu 67 127 -175 992 144 39 0 chr6 42723954 42724107 -146555447 + AluJ SINE Alu 132 290 -22 210 37 0 0 chr6 42724107 42724134 -146555420 + (GA)n Simple_repeat Simple_repeat 2 28 0 2435 93 0 0 chr6 42724156 42724456 -146555098 - AluSc SINE Alu -9 300 1 2208 106 11 0 chr6 42724651 42724973 -146554581 - AluSq SINE Alu 0 325 1 592 272 55 86 chr6 42724974 42725105 -146554449 + L1MC5 LINE L1 6495 6628 -1333 2318 103 0 13 chr6 42725105 42725417 -146554137 + AluY SINE Alu 1 308 -3 592 272 55 86 chr6 42725417 42725437 -146554117 + L1MC5 LINE L1 6628 6647 -1314 1810 164 13 17 chr6 42725437 42725736 -146553818 + AluJb SINE Alu 1 298 -14 592 272 55 86 chr6 42725736 42725770 -146553784 + L1MC5 LINE L1 6647 6681 -1280 207 0 0 0 chr6 42725770 42725793 -146553761 + (CA)n Simple_repeat Simple_repeat 2 24 0 592 272 55 86 chr6 42725793 42725998 -146553556 + L1MC5 LINE L1 6681 6891 -1070 2229 104 23 10 chr6 42725998 42726306 -146553248 + AluSx SINE Alu 1 312 0 592 272 55 86 chr6 42726306 42726574 -146552980 + L1MC5 LINE L1 6891 7046 -915 1896 153 0 29 chr6 42726574 42726882 -146552672 + AluJb SINE Alu 1 299 -13 592 272 55 86 chr6 42726882 42726974 -146552580 + L1MC5 LINE L1 7046 7139 -822 2117 119 17 10 chr6 42726998 42727291 -146552263 - AluSx SINE Alu -17 295 1 283 288 86 23 chr6 42727345 42727602 -146551952 + L1MC4 LINE L1 7150 7422 -620 2326 101 0 22 chr6 42728468 42728785 -146550769 - AluSg SINE Alu 0 310 1 1630 191 32 67 chr6 42728876 42729103 -146550451 - MLT1B LTR MaLR 0 390 182 2133 103 31 0 chr6 42729103 42729393 -146550161 - AluSx SINE Alu -13 299 1 1630 191 32 67 chr6 42729393 42729568 -146549986 - MLT1B LTR MaLR -208 182 2 465 247 67 0 chr6 42729927 42730077 -146549477 - L1M4 LINE L1 -1353 4793 4634 354 248 119 0 chr6 42730080 42730181 -146549373 - L1M4 LINE L1 -1544 4602 4490 1211 99 0 25 chr6 42730186 42730378 -146549176 - AluSg/x SINE Alu 0 310 131 1754 181 38 91 chr6 42730393 42730567 -146548987 - L1MA9 LINE L1 -30 6282 6100 2223 96 7 10 chr6 42730567 42730869 -146548685 + AluSx SINE Alu 1 301 -11 1754 181 38 91 chr6 42730869 42731252 -146548302 - L1MA9 LINE L1 -212 6100 5755 1687 171 16 3 chr6 42731249 42731558 -146547996 + L1M2 LINE L1 5409 5721 -591 * 1633 143 0 123 chr6 42731571 42731715 -146547839 + AluJo SINE Alu 1 80 -232 2152 125 0 0 chr6 42731715 42732004 -146547550 - AluSx SINE Alu -9 303 15 1633 143 0 123 chr6 42732004 42732201 -146547353 + AluJo SINE Alu 80 300 -12 3136 163 54 12 chr6 42732208 42732888 -146546666 - L1MB4 LINE L1 0 6678 5772 534 70 0 0 chr6 42732892 42732963 -146546591 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1202 104 0 25 chr6 42732968 42733131 -146546423 - AluSp SINE Alu -30 283 125 339 109 0 0 chr6 42733135 42733190 -146546364 - L1MB4 LINE L1 -883 5761 5707 * 351 176 19 102 chr6 42733169 42733277 -146546277 - L1M4 LINE L1 -4968 1574 1476 1154 176 7 26 chr6 42733290 42733562 -146545992 - L1MB4 LINE L1 -941 5703 5437 * 1888 188 65 2 chr6 42733548 42733995 -146545559 - L1MB4 LINE L1 -4606 2040 1566 7928 18 0 6 chr6 42733995 42735115 -146544439 - L1PA3 LINE L1 0 6155 5041 11002 33 5 116 chr6 42735120 42736678 -146542876 - SVA Other Other 0 1386 2 242 203 0 32 chr6 42736687 42736810 -146542744 + GA-rich Low_complexity Low_complexity 3 121 0 456 203 7 22 chr6 42736811 42736949 -146542605 - L1MB4 LINE L1 -4963 1579 1444 194 0 0 37 chr6 42736950 42736977 -146542577 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 622 200 64 0 chr6 42736977 42737102 -146542452 - AluJo/FRAM SINE Alu -1 311 179 1263 167 5 0 chr6 42737102 42737300 -146542254 + AluJb SINE Alu 109 307 -5 1395 103 0 0 chr6 42737336 42737510 -146542044 - AluSq SINE Alu -20 293 120 1188 163 5 15 chr6 42737520 42737722 -146541832 - AluSg/x SINE Alu 0 312 113 1490 102 0 15 chr6 42737722 42737927 -146541627 - AluSx SINE Alu -110 202 1 447 290 85 45 chr6 42737930 42738132 -146541422 - L1MC4a LINE L1 -985 6823 6610 207 0 0 0 chr6 42738132 42738155 -146541399 + (TG)n Simple_repeat Simple_repeat 2 24 0 447 290 85 45 chr6 42738155 42738176 -146541378 - L1MC4a LINE L1 -1198 6610 6591 1810 164 13 17 chr6 42738189 42738488 -146541066 - AluJb SINE Alu -14 298 1 2386 85 3 0 chr6 42738508 42738815 -146540739 - AluY SINE Alu -3 308 1 2450 91 0 0 chr6 42738815 42739122 -146540432 - AluSc SINE Alu -2 307 1 2162 99 3 39 chr6 42739125 42739294 -146540260 - AluSq SINE Alu -12 301 128 2287 109 6 0 chr6 42739294 42739605 -146539949 - AluSp SINE Alu 0 313 1 2168 61 0 11 chr6 42739607 42739870 -146539684 - AluY SINE Alu -11 300 41 2162 99 3 39 chr6 42739870 42740009 -146539545 - AluSq SINE Alu -186 127 1 1489 152 51 70 chr6 42740009 42740325 -146539229 - AluJo SINE Alu -2 310 1 1898 149 0 36 chr6 42740328 42740636 -146538918 - AluJo SINE Alu -15 297 1 2261 99 0 7 chr6 42740793 42741086 -146538468 - AluSc SINE Alu -18 291 1 242 250 177 8 chr6 42741098 42741222 -146538332 + MIR SINE MIR 104 248 -14 1970 77 0 0 chr6 42742360 42742595 -146536959 - AluSg SINE Alu -14 296 62 355 323 106 18 chr6 42743265 42743482 -146536072 + MIR SINE MIR 17 252 -10 1081 198 18 18 chr6 42743864 42744091 -146535463 + AluJo SINE Alu 75 301 -11 697 178 7 22 chr6 42744134 42744269 -146535285 - FLAM_C SINE Alu 0 133 1 1754 137 11 32 chr6 42744509 42744793 -146534761 + AluJb SINE Alu 21 298 -14 335 245 98 44 chr6 42744946 42745200 -146534354 - L1ME LINE L1 -660 5506 5243 * 782 121 25 126 chr6 42745197 42745253 -146534301 - L1MB7 LINE L1 -12 6172 6112 894 130 15 0 chr6 42745253 42745384 -146534170 - FLAM_C SINE Alu 0 133 1 782 121 25 126 chr6 42745384 42745525 -146534029 - L1MB7 LINE L1 -72 6112 5995 839 96 0 17 chr6 42745525 42745640 -146533914 - AluSp/q SINE Alu -19 294 182 489 138 46 0 chr6 42745648 42745735 -146533819 - L1MB7 LINE L1 -200 5984 5894 964 157 7 0 chr6 42745735 42745875 -146533679 - FRAM SINE Alu -36 140 1 2216 107 7 7 chr6 42746045 42746354 -146533200 + AluY SINE Alu 1 309 -2 702 246 14 0 chr6 42746376 42746518 -146533036 - AluJ SINE Alu -31 281 138 6857 147 154 38 chr6 42746518 42748032 -146531522 - pTR5 LTR ERV1 -6 2432 743 2294 106 0 10 chr6 42748049 42748351 -146531203 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 42748351 42748376 -146531178 + AT_rich Low_complexity Low_complexity 1 25 0 985 131 0 0 chr6 42748402 42748532 -146531022 - AluJ SINE Alu -171 141 12 360 261 62 66 chr6 42748539 42748573 -146530981 - L1ME LINE L1 -1108 5038 5005 2273 76 35 0 chr6 42748573 42748862 -146530692 - AluY SINE Alu -12 299 1 360 261 62 66 chr6 42748862 42749034 -146530520 - L1ME LINE L1 -1141 5005 4836 2144 136 3 13 chr6 42749041 42749350 -146530204 - AluSx SINE Alu -6 306 1 656 286 15 20 chr6 42749350 42749541 -146530013 + L2 LINE L2 2878 3069 -244 657 126 0 39 chr6 42749553 42749656 -146529898 + AluJb SINE Alu 5 103 -209 902 94 6 126 chr6 42749674 42749833 -146529721 - AluSq/x SINE Alu -172 140 1 749 184 6 42 chr6 42749835 42750003 -146529551 + L2 LINE L2 3102 3263 -50 618 193 88 0 chr6 42750025 42750139 -146529415 + FLAM_A SINE Alu 1 124 -9 1215 124 0 0 chr6 42750666 42750835 -146528719 - AluSq SINE Alu -11 302 134 2256 113 3 0 chr6 42750835 42751146 -146528408 - AluSp SINE Alu -1 312 1 2372 103 6 3 chr6 42751292 42751603 -146527951 - AluSx SINE Alu 0 312 1 366 168 329 7 chr6 42751606 42751743 -146527811 + MER2 DNA MER2_type 165 345 0 2415 80 0 19 chr6 42752346 42752658 -146526896 - AluY SINE Alu -5 306 1 2339 97 0 0 chr6 42752666 42752965 -146526589 - AluSc SINE Alu -9 300 2 511 220 43 35 chr6 42753157 42753298 -146526256 + LTR16C LTR ERVL 92 233 -258 673 192 112 0 chr6 42753299 42753424 -146526130 + FRAM SINE Alu 1 139 -37 2533 73 3 0 chr6 42753424 42753727 -146525827 - AluSp SINE Alu -9 304 1 2175 91 4 7 chr6 42753728 42754004 -146525550 - AluSx SINE Alu -37 275 1 1823 150 14 7 chr6 42754027 42754314 -146525240 + AluJo SINE Alu 1 289 -23 556 247 134 4 chr6 42754339 42754570 -146524984 + LTR16C LTR ERVL 231 491 0 193 351 0 0 chr6 42754700 42754777 -146524777 - MIR SINE MIR -18 244 168 2671 126 20 48 chr6 42754777 42755015 -146524539 - MSTB LTR MaLR 0 426 204 2330 102 0 7 chr6 42755015 42755310 -146524244 - AluSx SINE Alu -19 293 1 2671 126 20 48 chr6 42755310 42755509 -146524045 - MSTB LTR MaLR -222 204 1 8934 156 44 30 chr6 42755512 42755834 -146523720 - MSTB-int LTR MaLR -3 1648 1332 2061 116 3 0 chr6 42755834 42756153 -146523401 - AluSx SINE Alu 0 320 1 8934 156 44 30 chr6 42756153 42756914 -146522640 - MSTB-int LTR MaLR -319 1332 531 2223 110 3 3 chr6 42756914 42757214 -146522340 + AluSq SINE Alu 1 300 -13 8934 156 44 30 chr6 42757214 42757753 -146521801 - MSTB-int LTR MaLR -1120 531 1 2204 140 27 45 chr6 42757759 42758134 -146521420 - MSTB LTR MaLR -2 424 55 2537 79 0 0 chr6 42758134 42758437 -146521117 - AluSg SINE Alu -5 305 3 2204 140 27 45 chr6 42758437 42758462 -146521092 - MSTB LTR MaLR -371 55 31 249 289 89 11 chr6 42758475 42758565 -146520989 - MIR SINE MIR -88 174 78 1500 18 0 6 chr6 42758570 42758736 -146520818 + AluYa5 SINE Alu 1 165 -146 504 170 10 10 chr6 42758859 42758959 -146520595 + FRAM SINE Alu 64 163 -13 299 145 32 0 chr6 42758988 42759050 -146520504 - L1M LINE L1 -863 5320 5257 2333 78 17 7 chr6 42759199 42759495 -146520059 - AluSp SINE Alu -14 299 1 2231 113 3 16 chr6 42759504 42759813 -146519741 - AluSg SINE Alu 0 310 6 2484 72 0 0 chr6 42760007 42760298 -146519256 - AluSg SINE Alu -19 291 1 240 299 13 13 chr6 42760487 42760564 -146518990 + MLT1J LTR MaLR 137 213 -298 384 184 219 44 chr6 42760581 42760695 -146518859 + MER5A DNA MER1_type 49 182 -7 665 209 20 70 chr6 42760722 42760923 -146518631 + MLT1J LTR MaLR 239 429 -82 1954 174 0 0 chr6 42761563 42761857 -146517697 + AluJb SINE Alu 1 294 -18 2489 87 0 0 chr6 42761868 42762168 -146517386 + AluSc SINE Alu 1 300 -9 1667 142 110 14 chr6 42762223 42762504 -146517050 + AluSg1 SINE Alu 1 308 -1 2226 147 0 0 chr6 42762519 42762831 -146516723 + AluSx SINE Alu 1 312 0 346 298 71 48 chr6 42762853 42763021 -146516533 + L1M4 LINE L1 4243 4414 -1732 2152 125 7 3 chr6 42763021 42763324 -146516230 + AluSq SINE Alu 1 304 -9 401 275 96 62 chr6 42763387 42763417 -146516137 + MIR SINE MIR 79 107 -155 2324 75 0 0 chr6 42763417 42763695 -146515859 - AluSp SINE Alu -18 295 18 401 275 96 62 chr6 42763695 42763842 -146515712 + MIR SINE MIR 107 262 0 1797 152 14 3 chr6 42764947 42765230 -146514324 + AluJo SINE Alu 10 295 -17 1567 172 62 10 chr6 42765914 42766205 -146513349 - AluJb SINE Alu -6 306 1 1506 126 9 0 chr6 42766266 42766489 -146513065 + AluSg/x SINE Alu 83 307 -3 1724 88 4 28 chr6 42766657 42766908 -146512646 + AluY SINE Alu 1 245 -66 961 87 0 0 chr6 42766908 42767035 -146512519 + AluY SINE Alu 177 303 -8 1073 244 106 29 chr6 42768756 42769133 -146510421 + MLT1C LTR MaLR 59 464 -3 207 383 9 0 chr6 42769148 42769263 -146510291 + L2 LINE L2 1918 2033 -1281 206 259 35 0 chr6 42769351 42769409 -146510145 + L2 LINE L2 2188 2247 -1067 2141 103 10 0 chr6 42769523 42769823 -146509731 + AluSx SINE Alu 1 303 -9 2178 125 0 0 chr6 42770134 42770446 -146509108 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 42770653 42770674 -146508880 + GC_rich Low_complexity Low_complexity 1 21 0 345 238 42 95 chr6 42771959 42772148 -146507406 - MIR3 SINE MIR 0 208 30 4173 188 48 44 chr6 42772159 42773109 -146506445 + LTR13 LTR ERVK 1 954 0 233 282 42 0 chr6 42774082 42774153 -146505401 + L1MC4 LINE L1 7595 7668 -374 2251 86 7 0 chr6 42774160 42774452 -146505102 - AluSc SINE Alu -15 294 1 1266 113 0 0 chr6 42774558 42774735 -146504819 + AluSc SINE Alu 133 309 0 2117 109 0 0 chr6 42775233 42775550 -146504004 + AluSx SINE Alu 1 317 0 2007 161 73 3 chr6 42775556 42775897 -146503657 + MLT1A1 LTR MaLR 1 365 0 1886 161 3 7 chr6 42776077 42776381 -146503173 + AluJo SINE Alu 1 303 -9 198 310 121 9 chr6 42776733 42776849 -146502705 - MIR SINE MIR -1 261 133 194 264 44 11 chr6 42778080 42778171 -146501383 + L2 LINE L2 3152 3245 -68 2365 247 86 47 chr6 42778196 42778792 -146500762 - L2 LINE L2 0 3313 2741 1966 109 0 48 chr6 42778792 42779103 -146500451 + AluSx SINE Alu 1 296 -16 2365 247 86 47 chr6 42779103 42779690 -146499864 - L2 LINE L2 -572 2741 2093 280 273 333 0 chr6 42779740 42779872 -146499682 + MIR SINE MIR 31 206 -56 1366 203 221 6 chr6 42779898 42780247 -146499307 - MER21B LTR ERV1 -123 740 317 189 74 0 0 chr6 42780249 42780276 -146499278 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 980 149 0 6 chr6 42780277 42780422 -146499132 - AluSg/x SINE Alu -33 277 132 1953 89 3 70 chr6 42780422 42780737 -146498817 - AluSx SINE Alu -18 294 1 980 149 0 6 chr6 42780737 42780752 -146498802 - AluSg/x SINE Alu -178 132 118 261 0 0 0 chr6 42780778 42780807 -146498747 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2083 104 0 0 chr6 42780809 42781087 -146498467 - AluSg SINE Alu -28 282 5 666 197 109 49 chr6 42781091 42781274 -146498280 - MER21B LTR ERV1 -575 288 95 409 169 24 24 chr6 42781393 42781476 -146498078 - MER21B LTR ERV1 -778 85 3 855 83 0 0 chr6 42781886 42781994 -146497560 + AluSg1 SINE Alu 1 108 -201 310 339 86 27 chr6 42782107 42782177 -146497377 + MIR SINE MIR 66 130 -132 2217 226 42 22 chr6 42782177 42782727 -146496827 - MER34B LTR ERV1 0 565 5 310 339 86 27 chr6 42782727 42782842 -146496712 + MIR SINE MIR 130 262 0 2252 82 0 3 chr6 42783210 42783504 -146496050 - AluSc SINE Alu -16 293 1 228 239 0 0 chr6 42784914 42784960 -146494594 + MIR SINE MIR 17 62 -200 801 271 29 83 chr6 42784960 42785381 -146494173 - MLT1J LTR MaLR -3 508 111 256 128 0 0 chr6 42785480 42785519 -146494035 + MIR SINE MIR 70 108 -154 233 234 31 0 chr6 42787415 42787479 -146492075 + (CA)n Simple_repeat Simple_repeat 1 66 0 3136 188 46 40 chr6 42787527 42788249 -146491305 + MER21B LTR ERV1 1 726 -137 1788 195 37 81 chr6 42788249 42788573 -146490981 - MER49 LTR ERV1 0 903 566 1461 165 27 0 chr6 42788573 42788834 -146490720 - AluJo SINE Alu -11 301 34 1788 195 37 81 chr6 42788834 42789172 -146490382 - MER49 LTR ERV1 -337 566 1 307 246 109 58 chr6 42789316 42789454 -146490100 + MLT1J LTR MaLR 5 149 -393 863 212 156 71 chr6 42789991 42790317 -146489237 - MLT1J LTR MaLR -152 359 6 407 244 87 9 chr6 42791350 42791465 -146488089 - MIR SINE MIR -116 146 23 2219 104 3 3 chr6 42791643 42791950 -146487604 + AluSq SINE Alu 1 307 -6 342 278 16 48 chr6 42792002 42792128 -146487426 + L2 LINE L2 2915 3036 -236 638 204 53 13 chr6 42792129 42792281 -146487273 + L1ME LINE L1 5540 5697 -469 * 2694 180 75 6 chr6 42792273 42792800 -146486754 - L1M4 LINE L1 -374 5804 5315 2048 125 3 49 chr6 42792800 42793127 -146486427 - AluSx SINE Alu 0 312 1 2694 180 75 6 chr6 42793127 42793593 -146485961 - L1M4 LINE L1 -863 5315 4747 840 309 93 14 chr6 42793645 42793998 -146485556 - MER90 LTR ERV1 -2 573 193 241 309 49 0 chr6 42794264 42794345 -146485209 + MIR3 SINE MIR 114 198 -10 360 0 0 0 chr6 42795194 42795234 -146484320 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 42795235 42795255 -146484299 + (GA)n Simple_repeat Simple_repeat 1 20 0 440 229 165 58 chr6 42796766 42796954 -146482600 - MER63A DNA MER1_type 0 210 3 564 207 73 33 chr6 42797790 42797940 -146481614 - MLT1J LTR MaLR -163 348 193 2172 116 3 0 chr6 42798651 42798961 -146480593 - AluSx SINE Alu -1 311 1 2302 140 93 20 chr6 42799656 42800055 -146479499 - MSTC LTR MaLR 0 428 1 426 319 26 44 chr6 42800801 42801027 -146478527 + L2 LINE L2 3092 3313 0 198 179 0 0 chr6 42802203 42802259 -146477295 + CT-rich Low_complexity Low_complexity 1 56 0 200 341 0 67 chr6 42802570 42802705 -146476849 + L2 LINE L2 2967 3092 -180 333 190 254 14 chr6 42803068 42803210 -146476344 + MLT1J LTR MaLR 236 411 -100 7386 87 8 21 chr6 42804840 42805912 -146473642 + MER11C LTR ERVK 1 1057 -14 1809 188 108 22 chr6 42807317 42807733 -146471821 - MER66A LTR ERV1 0 478 27 584 280 107 48 chr6 42809290 42809626 -146469928 - L2 LINE L2 0 3313 2958 240 35 0 0 chr6 42812873 42812902 -146466652 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 660 276 81 18 chr6 42813941 42814327 -146465227 - L1ME3A LINE L1 -1 6161 5718 288 351 84 28 chr6 42815026 42815311 -146464243 + L2 LINE L2 1860 2160 -1154 232 308 56 0 chr6 42815925 42816032 -146463522 - LTR33 LTR ERVL -237 284 172 371 105 0 0 chr6 42819573 42819630 -146459924 + L2 LINE L2 3257 3313 0 302 338 117 37 chr6 42820857 42821209 -146458345 - L1ME4a LINE L1 -194 5927 5548 356 289 175 6 chr6 42821697 42821863 -146457691 - L2 LINE L2 0 3313 3120 222 316 29 52 chr6 42827519 42827655 -146451899 - L2 LINE L2 -7 3306 3174 922 150 41 77 chr6 42827672 42827892 -146451662 + REP3 LTR ERV 26 237 -325 191 154 0 19 chr6 42829111 42829163 -146450391 + C-rich Low_complexity Low_complexity 3 53 0 5850 68 17 11 chr6 42831114 42831875 -146447679 - MER4E LTR ERV1 0 766 1 187 357 12 24 chr6 42832553 42832637 -146446917 + L2 LINE L2 3144 3226 -46 318 203 0 0 chr6 42834084 42834143 -146445411 - MIR3 SINE MIR -41 167 109 549 335 45 0 chr6 42834798 42834974 -146444580 - MIR3 SINE MIR -11 197 14 1181 130 0 0 chr6 42835816 42835985 -146443569 - AluSc SINE Alu -13 296 128 236 294 160 17 chr6 42836792 42836911 -146442643 + MIR3 SINE MIR 2 137 -71 2772 150 14 0 chr6 42838102 42838523 -146441031 - MER1A DNA MER1_type -102 427 1 2178 89 0 0 chr6 42839243 42839525 -146440029 + AluSx SINE Alu 1 282 -30 297 68 0 0 chr6 42839525 42839569 -146439985 + (CTAAA)n Simple_repeat Simple_repeat 3 46 0 867 88 0 16 chr6 42840213 42840338 -146439216 - AluSg/x SINE Alu -14 296 174 4772 42 24 2 chr6 42841078 42841656 -146437898 - LTR10C LTR ERV1 0 591 1 203 120 13 67 chr6 42841876 42841951 -146437603 + (GGGGA)n Simple_repeat Simple_repeat 4 74 0 1477 175 39 111 chr6 42841983 42842468 -146437086 - LTR7 LTR ERV1 0 450 1 228 313 172 30 chr6 42842767 42842901 -146436653 + MIR3 SINE MIR 36 188 -20 265 330 0 22 chr6 42846090 42846181 -146433373 - L2 LINE L2 -1 3312 3224 393 86 0 0 chr6 42847233 42847291 -146432263 + (CA)n Simple_repeat Simple_repeat 2 59 0 189 0 0 0 chr6 42847415 42847436 -146432118 + (CA)n Simple_repeat Simple_repeat 2 22 0 234 250 167 0 chr6 42848077 42848149 -146431405 + MIR SINE MIR 84 167 -95 4974 80 22 1 chr6 42848185 42848832 -146430722 - PABL_A LTR ERV1 0 660 1 346 228 70 18 chr6 42850391 42850505 -146429049 - MIR3 SINE MIR -2 206 87 213 211 0 19 chr6 42851225 42851277 -146428277 + G-rich Low_complexity Low_complexity 4 54 0 181 119 48 0 chr6 42852117 42852159 -146427395 + CT-rich Low_complexity Low_complexity 4 47 0 186 133 0 0 chr6 42852985 42853015 -146426539 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 546 167 0 0 chr6 42853440 42853530 -146426024 - AluJ/FRAM SINE Alu -6 306 217 * 631 171 103 0 chr6 42853528 42853645 -146425909 - AluJo/FLAM SINE Alu -182 130 2 2300 84 0 7 chr6 42854035 42854343 -146425211 - AluSg SINE Alu 0 310 5 422 318 169 38 chr6 42854350 42854746 -146424808 + LTR67 LTR ERVL 108 555 -2 188 244 0 0 chr6 42854769 42854810 -146424744 - MIR SINE MIR -159 103 63 2265 109 39 8 chr6 42855657 42856016 -146423538 + THE1C LTR MaLR 6 375 0 292 273 36 57 chr6 42856380 42856574 -146422980 - MER112 DNA MER1_type -32 228 39 182 193 18 0 chr6 42856783 42856840 -146422714 + (CA)n Simple_repeat Simple_repeat 2 59 0 3722 189 160 59 chr6 42856893 42857820 -146421734 - LTR28 LTR ERV1 0 1020 1 335 244 0 6 chr6 42857824 42858004 -146421550 + (CA)n Simple_repeat Simple_repeat 1 179 0 235 216 0 0 chr6 42858016 42858067 -146421487 + (CA)n Simple_repeat Simple_repeat 1 51 0 283 365 21 7 chr6 42859404 42859549 -146420005 + MLT1K LTR MaLR 134 280 -308 369 250 69 62 chr6 42859730 42859874 -146419680 - MIR SINE MIR -10 252 108 314 316 40 46 chr6 42860667 42860841 -146418713 + LTR67 LTR ERVL 122 294 -263 284 301 66 24 chr6 42860991 42861157 -146418397 + LTR67 LTR ERVL 383 555 -2 399 290 82 27 chr6 42861437 42861620 -146417934 - LTR67 LTR ERVL -11 546 354 411 312 57 6 chr6 42862088 42862245 -146417309 - LTR67 LTR ERVL -35 522 358 317 319 83 38 chr6 42862375 42862532 -146417022 - LTR67 LTR ERVL -390 167 4 197 284 15 15 chr6 42862667 42862734 -146416820 + L2 LINE L2 3205 3271 -1 452 335 76 10 chr6 42862966 42863163 -146416391 + MIR SINE MIR 24 233 -29 448 279 145 12 chr6 42863194 42863366 -146416188 - MIR SINE MIR -39 223 29 255 279 25 0 chr6 42863575 42863654 -146415900 - L2 LINE L2 -182 3090 3010 694 221 19 77 chr6 42863666 42863874 -146415680 - L1ME1 LINE L1 -5 6161 5966 21 57 0 0 chr6 42863941 42863976 -146415578 + AT_rich Low_complexity Low_complexity 1 35 0 204 301 41 0 chr6 42866325 42866398 -146413156 + MIR3 SINE MIR 104 179 -29 207 0 0 0 chr6 42867940 42867963 -146411591 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2104 99 0 3 chr6 42867965 42868248 -146411306 - AluSx SINE Alu -30 282 1 626 201 67 27 chr6 42868249 42868398 -146411156 - MIR SINE MIR -97 165 11 570 304 110 13 chr6 42868412 42868639 -146410915 - MIR SINE MIR -1 261 13 2090 127 10 16 chr6 42869332 42869646 -146409908 - AluSx SINE Alu 0 312 1 270 258 0 0 chr6 42870686 42870752 -146408802 - L2 LINE L2 -330 2983 2918 287 327 91 0 chr6 42871802 42871912 -146407642 - MIR3 SINE MIR -80 128 9 295 282 12 12 chr6 42872247 42872332 -146407222 - MIR SINE MIR -149 113 29 309 242 178 37 chr6 42872391 42872592 -146406962 - MIR3 SINE MIR -3 205 3 236 365 56 47 chr6 42872742 42872956 -146406598 + MIR SINE MIR 41 256 -6 215 235 103 0 chr6 42873858 42873926 -146405628 - L2 LINE L2 -48 3224 3150 523 244 47 0 chr6 42874098 42874225 -146405329 - MIR3 SINE MIR -25 183 51 1978 93 97 4 chr6 42874604 42874882 -146404672 - AluSx SINE Alu -8 304 1 497 302 13 25 chr6 42874890 42875049 -146404505 + MER5A DNA MER1_type 5 161 -28 3112 236 35 8 chr6 42875076 42876074 -146403480 - L1ME3A LINE L1 -24 6146 5121 381 186 172 48 chr6 42876899 42877044 -146402510 + MER103 DNA DNA 3 165 -1 229 281 0 62 chr6 42877438 42877534 -146402020 + GA-rich Low_complexity Low_complexity 5 94 0 473 232 77 41 chr6 42877534 42877641 -146401913 - LTR33 LTR ERVL -17 504 385 2117 129 3 0 chr6 42877641 42877943 -146401611 + AluSq SINE Alu 1 303 -10 473 232 77 41 chr6 42877943 42878029 -146401525 - LTR33 LTR ERVL -136 385 304 2191 150 36 22 chr6 42878033 42878392 -146401162 - THE1B LTR MaLR 0 364 1 295 186 0 0 chr6 42878470 42878529 -146401025 - LTR33 LTR ERVL -346 175 117 299 269 21 21 chr6 42879855 42879948 -146399606 - L2 LINE L2 -174 3098 3006 217 220 85 0 chr6 42880105 42880164 -146399390 - L2 LINE L2 -217 3055 2992 212 329 66 0 chr6 42881180 42881256 -146398298 - MIR SINE MIR -123 139 59 1127 223 129 59 chr6 42884479 42884951 -146394603 + MLT1D LTR MaLR 1 505 0 761 259 35 24 chr6 42884962 42885217 -146394337 + MLT1K LTR MaLR 330 587 -1 238 192 103 26 chr6 42885224 42885302 -146394252 + L1ME LINE L1 5581 5664 -457 307 281 246 0 chr6 42885304 42885418 -146394136 + L1ME LINE L1 5688 5829 -292 482 51 0 0 chr6 42885548 42885607 -146393947 - Alu SINE Alu -19 290 232 589 350 98 66 chr6 42885667 42886163 -146393391 - L1MC4a LINE L1 -1744 6064 5535 1968 87 11 35 chr6 42886163 42886449 -146393105 + AluSc SINE Alu 1 279 -30 589 350 98 66 chr6 42886449 42886696 -146392858 - L1MC4a LINE L1 -2273 5535 5297 336 265 43 17 chr6 42886886 42887003 -146392551 + MLT1K LTR MaLR 180 299 -289 352 268 138 0 chr6 42887933 42888071 -146391483 - MIR3 SINE MIR -22 186 30 203 343 110 20 chr6 42888260 42888406 -146391148 - L2 LINE L2 -86 3186 3028 10055 25 3 171 chr6 42888600 42890265 -146389289 + SVA Other Other 1 1386 0 260 333 0 0 chr6 42890347 42890428 -146389126 + (CA)n Simple_repeat Simple_repeat 1 81 0 203 0 37 0 chr6 42890462 42890489 -146389065 + (CTCTG)n Simple_repeat Simple_repeat 5 32 0 535 300 99 0 chr6 42890835 42891088 -146388466 - LTR16A LTR ERVL -7 443 166 646 229 35 6 chr6 42891858 42892028 -146387526 + MER104 DNA Tc2 1 175 -5 846 304 162 8 chr6 42893673 42894340 -146385214 - L2 LINE L2 -71 3242 2484 877 237 42 31 chr6 42894341 42894829 -146384725 - MLT1H1 LTR MaLR -2 593 1 228 280 13 13 chr6 42894835 42894910 -146384644 - L2 LINE L2 -835 2479 2405 262 286 86 0 chr6 42894948 42895053 -146384501 + MIR3 SINE MIR 81 194 -14 248 220 0 0 chr6 42895683 42895733 -146383821 - MER5A DNA MER1_type -114 75 26 341 191 29 0 chr6 42895935 42896003 -146383551 + MIR SINE MIR 80 149 -113 317 262 13 67 chr6 42896014 42896163 -146383391 + G-rich Low_complexity Low_complexity 2 142 0 471 35 0 0 chr6 42896453 42896510 -146383044 + (TTA)n Simple_repeat Simple_repeat 2 58 0 325 326 45 15 chr6 42897249 42897381 -146382173 + L2 LINE L2 2933 3068 -204 710 240 15 31 chr6 42897634 42897830 -146381724 + L2 LINE L2 3109 3301 -12 186 274 0 48 chr6 42898131 42898193 -146381361 - MIR SINE MIR -93 115 57 298 210 319 0 chr6 42898408 42898527 -146381027 - MER5A DNA MER1_type -32 157 1 203 208 21 21 chr6 42898731 42898779 -146380775 - L2 LINE L2 0 3313 3266 198 297 54 27 chr6 42899752 42899826 -146379728 - L3b LINE CR1 -4 1579 1504 296 274 57 47 chr6 42899927 42899965 -146379589 - MIR SINE MIR -60 148 112 2586 156 2 5 chr6 42899965 42900362 -146379192 - MSTD LTR MaLR 0 396 1 296 274 57 47 chr6 42900362 42900429 -146379125 - MIR SINE MIR -96 112 42 222 245 10 59 chr6 42901068 42901170 -146378384 + CT-rich Low_complexity Low_complexity 1 97 0 225 0 0 0 chr6 42902094 42902119 -146377435 + (CA)n Simple_repeat Simple_repeat 2 26 0 582 269 40 24 chr6 42902140 42902389 -146377165 - L1MC5 LINE L1 -95 7866 7614 271 318 47 68 chr6 42902937 42903129 -146376425 + L2 LINE L2 3022 3209 -63 190 339 17 0 chr6 42903288 42903347 -146376207 - L2 LINE L2 0 3272 3213 324 275 30 78 chr6 42903592 42903759 -146375795 - MIR SINE MIR -56 206 48 192 125 0 0 chr6 42905367 42905399 -146374155 + (A)n Simple_repeat Simple_repeat 1 32 0 2342 99 0 0 chr6 42905664 42905976 -146373578 + AluSx SINE Alu 1 312 0 671 252 104 94 chr6 42906057 42906545 -146373009 + LTR33A LTR ERVL 29 521 -2 258 316 13 53 chr6 42906547 42906699 -146372855 + L2 LINE L2 2327 2472 -842 28 0 0 0 chr6 42909080 42909108 -146370446 + GC_rich Low_complexity Low_complexity 1 28 0 8091 49 9 0 chr6 42911283 42912243 -146367311 + LTR5 LTR ERVK 1 969 0 368 354 13 6 chr6 42914113 42914271 -146365283 - L3 LINE CR1 -777 800 642 22 0 0 0 chr6 42915486 42915508 -146364046 + AT_rich Low_complexity Low_complexity 1 22 0 648 242 79 6 chr6 42915511 42915676 -146363878 + MIR SINE MIR 29 205 -57 1013 211 106 3 chr6 42915721 42916005 -146363549 - MER58B DNA MER1_type -3 338 26 1631 173 20 7 chr6 42916188 42916483 -146363071 - AluJo SINE Alu -13 299 1 333 247 65 0 chr6 42917335 42917412 -146362142 + MIR SINE MIR 98 179 -83 2269 103 0 0 chr6 42918605 42918907 -146360647 + AluSg SINE Alu 9 310 0 225 296 144 8 chr6 42920845 42920970 -146358584 - MIR3 SINE MIR -30 178 37 578 227 23 0 chr6 42923362 42923490 -146356064 - L2 LINE L2 -257 3056 2926 2168 270 88 44 chr6 42923819 42924984 -146354570 - L2 LINE L2 0 3313 2093 204 256 139 0 chr6 42924978 42925064 -146354490 - MIR SINE MIR -77 131 34 * 288 276 31 51 chr6 42925375 42925473 -146354081 - MIR3 SINE MIR -3 205 110 888 230 46 65 chr6 42925809 42926028 -146353526 + MIR SINE MIR 7 222 -40 1910 19 0 0 chr6 42926028 42926243 -146353311 + AluY SINE Alu 85 299 -12 888 230 46 65 chr6 42926243 42926284 -146353270 + MIR SINE MIR 222 262 0 206 217 133 33 chr6 42927167 42927227 -146352327 - MIR SINE MIR -124 138 73 320 272 233 7 chr6 42927625 42927814 -146351740 - MIR SINE MIR 0 262 26 427 283 196 5 chr6 42932126 42932310 -146347244 - MIR SINE MIR -32 230 12 224 276 11 69 chr6 42932704 42932791 -146346763 - L2 LINE L2 0 3272 3191 261 0 0 0 chr6 42932840 42932869 -146346685 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 42933050 42933078 -146346476 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 42933299 42933329 -146346225 + GC_rich Low_complexity Low_complexity 1 30 0 373 280 70 57 chr6 42935114 42935271 -146344283 - MIR SINE MIR -63 145 6 558 227 182 0 chr6 42939033 42939187 -146340367 + MER5A DNA MER1_type 8 189 0 252 315 78 98 chr6 42939395 42939690 -146339864 - L2 LINE L2 -32 3240 2952 389 249 21 0 chr6 42941573 42941666 -146337888 - MIR3 SINE MIR -38 170 75 295 298 32 16 chr6 42945784 42945908 -146333646 - MLT1L LTR MaLR -324 291 166 498 344 21 27 chr6 42946302 42946488 -146333066 - MIR SINE MIR -2 260 76 1925 148 10 0 chr6 42946588 42946885 -146332669 + AluJo SINE Alu 1 300 -12 252 322 93 0 chr6 42947082 42947200 -146332354 + MIR SINE MIR 55 183 -79 243 0 0 0 chr6 42947205 42947232 -146332322 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 530 328 11 11 chr6 42947237 42947414 -146332140 - L2 LINE L2 -10 3303 3127 2221 114 0 0 chr6 42947473 42947772 -146331782 + AluSx SINE Alu 1 299 -13 2030 88 0 0 chr6 42947772 42948034 -146331520 + AluSg SINE Alu 40 301 -9 317 310 94 8 chr6 42951082 42951254 -146328300 + MIR SINE MIR 1 185 -65 210 216 56 89 chr6 42952776 42952877 -146326677 + MIR SINE MIR 27 124 -95 426 266 0 0 chr6 42952893 42952987 -146326567 + L2 LINE L2 3220 3313 0 1844 141 35 0 chr6 42953028 42953318 -146326236 - AluJb SINE Alu -12 300 1 232 309 40 60 chr6 42954357 42954506 -146325048 + MIR3 SINE MIR 15 160 -48 589 295 131 9 chr6 42954548 42954967 -146324587 + MLT1H1 LTR MaLR 2 556 -39 732 216 7 0 chr6 42954976 42955129 -146324425 - L1MD2 LINE L1 -14 6345 6192 372 43 0 0 chr6 42955170 42955216 -146324338 + (TG)n Simple_repeat Simple_repeat 1 46 0 226 200 22 0 chr6 42955227 42955293 -146324261 + MLT1F1 LTR MaLR 475 567 0 919 266 103 3 chr6 42955883 42956184 -146323370 + MLT1I LTR MaLR 53 383 -26 2304 69 7 0 chr6 42956897 42957186 -146322368 - AluY SINE Alu 0 311 21 180 111 0 0 chr6 42957246 42957273 -146322281 + (TG)n Simple_repeat Simple_repeat 1 27 0 545 279 0 21 chr6 42957370 42957510 -146322044 + L3 LINE CR1 685 821 -756 522 321 189 13 chr6 42958169 42958471 -146321083 + L3 LINE CR1 1221 1575 -2 489 308 137 9 chr6 42959375 42959602 -146319952 + MIR SINE MIR 6 261 -1 436 342 26 45 chr6 42959609 42959875 -146319679 + L3 LINE CR1 1301 1561 -16 2243 106 0 0 chr6 42961379 42961681 -146317873 + AluSc SINE Alu 3 304 -5 2244 97 0 31 chr6 42962301 42962621 -146316933 - AluY SINE Alu -1 310 1 957 277 143 48 chr6 42962653 42962673 -146316881 - HAL1 LINE L1 -5 2502 2485 1238 137 189 12 chr6 42962673 42962921 -146316633 + AluSg1 SINE Alu 1 292 -17 957 277 143 48 chr6 42962921 42963304 -146316250 - HAL1 LINE L1 -22 2485 2139 2157 123 3 0 chr6 42963304 42963614 -146315940 + AluSx SINE Alu 1 311 -1 957 277 143 48 chr6 42963614 42963668 -146315886 - HAL1 LINE L1 -368 2139 2091 1426 122 72 89 chr6 42963668 42963972 -146315582 - AluJb SINE Alu -13 299 1 957 277 143 48 chr6 42963972 42964256 -146315298 - HAL1 LINE L1 -416 2091 1689 349 286 57 64 chr6 42964373 42964513 -146315041 - HAL1 LINE L1 -2317 190 52 256 218 55 0 chr6 42964585 42964640 -146314914 + L2 LINE L2 3215 3272 0 327 247 24 35 chr6 42964731 42964816 -146314738 - HAL1 LINE L1 -319 2188 2105 458 250 33 17 chr6 42965358 42965478 -146314076 + MIR SINE MIR 46 167 -41 215 295 156 0 chr6 42965440 42965562 -146313992 + L2 LINE L2 2520 2660 -654 * 225 234 0 0 chr6 42965603 42965650 -146313904 + MER45 DNA AcHobo 1526 1572 -9 736 278 153 21 chr6 42965731 42966039 -146313515 + L2 LINE L2 2826 3209 -104 2063 123 3 0 chr6 42966039 42966360 -146313194 + AluSp SINE Alu 1 322 0 736 278 153 21 chr6 42966360 42966481 -146313073 + L2 LINE L2 3209 3313 0 252 157 39 0 chr6 42966643 42966694 -146312860 - MER53 DNA DNA -135 54 2 632 209 14 14 chr6 42967235 42967374 -146312180 + MIR SINE MIR 113 251 -11 197 336 48 10 chr6 42967967 42968071 -146311483 + MIR SINE MIR 35 142 -66 1053 0 0 0 chr6 42968077 42968096 -146311458 + AluY SINE Alu 3 19 -293 2304 53 0 3 chr6 42968096 42968378 -146311176 + AluY SINE Alu 3 283 -28 1053 0 0 0 chr6 42968378 42968473 -146311081 + AluY SINE Alu 19 312 0 390 321 78 12 chr6 42968582 42968825 -146310729 + L2 LINE L2 2843 3101 -171 1288 200 95 3 chr6 42968985 42969270 -146310284 + AluJb SINE Alu 1 311 -1 624 253 71 27 chr6 42969270 42969487 -146310067 - MIR SINE MIR -5 257 28 438 323 26 42 chr6 42969497 42969689 -146309865 + MIR3 SINE MIR 13 201 -7 440 276 0 0 chr6 42970491 42970596 -146308958 + MIR SINE MIR 119 223 -39 324 0 0 0 chr6 42970683 42970719 -146308835 + (CA)n Simple_repeat Simple_repeat 2 37 0 357 329 99 58 chr6 42971524 42971837 -146307717 - L2 LINE L2 0 3272 2947 521 280 123 23 chr6 42971846 42972107 -146307447 - L2 LINE L2 -530 2784 2498 405 297 0 0 chr6 42972365 42972466 -146307088 + MIR SINE MIR 123 223 -39 820 180 6 55 chr6 42973708 42973891 -146305663 - AluJb SINE Alu -4 308 135 220 196 59 0 chr6 42975286 42975337 -146304217 + CT-rich Low_complexity Low_complexity 1 54 0 185 317 89 10 chr6 42976311 42976412 -146303142 - MER5A DNA MER1_type -32 157 49 279 192 0 0 chr6 42977841 42977914 -146301640 + (CA)n Simple_repeat Simple_repeat 1 73 0 252 346 19 0 chr6 42980152 42980256 -146299298 + MIR SINE MIR 36 141 -121 2441 60 3 16 chr6 42980387 42980704 -146298850 - AluSp SINE Alu 0 313 1 2172 116 0 13 chr6 42980704 42981014 -146298540 - AluSx SINE Alu -4 308 2 482 206 29 0 chr6 42981071 42981173 -146298381 - MLT1I LTR MaLR 0 409 305 233 234 94 0 chr6 42981180 42981244 -146298310 - MLT1J1 LTR MaLR -139 307 238 304 239 110 9 chr6 42983526 42983635 -146295919 + MIR SINE MIR 23 142 -66 861 228 42 33 chr6 42983661 42983902 -146295652 + MIR SINE MIR 9 251 -11 517 251 70 48 chr6 42985421 42985608 -146293946 - MIR SINE MIR 0 262 72 2215 74 0 3 chr6 42985669 42985972 -146293582 + AluSx SINE Alu 1 302 0 22 35 0 0 chr6 42986150 42986179 -146293375 + AT_rich Low_complexity Low_complexity 1 29 0 1882 143 10 0 chr6 42986210 42986503 -146293051 + AluJb SINE Alu 1 296 -16 182 286 18 0 chr6 42988068 42988124 -146291430 + MER5A DNA MER1_type 61 117 -72 2449 75 0 0 chr6 42988144 42988452 -146291102 - AluSp SINE Alu -5 308 1 734 268 28 9 chr6 42989593 42989806 -146289748 - MIR SINE MIR -32 230 14 204 328 0 0 chr6 42991601 42991659 -146287895 + MIR SINE MIR 64 121 -87 494 200 31 77 chr6 42992284 42992361 -146287193 - LTR33 LTR ERVL -4 517 438 2298 97 0 0 chr6 42992361 42992671 -146286883 + AluSg SINE Alu 1 310 0 494 200 31 77 chr6 42992671 42992788 -146286766 - LTR33 LTR ERVL -83 438 332 726 226 40 20 chr6 42992817 42993016 -146286538 - LTR33 LTR ERVL -308 213 11 186 302 0 0 chr6 42994948 42994991 -146284563 - MIR SINE MIR -112 150 108 2297 67 40 0 chr6 42997114 42997413 -146282141 - AluY SINE Alu 0 311 1 181 0 33 33 chr6 43001029 43001059 -146278495 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 249 139 0 0 chr6 43002425 43002468 -146277086 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 207 270 63 0 chr6 43002468 43002531 -146277023 - L2 LINE L2 -1 3271 3205 264 77 0 0 chr6 43002578 43002617 -146276937 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 185 279 0 0 chr6 43003102 43003145 -146276409 + L2 LINE L2 2600 2642 -672 262 224 35 0 chr6 43003242 43003300 -146276254 - MLT1J2 LTR MaLR -1 449 390 243 118 0 0 chr6 43003331 43003365 -146276189 - MLT1J1 LTR MaLR -127 319 286 239 237 0 17 chr6 43003335 43003394 -146276160 - MLT1J LTR MaLR -130 381 324 * 336 262 47 28 chr6 43003455 43003562 -146275992 - MLT1J1 LTR MaLR -314 132 24 2181 112 3 0 chr6 43004429 43004732 -146274822 + AluSx SINE Alu 4 307 -5 213 204 296 10 chr6 43004947 43005045 -146274509 - L2 LINE L2 -165 3148 3023 951 148 79 30 chr6 43006009 43006212 -146273342 + MIR SINE MIR 13 225 -37 2012 131 3 19 chr6 43006212 43006526 -146273028 + AluJo SINE Alu 1 309 -3 261 304 14 0 chr6 43006576 43006645 -146272909 - MIR SINE MIR -105 157 88 204 222 203 34 chr6 43006648 43006855 -146272699 + L2 LINE L2 2923 3164 -149 925 162 6 52 chr6 43006970 43007081 -146272473 + MER45A DNA AcHobo 1 103 -1478 1444 182 43 7 chr6 43007081 43007361 -146272193 - AluJo SINE Alu -22 290 1 925 162 6 52 chr6 43007361 43007422 -146272132 + MER45A DNA AcHobo 103 165 -13 324 70 0 0 chr6 43007452 43007495 -146272059 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 186 306 69 0 chr6 43007859 43007931 -146271623 - L2 LINE L2 -27 3245 3169 4966 132 37 33 chr6 43008631 43009577 -146269977 + L1MB3 LINE L1 5176 6117 -66 1827 93 43 25 chr6 43009577 43009879 -146269675 + AluSq SINE Alu 1 307 0 913 106 16 0 chr6 43009886 43010009 -146269545 + FLAM_C SINE Alu 1 125 -8 4966 132 37 33 chr6 43010009 43010057 -146269497 + L1MB3 LINE L1 6122 6181 -2 504 223 108 19 chr6 43011002 43011059 -146268495 + MER5B DNA MER1_type 6 57 -121 782 108 46 31 chr6 43011059 43011189 -146268365 + FLAM_C SINE Alu 1 132 -1 504 223 108 19 chr6 43011189 43011288 -146268266 + MER5B DNA MER1_type 57 176 -2 1527 283 127 16 chr6 43011545 43012539 -146267015 - L2 LINE L2 0 3313 2217 267 336 8 49 chr6 43012867 43012989 -146266565 + L2 LINE L2 3156 3272 0 385 307 73 28 chr6 43013881 43014060 -146265494 - MIR SINE MIR -55 207 21 2413 70 0 0 chr6 43017042 43017342 -146262212 + AluY SINE Alu 1 300 -11 257 311 107 8 chr6 43018235 43018357 -146261197 - MIR SINE MIR -2 260 127 1449 177 113 11 chr6 43018363 43018725 -146260829 + L1MC4 LINE L1 7545 7943 -99 315 308 13 0 chr6 43018753 43018831 -146260723 - MIR SINE MIR -149 113 35 1644 91 5 5 chr6 43018942 43019162 -146260392 + AluSg SINE Alu 34 253 -57 2170 117 0 3 chr6 43020063 43020362 -146259192 + AluSx SINE Alu 1 298 -14 402 169 24 0 chr6 43021550 43021633 -146257921 + MER5A DNA MER1_type 12 96 -93 1223 139 22 45 chr6 43023538 43023761 -146255793 + MER20 DNA MER1_type 2 219 0 429 280 23 15 chr6 43023972 43024104 -146255450 - MIR SINE MIR -108 154 22 441 244 43 0 chr6 43024120 43024235 -146255319 + MIR SINE MIR 33 152 -110 316 234 39 0 chr6 43025552 43025629 -146253925 - Charlie4 DNA MER1_type -64 1897 1818 188 275 325 6 chr6 43030810 43030970 -146248584 + L2 LINE L2 3012 3222 -50 1025 248 40 4 chr6 43031705 43031955 -146247599 - MIR SINE MIR 0 262 4 454 302 101 0 chr6 43032577 43032716 -146246838 - MER91B DNA MER1_type -37 153 1 207 222 20 78 chr6 43035680 43035833 -146243721 + (CA)n Simple_repeat Simple_repeat 2 145 0 355 225 90 27 chr6 43038516 43038627 -146240927 + MIR SINE MIR 36 153 -109 261 133 0 0 chr6 43040007 43040052 -146239502 - MER91B DNA MER1_type -151 45 1 2122 112 0 3 chr6 43040188 43040483 -146239071 + AluSx SINE Alu 1 294 -18 885 282 107 25 chr6 43040758 43041152 -146238402 - ERVL LTR ERVL -3887 1877 1452 436 151 43 11 chr6 43041154 43041247 -146238307 + MLT1F1 LTR MaLR 472 567 0 2464 63 3 0 chr6 43041251 43041554 -146238000 + AluY SINE Alu 1 304 -7 226 261 23 0 chr6 43041562 43041650 -146237904 - L1MC4a LINE L1 -1807 6001 5912 193 250 0 0 chr6 43042723 43042767 -146236787 + L2 LINE L2 3003 3046 -226 305 248 110 55 chr6 43043066 43043175 -146236379 - L2 LINE L2 -5 3308 3194 189 290 97 0 chr6 43043181 43043243 -146236311 + L2 LINE L2 3203 3270 -2 193 325 34 26 chr6 43045687 43045804 -146233750 + L2 LINE L2 2947 3064 -208 423 310 93 31 chr6 43045917 43046143 -146233411 + MIR SINE MIR 4 243 -19 2203 112 0 13 chr6 43046927 43047230 -146232324 - AluSx SINE Alu -13 299 1 1353 261 74 5 chr6 43047273 43047694 -146231860 + Charlie4a DNA MER1_type 17 466 -42 498 287 48 0 chr6 43048353 43048542 -146231012 + MIR3 SINE MIR 15 212 -50 306 203 45 135 chr6 43049534 43049667 -146229887 + MIR3 SINE MIR 39 159 -49 * 656 188 8 0 chr6 43049664 43049781 -146229773 - MER5A DNA MER1_type -11 178 61 746 143 76 0 chr6 43049814 43049933 -146229621 - FLAM_C SINE Alu -5 128 1 341 164 134 0 chr6 43049933 43050000 -146229554 - MER5A DNA MER1_type -113 76 1 197 254 70 0 chr6 43050491 43050562 -146228992 - L2 LINE L2 -223 3049 2974 214 311 0 29 chr6 43052293 43052396 -146227158 + G-rich Low_complexity Low_complexity 2 101 0 836 258 24 0 chr6 43052516 43052725 -146226829 + MIR SINE MIR 28 241 -21 1117 141 0 0 chr6 43052762 43052925 -146226629 - AluSg/x SINE Alu -19 291 129 195 341 23 11 chr6 43053507 43053595 -146225959 + L2 LINE L2 3153 3241 -31 419 271 24 77 chr6 43054736 43054818 -146224736 + L2 LINE L2 3152 3222 -91 537 185 311 0 chr6 43054818 43054953 -146224601 - MER45A DNA AcHobo -1 177 1 419 271 24 77 chr6 43054953 43055040 -146224514 + L2 LINE L2 3222 3312 -1 276 290 187 36 chr6 43055670 43056060 -146223494 + L1MC4 LINE L1 7594 8042 0 674 289 65 9 chr6 43056077 43056309 -146223245 + MIR SINE MIR 18 262 0 464 276 21 57 chr6 43056793 43056985 -146222569 + MIR SINE MIR 8 192 -70 213 135 27 0 chr6 43057353 43057390 -146222164 + (CCCCAG)n Simple_repeat Simple_repeat 5 42 0 338 215 13 0 chr6 43057906 43057985 -146221569 + MER46C DNA MER2_type 258 337 -1 253 343 110 7 chr6 43057985 43058131 -146221423 - MIR SINE MIR -61 201 41 346 306 8 40 chr6 43058143 43058267 -146221287 - L3 LINE CR1 -7 1570 1451 383 155 28 0 chr6 43059118 43059189 -146220365 + L2 LINE L2 3229 3301 -12 500 196 53 38 chr6 43060338 43060350 -146219204 + MIR SINE MIR 52 62 -200 2018 124 19 3 chr6 43060350 43060657 -146218897 - AluSq SINE Alu -1 312 1 500 196 53 38 chr6 43060657 43060777 -146218777 + MIR SINE MIR 62 186 -76 756 275 69 0 chr6 43060798 43061016 -146218538 - MIR SINE MIR -17 245 13 2098 98 0 7 chr6 43061399 43061723 -146217831 - AluSx SINE Alu 0 322 1 933 223 28 9 chr6 43063931 43064142 -146215412 - MIR SINE MIR -43 219 5 276 130 0 0 chr6 43064508 43064554 -146215000 + (CA)n Simple_repeat Simple_repeat 1 46 0 269 275 23 76 chr6 43065795 43065926 -146213628 + MIR3 SINE MIR 37 160 -48 443 283 241 0 chr6 43065983 43066128 -146213426 + MER91A DNA MER1_type 9 188 -8 870 142 0 15 chr6 43066220 43066354 -146213200 - AluJo SINE Alu -176 136 5 922 197 121 76 chr6 43066915 43067295 -146212259 + LTR16A1 LTR ERVL 61 457 0 262 270 0 0 chr6 43067514 43067577 -146211977 + L3 LINE CR1 1396 1458 -119 2275 116 0 0 chr6 43068072 43068383 -146211171 - AluSx SINE Alu 0 312 2 676 295 78 0 chr6 43068650 43068908 -146210646 + MER20B DNA MER1_type 155 432 -351 968 125 0 0 chr6 43068955 43069091 -146210463 + FLAM_C SINE Alu 1 136 -7 40 0 0 20 chr6 43069128 43069162 -146210392 + AT_rich Low_complexity Low_complexity 1 35 -15 1638 188 3 3 chr6 43069162 43069454 -146210100 + AluJo SINE Alu 1 292 -20 40 0 0 20 chr6 43069454 43069470 -146210084 + AT_rich Low_complexity Low_complexity 35 50 0 2269 89 0 16 chr6 43069606 43069910 -146209644 + AluSg SINE Alu 1 299 -11 208 298 61 61 chr6 43069920 43070034 -146209520 + L2 LINE L2 3145 3258 -55 232 364 34 0 chr6 43070940 43071058 -146208496 + L1MEd LINE L1 939 1060 -5470 2559 43 0 3 chr6 43071069 43071374 -146208180 - AluY SINE Alu -6 305 2 638 317 102 36 chr6 43071382 43071745 -146207809 + L1MEd LINE L1 1021 1407 -5133 271 301 97 0 chr6 43072492 43072585 -146206969 - MER5B DNA MER1_type -38 140 39 2211 113 3 0 chr6 43072845 43073154 -146206400 + AluSp SINE Alu 1 310 -3 2174 94 0 20 chr6 43073167 43073465 -146206089 + AluSg1 SINE Alu 1 292 -17 1633 133 72 14 chr6 43073478 43073757 -146205797 + AluJb SINE Alu 3 297 -15 455 246 107 16 chr6 43073894 43074004 -146205550 + HAL1 LINE L1 2187 2286 -221 2147 139 0 0 chr6 43074004 43074313 -146205241 + AluJb SINE Alu 1 309 -3 455 246 107 16 chr6 43074313 43074389 -146205165 + HAL1 LINE L1 2286 2390 -117 261 357 94 6 chr6 43074390 43074561 -146204993 + L1MB3 LINE L1 5522 5707 -2101 2395 179 22 22 chr6 43074569 43075033 -146204521 + L1MB3 LINE L1 5718 6181 -2 1617 189 20 17 chr6 43075045 43075342 -146204212 + AluJb SINE Alu 2 299 -13 243 0 0 0 chr6 43076585 43076612 -146202942 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 618 212 57 61 chr6 43076693 43076938 -146202616 + MER112 DNA MER1_type 17 260 0 192 383 35 26 chr6 43076950 43077065 -146202489 - MIR SINE MIR -73 135 20 259 238 48 0 chr6 43077201 43077264 -146202290 - L2 LINE L2 0 3272 3207 315 193 172 110 chr6 43077907 43077940 -146201614 + MIR SINE MIR 9 39 -223 2335 86 0 3 chr6 43077940 43078242 -146201312 - AluSc SINE Alu -8 301 1 315 193 172 110 chr6 43078242 43078353 -146201201 + MIR SINE MIR 39 162 -100 302 316 97 0 chr6 43078557 43078671 -146200883 - L1MC4 LINE L1 -4 8038 7914 2161 125 0 10 chr6 43078689 43079002 -146200552 + AluSx SINE Alu 1 310 -2 1747 149 7 30 chr6 43079014 43079315 -146200239 + AluJb SINE Alu 3 296 -16 254 296 24 40 chr6 43079526 43079651 -146199903 - L1ME LINE L1 -359 5811 5689 476 253 104 42 chr6 43079677 43079754 -146199800 - MER112 DNA MER1_type 0 260 189 2450 63 0 0 chr6 43079754 43080055 -146199499 - AluY SINE Alu -10 301 1 476 253 104 42 chr6 43080055 43080218 -146199336 - MER112 DNA MER1_type -71 189 5 436 325 6 6 chr6 43080221 43080381 -146199173 - L1ME LINE L1 -508 5656 5497 180 0 0 0 chr6 43080505 43080525 -146199029 + (CACTT)n Simple_repeat Simple_repeat 1 20 0 1012 123 0 0 chr6 43080567 43080705 -146198849 + AluSq/x SINE Alu 1 138 -174 2234 76 0 7 chr6 43080707 43081028 -146198526 + AluY SINE Alu 7 311 0 2419 83 0 0 chr6 43081031 43081333 -146198221 + AluSq SINE Alu 1 302 -11 2102 114 6 16 chr6 43081790 43082105 -146197449 - AluSq SINE Alu -1 312 1 207 272 109 61 chr6 43082412 43082559 -146196995 + MIR SINE MIR 54 207 -1 270 0 0 0 chr6 43082926 43082956 -146196598 + (CA)n Simple_repeat Simple_repeat 2 31 0 2071 104 33 3 chr6 43083483 43083782 -146195772 + AluSg1 SINE Alu 1 308 -1 396 161 0 0 chr6 43083785 43083866 -146195688 + GA-rich Low_complexity Low_complexity 4 84 0 216 374 149 0 chr6 43083874 43083981 -146195573 + MIR SINE MIR 26 148 -114 980 249 36 22 chr6 43083987 43084059 -146195495 - LTR33 LTR ERVL 0 521 452 2098 119 0 3 chr6 43084059 43084354 -146195200 + AluSx SINE Alu 6 299 -13 980 249 36 22 chr6 43084354 43084731 -146194823 - LTR33 LTR ERVL -69 452 1 445 314 178 47 chr6 43086101 43086815 -146192739 - L2 LINE L2 0 3313 2481 1203 214 34 7 chr6 43087234 43087529 -146192025 - L1MC2 LINE L1 -9 6335 6033 272 247 14 14 chr6 43087657 43087730 -146191824 - MIR SINE MIR -131 131 59 264 278 48 55 chr6 43087737 43087998 -146191556 - LTR16C LTR ERVL -4 487 158 208 271 17 0 chr6 43088121 43088180 -146191374 - L2 LINE L2 0 3272 3213 322 205 26 26 chr6 43088826 43088904 -146190650 - MIR SINE MIR -109 153 76 184 360 40 0 chr6 43088906 43088981 -146190573 - MIR SINE MIR -112 150 73 468 290 43 7 chr6 43088983 43089121 -146190433 - MIR SINE MIR -115 147 5 32 0 0 0 chr6 43089703 43089735 -146189819 + AT_rich Low_complexity Low_complexity 1 32 0 537 223 123 0 chr6 43089863 43089993 -146189561 - MIR SINE MIR 0 262 117 218 270 32 0 chr6 43090013 43090076 -146189478 + L2 LINE L2 2979 3043 -229 277 228 79 94 chr6 43090155 43090191 -146189363 + MIR SINE MIR 46 81 -181 2281 97 0 0 chr6 43090191 43090490 -146189064 - AluSg SINE Alu -11 299 1 277 228 79 94 chr6 43090490 43090580 -146188974 + MIR SINE MIR 81 170 -92 2006 144 27 47 chr6 43090597 43090622 -146188932 + MSTB LTR MaLR 31 55 -371 2368 83 0 0 chr6 43090622 43090923 -146188631 + AluSg SINE Alu 3 303 -7 2006 144 27 47 chr6 43090923 43091299 -146188255 + MSTB LTR MaLR 55 424 -2 9080 160 42 28 chr6 43091305 43091844 -146187710 + MSTB-int LTR MaLR 1 531 -1120 2043 108 20 3 chr6 43091844 43092139 -146187415 - AluSq SINE Alu -13 300 1 9080 160 42 28 chr6 43092139 43092900 -146186654 + MSTB-int LTR MaLR 531 1332 -319 1985 116 3 0 chr6 43092900 43093219 -146186335 + AluSx SINE Alu 1 320 0 9080 160 42 28 chr6 43093219 43093541 -146186013 + MSTB-int LTR MaLR 1332 1648 -3 2676 126 20 48 chr6 43093544 43093743 -146185811 + MSTB LTR MaLR 1 204 -222 2227 102 0 7 chr6 43093743 43094038 -146185516 + AluSx SINE Alu 1 293 -19 2676 126 20 48 chr6 43094038 43094276 -146185278 + MSTB LTR MaLR 204 426 0 213 351 0 0 chr6 43094276 43094353 -146185201 + MIR SINE MIR 168 244 -18 569 247 134 4 chr6 43094483 43094714 -146184840 - LTR16C LTR ERVL 0 491 231 1742 150 14 7 chr6 43094739 43095026 -146184528 - AluJo SINE Alu -23 289 1 2080 91 4 7 chr6 43095049 43095325 -146184229 + AluSx SINE Alu 1 275 -37 2415 75 3 0 chr6 43095326 43095631 -146183923 + AluSp SINE Alu 1 306 -7 656 187 114 0 chr6 43095631 43095754 -146183800 - FRAM SINE Alu -39 137 1 492 220 43 35 chr6 43095755 43095896 -146183658 - LTR16C LTR ERVL -258 233 92 2243 97 0 0 chr6 43096088 43096387 -146183167 + AluSc SINE Alu 2 300 -9 2314 80 0 19 chr6 43096395 43096707 -146182847 + AluY SINE Alu 1 306 -5 286 185 8 12 chr6 43097310 43097447 -146182107 - MER2 DNA MER2_type 0 345 165 2265 103 6 3 chr6 43097450 43097761 -146181793 + AluSx SINE Alu 1 312 0 2165 113 3 0 chr6 43097906 43098217 -146181337 + AluSp SINE Alu 1 312 -1 1178 118 0 0 chr6 43098217 43098386 -146181168 + AluSq SINE Alu 134 302 -11 680 230 9 59 chr6 43098871 43098902 -146180652 - L2 LINE L2 -1 3312 3281 600 192 80 16 chr6 43098902 43099027 -146180527 - FLAM_A SINE Alu 0 133 1 680 230 9 59 chr6 43099027 43099217 -146180337 - L2 LINE L2 -32 3281 3102 863 94 6 126 chr6 43099219 43099378 -146180176 + AluSq/x SINE Alu 1 140 -173 660 126 0 39 chr6 43099396 43099499 -146180055 - AluJb SINE Alu -209 103 5 723 261 70 55 chr6 43099512 43099703 -146179851 - L2 LINE L2 -244 3069 2867 2171 109 3 26 chr6 43099703 43100016 -146179538 + AluSx SINE Alu 1 306 -6 723 261 70 55 chr6 43100016 43100165 -146179389 - L2 LINE L2 -446 2867 2722 414 293 49 76 chr6 43100195 43100283 -146179271 - MIR SINE MIR -21 241 152 2083 101 3 21 chr6 43100283 43100606 -146178948 + AluSp SINE Alu 1 318 0 414 293 49 76 chr6 43100606 43100620 -146178934 - MIR SINE MIR -110 152 139 2271 85 6 16 chr6 43100620 43100936 -146178618 + AluSp SINE Alu 1 313 0 414 293 49 76 chr6 43100936 43101056 -146178498 - MIR SINE MIR -123 139 23 1358 139 33 19 chr6 43101113 43101328 -146178226 - MER20 DNA MER1_type 0 219 2 220 388 0 10 chr6 43101479 43101582 -146177972 + L2 LINE L2 2753 2854 -460 2018 84 3 51 chr6 43102027 43102173 -146177381 + AluSx SINE Alu 1 152 -205 1781 33 9 0 chr6 43102173 43102383 -146177171 + AluY SINE Alu 92 303 -8 1938 119 0 44 chr6 43102383 43102702 -146176852 + AluSc SINE Alu 1 305 -4 2018 84 3 51 chr6 43102702 43102925 -146176629 + AluSx SINE Alu 150 357 0 307 274 76 79 chr6 43103032 43103309 -146176245 + L2 LINE L2 2939 3214 -58 738 271 213 6 chr6 43103789 43103920 -146175634 + L2 LINE L2 2615 2718 -595 758 121 179 0 chr6 43103920 43104060 -146175494 + FRAM SINE Alu 1 165 -1 738 271 213 6 chr6 43104060 43104482 -146175072 + L2 LINE L2 2718 3296 -17 2136 102 3 7 chr6 43104493 43104788 -146174766 - AluSq SINE Alu -19 294 1 299 267 71 52 chr6 43104810 43104978 -146174576 - MIR SINE MIR -58 150 1 222 113 14 113 chr6 43105300 43105371 -146174183 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 347 219 119 46 chr6 43105462 43105613 -146173941 - MER91A DNA MER1_type 0 196 35 201 281 0 0 chr6 43106104 43106168 -146173386 - MIR SINE MIR -62 146 83 363 80 0 0 chr6 43108176 43108226 -146171328 + L1PA5 LINE L1 6105 6154 0 2029 145 0 0 chr6 43108664 43108961 -146170593 - AluJb SINE Alu -15 297 1 199 294 219 8 chr6 43109080 43109199 -146170355 - MIR3 SINE MIR -56 152 9 546 301 0 12 chr6 43109459 43109632 -146169922 - MIR3 SINE MIR -7 201 31 279 54 0 0 chr6 43109661 43109698 -146169856 + (TG)n Simple_repeat Simple_repeat 1 37 0 546 233 218 5 chr6 43110378 43110571 -146168983 + MIR SINE MIR 18 251 -11 859 261 23 9 chr6 43111552 43111770 -146167784 - MIR SINE MIR -14 248 28 2396 74 3 0 chr6 43113497 43113807 -146165747 - AluY SINE Alu 0 311 1 2345 91 0 0 chr6 43113807 43114114 -146165440 - AluSc SINE Alu -2 307 1 2065 99 3 39 chr6 43114117 43114286 -146165268 - AluSq SINE Alu -12 301 128 2230 103 6 0 chr6 43114286 43114597 -146164957 - AluSp SINE Alu 0 313 1 2056 61 0 11 chr6 43114599 43114861 -146164693 - AluY SINE Alu -12 299 41 2065 99 3 39 chr6 43114861 43115000 -146164554 - AluSq SINE Alu -186 127 1 1396 151 50 76 chr6 43115000 43115317 -146164237 - AluJo SINE Alu -3 309 1 1818 153 0 36 chr6 43115320 43115628 -146163926 - AluJo SINE Alu -15 297 1 2164 99 0 7 chr6 43115785 43116078 -146163476 - AluSc SINE Alu -18 291 1 267 281 141 8 chr6 43116090 43116218 -146163336 + MIR SINE MIR 104 248 -14 1871 84 0 0 chr6 43117353 43117590 -146161964 - AluSg SINE Alu -12 298 62 391 327 106 18 chr6 43118260 43118477 -146161077 + MIR SINE MIR 17 252 -10 634 109 33 0 chr6 43118855 43118947 -146160607 + AluSg1 SINE Alu 1 95 -214 211 204 0 20 chr6 43119672 43119721 -146159833 + MIR SINE MIR 46 93 -115 394 269 101 13 chr6 43119805 43119954 -146159600 + MIR SINE MIR 29 190 -72 908 69 0 23 chr6 43120021 43120054 -146159500 - AluSp/q SINE Alu 0 331 299 2550 70 0 10 chr6 43120054 43120368 -146159186 - AluY SINE Alu 0 311 1 908 69 0 23 chr6 43120368 43120482 -146159072 - AluSp/q SINE Alu -32 299 187 2426 77 3 10 chr6 43120369 43120668 -146158886 - AluSp SINE Alu -14 299 3 295 250 204 72 chr6 43121823 43121975 -146157579 + MIR SINE MIR 1 172 -90 218 250 0 0 chr6 43124979 43125027 -146154527 - MIR SINE MIR -9 253 206 2283 80 0 51 chr6 43126208 43126520 -146153034 - AluSg SINE Alu -14 296 1 351 179 0 0 chr6 43126574 43126641 -146152913 + (TG)n Simple_repeat Simple_repeat 1 67 0 2275 108 10 3 chr6 43126840 43127146 -146152408 + AluSp SINE Alu 1 308 -5 2218 86 34 0 chr6 43128066 43128357 -146151197 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 43129944 43129965 -146149589 + AT_rich Low_complexity Low_complexity 1 21 0 979 148 36 61 chr6 43129972 43130168 -146149386 + AluJo SINE Alu 84 274 -38 584 119 0 10 chr6 43130175 43130276 -146149278 + (GGGA)n Simple_repeat Simple_repeat 1 100 0 653 164 112 154 chr6 43130281 43130567 -146148987 + LTR54 LTR ERV1 45 318 -192 885 143 0 0 chr6 43130571 43130697 -146148857 + FLAM_C SINE Alu 9 134 -9 2463 83 3 19 chr6 43130697 43131011 -146148543 + AluSp SINE Alu 1 309 -4 879 148 11 69 chr6 43131033 43131089 -146148465 + LTR54 LTR ERV1 333 391 -119 2256 100 0 36 chr6 43131089 43131390 -146148164 + AluSx SINE Alu 3 292 -20 879 148 11 69 chr6 43131390 43131522 -146148032 + LTR54 LTR ERV1 391 510 0 232 91 0 0 chr6 43131624 43131657 -146147897 - L2 LINE L2 -1 3271 3239 2172 92 14 10 chr6 43131782 43132074 -146147480 - AluSp SINE Alu -19 294 2 726 106 71 0 chr6 43132088 43132201 -146147353 - AluJb SINE Alu -19 293 173 2310 102 6 19 chr6 43132228 43132543 -146147011 + AluSq SINE Alu 1 311 -2 207 254 206 0 chr6 43132577 43132640 -146146914 + MIR SINE MIR 13 88 -174 2141 124 0 3 chr6 43132673 43132971 -146146583 - AluSg SINE Alu -13 297 1 729 192 0 0 chr6 43132977 43133102 -146146452 - FLAM_C SINE Alu -17 126 2 2510 96 0 0 chr6 43133129 43133441 -146146113 + AluSx SINE Alu 1 312 0 640 158 108 0 chr6 43133445 43133565 -146145989 + AluJ SINE Alu 1 133 -169 1951 154 0 19 chr6 43133587 43133720 -146145834 + AluJo SINE Alu 3 137 -175 2177 100 0 43 chr6 43133720 43134057 -146145497 + AluSx SINE Alu 1 324 0 1951 154 0 19 chr6 43134057 43134232 -146145322 + AluJo SINE Alu 137 307 -5 207 308 137 17 chr6 43134243 43134360 -146145194 - MIR SINE MIR -14 248 118 1020 156 17 22 chr6 43134361 43134540 -146145014 + AluJ SINE Alu 134 311 -1 1032 227 50 78 chr6 43134570 43134724 -146144830 - MLT1H LTR MaLR -198 351 194 2457 76 0 7 chr6 43134724 43135028 -146144526 - AluSp SINE Alu -11 302 1 1032 227 50 78 chr6 43135028 43135154 -146144400 - MLT1H LTR MaLR -355 194 81 2402 60 40 3 chr6 43135154 43135453 -146144101 + AluY SINE Alu 2 311 0 1032 227 50 78 chr6 43135453 43135532 -146144022 - MLT1H LTR MaLR -468 81 1 1801 151 10 36 chr6 43135553 43135858 -146143696 - AluJo SINE Alu -15 297 1 2273 89 31 0 chr6 43136001 43136292 -146143262 - AluSx SINE Alu -12 300 1 2075 142 7 0 chr6 43136734 43137022 -146142532 - AluSx SINE Alu -21 291 2 1423 201 37 8 chr6 43137135 43137403 -146142151 - AluJo SINE Alu -24 288 13 2220 106 17 10 chr6 43137431 43137733 -146141821 + AluSx SINE Alu 1 304 -8 2177 86 11 4 chr6 43137826 43138131 -146141423 - AluY SINE Alu 0 308 2 1835 117 36 22 chr6 43138132 43138406 -146141148 - AluSp SINE Alu -35 278 1 766 190 0 25 chr6 43138413 43138571 -146140983 - AluJ SINE Alu -12 290 137 333 61 20 0 chr6 43138571 43138620 -146140934 - AluJ SINE Alu -166 136 87 * 1447 227 34 96 chr6 43138609 43139138 -146140416 + LTR8 LTR ERV1 196 691 0 2415 91 7 0 chr6 43139216 43139525 -146140029 - AluSp SINE Alu -2 311 1 297 224 160 32 chr6 43139528 43139653 -146139901 - MLT1H LTR MaLR -146 403 263 203 51 26 51 chr6 43139797 43139836 -146139718 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 1588 149 17 85 chr6 43139838 43139961 -146139593 + AluSx SINE Alu 1 131 -181 425 88 0 15 chr6 43139961 43140029 -146139525 + (TA)n Simple_repeat Simple_repeat 1 67 0 1588 149 17 85 chr6 43140029 43140200 -146139354 + AluSx SINE Alu 131 275 -37 2326 101 7 3 chr6 43140200 43140506 -146139048 - AluSq SINE Alu -5 308 1 2087 83 4 0 chr6 43140664 43140918 -146138636 + AluSp SINE Alu 21 275 -38 1903 110 0 16 chr6 43140998 43141252 -146138302 + AluSq SINE Alu 1 250 -63 207 0 0 0 chr6 43141256 43141279 -146138275 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2304 113 0 3 chr6 43141297 43141598 -146137956 - AluSx SINE Alu -12 300 1 1686 172 17 33 chr6 43141674 43141976 -146137578 + AluJo SINE Alu 1 297 -15 2262 108 0 0 chr6 43142200 43142495 -146137059 - AluSg SINE Alu -15 295 1 2328 92 3 0 chr6 43142570 43142862 -146136692 - AluSc SINE Alu -14 295 3 1852 159 0 3 chr6 43143271 43143554 -146136000 + AluJb SINE Alu 1 282 -30 1772 172 3 7 chr6 43143556 43143846 -146135708 - AluJb SINE Alu -13 299 11 2313 96 0 0 chr6 43143881 43144174 -146135380 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr6 43144290 43144315 -146135239 + (T)n Simple_repeat Simple_repeat 1 25 0 226 189 0 0 chr6 43144472 43144509 -146135045 + AluJo SINE Alu 1 37 -266 1679 127 104 4 chr6 43144509 43144777 -146134777 - AluJb SINE Alu -17 295 1 1505 179 11 11 chr6 43144777 43145050 -146134504 + AluJo SINE Alu 27 299 -13 2207 109 0 40 chr6 43145344 43145666 -146133888 - AluSg SINE Alu -1 309 1 2146 106 6 58 chr6 43145666 43145994 -146133560 - AluSx SINE Alu 0 312 1 956 171 15 68 chr6 43146000 43146159 -146133395 + Tigger3(Golem) DNA MER2_type 2835 2982 -46 2295 116 0 0 chr6 43146159 43146470 -146133084 + AluSx SINE Alu 1 311 -1 956 171 15 68 chr6 43146470 43146515 -146133039 + Tigger3(Golem) DNA MER2_type 2982 3028 0 674 175 19 69 chr6 43146569 43146729 -146132825 + FAM SINE Alu 24 175 -10 1932 142 30 26 chr6 43146899 43147201 -146132353 - AluSx SINE Alu -9 303 1 1536 173 13 33 chr6 43147407 43147713 -146131841 + AluJb SINE Alu 6 305 -7 594 126 202 0 chr6 43147725 43147844 -146131710 - MER7A DNA MER2_type -204 142 2 2291 82 20 10 chr6 43148384 43148676 -146130878 - AluSx SINE Alu -15 297 3 2299 116 0 3 chr6 43149299 43149610 -146129944 + AluSg SINE Alu 1 310 0 1809 180 0 16 chr6 43149625 43149936 -146129618 + AluJo SINE Alu 1 306 -6 1684 40 56 0 chr6 43149947 43150145 -146129409 + AluY SINE Alu 86 294 -17 2330 104 0 25 chr6 43150530 43150848 -146128706 - AluSx SINE Alu -2 310 1 2172 103 24 0 chr6 43151132 43151422 -146128132 + AluSx SINE Alu 1 297 -15 1987 101 57 30 chr6 43151906 43152202 -146127352 - AluSx SINE Alu -8 304 1 311 239 0 14 chr6 43153094 43153165 -146126389 - MER94 DNA DNA 0 134 65 267 297 11 33 chr6 43153174 43153265 -146126289 - MER94 DNA DNA -41 93 5 727 214 0 0 chr6 43153720 43153866 -146125688 + Tigger3(Golem) DNA MER2_type 1 2572 -457 2517 79 0 13 chr6 43153870 43154186 -146125368 - AluSx SINE Alu 0 312 1 1945 144 3 3 chr6 43154222 43154513 -146125041 - AluSx SINE Alu -21 291 1 1741 149 9 72 chr6 43154514 43154682 -146124872 - AluJo SINE Alu -11 301 124 2187 125 0 7 chr6 43154682 43154985 -146124569 - AluSx SINE Alu -11 301 1 195 69 0 0 chr6 43154987 43155016 -146124538 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1996 127 8 0 chr6 43155025 43155293 -146124261 - AluSx SINE Alu -36 276 7 1741 149 9 72 chr6 43155293 43155432 -146124122 - AluJo SINE Alu -197 115 1 374 59 0 0 chr6 43155432 43155483 -146124071 - AluSq/x SINE Alu -167 136 86 1098 231 0 5 chr6 43155483 43155704 -146123850 - AluJo SINE Alu -92 220 1 1902 151 9 35 chr6 43155706 43156023 -146123531 - 7SLRNA srpRNA srpRNA -11 309 1 2319 104 0 3 chr6 43156030 43156328 -146123226 - AluSg SINE Alu -13 297 1 2403 120 112 2 chr6 43156328 43156746 -146122808 + Tigger3(Golem) DNA MER2_type 2563 3026 -3 318 283 175 0 chr6 43157037 43157157 -146122397 - MIR SINE MIR -1 261 121 2247 107 0 3 chr6 43157160 43157450 -146122104 + AluSc SINE Alu 1 289 -20 2548 72 0 0 chr6 43157460 43157766 -146121788 - AluY SINE Alu 0 311 6 455 238 76 86 chr6 43157766 43158047 -146121507 - L1ME4a LINE L1 -1 6120 5843 714 147 0 52 chr6 43158047 43158183 -146121371 - FLAM_A SINE Alu -4 129 1 455 238 76 86 chr6 43158183 43158309 -146121245 - L1ME4a LINE L1 -278 5843 5717 2247 81 0 55 chr6 43158936 43159268 -146120286 - AluSg SINE Alu 0 310 1 387 164 17 103 chr6 43159335 43159451 -146120103 - L2 LINE L2 -20 3293 3188 21 0 0 0 chr6 43159603 43159624 -146119930 + AT_rich Low_complexity Low_complexity 1 21 0 401 119 15 0 chr6 43159628 43159695 -146119859 + AluJ/FLAM SINE Alu 3 70 -242 873 201 6 6 chr6 43159695 43159864 -146119690 + AluJo/FRAM SINE Alu 138 307 -1 2394 98 0 0 chr6 43159864 43160161 -146119393 - AluSq SINE Alu -16 297 1 1629 189 10 3 chr6 43160274 43160565 -146118989 + AluJo SINE Alu 9 301 -11 647 178 7 22 chr6 43160609 43160744 -146118810 - FLAM_C SINE Alu 0 133 1 1758 137 11 32 chr6 43160984 43161268 -146118286 + AluJb SINE Alu 21 298 -14 357 254 94 45 chr6 43161385 43161675 -146117879 - L1M2 LINE L1 -656 5510 5243 * 784 121 25 126 chr6 43161672 43161728 -146117826 - L1MB7 LINE L1 -12 6172 6112 839 130 15 0 chr6 43161728 43161859 -146117695 - FLAM_C SINE Alu 0 133 1 784 121 25 126 chr6 43161859 43162000 -146117554 - L1MB7 LINE L1 -72 6112 5995 843 96 0 17 chr6 43162000 43162115 -146117439 - AluSp/q SINE Alu -19 294 182 489 138 46 0 chr6 43162123 43162210 -146117344 - L1MB7 LINE L1 -200 5984 5894 972 157 7 0 chr6 43162210 43162350 -146117204 - FRAM SINE Alu -36 140 1 2232 107 7 7 chr6 43162520 43162829 -146116725 + AluY SINE Alu 1 309 -2 685 245 7 0 chr6 43162851 43162994 -146116560 - AluJ SINE Alu -31 281 138 1841 146 6 40 chr6 43162994 43163323 -146116231 - pTR5 LTR ERV1 -2055 383 66 263 320 16 31 chr6 43163323 43163451 -146116103 - LTR30 LTR ERV1 -80 642 517 265 0 0 0 chr6 43163451 43163482 -146116072 - pTR5 LTR ERV1 -439 1999 1969 4864 164 52 39 chr6 43163504 43164508 -146115046 - pTR5 LTR ERV1 -679 1759 743 2324 105 0 10 chr6 43164525 43164829 -146114725 - AluSx SINE Alu -11 301 1 24 0 0 0 chr6 43164829 43164853 -146114701 + AT_rich Low_complexity Low_complexity 1 24 0 987 131 0 0 chr6 43164879 43165009 -146114545 - AluJ SINE Alu -171 141 12 2262 80 35 0 chr6 43165050 43165339 -146114215 - AluY SINE Alu -12 299 1 237 289 41 0 chr6 43165340 43165437 -146114117 - L1P LINE L1 -1135 5011 4911 2204 131 3 0 chr6 43165518 43165823 -146113731 - AluSx SINE Alu -6 306 1 353 293 78 48 chr6 43165823 43165990 -146113564 - L1M4 LINE L1 -1732 4414 4243 2231 147 0 0 chr6 43166012 43166324 -146113230 - AluSx SINE Alu 0 312 1 1634 157 111 7 chr6 43166331 43166611 -146112943 - AluSg1 SINE Alu 0 309 1 2496 87 0 0 chr6 43166666 43166966 -146112588 - AluSc SINE Alu -9 300 1 1966 174 0 0 chr6 43166977 43167271 -146112283 - AluJb SINE Alu -18 294 1 698 215 19 68 chr6 43167907 43168112 -146111442 - MLT1J LTR MaLR -78 433 239 370 131 0 0 chr6 43168192 43168253 -146111301 - MER5A DNA MER1_type -80 109 49 253 299 13 13 chr6 43168270 43168347 -146111207 - MLT1J LTR MaLR -298 213 137 2369 100 0 0 chr6 43168536 43168827 -146110727 + AluSg SINE Alu 1 291 -19 2237 113 3 16 chr6 43169021 43169330 -146110224 + AluSg SINE Alu 6 310 0 2337 81 17 7 chr6 43169339 43169635 -146109919 + AluSp SINE Alu 1 299 -14 293 145 32 0 chr6 43169784 43169846 -146109708 + L1MB3 LINE L1 5257 5320 -848 2052 122 10 10 chr6 43169875 43170171 -146109383 - AluJo SINE Alu -16 296 1 401 119 59 153 chr6 43170172 43170290 -146109264 + L1MB3 LINE L1 5461 5567 -616 1857 170 24 83 chr6 43170304 43170545 -146109009 - MER21B LTR ERV1 -3 860 651 6782 39 0 18 chr6 43170545 43171338 -146108216 - SVA Other Other 0 1386 608 1857 170 24 83 chr6 43171338 43171506 -146108048 - MER21B LTR ERV1 -212 651 475 446 88 75 12 chr6 43171506 43171586 -146107968 - LTR23 LTR ERV1 0 437 353 2232 90 7 0 chr6 43171622 43171928 -146107626 - AluSg SINE Alu 0 308 1 1978 150 0 7 chr6 43171947 43172241 -146107313 - AluJo SINE Alu -14 298 7 2341 154 130 2 chr6 43172301 43172724 -146106830 - MER21B LTR ERV1 -386 477 1 2694 114 26 42 chr6 43172724 43172846 -146106708 + L1MB3 LINE L1 5561 5683 -500 2439 67 20 3 chr6 43172846 43173144 -146106410 + AluSq SINE Alu 1 303 -10 2694 114 26 42 chr6 43173144 43173478 -146106076 + L1MB3 LINE L1 5683 6010 -173 1752 164 22 63 chr6 43173478 43173536 -146106018 + MER57A LTR ERV1 7 66 -337 2292 109 3 10 chr6 43173536 43173849 -146105705 + AluSp SINE Alu 1 311 -2 1752 164 22 63 chr6 43173849 43174204 -146105350 + MER57A LTR ERV1 66 403 0 574 205 8 8 chr6 43174204 43174326 -146105228 + L1MB3 LINE L1 6006 6127 -56 2204 192 70 24 chr6 43174667 43175249 -146104305 + pTR5 LTR ERV1 734 1342 -1096 3370 139 57 135 chr6 43175261 43176152 -146103402 + LTR12 LTR ERV1 5 826 0 2085 126 3 3 chr6 43176221 43176507 -146103047 + AluSx SINE Alu 2 287 -25 2392 104 3 0 chr6 43176814 43177123 -146102431 - AluSp SINE Alu -3 310 1 2083 93 3 84 chr6 43177815 43178147 -146101407 - AluSq SINE Alu -8 305 1 2251 90 0 17 chr6 43178149 43178438 -146101116 - AluSq SINE Alu 0 313 30 1681 146 62 31 chr6 43178533 43178821 -146100733 - AluJb SINE Alu -15 297 1 1051 157 13 0 chr6 43179748 43179907 -146099647 - AluJb SINE Alu -18 294 134 2345 108 3 0 chr6 43179937 43180243 -146099311 + AluSx SINE Alu 3 309 -3 2330 112 0 3 chr6 43180243 43180555 -146098999 + AluSx SINE Alu 1 311 -1 663 267 12 6 chr6 43180926 43181087 -146098467 - MER58B DNA MER1_type -1 340 179 186 43 0 0 chr6 43181100 43181123 -146098431 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2327 122 0 0 chr6 43181130 43181442 -146098112 - AluJb SINE Alu 0 312 1 2205 96 11 0 chr6 43181753 43182057 -146097497 - AluSx SINE Alu 0 307 1 209 259 35 0 chr6 43182171 43182229 -146097325 - L2 LINE L2 -1067 2247 2188 1051 241 106 29 chr6 43182447 43182824 -146096730 - MLT1C LTR MaLR -3 464 59 183 42 0 0 chr6 43184181 43184205 -146095349 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1020 80 0 0 chr6 43184548 43184673 -146094881 - AluY SINE Alu -10 301 177 1841 88 4 28 chr6 43184673 43184924 -146094630 - AluY SINE Alu -66 245 1 1597 126 9 0 chr6 43185092 43185315 -146094239 - AluSg/x SINE Alu -3 307 83 1680 172 62 10 chr6 43185376 43185667 -146093887 + AluJb SINE Alu 1 306 -6 1917 152 14 3 chr6 43186351 43186634 -146092920 - AluJo SINE Alu -17 295 10 371 275 96 62 chr6 43187739 43187886 -146091668 - MIR SINE MIR 0 262 107 2335 75 0 0 chr6 43187886 43188164 -146091390 + AluSp SINE Alu 18 295 -18 371 275 96 62 chr6 43188164 43188194 -146091360 - MIR SINE MIR -155 107 79 2115 123 17 3 chr6 43188257 43188557 -146090997 - AluSq SINE Alu -9 304 1 336 85 0 0 chr6 43188558 43188605 -146090949 + MER112 DNA MER1_type 6 52 -208 1081 113 0 0 chr6 43188609 43188751 -146090803 + AluSq/x SINE Alu 5 146 -166 356 154 22 132 chr6 43188751 43188801 -146090753 + MER112 DNA MER1_type 7 61 -199 2263 116 0 0 chr6 43188801 43189095 -146090459 + AluSx SINE Alu 5 298 -14 356 154 22 132 chr6 43189095 43189180 -146090374 + MER112 DNA MER1_type 61 127 -133 269 172 16 0 chr6 43189184 43189248 -146090306 - MER57A LTR ERV1 0 403 339 766 180 8 0 chr6 43189248 43189376 -146090178 + FLAM_C SINE Alu 2 130 -3 1713 140 0 8 chr6 43189401 43189644 -146089910 + AluSx SINE Alu 60 300 -12 2207 123 0 0 chr6 43189725 43190018 -146089536 - AluSx SINE Alu -19 293 1 320 318 40 16 chr6 43190041 43190167 -146089387 + L2 LINE L2 3137 3265 -7 1256 316 70 8 chr6 43190172 43190697 -146088857 + L3 LINE CR1 564 1121 -456 253 331 35 9 chr6 43190711 43191012 -146088542 + L1M3 LINE L1 5126 5436 -732 248 233 44 11 chr6 43191013 43191103 -146088451 + L1ME LINE L1 52 144 -5975 2372 102 0 3 chr6 43191103 43191406 -146088148 + AluSx SINE Alu 1 302 -10 639 152 27 0 chr6 43191591 43191703 -146087851 - FLAM_C SINE Alu 0 143 29 445 313 50 35 chr6 43191853 43192054 -146087500 + L1ME LINE L1 520 723 -5396 1603 154 55 18 chr6 43192294 43192567 -146086987 + AluJb SINE Alu 15 297 -15 231 176 0 0 chr6 43192656 43192690 -146086864 + AluSx SINE Alu 1 34 -266 4044 130 23 140 chr6 43192690 43194170 -146085384 - pTR5 LTR ERV1 0 2606 1524 1741 147 19 4 chr6 43194170 43194266 -146085288 + AluSx SINE Alu 31 124 -188 282 29 0 0 chr6 43194266 43194301 -146085253 + (CA)n Simple_repeat Simple_repeat 2 36 0 1741 147 19 4 chr6 43194301 43194463 -146085091 + AluSx SINE Alu 124 293 -19 1504 166 75 23 chr6 43194496 43194761 -146084793 + AluJb SINE Alu 11 289 -23 227 319 205 6 chr6 43195622 43195788 -146083766 + MIR SINE MIR 20 218 -44 1914 142 7 26 chr6 43195798 43196107 -146083447 - AluJo SINE Alu -6 306 4 770 288 78 33 chr6 43196211 43196493 -146083061 + L1ME LINE L1 680 991 -5128 1726 195 0 13 chr6 43196493 43196795 -146082759 + AluJb SINE Alu 1 298 -14 770 288 78 33 chr6 43196795 43196963 -146082591 + L1ME LINE L1 991 1150 -4969 242 306 59 0 chr6 43197000 43197085 -146082469 - L2 LINE L2 -6 3307 3218 2025 100 64 0 chr6 43197239 43197520 -146082034 + AluSg SINE Alu 12 310 0 265 369 0 0 chr6 43197523 43197672 -146081882 + HAL1 LINE L1 1460 1608 -899 378 248 98 15 chr6 43197758 43197891 -146081663 + L1MC5 LINE L1 7603 7746 -215 5197 146 121 30 chr6 43197899 43199070 -146080484 - MER52C LTR ERV1 0 1278 1 330 327 92 9 chr6 43199091 43199308 -146080246 + L1ME LINE L1 5426 5660 -510 1130 126 0 0 chr6 43199408 43199567 -146079987 - AluSp/q SINE Alu 0 313 155 305 163 0 0 chr6 43199567 43199616 -146079938 - pTR5 LTR ERV1 -1648 790 742 958 140 0 0 chr6 43199616 43199759 -146079795 + AluSg/x SINE Alu 148 290 -22 653 276 112 28 chr6 43199762 43200154 -146079400 + L1MC5 LINE L1 7253 7677 -284 2158 99 3 33 chr6 43200644 43200970 -146078584 + AluSc SINE Alu 1 309 0 1851 90 0 0 chr6 43201064 43201315 -146078239 + AluSg SINE Alu 60 310 0 2314 72 0 4 chr6 43201512 43201790 -146077764 + AluSg SINE Alu 5 281 -29 291 28 0 0 chr6 43201791 43201827 -146077727 + (CA)n Simple_repeat Simple_repeat 2 37 0 1281 336 58 56 chr6 43201842 43201989 -146077565 - HERVL LTR ERVL -2851 2145 2000 1555 184 20 16 chr6 43201989 43202293 -146077261 - AluJo SINE Alu -1 311 7 1281 336 58 56 chr6 43202293 43202483 -146077071 - HERVL LTR ERVL -2996 2000 1812 1945 137 7 11 chr6 43202483 43202790 -146076764 - AluJb SINE Alu 0 306 1 1281 336 58 56 chr6 43202790 43202832 -146076722 - HERVL LTR ERVL -3184 1812 1772 2263 106 6 13 chr6 43202832 43203324 -146076230 - AluSg SINE Alu 0 310 1 1281 336 58 56 chr6 43203324 43204420 -146075134 - HERVL LTR ERVL -3224 1772 736 467 345 0 0 chr6 43204544 43204715 -146074839 - HERVL LTR ERVL -5148 616 446 801 163 8 0 chr6 43204728 43204851 -146074703 - FLAM_C SINE Alu -18 125 2 2199 105 10 7 chr6 43205242 43205538 -146074016 - AluSp SINE Alu -16 297 1 398 228 8 41 chr6 43205556 43205679 -146073875 - LTR41 LTR ERVL -6 767 649 610 178 8 8 chr6 43206191 43206309 -146073245 - LTR41 LTR ERVL -585 188 71 715 176 16 0 chr6 43206331 43206456 -146073098 + FLAM_A SINE Alu 1 127 -6 375 231 75 92 chr6 43206573 43206700 -146072854 + L1M4 LINE L1 4163 4291 -1855 2473 97 0 0 chr6 43206700 43207010 -146072544 - AluSq SINE Alu -3 310 1 375 231 75 92 chr6 43207010 43207089 -146072465 + L1M4 LINE L1 4291 4370 -1776 1835 177 7 3 chr6 43207089 43207389 -146072165 + AluJo SINE Alu 3 303 -9 375 231 75 92 chr6 43207389 43207476 -146072078 + L1M4 LINE L1 4370 4452 -1694 1427 309 77 32 chr6 43207499 43207678 -146071876 + L1M4 LINE L1 10 180 -6362 2230 85 0 7 chr6 43207678 43208013 -146071541 - AluSc SINE Alu 0 333 1 1427 309 77 32 chr6 43208013 43208573 -146070981 + L1M4 LINE L1 180 784 -5758 460 118 35 0 chr6 43208617 43208702 -146070852 + CT-rich Low_complexity Low_complexity 2 89 0 1659 115 0 0 chr6 43208702 43208919 -146070635 - AluSq SINE Alu -95 218 2 231 152 0 0 chr6 43208963 43208996 -146070558 + Alu SINE Alu 1 33 -266 2347 113 0 0 chr6 43209188 43209489 -146070065 + AluSx SINE Alu 1 301 -11 1013 98 0 0 chr6 43209729 43209862 -146069692 + AluSq/x SINE Alu 1 133 -180 2103 146 3 0 chr6 43209939 43210241 -146069313 - AluSg SINE Alu -7 303 1 180 77 0 0 chr6 43211726 43211752 -146067802 + (TC)n Simple_repeat Simple_repeat 2 27 0 999 271 107 22 chr6 43212052 43212509 -146067045 - L2 LINE L2 0 3313 2818 229 320 26 0 chr6 43213146 43213224 -146066330 - MIR3 SINE MIR -20 188 109 247 308 8 17 chr6 43214041 43214158 -146065396 + GA-rich Low_complexity Low_complexity 1 116 0 602 191 7 0 chr6 43214332 43214473 -146065081 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 2385 83 7 0 chr6 43214634 43214934 -146064620 + AluSq SINE Alu 1 302 -11 554 180 0 0 chr6 43214973 43215062 -146064492 + FRAM SINE Alu 22 110 -66 237 33 0 0 chr6 43215528 43215558 -146063996 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 619 244 127 40 chr6 43216747 43217071 -146062483 + L1ME4a LINE L1 5599 5950 -171 24 67 0 0 chr6 43217162 43217207 -146062347 + AT_rich Low_complexity Low_complexity 1 45 0 2366 95 7 7 chr6 43217305 43217609 -146061945 + AluSp SINE Alu 1 304 -9 363 221 0 58 chr6 43217744 43217830 -146061724 + L2 LINE L2 3186 3266 -6 528 290 31 37 chr6 43217942 43218104 -146061450 - MER5B DNA MER1_type -4 174 14 1871 175 14 0 chr6 43218178 43218475 -146061079 + AluJb SINE Alu 1 301 -11 2365 92 3 0 chr6 43218885 43219179 -146060375 + AluSp SINE Alu 2 296 -17 447 246 196 0 chr6 43219866 43220004 -146059550 - MER5A DNA MER1_type 0 189 25 221 330 11 23 chr6 43220028 43220116 -146059438 + L2 LINE L2 3143 3229 -43 1864 133 55 14 chr6 43220798 43221091 -146058463 + AluJb SINE Alu 1 305 -7 39 0 0 0 chr6 43223022 43223061 -146056493 + GC_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr6 43326682 43326724 -145952830 + AT_rich Low_complexity Low_complexity 1 42 0 422 200 19 25 chr6 43326796 43326924 -145952630 - MER63 DNA MER1_type -5 1057 701 268 229 16 0 chr6 43326905 43326966 -145952588 - MER63 DNA MER1_type -864 66 5 * 195 42 0 0 chr6 43327691 43327715 -145951839 + (CAGGA)n Simple_repeat Simple_repeat 1 24 0 266 188 101 0 chr6 43329617 43329686 -145949868 + MER5A DNA MER1_type 28 103 -86 254 144 10 87 chr6 43331199 43331303 -145948251 + GA-rich Low_complexity Low_complexity 3 98 0 216 265 29 0 chr6 43332493 43332561 -145946993 - L2 LINE L2 -3 3310 3241 693 294 117 15 chr6 43332779 43333112 -145946442 + LTR33 LTR ERVL 155 521 0 1238 216 109 11 chr6 43335852 43336199 -145943355 - MER58D DNA MER1_type -2 384 4 256 300 25 25 chr6 43336202 43336282 -145943272 - MIR3 SINE MIR -48 160 81 257 246 33 0 chr6 43336346 43336407 -145943147 - L2 LINE L2 -2 3311 3249 412 195 8 117 chr6 43337670 43337798 -145941756 - MER81 DNA DNA 0 114 1 516 278 133 26 chr6 43338329 43338563 -145940991 - MIR SINE MIR 0 262 4 2634 84 19 3 chr6 43339026 43339394 -145940160 - THE1C LTR MaLR 0 375 2 505 294 119 68 chr6 43339524 43340036 -145939518 + L1ME4a LINE L1 827 6103 -18 543 315 120 0 chr6 43340302 43340626 -145938928 + L1ME4a LINE L1 5526 5888 -233 21 71 0 0 chr6 43340741 43340783 -145938771 + AT_rich Low_complexity Low_complexity 1 42 0 2144 143 0 10 chr6 43341128 43341436 -145938118 + AluSx SINE Alu 1 305 -7 955 277 149 34 chr6 43341453 43342571 -145936983 + L1ME3A LINE L1 4623 5914 -256 2174 120 10 0 chr6 43342622 43342913 -145936641 + AluJb SINE Alu 1 294 -18 2388 92 0 0 chr6 43343043 43343338 -145936216 + AluY SINE Alu 1 295 -16 290 181 0 14 chr6 43343610 43343682 -145935872 + GA-rich Low_complexity Low_complexity 3 73 0 1341 91 5 0 chr6 43343701 43343898 -145935656 - L1PA13 LINE L1 -2 6161 5964 733 212 84 0 chr6 43344052 43344231 -145935323 - MER3 DNA MER1_type -3 206 13 1246 128 90 0 chr6 43344233 43344444 -145935110 - MER30 DNA MER1_type 0 230 1 470 247 114 12 chr6 43345170 43345336 -145934218 - MIR3 SINE MIR -9 199 17 287 259 259 0 chr6 43346050 43346208 -145933346 - MIR SINE MIR -11 251 53 707 211 125 89 chr6 43346248 43346461 -145933093 - L2 LINE L2 -1 3312 3079 1067 237 66 42 chr6 43346461 43346722 -145932832 - MER58B DNA MER1_type -2079 341 68 2101 126 0 3 chr6 43346722 43347029 -145932525 + AluSx SINE Alu 1 306 0 1067 237 66 42 chr6 43347029 43347099 -145932455 - MER58B DNA MER1_type -2352 68 1 707 211 125 89 chr6 43347099 43347254 -145932300 - L2 LINE L2 -234 3079 2931 465 219 76 0 chr6 43347379 43347498 -145932056 + MIR SINE MIR 66 193 -69 223 289 0 0 chr6 43348643 43348688 -145930866 + G-rich Low_complexity Low_complexity 1 45 0 205 266 0 78 chr6 43350182 43350222 -145929332 - MIR SINE MIR -191 71 36 2453 94 0 0 chr6 43350222 43350521 -145929033 - AluY SINE Alu -12 299 1 205 266 0 78 chr6 43350521 43350544 -145929010 - MIR SINE MIR -226 36 13 219 248 137 38 chr6 43350680 43350821 -145928733 + MIR SINE MIR 30 188 -63 387 217 161 56 chr6 43350959 43351120 -145928434 + MER5B DNA MER1_type 1 178 0 2252 109 7 3 chr6 43351716 43352020 -145927534 + AluSx SINE Alu 1 305 -7 191 146 125 42 chr6 43352468 43352516 -145927038 + L2 LINE L2 3184 3235 -37 220 289 0 0 chr6 43352643 43352695 -145926859 - MER5B DNA MER1_type -1 177 126 397 287 125 0 chr6 43352837 43352973 -145926581 + MIR SINE MIR 14 166 -96 525 235 41 59 chr6 43354804 43354974 -145924580 - MIR SINE MIR 0 262 96 199 296 167 8 chr6 43355127 43355259 -145924295 + MIR SINE MIR 67 219 -43 587 226 50 13 chr6 43356780 43356939 -145922615 - MER96B DNA MER1_type? -3 414 250 180 0 0 0 chr6 43357073 43357093 -145922461 + (T)n Simple_repeat Simple_repeat 1 20 0 438 263 220 11 chr6 43357137 43357323 -145922231 - MIR SINE MIR -9 253 29 564 271 78 37 chr6 43358732 43358794 -145920760 + MLT1G1 LTR MaLR 2 60 -535 718 178 167 0 chr6 43358794 43358968 -145920586 + MER3 DNA MER1_type 3 205 -4 564 271 78 37 chr6 43358968 43359123 -145920431 + MLT1G1 LTR MaLR 60 228 -367 687 276 118 72 chr6 43359440 43359871 -145919683 + LTR33 LTR ERVL 1 451 -70 244 323 110 16 chr6 43360040 43360167 -145919387 + L2 LINE L2 3168 3306 -7 1656 171 171 23 chr6 43360203 43360601 -145918953 + MSTB2 LTR MaLR 1 457 0 1103 240 58 58 chr6 43360603 43360716 -145918838 - MLT1I LTR MaLR 0 409 297 1864 189 89 5 chr6 43360716 43361108 -145918446 - MSTB LTR MaLR 0 426 2 1103 240 58 58 chr6 43361108 43361323 -145918231 - MLT1I LTR MaLR -111 298 81 1286 181 86 26 chr6 43361646 43361685 -145917869 + Charlie1b DNA MER1_type 66 101 -2660 2634 53 0 0 chr6 43361685 43361987 -145917567 + AluY SINE Alu 2 303 -8 1286 181 86 26 chr6 43361987 43362295 -145917259 + Charlie1b DNA MER1_type 101 434 -89 806 138 152 33 chr6 43362300 43362531 -145917023 + L1MA8 LINE L1 6042 6288 -3 334 184 9 88 chr6 43362539 43362605 -145916949 + Charlie1b DNA MER1_type 419 474 -2287 2016 154 0 20 chr6 43362605 43362949 -145916605 - MER1B DNA MER1_type 0 337 1 334 184 9 88 chr6 43362949 43362996 -145916558 + Charlie1b DNA MER1_type 474 523 0 2342 223 70 2 chr6 43363846 43364371 -145915183 + MLT1F1 LTR MaLR 1 561 -6 476 273 87 31 chr6 43364506 43364667 -145914887 + LTR33 LTR ERVL 23 192 -329 304 230 79 52 chr6 43365138 43365315 -145914239 + MIR SINE MIR 20 192 -60 306 276 47 55 chr6 43365343 43365470 -145914084 - MIR SINE MIR -136 126 1 2116 121 0 29 chr6 43365739 43366046 -145913508 - AluSq SINE Alu -14 299 2 755 149 0 8 chr6 43366057 43366191 -145913363 - AluSp/q SINE Alu -4 309 177 1095 94 22 0 chr6 43366191 43366329 -145913225 + AluSq/x SINE Alu 10 150 -162 350 241 133 93 chr6 43366380 43366704 -145912850 - MER46C DNA MER2_type -1 337 1 908 232 137 82 chr6 43366941 43367429 -145912125 + LTR33 LTR ERVL 7 521 0 746 275 65 0 chr6 43368070 43368299 -145911255 + MIR SINE MIR 3 246 -16 933 243 110 36 chr6 43368310 43368647 -145910907 + MLT1A1 LTR MaLR 1 362 -3 455 115 39 13 chr6 43370202 43370280 -145909274 + MADE1 DNA Mariner 1 80 0 383 302 112 54 chr6 43370692 43371156 -145908398 + LTR16C LTR ERVL 1 491 0 331 299 117 45 chr6 43371224 43371625 -145907929 + L2 LINE L2 1870 2299 -1015 1953 138 24 7 chr6 43371799 43372088 -145907466 + AluSx SINE Alu 1 294 -18 264 288 56 31 chr6 43372340 43372500 -145907054 - MLT1K LTR MaLR -24 564 401 555 287 48 38 chr6 43372596 43372870 -145906684 - MLT1K LTR MaLR -342 246 2 1103 197 5 0 chr6 43374309 43374507 -145905047 - MER58A DNA MER1_type 0 224 26 807 304 75 23 chr6 43375137 43375443 -145904111 - MLT1J2 LTR MaLR -128 322 1 1684 259 52 15 chr6 43375564 43376023 -145903531 + LTR40a LTR ERVL 42 517 -2 223 180 40 20 chr6 43376212 43376262 -145903292 - MER91C DNA MER1_type -32 108 58 542 221 64 20 chr6 43376287 43376436 -145903118 - HsTC2 DNA Tc2 -7 1891 1729 2033 141 0 7 chr6 43376436 43376740 -145902814 - AluJb SINE Alu -8 304 3 542 221 64 20 chr6 43376740 43376794 -145902760 - HsTC2 DNA Tc2 -169 1729 1679 4129 193 83 55 chr6 43376795 43377233 -145902321 + L1ME1 LINE L1 4102 4526 -1640 4906 102 6 0 chr6 43377233 43377880 -145901674 + L1PA12 LINE L1 5518 6168 0 4129 193 83 55 chr6 43377880 43378994 -145900560 + L1ME1 LINE L1 4526 5686 -480 1209 227 64 0 chr6 43378994 43379245 -145900309 + Tigger7 DNA MER2_type 1 267 -466 642 137 0 39 chr6 43379243 43379345 -145900209 + Tigger7 DNA MER2_type 2490 2587 0 * 1520 214 146 0 chr6 43379345 43379728 -145899826 + L1ME1 LINE L1 5685 6123 -43 330 306 55 22 chr6 43379835 43380018 -145899536 + LTR33 LTR ERVL 332 520 -1 241 273 121 0 chr6 43380042 43380141 -145899413 - MLT1J LTR MaLR -296 215 105 22 35 0 0 chr6 43380431 43380460 -145899094 + AT_rich Low_complexity Low_complexity 1 29 0 650 332 40 20 chr6 43381093 43381233 -145898321 + MIR SINE MIR 3 152 -110 1318 313 35 7 chr6 43381233 43381684 -145897870 + LTR16B LTR ERVL 1 464 0 650 332 40 20 chr6 43381684 43381796 -145897758 + MIR SINE MIR 152 260 -2 598 271 97 10 chr6 43381841 43382048 -145897506 + L1MEd LINE L1 428 652 -5878 696 290 77 0 chr6 43382272 43382493 -145897061 + L1MEd LINE L1 980 1217 -5313 2596 89 40 0 chr6 43382495 43382845 -145896709 - L1PA13 LINE L1 -5 6158 5795 259 311 0 52 chr6 43382964 43383099 -145896455 - LTR16C LTR ERVL -2 489 362 341 222 179 53 chr6 43383595 43383802 -145895752 + L1MEd LINE L1 1329 1561 -4969 22 0 0 0 chr6 43384031 43384053 -145895501 + AT_rich Low_complexity Low_complexity 1 22 0 3714 112 52 2 chr6 43385023 43385594 -145893960 + HSMAR2 DNA Mariner 703 1302 0 321 223 78 28 chr6 43385595 43385714 -145893840 + L1MEd LINE L1 1846 1956 -4584 696 330 95 21 chr6 43386262 43386641 -145892913 + LTR16C LTR ERVL 85 491 0 411 225 109 29 chr6 43386845 43386983 -145892571 - MER104 DNA Tc2 -13 167 19 997 274 114 43 chr6 43387021 43387973 -145891581 + L1MEd LINE L1 2528 3547 -2993 1933 131 10 22 chr6 43388335 43388647 -145890907 + AluSx SINE Alu 1 308 -4 2787 192 133 20 chr6 43388725 43389429 -145890125 + L1MEd LINE L1 415 1198 -5342 4464 153 63 21 chr6 43389437 43390281 -145889273 + L1MB3 LINE L1 5304 6182 -1 2338 98 20 0 chr6 43390288 43390594 -145888960 + AluSx SINE Alu 1 312 0 239 148 91 68 chr6 43390644 43390732 -145888822 + L1MEd LINE L1 1266 1355 -5185 2025 165 39 97 chr6 43390832 43391419 -145888135 + L1MEd LINE L1 1390 1942 -4598 384 201 127 15 chr6 43391426 43391560 -145887994 + L1M4 LINE L1 4417 4565 -1581 313 263 166 23 chr6 43391582 43391757 -145887797 + L1M4 LINE L1 4633 4832 -1314 * 651 282 171 3 chr6 43391743 43392076 -145887478 + L1MEd LINE L1 4254 4642 -1898 2484 113 11 8 chr6 43393121 43393474 -145886080 + THE1A LTR MaLR 1 354 -1 12603 89 6 1 chr6 43393479 43395047 -145884507 + THE1A-int LTR MaLR 5 1580 0 461 0 19 0 chr6 43395047 43395100 -145884454 + THE1A LTR MaLR 1 54 -301 261 270 16 0 chr6 43395124 43395187 -145884367 - HAL1b LINE L1 -466 882 819 560 257 73 14 chr6 43395632 43396030 -145883524 + LTR16B LTR ERVL 1 464 0 509 268 154 22 chr6 43396033 43396391 -145883163 - HAL1 LINE L1 -873 1634 1230 188 196 39 39 chr6 43397595 43397646 -145881908 + L2 LINE L2 2867 2917 -355 941 274 275 27 chr6 43398761 43398988 -145880566 + L2 LINE L2 1989 2158 -1155 2171 97 20 7 chr6 43398988 43399286 -145880268 - AluSq SINE Alu -11 302 1 941 274 275 27 chr6 43399286 43399826 -145879728 + L2 LINE L2 2158 2563 -750 2162 72 0 0 chr6 43399826 43400091 -145879463 - AluY SINE Alu -26 285 21 941 274 275 27 chr6 43400091 43400375 -145879179 + L2 LINE L2 2563 3312 -1 1639 169 32 0 chr6 43400762 43401041 -145878513 + AluJo SINE Alu 1 288 -24 212 254 0 32 chr6 43401557 43401620 -145877934 - L2 LINE L2 -1 3271 3211 243 0 0 0 chr6 43403369 43403396 -145876158 + (T)n Simple_repeat Simple_repeat 1 27 0 282 206 68 14 chr6 43404010 43404083 -145875471 - MLT1K LTR MaLR -3 585 509 319 312 104 8 chr6 43404369 43404494 -145875060 - MLT1K LTR MaLR -408 180 44 1749 194 118 6 chr6 43404613 43404969 -145874585 - MSTD LTR MaLR 0 396 1 909 270 77 51 chr6 43405967 43406460 -145873094 + LTR33 LTR ERVL 15 520 -1 860 243 117 48 chr6 43406878 43407253 -145872301 + MLT1I LTR MaLR 1 401 -8 4194 187 56 37 chr6 43407361 43408206 -145871348 + MER21B LTR ERV1 1 861 -2 671 254 15 63 chr6 43408983 43409188 -145870366 + MLT1F1 LTR MaLR 3 197 -345 * 712 233 135 0 chr6 43409187 43409344 -145870210 + MLT1F1 LTR MaLR 322 517 -50 300 83 104 0 chr6 43409344 43409392 -145870162 - L1MA5A LINE L1 -6 6291 6239 712 233 135 0 chr6 43409392 43409449 -145870105 + MLT1F1 LTR MaLR 517 565 -2 249 222 63 0 chr6 43410235 43410298 -145869256 + LTR33A LTR ERVL 457 523 0 6228 172 41 21 chr6 43411377 43412059 -145867495 - L1PA13 LINE L1 -7 6156 5489 2283 99 14 0 chr6 43412059 43412351 -145867203 + AluSx SINE Alu 1 296 -16 6228 172 41 21 chr6 43412351 43413672 -145865882 - L1PA13 LINE L1 -674 5489 4121 1114 117 13 0 chr6 43413968 43414122 -145865432 - AluSg/x SINE Alu -24 288 133 232 264 99 11 chr6 43414289 43414380 -145865174 + MIR3 SINE MIR 75 173 -35 603 254 40 45 chr6 43414482 43414659 -145864895 - MER5B DNA MER1_type 0 178 3 833 179 91 111 chr6 43415233 43415629 -145863925 - LTR61 LTR ERV1 0 595 208 3175 249 14 8 chr6 43415709 43416424 -145863130 - HERV3 LTR ERV1 0 8426 7708 19069 244 26 35 chr6 43416456 43421091 -145858463 - HERV3 LTR ERV1 -3833 4593 1 728 191 130 125 chr6 43421095 43421496 -145858058 - LTR15 LTR ERV1 -5 590 156 367 293 19 76 chr6 43422646 43422803 -145856751 - MER5A DNA MER1_type -41 148 1 338 297 34 0 chr6 43423359 43423477 -145856077 + LTR16C LTR ERVL 1 122 -369 1045 203 129 0 chr6 43423503 43423744 -145855810 + LTR16C LTR ERVL 188 459 -32 795 195 0 0 chr6 43524888 43525301 -145754253 + (CA)n Simple_repeat Simple_repeat 1 413 0 237 75 57 0 chr6 43525316 43525369 -145754185 + (CA)n Simple_repeat Simple_repeat 2 57 0 364 279 240 0 chr6 43526764 43526972 -145752582 - LTR16C LTR ERVL -58 433 176 295 359 30 24 chr6 43527318 43527485 -145752069 + MIR SINE MIR 49 216 -46 276 250 0 0 chr6 43528071 43528127 -145751427 - MIR SINE MIR -115 147 92 261 227 45 109 chr6 43528516 43528626 -145750928 + MIR SINE MIR 34 146 -62 3207 263 80 26 chr6 43528885 43528924 -145750630 + L2 LINE L2 1612 1647 -1666 2081 132 146 13 chr6 43528924 43529302 -145750252 + MSTA LTR MaLR 1 428 0 3207 263 80 26 chr6 43529302 43530598 -145748956 + L2 LINE L2 1647 3040 -273 2321 134 121 3 chr6 43530598 43530979 -145748575 + MSTB LTR MaLR 1 426 0 3207 263 80 26 chr6 43530979 43531048 -145748506 + L2 LINE L2 3040 3104 -209 475 259 284 5 chr6 43531484 43531685 -145747869 + MIR SINE MIR 6 262 0 533 299 0 7 chr6 43532161 43532308 -145747246 - MIR SINE MIR -99 163 18 870 241 75 17 chr6 43532335 43532701 -145746853 + LTR16C LTR ERVL 40 461 -30 376 223 146 21 chr6 43533087 43533261 -145746293 + MIR SINE MIR 7 193 -15 441 98 63 29 chr6 43533613 43533787 -145745767 + (CA)n Simple_repeat Simple_repeat 1 180 0 491 104 52 23 chr6 43533845 43534018 -145745536 + (CA)n Simple_repeat Simple_repeat 1 178 0 460 157 36 18 chr6 43534097 43534385 -145745169 + (CA)n Simple_repeat Simple_repeat 1 293 0 299 304 50 43 chr6 43535020 43535181 -145744373 + MIR SINE MIR 27 188 -74 195 261 77 39 chr6 43536012 43536142 -145743412 + L2 LINE L2 2840 2974 -339 735 198 208 5 chr6 43536300 43536492 -145743062 + MIR SINE MIR 32 262 0 272 378 112 0 chr6 43538331 43538564 -145740990 + L2 LINE L2 2832 3090 -182 405 283 29 36 chr6 43538735 43538873 -145740681 - L2 LINE L2 -39 3274 3138 202 284 91 23 chr6 43539064 43539152 -145740402 - MIR SINE MIR -55 207 114 189 247 65 13 chr6 43539239 43539316 -145740238 + MIR SINE MIR 65 145 -117 303 331 46 0 chr6 43539753 43539883 -145739671 - MIR SINE MIR -67 195 60 1062 251 125 45 chr6 43540460 43541240 -145738314 + L2 LINE L2 2489 3313 0 453 81 0 0 chr6 43541540 43541602 -145737952 + (CA)n Simple_repeat Simple_repeat 1 62 0 294 290 30 38 chr6 43541849 43541980 -145737574 + MIR SINE MIR 21 150 -112 261 369 49 8 chr6 43542272 43542394 -145737160 - MIR3 SINE MIR -52 156 30 207 0 0 0 chr6 43542954 43542977 -145736577 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 385 330 55 28 chr6 43543145 43543327 -145736227 - MIR3 SINE MIR -16 192 6 802 254 29 0 chr6 43543398 43543603 -145735951 - MIR SINE MIR -50 212 2 197 242 48 16 chr6 43545620 43545682 -145733872 - L2 LINE L2 -1 3271 3208 1321 240 140 14 chr6 43546318 43546747 -145732807 - L2 LINE L2 -3 3310 2828 587 267 155 0 chr6 43547334 43547521 -145732033 + MIR SINE MIR 10 225 -37 1947 155 0 10 chr6 43547521 43547818 -145731736 + AluJb SINE Alu 1 294 -18 1207 107 0 0 chr6 43547818 43547977 -145731577 + AluSx SINE Alu 1 159 -153 312 251 82 76 chr6 43548086 43548258 -145731296 + MIR3 SINE MIR 17 202 -42 243 396 43 11 chr6 43548314 43548501 -145731053 + L2 LINE L2 2018 2210 -1104 513 271 80 63 chr6 43548532 43548834 -145730720 + MLT1I LTR MaLR 71 377 -32 2245 106 3 0 chr6 43548844 43549145 -145730409 - AluSx SINE Alu -6 306 5 2434 46 16 7 chr6 43549156 43549337 -145730217 - AluY SINE Alu -2 309 122 189 0 0 0 chr6 43549337 43549358 -145730196 + (TG)n Simple_repeat Simple_repeat 2 22 0 2434 46 16 7 chr6 43549358 43549482 -145730072 - AluY SINE Alu -189 122 1 186 356 177 23 chr6 43549523 43549868 -145729686 + L2 LINE L2 2268 2665 -649 470 49 49 0 chr6 43549873 43549955 -145729599 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3664 228 97 54 chr6 43550053 43550247 -145729307 - L1MEc LINE L1 -4812 1584 1400 2171 94 7 0 chr6 43550247 43550534 -145729020 - AluSc SINE Alu -6 303 15 3664 228 97 54 chr6 43550534 43551105 -145728449 - L1MEc LINE L1 -4996 1400 855 2061 134 3 3 chr6 43551105 43551404 -145728150 - AluSx SINE Alu -13 299 1 3664 228 97 54 chr6 43551404 43552086 -145727468 - L1MEc LINE L1 -5541 855 69 1628 204 58 25 chr6 43552086 43552448 -145727106 + MLT1A2 LTR MaLR 1 374 0 3664 228 97 54 chr6 43552448 43552472 -145727082 - L1MEc LINE L1 -6327 69 47 947 253 18 22 chr6 43552588 43552817 -145726737 - MIR SINE MIR -33 229 2 194 270 201 48 chr6 43553016 43553205 -145726349 - L2 LINE L2 -228 3044 2827 206 273 107 27 chr6 43553260 43553410 -145726144 - L2 LINE L2 -575 2739 2578 518 284 7 14 chr6 43553512 43553660 -145725894 + MLT1J LTR MaLR 192 338 -173 733 195 0 0 chr6 43553942 43554065 -145725489 + FLAM_A SINE Alu 10 132 -10 215 299 9 84 chr6 43554296 43554333 -145725221 + MIR SINE MIR 164 202 -60 1024 256 104 19 chr6 43554333 43554708 -145724846 - MLT1I LTR MaLR -2 407 1 215 299 9 84 chr6 43554708 43554777 -145724777 + MIR SINE MIR 202 262 0 677 322 54 25 chr6 43554802 43554966 -145724588 - L2 LINE L2 -69 3244 3086 180 111 0 0 chr6 43554966 43554993 -145724561 + (TG)n Simple_repeat Simple_repeat 1 27 0 677 322 54 25 chr6 43554993 43555281 -145724273 - L2 LINE L2 -227 3086 2775 983 291 228 5 chr6 43555309 43556223 -145723331 + L2 LINE L2 2107 3251 -62 2211 122 0 6 chr6 43556223 43556535 -145723019 - AluSx SINE Alu -2 310 1 983 291 228 5 chr6 43556535 43556617 -145722937 + L2 LINE L2 3251 3313 0 291 93 0 0 chr6 43557100 43557143 -145722411 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 2097 267 60 72 chr6 43557620 43557853 -145721701 + L1MEd LINE L1 31 265 -5995 1292 171 14 0 chr6 43557853 43558064 -145721490 - MER20 DNA MER1_type -3 216 3 2097 267 60 72 chr6 43558064 43558658 -145720896 + L1MEd LINE L1 265 876 -5384 1340 193 10 53 chr6 43558658 43558958 -145720596 - AluJb SINE Alu -25 287 1 2097 267 60 72 chr6 43558958 43559475 -145720079 + L1MEd LINE L1 876 1398 -4862 210 256 70 77 chr6 43560503 43560647 -145718907 + MIR SINE MIR 42 187 -63 449 259 58 7 chr6 43561533 43561672 -145717882 + MIR SINE MIR 47 192 -70 234 244 0 0 chr6 43561933 43561978 -145717576 + MIR SINE MIR 42 86 -176 1986 106 23 23 chr6 43561994 43562297 -145717257 - AluJb SINE Alu -9 303 1 1135 228 58 26 chr6 43563476 43563823 -145715731 - LTR37A LTR ERV1 -28 398 41 24 0 0 0 chr6 43564020 43564044 -145715510 + AT_rich Low_complexity Low_complexity 1 24 0 1411 170 121 0 chr6 43564060 43564325 -145715229 + AluJb SINE Alu 1 297 -15 691 204 0 0 chr6 43564380 43564522 -145715032 - L1ME3 LINE L1 -25 6137 5996 839 182 0 0 chr6 43564533 43564665 -145714889 + FLAM_C SINE Alu 1 132 -1 1824 104 65 57 chr6 43564692 43565219 -145714335 + MER51A LTR ERV1 1 616 -18 827 201 13 13 chr6 43565224 43565383 -145714171 + AluJb SINE Alu 153 311 -1 2760 235 54 18 chr6 43565386 43566854 -145712700 - L1ME3 LINE L1 -164 5998 4479 262 302 206 0 chr6 43567139 43567265 -145712289 + MIR SINE MIR 98 249 -13 487 279 169 5 chr6 43567739 43567940 -145711614 - MIR SINE MIR -13 249 16 1353 241 71 21 chr6 43568423 43568804 -145710750 + L2 LINE L2 2912 3311 -2 321 132 0 0 chr6 43568910 43568963 -145710591 - MLT1I LTR MaLR -7 402 350 239 152 22 0 chr6 43570491 43570537 -145709017 + MLT1J LTR MaLR 85 131 -380 2072 121 3 3 chr6 43570688 43570995 -145708559 - AluSq SINE Alu -6 307 1 385 256 43 43 chr6 43571183 43571394 -145708160 - L1MC4 LINE L1 -1 8041 7831 387 291 67 39 chr6 43571471 43571551 -145708003 - L1ME2 LINE L1 -20 6144 6068 2244 92 3 0 chr6 43571551 43571844 -145707710 - AluSq SINE Alu -19 294 1 387 291 67 39 chr6 43571844 43571942 -145707612 - L1ME2 LINE L1 -96 6068 5961 612 271 79 110 chr6 43571945 43572336 -145707218 + MLT1J LTR MaLR 85 463 -48 323 228 22 11 chr6 43572542 43572634 -145706920 - MLT1J LTR MaLR -6 505 413 227 217 0 0 chr6 43573333 43573379 -145706175 + (TAA)n Simple_repeat Simple_repeat 2 47 0 220 274 32 0 chr6 43573419 43573481 -145706073 - MIR SINE MIR -81 181 118 1916 160 0 3 chr6 43573482 43573788 -145705766 + AluJb SINE Alu 1 305 -7 207 0 0 0 chr6 43573798 43573821 -145705733 + (GA)n Simple_repeat Simple_repeat 1 23 0 227 224 122 56 chr6 43573821 43573928 -145705626 - MIR SINE MIR -128 134 21 396 295 29 0 chr6 43573962 43574067 -145705487 + MIR SINE MIR 47 154 -108 266 264 45 73 chr6 43575086 43575196 -145704358 + MIR3 SINE MIR 93 199 -9 494 258 25 0 chr6 43575510 43575630 -145703924 - MIR3 SINE MIR -52 156 34 389 227 84 34 chr6 43575826 43575945 -145703609 - L2 LINE L2 -4 3309 3185 3843 170 87 72 chr6 43575959 43577306 -145702248 - pTR5 LTR ERV1 0 2438 743 347 284 42 21 chr6 43579043 43579197 -145700357 + MER5B DNA MER1_type 15 182 -7 202 213 21 0 chr6 43579751 43579798 -145699756 + L2 LINE L2 3180 3227 -86 207 224 0 20 chr6 43580288 43580337 -145699217 - L2 LINE L2 -2 3311 3264 305 163 51 41 chr6 43581563 43581661 -145697893 + (CAGG)n Simple_repeat Simple_repeat 3 101 0 234 261 34 23 chr6 43583350 43583438 -145696116 - MIR SINE MIR -80 182 94 422 309 53 57 chr6 43583722 43584004 -145695550 + MLT1J2 LTR MaLR 21 301 -149 377 323 106 28 chr6 43584159 43584376 -145695178 + L3 LINE CR1 1272 1505 -72 247 245 46 93 chr6 43584599 43584750 -145694804 + MIR3 SINE MIR 2 145 -63 216 293 29 115 chr6 43585280 43585432 -145694122 + MIR SINE MIR 32 172 -58 850 224 49 37 chr6 43588081 43588327 -145691227 + MIR SINE MIR 14 262 0 206 254 73 0 chr6 43589220 43589275 -145690279 + MIR SINE MIR 108 166 -96 224 333 33 0 chr6 43590094 43590184 -145689370 + MIR SINE MIR 48 140 -68 676 277 66 0 chr6 43590190 43590356 -145689198 + MER45A DNA AcHobo 1 177 -1 343 303 0 5 chr6 43591566 43591762 -145687792 + (CA)n Simple_repeat Simple_repeat 1 194 0 236 302 21 10 chr6 43591814 43591910 -145687644 + (CA)n Simple_repeat Simple_repeat 1 97 0 202 271 0 0 chr6 43592200 43592248 -145687306 + MIR SINE MIR 74 121 -87 315 216 205 0 chr6 43593021 43593119 -145686435 + MIR SINE MIR 38 152 -58 240 143 0 0 chr6 43593245 43593287 -145686267 + (TC)n Simple_repeat Simple_repeat 2 43 0 1362 266 172 10 chr6 43593287 43593322 -145686232 + L2 LINE L2 2149 2177 -1137 2017 153 0 3 chr6 43593322 43593635 -145685919 - AluSx SINE Alu 0 312 1 1362 266 172 10 chr6 43593635 43594226 -145685328 + L2 LINE L2 2177 2877 -437 325 286 90 0 chr6 43594316 43594449 -145685105 - MIR3 SINE MIR -63 145 1 324 308 15 30 chr6 43594814 43594947 -145684607 + G-rich Low_complexity Low_complexity 4 134 0 228 198 25 12 chr6 43594976 43595057 -145684497 + GA-rich Low_complexity Low_complexity 1 82 0 276 252 67 34 chr6 43596469 43596579 -145682975 - MIR3 SINE MIR -72 136 23 571 230 178 0 chr6 43596579 43596731 -145682823 + MER5A DNA MER1_type 4 182 -7 2206 121 0 0 chr6 43597202 43597509 -145682045 + AluSc SINE Alu 1 307 -2 452 256 60 15 chr6 43597766 43597899 -145681655 + MIR3 SINE MIR 9 147 -61 535 238 33 0 chr6 43597977 43598099 -145681455 + L2 LINE L2 3187 3312 -1 288 349 127 0 chr6 43598480 43598606 -145680948 + MIR SINE MIR 118 259 -3 189 171 24 0 chr6 43599170 43599211 -145680343 - MIR SINE MIR -67 141 100 191 157 41 19 chr6 43600870 43600922 -145678632 - MIR SINE MIR -70 138 93 290 304 43 11 chr6 43601177 43601269 -145678285 + MIR SINE MIR 118 212 -50 493 261 128 57 chr6 43601459 43601589 -145677965 - MIR SINE MIR -3 259 107 1845 139 0 46 chr6 43601589 43601892 -145677662 + AluSx SINE Alu 3 291 -21 493 261 128 57 chr6 43601892 43601972 -145677582 - MIR SINE MIR -155 107 34 226 341 146 0 chr6 43602621 43602785 -145676769 - MIR3 SINE MIR -1 207 20 231 146 0 0 chr6 43603640 43603681 -145675873 + (CA)n Simple_repeat Simple_repeat 1 41 0 307 389 0 0 chr6 43603681 43603771 -145675783 + L1MC4 LINE L1 6614 6703 -1339 * 326 366 0 0 chr6 43603712 43603805 -145675749 - L1MC4 LINE L1 -1336 6706 6614 288 242 14 39 chr6 43603926 43604044 -145675510 - MIR SINE MIR -82 126 18 667 238 85 0 chr6 43604431 43604595 -145674959 + MER5B DNA MER1_type 1 178 0 600 257 40 7 chr6 43604598 43604750 -145674804 - MER5B DNA MER1_type -10 168 12 254 321 57 28 chr6 43604784 43604890 -145674664 - MIR SINE MIR -65 197 89 2161 105 3 10 chr6 43604910 43605215 -145674339 - AluSq SINE Alu -10 303 1 305 275 12 0 chr6 43605571 43605651 -145673903 + MER94 DNA DNA 2 82 -52 365 290 59 95 chr6 43605756 43605925 -145673629 + MIR SINE MIR 76 238 -24 292 285 58 80 chr6 43606457 43606594 -145672960 + MIR SINE MIR 10 143 -119 616 318 60 25 chr6 43606641 43606924 -145672630 + L2 LINE L2 3019 3311 -2 1213 166 38 5 chr6 43608220 43608431 -145671123 - MER20 DNA MER1_type -1 218 1 328 259 173 17 chr6 43608456 43608660 -145670894 + MIR SINE MIR 20 261 -1 288 319 88 0 chr6 43609049 43609162 -145670392 + MIR3 SINE MIR 81 203 -5 215 308 0 13 chr6 43609608 43609686 -145669868 + GA-rich Low_complexity Low_complexity 3 79 0 259 303 46 13 chr6 43610614 43610756 -145668798 - MIR SINE MIR -3 205 54 196 268 36 0 chr6 43611987 43612043 -145667511 + L2 LINE L2 3129 3186 -86 776 307 63 8 chr6 43612150 43612388 -145667166 - MIR SINE MIR -5 257 7 401 243 36 18 chr6 43612928 43613031 -145666523 + MIR SINE MIR 26 133 -129 972 211 81 36 chr6 43613031 43613278 -145666276 + MIR SINE MIR 5 262 0 379 230 0 0 chr6 43613653 43613727 -145665827 - MIR SINE MIR -56 152 79 220 243 54 72 chr6 43614079 43614190 -145665364 - L2 LINE L2 -186 3086 2978 216 145 97 16 chr6 43614222 43614284 -145665270 - L2 LINE L2 -26 3246 3180 210 262 0 0 chr6 43614284 43614326 -145665228 + (CA)n Simple_repeat Simple_repeat 1 42 0 769 293 92 9 chr6 43614983 43615212 -145664342 - MIR SINE MIR 0 262 15 476 258 192 0 chr6 43615531 43615713 -145663841 - MIR SINE MIR -17 245 29 244 119 0 51 chr6 43616120 43616179 -145663375 + L1MC4 LINE L1 7029 7084 -958 276 246 148 25 chr6 43616496 43616618 -145662936 - MIR3 SINE MIR -7 201 65 294 328 56 40 chr6 43616851 43617265 -145662289 + L1ME4a LINE L1 5544 5959 -162 504 233 8 17 chr6 43617265 43617385 -145662169 + L2 LINE L2 3194 3312 -1 276 98 24 0 chr6 43618080 43618121 -145661433 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 944 145 0 6 chr6 43618123 43618302 -145661252 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 530 190 8 0 chr6 43618274 43618395 -145661159 + CT-rich Low_complexity Low_complexity 1 122 0 * 334 282 48 24 chr6 43618733 43618857 -145660697 - L2 LINE L2 -14 3299 3173 23 33 0 0 chr6 43619679 43619709 -145659845 + AT_rich Low_complexity Low_complexity 1 30 0 441 54 0 0 chr6 43619921 43619977 -145659577 + (CA)n Simple_repeat Simple_repeat 2 57 0 369 0 0 0 chr6 43620407 43620448 -145659106 + (TG)n Simple_repeat Simple_repeat 1 41 0 201 278 0 0 chr6 43620581 43620635 -145658919 + L2 LINE L2 2932 2985 -328 206 231 0 0 chr6 43621696 43621748 -145657806 + (CA)n Simple_repeat Simple_repeat 1 52 0 360 0 0 0 chr6 43621823 43621863 -145657691 + (CA)n Simple_repeat Simple_repeat 2 41 0 2224 90 0 3 chr6 43622153 43622443 -145657111 - AluSg SINE Alu -21 289 1 339 278 87 8 chr6 43622468 43622594 -145656960 - MIR SINE MIR -113 149 14 462 248 75 6 chr6 43622625 43622782 -145656772 + MIR SINE MIR 6 176 -63 448 238 9 0 chr6 43623006 43623111 -145656443 + MIR SINE MIR 48 153 -109 622 266 18 18 chr6 43623974 43624143 -145655411 + MIR SINE MIR 3 171 -91 275 130 19 0 chr6 43626319 43626373 -145653181 + (CA)n Simple_repeat Simple_repeat 1 55 0 382 173 236 31 chr6 43627405 43627532 -145652022 - L2 LINE L2 -1 3312 3160 687 270 56 0 chr6 43627942 43628157 -145651397 + L1MC4a LINE L1 5659 5885 -1923 327 164 60 129 chr6 43628482 43628598 -145650956 + L1MC5 LINE L1 7611 7718 -243 924 252 35 17 chr6 43629402 43629632 -145649922 + MIR SINE MIR 27 260 -2 311 250 88 0 chr6 43630122 43630190 -145649364 - L2 LINE L2 -1 3312 3239 209 319 82 0 chr6 43630281 43630416 -145649138 + L2 LINE L2 2915 3060 -212 231 61 0 0 chr6 43630938 43630971 -145648583 + (TG)n Simple_repeat Simple_repeat 1 33 0 467 294 211 16 chr6 43631037 43631401 -145648153 - L2 LINE L2 0 3313 2879 296 263 13 0 chr6 43631401 43631477 -145648077 + (TG)n Simple_repeat Simple_repeat 2 78 0 445 340 111 21 chr6 43631986 43632221 -145647333 + MIR SINE MIR 7 262 0 266 367 23 16 chr6 43632232 43632360 -145647194 - MIR SINE MIR -98 164 36 273 297 15 22 chr6 43634569 43634716 -145644838 - L2 LINE L2 0 3272 3126 552 306 85 17 chr6 43634746 43635040 -145644514 + MLT1I LTR MaLR 96 409 0 1073 218 48 4 chr6 43635203 43635432 -145644122 - MIR SINE MIR -1 261 23 214 255 20 0 chr6 43635473 43635524 -145644030 + (CA)n Simple_repeat Simple_repeat 2 53 0 1211 224 108 32 chr6 43636333 43636770 -145642784 + L2 LINE L2 2826 3295 -18 227 355 24 24 chr6 43636780 43636904 -145642650 - MIR SINE MIR -70 192 69 352 129 32 0 chr6 43637758 43637820 -145641734 + MIR SINE MIR 74 137 -71 616 255 111 28 chr6 43638401 43638617 -145640937 - MIR SINE MIR -16 246 13 324 203 54 0 chr6 43638747 43638821 -145640733 + MIR3 SINE MIR 90 167 -41 1752 269 147 38 chr6 43639427 43640141 -145639413 + L2 LINE L2 1936 2774 -540 2281 110 0 0 chr6 43640141 43640451 -145639103 + AluSx SINE Alu 1 310 -2 1752 269 147 38 chr6 43640451 43640655 -145638899 + L2 LINE L2 2774 2954 -360 440 313 0 33 chr6 43640654 43640804 -145638750 + L2 LINE L2 3130 3274 -39 * 500 371 21 49 chr6 43641342 43641730 -145637824 - L2 LINE L2 -7 3265 2889 294 271 47 0 chr6 43641777 43641862 -145637692 - L2 LINE L2 -674 2640 2552 211 323 0 0 chr6 43642208 43642270 -145637284 + MIR SINE MIR 74 135 -73 549 325 118 0 chr6 43642291 43642519 -145637035 - MIR SINE MIR 0 262 8 589 278 96 0 chr6 43643685 43643894 -145635660 - L3 LINE CR1 -68 1509 1281 1737 128 11 29 chr6 43644059 43644340 -145635214 + AluJo SINE Alu 37 312 0 525 271 118 29 chr6 43644394 43644674 -145634880 + L2 LINE L2 2812 3116 -197 416 51 17 0 chr6 43645108 43645167 -145634387 + (CA)n Simple_repeat Simple_repeat 2 61 0 327 25 0 0 chr6 43645401 43645441 -145634113 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 120 0 40 chr6 43647093 43647168 -145632386 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1574 170 103 0 chr6 43647173 43647455 -145632099 - AluJo SINE Alu -1 311 1 820 276 144 18 chr6 43647782 43648365 -145631189 + L2 LINE L2 2665 3312 -1 257 377 27 0 chr6 43648396 43648542 -145631012 + L2 LINE L2 2584 2733 -581 233 275 0 14 chr6 43648888 43648957 -145630597 + L2 LINE L2 3245 3312 -1 282 160 0 0 chr6 43649242 43649292 -145630262 + (CGTG)n Simple_repeat Simple_repeat 1 50 0 212 355 105 8 chr6 43649737 43649861 -145629693 + MIR3 SINE MIR 8 143 -65 313 241 63 38 chr6 43650263 43650392 -145629162 + MIR SINE MIR 101 232 -30 298 255 179 0 chr6 43650393 43650499 -145629055 - L2 LINE L2 0 3313 3189 1676 279 49 24 chr6 43650596 43651188 -145628366 + L1ME3 LINE L1 5556 6162 0 463 268 152 19 chr6 43651975 43652244 -145627310 + L1ME4a LINE L1 5808 6112 -9 434 247 44 31 chr6 43652420 43652589 -145626965 + MIR3 SINE MIR 14 141 -67 2169 116 10 0 chr6 43653133 43653436 -145626118 + AluSx SINE Alu 1 306 -6 308 291 131 17 chr6 43653572 43653747 -145625807 + L1MC/D LINE L1 5567 5761 -2047 1098 113 6 12 chr6 43654757 43654917 -145624637 - AluY SINE Alu -152 159 1 230 108 0 0 chr6 43655849 43655886 -145623668 - L2 LINE L2 -20 3252 3216 202 200 0 0 chr6 43656061 43656096 -145623458 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 375 23 0 0 chr6 43656749 43656793 -145622761 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 224 325 0 0 chr6 43657097 43657174 -145622380 - MIR SINE MIR -139 123 47 665 254 129 0 chr6 43657659 43657860 -145621694 - MIR SINE MIR -29 233 7 242 280 133 13 chr6 43658069 43658144 -145621410 - MIR3 SINE MIR -31 177 94 512 328 68 14 chr6 43658253 43658546 -145621008 + L2 LINE L2 2910 3218 -95 435 240 206 0 chr6 43658588 43658734 -145620820 + MER5B DNA MER1_type 3 178 0 2066 66 0 0 chr6 43659011 43659268 -145620286 - AluY SINE Alu -18 293 37 219 256 233 0 chr6 43660062 43660148 -145619406 - MIR SINE MIR -108 154 49 964 172 146 39 chr6 43660170 43660403 -145619151 + MIR SINE MIR 2 259 -3 1078 219 38 4 chr6 43660904 43661169 -145618385 - MER58 DNA MER1_type -67 274 1 955 322 103 12 chr6 43661268 43661845 -145617709 - L2 LINE L2 -247 3066 2419 673 239 135 57 chr6 43662334 43662397 -145617157 - MIR SINE MIR -11 251 194 2329 99 3 0 chr6 43662397 43662709 -145616845 - AluSq SINE Alu 0 313 1 673 239 135 57 chr6 43662709 43662875 -145616679 - MIR SINE MIR -68 194 4 184 349 12 36 chr6 43662883 43662966 -145616588 + MIR3 SINE MIR 109 189 -19 2336 72 0 0 chr6 43663052 43663342 -145616212 - AluSx SINE Alu -17 295 6 180 353 141 0 chr6 43664703 43664788 -145614766 - MIR SINE MIR -12 250 154 202 200 0 25 chr6 43665934 43665974 -145613580 + C-rich Low_complexity Low_complexity 2 40 0 309 118 0 0 chr6 43665975 43666026 -145613528 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 313 0 31 chr6 43666181 43666277 -145613277 + GA-rich Low_complexity Low_complexity 4 96 0 255 203 0 0 chr6 43666588 43666647 -145612907 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 276 272 46 4 chr6 43668231 43668322 -145611232 - MIR3 SINE MIR -53 155 77 207 0 0 0 chr6 43668696 43668719 -145610835 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 204 259 0 17 chr6 43669095 43669153 -145610401 + MIR SINE MIR 96 152 -56 254 318 42 34 chr6 43669385 43669531 -145610023 - MIR SINE MIR -62 146 46 229 311 10 29 chr6 43669965 43670068 -145609486 + MER20B DNA MER1_type 62 162 -621 685 233 19 13 chr6 43670134 43670293 -145609261 - MIR SINE MIR -27 235 76 234 263 18 0 chr6 43670326 43670383 -145609171 + MIR3 SINE MIR 149 206 -2 378 0 0 0 chr6 43670596 43670638 -145608916 + (CA)n Simple_repeat Simple_repeat 2 43 0 186 71 0 0 chr6 43670959 43670987 -145608567 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 232 292 0 15 chr6 43671224 43671289 -145608265 + CT-rich Low_complexity Low_complexity 6 69 0 1916 137 0 38 chr6 43671615 43671928 -145607626 - AluJb SINE Alu -11 301 1 183 200 133 27 chr6 43672777 43672852 -145606702 + L2 LINE L2 3188 3270 -2 237 232 0 0 chr6 43673502 43673558 -145605996 + L2 LINE L2 3000 3055 -217 1317 263 69 36 chr6 43673902 43674465 -145605089 - L2 LINE L2 -7 3306 2728 23 0 0 0 chr6 43678303 43678326 -145601228 + GC_rich Low_complexity Low_complexity 1 23 0 200 161 16 0 chr6 43679597 43679659 -145599895 + (CGAG)n Simple_repeat Simple_repeat 2 64 0 259 242 0 0 chr6 43680254 43680316 -145599238 - MIR SINE MIR -66 142 81 259 310 0 23 chr6 43681032 43681119 -145598435 + L2 LINE L2 3188 3272 0 289 271 153 0 chr6 43681492 43681610 -145597944 + MIR SINE MIR 34 169 -93 479 330 20 30 chr6 43681610 43681807 -145597747 + MER91A DNA MER1_type 1 195 -1 288 0 0 0 chr6 43681935 43681967 -145597587 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 339 155 0 0 chr6 43682404 43682488 -145597066 + (CA)n Simple_repeat Simple_repeat 2 85 0 216 323 95 25 chr6 43682676 43682834 -145596720 + MIR3 SINE MIR 3 171 -37 325 254 33 49 chr6 43683074 43683196 -145596358 - L3b LINE CR1 -200 1383 1264 799 272 117 20 chr6 43683852 43684150 -145595404 + MER46C DNA MER2_type 12 338 0 206 208 38 19 chr6 43685333 43685386 -145594168 + CT-rich Low_complexity Low_complexity 5 58 0 205 250 0 0 chr6 43686557 43686601 -145592953 + CT-rich Low_complexity Low_complexity 3 46 0 213 232 49 98 chr6 43687005 43687087 -145592467 - MIR SINE MIR -77 185 108 1491 139 24 124 chr6 43687638 43687977 -145591577 + AluYb8 SINE Alu 1 305 -13 201 297 68 0 chr6 43688184 43688258 -145591296 + MIR SINE MIR 102 180 -82 239 250 0 0 chr6 43688565 43688617 -145590937 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 342 0 0 0 chr6 43688625 43688663 -145590891 + (CA)n Simple_repeat Simple_repeat 2 39 0 514 204 90 66 chr6 43689469 43689562 -145589992 + MER5B DNA MER1_type 1 101 -77 669 125 100 25 chr6 43689562 43689682 -145589872 - FLAM_C SINE Alu -4 129 1 514 204 90 66 chr6 43689682 43689755 -145589799 + MER5B DNA MER1_type 101 171 -7 1947 125 51 0 chr6 43690131 43690455 -145589099 + AluSx SINE Alu 1 339 0 234 296 28 9 chr6 43690653 43690744 -145588810 - MIR SINE MIR -55 153 85 843 165 79 82 chr6 43690789 43691056 -145588498 + L1ME3A LINE L1 5827 6092 -78 1663 173 0 26 chr6 43691087 43691393 -145588161 + AluJo SINE Alu 5 302 -10 1769 106 0 46 chr6 43692304 43692586 -145586968 + AluJb SINE Alu 1 269 -43 1162 138 87 0 chr6 43693005 43693201 -145586353 + AluJb SINE Alu 90 302 -10 37 0 0 21 chr6 43693248 43693271 -145586283 + AT_rich Low_complexity Low_complexity 1 23 -24 1685 158 32 44 chr6 43693271 43693587 -145585967 + AluSx SINE Alu 1 312 0 37 0 0 21 chr6 43693587 43693611 -145585943 + AT_rich Low_complexity Low_complexity 23 47 0 1631 194 3 0 chr6 43693723 43694016 -145585538 + AluJo SINE Alu 3 296 -16 295 320 35 55 chr6 43694038 43694294 -145585260 + HAL1b LINE L1 98 348 -1000 * 546 212 94 89 chr6 43694283 43694433 -145585121 + L1MC4 LINE L1 7309 7462 -580 2300 81 3 0 chr6 43694433 43694731 -145584823 - AluY SINE Alu -12 299 1 546 212 94 89 chr6 43694731 43694783 -145584771 + L1MC4 LINE L1 7462 7512 -530 373 218 83 27 chr6 43694784 43694904 -145584650 - L1MC4 LINE L1 -1339 6703 6614 628 212 17 8 chr6 43694905 43695023 -145584531 - FLAM_A SINE Alu -14 119 1 2060 96 14 0 chr6 43695042 43695335 -145584219 + AluSx SINE Alu 1 297 -15 1233 134 0 0 chr6 43695335 43695514 -145584040 + AluSg/x SINE Alu 132 310 0 306 273 115 14 chr6 43696212 43696351 -145583203 - L2 LINE L2 -609 2705 2553 2123 108 0 40 chr6 43696811 43696989 -145582565 - AluSx SINE Alu 0 312 151 2265 96 0 0 chr6 43696989 43697291 -145582263 - AluSg1 SINE Alu -7 302 1 2123 108 0 40 chr6 43697291 43697437 -145582117 - AluSx SINE Alu -161 151 1 1036 112 6 50 chr6 43698095 43698274 -145581280 - AluSg/x SINE Alu -2 308 138 12885 150 21 10 chr6 43698374 43698496 -145581058 - L1MA2 LINE L1 -76 7647 7528 2111 105 20 0 chr6 43698496 43698792 -145580762 + AluSx SINE Alu 3 304 -8 12885 150 21 10 chr6 43698792 43701374 -145578180 - L1MA2 LINE L1 -195 7528 4890 2767 127 9 41 chr6 43701374 43701537 -145578017 + MSTA LTR MaLR 1 168 -260 2416 58 3 0 chr6 43701537 43701832 -145577722 + AluSp SINE Alu 1 296 -17 2767 127 9 41 chr6 43701832 43702110 -145577444 + MSTA LTR MaLR 168 428 0 12885 150 21 10 chr6 43702110 43702871 -145576683 - L1MA2 LINE L1 -2833 4890 4139 2197 122 0 0 chr6 43702872 43703176 -145576378 - AluSx SINE Alu -6 306 3 1915 157 0 7 chr6 43703178 43703343 -145576211 - AluSx SINE Alu -15 297 133 1667 162 0 8 chr6 43703343 43703634 -145575920 - AluSx SINE Alu 0 312 24 1915 157 0 7 chr6 43703634 43703767 -145575787 - AluSx SINE Alu -179 133 1 2898 103 5 8 chr6 43703778 43704354 -145575200 - L1MA2 LINE L1 -3752 3813 3238 346 322 78 16 chr6 43704457 43704650 -145574904 + L1ME LINE L1 5522 5734 -387 303 28 0 0 chr6 43704650 43704686 -145574868 + (TAA)n Simple_repeat Simple_repeat 1 36 0 346 322 78 16 chr6 43704686 43704734 -145574820 + L1ME LINE L1 5734 5778 -343 1732 188 0 6 chr6 43704747 43705061 -145574493 + AluSx SINE Alu 1 312 0 491 185 0 9 chr6 43705061 43705169 -145574385 + GA-rich Low_complexity Low_complexity 3 109 0 5271 80 28 0 chr6 43705175 43705986 -145573568 - L1M1 LINE L1 -4360 3205 2372 1583 128 0 0 chr6 43705987 43706222 -145573332 - AluSg/x SINE Alu -4 308 74 2169 100 3 7 chr6 43706417 43706727 -145572827 - AluSc SINE Alu 0 309 1 1511 175 94 137 chr6 43706739 43707168 -145572386 - L1ME1 LINE L1 -18 6148 5702 1907 147 0 32 chr6 43707168 43707481 -145572073 + AluJo SINE Alu 3 305 -7 1511 175 94 137 chr6 43707481 43707623 -145571931 - L1ME1 LINE L1 -464 5702 5555 1844 154 13 13 chr6 43707623 43707935 -145571619 - AluJb SINE Alu 0 312 1 1511 175 94 137 chr6 43707935 43708018 -145571536 - L1ME1 LINE L1 -611 5555 5303 761 224 14 0 chr6 43708093 43708236 -145571318 - FRAM SINE Alu -4 172 28 1410 140 126 35 chr6 43708245 43708531 -145571023 - AluSx SINE Alu 0 312 1 1335 160 14 45 chr6 43708535 43708719 -145570835 - L1ME1 LINE L1 -865 5281 5093 1990 102 17 17 chr6 43708719 43709043 -145570511 - AluSx SINE Alu 0 312 3 2225 101 0 0 chr6 43709045 43709343 -145570211 - AluSx SINE Alu -14 298 1 1335 160 14 45 chr6 43709343 43709442 -145570112 - L1ME1 LINE L1 -1054 5092 5004 260 51 0 26 chr6 43709442 43709481 -145570073 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 669 198 24 0 chr6 43709481 43709607 -145569947 - FLAM_C SINE Alu -2 141 13 2410 197 26 91 chr6 43709613 43709713 -145569841 - L1ME1 LINE L1 -1201 4945 4840 2473 54 0 0 chr6 43709713 43710011 -145569543 + AluY SINE Alu 1 298 -13 2410 197 26 91 chr6 43710011 43710284 -145569270 - L1ME1 LINE L1 -1306 4840 4551 2019 211 70 20 chr6 43710284 43710322 -145569232 + MLT1C LTR MaLR 2 37 -430 1716 155 3 56 chr6 43710322 43710461 -145569093 + AluJb SINE Alu 1 146 -166 2181 105 0 3 chr6 43710461 43710757 -145568797 + AluSq SINE Alu 1 295 -18 2074 88 0 18 chr6 43710759 43711076 -145568478 + AluSc SINE Alu 1 312 0 2059 92 0 36 chr6 43711077 43711415 -145568139 + AluY SINE Alu 1 311 0 1716 155 3 56 chr6 43711415 43711591 -145567963 + AluJb SINE Alu 146 305 -7 2019 211 70 20 chr6 43711591 43711992 -145567562 + MLT1C LTR MaLR 37 463 -4 2410 197 26 91 chr6 43711992 43712354 -145567200 - L1ME1 LINE L1 -1595 4551 4257 972 117 0 0 chr6 43712431 43712568 -145566986 + AluSx SINE Alu 1 137 -176 2546 58 0 0 chr6 43712906 43713216 -145566338 + AluY SINE Alu 1 310 -1 1025 144 0 39 chr6 43714116 43714130 -145565424 + AluSx SINE Alu 118 131 -181 216 0 0 0 chr6 43714130 43714154 -145565400 + (CA)n Simple_repeat Simple_repeat 1 24 0 1025 144 0 39 chr6 43714154 43714320 -145565234 + AluSx SINE Alu 131 291 -21 2237 105 0 0 chr6 43714335 43714640 -145564914 - AluSg SINE Alu -5 305 1 2188 109 0 0 chr6 43714640 43714942 -145564612 - AluSg SINE Alu -8 302 1 463 336 28 49 chr6 43714951 43715275 -145564279 - L1ME LINE L1 -343 5778 5462 1538 129 0 9 chr6 43715276 43715501 -145564053 + AluSx SINE Alu 1 223 -89 436 179 60 60 chr6 43715577 43715694 -145563860 + AluJo/FLAM SINE Alu 10 126 -186 1446 155 0 12 chr6 43715694 43715775 -145563779 + AluJo SINE Alu 55 135 -177 1888 70 4 16 chr6 43715775 43716032 -145563522 + AluSp SINE Alu 50 303 -10 1446 155 0 12 chr6 43716032 43716195 -145563359 + AluJo SINE Alu 135 296 -16 237 297 143 6 chr6 43716351 43716526 -145563028 - LTR33 LTR ERVL 0 521 323 323 279 26 30 chr6 43716720 43716855 -145562699 - MIR SINE MIR -65 143 45 32 57 0 0 chr6 43717266 43717319 -145562235 + GC_rich Low_complexity Low_complexity 1 53 0 345 240 34 126 chr6 43717875 43718050 -145561504 - L2 LINE L2 -4 3309 3151 419 216 10 0 chr6 43718053 43718155 -145561399 - MER33 DNA MER1_type -1 362 260 2115 97 21 0 chr6 43718155 43718443 -145561111 - AluSp SINE Alu -19 294 1 639 185 53 106 chr6 43718445 43718634 -145560920 - FRAM SINE Alu 0 176 1 974 235 9 0 chr6 43718634 43718864 -145560690 - MER33 DNA MER1_type -92 232 1 649 62 0 0 chr6 43719512 43719592 -145559962 + AluSp/q SINE Alu 214 293 -20 226 324 0 27 chr6 43720566 43720677 -145558877 + C-rich Low_complexity Low_complexity 4 111 0 233 326 12 12 chr6 43720684 43720770 -145558784 - L2 LINE L2 -3 3269 3184 209 156 0 44 chr6 43720823 43720868 -145558686 + C-rich Low_complexity Low_complexity 4 46 0 1787 134 0 75 chr6 43721309 43721520 -145558034 + AluSx SINE Alu 1 181 -131 2196 99 3 0 chr6 43721520 43721814 -145557740 + AluSg SINE Alu 2 296 -14 1787 134 0 75 chr6 43721814 43721922 -145557632 + AluSx SINE Alu 181 296 -16 2345 86 0 0 chr6 43721922 43722224 -145557330 + AluSg SINE Alu 1 302 -8 2243 91 3 0 chr6 43722880 43723176 -145556378 + AluSp SINE Alu 1 297 -16 1076 232 107 40 chr6 43723345 43723605 -145555949 - L2 LINE L2 0 3313 3072 1573 151 23 8 chr6 43723605 43723864 -145555690 - AluSx SINE Alu -20 292 30 1076 232 107 40 chr6 43723864 43724189 -145555365 - L2 LINE L2 -241 3072 2701 2289 86 3 0 chr6 43724535 43724838 -145554716 - AluSp SINE Alu -9 304 1 1976 134 7 7 chr6 43724840 43725145 -145554409 - AluSx SINE Alu -7 305 1 181 314 25 68 chr6 43725337 43725455 -145554099 + L2 LINE L2 3107 3219 -94 2130 110 0 0 chr6 43725616 43725916 -145553638 - AluSx SINE Alu -12 300 1 341 230 35 0 chr6 43726404 43726491 -145553063 - MER94 DNA DNA -14 120 31 1440 237 52 2 chr6 43726495 43726963 -145552591 + L1ME3A LINE L1 5589 6118 -52 289 276 122 10 chr6 43727401 43727499 -145552055 + L2 LINE L2 3200 3308 -5 318 208 30 89 chr6 43729070 43729171 -145550383 + MIR SINE MIR 20 114 -148 2371 47 7 3 chr6 43729266 43729563 -145549991 - AluY SINE Alu -13 298 1 334 297 88 34 chr6 43729833 43729981 -145549573 - L2 LINE L2 -3 3269 3114 1455 280 94 4 chr6 43730105 43730573 -145548981 + MER97a DNA MER1_type? 7 516 -378 2145 94 0 10 chr6 43730825 43731123 -145548431 - AluSx SINE Alu -17 295 1 24 0 0 0 chr6 43731339 43731363 -145548191 + AT_rich Low_complexity Low_complexity 1 24 0 2267 86 0 0 chr6 43731371 43731662 -145547892 - AluSc SINE Alu -18 291 1 1653 166 57 7 chr6 43731877 43732173 -145547381 + AluJb SINE Alu 2 312 0 546 265 69 11 chr6 43732352 43732541 -145547013 - L2 LINE L2 -218 3054 2855 919 251 224 19 chr6 43732565 43732931 -145546623 - MLT1J LTR MaLR -4 507 67 283 306 121 7 chr6 43732976 43733070 -145546484 - L2 LINE L2 -528 2786 2704 2216 106 0 0 chr6 43733070 43733372 -145546182 + AluSg SINE Alu 1 302 -8 283 306 121 7 chr6 43733372 43733576 -145545978 - L2 LINE L2 -610 2704 2357 216 0 0 0 chr6 43733576 43733600 -145545954 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1437 181 11 18 chr6 43733604 43733885 -145545669 - AluJo SINE Alu -33 279 1 420 292 179 15 chr6 43733887 43734001 -145545553 - L2 LINE L2 -954 2360 2266 7570 120 38 35 chr6 43734001 43735273 -145544281 - MER52C LTR ERV1 0 1278 4 420 292 179 15 chr6 43735273 43735483 -145544071 - L2 LINE L2 -1048 2266 1983 558 242 34 7 chr6 43735757 43735822 -145543732 + MLT1J LTR MaLR 1 63 -448 1002 142 80 199 chr6 43735822 43735979 -145543575 + AluJo SINE Alu 1 175 -127 2009 111 17 0 chr6 43735979 43736293 -145543261 + AluSp SINE Alu 1 319 0 1002 142 80 199 chr6 43736293 43736313 -145543241 + AluJo SINE Alu 175 196 -106 2445 55 0 3 chr6 43736313 43736620 -145542934 + AluY SINE Alu 1 306 -5 1002 142 80 199 chr6 43736620 43736763 -145542791 + AluJo SINE Alu 196 286 -16 240 35 0 0 chr6 43736763 43736792 -145542762 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1002 142 80 199 chr6 43736792 43736803 -145542751 + AluJo SINE Alu 286 297 -5 558 242 34 7 chr6 43736803 43736886 -145542668 + MLT1J LTR MaLR 63 153 -358 * 642 191 155 22 chr6 43736883 43736907 -145542647 - LTR40b LTR ERVL -231 288 269 2109 98 11 0 chr6 43736907 43737194 -145542360 - AluSx SINE Alu -22 290 1 642 191 155 22 chr6 43737194 43737432 -145542122 - LTR40b LTR ERVL -250 269 1 639 311 82 10 chr6 43737520 43737804 -145541750 + MLT1L LTR MaLR 267 511 0 209 292 83 14 chr6 43737968 43738040 -145541514 + L3b LINE CR1 1505 1581 -2 412 263 42 8 chr6 43739242 43739360 -145540194 - MIR SINE MIR -14 248 127 1684 151 41 20 chr6 43739434 43739726 -145539828 - AluJb SINE Alu -14 298 1 2207 201 117 10 chr6 43739985 43740473 -145539081 + MLT1F LTR MaLR 1 540 -2 191 182 0 0 chr6 43740547 43740580 -145538974 + L2 LINE L2 2245 2277 -1037 946 221 47 71 chr6 43740740 43741197 -145538357 - MLT1J LTR MaLR -21 490 1 201 118 0 0 chr6 43741255 43741289 -145538265 - MIR SINE MIR -66 142 109 1699 151 3 24 chr6 43741492 43741783 -145537771 + AluSx SINE Alu 1 285 -27 570 15 0 0 chr6 43741783 43741850 -145537704 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 114 0 0 chr6 43741852 43741887 -145537667 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2241 71 0 29 chr6 43742014 43742322 -145537232 + AluY SINE Alu 1 299 -12 618 188 0 83 chr6 43742447 43742591 -145536963 - FLAM_A SINE Alu -1 132 1 357 169 0 0 chr6 43742704 43742763 -145536791 + AluS SINE Alu 1 59 -249 1550 62 0 0 chr6 43742786 43742978 -145536576 - AluY SINE Alu -119 192 1 183 114 0 0 chr6 43743105 43743140 -145536414 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1505 133 4 27 chr6 43743151 43743227 -145536327 + AluJb SINE Alu 60 136 -176 2071 118 7 10 chr6 43743227 43743359 -145536195 + AluSx SINE Alu 2 133 -179 2051 110 7 0 chr6 43743359 43743659 -145535895 + AluSg SINE Alu 1 302 -8 2071 118 7 10 chr6 43743659 43743830 -145535724 + AluSx SINE Alu 133 304 -8 1505 133 4 27 chr6 43743830 43744009 -145535545 + AluJb SINE Alu 136 309 -3 248 0 31 0 chr6 43744009 43744041 -145535513 + (TA)n Simple_repeat Simple_repeat 1 33 0 2262 96 0 16 chr6 43744243 43744556 -145534998 + AluSq SINE Alu 1 308 -5 207 388 10 10 chr6 43745500 43745598 -145533956 + MIR SINE MIR 46 143 -65 1742 174 0 7 chr6 43747689 43747982 -145531572 - AluJo SINE Alu -19 293 3 1694 136 19 48 chr6 43747985 43748152 -145531402 - AluJb SINE Alu -12 300 145 1778 97 60 8 chr6 43748152 43748420 -145531134 - AluSp SINE Alu -14 299 18 1694 136 19 48 chr6 43748420 43748561 -145530993 - AluJb SINE Alu -167 145 1 2241 94 0 0 chr6 43748640 43748937 -145530617 - AluSg SINE Alu -13 297 1 2245 105 0 0 chr6 43748989 43749295 -145530259 - AluSg SINE Alu -4 306 1 1008 305 91 14 chr6 43749306 43749936 -145529618 - L1ME3A LINE L1 -203 5967 5290 306 0 0 0 chr6 43749948 43749982 -145529572 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2221 90 10 0 chr6 43749998 43750298 -145529256 - AluSp SINE Alu -10 303 1 870 153 0 0 chr6 43750298 43750429 -145529125 - AluSq/x SINE Alu -178 135 5 2112 82 4 0 chr6 43750438 43750761 -145528793 - AluY SINE Alu 0 326 3 1750 124 84 0 chr6 43750763 43751036 -145528518 - AluSg SINE Alu -14 296 1 982 177 6 11 chr6 43751036 43751217 -145528337 - AluJo SINE Alu -12 300 121 200 132 26 0 chr6 43751266 43751304 -145528250 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 749 195 0 0 chr6 43752732 43752850 -145526704 - AluJo SINE Alu -188 124 7 272 198 60 102 chr6 43752859 43753026 -145526528 - L1MC5 LINE L1 -36 7925 7766 2297 87 0 3 chr6 43753057 43753356 -145526198 - AluY SINE Alu -13 298 1 375 358 38 7 chr6 43753356 43753644 -145525910 - L1MEd LINE L1 -3289 3093 2797 1895 131 0 4 chr6 43753647 43753922 -145525632 + AluJb SINE Alu 6 279 -33 237 65 0 0 chr6 43753922 43753953 -145525601 + (CAA)n Simple_repeat Simple_repeat 2 32 0 326 228 6 96 chr6 43753958 43753998 -145525556 - L1MEd LINE L1 -3785 2597 2555 2047 130 0 0 chr6 43753998 43754298 -145525256 + AluSx SINE Alu 1 300 -12 326 228 6 96 chr6 43754298 43754424 -145525130 - L1MEd LINE L1 -3827 2555 2446 2181 103 0 3 chr6 43754786 43755088 -145524466 - AluY SINE Alu -8 303 3 1315 79 0 0 chr6 43755225 43755402 -145524152 + AluY SINE Alu 135 311 0 1868 147 7 3 chr6 43755491 43755784 -145523770 - AluJb SINE Alu -18 294 1 2348 85 0 0 chr6 43755865 43756171 -145523383 - AluY SINE Alu -5 306 1 1176 140 55 0 chr6 43756173 43756337 -145523217 - AluSg/x SINE Alu -17 295 117 261 0 0 0 chr6 43756337 43756366 -145523188 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1176 140 55 0 chr6 43756366 43756401 -145523153 - AluSg/x SINE Alu -195 117 85 347 88 0 19 chr6 43756401 43756538 -145523016 - AluY SINE Alu -52 249 59 1272 129 0 10 chr6 43756540 43756733 -145522821 - AluSx SINE Alu -121 191 1 1048 278 40 40 chr6 43756790 43757193 -145522361 - L1ME3A LINE L1 -229 5941 5539 318 326 0 31 chr6 43757210 43757308 -145522246 - L1MEd LINE L1 -4674 1710 1616 25 0 0 0 chr6 43757318 43757343 -145522211 + AT_rich Low_complexity Low_complexity 1 25 0 1884 143 3 27 chr6 43757343 43757644 -145521910 - AluSg SINE Alu -16 294 1 571 310 92 45 chr6 43757751 43757820 -145521734 - L1MEd LINE L1 -4866 1506 1442 2311 95 0 19 chr6 43757820 43757997 -145521557 - AluSx SINE Alu -2 310 140 243 0 0 0 chr6 43758007 43758034 -145521520 + (TA)n Simple_repeat Simple_repeat 1 27 0 2378 56 0 13 chr6 43758034 43758329 -145521225 - AluSx SINE Alu -19 293 1 2311 95 0 19 chr6 43758329 43758467 -145521087 - AluSx SINE Alu -172 140 1 571 310 92 45 chr6 43758467 43759062 -145520492 - L1MEd LINE L1 -4930 1442 811 436 244 83 34 chr6 43759345 43759550 -145520004 + MLT1K LTR MaLR 215 429 -159 189 0 0 0 chr6 43759713 43759734 -145519820 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1880 156 3 0 chr6 43759735 43760023 -145519531 - AluJb SINE Alu -23 289 1 1891 136 31 0 chr6 43760458 43760745 -145518809 - AluSx SINE Alu -16 296 1 2361 53 0 17 chr6 43760756 43761055 -145518499 - AluY SINE Alu -16 295 2 2219 98 3 0 chr6 43761065 43761362 -145518192 - AluSx SINE Alu -14 298 1 1976 137 0 0 chr6 43761373 43761701 -145517853 - AluSx SINE Alu 0 328 1 838 158 23 0 chr6 43761710 43761843 -145517711 - AluJo SINE Alu -176 136 1 363 182 34 34 chr6 43761917 43762005 -145517549 + MIR SINE MIR 98 185 -77 417 214 24 0 chr6 43762303 43762387 -145517167 + MIR SINE MIR 79 164 -98 1610 118 0 0 chr6 43762421 43762642 -145516912 - AluSq SINE Alu -91 222 2 265 122 0 0 chr6 43762643 43762684 -145516870 + MIR SINE MIR 153 193 -69 3801 166 171 16 chr6 43762685 43764078 -145515476 + MER52A LTR ERV1 1 1755 0 2090 119 0 3 chr6 43764137 43764432 -145515122 - AluSx SINE Alu -15 297 4 2013 78 0 106 chr6 43766217 43766548 -145513006 - AluSg SINE Alu -4 306 11 539 258 46 7 chr6 43766566 43766717 -145512837 + MIR SINE MIR 106 262 0 13504 142 40 32 chr6 43766778 43768048 -145511506 + L1M3 LINE L1 1 1259 -6306 3580 84 30 14 chr6 43768048 43768550 -145511004 - MER75 DNA T2_type 0 514 5 13504 142 40 32 chr6 43768550 43769007 -145510547 + L1M3 LINE L1 1259 1711 -5854 483 18 0 0 chr6 43769007 43769063 -145510491 + (GGGAGA)n Simple_repeat Simple_repeat 5 60 0 13504 142 40 32 chr6 43769063 43769674 -145509880 + L1M3 LINE L1 1711 2359 -5206 2215 110 0 0 chr6 43769679 43769980 -145509574 - AluSp SINE Alu -12 301 1 1092 139 38 116 chr6 43770009 43770159 -145509395 + L1M3 LINE L1 3597 3757 -3845 837 159 0 36 chr6 43770159 43770297 -145509257 + AluJo SINE Alu 1 133 -169 1092 139 38 116 chr6 43770297 43770493 -145509061 + L1M3 LINE L1 3757 7010 -592 373 174 29 0 chr6 43770493 43770562 -145508992 + AluJo SINE Alu 119 189 -113 1975 88 0 0 chr6 43770662 43770962 -145508592 + AluY SINE Alu 22 321 0 1018 242 37 86 chr6 43770965 43771177 -145508377 - L1MEc LINE L1 -4839 1445 1224 2196 107 3 3 chr6 43771177 43771487 -145508067 - AluSp SINE Alu -3 310 1 1018 242 37 86 chr6 43771487 43771843 -145507711 - L1MEc LINE L1 -5060 1224 837 273 128 0 0 chr6 43771843 43771882 -145507672 - Alu SINE Alu -263 39 1 2151 104 7 0 chr6 43771889 43772186 -145507368 - AluSq SINE Alu -14 299 1 537 208 167 0 chr6 43772196 43772340 -145507214 - L1MEc LINE L1 -5581 815 648 2046 110 0 3 chr6 43772812 43773104 -145506450 + AluSx SINE Alu 1 291 -21 222 289 7 37 chr6 43773425 43773560 -145505994 + (CCCCG)n Simple_repeat Simple_repeat 4 134 0 247 256 12 23 chr6 43777672 43777758 -145501796 + G-rich Low_complexity Low_complexity 6 90 0 254 250 58 58 chr6 43778826 43778930 -145500624 + MIR3 SINE MIR 94 197 -11 354 252 203 0 chr6 43780294 43780417 -145499137 + MIR SINE MIR 55 202 -60 576 247 163 40 chr6 43781243 43781494 -145498060 + MER5C DNA MER1_type 1 282 -42 184 305 53 76 chr6 43783115 43783246 -145496308 + MIR SINE MIR 93 220 -42 783 161 0 29 chr6 43783304 43783441 -145496113 + FLAM_C SINE Alu 1 133 0 221 200 118 47 chr6 43784230 43784315 -145495239 - MIR SINE MIR -89 119 29 26 64 0 0 chr6 43784419 43784466 -145495088 + GC_rich Low_complexity Low_complexity 1 47 0 1571 88 0 5 chr6 43784972 43785189 -145494365 + AluSg/x SINE Alu 91 306 -4 830 272 19 27 chr6 43785192 43785449 -145494105 - L1ME1 LINE L1 -7 6159 5905 404 198 12 12 chr6 43785452 43785538 -145494016 - L1M4 LINE L1 -1159 4987 4902 355 122 61 37 chr6 43785542 43785624 -145493930 - L1M4 LINE L1 -2171 3975 3892 1412 141 8 17 chr6 43785628 43785862 -145493692 + AluJo SINE Alu 6 237 -75 4328 147 156 89 chr6 43785869 43787160 -145492394 - pTR5 LTR ERV1 0 2438 741 374 153 0 0 chr6 43787171 43787230 -145492324 + AluJo SINE Alu 239 297 -3 291 342 86 13 chr6 43787307 43787459 -145492095 + MIR SINE MIR 38 200 -62 479 191 71 64 chr6 43787482 43787623 -145491931 - L1MCa LINE L1 -2270 4156 4015 1928 145 0 7 chr6 43787624 43787928 -145491626 - AluJb SINE Alu -10 302 1 374 229 0 0 chr6 43787928 43787998 -145491556 - AluSp SINE Alu -100 203 134 180 0 0 0 chr6 43788013 43788033 -145491521 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 845 145 14 0 chr6 43788033 43788160 -145491394 - FRAM SINE Alu -163 149 18 735 167 68 12 chr6 43788160 43788322 -145491232 - L1M4 LINE L1 -2403 3743 3573 806 256 0 28 chr6 43788324 43788335 -145491219 - AluJo/FRAM SINE Alu -1 311 301 1900 102 65 14 chr6 43788335 43788628 -145490926 - AluSx SINE Alu 0 312 5 806 256 0 28 chr6 43788628 43788796 -145490758 - AluJo/FRAM SINE Alu -11 301 137 2155 111 0 13 chr6 43788801 43789107 -145490447 - AluSc SINE Alu -7 302 1 2565 233 63 20 chr6 43789108 43789183 -145490371 - L1M4 LINE L1 -2572 3574 3504 2001 117 3 13 chr6 43789183 43789482 -145490072 - AluSq SINE Alu -17 296 1 2565 233 63 20 chr6 43789482 43789798 -145489756 - L1M4 LINE L1 -2642 3504 3203 2104 99 7 7 chr6 43789798 43790090 -145489464 - AluSx SINE Alu -20 292 1 2565 233 63 20 chr6 43790090 43790526 -145489028 - L1M4 LINE L1 -2943 3203 2711 1013 183 48 39 chr6 43790511 43790741 -145488813 - L1MCa LINE L1 -2419 4007 3776 * 812 216 12 75 chr6 43790736 43790884 -145488670 - L1MCa LINE L1 -3381 3045 2918 * 1962 92 65 0 chr6 43790884 43791176 -145488378 - AluSp SINE Alu -1 312 2 812 216 12 75 chr6 43791176 43791281 -145488273 - L1MCa LINE L1 -3508 2918 2808 286 209 30 0 chr6 43791291 43791358 -145488196 + L1MA7 LINE L1 5898 5966 -325 1516 68 0 5 chr6 43791362 43791554 -145488000 + AluY SINE Alu 1 191 -120 488 90 0 0 chr6 43791554 43791621 -145487933 + AluY SINE Alu 236 302 -10 532 171 8 14 chr6 43791621 43791840 -145487714 + L1MA7 LINE L1 5964 6287 -4 1339 189 34 45 chr6 43791875 43792166 -145487388 + AluJb SINE Alu 1 288 -24 269 223 136 10 chr6 43792167 43792270 -145487284 - L1M4 LINE L1 -470 5714 5599 519 239 5 0 chr6 43792741 43792863 -145486691 - L1M4 LINE L1 -564 5600 5473 841 281 30 7 chr6 43792869 43793139 -145486415 - L1MCa LINE L1 -3628 2798 2523 926 66 0 0 chr6 43793142 43793263 -145486291 - AluY SINE Alu -8 303 183 1854 50 0 0 chr6 43793264 43793485 -145486069 - AluY SINE Alu -90 221 1 2184 102 3 0 chr6 43793525 43793829 -145485725 - AluSx SINE Alu -7 305 1 229 241 58 58 chr6 43794078 43794165 -145485389 - L2 LINE L2 -3 3269 3183 200 159 0 45 chr6 43794216 43794260 -145485294 + C-rich Low_complexity Low_complexity 5 46 0 1348 148 0 10 chr6 43794702 43794911 -145484643 + AluSx SINE Alu 1 207 -105 2308 91 3 0 chr6 43794913 43795221 -145484333 + AluSg SINE Alu 2 310 0 2439 50 0 0 chr6 43795226 43795528 -145484026 + AluY SINE Alu 1 302 -9 1368 199 3 27 chr6 43795538 43795835 -145483719 + AluJo SINE Alu 1 290 -22 389 218 20 0 chr6 43795836 43795937 -145483617 + L1MEc LINE L1 2245 2347 -4049 1474 61 0 0 chr6 43795940 43796141 -145483413 - AluY SINE Alu 0 302 102 210 51 115 0 chr6 43796141 43796219 -145483335 + (TA)n Simple_repeat Simple_repeat 1 87 0 319 302 38 9 chr6 43796222 43796328 -145483226 - L1MCa LINE L1 -4307 2119 2011 333 0 0 0 chr6 43796364 43796398 -145483156 + (TG)n Simple_repeat Simple_repeat 1 71 0 333 0 0 0 chr6 43796398 43796435 -145483119 + (TG)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr6 43796830 43796858 -145482696 + (CA)n Simple_repeat Simple_repeat 1 28 0 1060 139 11 6 chr6 43796858 43797038 -145482516 + AluSq SINE Alu 130 310 -3 783 236 5 31 chr6 43797048 43797239 -145482315 + AluJo SINE Alu 1 186 -126 502 177 0 15 chr6 43797239 43797336 -145482218 - AluJ/FLAM SINE Alu -233 69 1 28 22 0 22 chr6 43797343 43797370 -145482184 + AT_rich Low_complexity Low_complexity 1 28 -17 1774 159 3 0 chr6 43797370 43797660 -145481894 - AluJo SINE Alu -21 291 1 28 22 0 22 chr6 43797660 43797678 -145481876 + AT_rich Low_complexity Low_complexity 28 45 0 2606 39 0 3 chr6 43798490 43798801 -145480753 - AluY SINE Alu -1 310 1 206 384 31 45 chr6 43799642 43799866 -145479688 - L2 LINE L2 -343 2971 2751 289 242 20 30 chr6 43799912 43800011 -145479543 - L2 LINE L2 -1358 1956 1859 1951 84 0 18 chr6 43800100 43800374 -145479180 + AluSc SINE Alu 28 296 -13 2026 123 0 7 chr6 43800534 43800826 -145478728 - AluSx SINE Alu -22 290 1 350 248 69 0 chr6 43800936 43801037 -145478517 + MIR3 SINE MIR 93 200 -8 183 80 0 0 chr6 43801460 43801485 -145478069 + (T)n Simple_repeat Simple_repeat 1 25 0 1941 108 31 14 chr6 43801645 43801933 -145477621 - AluSx SINE Alu -12 300 8 563 170 9 0 chr6 43801935 43802041 -145477513 - FRAM SINE Alu -14 162 56 239 267 44 105 chr6 43802051 43802366 -145477188 - L1M4 LINE L1 -1221 4925 4630 219 291 106 34 chr6 43802533 43802712 -145476842 + L2 LINE L2 2721 2912 -402 260 276 196 5 chr6 43802950 43803095 -145476459 - MIR SINE MIR -66 196 21 2383 79 0 0 chr6 43808792 43809097 -145470457 - AluSg SINE Alu -5 305 1 22 0 0 0 chr6 43810127 43810149 -145469405 + AT_rich Low_complexity Low_complexity 1 22 0 2015 145 3 0 chr6 43811671 43811975 -145467579 - AluSx SINE Alu -7 305 1 2111 94 42 0 chr6 43812384 43812671 -145466883 - AluSq SINE Alu -12 301 3 27 0 0 0 chr6 43813535 43813562 -145465992 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 43813961 43813988 -145465566 + AT_rich Low_complexity Low_complexity 1 27 0 1857 141 3 0 chr6 43814879 43815162 -145464392 + AluJb SINE Alu 1 284 -28 494 254 144 35 chr6 43815549 43815750 -145463804 + MIR SINE MIR 5 227 -35 1138 229 78 14 chr6 43815832 43816116 -145463438 - AluJb SINE Alu 0 302 1 710 165 18 0 chr6 43816174 43816283 -145463271 + AluJb SINE Alu 171 281 -31 250 234 0 65 chr6 43816297 43816374 -145463180 - L1ME LINE L1 -305 5816 5745 939 154 0 0 chr6 43816386 43816556 -145462998 - AluSg/x SINE Alu 0 303 134 2080 115 3 0 chr6 43816556 43816851 -145462703 - AluSx SINE Alu -14 298 3 243 314 88 42 chr6 43816854 43817093 -145462461 - L1ME LINE L1 -393 5728 5479 2017 110 11 0 chr6 43817107 43817389 -145462165 - AluSx SINE Alu -19 293 9 313 260 67 58 chr6 43817414 43817637 -145461917 - L1ME LINE L1 -293 5828 5604 47 67 0 0 chr6 43818164 43818253 -145461301 + AT_rich Low_complexity Low_complexity 1 89 0 209 313 70 17 chr6 43818323 43818438 -145461116 + L2 LINE L2 3181 3301 -12 1589 205 3 0 chr6 43818647 43818954 -145460600 - AluJo SINE Alu -2 310 3 200 255 0 0 chr6 43819526 43819577 -145459977 + C-rich Low_complexity Low_complexity 6 56 0 1543 192 11 3 chr6 43819594 43819880 -145459674 - AluJb SINE Alu -24 288 1 1018 96 0 7 chr6 43819880 43820016 -145459538 - AluJb SINE Alu -177 135 1 21 0 0 0 chr6 43820019 43820040 -145459514 + AT_rich Low_complexity Low_complexity 1 21 0 2127 109 3 0 chr6 43820040 43820334 -145459220 + AluSx SINE Alu 2 296 -16 760 196 0 15 chr6 43820387 43820520 -145459034 - FLAM_C SINE Alu -11 132 2 23 0 0 0 chr6 43820708 43820731 -145458823 + AT_rich Low_complexity Low_complexity 1 23 0 1747 149 16 13 chr6 43820835 43821144 -145458410 + AluJo SINE Alu 1 310 -2 1358 191 11 15 chr6 43821614 43821876 -145457678 + AluJo SINE Alu 35 295 -17 1976 121 0 0 chr6 43821886 43822166 -145457388 + AluJb SINE Alu 1 280 -32 309 51 0 0 chr6 43822171 43822210 -145457344 + (CATA)n Simple_repeat Simple_repeat 2 40 0 265 346 0 30 chr6 43822223 43822324 -145457230 - L2 LINE L2 0 3313 3216 2220 81 7 3 chr6 43822530 43822826 -145456728 - AluY SINE Alu -14 297 1 1799 91 35 97 chr6 43823142 43823325 -145456229 - AluSg SINE Alu -11 299 143 261 0 0 0 chr6 43823325 43823354 -145456200 + (TA)n Simple_repeat Simple_repeat 1 29 0 1799 91 35 97 chr6 43823354 43823489 -145456065 - AluSg SINE Alu -167 143 1 1768 148 14 7 chr6 43823674 43823971 -145455583 + AluJb SINE Alu 1 299 -13 690 161 40 16 chr6 43824215 43824339 -145455215 - FLAM_A SINE Alu -6 127 1 1639 101 21 116 chr6 43825027 43825220 -145454334 - AluJo SINE Alu -6 296 145 1935 125 17 0 chr6 43825220 43825509 -145454045 + AluSx SINE Alu 3 296 -16 1639 101 21 116 chr6 43825509 43825642 -145453912 - AluJo SINE Alu -157 145 1 342 302 0 0 chr6 43826613 43826742 -145452812 - L1ME3A LINE L1 -287 5883 5755 1646 233 125 24 chr6 43826872 43827369 -145452185 + MLT1H LTR MaLR 3 549 0 207 0 0 0 chr6 43827625 43827648 -145451906 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1421 151 9 0 chr6 43827658 43827883 -145451671 - AluJb SINE Alu -44 268 42 408 216 75 114 chr6 43827888 43828045 -145451509 - L1ME3A LINE L1 -903 5243 5096 2170 90 7 10 chr6 43828045 43828355 -145451199 + AluSx SINE Alu 1 309 -3 408 216 75 114 chr6 43828355 43828424 -145451130 - L1ME3A LINE L1 -1050 5096 5026 310 330 85 45 chr6 43828489 43828665 -145450889 - L1ME3A LINE L1 -1331 4815 4633 782 182 6 94 chr6 43828679 43828860 -145450694 - AluJb SINE Alu -65 247 83 765 259 68 46 chr6 43828866 43829280 -145450274 - L1ME3A LINE L1 -1812 4334 3912 1206 208 14 0 chr6 43829348 43829560 -145449994 + MER58A DNA MER1_type 1 215 -9 1999 128 10 3 chr6 43829565 43829870 -145449684 + AluSq SINE Alu 1 307 -6 797 177 15 0 chr6 43829880 43830010 -145449544 + FLAM_C SINE Alu 2 133 0 188 32 97 0 chr6 43830010 43830041 -145449513 + GA-rich Low_complexity Low_complexity 1 34 0 1909 142 3 40 chr6 43830242 43830566 -145448988 - AluJb SINE Alu 0 312 1 2221 117 3 7 chr6 43830570 43830878 -145448676 - AluSx SINE Alu -5 307 1 921 278 91 60 chr6 43830920 43831858 -145447696 - L1ME3A LINE L1 -2751 3395 2429 738 198 8 0 chr6 43832725 43832851 -145446703 + FLAM_A SINE Alu 4 130 -3 21 57 0 0 chr6 43832851 43832886 -145446668 + AT_rich Low_complexity Low_complexity 1 35 0 1839 140 11 0 chr6 43832891 43833176 -145446378 + AluJo SINE Alu 1 288 -24 927 111 100 6 chr6 43833251 43833431 -145446123 + L1MC1 LINE L1 2268 2464 -3962 2273 115 3 6 chr6 43833431 43833744 -145445810 + AluSx SINE Alu 1 312 0 1710 171 3 20 chr6 43833768 43834073 -145445481 + AluJb SINE Alu 1 300 -12 7635 213 100 68 chr6 43834073 43834693 -145444861 + L1MC1 LINE L1 2462 3061 -3365 957 150 0 0 chr6 43834693 43834826 -145444728 + FLAM_C SINE Alu 1 133 0 7635 213 100 68 chr6 43834826 43835545 -145444009 + L1MC1 LINE L1 3061 3755 -2671 1645 188 3 3 chr6 43835545 43835842 -145443712 + AluJo SINE Alu 1 297 -15 2108 116 3 0 chr6 43835842 43836126 -145443428 + AluSx SINE Alu 1 285 -27 7635 213 100 68 chr6 43835843 43836138 -145443416 + L1MC1 LINE L1 3755 4039 -2387 189 0 0 0 chr6 43836138 43836159 -145443395 + (CCA)n Simple_repeat Simple_repeat 1 21 0 7635 213 100 68 chr6 43836159 43837691 -145441863 + L1MC1 LINE L1 4039 5443 -983 1237 169 67 24 chr6 43837689 43837713 -145441841 + L1MC1 LINE L1 5732 5754 -729 * 2247 107 3 3 chr6 43837713 43838012 -145441542 + AluSx SINE Alu 1 299 -13 1237 169 67 24 chr6 43838012 43838237 -145441317 + L1MC1 LINE L1 5754 5978 -505 466 128 81 0 chr6 43838226 43838312 -145441242 - L1M4 LINE L1 -1300 4846 4754 * 3511 138 17 44 chr6 43838312 43838479 -145441075 + L1MC1 LINE L1 5980 6150 -463 1997 144 0 25 chr6 43838479 43838798 -145440756 + AluSx SINE Alu 1 311 -1 3511 138 17 44 chr6 43838798 43839268 -145440286 + L1MC1 LINE L1 6150 6600 -13 1187 59 0 0 chr6 43839275 43839410 -145440144 + AluY SINE Alu 1 135 -176 2416 78 3 0 chr6 43839410 43839705 -145439849 + AluSp SINE Alu 1 296 -17 970 131 0 0 chr6 43839735 43839865 -145439689 + AluSq/x SINE Alu 1 130 -182 2000 138 0 20 chr6 43839865 43840170 -145439384 + AluSx SINE Alu 1 299 -13 242 375 42 10 chr6 43840467 43840563 -145438991 - MIR SINE MIR -72 136 38 303 200 0 0 chr6 43841057 43841112 -145438442 - L1MC/D LINE L1 -871 5488 5434 197 164 55 73 chr6 43841281 43841336 -145438218 + L3b LINE CR1 1522 1575 -8 761 180 29 7 chr6 43841618 43841757 -145437797 - AluJo SINE Alu -169 143 2 2318 235 149 39 chr6 43842266 43843143 -145436411 - L2 LINE L2 -346 2968 1995 413 224 224 0 chr6 43843173 43843316 -145436238 + MLT1G LTR MaLR 410 584 -6 28 0 0 0 chr6 43843561 43843589 -145435965 + AT_rich Low_complexity Low_complexity 1 28 0 564 253 40 87 chr6 43843933 43844326 -145435228 - L1MC4a LINE L1 -396 5766 5691 938 130 0 30 chr6 43844326 43844457 -145435097 - FLAM_C SINE Alu -6 127 1 564 253 40 87 chr6 43844457 43844524 -145435030 - L1MC4a LINE L1 -471 5691 5622 4480 153 56 65 chr6 43844681 43845615 -145433939 - MER21A LTR ERV1 -6 925 1 2119 121 10 3 chr6 43845810 43846116 -145433438 - AluSg SINE Alu -2 308 1 1879 148 14 10 chr6 43846146 43846443 -145433111 + AluJb SINE Alu 1 298 -14 2095 109 3 3 chr6 43846750 43847066 -145432488 + AluSx SINE Alu 1 316 0 226 247 55 0 chr6 43847340 43847413 -145432141 + L1MC4 LINE L1 7419 7495 -547 623 195 8 0 chr6 43847417 43847535 -145432019 + MER3 DNA MER1_type 41 159 -50 292 213 0 0 chr6 43847554 43847601 -145431953 - MER66B LTR ERV1 -140 346 300 439 209 0 33 chr6 43847620 43847711 -145431843 - MER3 DNA MER1_type -121 88 1 460 251 38 93 chr6 43847717 43847829 -145431725 + L1MC5 LINE L1 7344 7461 -500 2450 68 3 0 chr6 43847829 43848123 -145431431 - AluY SINE Alu -16 295 1 460 251 38 93 chr6 43848123 43848377 -145431177 + L1MC5 LINE L1 7461 7690 -271 2732 133 54 9 chr6 43848405 43848848 -145430706 + L1PA16 LINE L1 5703 6165 -1 1800 175 20 0 chr6 43848885 43849188 -145430366 + AluJb SINE Alu 1 309 -3 233 109 22 0 chr6 43849191 43849237 -145430317 + GA-rich Low_complexity Low_complexity 2 48 0 344 257 74 35 chr6 43849240 43849442 -145430112 + L1MC4 LINE L1 7824 8033 -9 2051 125 7 7 chr6 43849667 43849964 -145429590 + AluSx SINE Alu 1 297 -15 800 188 20 7 chr6 43850014 43850163 -145429391 - FRAM SINE Alu -25 151 1 1610 155 84 18 chr6 43850819 43851103 -145428451 - AluJo SINE Alu -7 305 3 355 141 26 250 chr6 43852123 43852193 -145427361 + Charlie8 DNA MER1_type 61 145 -2272 2246 98 0 0 chr6 43852193 43852479 -145427075 - AluSx SINE Alu -10 302 17 4350 164 48 77 chr6 43852481 43852845 -145426709 - LTR13 LTR ERVK 0 954 581 2453 73 7 3 chr6 43852845 43853147 -145426407 + AluSc SINE Alu 1 303 -6 4350 164 48 77 chr6 43853147 43853765 -145425789 - LTR13 LTR ERVK -373 581 1 355 141 26 250 chr6 43853765 43853847 -145425707 + Charlie8 DNA MER1_type 146 181 -2236 527 176 0 20 chr6 43853854 43853956 -145425598 - L1MA9 LINE L1 -5 6307 6208 364 104 75 0 chr6 43854023 43854090 -145425464 - L1ME4a LINE L1 -1 6120 6049 852 172 35 0 chr6 43854125 43854270 -145425284 - FRAM SINE Alu -17 159 10 267 203 0 0 chr6 43854793 43854867 -145424687 + (TA)n Simple_repeat Simple_repeat 1 74 0 2387 82 0 0 chr6 43854883 43855175 -145424379 - AluSq SINE Alu -21 292 1 6551 53 2 0 chr6 43855250 43856039 -145423515 - L1PA5 LINE L1 -4 6150 5360 1936 171 0 13 chr6 43856110 43856425 -145423129 + AluJb SINE Alu 2 312 0 2197 126 0 0 chr6 43856456 43856749 -145422805 - AluSx SINE Alu -19 293 1 684 177 106 7 chr6 43857255 43857396 -145422158 - MER2 DNA MER2_type 0 345 191 285 150 133 33 chr6 43857414 43857474 -145422080 - Tigger2 DNA MER2_type -2 2716 2651 1297 148 8 66 chr6 43857475 43857718 -145421836 - AluJo SINE Alu -21 291 63 2251 114 43 48 chr6 43857733 43858126 -145421428 - Tigger2 DNA MER2_type -61 2657 2267 467 129 0 14 chr6 43858109 43858179 -145421375 - Tigger2 DNA MER2_type -2649 69 1 * 1016 179 0 12 chr6 43858179 43858346 -145421208 - MER2 DNA MER2_type -157 188 24 227 191 0 0 chr6 43859055 43859097 -145420457 - L1ME4a LINE L1 -106 6015 5974 306 203 110 76 chr6 43859134 43859252 -145420302 + MIR SINE MIR 47 168 -94 2112 104 24 7 chr6 43859951 43860249 -145419305 + AluSx SINE Alu 1 303 -9 1406 181 105 11 chr6 43860253 43860529 -145419025 + AluJo SINE Alu 1 302 0 305 100 20 0 chr6 43860545 43860595 -145418959 + (GA)n Simple_repeat Simple_repeat 1 51 0 30 0 0 0 chr6 43861007 43861037 -145418517 + AT_rich Low_complexity Low_complexity 1 30 0 879 144 8 0 chr6 43861349 43861481 -145418073 - FLAM_A SINE Alu 0 133 1 470 133 33 0 chr6 43861498 43861588 -145417966 - L1MA5 LINE L1 -2 6298 6206 1827 94 70 0 chr6 43861603 43861874 -145417680 + AluSx SINE Alu 23 310 0 1433 205 55 3 chr6 43861938 43862284 -145417270 - L1 LINE L1 -752 5394 5031 205 390 0 0 chr6 43864106 43864183 -145415371 + L2 LINE L2 3237 3313 0 531 223 89 19 chr6 43864454 43864611 -145414943 - LTR67 LTR ERVL -7 550 383 576 214 144 6 chr6 43865034 43865183 -145414371 - MER5A DNA MER1_type -13 176 4 775 188 7 36 chr6 43865208 43865346 -145414208 + MER58A DNA MER1_type 37 170 -54 727 270 203 22 chr6 43865520 43865875 -145413679 + MLT1L LTR MaLR 123 541 -74 233 281 124 41 chr6 43866036 43866157 -145413397 - MIR3 SINE MIR -72 136 6 225 0 0 0 chr6 43867884 43867909 -145411645 + (A)n Simple_repeat Simple_repeat 1 25 0 1746 150 45 17 chr6 43868862 43869149 -145410405 + AluJo SINE Alu 1 295 -17 4478 165 70 24 chr6 43869162 43870250 -145409304 + L1MB5 LINE L1 4962 6117 -57 2347 88 0 0 chr6 43870250 43870545 -145409009 - AluY SINE Alu -16 295 1 4478 165 70 24 chr6 43870545 43870606 -145408948 + L1MB5 LINE L1 6117 6174 0 2155 102 7 3 chr6 43870633 43870942 -145408612 - AluSq SINE Alu 0 310 1 2369 80 0 0 chr6 43870976 43871275 -145408279 + AluY SINE Alu 1 299 -12 2325 71 0 0 chr6 43871356 43871663 -145407891 - AluSp SINE Alu 0 307 1 1758 157 0 42 chr6 43872347 43872659 -145406895 - AluJo SINE Alu -9 303 5 1585 135 9 135 chr6 43873443 43873568 -145405986 + AluJb SINE Alu 3 142 -160 246 32 0 0 chr6 43873568 43873599 -145405955 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1585 135 9 135 chr6 43873599 43873611 -145405943 + AluJb SINE Alu 142 154 -148 1490 163 82 35 chr6 43873611 43873893 -145405661 + AluSq SINE Alu 1 295 -18 1585 135 9 135 chr6 43873893 43874088 -145405466 + AluJb SINE Alu 154 294 -8 2510 65 3 0 chr6 43874090 43874398 -145405156 + AluY SINE Alu 1 309 -2 998 145 0 0 chr6 43874454 43874599 -145404955 - AluJ SINE Alu -12 300 156 37 0 0 0 chr6 43874603 43874640 -145404914 + AT_rich Low_complexity Low_complexity 1 37 0 680 153 0 42 chr6 43874640 43874758 -145404796 - AluJ SINE Alu -162 150 38 226 341 140 21 chr6 43874821 43875149 -145404405 - L2 LINE L2 -685 2629 2263 2548 59 3 0 chr6 43875403 43875710 -145403844 + AluY SINE Alu 1 308 -3 29 47 0 0 chr6 43876261 43876304 -145403250 + AT_rich Low_complexity Low_complexity 1 43 0 323 152 0 0 chr6 43876574 43876620 -145402934 + AluJo SINE Alu 2 47 -261 917 103 0 89 chr6 43876662 43876808 -145402746 + FLAM_C SINE Alu 1 133 0 1140 179 153 0 chr6 43876819 43877048 -145402506 + AluJo SINE Alu 33 296 -16 2387 94 3 0 chr6 43877054 43877361 -145402193 + AluSq SINE Alu 1 308 -5 622 139 209 0 chr6 43877535 43877650 -145401904 + FLAM_C SINE Alu 5 143 0 1688 175 0 17 chr6 43877771 43878062 -145401492 - AluJb SINE Alu -24 288 3 322 349 92 7 chr6 43878375 43878527 -145401027 + MIR3 SINE MIR 38 202 -6 388 263 81 12 chr6 43878721 43878881 -145400673 - L1MC4a LINE L1 -1841 5967 5797 404 219 50 25 chr6 43878895 43879014 -145400540 - L1MC5 LINE L1 -33 7928 7807 1666 113 13 9 chr6 43879066 43879295 -145400259 - AluSx SINE Alu -82 230 1 1814 138 20 40 chr6 43879299 43879509 -145400045 - AluJb SINE Alu -14 298 94 2160 76 36 50 chr6 43879509 43879812 -145399742 - AluSq SINE Alu -14 299 1 1814 138 20 40 chr6 43879812 43879905 -145399649 - AluJb SINE Alu -218 94 1 476 160 27 0 chr6 43879905 43879980 -145399574 + FAM SINE Alu 72 148 -37 357 24 0 0 chr6 43879989 43880031 -145399523 + (CA)n Simple_repeat Simple_repeat 2 43 0 2169 110 0 0 chr6 43880035 43880317 -145399237 + AluSx SINE Alu 1 282 -30 2950 212 57 76 chr6 43880336 43881399 -145398155 - L1M4 LINE L1 -1704 4442 3400 1179 144 77 0 chr6 43881401 43881582 -145397972 + MER21B LTR ERV1 301 495 -368 473 181 63 0 chr6 43881742 43881869 -145397685 + L1MA4 LINE L1 6165 6299 -1 311 336 0 66 chr6 43881869 43881991 -145397563 - L1M4 LINE L1 -2744 3402 3289 1013 186 34 114 chr6 43881991 43882341 -145397213 + L1MC5 LINE L1 6750 7071 -890 735 238 14 59 chr6 43882336 43882374 -145397180 + L1MC5 LINE L1 7652 7690 -271 * 2400 57 7 0 chr6 43882374 43882671 -145396883 - AluY SINE Alu -12 299 1 735 238 14 59 chr6 43882671 43882918 -145396636 + L1MC5 LINE L1 7690 7924 -37 333 271 133 14 chr6 43882919 43882930 -145396624 - L1M4 LINE L1 -1442 4704 4696 1493 163 20 49 chr6 43882930 43883236 -145396318 + AluJb SINE Alu 1 297 -15 333 271 133 14 chr6 43883236 43883434 -145396120 - L1M4 LINE L1 -1450 4696 4470 376 339 50 38 chr6 43883446 43883685 -145395869 - L1M4 LINE L1 -1046 5100 4859 306 0 0 0 chr6 43883853 43883887 -145395667 + (CA)n Simple_repeat Simple_repeat 2 35 0 2156 94 7 3 chr6 43884686 43884994 -145394560 + AluY SINE Alu 1 309 -2 2698 172 73 21 chr6 43884994 43885553 -145394001 - L1MB5 LINE L1 -144 6030 5443 1453 147 3 46 chr6 43885580 43885886 -145393668 + AluJb SINE Alu 40 333 0 1969 97 40 30 chr6 43885887 43886185 -145393369 + AluSx SINE Alu 2 302 -10 5682 139 58 33 chr6 43886353 43886535 -145393019 + L1MC1 LINE L1 5184 5360 -973 1614 181 10 7 chr6 43886535 43886823 -145392731 + AluJo SINE Alu 1 289 -23 5682 139 58 33 chr6 43886823 43887761 -145391793 + L1MC1 LINE L1 5360 6328 -5 391 148 0 16 chr6 43887823 43887884 -145391670 - AluJo SINE Alu -21 281 222 1119 134 17 0 chr6 43887886 43888058 -145391496 - AluJo SINE Alu -125 187 13 24 0 0 0 chr6 43888074 43888098 -145391456 + AT_rich Low_complexity Low_complexity 1 24 0 1354 109 47 0 chr6 43888157 43888350 -145391204 - AluSq SINE Alu -111 202 1 265 235 17 84 chr6 43888350 43888469 -145391085 - MIR SINE MIR -48 214 104 1562 86 9 0 chr6 43889358 43889568 -145389986 - AluSg/x SINE Alu -1 311 100 189 0 0 0 chr6 43890106 43890127 -145389427 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2049 85 43 0 chr6 43890346 43890649 -145388905 + AluY SINE Alu 1 311 0 2050 103 7 0 chr6 43890742 43891052 -145388502 + AluSx SINE Alu 1 312 0 1057 133 23 0 chr6 43891056 43891229 -145388325 + L1MB3 LINE L1 5795 5971 -212 651 221 0 0 chr6 43891229 43891351 -145388203 + FLAM_A SINE Alu 4 125 -8 2012 105 7 0 chr6 43891355 43891641 -145387913 + AluSx SINE Alu 1 288 -24 34 0 0 0 chr6 43891641 43891675 -145387879 + AT_rich Low_complexity Low_complexity 1 34 0 1609 177 0 30 chr6 43891692 43891997 -145387557 + AluJo SINE Alu 14 309 -3 518 174 9 0 chr6 43892004 43892113 -145387441 + GA-rich Low_complexity Low_complexity 1 110 0 908 146 19 13 chr6 43892158 43892316 -145387238 - FRAM SINE Alu -18 158 1 1020 149 0 11 chr6 43892316 43892497 -145387057 + L1MB3 LINE L1 6005 6183 0 1837 129 39 0 chr6 43892499 43892778 -145386776 - AluSx SINE Alu -22 290 1 2136 111 0 3 chr6 43892794 43893101 -145386453 + AluSx SINE Alu 1 306 -6 2234 89 0 0 chr6 43893515 43893807 -145385747 + AluSg SINE Alu 1 292 -18 2275 88 0 0 chr6 43894227 43894532 -145385022 - AluY SINE Alu -6 305 1 354 338 65 0 chr6 43895036 43895190 -145384364 - L2 LINE L2 -38 3275 3112 350 305 120 15 chr6 43895816 43896016 -145383538 - MLT1J LTR MaLR -38 473 253 2244 85 0 23 chr6 43896416 43896723 -145382831 + AluSx SINE Alu 1 300 -12 2080 105 10 0 chr6 43896783 43897077 -145382477 + AluSc SINE Alu 1 297 -12 6136 52 3 0 chr6 43897345 43898088 -145381466 - L1PA5 LINE L1 -5 6149 5405 1960 135 3 0 chr6 43898118 43898406 -145381148 + AluSp SINE Alu 2 290 -23 2299 81 0 0 chr6 43898593 43898888 -145380666 + AluY SINE Alu 2 296 -15 2301 90 0 10 chr6 43899466 43899777 -145379777 + AluSx SINE Alu 1 308 -4 211 305 42 11 chr6 43899882 43899977 -145379577 + MIR3 SINE MIR 110 207 -1 344 233 81 0 chr6 43900381 43900467 -145379087 - MIR SINE MIR -50 212 120 2137 97 13 10 chr6 43900659 43900969 -145378585 + AluSx SINE Alu 1 311 -1 494 113 0 0 chr6 43901839 43901910 -145377644 - AluJ/FRAM SINE Alu -10 302 232 1494 128 45 0 chr6 43901922 43902165 -145377389 - AluJo SINE Alu -52 260 7 186 250 19 19 chr6 43902900 43902952 -145376602 + L2 LINE L2 3252 3303 -10 2039 125 3 0 chr6 43903146 43903443 -145376111 + AluSx SINE Alu 1 298 -14 1366 205 30 17 chr6 43903619 43903916 -145375638 + AluJo SINE Alu 1 301 -11 366 250 66 52 chr6 43904047 43904183 -145375371 - LTR67 LTR ERVL 0 557 420 2093 111 0 0 chr6 43904876 43905165 -145374389 + AluSx SINE Alu 5 293 -19 791 150 0 0 chr6 43905180 43905300 -145374254 - FLAM_C SINE Alu -18 125 6 1807 138 39 0 chr6 43905327 43905610 -145373944 + AluSx SINE Alu 1 294 -18 1642 94 126 12 chr6 43905665 43905946 -145373608 - AluSg SINE Alu 0 310 1 938 194 0 0 chr6 43905949 43906114 -145373440 - FRAM SINE Alu -14 162 1 1597 192 3 3 chr6 43906619 43906911 -145372643 - AluJb SINE Alu -20 292 1 2264 94 0 0 chr6 43907387 43907694 -145371860 + AluSg SINE Alu 1 307 -3 1678 163 3 23 chr6 43907709 43908015 -145371539 + AluJb SINE Alu 1 300 -12 1596 129 13 93 chr6 43908129 43908440 -145371114 + AluJo SINE Alu 12 297 -15 2235 100 0 3 chr6 43908440 43908751 -145370803 + AluSg SINE Alu 1 310 0 632 203 0 30 chr6 43908985 43909118 -145370436 - AluJb SINE Alu -19 293 165 1712 176 10 0 chr6 43910344 43910640 -145368914 + AluJb SINE Alu 1 299 -13 24 77 0 0 chr6 43910680 43910732 -145368822 + AT_rich Low_complexity Low_complexity 1 52 0 1089 190 23 5 chr6 43910769 43910985 -145368569 + AluJo SINE Alu 1 220 -92 1856 142 3 3 chr6 43911277 43911572 -145367982 - AluSx SINE Alu -11 301 7 273 280 203 25 chr6 43911989 43912107 -145367447 + L2 LINE L2 3124 3262 -10 2798 118 102 82 chr6 43912235 43912427 -145367127 + Tigger3b DNA MER2_type 2 189 -2839 1697 163 20 3 chr6 43912427 43912722 -145366832 + AluJb SINE Alu 1 300 -12 2798 118 102 82 chr6 43912722 43913147 -145366407 + Tigger3b DNA MER2_type 189 631 -600 822 168 0 28 chr6 43913148 43913291 -145366263 + FLAM_A SINE Alu 1 139 -3 3532 110 85 2 chr6 43913307 43913882 -145365672 + Tigger3b DNA MER2_type 609 1231 0 334 244 0 35 chr6 43914178 43914264 -145365290 - L3 LINE CR1 -5 1572 1490 974 173 154 30 chr6 43914580 43914692 -145364862 + AluSg1 SINE Alu 1 98 -211 1659 127 68 93 chr6 43914692 43915077 -145364477 + THE1C LTR MaLR 1 375 0 974 173 154 30 chr6 43915077 43915107 -145364447 + AluSg1 SINE Alu 98 123 -186 1241 146 54 130 chr6 43915107 43915253 -145364301 + AluSx SINE Alu 3 159 -143 207 0 0 0 chr6 43915253 43915276 -145364278 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2201 95 0 3 chr6 43915276 43915582 -145363972 + AluY SINE Alu 1 305 -6 1241 146 54 130 chr6 43915582 43915786 -145363768 + AluSx SINE Alu 157 302 0 974 173 154 30 chr6 43915786 43915908 -145363646 + AluSg1 SINE Alu 123 299 -10 679 143 109 0 chr6 43916133 43916252 -145363302 - FLAM_C SINE Alu -1 132 1 252 221 0 0 chr6 43918143 43918220 -145361334 + (CCG)n Simple_repeat Simple_repeat 1 77 0 509 138 87 65 chr6 43919164 43919302 -145360252 - FLAM_C SINE Alu -2 141 1 1656 148 0 70 chr6 43919652 43919983 -145359571 - AluJb SINE Alu -4 308 1 2279 94 0 0 chr6 43920149 43920456 -145359098 + AluSx SINE Alu 1 307 -5 1246 210 113 25 chr6 43920465 43920716 -145358838 + L1M4 LINE L1 2705 2932 -3214 840 148 0 15 chr6 43920716 43920851 -145358703 + AluJ SINE Alu 1 133 -169 1246 210 113 25 chr6 43920851 43920950 -145358604 + L1M4 LINE L1 2932 3021 -3125 1766 171 13 0 chr6 43920950 43921249 -145358305 + AluJb SINE Alu 1 303 -9 1246 210 113 25 chr6 43921249 43921373 -145358181 + L1M4 LINE L1 3021 3222 -2924 946 172 18 0 chr6 43921376 43921566 -145357988 + AluJ SINE Alu 120 312 0 774 128 34 0 chr6 43921569 43921686 -145357868 + L1MC3 LINE L1 7647 7767 -18 * 1560 286 81 14 chr6 43921660 43921910 -145357644 + L1M4 LINE L1 3458 3690 -2456 225 0 0 0 chr6 43921910 43921935 -145357619 + (CA)n Simple_repeat Simple_repeat 2 26 0 1560 286 81 14 chr6 43921935 43922353 -145357201 + L1M4 LINE L1 3690 4171 -1975 408 315 9 0 chr6 43922354 43922465 -145357089 - MLT1K LTR MaLR -408 180 69 21 36 0 0 chr6 43922539 43922567 -145356987 + GC_rich Low_complexity Low_complexity 1 28 0 2634 79 25 82 chr6 43922618 43923384 -145356170 + SVA Other Other 393 868 -520 1670 104 13 74 chr6 43923401 43923863 -145355691 + SVA Other Other 433 866 -520 27 49 0 0 chr6 43923868 43923909 -145355645 + GC_rich Low_complexity Low_complexity 1 41 0 6225 69 14 48 chr6 43923931 43924918 -145354636 + SVA Other Other 433 1386 0 352 226 27 103 chr6 43924919 43924983 -145354571 + L1M4 LINE L1 4151 4199 -1947 1822 147 7 0 chr6 43924983 43925297 -145354257 - AluSx SINE Alu 0 312 1 352 226 27 103 chr6 43925297 43925378 -145354176 + L1M4 LINE L1 4199 4285 -1861 2198 88 3 0 chr6 43925378 43925663 -145353891 + AluSg SINE Alu 1 286 -24 1023 140 10 17 chr6 43925681 43926009 -145353545 + MER21A LTR ERV1 83 432 -431 696 131 0 0 chr6 43926009 43926108 -145353446 - LTR12 LTR ERV1 -1 713 615 267 208 31 83 chr6 43926111 43926207 -145353347 - LTR30 LTR ERV1 -80 642 552 23 0 0 0 chr6 43926213 43926236 -145353318 + GC_rich Low_complexity Low_complexity 1 23 0 1449 105 39 53 chr6 43926271 43926544 -145353010 - LTR12 LTR ERV1 -425 2013 57 246 269 0 0 chr6 43926544 43926596 -145352958 - LTR30 LTR ERV1 -670 52 1 800 216 82 35 chr6 43926639 43926870 -145352684 - MER4D LTR ERV1 -11 892 651 2599 144 9 118 chr6 43926870 43927411 -145352143 - LTR12 LTR ERV1 -232 482 1 2960 150 47 72 chr6 43927412 43927535 -145352019 - MER4D LTR ERV1 -253 650 525 2049 121 0 0 chr6 43927535 43927833 -145351721 - AluSx SINE Alu -14 298 1 2960 150 47 72 chr6 43927833 43928376 -145351178 - MER4D LTR ERV1 -378 525 1 913 126 28 28 chr6 43928377 43928520 -145351034 + MER21A LTR ERV1 559 701 -230 1538 188 72 60 chr6 43928520 43928966 -145350588 + pTR5 LTR ERV1 743 1193 -1245 2519 161 108 91 chr6 43928969 43929554 -145350000 + LTR12 LTR ERV1 118 712 -2 742 165 52 113 chr6 43929554 43929802 -145349752 + MER21A LTR ERV1 696 928 -3 2239 210 52 34 chr6 43929805 43930081 -145349473 + L1ME1 LINE L1 5556 5825 -341 2190 110 0 0 chr6 43930081 43930390 -145349164 + AluSx SINE Alu 1 309 -3 2239 210 52 34 chr6 43930390 43930708 -145348846 + L1ME1 LINE L1 5825 6161 -5 247 271 101 47 chr6 43930826 43930955 -145348599 + L1ME3A LINE L1 5975 6110 -60 1883 137 10 7 chr6 43930958 43931257 -145348297 + AluSx SINE Alu 5 304 -8 2139 104 3 10 chr6 43931280 43931565 -145347989 + AluSp SINE Alu 1 305 -8 22 0 0 0 chr6 43931565 43931587 -145347967 + AT_rich Low_complexity Low_complexity 1 22 0 1990 120 3 7 chr6 43931669 43931952 -145347602 + AluSx SINE Alu 1 282 -30 308 24 24 0 chr6 43931956 43931997 -145347557 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1926 93 19 30 chr6 43932000 43932269 -145347285 + AluSq SINE Alu 1 266 -47 216 0 0 0 chr6 43932690 43932714 -145346840 + (TG)n Simple_repeat Simple_repeat 2 25 0 1814 158 9 53 chr6 43933289 43933611 -145345943 + AluJb SINE Alu 1 308 -4 1989 142 0 22 chr6 43933611 43933922 -145345632 + AluSq SINE Alu 1 304 -9 310 288 181 10 chr6 43933922 43934184 -145345370 + L2 LINE L2 2691 3036 -236 3816 105 0 4 chr6 43934435 43934948 -145344606 + MER9 LTR ERVK 1 511 0 218 324 81 9 chr6 43934999 43935110 -145344444 - L2 LINE L2 -15 3257 3139 256 313 145 33 chr6 43935145 43935359 -145344195 + L2 LINE L2 2123 2360 -954 1504 147 108 39 chr6 43935516 43935795 -145343759 + AluSx SINE Alu 3 300 -12 348 298 57 0 chr6 43935795 43935919 -145343635 - L2 LINE L2 -530 2784 2654 2172 138 0 0 chr6 43936022 43936320 -145343234 + AluSx SINE Alu 1 298 -14 1933 130 9 16 chr6 43936322 43936670 -145342884 + MER4A LTR ERV1 261 664 0 302 264 104 7 chr6 43936671 43936815 -145342739 - L1MEd LINE L1 -4906 1213 1056 1027 159 0 6 chr6 43936815 43936985 -145342569 + AluJb SINE Alu 134 302 -10 766 151 67 67 chr6 43937132 43937152 -145342402 - AluJb SINE Alu 0 312 293 713 128 0 101 chr6 43937152 43937300 -145342254 - FLAM_A SINE Alu 0 133 1 2416 81 0 0 chr6 43937309 43937605 -145341949 - AluY SINE Alu -15 296 1 2494 53 0 10 chr6 43937605 43937906 -145341648 - AluY SINE Alu -13 298 1 766 151 67 67 chr6 43937906 43938053 -145341501 - AluJb SINE Alu -25 287 134 2372 107 0 3 chr6 43938053 43938361 -145341193 - AluSx SINE Alu -5 307 1 2359 96 0 19 chr6 43938364 43938677 -145340877 - AluSq SINE Alu -6 307 1 2187 103 3 13 chr6 43938681 43938983 -145340571 - AluSx SINE Alu -13 299 1 1440 158 43 50 chr6 43938985 43939263 -145340291 - AluJb SINE Alu -7 305 30 2310 68 17 10 chr6 43939267 43939561 -145339993 - AluSg SINE Alu -14 296 1 22 0 0 0 chr6 43939565 43939587 -145339967 + AT_rich Low_complexity Low_complexity 1 22 0 227 209 97 82 chr6 43939614 43939748 -145339806 + L1ME4a LINE L1 5975 6110 -11 337 113 0 0 chr6 43941918 43941980 -145337574 - Alu SINE Alu 0 301 240 1976 124 21 0 chr6 43942196 43942478 -145337076 - AluSx SINE Alu -24 288 1 235 288 82 0 chr6 43942509 43942582 -145336972 - MER5B DNA MER1_type -19 159 81 345 183 32 21 chr6 43942651 43942903 -145336651 + AluJo SINE Alu 3 295 -7 1853 140 8 0 chr6 43943016 43943281 -145336273 - AluSx SINE Alu -45 267 1 27 0 0 0 chr6 43943400 43943427 -145336127 + AT_rich Low_complexity Low_complexity 1 27 0 2110 135 0 7 chr6 43943434 43943737 -145335817 + AluSg SINE Alu 1 301 -9 2708 134 41 8 chr6 43943737 43944223 -145335331 - L1MB3 LINE L1 -41 6378 5877 1204 97 6 11 chr6 43944224 43944400 -145335154 + THE1A LTR MaLR 2 176 -179 4581 87 6 15 chr6 43944400 43944976 -145334578 + THE1A-int LTR MaLR 932 1503 -77 2382 80 0 25 chr6 43944976 43945290 -145334264 + AluY SINE Alu 1 306 -5 4581 87 6 15 chr6 43945290 43945368 -145334186 + THE1A-int LTR MaLR 1503 1580 0 2789 74 6 0 chr6 43945368 43945721 -145333833 + THE1A LTR MaLR 1 355 0 1389 122 0 138 chr6 43945721 43945763 -145333791 - L1MB3 LINE L1 -538 5881 5835 896 168 0 0 chr6 43945763 43945894 -145333660 - FLAM_A SINE Alu -2 131 1 1389 122 0 138 chr6 43945894 43946106 -145333448 - L1MB3 LINE L1 -584 5835 5689 847 159 0 36 chr6 43946106 43946244 -145333310 - FLAM_C SINE Alu 0 133 1 1389 122 0 138 chr6 43946244 43946350 -145333204 - L1MB3 LINE L1 -730 5689 5570 256 118 191 0 chr6 43946326 43946394 -145333160 - L1MB3 LINE L1 -3890 2494 2414 * 2235 128 0 0 chr6 43946423 43946719 -145332835 + AluSx SINE Alu 1 296 -16 297 0 0 0 chr6 43946719 43946732 -145332822 + (CA)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr6 43946732 43946765 -145332789 + (CA)n Simple_repeat Simple_repeat 2 34 0 419 49 110 12 chr6 43946856 43947020 -145332534 + (TA)n Simple_repeat Simple_repeat 1 180 0 1560 61 0 0 chr6 43947020 43947221 -145332333 + AluY SINE Alu 102 302 0 378 200 12 0 chr6 43947224 43947309 -145332245 - L1MEc LINE L1 -4049 2558 2473 1517 202 3 23 chr6 43947320 43947622 -145331932 - AluJo SINE Alu -16 296 1 2320 104 0 0 chr6 43947627 43947936 -145331618 - AluSg SINE Alu -1 309 1 2261 89 7 7 chr6 43947940 43948242 -145331312 - AluY SINE Alu -9 302 1 736 216 69 63 chr6 43948243 43948299 -145331255 - L1MEc LINE L1 -4128 2479 2425 2342 88 0 0 chr6 43948299 43948594 -145330960 - AluY SINE Alu -16 295 1 216 0 0 0 chr6 43948598 43948622 -145330932 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2213 99 7 0 chr6 43948626 43948918 -145330636 - AluSx SINE Alu -18 294 1 736 216 69 63 chr6 43948918 43949198 -145330356 - L1MEc LINE L1 -4186 2421 2131 2292 108 3 0 chr6 43949226 43949531 -145330023 - AluSq SINE Alu -7 306 1 398 109 0 0 chr6 43949531 43949586 -145329968 - L1M4 LINE L1 -3395 2751 2697 2080 123 31 3 chr6 43949640 43949932 -145329622 - AluSx SINE Alu -12 300 1 782 172 0 15 chr6 43949974 43950101 -145329453 + FLAM_A SINE Alu 1 127 -175 2420 94 10 0 chr6 43950101 43950410 -145329144 + AluSq SINE Alu 1 312 -1 572 263 61 41 chr6 43950474 43950587 -145328967 - L1M1 LINE L1 -1926 4500 4391 6319 67 19 4 chr6 43950587 43950943 -145328611 - L1PB1 LINE L1 -1 6150 5801 486 0 0 0 chr6 43950943 43950997 -145328557 + (TA)n Simple_repeat Simple_repeat 1 54 0 6319 67 19 4 chr6 43950997 43951127 -145328427 - L1PB1 LINE L1 -350 5801 5674 2136 105 0 53 chr6 43951127 43951450 -145328104 - AluSx SINE Alu -6 306 1 6319 67 19 4 chr6 43951450 43951653 -145327901 - L1PB1 LINE L1 -477 5674 5475 2353 108 0 13 chr6 43951653 43951967 -145327587 - AluY SINE Alu -1 310 1 6319 67 19 4 chr6 43951967 43952597 -145326957 - L1PB1 LINE L1 -676 5475 4854 572 263 61 41 chr6 43952597 43952815 -145326739 - L1M1 LINE L1 -2035 4391 1758 1079 106 0 0 chr6 43952854 43952995 -145326559 - AluJb SINE Alu -171 141 1 3920 115 19 3 chr6 43953096 43953680 -145325874 - HUERS-P3 LTR ERV1 -2920 5999 5407 958 94 0 58 chr6 43953781 43953919 -145325635 + AluSq/x SINE Alu 9 138 -175 2085 139 0 0 chr6 43953919 43954222 -145325332 + AluSx SINE Alu 3 305 -7 1729 135 0 39 chr6 43955038 43955298 -145324256 + AluSq SINE Alu 1 250 -63 2393 75 7 13 chr6 43955533 43955841 -145323713 - AluY SINE Alu -1 310 5 2070 115 24 24 chr6 43956052 43956348 -145323206 + AluSx SINE Alu 1 296 -16 331 211 58 29 chr6 43956407 43956511 -145323043 - Charlie5 DNA MER1_type -49 2563 2457 872 200 7 7 chr6 43956515 43956665 -145322889 + FRAM SINE Alu 1 142 -34 2228 112 3 6 chr6 43956692 43957005 -145322549 + AluSx SINE Alu 1 312 0 348 148 164 23 chr6 43957013 43957107 -145322447 - Charlie5 DNA MER1_type -116 2469 2351 1646 163 83 0 chr6 43957107 43957244 -145322310 + AluJb SINE Alu 1 125 -187 2390 87 0 22 chr6 43957244 43957556 -145321998 + AluSp SINE Alu 1 305 -8 1646 163 83 0 chr6 43957556 43957694 -145321860 + AluJb SINE Alu 125 299 -13 348 148 164 23 chr6 43957694 43957727 -145321827 - Charlie5 DNA MER1_type -234 2351 2324 400 288 141 12 chr6 43958483 43958646 -145320908 + MIR SINE MIR 28 211 -51 201 247 169 0 chr6 43958806 43958883 -145320671 - MIR SINE MIR -61 147 58 561 129 35 0 chr6 43959627 43959712 -145319842 + FLAM_A SINE Alu 34 121 -21 2236 118 16 0 chr6 43959741 43960047 -145319507 - AluSx SINE Alu -1 311 1 1655 163 0 45 chr6 43960587 43960876 -145318678 + AluJb SINE Alu 1 276 -36 753 152 64 0 chr6 43960900 43961025 -145318529 + FLAM_A SINE Alu 1 133 0 1563 124 153 18 chr6 43962521 43962795 -145316759 + AluYb8 SINE Alu 1 311 -7 2183 104 0 10 chr6 43962805 43963130 -145316424 + AluSg SINE Alu 1 322 0 2314 198 37 0 chr6 43963283 43963769 -145315785 - L1ME1 LINE L1 -218 5948 5445 1455 143 58 0 chr6 43963839 43964097 -145315457 + L1MA6 LINE L1 6006 6278 -22 2355 93 3 3 chr6 43964942 43965243 -145314311 + AluSp SINE Alu 1 301 -12 483 200 154 0 chr6 43965301 43965411 -145314143 - FLAM_A SINE Alu -8 134 8 1354 171 123 45 chr6 43965477 43965513 -145314041 - L1ME1 LINE L1 -5 6161 6129 1874 162 7 17 chr6 43965513 43965809 -145313745 - AluJb SINE Alu -19 293 1 1354 171 123 45 chr6 43965809 43966133 -145313421 - L1ME1 LINE L1 -37 6129 5832 1995 109 52 0 chr6 43966133 43966429 -145313125 - AluSx SINE Alu 0 310 1 1354 171 123 45 chr6 43966429 43966442 -145313112 - L1ME1 LINE L1 -334 5832 5821 2135 117 20 0 chr6 43966442 43966740 -145312814 - AluSx SINE Alu -8 304 1 1354 171 123 45 chr6 43966740 43966756 -145312798 - L1ME1 LINE L1 -345 5821 5754 872 226 16 5 chr6 43966847 43967037 -145312517 + MER90 LTR ERV1 1 192 -422 519 125 0 0 chr6 43967045 43967117 -145312437 + AluS SINE Alu 2 73 -240 828 230 55 0 chr6 43967117 43967317 -145312237 + MER90 LTR ERV1 402 612 -2 2253 119 7 0 chr6 43967353 43967655 -145311899 - AluSx SINE Alu -8 304 1 2352 118 0 6 chr6 43967762 43968076 -145311478 + AluSx SINE Alu 1 312 0 254 206 48 0 chr6 43968103 43968166 -145311388 - L1ME1 LINE L1 -450 5714 5649 400 103 0 0 chr6 43968166 43968224 -145311330 - MLT1D LTR MaLR 0 505 448 2031 137 10 7 chr6 43968225 43968518 -145311036 - AluJb SINE Alu -18 294 1 1052 136 0 0 chr6 43968569 43968716 -145310838 - FRAM SINE Alu -23 153 7 2543 67 0 0 chr6 43968725 43969025 -145310529 - AluSq SINE Alu -13 300 1 1831 201 24 86 chr6 43969027 43969135 -145310419 - L1ME1 LINE L1 -846 5300 5187 2190 141 0 0 chr6 43969135 43969440 -145310114 - AluSx SINE Alu -7 305 1 1831 201 24 86 chr6 43969440 43969510 -145310044 - L1ME1 LINE L1 -959 5187 5114 2089 129 24 0 chr6 43969510 43969804 -145309750 - AluJb SINE Alu -11 301 1 1831 201 24 86 chr6 43969804 43969819 -145309735 - L1ME1 LINE L1 -1032 5114 5100 2267 88 10 14 chr6 43969819 43970115 -145309439 - AluSq SINE Alu -18 295 1 1831 201 24 86 chr6 43970115 43970224 -145309330 - L1ME1 LINE L1 -1046 5100 4986 3626 147 29 8 chr6 43970224 43970583 -145308971 - LTR26 LTR ERV1 0 603 226 2227 109 3 22 chr6 43970583 43970895 -145308659 - AluSx SINE Alu -6 306 1 3626 147 29 8 chr6 43970895 43971126 -145308428 - LTR26 LTR ERV1 -377 226 1 1831 201 24 86 chr6 43971126 43971421 -145308133 - L1ME1 LINE L1 -1160 4986 4742 2047 143 0 10 chr6 43971421 43971722 -145307832 - AluJo SINE Alu -14 298 1 1831 201 24 86 chr6 43971722 43971786 -145307768 - L1ME1 LINE L1 -1404 4742 4676 459 35 0 0 chr6 43971792 43971849 -145307705 + (TG)n Simple_repeat Simple_repeat 2 58 0 1759 122 42 35 chr6 43971849 43972128 -145307426 - AluJo SINE Alu -24 288 5 39 0 0 0 chr6 43972137 43972176 -145307378 + AT_rich Low_complexity Low_complexity 1 39 0 933 191 77 26 chr6 43972179 43972319 -145307235 - AluJo SINE Alu -24 288 157 2186 107 0 30 chr6 43972319 43972619 -145306935 - AluSx SINE Alu -21 291 1 1237 180 136 37 chr6 43972623 43972756 -145306798 - AluJo SINE Alu -13 299 181 1989 141 14 0 chr6 43972756 43973053 -145306501 - AluJb SINE Alu -11 301 1 1237 180 136 37 chr6 43973053 43973191 -145306363 - AluJo SINE Alu -131 181 1 933 191 77 26 chr6 43973191 43973239 -145306315 - AluJo SINE Alu -157 155 85 822 225 0 24 chr6 43973266 43973435 -145306119 - AluJb SINE Alu -51 261 97 1113 226 47 12 chr6 43973446 43973785 -145305769 - L1M4 LINE L1 -1045 5101 4755 1094 118 13 0 chr6 43973786 43973938 -145305616 - AluSg/x SINE Alu -17 293 140 939 268 12 29 chr6 43973940 43974099 -145305455 - L1M4 LINE L1 -1384 4762 4602 2165 119 10 0 chr6 43974099 43974393 -145305161 - AluSq SINE Alu -16 297 1 939 268 12 29 chr6 43974393 43974576 -145304978 - L1M4 LINE L1 -1544 4602 4426 2140 73 3 28 chr6 43974576 43974863 -145304691 - AluY SINE Alu -2 309 30 1931 108 12 4 chr6 43974873 43975131 -145304423 - AluSq SINE Alu -20 293 34 2017 90 112 0 chr6 43975132 43975410 -145304144 - AluSq SINE Alu -4 309 1 204 216 0 0 chr6 43975535 43975586 -145303968 + A-rich Low_complexity Low_complexity 1 51 0 1027 159 0 6 chr6 43975720 43975890 -145303664 - AluJb SINE Alu -10 302 134 302 264 104 7 chr6 43975890 43976034 -145303520 + L1MEd LINE L1 1056 1213 -4906 1933 130 9 16 chr6 43976035 43976383 -145303171 - MER4A LTR ERV1 0 664 261 2172 138 0 0 chr6 43976385 43976683 -145302871 - AluSx SINE Alu -14 298 1 348 298 57 0 chr6 43976786 43976910 -145302644 + L2 LINE L2 2654 2784 -530 1504 147 108 39 chr6 43976910 43977189 -145302365 - AluSx SINE Alu -12 300 3 256 313 145 33 chr6 43977346 43977560 -145301994 - L2 LINE L2 -954 2360 2123 218 324 81 9 chr6 43977595 43977706 -145301848 + L2 LINE L2 3139 3257 -15 3816 105 0 4 chr6 43977757 43978270 -145301284 - MER9 LTR ERVK 0 511 1 310 288 181 10 chr6 43978521 43978783 -145300771 - L2 LINE L2 -236 3036 2691 1989 142 0 22 chr6 43978783 43979094 -145300460 - AluSq SINE Alu -9 304 1 1814 158 9 53 chr6 43979094 43979416 -145300138 - AluJb SINE Alu -4 308 1 216 0 0 0 chr6 43979991 43980015 -145299539 + (CA)n Simple_repeat Simple_repeat 2 25 0 1926 93 19 30 chr6 43980436 43980705 -145298849 - AluSq SINE Alu -47 266 1 308 24 24 0 chr6 43980708 43980749 -145298805 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1990 120 3 7 chr6 43980753 43981036 -145298518 - AluSx SINE Alu -30 282 1 2291 104 3 10 chr6 43981118 43981425 -145298129 - AluSp SINE Alu -8 305 1 2032 137 10 7 chr6 43981448 43981747 -145297807 - AluSx SINE Alu -8 304 5 350 271 101 47 chr6 43981750 43981879 -145297675 - L1ME3A LINE L1 -60 6110 5975 2096 210 52 34 chr6 43981997 43982315 -145297239 - L1ME1 LINE L1 -5 6161 5825 2353 110 0 0 chr6 43982315 43982624 -145296930 - AluSx SINE Alu -3 309 1 2096 210 52 34 chr6 43982624 43982900 -145296654 - L1ME1 LINE L1 -341 5825 5556 693 169 52 113 chr6 43982903 43983151 -145296403 - MER21A LTR ERV1 -3 928 696 2393 161 108 91 chr6 43983151 43983736 -145295818 - LTR12 LTR ERV1 -2 712 118 1509 188 72 60 chr6 43983739 43984185 -145295369 - pTR5 LTR ERV1 -1245 1193 743 867 126 28 28 chr6 43984185 43984328 -145295226 - MER21A LTR ERV1 -230 701 559 2800 157 47 72 chr6 43984329 43984872 -145294682 + MER4D LTR ERV1 1 525 -378 2203 121 0 0 chr6 43984872 43985170 -145294384 + AluSx SINE Alu 1 298 -14 2800 157 47 72 chr6 43985170 43985293 -145294261 + MER4D LTR ERV1 525 650 -253 2471 144 9 118 chr6 43985294 43985835 -145293719 + LTR12 LTR ERV1 1 482 -232 767 216 82 35 chr6 43985835 43986066 -145293488 + MER4D LTR ERV1 651 892 -11 242 269 0 0 chr6 43986109 43986161 -145293393 + LTR30 LTR ERV1 1 52 -670 1370 105 39 53 chr6 43986161 43986434 -145293120 + LTR12 LTR ERV1 57 2013 -425 23 0 0 0 chr6 43986469 43986492 -145293062 + GC_rich Low_complexity Low_complexity 1 23 0 260 208 31 83 chr6 43986498 43986594 -145292960 + LTR30 LTR ERV1 552 642 -80 668 131 0 0 chr6 43986597 43986696 -145292858 + LTR12 LTR ERV1 615 713 -1 1094 139 5 123 chr6 43986696 43987042 -145292512 - MER21A LTR ERV1 -431 432 126 2377 81 3 0 chr6 43987042 43987327 -145292227 - AluSg SINE Alu -24 286 1 1094 139 5 123 chr6 43987327 43987440 -145292114 - MER21A LTR ERV1 -737 126 1 286 139 0 0 chr6 43987440 43987483 -145292071 - L1ME LINE L1 -607 5559 5517 2122 101 7 0 chr6 43987483 43987799 -145291755 + AluSx SINE Alu 5 322 0 2252 75 0 34 chr6 43987799 43988142 -145291412 + AluY SINE Alu 1 333 0 474 132 0 0 chr6 43988165 43988241 -145291313 + (TC)n Simple_repeat Simple_repeat 1 76 0 1911 164 3 0 chr6 43988242 43988534 -145291020 - AluJb SINE Alu -19 293 1 714 185 51 10 chr6 43988542 43988737 -145290817 - L1ME LINE L1 -811 5335 5133 2262 100 0 0 chr6 43988756 43989035 -145290519 - AluSg SINE Alu -31 279 1 850 159 0 7 chr6 43989045 43989183 -145290371 - AluJo/FRAM SINE Alu -1 311 175 389 81 16 0 chr6 43989183 43989245 -145290309 + AluSp/q SINE Alu 241 303 0 866 192 14 112 chr6 43989246 43989427 -145290127 - L1ME LINE L1 -1211 4935 4791 2257 117 10 0 chr6 43989427 43989735 -145289819 - AluSp SINE Alu -2 311 1 866 192 14 112 chr6 43989735 43989840 -145289714 - L1ME LINE L1 -1355 4791 4677 734 223 91 65 chr6 43989879 43990046 -145289508 + L1MD3 LINE L1 7657 7818 -177 1702 179 7 23 chr6 43990046 43990347 -145289207 + AluJb SINE Alu 1 296 -16 1857 186 0 0 chr6 43990353 43990649 -145288905 + AluJb SINE Alu 1 296 -16 2160 125 0 0 chr6 43990653 43990954 -145288600 + AluSg SINE Alu 1 301 0 734 223 91 65 chr6 43990954 43991082 -145288472 + L1MD3 LINE L1 7824 7973 -22 1869 123 56 0 chr6 43991082 43991377 -145288177 + AluSx SINE Alu 1 310 0 652 132 0 26 chr6 43991417 43991531 -145288023 + AluJo/FLAM SINE Alu 18 128 -184 2715 3 0 0 chr6 43991533 43991853 -145287701 + AluY SINE Alu 1 320 0 1757 235 21 45 chr6 43991853 43992358 -145287196 - MLT1E LTR MaLR -60 533 42 1769 231 154 38 chr6 43992437 43992713 -145286841 - L1MC5 LINE L1 -523 7438 7195 2066 112 0 85 chr6 43992713 43993079 -145286475 - AluSx SINE Alu 0 312 1 1769 231 154 38 chr6 43993079 43993438 -145286116 - L1MC5 LINE L1 -766 7195 6704 700 211 72 0 chr6 43993438 43993590 -145285964 - FRAM SINE Alu -3 163 1 1769 231 154 38 chr6 43993590 43993686 -145285868 - L1MC5 LINE L1 -1257 6704 6621 1974 118 38 14 chr6 43993686 43993974 -145285580 + AluSx SINE Alu 1 295 -17 446 278 105 33 chr6 43994589 43994801 -145284753 - MLT1H LTR MaLR -273 276 51 2849 13 0 0 chr6 43995301 43995602 -145283952 - AluYa5 SINE Alu -10 301 1 373 236 57 57 chr6 43996239 43996396 -145283158 + MER5A DNA MER1_type 4 160 -29 698 167 0 8 chr6 43996493 43996619 -145282935 + FLAM_C SINE Alu 11 135 -8 2226 106 3 0 chr6 43996621 43996940 -145282614 + AluSp SINE Alu 1 320 0 2249 117 3 0 chr6 43996943 43997243 -145282311 + AluSq SINE Alu 1 301 -12 33 25 0 0 chr6 43997243 43997283 -145282271 + AT_rich Low_complexity Low_complexity 1 40 0 403 224 37 28 chr6 43997286 43997393 -145282161 + MIR SINE MIR 97 204 -58 346 242 24 65 chr6 43997965 43998089 -145281465 - MIR SINE MIR -110 152 34 563 285 44 0 chr6 43998130 43998267 -145281287 + MIR SINE MIR 46 188 -74 1897 191 77 29 chr6 43998278 43998760 -145280794 - MLT1D LTR MaLR 0 505 1 331 267 55 0 chr6 43998804 43998904 -145280650 + MIR SINE MIR 54 155 -61 2184 123 3 0 chr6 43999242 43999552 -145280002 - AluY SINE Alu 0 311 1 1770 170 3 22 chr6 43999577 43999888 -145279666 + AluJb SINE Alu 1 305 -7 1743 172 3 7 chr6 43999922 44000207 -145279347 + AluJb SINE Alu 10 293 -19 968 184 38 0 chr6 44000207 44000414 -145279140 - L1MB5 LINE L1 -50 6124 5902 1714 166 7 11 chr6 44000790 44001096 -145278458 - AluSx SINE Alu 0 305 1 841 229 52 52 chr6 44001133 44001404 -145278150 + L2 LINE L2 3041 3311 -2 2441 87 0 3 chr6 44001963 44002261 -145277293 + AluSc SINE Alu 1 297 -12 736 179 0 0 chr6 44002261 44002378 -145277176 - FLAM_A SINE Alu -15 118 2 569 217 182 34 chr6 44002409 44002794 -145276760 - MLT1H LTR MaLR -7 588 93 2345 110 0 0 chr6 44002794 44003095 -145276459 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 44003104 44003125 -145276429 + AT_rich Low_complexity Low_complexity 1 21 0 2086 119 0 23 chr6 44003136 44003439 -145276115 - AluSq SINE Alu -17 296 1 275 313 76 30 chr6 44003470 44003601 -145275953 - MIR3 SINE MIR -45 163 27 3006 128 120 77 chr6 44003850 44004143 -145275411 - MER39 LTR ERV1 0 707 428 6791 118 73 40 chr6 44004143 44005380 -145274174 + MER52C LTR ERV1 1 1278 0 3006 128 120 77 chr6 44005380 44005759 -145273795 - MER39 LTR ERV1 -279 428 6 258 330 11 0 chr6 44005864 44005952 -145273602 + MIR SINE MIR 33 121 -87 1845 177 0 0 chr6 44006279 44006585 -145272969 + AluSx SINE Alu 1 306 0 256 130 65 0 chr6 44006815 44006861 -145272693 + MIR SINE MIR 114 162 -100 659 261 0 13 chr6 44006935 44007088 -145272466 + MIR SINE MIR 15 165 -97 2482 84 3 0 chr6 44007123 44007419 -145272135 + AluSp SINE Alu 1 297 -16 518 248 9 18 chr6 44007910 44008053 -145271501 + MIR SINE MIR 14 142 -66 2397 103 0 0 chr6 44008470 44008771 -145270783 + AluSg SINE Alu 1 301 -9 187 100 25 25 chr6 44008872 44008912 -145270642 + (GA)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr6 44009039 44009085 -145270469 + (TG)n Simple_repeat Simple_repeat 2 47 0 2027 148 0 13 chr6 44009616 44009921 -145269633 + AluJo SINE Alu 1 301 -11 269 230 90 30 chr6 44010001 44010101 -145269453 - MIR SINE MIR 0 262 157 288 0 0 0 chr6 44010106 44010138 -145269416 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 315 63 9 chr6 44010189 44010300 -145269254 - MIR SINE MIR -92 170 54 199 333 14 0 chr6 44010278 44010347 -145269207 - MIR SINE MIR -73 135 66 * 197 306 0 47 chr6 44010641 44010726 -145268828 + L2 LINE L2 3005 3085 -187 336 287 35 65 chr6 44011126 44011163 -145268391 + L2 LINE L2 3077 3114 -199 2488 59 10 0 chr6 44011163 44011470 -145268084 - AluY SINE Alu -1 310 1 336 287 35 65 chr6 44011470 44011518 -145268036 + L2 LINE L2 3114 3162 -151 2428 57 4 0 chr6 44011518 44011841 -145267713 + AluSp SINE Alu 1 324 0 336 287 35 65 chr6 44011841 44011983 -145267571 + L2 LINE L2 3162 3299 -14 221 300 167 42 chr6 44013787 44014050 -145265504 + L2 LINE L2 2977 3272 0 2572 72 3 0 chr6 44014178 44014482 -145265072 - AluSp SINE Alu -8 305 1 195 69 0 0 chr6 44015037 44015066 -145264488 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 281 120 52 chr6 44015147 44015496 -145264058 + L2 LINE L2 2851 3223 -49 377 247 173 37 chr6 44016118 44016389 -145263165 - LTR16A LTR ERVL -89 361 54 2403 68 4 0 chr6 44016800 44017103 -145262451 - AluSg1 SINE Alu 0 304 1 1178 142 71 5 chr6 44017144 44017341 -145262213 - AluJo SINE Alu -16 296 87 632 178 0 89 chr6 44017386 44017558 -145261996 - MER53 DNA DNA -3 186 33 2425 96 0 6 chr6 44017558 44017872 -145261682 - AluSq SINE Alu -1 312 1 632 178 0 89 chr6 44017872 44017901 -145261653 - MER53 DNA DNA -156 33 3 1903 85 0 4 chr6 44018678 44018925 -145260629 + AluSg SINE Alu 64 309 -1 724 185 159 15 chr6 44019513 44019708 -145259846 - MIR SINE MIR -31 231 9 245 311 19 0 chr6 44020227 44020333 -145259221 + MIR SINE MIR 30 137 -71 238 283 35 18 chr6 44020348 44020461 -145259093 - L1MC5 LINE L1 -36 7925 7811 1380 212 44 21 chr6 44020462 44020849 -145258705 - L1MC5 LINE L1 -232 7729 7334 1125 244 142 22 chr6 44020850 44021132 -145258422 + L2 LINE L2 2474 2721 -592 2301 118 3 0 chr6 44021132 44021436 -145258118 + AluSx SINE Alu 1 305 -7 1125 244 142 22 chr6 44021436 44021816 -145257738 + L2 LINE L2 2721 3224 -89 26 0 0 0 chr6 44021924 44021950 -145257604 + AT_rich Low_complexity Low_complexity 1 26 0 391 213 13 0 chr6 44021993 44022068 -145257486 - LTR16A1 LTR ERVL 0 457 382 759 240 30 70 chr6 44022102 44022373 -145257181 - LTR16A1 LTR ERVL -171 286 27 375 269 0 90 chr6 44022406 44022562 -145256992 - MIR SINE MIR -74 188 47 246 313 62 9 chr6 44022640 44022752 -145256802 - L2 LINE L2 -9 3304 3187 204 224 20 20 chr6 44022825 44022874 -145256680 - L2 LINE L2 -11 3302 3254 257 250 17 69 chr6 44022894 44023010 -145256544 - MIR SINE MIR -117 145 36 900 110 0 22 chr6 44023833 44024045 -145255509 + FLAM_C SINE Alu 1 209 0 475 247 76 36 chr6 44024239 44024362 -145255192 - L1MC5 LINE L1 -797 7164 7047 1962 156 0 13 chr6 44024362 44024677 -145254877 - AluJo SINE Alu -1 311 1 2281 109 0 3 chr6 44024679 44024983 -145254571 - AluSg SINE Alu -7 303 1 2456 100 0 0 chr6 44024985 44025295 -145254259 - AluSg SINE Alu 0 310 1 475 247 76 36 chr6 44025295 44025388 -145254166 - L1MC5 LINE L1 -914 7047 6933 1595 178 108 46 chr6 44025407 44025824 -145253730 - MSTB2 LTR MaLR 0 457 15 1688 159 29 63 chr6 44026063 44026378 -145253176 - AluJb SINE Alu -6 306 3 2335 119 0 0 chr6 44026438 44026749 -145252805 - AluSx SINE Alu 0 312 2 337 273 31 98 chr6 44026766 44026841 -145252713 - L1MB8 LINE L1 -295 5883 5805 2057 162 0 3 chr6 44026841 44027150 -145252404 - AluJb SINE Alu -4 308 1 337 273 31 98 chr6 44027150 44027268 -145252286 - L1MB8 LINE L1 -373 5805 5703 674 282 14 14 chr6 44027319 44027535 -145252019 - L1MB8 LINE L1 -479 5691 5476 498 153 87 153 chr6 44027560 44027679 -145251875 - L1MC5 LINE L1 -997 6964 6839 1974 136 3 17 chr6 44027679 44027974 -145251580 - AluSx SINE Alu -21 291 1 498 153 87 153 chr6 44027974 44028025 -145251529 - L1MC5 LINE L1 -1122 6839 6786 2268 65 44 3 chr6 44028025 44028319 -145251235 + AluY SINE Alu 1 306 -5 498 153 87 153 chr6 44028319 44028401 -145251153 - L1MC5 LINE L1 -1175 6786 6728 2821 147 19 30 chr6 44028415 44028698 -145250856 - L1MB7 LINE L1 -16 6168 5893 2407 103 3 0 chr6 44028698 44029010 -145250544 - AluSq SINE Alu 0 313 1 2821 147 19 30 chr6 44029010 44029297 -145250257 - L1MB7 LINE L1 -291 5893 5604 2253 108 0 22 chr6 44029297 44029611 -145249943 - AluSx SINE Alu -5 307 1 2310 109 0 7 chr6 44029626 44029930 -145249624 - AluJb SINE Alu -10 302 1 240 292 33 58 chr6 44029993 44030113 -145249441 - MIR3 SINE MIR -31 177 61 2505 80 3 13 chr6 44030260 44030573 -145248981 - AluSp SINE Alu -3 310 1 354 219 44 44 chr6 44030678 44030792 -145248762 + MER103 DNA DNA 4 117 -49 3427 144 8 14 chr6 44030798 44031417 -145248137 + L1MC1 LINE L1 5719 6333 0 265 292 169 27 chr6 44031417 44031718 -145247836 - L2 LINE L2 -134 3179 2836 24 53 0 0 chr6 44031812 44031850 -145247704 + AT_rich Low_complexity Low_complexity 1 38 0 326 117 0 50 chr6 44031850 44031910 -145247644 - HY4 scRNA scRNA 0 93 37 480 279 333 13 chr6 44031910 44032739 -145246815 - L2 LINE L2 -611 2703 1610 245 289 211 0 chr6 44032951 44033065 -145246489 - MIR SINE MIR -73 189 52 202 262 16 0 chr6 44033155 44033216 -145246338 - MIR SINE MIR -77 131 70 185 182 0 0 chr6 44033439 44033472 -145246082 + MER5B DNA MER1_type 7 39 -139 1828 163 0 14 chr6 44033509 44033797 -145245757 + AluJb SINE Alu 1 284 -28 711 239 75 0 chr6 44033848 44034098 -145245456 - L1ME3 LINE L1 -86 6076 5801 1023 259 89 22 chr6 44034102 44034472 -145245082 - LTR16A LTR ERVL -4 446 52 282 318 19 52 chr6 44034713 44034921 -145244633 - MERVL LTR ERVL -228 5257 5059 361 349 29 12 chr6 44035170 44035342 -145244212 - MERVL LTR ERVL -926 4838 4664 742 152 53 0 chr6 44035352 44035484 -145244070 - FLAM_C SINE Alu -4 139 1 1009 129 84 44 chr6 44035486 44035523 -145244031 - L1MA8 LINE L1 0 6291 6257 2046 123 0 10 chr6 44035523 44035823 -145243731 + AluJb SINE Alu 1 297 -15 1009 129 84 44 chr6 44035823 44036010 -145243544 - L1MA8 LINE L1 -34 6257 6058 2038 292 88 20 chr6 44036149 44036705 -145242849 - HERV16 LTR ERVL -2763 2233 1717 1477 157 3 70 chr6 44036705 44036991 -145242563 - AluJo SINE Alu -45 267 1 2038 292 88 20 chr6 44036991 44037526 -145242028 - HERV16 LTR ERVL -3279 1717 1044 442 316 73 31 chr6 44037654 44037942 -145241612 - HERV16 LTR ERVL -4450 546 247 1474 123 67 27 chr6 44038204 44038230 -145241324 - L1P4 LINE L1 -364 5802 5778 2416 88 0 0 chr6 44038230 44038536 -145241018 - AluSq SINE Alu -7 306 1 1474 123 67 27 chr6 44038536 44038809 -145240745 - L1P4 LINE L1 -387 5779 5491 1072 137 0 58 chr6 44038810 44039000 -145240554 - AluSg/x SINE Alu 0 310 132 2334 88 7 0 chr6 44039000 44039306 -145240248 - AluSp SINE Alu -5 308 1 961 191 40 1 chr6 44039306 44039570 -145239984 + L1PA16 LINE L1 5858 6161 0 509 278 183 27 chr6 44039599 44039862 -145239692 - LTR16A LTR ERVL -100 357 54 1006 273 35 3 chr6 44039922 44040233 -145239321 - L1ME LINE L1 -386 5776 5456 296 290 114 40 chr6 44040571 44040747 -145238807 - MIR SINE MIR -47 215 27 528 203 0 77 chr6 44040992 44041063 -145238491 - MER5A DNA MER1_type -53 136 80 1721 171 24 3 chr6 44041063 44041361 -145238193 - AluJo SINE Alu -8 304 1 528 203 0 77 chr6 44041361 44041432 -145238122 - MER5A DNA MER1_type -109 80 5 194 265 48 133 chr6 44041969 44042078 -145237476 + MER5A DNA MER1_type 37 129 -60 2335 90 0 0 chr6 44042078 44042377 -145237177 - AluSx SINE Alu -13 299 1 194 265 48 133 chr6 44042377 44042433 -145237121 + MER5A DNA MER1_type 129 188 -1 189 216 0 0 chr6 44042619 44042656 -145236898 + MIR SINE MIR 113 149 -113 239 238 89 69 chr6 44043282 44043383 -145236171 + MIR3 SINE MIR 106 208 0 396 232 58 100 chr6 44043418 44043556 -145235998 + MIR SINE MIR 24 153 -109 2037 114 6 19 chr6 44043556 44043872 -145235682 - AluSx SINE Alu 0 312 1 396 232 58 100 chr6 44043872 44043923 -145235631 + MIR SINE MIR 153 205 -57 * 586 230 22 7 chr6 44043921 44044056 -145235498 - MIR SINE MIR 0 262 126 355 205 60 0 chr6 44044558 44044641 -145234913 - MER5B DNA MER1_type 0 178 91 2181 93 0 0 chr6 44044657 44044984 -145234570 - AluSc SINE Alu 0 327 1 563 195 0 0 chr6 44044984 44045102 -145234452 - L1ME LINE L1 -814 5332 5215 1911 159 7 3 chr6 44045140 44045442 -145234112 + AluJb SINE Alu 1 303 -9 1862 154 44 29 chr6 44045458 44045509 -145234045 + L1M4 LINE L1 4924 4973 -1207 3208 126 41 54 chr6 44045509 44046043 -145233511 - MER1A DNA MER1_type 0 527 1 1862 154 44 29 chr6 44046043 44046136 -145233418 + L1M4 LINE L1 4973 5063 -1117 2168 117 0 7 chr6 44046136 44046445 -145233109 + AluSx SINE Alu 1 307 -5 1862 154 44 29 chr6 44046445 44046881 -145232673 + L1M4 LINE L1 5063 5502 -678 262 182 0 0 chr6 44046884 44046928 -145232626 + MER57A LTR ERV1 301 344 -59 415 179 12 3 chr6 44046937 44047034 -145232520 + L1M4 LINE L1 5478 5573 -601 4811 93 17 14 chr6 44047034 44047799 -145231755 - Tigger1 DNA MER2_type -1086 1332 566 313 163 0 8 chr6 44047814 44047878 -145231676 - Alu SINE Alu -249 53 1 321 244 67 67 chr6 44047977 44048112 -145231442 - MIR3 SINE MIR -30 178 44 229 238 79 0 chr6 44048293 44048356 -145231198 + MER5A DNA MER1_type 6 73 -116 2144 107 3 10 chr6 44048374 44048682 -145230872 + AluSg SINE Alu 1 306 -4 427 276 126 60 chr6 44048896 44049083 -145230471 + MLT1H1 LTR MaLR 184 357 -198 2417 68 0 3 chr6 44049083 44049390 -145230164 - AluY SINE Alu -5 306 1 427 276 126 60 chr6 44049390 44049550 -145230004 + MLT1H1 LTR MaLR 357 554 -1 348 260 31 10 chr6 44049551 44049647 -145229907 + MER5A DNA MER1_type 92 189 0 1295 145 0 26 chr6 44049696 44049923 -145229631 + AluJo SINE Alu 92 312 0 426 254 98 71 chr6 44050366 44050590 -145228964 - L1ME2 LINE L1 -1 6163 5932 * 2613 128 38 75 chr6 44050588 44050700 -145228854 - L1MDa LINE L1 -4137 2403 2288 189 107 0 0 chr6 44050700 44050728 -145228826 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2613 128 38 75 chr6 44050728 44050871 -145228683 - L1MDa LINE L1 -4252 2288 2141 225 0 0 0 chr6 44050871 44050896 -145228658 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 44050895 44050916 -145228638 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2613 128 38 75 chr6 44050896 44050916 -145228638 - L1MDa LINE L1 -4399 2141 2122 2095 108 3 0 chr6 44050916 44051204 -145228350 - AluSq SINE Alu -13 300 12 2613 128 38 75 chr6 44051204 44051601 -145227953 - L1MDa LINE L1 -4418 2122 1773 207 0 0 0 chr6 44051603 44051626 -145227928 + (TTA)n Simple_repeat Simple_repeat 2 24 0 886 165 78 73 chr6 44051631 44051837 -145227717 - AluJo SINE Alu -20 292 86 4247 203 130 50 chr6 44051837 44052256 -145227298 - L1MDa LINE L1 -4760 1780 1396 1943 133 7 10 chr6 44052256 44052556 -145226998 - AluSx SINE Alu -13 299 1 4247 203 130 50 chr6 44052556 44052839 -145226715 - L1MDa LINE L1 -5144 1396 1137 1771 180 10 0 chr6 44052839 44053139 -145226415 - AluJb SINE Alu -9 303 1 4247 203 130 50 chr6 44053139 44054067 -145225487 - L1MDa LINE L1 -5403 1137 18 397 214 11 0 chr6 44054068 44054157 -145225397 - L1ME2 LINE L1 -213 5949 5860 3523 134 19 28 chr6 44054167 44054722 -145224832 - L1MB1 LINE L1 -1 6167 5609 183 42 0 0 chr6 44054722 44054746 -145224808 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2100 103 0 3 chr6 44054746 44055028 -145224526 - AluSq SINE Alu -31 282 2 3523 134 19 28 chr6 44055028 44055051 -145224503 - L1MB1 LINE L1 -557 5611 5593 877 138 0 29 chr6 44055053 44055191 -145224363 - AluJo SINE Alu -178 134 1 4111 159 27 47 chr6 44055191 44056484 -145223070 - L1MB1 LINE L1 -561 5607 4354 359 206 76 0 chr6 44056547 44056639 -145222915 - L1ME2 LINE L1 -295 5875 5777 413 250 0 24 chr6 44056680 44056804 -145222750 - L1ME2 LINE L1 -364 5798 5678 863 284 52 66 chr6 44056815 44057338 -145222216 + L2 LINE L2 2605 3133 -180 2030 113 10 3 chr6 44057338 44057631 -145221923 - AluSx SINE Alu -11 301 7 863 284 52 66 chr6 44057631 44057809 -145221745 + L2 LINE L2 3133 3312 -1 193 94 31 0 chr6 44057919 44057951 -145221603 + MER5A DNA MER1_type 43 75 -114 * 375 270 0 0 chr6 44057944 44058033 -145221521 - MER5A DNA MER1_type -80 109 21 232 280 231 28 chr6 44058017 44058160 -145221394 + MIR SINE MIR 80 251 -11 * 378 129 0 0 chr6 44058657 44058719 -145220835 + (TG)n Simple_repeat Simple_repeat 2 63 0 277 312 18 46 chr6 44059464 44059573 -145219981 + MIR SINE MIR 32 137 -71 501 267 42 0 chr6 44059655 44059775 -145219779 + L2 LINE L2 3188 3312 -1 201 311 74 41 chr6 44060900 44061022 -145218532 + MIR SINE MIR 59 184 -78 1692 256 81 12 chr6 44063640 44064522 -145215032 + L2 LINE L2 2301 3249 -64 891 202 130 0 chr6 44065100 44065347 -145214207 - LTR16C LTR ERVL -2 489 211 348 299 108 25 chr6 44065351 44065555 -145213999 + L2 LINE L2 3079 3299 -14 633 170 101 57 chr6 44066349 44066508 -145213046 - MIR SINE MIR -90 172 7 685 231 91 20 chr6 44067105 44067304 -145212250 + MIR SINE MIR 47 259 -3 184 220 20 20 chr6 44067537 44067587 -145211967 - L2 LINE L2 -16 3256 3207 534 344 5 27 chr6 44067650 44067874 -145211680 - L2 LINE L2 0 3313 3095 515 332 127 22 chr6 44068356 44068585 -145210969 - MIR SINE MIR -1 261 9 361 303 180 0 chr6 44068596 44068774 -145210780 + MIR SINE MIR 47 256 -6 314 315 290 6 chr6 44068846 44069008 -145210546 + MIR SINE MIR 50 257 -5 735 289 36 24 chr6 44069048 44069126 -145210428 + MIR SINE MIR 6 82 -180 3161 144 40 33 chr6 44069126 44069158 -145210396 - MLT2B3 LTR ERVL 0 554 524 308 83 21 0 chr6 44069158 44069206 -145210348 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3161 144 40 33 chr6 44069206 44069723 -145209831 - MLT2B3 LTR ERVL -30 524 1 735 289 36 24 chr6 44069723 44069897 -145209657 + MIR SINE MIR 82 261 -1 271 331 147 0 chr6 44069995 44070131 -145209423 + MIR SINE MIR 107 262 0 309 229 175 0 chr6 44070554 44070677 -145208877 - MIR SINE MIR -54 208 59 542 262 96 12 chr6 44071204 44071391 -145208163 - L1MC/D LINE L1 -435 5807 5604 219 88 0 0 chr6 44073804 44073838 -145205716 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 835 217 99 11 chr6 44074316 44074581 -145204973 - L1MC3 LINE L1 0 8042 7692 245 267 53 0 chr6 44074618 44074693 -145204861 - L1MC4 LINE L1 -365 7677 7599 275 321 95 7 chr6 44074709 44074846 -145204708 + L2 LINE L2 3162 3310 -3 293 306 119 68 chr6 44074879 44075248 -145204306 - L2 LINE L2 -9 3263 2876 2299 107 31 6 chr6 44077358 44077685 -145201869 - MER1B DNA MER1_type 0 337 3 847 225 97 18 chr6 44077739 44077966 -145201588 - MIR SINE MIR -15 247 3 182 278 167 22 chr6 44082494 44082584 -145196970 + MIR SINE MIR 41 143 -65 569 232 103 0 chr6 44083648 44083803 -145195751 + MIR SINE MIR 21 191 -71 271 206 27 14 chr6 44084279 44084352 -145195202 + L2 LINE L2 2991 3064 -208 226 237 79 13 chr6 44086368 44086444 -145193110 - MIR3 SINE MIR -7 201 121 1836 161 7 3 chr6 44086642 44086947 -145192607 + AluJb SINE Alu 1 306 -6 268 309 66 28 chr6 44086997 44087178 -145192376 + L1MC4a LINE L1 5888 6075 -1733 206 236 0 0 chr6 44087247 44087302 -145192252 + A-rich Low_complexity Low_complexity 1 55 0 271 283 0 50 chr6 44088202 44088301 -145191253 - MIR3 SINE MIR -3 205 112 322 333 49 0 chr6 44089100 44089223 -145190331 + L2 LINE L2 3158 3286 -27 2089 105 10 3 chr6 44089240 44089535 -145190019 + AluSx SINE Alu 11 307 -5 2474 54 3 13 chr6 44089535 44089849 -145189705 + AluY SINE Alu 1 311 0 837 230 104 142 chr6 44089874 44090395 -145189159 - L2 LINE L2 -6 3307 2807 200 229 229 0 chr6 44091420 44091481 -145188073 - MIR SINE MIR -70 192 118 2005 105 14 20 chr6 44092257 44092552 -145187002 + AluSq SINE Alu 7 299 -14 728 271 44 0 chr6 44092721 44092902 -145186652 + MER5A DNA MER1_type 1 189 0 206 286 104 0 chr6 44092903 44092980 -145186574 + L3b LINE CR1 1493 1577 -6 453 272 210 6 chr6 44093135 44093297 -145186257 - MER91A DNA MER1_type -1 195 1 1833 150 35 3 chr6 44094004 44094290 -145185264 - AluJb SINE Alu -17 295 1 250 298 0 0 chr6 44094291 44094348 -145185206 - MIR SINE MIR -102 160 104 250 279 2 0 chr6 44094797 44094862 -145184692 - MIR SINE MIR -54 154 88 241 292 192 8 chr6 44095143 44095263 -145184291 - MIR3 SINE MIR -15 193 52 250 283 111 10 chr6 44095525 44095624 -145183930 - MIR SINE MIR -76 132 24 244 318 140 9 chr6 44098053 44098160 -145181394 + MIR3 SINE MIR 88 208 0 352 299 51 13 chr6 44100079 44100236 -145179318 + MIR SINE MIR 51 213 -49 245 271 0 60 chr6 44100290 44100423 -145179131 + GA-rich Low_complexity Low_complexity 2 126 0 209 313 16 0 chr6 44100589 44100653 -145178901 + L2 LINE L2 2990 3054 -218 236 315 41 0 chr6 44100663 44100736 -145178818 - MIR3 SINE MIR -50 158 83 394 196 20 0 chr6 44101667 44101769 -145177785 + (CA)n Simple_repeat Simple_repeat 2 105 0 192 152 0 0 chr6 44103111 44103144 -145176410 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 295 228 55 79 chr6 44103244 44103371 -145176183 - L2 LINE L2 -128 3144 3021 2103 98 24 3 chr6 44104434 44104721 -145174833 + AluSq SINE Alu 1 293 -20 898 154 0 0 chr6 44104795 44104938 -145174616 - FLAM_C SINE Alu 0 143 1 1172 209 105 48 chr6 44104938 44105311 -145174243 + MLT1J LTR MaLR 61 454 -57 185 286 0 0 chr6 44105739 44105788 -145173766 + MIR SINE MIR 59 107 -155 2021 113 0 0 chr6 44105984 44106259 -145173295 - AluSx SINE Alu 0 312 38 245 304 78 17 chr6 44106285 44106400 -145173154 - MIR SINE MIR -63 145 24 241 374 0 8 chr6 44106642 44106765 -145172789 + MLT1K LTR MaLR 219 340 -248 314 281 33 12 chr6 44107177 44107322 -145172232 + MIR3 SINE MIR 8 152 -68 225 290 242 0 chr6 44107743 44107867 -145171687 - MIR3 SINE MIR -33 175 22 * 245 309 151 26 chr6 44107845 44107997 -145171557 - MIR SINE MIR -36 226 56 564 338 139 12 chr6 44108859 44109182 -145170372 - L2 LINE L2 0 3313 2950 449 295 111 46 chr6 44109281 44109498 -145170056 - MIR SINE MIR -24 238 8 674 233 95 57 chr6 44110250 44110508 -145169046 - L2 LINE L2 -2 3311 3039 1909 88 19 88 chr6 44110508 44110826 -145168728 - AluSx SINE Alu -10 302 7 674 233 95 57 chr6 44110826 44110863 -145168691 - L2 LINE L2 -274 3039 3005 388 318 53 32 chr6 44110890 44111079 -145168475 - MIR3 SINE MIR 0 208 16 582 263 94 5 chr6 44111757 44111978 -145167576 + MIR SINE MIR 3 248 -14 272 308 11 0 chr6 44112244 44112335 -145167219 - MIR SINE MIR -57 205 114 241 260 0 0 chr6 44112718 44112745 -145166809 + polypurine Low_complexity Low_complexity 1 27 -333 1415 167 101 17 chr6 44112745 44113033 -145166521 + AluJo SINE Alu 1 312 0 241 260 0 0 chr6 44113033 44113078 -145166476 + polypurine Low_complexity Low_complexity 26 360 0 2074 123 0 0 chr6 44113108 44113424 -145166130 + AluSx SINE Alu 1 316 0 186 43 0 0 chr6 44113884 44113907 -145165647 + (CA)n Simple_repeat Simple_repeat 2 24 0 299 268 103 0 chr6 44114350 44114447 -145165107 - L2 LINE L2 -10 3303 3197 2336 74 0 16 chr6 44114466 44114776 -145164778 - AluSx SINE Alu -7 305 1 195 337 81 0 chr6 44114814 44114900 -145164654 + L2 LINE L2 3146 3238 -34 226 357 92 0 chr6 44115384 44115482 -145164072 - MIR3 SINE MIR -87 121 15 348 284 43 0 chr6 44115893 44116009 -145163545 - MIR3 SINE MIR -7 201 81 1057 208 20 28 chr6 44116023 44116273 -145163281 - MIR SINE MIR -13 249 2 699 225 91 35 chr6 44116378 44116609 -145162945 - MIR SINE MIR 0 262 19 1093 232 77 32 chr6 44117023 44117308 -145162246 - AluJo SINE Alu 0 302 5 280 299 175 22 chr6 44117593 44117730 -145161824 + MIR SINE MIR 84 241 -21 1848 83 132 0 chr6 44117780 44118045 -145161509 - AluSg SINE Alu -10 300 1 314 301 66 22 chr6 44118219 44118355 -145161199 + MIR3 SINE MIR 35 176 -32 395 300 29 43 chr6 44118476 44118653 -145160901 - MIR SINE MIR -50 212 35 272 310 106 9 chr6 44118983 44119096 -145160458 - MIR SINE MIR -80 182 59 216 211 0 0 chr6 44119364 44119402 -145160152 - MIR SINE MIR -111 151 114 384 246 51 42 chr6 44119618 44119736 -145159818 - MIR SINE MIR -74 188 70 2320 50 40 7 chr6 44119797 44120097 -145159457 + AluY SINE Alu 1 310 -1 265 306 118 14 chr6 44120529 44120673 -145158881 - MIR SINE MIR -90 172 14 222 313 55 16 chr6 44120746 44120874 -145158680 + MIR SINE MIR 84 216 -46 214 305 0 0 chr6 44121075 44121134 -145158420 + MIR SINE MIR 91 149 -113 330 270 61 26 chr6 44121997 44122112 -145157442 + L2 LINE L2 3109 3227 -45 2090 120 13 0 chr6 44122387 44122687 -145156867 - AluSx SINE Alu -8 304 1 1788 172 3 0 chr6 44123494 44123790 -145155764 - AluJo SINE Alu -15 297 1 348 272 93 26 chr6 44123813 44124112 -145155442 + MLT1J LTR MaLR 115 507 -4 2541 64 0 0 chr6 44124129 44124440 -145155114 + AluY SINE Alu 1 311 0 2193 112 0 3 chr6 44124798 44125110 -145154444 + AluSx SINE Alu 1 311 -1 288 337 51 0 chr6 44125376 44125474 -145154080 - MIR3 SINE MIR -54 154 52 554 255 7 7 chr6 44125525 44125670 -145153884 + L2 LINE L2 2935 3079 -234 751 179 0 0 chr6 44125670 44125787 -145153767 + AluJo/FLAM SINE Alu 1 117 -195 2238 106 0 10 chr6 44125788 44126099 -145153455 - AluSx SINE Alu -4 308 1 387 266 206 42 chr6 44126133 44126347 -145153207 + L2 LINE L2 3065 3313 0 493 204 15 8 chr6 44126705 44126837 -145152717 + ALR/Alpha Satellite centromeric 36 168 -4 573 305 16 0 chr6 44127078 44127268 -145152286 + L1ME3 LINE L1 5968 6160 -2 1558 174 16 38 chr6 44128537 44128853 -145150701 + AluJb SINE Alu 1 309 -3 2413 51 3 0 chr6 44129081 44129374 -145150180 - AluY SINE Alu -15 296 3 523 307 71 10 chr6 44129848 44130062 -145149492 - MIR SINE MIR 0 262 38 1683 249 159 35 chr6 44130936 44131874 -145147680 + L2 LINE L2 2171 3312 -1 269 287 81 43 chr6 44131941 44132150 -145147404 + L2 LINE L2 2894 3110 -162 330 187 93 13 chr6 44132578 44132653 -145146901 + MER5A DNA MER1_type 26 106 -83 193 277 19 57 chr6 44133770 44133864 -145145690 + MIR SINE MIR 111 149 -59 265 286 88 23 chr6 44137661 44137832 -145141722 - MIR SINE MIR -3 259 78 1589 196 0 24 chr6 44137832 44138123 -145141431 + AluJb SINE Alu 1 284 -28 2282 80 35 0 chr6 44138123 44138412 -145141142 - AluY SINE Alu -12 299 1 181 323 65 0 chr6 44138821 44138914 -145140640 - MIR SINE MIR -8 254 156 272 159 0 0 chr6 44139163 44139207 -145140347 + MADE1 DNA Mariner 1 44 -36 26 0 0 0 chr6 44139207 44139233 -145140321 + AT_rich Low_complexity Low_complexity 1 26 0 314 77 0 0 chr6 44139245 44139284 -145140270 - Alu SINE Alu -263 39 1 * 371 105 0 18 chr6 44139284 44139337 -145140217 + MADE1 DNA Mariner 29 80 0 1464 189 17 40 chr6 44139516 44139812 -145139742 + AluJo SINE Alu 2 290 -22 22 0 0 0 chr6 44139835 44139857 -145139697 + AT_rich Low_complexity Low_complexity 1 22 0 610 162 50 0 chr6 44141545 44141644 -145137910 - AluJb SINE Alu -207 105 2 631 94 0 0 chr6 44142907 44142992 -145136562 - AluSg/x SINE Alu -38 274 190 1776 122 16 4 chr6 44142992 44143237 -145136317 - AluSx SINE Alu -64 248 1 232 185 46 0 chr6 44143538 44143646 -145135908 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 218 240 162 78 chr6 44145741 44145895 -145133659 + MIR SINE MIR 14 180 -82 2525 259 66 11 chr6 44145973 44145999 -145133555 + L2 LINE L2 2135 2158 -1156 825 186 8 103 chr6 44145999 44146241 -145133313 + MER20 DNA MER1_type 1 219 0 2525 259 66 11 chr6 44146241 44147013 -145132541 + L2 LINE L2 2158 2977 -337 413 291 82 48 chr6 44147498 44147704 -145131850 + MIR SINE MIR 2 214 -48 334 226 57 65 chr6 44147708 44147832 -145131722 + HAL1 LINE L1 2385 2507 0 212 200 60 0 chr6 44147844 44147894 -145131660 + MIR SINE MIR 204 256 -6 1144 74 0 0 chr6 44149854 44149989 -145129565 + AluSq/x SINE Alu 1 135 -178 1949 114 4 4 chr6 44149991 44150264 -145129290 + AluYa5 SINE Alu 16 288 -23 196 267 17 17 chr6 44150368 44150428 -145129126 + L2 LINE L2 3119 3178 -94 2444 83 3 0 chr6 44151648 44151960 -145127594 + AluSq SINE Alu 1 313 0 2202 134 0 3 chr6 44151969 44152282 -145127272 + AluSx SINE Alu 1 312 0 237 229 0 43 chr6 44153739 44153809 -145125745 - MER5A DNA MER1_type -88 101 35 186 333 0 13 chr6 44153756 44153831 -145125723 + MER5A DNA MER1_type 115 188 -1 * 387 221 177 0 chr6 44153971 44154084 -145125470 + MER94 DNA DNA 1 133 -1 2778 135 107 68 chr6 44154186 44154449 -145125105 - MER7C DNA MER2_type -2426 602 351 1635 188 0 3 chr6 44154449 44154731 -145124823 + AluJo SINE Alu 17 297 -15 1952 131 37 13 chr6 44154735 44155033 -145124521 + AluSx SINE Alu 1 305 -7 2778 135 107 68 chr6 44155033 44155342 -145124212 - MER7C DNA MER2_type -2679 349 2 2117 140 0 3 chr6 44155830 44156123 -145123431 + AluSx SINE Alu 1 292 -20 266 146 0 0 chr6 44156208 44156249 -145123305 + Alu SINE Alu 251 291 -11 2550 70 0 10 chr6 44156500 44156814 -145122740 + AluY SINE Alu 1 311 0 339 235 227 25 chr6 44157117 44157236 -145122318 - MER46A DNA MER2_type -90 146 4 * 1151 151 21 0 chr6 44157236 44157327 -145122227 + MER46A DNA MER2_type 142 236 0 639 187 0 0 chr6 44157553 44157660 -145121894 + FLAM_C SINE Alu 2 108 -35 234 91 0 0 chr6 44157665 44157698 -145121856 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 796 138 22 36 chr6 44157726 44157864 -145121690 - FLAM_C SINE Alu -1 142 7 259 294 59 25 chr6 44158343 44158462 -145121092 - MIR3 SINE MIR -41 167 45 1472 175 58 55 chr6 44158755 44159063 -145120491 + AluJb SINE Alu 1 309 -3 217 324 14 0 chr6 44159072 44159143 -145120411 - MIR3 SINE MIR -13 195 124 1739 174 0 24 chr6 44159248 44159384 -145120170 + AluSx SINE Alu 1 139 -173 2555 60 0 3 chr6 44159384 44159685 -145119869 + AluY SINE Alu 1 300 -11 1739 174 0 24 chr6 44159685 44159876 -145119678 + AluSx SINE Alu 139 312 0 3678 206 89 102 chr6 44160129 44160764 -145118790 + L1MC3 LINE L1 6350 6991 -794 2325 99 0 0 chr6 44160764 44161068 -145118486 + AluY SINE Alu 1 304 -7 3678 206 89 102 chr6 44161068 44161225 -145118329 + L1MC3 LINE L1 6991 7148 -637 338 156 18 128 chr6 44161225 44161334 -145118220 + MLT1F1 LTR MaLR 35 131 -436 3678 206 89 102 chr6 44161334 44161867 -145117687 + L1MC3 LINE L1 7148 7766 -19 2243 119 0 0 chr6 44161937 44162240 -145117314 + AluSx SINE Alu 1 303 -9 733 208 25 0 chr6 44164798 44164957 -145114597 + LTR65 LTR ERV1 1 163 -506 389 268 34 48 chr6 44165086 44165299 -145114255 + LTR65 LTR ERV1 396 649 -17 911 266 45 34 chr6 44165483 44165840 -145113714 - L2 LINE L2 -1226 2088 1728 405 256 150 58 chr6 44165854 44165986 -145113568 + L1MC4a LINE L1 5705 5823 -1985 1697 151 17 34 chr6 44165986 44166278 -145113276 - AluJo SINE Alu -25 287 1 405 256 150 58 chr6 44166278 44166332 -145113222 + L1MC4a LINE L1 5823 5871 -1937 2334 95 20 0 chr6 44166332 44166627 -145112927 + AluSx SINE Alu 1 301 -11 405 256 150 58 chr6 44166627 44166872 -145112682 + L1MC4a LINE L1 5871 6177 -1631 187 211 0 0 chr6 44166913 44166951 -145112603 + L2 LINE L2 3214 3251 -21 28 38 0 19 chr6 44167160 44167180 -145112374 + AT_rich Low_complexity Low_complexity 1 20 -32 1329 224 43 11 chr6 44167180 44167457 -145112097 + AluJo SINE Alu 2 287 -25 28 38 0 19 chr6 44167457 44167489 -145112065 + AT_rich Low_complexity Low_complexity 20 52 0 452 291 91 19 chr6 44167812 44168022 -145111532 + L1MC5 LINE L1 6995 7219 -742 4538 156 78 39 chr6 44168124 44168200 -145111354 + L1MB3 LINE L1 4663 4735 -1448 2087 105 3 14 chr6 44168200 44168495 -145111059 + AluSx SINE Alu 1 292 -20 4538 156 78 39 chr6 44168495 44169875 -145109679 + L1MB3 LINE L1 4735 6178 -5 2203 111 20 0 chr6 44170457 44170755 -145108799 - AluSx SINE Alu -8 304 1 2096 122 6 31 chr6 44170938 44171257 -145108297 - AluSq SINE Alu -2 311 1 2414 82 0 7 chr6 44172470 44172773 -145106781 - AluY SINE Alu -10 301 1 1648 200 0 17 chr6 44172797 44173097 -145106457 - AluJb SINE Alu -14 298 4 3896 151 70 21 chr6 44173102 44173349 -145106205 - L1MC1 LINE L1 -11 6322 6088 2295 96 3 0 chr6 44173349 44173640 -145105914 + AluSg SINE Alu 1 292 -18 3896 151 70 21 chr6 44173640 44174328 -145105226 - L1MC1 LINE L1 -245 6088 5324 2228 112 3 0 chr6 44174328 44174624 -145104930 - AluSp SINE Alu -14 299 3 2080 127 0 42 chr6 44174636 44174944 -145104610 - AluSx SINE Alu -17 295 1 2379 56 0 30 chr6 44174953 44175255 -145104299 - AluY SINE Alu -18 293 1 1465 242 32 27 chr6 44175257 44175457 -145104097 - L1M4 LINE L1 -2366 3780 3582 1620 186 41 0 chr6 44175457 44175748 -145103806 + AluJb SINE Alu 1 303 -9 1465 242 32 27 chr6 44175748 44175989 -145103565 - L1M4 LINE L1 -2564 3582 3337 635 170 10 0 chr6 44175990 44176090 -145103464 - AluJ/FLAM SINE Alu -210 102 2 2080 114 71 8 chr6 44176090 44176458 -145103096 - L1MCa LINE L1 -4827 1599 1209 3087 163 54 2 chr6 44176458 44176960 -145102594 - MER44D DNA MER2_type 0 605 23 2267 101 3 0 chr6 44177008 44177304 -145102250 - AluSc SINE Alu -12 297 1 751 203 0 0 chr6 44177309 44177437 -145102117 - FLAM_A SINE Alu -5 128 1 2348 154 68 8 chr6 44177438 44177952 -145101602 - L1MCa LINE L1 -5221 1205 631 2097 128 0 3 chr6 44177955 44178252 -145101302 - AluSx SINE Alu -16 296 1 984 233 54 0 chr6 44178289 44178535 -145101019 + L1MB5 LINE L1 5908 6174 0 324 276 125 61 chr6 44178568 44178782 -145100772 + L1ME4a LINE L1 5789 6031 -90 2286 112 0 0 chr6 44178782 44179078 -145100476 + AluSx SINE Alu 1 296 -16 324 276 125 61 chr6 44179078 44179174 -145100380 + L1ME4a LINE L1 6031 6119 -2 1751 82 141 37 chr6 44179177 44179446 -145100108 - AluSc SINE Alu -12 297 1 2228 199 61 21 chr6 44179520 44180176 -145099378 + L1MCa LINE L1 2365 3039 -3387 1080 164 5 32 chr6 44180198 44180387 -145099167 + AluJo SINE Alu 7 190 -122 219 186 0 0 chr6 44180408 44180451 -145099103 + A-rich Low_complexity Low_complexity 1 43 0 503 130 0 11 chr6 44180452 44180544 -145099010 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 365 156 0 0 chr6 44180544 44180608 -145098946 + L1MCa LINE L1 3046 3109 -3317 686 156 16 16 chr6 44180615 44180737 -145098817 + AluJo SINE Alu 15 136 -176 1773 199 115 66 chr6 44180777 44181505 -145098049 + L1MCa LINE L1 3121 3884 -2542 360 145 0 72 chr6 44181540 44181609 -145097945 + Charlie5 DNA MER1_type 1 64 -2548 283 89 54 0 chr6 44181611 44181667 -145097887 + Charlie5 DNA MER1_type 2428 2486 -126 1777 167 7 13 chr6 44181871 44182170 -145097384 + AluJb SINE Alu 1 297 -15 309 109 0 0 chr6 44182170 44182216 -145097338 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 2071 126 3 26 chr6 44182236 44182545 -145097009 - AluSx SINE Alu -10 302 1 1278 199 63 24 chr6 44182599 44182886 -145096668 + AluJo SINE Alu 1 298 -14 1975 135 0 3 chr6 44184454 44184811 -145094743 - AluSx SINE Alu 0 356 1 1905 125 57 27 chr6 44185055 44185351 -145094203 + AluJb SINE Alu 1 305 -7 259 271 299 9 chr6 44186464 44186571 -145092983 + MIR SINE MIR 103 240 -22 283 248 171 47 chr6 44186757 44186886 -145092668 + MER20B DNA MER1_type 45 189 -594 2303 79 4 0 chr6 44187054 44187333 -145092221 + AluSc SINE Alu 1 280 -29 288 77 0 0 chr6 44187333 44187372 -145092182 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2359 102 0 0 chr6 44187422 44187725 -145091829 + AluSg SINE Alu 1 303 -7 229 292 323 0 chr6 44187789 44187885 -145091669 - MIR SINE MIR -133 129 3 7858 124 33 32 chr6 44188496 44189330 -145090224 + HSMAR2 DNA Mariner 13 845 -457 1686 150 37 17 chr6 44189330 44189624 -145089930 + AluJo SINE Alu 1 300 -12 7858 124 33 32 chr6 44189624 44189637 -145089917 + HSMAR2 DNA Mariner 845 856 -446 2266 103 0 10 chr6 44189637 44189938 -145089616 + AluSq SINE Alu 1 298 -15 7858 124 33 32 chr6 44189938 44190324 -145089230 + HSMAR2 DNA Mariner 856 1251 -51 2129 120 3 3 chr6 44190324 44190625 -145088929 - AluSx SINE Alu -11 301 1 7858 124 33 32 chr6 44190625 44190677 -145088877 + HSMAR2 DNA Mariner 1251 1301 -1 1909 158 10 0 chr6 44191991 44192294 -145087260 - AluJo SINE Alu -5 307 2 486 317 163 29 chr6 44192340 44192854 -145086700 - L2 LINE L2 -1022 2292 1710 1816 131 0 19 chr6 44194219 44194486 -145085068 - AluSg SINE Alu -48 262 1 1058 103 0 0 chr6 44194486 44194622 -145084932 - AluSq/x SINE Alu -177 136 1 270 136 0 0 chr6 44195391 44195435 -145084119 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 228 158 30 chr6 44196386 44196487 -145083067 + L2 LINE L2 3199 3312 -1 1861 89 13 80 chr6 44197017 44197378 -145082176 - AluSx SINE Alu 0 341 1 39 0 0 0 chr6 44198351 44198390 -145081164 + AT_rich Low_complexity Low_complexity 1 39 0 2279 106 7 3 chr6 44198413 44198715 -145080839 - AluSx SINE Alu -9 303 1 1455 177 104 24 chr6 44199497 44199785 -145079769 + AluJo SINE Alu 1 311 -1 1983 138 23 7 chr6 44199842 44200147 -145079407 - AluSx SINE Alu -2 310 1 692 148 0 57 chr6 44200204 44200326 -145079228 - FLAM_C SINE Alu 0 143 29 1571 152 16 8 chr6 44200363 44200613 -145078941 + AluJo SINE Alu 50 301 -11 28 48 0 0 chr6 44201743 44201785 -145077769 + AT_rich Low_complexity Low_complexity 1 42 0 750 147 0 0 chr6 44201797 44201899 -145077655 - FLAM_C SINE Alu -40 103 2 1400 246 147 17 chr6 44201989 44202574 -145076980 - L1MC4a LINE L1 -1788 6020 5360 2252 89 3 13 chr6 44202576 44202879 -145076675 + AluSg SINE Alu 1 300 -10 1977 136 17 14 chr6 44204691 44204986 -145074568 + AluSx SINE Alu 2 297 -15 693 124 35 0 chr6 44204986 44205099 -145074455 + L1MB3 LINE L1 6063 6179 -4 228 67 0 0 chr6 44205102 44205132 -145074422 + (T)n Simple_repeat Simple_repeat 1 30 0 2135 116 0 3 chr6 44205148 44205442 -145074112 + AluSx SINE Alu 1 293 -19 306 269 71 43 chr6 44205460 44205601 -145073953 + MIR SINE MIR 62 206 -56 449 192 32 72 chr6 44205616 44205741 -145073813 - L2 LINE L2 -2 3311 3192 311 244 33 12 chr6 44205942 44206033 -145073521 - MIR3 SINE MIR -53 155 63 2353 83 13 0 chr6 44206242 44206544 -145073010 - AluSx SINE Alu -6 306 1 1698 164 13 20 chr6 44206641 44206946 -145072608 + AluJb SINE Alu 1 303 -9 627 239 95 14 chr6 44207829 44208051 -145071503 + L1MC4 LINE L1 7779 8018 -24 2724 39 0 0 chr6 44208467 44208778 -145070776 + AluY SINE Alu 1 311 0 1531 55 0 0 chr6 44208778 44208959 -145070595 + AluY SINE Alu 131 311 0 1472 163 54 11 chr6 44209003 44209280 -145070274 + L1MB2 LINE L1 5620 5908 -275 710 153 47 82 chr6 44209285 44209418 -145070136 + L1MB2 LINE L1 5997 6124 -47 1569 159 13 68 chr6 44209418 44209726 -145069828 + AluJb SINE Alu 1 291 -21 710 153 47 82 chr6 44209726 44209762 -145069792 + L1MB2 LINE L1 6124 6160 -11 1716 178 0 4 chr6 44209776 44210057 -145069497 + AluJo SINE Alu 14 293 -19 761 130 65 0 chr6 44210159 44210267 -145069287 - FLAM_C SINE Alu -28 115 1 694 178 7 53 chr6 44210275 44210427 -145069127 - L1MB7 LINE L1 -2 6182 6038 1433 226 119 5 chr6 44210429 44210850 -145068704 + MLT1D LTR MaLR 37 505 0 815 165 0 0 chr6 44210971 44211092 -145068462 - FLAM_A SINE Alu -11 122 2 1420 151 11 151 chr6 44211586 44211796 -145067758 - AluJo SINE Alu 0 302 159 1419 156 80 33 chr6 44211796 44212072 -145067482 + AluJo SINE Alu 1 289 -23 1420 151 11 151 chr6 44212072 44212211 -145067343 - AluJo SINE Alu -143 159 2 814 178 0 0 chr6 44212234 44212352 -145067202 - FLAM_C SINE Alu -15 118 1 21 0 0 0 chr6 44212571 44212592 -145066962 + AT_rich Low_complexity Low_complexity 1 21 0 2339 64 3 17 chr6 44212901 44213199 -145066355 + AluSp SINE Alu 1 294 -19 1913 244 108 23 chr6 44214025 44214753 -145064801 + L1MC4 LINE L1 7113 7902 -140 1041 221 27 16 chr6 44214770 44215028 -145064526 + L1MB7 LINE L1 5519 5779 -387 921 139 15 0 chr6 44215301 44215438 -145064116 - FRAM SINE Alu -14 162 24 2216 103 3 3 chr6 44215465 44215755 -145063799 - AluSq SINE Alu -10 303 14 1848 158 7 17 chr6 44215755 44216052 -145063502 - AluJb SINE Alu -18 294 1 1381 213 59 42 chr6 44216358 44216540 -145063014 + L1MB7 LINE L1 5759 5936 -248 2379 88 0 3 chr6 44216540 44216836 -145062718 - AluSq SINE Alu -18 295 1 1381 213 59 42 chr6 44216836 44217057 -145062497 + L1MB7 LINE L1 5936 6169 -15 348 265 34 0 chr6 44217064 44217181 -145062373 + L1MC4 LINE L1 7922 8042 0 2106 114 36 16 chr6 44217192 44217498 -145062056 + AluSx SINE Alu 1 312 0 1530 152 83 0 chr6 44217768 44218032 -145061522 + AluJb SINE Alu 21 306 -6 585 240 77 16 chr6 44218365 44218548 -145061006 + HAL1 LINE L1 92 285 -2222 1824 140 54 4 chr6 44218733 44219012 -145060542 - AluSx SINE Alu -19 293 1 846 120 16 16 chr6 44219057 44219182 -145060372 + FLAM_C SINE Alu 1 125 -8 1376 226 98 34 chr6 44219186 44219829 -145059725 + HAL1 LINE L1 822 1695 -812 796 254 130 30 chr6 44219832 44220202 -145059352 + HAL1 LINE L1 1744 2150 -357 1090 178 199 0 chr6 44220210 44220441 -145059113 + AluJb SINE Alu 11 287 -25 258 32 0 0 chr6 44220451 44220482 -145059072 + (CA)n Simple_repeat Simple_repeat 1 31 0 312 27 0 0 chr6 44220523 44220560 -145058994 + (CA)n Simple_repeat Simple_repeat 1 37 0 339 236 162 68 chr6 44220626 44220660 -145058894 - MIR SINE MIR -21 241 212 2383 79 3 0 chr6 44220660 44220950 -145058604 - AluSx SINE Alu -21 291 1 339 236 162 68 chr6 44220950 44221063 -145058491 - MIR SINE MIR -50 212 80 408 251 169 26 chr6 44221106 44221337 -145058217 + HAL1 LINE L1 2244 2507 0 747 152 7 43 chr6 44221402 44221540 -145058014 + AluJb SINE Alu 1 133 -179 2093 134 0 6 chr6 44221622 44221936 -145057618 + AluSx SINE Alu 1 312 0 282 243 97 20 chr6 44222355 44222605 -145056949 + L1ME LINE L1 5265 5535 -629 1469 181 44 4 chr6 44222751 44223022 -145056532 + AluJb SINE Alu 1 282 -30 329 82 33 0 chr6 44223050 44223111 -145056443 + (CTAG)n Simple_repeat Simple_repeat 2 64 0 1019 153 0 0 chr6 44223136 44223293 -145056261 - AluJb SINE Alu -22 290 134 477 223 36 0 chr6 44223489 44223601 -145055953 + L1ME LINE L1 5546 5661 -460 22 0 0 0 chr6 44223618 44223640 -145055914 + AT_rich Low_complexity Low_complexity 1 22 0 2102 139 0 0 chr6 44223648 44223942 -145055612 + AluSx SINE Alu 1 294 -18 1851 178 7 0 chr6 44224290 44224593 -145054961 + AluJb SINE Alu 1 305 -7 2245 87 10 10 chr6 44224666 44224964 -145054590 - AluSx SINE Alu -14 298 1 875 99 0 57 chr6 44224972 44225113 -145054441 - L1PA15 LINE L1 -1 6164 6032 2292 53 60 27 chr6 44225189 44225490 -145054064 + AluY SINE Alu 1 311 0 1130 90 36 36 chr6 44225619 44225785 -145053769 + L1PA15 LINE L1 6000 6165 0 649 246 122 67 chr6 44225795 44226255 -145053299 + L1ME4a LINE L1 5414 5898 -223 1844 201 73 18 chr6 44226265 44226704 -145052850 + MLT1C LTR MaLR 5 467 0 525 290 110 10 chr6 44226712 44226912 -145052642 + MIR SINE MIR 23 242 -20 301 272 26 0 chr6 44226971 44227085 -145052469 + L1ME4a LINE L1 5984 6100 -21 1912 106 95 0 chr6 44227089 44227362 -145052192 - AluSx SINE Alu -13 299 1 30 27 0 0 chr6 44227362 44227399 -145052155 + AT_rich Low_complexity Low_complexity 1 37 0 555 126 39 19 chr6 44227437 44227540 -145052014 - MER50 LTR ERV1 -131 603 499 23 54 0 0 chr6 44227550 44227587 -145051967 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr6 44227672 44227718 -145051836 + AT_rich Low_complexity Low_complexity 1 46 0 868 128 7 28 chr6 44228107 44228248 -145051306 + FLAM_C SINE Alu 3 140 -3 2147 89 6 71 chr6 44228469 44228795 -145050759 - AluSg SINE Alu -5 305 1 1720 173 0 14 chr6 44228802 44228875 -145050679 - AluJo SINE Alu -26 286 214 2495 56 7 3 chr6 44228875 44229181 -145050373 - AluY SINE Alu -4 307 1 1720 173 0 14 chr6 44229181 44229396 -145050158 - AluJo SINE Alu -98 214 2 539 204 0 10 chr6 44229421 44229524 -145050030 + U13 snRNA snRNA 1 102 -2 727 207 0 0 chr6 44229554 44229670 -145049884 + AluJo SINE Alu 85 200 -112 313 279 0 0 chr6 44229745 44229831 -145049723 + L1MC4 LINE L1 6618 6703 -1339 1008 102 0 0 chr6 44230010 44230157 -145049397 + (TA)n Simple_repeat Simple_repeat 2 148 0 984 222 108 56 chr6 44230283 44230404 -145049150 + MER102b DNA MER1_type 1 114 -1314 1578 140 16 76 chr6 44230404 44230719 -145048835 + AluJo SINE Alu 1 296 -16 984 222 108 56 chr6 44230719 44230921 -145048633 + MER102b DNA MER1_type 114 341 0 226 260 41 41 chr6 44231119 44231192 -145048362 - L2 LINE L2 -3 3269 3197 23 0 0 0 chr6 44231933 44231956 -145047598 + AT_rich Low_complexity Low_complexity 1 23 0 2116 119 42 10 chr6 44231956 44232266 -145047288 - 7SLRNA srpRNA srpRNA 0 320 1 1499 173 25 85 chr6 44232484 44232842 -145046712 + L1M4 LINE L1 4945 5272 -874 2459 57 3 3 chr6 44232842 44233139 -145046415 + AluY SINE Alu 1 297 -14 1499 173 25 85 chr6 44233139 44233225 -145046329 + L1M4 LINE L1 5272 5362 -784 1803 32 55 0 chr6 44233310 44233527 -145046027 + AluY SINE Alu 1 229 -82 1939 190 18 87 chr6 44233862 44234037 -145045517 + L1MB5 LINE L1 5317 5502 -672 2143 108 3 10 chr6 44234037 44234332 -145045222 + AluSx SINE Alu 1 293 -19 191 61 30 0 chr6 44234332 44234365 -145045189 + (TA)n Simple_repeat Simple_repeat 2 35 0 1939 190 18 87 chr6 44234365 44234756 -145044798 + L1MB5 LINE L1 5501 5819 -355 1770 163 7 0 chr6 44234756 44235044 -145044510 + AluJb SINE Alu 11 300 -12 1939 190 18 87 chr6 44235044 44235110 -145044444 + L1MB5 LINE L1 5819 5888 -286 1994 124 0 0 chr6 44235154 44235419 -145044135 + AluSx SINE Alu 1 265 -47 931 112 0 0 chr6 44235476 44235601 -145043953 + AluSp/q SINE Alu 175 299 -14 1039 195 24 14 chr6 44235601 44235811 -145043743 + L1MB5 LINE L1 5931 6142 -32 960 195 18 12 chr6 44235811 44235975 -145043579 + FAM SINE Alu 1 165 -10 24 53 0 0 chr6 44235975 44236013 -145043541 + AT_rich Low_complexity Low_complexity 1 38 0 300 67 19 240 chr6 44236756 44236802 -145042752 + L1MB3 LINE L1 6101 6155 -28 2184 113 0 0 chr6 44236802 44237093 -145042461 + AluSx SINE Alu 1 291 -21 216 0 0 0 chr6 44237097 44237121 -145042433 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 300 67 19 240 chr6 44237121 44237173 -145042381 + L1MB3 LINE L1 6158 6181 -2 325 375 112 15 chr6 44237331 44237554 -145042000 + L3b LINE CR1 1279 1534 -49 2109 69 0 15 chr6 44237554 44237816 -145041738 - AluY SINE Alu -53 258 1 325 375 112 15 chr6 44237816 44237861 -145041693 + L3b LINE CR1 1534 1573 -10 2229 104 0 3 chr6 44238141 44238438 -145041116 + AluSx SINE Alu 1 296 -16 650 200 0 0 chr6 44238589 44238699 -145040855 - AluJ SINE Alu -9 303 194 291 260 27 14 chr6 44341897 44341970 -144937584 + L2 LINE L2 3198 3271 -1 416 313 0 4 chr6 44344987 44345113 -144934441 - MIR SINE MIR -62 146 33 247 319 11 33 chr6 44345141 44345232 -144934322 - L2 LINE L2 0 3272 3184 354 292 135 11 chr6 44345338 44345516 -144934038 - L2 LINE L2 -225 3047 2848 2128 106 14 3 chr6 44345543 44345836 -144933718 - AluSc SINE Alu -13 296 1 1365 227 95 0 chr6 44346129 44346504 -144933050 - L2 LINE L2 -317 2996 2598 575 312 77 5 chr6 44346659 44346880 -144932674 + MIR SINE MIR 13 249 -13 318 313 28 56 chr6 44346944 44347228 -144932326 - L2 LINE L2 -1005 2309 2034 289 258 225 20 chr6 44347270 44347421 -144932133 - MER5A DNA MER1_type -1 188 7 185 222 19 0 chr6 44347484 44347538 -144932016 + MIR SINE MIR 82 136 -72 586 255 25 13 chr6 44347969 44348126 -144931428 + MER5B DNA MER1_type 2 160 -18 841 122 0 0 chr6 44348560 44348675 -144930879 + FLAM_C SINE Alu 1 115 -18 1035 160 5 64 chr6 44348775 44348994 -144930560 - AluJ SINE Alu -103 209 4 283 295 107 9 chr6 44349002 44349114 -144930440 - L2 LINE L2 -11 3261 3139 439 301 37 15 chr6 44349122 44349258 -144930296 - MIR3 SINE MIR -54 154 16 710 225 104 99 chr6 44349444 44349483 -144930071 - MLT1J LTR MaLR -154 357 320 766 163 28 62 chr6 44349483 44349544 -144930010 + MER5B DNA MER1_type 3 65 -113 2252 88 0 0 chr6 44349544 44349838 -144929716 + AluSq SINE Alu 1 294 -19 766 163 28 62 chr6 44349838 44349954 -144929600 + MER5B DNA MER1_type 65 174 -4 710 225 104 99 chr6 44349954 44350269 -144929285 - MLT1J LTR MaLR -191 320 1 1613 164 38 3 chr6 44350958 44351251 -144928303 - AluSx SINE Alu -9 303 1 391 206 167 48 chr6 44352456 44352582 -144926972 - MIR SINE MIR -110 152 12 697 145 60 0 chr6 44352672 44352789 -144926765 - MER3 DNA MER1_type -81 128 5 723 243 78 14 chr6 44352794 44352898 -144926656 + MIR SINE MIR 40 136 -126 1699 146 17 20 chr6 44352898 44353192 -144926362 + AluJo SINE Alu 1 293 -19 723 243 78 14 chr6 44353192 44353295 -144926259 + MIR SINE MIR 136 259 -3 303 315 27 18 chr6 44353298 44353409 -144926145 - MIR3 SINE MIR -39 169 58 341 233 14 0 chr6 44353551 44353624 -144925930 + AluS SINE Alu 1 74 -229 337 224 144 24 chr6 44353702 44353827 -144925727 + L2 LINE L2 3174 3313 0 268 193 18 18 chr6 44353828 44353885 -144925669 - MIR SINE MIR -63 145 89 509 234 52 7 chr6 44354665 44354819 -144924735 - L1ME4a LINE L1 -1 6120 5960 1294 167 9 5 chr6 44355081 44355303 -144924251 - AluJo SINE Alu -5 307 85 797 127 0 0 chr6 44355314 44355424 -144924130 + FRAM SINE Alu 54 163 -13 233 200 0 0 chr6 44355424 44355464 -144924090 + MIR SINE MIR 153 192 -70 1404 234 50 8 chr6 44355486 44355849 -144923705 + LTR16C LTR ERVL 114 491 0 449 274 137 20 chr6 44355849 44356053 -144923501 - L2 LINE L2 -167 3146 2919 297 125 62 0 chr6 44356739 44356787 -144922767 - L2 LINE L2 0 3313 3263 317 177 97 0 chr6 44356892 44356954 -144922600 - MER63 DNA MER1_type -142 694 1 228 327 107 18 chr6 44357128 44357296 -144922258 - L2 LINE L2 -186 3086 2904 237 277 108 0 chr6 44358256 44358339 -144921215 - MIR SINE MIR -60 202 111 226 278 28 0 chr6 44358404 44358476 -144921078 - MIR SINE MIR -63 199 126 519 201 18 18 chr6 44358629 44358764 -144920790 + MIR SINE MIR 21 157 -62 345 274 20 0 chr6 44358767 44358869 -144920685 - MIR SINE MIR -1 261 158 2134 109 0 25 chr6 44358985 44359305 -144920249 + AluSx SINE Alu 1 312 0 416 312 62 47 chr6 44359719 44359995 -144919559 + L2 LINE L2 2853 3132 -140 941 256 29 20 chr6 44360031 44360277 -144919277 + MIR SINE MIR 15 262 0 902 230 24 28 chr6 44360401 44360649 -144918905 - LTR67 LTR ERVL 0 557 311 481 227 45 9 chr6 44360659 44360769 -144918785 - MER115 DNA AcHobo -7 686 573 1606 221 164 40 chr6 44360775 44361304 -144918250 - MLT1G1 LTR MaLR 0 595 1 2073 273 52 4 chr6 44361312 44361847 -144917707 - MER115 DNA AcHobo -131 562 2 298 270 40 0 chr6 44361849 44361923 -144917631 - LTR67 LTR ERVL -254 303 227 294 223 11 32 chr6 44362077 44362171 -144917383 - L1MEc LINE L1 -6270 126 35 1853 101 0 8 chr6 44362263 44362531 -144917023 - AluSq SINE Alu -9 304 39 534 338 67 12 chr6 44362578 44362818 -144916736 + MIR SINE MIR 7 259 -3 501 129 35 0 chr6 44363400 44363485 -144916069 - L1MA6 LINE L1 -66 6234 6147 1961 66 17 7 chr6 44363531 44363805 -144915749 + THE1C LTR MaLR 1 375 0 329 263 74 0 chr6 44369153 44369248 -144910306 - MIR3 SINE MIR -22 186 85 442 292 101 18 chr6 44369309 44369477 -144910077 - MIR3 SINE MIR -21 187 6 2491 50 0 0 chr6 44369764 44370066 -144909488 + AluY SINE Alu 1 302 -9 556 243 42 99 chr6 44370406 44370669 -144908885 + LTR16C LTR ERVL 237 484 -7 865 216 17 6 chr6 44370776 44370952 -144908602 + MER69 DNA AcHobo 4 181 -2345 3601 185 48 57 chr6 44371006 44372067 -144907487 + MER69 DNA AcHobo 1452 2503 -23 530 249 68 30 chr6 44372486 44372723 -144906831 - MER112 DNA MER1_type -6 254 9 2055 128 0 7 chr6 44372750 44373055 -144906499 + AluSx SINE Alu 1 303 -9 208 148 33 16 chr6 44373353 44373414 -144906140 + (ATATG)n Simple_repeat Simple_repeat 3 64 0 474 299 0 104 chr6 44374164 44374308 -144905246 - MIR SINE MIR -13 249 146 2091 190 23 58 chr6 44374308 44374828 -144904726 - MLT1D LTR MaLR -3 502 1 474 299 0 104 chr6 44374828 44374961 -144904593 - MIR SINE MIR -116 146 1 284 353 60 0 chr6 44375003 44375119 -144904435 - L2 LINE L2 -10 3262 3140 185 370 44 22 chr6 44375214 44375349 -144904205 - L2 LINE L2 -147 3125 2988 456 255 19 62 chr6 44375777 44375938 -144903616 - L2 LINE L2 0 3313 3160 27 0 0 0 chr6 44376453 44376480 -144903074 + AT_rich Low_complexity Low_complexity 1 27 0 455 327 75 16 chr6 44376557 44376920 -144902634 - L2 LINE L2 -218 3054 2661 9007 123 37 11 chr6 44377161 44378579 -144900975 + Tigger1 DNA MER2_type 963 2417 -1 1249 191 30 111 chr6 44379847 44380244 -144899310 + MLT1A1 LTR MaLR 1 365 0 645 187 278 75 chr6 44381488 44381654 -144897900 + LTR16A1 LTR ERVL 5 136 -321 315 0 0 0 chr6 44381654 44381689 -144897865 + (CA)n Simple_repeat Simple_repeat 2 36 0 645 187 278 75 chr6 44381689 44381896 -144897658 + LTR16A1 LTR ERVL 136 454 -3 576 0 0 0 chr6 44381896 44381960 -144897594 + (CA)n Simple_repeat Simple_repeat 2 65 0 3968 182 12 25 chr6 44382419 44383119 -144896435 + MER49 LTR ERV1 180 871 -52 2237 83 0 43 chr6 44383119 44383443 -144896111 + AluSg SINE Alu 1 310 0 3968 182 12 25 chr6 44383443 44383496 -144896058 + MER49 LTR ERV1 871 923 0 298 164 73 0 chr6 44383705 44383760 -144895794 + L2 LINE L2 3214 3272 0 265 272 26 53 chr6 44383980 44384094 -144895460 + MIR SINE MIR 110 220 -42 510 244 50 8 chr6 44384390 44384509 -144895045 + MIR3 SINE MIR 83 206 -2 1962 146 7 0 chr6 44385024 44385318 -144894236 + AluJo SINE Alu 1 296 -16 1288 237 27 145 chr6 44385366 44385891 -144893663 + L1ME3 LINE L1 5550 5975 -189 2239 104 0 0 chr6 44385891 44386199 -144893355 - AluSg SINE Alu -2 308 1 1288 237 27 145 chr6 44386199 44386370 -144893184 + L1ME3 LINE L1 5975 6164 0 332 266 87 43 chr6 44386849 44387056 -144892498 - L2 LINE L2 -38 3275 3060 704 234 84 66 chr6 44387061 44387288 -144892266 + MIR SINE MIR 20 250 -12 579 186 224 39 chr6 44387648 44387804 -144891750 + MIR SINE MIR 78 262 0 290 309 40 8 chr6 44387983 44388114 -144891440 - MIR3 SINE MIR -72 136 14 464 200 81 75 chr6 44388350 44388510 -144891044 - MER103 DNA DNA -2 164 4 1832 140 3 3 chr6 44389048 44389333 -144890221 + AluJb SINE Alu 17 301 -11 1508 142 68 21 chr6 44389342 44389623 -144889931 + AluJo SINE Alu 1 294 -18 486 265 108 0 chr6 44390151 44390317 -144889237 - MIR SINE MIR -3 259 76 216 329 14 0 chr6 44391185 44391255 -144888299 - L2 LINE L2 -16 3256 3186 2134 119 0 3 chr6 44391947 44392258 -144887296 + AluSx SINE Alu 2 311 -1 647 241 5 94 chr6 44392392 44392604 -144886950 + MIR SINE MIR 64 256 -6 225 228 37 79 chr6 44393103 44393187 -144886367 + MIR SINE MIR 72 151 -65 286 292 100 25 chr6 44393795 44393915 -144885639 - MIR SINE MIR -63 145 17 241 344 49 41 chr6 44394497 44394619 -144884935 + MER5B DNA MER1_type 19 141 -37 867 246 42 9 chr6 44394625 44394840 -144884714 - L1ME3 LINE L1 0 6162 5941 323 280 51 4 chr6 44394895 44395015 -144884539 - MIR SINE MIR -62 146 35 1977 146 0 0 chr6 44395117 44395412 -144884142 + AluJb SINE Alu 1 295 -17 2252 106 0 0 chr6 44395416 44395719 -144883835 + AluSc SINE Alu 3 305 -4 349 68 0 0 chr6 44397589 44397633 -144881921 - LTR23 LTR ERV1 -74 363 320 755 216 99 14 chr6 44398383 44398589 -144880965 + MIR SINE MIR 19 234 -28 487 227 108 62 chr6 44399275 44399451 -144880103 - L2 LINE L2 0 3313 3130 228 281 6 79 chr6 44399572 44399736 -144879818 - ORSL DNA AcHobo 0 275 124 1542 221 105 20 chr6 44399946 44400384 -144879170 - MLT1J LTR MaLR -31 480 6 844 235 146 13 chr6 44400637 44400939 -144878615 - L2 LINE L2 -535 2779 2438 439 353 23 23 chr6 44401653 44401914 -144877640 - L1ME3 LINE L1 -304 5817 5557 2230 100 3 6 chr6 44402239 44402550 -144877004 - AluSx SINE Alu -2 310 1 1917 215 23 0 chr6 44402552 44402984 -144876570 + Charlie4a DNA MER1_type 67 508 0 383 291 35 0 chr6 44403616 44403757 -144875797 + (GGGTG)n Simple_repeat Simple_repeat 3 148 0 2156 118 3 0 chr6 44404231 44404537 -144875017 + AluSq SINE Alu 1 307 -6 200 285 244 8 chr6 44404608 44404731 -144874823 - MIR SINE MIR -34 228 77 252 330 132 0 chr6 44404904 44405010 -144874544 - L2 LINE L2 -26 3287 3168 394 195 124 44 chr6 44405368 44405481 -144874073 + L1ME1 LINE L1 6037 6158 -6 230 191 0 0 chr6 44406655 44406697 -144872857 + MIR SINE MIR 103 144 -118 411 275 192 0 chr6 44406765 44406932 -144872622 - MIR SINE MIR -62 200 2 471 78 0 0 chr6 44407200 44407264 -144872290 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 121 30 0 chr6 44407463 44407496 -144872058 + GA-rich Low_complexity Low_complexity 2 35 0 253 174 22 0 chr6 44407883 44407929 -144871625 + L2 LINE L2 3192 3238 -75 1085 257 134 21 chr6 44407930 44408537 -144871017 - L2 LINE L2 0 3313 2657 338 257 0 0 chr6 44408537 44408611 -144870943 + L2 LINE L2 3195 3268 -4 285 350 0 42 chr6 44408733 44408853 -144870701 - MIR SINE MIR -42 220 106 280 277 71 85 chr6 44409373 44409514 -144870040 - L2 LINE L2 -1 3271 3133 386 198 0 12 chr6 44409729 44409810 -144869744 - AluJ/FRAM SINE Alu 0 302 223 975 223 64 5 chr6 44410072 44410292 -144869262 - MIR SINE MIR -28 234 2 203 260 0 104 chr6 44411885 44411981 -144867573 - L3 LINE CR1 -56 1521 1436 238 308 23 19 chr6 44412061 44412256 -144867298 + CT-rich Low_complexity Low_complexity 1 195 0 216 346 6 34 chr6 44412302 44412481 -144867073 + CT-rich Low_complexity Low_complexity 1 174 0 768 219 110 26 chr6 44413127 44413355 -144866199 + MIR SINE MIR 16 262 0 204 250 13 79 chr6 44413354 44413430 -144866124 - MIR SINE MIR -74 188 118 * 497 240 53 20 chr6 44414618 44414768 -144864786 + MLT1G LTR MaLR 428 582 -8 394 253 40 0 chr6 44415380 44415479 -144864075 + MER99 DNA DNA 1 103 -725 1690 162 18 0 chr6 44415507 44415820 -144863734 - AluSx SINE Alu 0 318 1 1435 212 14 3 chr6 44415871 44416177 -144863377 + AluJo SINE Alu 1 309 0 24 0 0 0 chr6 44416465 44416489 -144863065 + AT_rich Low_complexity Low_complexity 1 24 0 1708 168 3 0 chr6 44416509 44416807 -144862747 - AluJb SINE Alu -13 299 1 1102 146 0 0 chr6 44416867 44417038 -144862516 - FRAM SINE Alu -8 168 1 3022 178 22 11 chr6 44417359 44417903 -144861651 + MER99 DNA DNA 214 763 -65 222 326 108 8 chr6 44418132 44418261 -144861293 + L2 LINE L2 2124 2265 -1049 357 133 17 0 chr6 44418442 44418502 -144861052 + MLT1F1 LTR MaLR 507 567 0 876 254 50 42 chr6 44419131 44419206 -144860348 - L1MEd LINE L1 -4863 1256 1183 1454 151 93 31 chr6 44419206 44419497 -144860057 - AluJo SINE Alu -3 309 1 876 254 50 42 chr6 44419497 44419779 -144859775 - L1MEd LINE L1 -4936 1183 896 23 0 0 0 chr6 44419847 44419870 -144859684 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 44419961 44419986 -144859568 + AT_rich Low_complexity Low_complexity 1 25 0 326 296 139 9 chr6 44420620 44420735 -144858819 + L2 LINE L2 3179 3308 -5 494 323 62 55 chr6 44420751 44421054 -144858500 - L2 LINE L2 -341 2973 2665 1802 138 3 26 chr6 44421054 44421359 -144858195 + AluJb SINE Alu 1 298 -14 494 323 62 55 chr6 44421359 44421473 -144858081 - L2 LINE L2 -649 2665 2553 1328 165 6 92 chr6 44421516 44421832 -144857722 + AluJo SINE Alu 10 298 -14 201 365 52 0 chr6 44421852 44421948 -144857606 - L2 LINE L2 -817 2497 2397 423 206 9 37 chr6 44423475 44423582 -144855972 - L1ME1 LINE L1 -3 6232 6129 2083 136 3 0 chr6 44423855 44424164 -144855390 - AluSq SINE Alu -1 312 3 22 0 0 0 chr6 44425143 44425165 -144854389 + AT_rich Low_complexity Low_complexity 1 22 0 297 337 129 25 chr6 44426003 44426166 -144853388 - MER5A DNA MER1_type -3 186 7 23 0 0 0 chr6 44426265 44426288 -144853266 + AT_rich Low_complexity Low_complexity 1 23 0 345 314 68 40 chr6 44426527 44426775 -144852779 + L3 LINE CR1 1171 1425 -152 756 248 0 34 chr6 44427663 44427869 -144851685 + L2 LINE L2 3100 3298 -15 509 258 48 0 chr6 44428517 44428641 -144850913 + MIR SINE MIR 1 130 -132 1065 93 214 6 chr6 44429237 44429419 -144850135 - MER30 DNA MER1_type 0 230 11 2256 102 39 36 chr6 44429507 44429870 -144849684 + THE1B LTR MaLR 1 364 0 2126 115 3 3 chr6 44430746 44431058 -144848496 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 44431078 44431100 -144848454 + AT_rich Low_complexity Low_complexity 1 22 0 260 380 91 0 chr6 44431804 44431925 -144847629 - L2 LINE L2 0 3313 3182 227 357 169 22 chr6 44433904 44434495 -144845059 + L2 LINE L2 1726 2403 -911 2016 83 0 67 chr6 44435273 44435573 -144843981 + AluSg SINE Alu 1 280 -30 286 294 161 7 chr6 44435608 44435751 -144843803 - HAL1 LINE L1 -1901 606 442 22 0 0 0 chr6 44435814 44435836 -144843718 + AT_rich Low_complexity Low_complexity 1 22 0 2114 160 6 6 chr6 44435858 44436202 -144843352 + MER2 DNA MER2_type 1 344 0 2457 50 3 0 chr6 44436466 44436766 -144842788 - AluY SINE Alu -10 301 1 772 283 92 36 chr6 44436767 44437772 -144841782 - L1ME1 LINE L1 -221 6018 4929 234 273 26 0 chr6 44437821 44437898 -144841656 + HAL1 LINE L1 1731 1809 -698 385 327 124 56 chr6 44437899 44438595 -144840959 + L1M4 LINE L1 1858 4948 -466 698 258 109 122 chr6 44438595 44438673 -144840881 - L1ME1 LINE L1 -5355 1041 963 180 0 0 0 chr6 44438673 44438693 -144840861 + (TATG)n Simple_repeat Simple_repeat 1 20 0 698 258 109 122 chr6 44438693 44438713 -144840841 - L1ME1 LINE L1 -5433 963 944 1638 159 7 34 chr6 44438713 44439009 -144840545 + AluJb SINE Alu 1 288 -24 698 258 109 122 chr6 44439009 44439875 -144839679 - L1ME1 LINE L1 -5452 944 89 820 188 41 56 chr6 44440068 44440265 -144839289 + MER20 DNA MER1_type 25 218 -1 1234 214 55 29 chr6 44440533 44440842 -144838712 - MER21B LTR ERV1 -60 803 487 373 186 119 147 chr6 44440859 44441036 -144838518 - MER21B LTR ERV1 -691 172 1 2382 74 3 13 chr6 44441435 44441747 -144837807 - AluY SINE Alu -2 309 1 2001 145 167 16 chr6 44441749 44442121 -144837433 - MSTA LTR MaLR 0 428 1 260 291 81 20 chr6 44442359 44442507 -144837047 - MIR3 SINE MIR -5 203 47 21 57 0 0 chr6 44444109 44444144 -144835410 + AT_rich Low_complexity Low_complexity 1 35 0 294 29 0 0 chr6 44444265 44444300 -144835254 + (CA)n Simple_repeat Simple_repeat 1 35 0 630 316 78 19 chr6 44444410 44444926 -144834628 - L1ME LINE L1 -360 5802 5257 22 70 0 0 chr6 44444968 44445011 -144834543 + AT_rich Low_complexity Low_complexity 1 43 0 660 243 0 0 chr6 44445020 44445156 -144834398 - FLAM_C SINE Alu -6 137 2 226 140 0 0 chr6 44445164 44445214 -144834340 - LTR66 LTR ERVL -166 444 395 230 245 0 43 chr6 44445237 44445331 -144834223 - L1MC4 LINE L1 -1339 6703 6614 * 242 289 0 0 chr6 44445257 44445347 -144834207 + L1MC4 LINE L1 6614 6703 -1339 189 171 0 0 chr6 44445347 44445382 -144834172 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 252 275 12 0 chr6 44445402 44445482 -144834072 + (TA)n Simple_repeat Simple_repeat 1 81 0 287 283 143 39 chr6 44445493 44445801 -144833753 - L1ME LINE L1 -1015 5131 4792 24 67 0 0 chr6 44445904 44445949 -144833605 + AT_rich Low_complexity Low_complexity 1 45 0 257 204 10 107 chr6 44446905 44447008 -144832546 - MER94 DNA DNA -39 95 3 205 355 29 58 chr6 44447326 44447464 -144832090 - L2 LINE L2 -5 3267 3134 22 35 0 0 chr6 44447980 44448009 -144831545 + AT_rich Low_complexity Low_complexity 1 29 0 838 166 7 7 chr6 44448544 44448683 -144830871 - AluSx SINE Alu -153 159 21 2479 61 0 0 chr6 44448825 44449120 -144830434 + AluY SINE Alu 1 295 -16 2540 78 0 0 chr6 44450135 44450442 -144829112 - AluSx SINE Alu -5 307 1 207 299 75 28 chr6 44450643 44450750 -144828804 + MIR SINE MIR 151 262 0 22 70 0 0 chr6 44450809 44450852 -144828702 + AT_rich Low_complexity Low_complexity 1 43 0 727 222 81 36 chr6 44451253 44451653 -144827901 - LTR16A1 LTR ERVL 0 457 8 1132 201 34 0 chr6 44452754 44452963 -144826591 - MER20 DNA MER1_type -3 216 1 263 335 190 0 chr6 44453012 44453170 -144826384 - MIR SINE MIR -48 214 27 * 493 222 75 71 chr6 44453156 44453368 -144826186 + MIR SINE MIR 29 241 -21 2493 60 0 25 chr6 44456629 44456944 -144822610 - AluY SINE Alu -4 307 1 540 205 83 51 chr6 44457736 44457892 -144821662 + MIR SINE MIR 87 247 -15 217 299 153 29 chr6 44458006 44458143 -144821411 - MIR3 SINE MIR -11 197 44 22 35 0 0 chr6 44459565 44459594 -144819960 + AT_rich Low_complexity Low_complexity 1 29 0 808 279 95 9 chr6 44461543 44461880 -144817674 + L2 LINE L2 2224 2589 -725 530 229 8 8 chr6 44461890 44462012 -144817542 + L2 LINE L2 3192 3313 0 339 294 124 26 chr6 44462142 44462260 -144817294 - MIR SINE MIR 0 262 157 2273 122 0 0 chr6 44462260 44462572 -144816982 + AluSx SINE Alu 1 312 0 339 294 124 26 chr6 44462572 44462647 -144816907 - MIR SINE MIR -105 157 50 241 231 0 0 chr6 44462869 44462916 -144816638 + T-rich Low_complexity Low_complexity 1 50 -15 3113 21 0 0 chr6 44462916 44463249 -144816305 - SVA Other Other 0 1386 1054 241 231 0 0 chr6 44463249 44463266 -144816288 + T-rich Low_complexity Low_complexity 49 65 0 323 309 146 0 chr6 44465856 44465966 -144813588 - MER91A DNA MER1_type -70 126 1 189 0 0 0 chr6 44467903 44467924 -144811630 + (T)n Simple_repeat Simple_repeat 1 21 0 1928 139 0 33 chr6 44469095 44469397 -144810157 - AluJb SINE Alu -20 292 1 2111 165 40 3 chr6 44469860 44470212 -144809342 - MER47A DNA MER2_type -1 365 1 434 202 176 0 chr6 44470228 44470347 -144809207 - L2 LINE L2 -5 3308 3169 238 315 34 0 chr6 44471958 44472047 -144807507 + MIR3 SINE MIR 108 199 -9 209 81 0 27 chr6 44472646 44472683 -144806871 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1903 109 53 0 chr6 44472683 44472949 -144806605 - AluJb SINE Alu -32 280 1 2299 106 0 0 chr6 44473563 44473865 -144805689 + AluSq SINE Alu 1 302 -11 346 304 121 29 chr6 44475548 44475755 -144803799 - MIR SINE MIR 0 262 37 2287 86 7 0 chr6 44477521 44477823 -144801731 + AluSq SINE Alu 1 304 -9 354 167 13 103 chr6 44577947 44578025 -144701529 - AluJ/FLAM SINE Alu -244 58 1 284 274 0 0 chr6 44578570 44578643 -144700911 - MIR SINE MIR -66 196 124 2318 81 0 3 chr6 44578669 44578978 -144700576 + AluY SINE Alu 1 308 -3 1799 130 51 0 chr6 44579293 44579586 -144699968 - AluSg SINE Alu -1 309 2 1426 171 3 72 chr6 44579747 44579899 -144699655 + AluSq SINE Alu 3 125 -188 1996 126 0 23 chr6 44579899 44580209 -144699345 + AluSx SINE Alu 1 303 -9 1426 171 3 72 chr6 44580209 44580361 -144699193 + AluSq SINE Alu 125 286 -27 189 94 0 0 chr6 44580361 44580393 -144699161 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1565 77 39 0 chr6 44580455 44580662 -144698892 - AluSc SINE Alu -94 215 1 1588 164 38 0 chr6 44581549 44581669 -144697885 + AluJb SINE Alu 1 115 -197 249 57 0 0 chr6 44581669 44581704 -144697850 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1588 164 38 0 chr6 44581704 44581876 -144697678 + AluJb SINE Alu 115 304 -8 389 230 146 30 chr6 44581877 44582042 -144697512 - MIR SINE MIR -2 260 77 492 232 179 41 chr6 44582042 44582081 -144697473 + MLT1J2 LTR MaLR 1 33 -413 2129 101 0 7 chr6 44582081 44582392 -144697162 - AluSq SINE Alu 0 309 1 492 232 179 41 chr6 44582392 44582651 -144696903 + MLT1J2 LTR MaLR 33 327 -119 1432 132 9 0 chr6 44582666 44582879 -144696675 + AluJb SINE Alu 85 299 -13 428 218 3 24 chr6 44582890 44583003 -144696551 + MLT1I LTR MaLR 319 409 0 389 310 38 39 chr6 44583096 44583292 -144696262 + MIR SINE MIR 25 216 -46 273 231 380 0 chr6 44583444 44583565 -144695989 - L1MC4 LINE L1 -5 8037 7871 2069 113 3 0 chr6 44583567 44583859 -144695695 + AluSq SINE Alu 1 293 -20 793 244 0 0 chr6 44583891 44584047 -144695507 + MLT1D LTR MaLR 350 505 0 1761 216 146 35 chr6 44584049 44584235 -144695319 - L1MC4 LINE L1 -309 7733 7569 1191 187 0 136 chr6 44584235 44584567 -144694987 + AluY SINE Alu 1 287 -14 1761 216 146 35 chr6 44584567 44584864 -144694690 - L1MC4 LINE L1 -473 7569 7306 1957 115 34 3 chr6 44584864 44585159 -144694395 - AluSx SINE Alu -8 304 1 1761 216 146 35 chr6 44585159 44585333 -144694221 - L1MC4 LINE L1 -736 7306 7002 2029 98 3 14 chr6 44585333 44585646 -144693908 - AluSc SINE Alu 0 310 1 1211 214 3 50 chr6 44585649 44585952 -144693602 - AluJo SINE Alu -17 295 7 2114 91 3 58 chr6 44585962 44586292 -144693262 - AluSx SINE Alu 0 312 1 1841 222 113 7 chr6 44586296 44586738 -144692816 - L1MC4a LINE L1 -880 6928 6440 359 83 0 0 chr6 44586830 44586878 -144692676 + MER41D LTR ERV1 1 48 -509 379 71 36 0 chr6 44586878 44586934 -144692620 + L1PA3 LINE L1 6095 6152 -3 2054 82 11 0 chr6 44586967 44587262 -144692292 + AluSg SINE Alu 11 308 0 2209 86 3 3 chr6 44587262 44587566 -144691988 + AluSq SINE Alu 1 304 -9 888 152 8 0 chr6 44587571 44587703 -144691851 + FLAM_C SINE Alu 1 133 0 3484 174 22 13 chr6 44587722 44588348 -144691206 + LTR27 LTR ERV1 2 633 -3 2070 115 0 3 chr6 44588349 44588645 -144690909 + AluSx SINE Alu 1 295 -17 864 201 0 0 chr6 44588654 44588808 -144690746 + AluJb SINE Alu 145 298 -14 2246 92 13 0 chr6 44588814 44589120 -144690434 + AluSq SINE Alu 2 311 -2 609 244 45 0 chr6 44589133 44589289 -144690265 + MER41D LTR ERV1 395 557 0 1535 184 13 26 chr6 44589289 44589599 -144689955 - AluJo SINE Alu -1 311 6 1975 106 0 45 chr6 44589606 44589780 -144689774 - AluSq SINE Alu -15 298 143 2253 87 0 3 chr6 44589780 44590078 -144689476 - AluSg SINE Alu -13 297 1 1975 106 0 45 chr6 44590078 44590215 -144689339 - AluSq SINE Alu -170 143 1 439 259 0 67 chr6 44590219 44590354 -144689200 - L1ME2 LINE L1 -37 6127 6002 1994 95 20 14 chr6 44590397 44590692 -144688862 - AluSx SINE Alu -15 297 1 448 200 58 26 chr6 44590694 44590849 -144688705 - L1M3 LINE L1 -689 5491 5332 779 160 0 33 chr6 44590849 44591113 -144688441 - AluJb SINE Alu -1 311 2 415 160 235 71 chr6 44591113 44591351 -144688203 - L1M3 LINE L1 -804 5342 5066 2181 112 0 0 chr6 44591872 44592176 -144687378 - AluSx SINE Alu -8 304 1 1348 146 0 107 chr6 44592418 44592618 -144686936 - AluJo SINE Alu -10 302 145 1726 172 10 3 chr6 44592618 44592914 -144686640 + AluSx SINE Alu 1 298 -14 1348 146 0 107 chr6 44592914 44593021 -144686533 - AluJo SINE Alu -167 145 28 21 0 0 0 chr6 44593040 44593061 -144686493 + AT_rich Low_complexity Low_complexity 1 21 0 1792 271 64 17 chr6 44593064 44593703 -144685851 - L1MC4a LINE L1 -1876 5932 5264 2407 70 0 0 chr6 44593732 44594033 -144685521 + AluY SINE Alu 1 301 -10 2180 94 7 0 chr6 44594047 44594346 -144685208 + AluSp SINE Alu 1 301 -12 487 125 33 150 chr6 44594346 44594428 -144685126 + HY1 scRNA scRNA 1 66 -46 774 154 31 15 chr6 44594428 44594558 -144684996 - FLAM_C SINE Alu 0 133 2 487 125 33 150 chr6 44594558 44594595 -144684959 + HY1 scRNA scRNA 66 106 -6 856 151 0 108 chr6 44594641 44594667 -144684887 + AluJo SINE Alu 122 149 -163 1729 151 3 22 chr6 44594667 44594984 -144684570 + AluJo SINE Alu 1 311 -1 856 151 0 108 chr6 44594984 44595142 -144684412 + AluJo SINE Alu 149 286 -26 829 129 23 23 chr6 44595814 44595946 -144683608 + FLAM_C SINE Alu 2 133 0 383 307 190 0 chr6 44596151 44596356 -144683198 + MIR SINE MIR 13 256 -6 183 139 0 0 chr6 44596420 44596456 -144683098 + (TG)n Simple_repeat Simple_repeat 2 37 0 1647 163 30 3 chr6 44596636 44596931 -144682623 + AluJb SINE Alu 1 303 -9 1054 231 4 48 chr6 44597994 44598052 -144681502 - MIR SINE MIR 0 262 203 2389 75 0 0 chr6 44598052 44598358 -144681196 - AluY SINE Alu -5 306 1 1054 231 4 48 chr6 44598358 44598567 -144680987 - MIR SINE MIR -59 203 7 259 381 108 7 chr6 44598611 44598750 -144680804 + L2 LINE L2 3114 3266 -6 391 272 59 64 chr6 44599206 44599408 -144680146 + MLT1K LTR MaLR 378 578 -10 563 277 71 92 chr6 44599447 44599815 -144679739 + L1MC4a LINE L1 4688 5047 -1099 1585 173 11 18 chr6 44599817 44600100 -144679454 + AluJo SINE Alu 1 281 -31 239 79 26 0 chr6 44600145 44600183 -144679371 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 439 334 64 42 chr6 44600183 44600206 -144679348 + L1MC4a LINE L1 5023 5044 -1102 2182 116 0 0 chr6 44600206 44600508 -144679046 - AluSx SINE Alu -10 302 1 439 334 64 42 chr6 44600508 44600777 -144678777 + L1MC4a LINE L1 5044 5327 -819 2188 109 0 6 chr6 44600777 44601090 -144678464 + AluY SINE Alu 1 311 0 439 334 64 42 chr6 44601090 44601155 -144678399 + L1MC4a LINE L1 5327 5389 -757 1709 138 0 4 chr6 44601166 44601426 -144678128 + AluSx SINE Alu 27 285 -27 253 81 0 54 chr6 44601426 44601463 -144678091 + Alu SINE Alu 251 285 -17 277 136 0 0 chr6 44601463 44601507 -144678047 + Alu SINE Alu 249 292 -8 1333 165 0 0 chr6 44601537 44601749 -144677805 - AluJb SINE Alu -14 298 87 249 196 27 98 chr6 44601754 44601822 -144677732 + L1MC4a LINE L1 5367 5426 -2382 1853 123 28 3 chr6 44601822 44602107 -144677447 + AluSx SINE Alu 1 292 -20 249 196 27 98 chr6 44602107 44602150 -144677404 + L1MC4a LINE L1 5426 5470 -2338 675 254 70 60 chr6 44602162 44602251 -144677303 + L1MC4a LINE L1 5555 5642 -2166 2060 110 3 52 chr6 44602251 44602579 -144676975 - AluSx SINE Alu 0 312 1 2087 126 0 0 chr6 44602583 44602892 -144676662 - AluSx SINE Alu -3 309 1 675 254 70 60 chr6 44602892 44603096 -144676458 + L1MC4a LINE L1 5644 5856 -1952 2171 115 0 0 chr6 44603132 44603436 -144676118 + AluSx SINE Alu 1 304 -8 2314 90 3 0 chr6 44603438 44603748 -144675806 + AluY SINE Alu 1 311 0 189 107 0 0 chr6 44604172 44604200 -144675354 + (TA)n Simple_repeat Simple_repeat 2 29 0 667 229 82 69 chr6 44604200 44604251 -144675303 - LTR33A LTR ERVL -7 516 467 2532 36 0 3 chr6 44604251 44604554 -144675000 + AluY SINE Alu 1 302 -9 667 229 82 69 chr6 44604554 44604747 -144674807 - LTR33A LTR ERVL -56 467 269 2120 107 0 7 chr6 44604966 44605265 -144674289 - AluSc SINE Alu -12 297 1 936 178 0 25 chr6 44605265 44605428 -144674126 - FRAM SINE Alu -7 159 1 2031 131 0 6 chr6 44605544 44605858 -144673696 + AluSx SINE Alu 1 312 0 329 296 184 28 chr6 44605952 44606191 -144673363 - L1MC4 LINE L1 -328 7714 7333 27 0 0 0 chr6 44606199 44606226 -144673328 + AT_rich Low_complexity Low_complexity 1 27 0 1262 164 95 8 chr6 44606280 44606542 -144673012 + AluJb SINE Alu 16 300 -12 367 224 224 15 chr6 44606700 44606834 -144672720 + MIR SINE MIR 101 262 0 2317 68 0 10 chr6 44607150 44607461 -144672093 + AluY SINE Alu 2 309 -2 551 270 0 61 chr6 44607529 44607569 -144671985 + L2 LINE L2 3130 3171 -142 1551 152 7 56 chr6 44607569 44607725 -144671829 - AluJb SINE Alu -13 289 154 2259 70 0 0 chr6 44607725 44608024 -144671530 - AluSx SINE Alu -13 299 1 1551 152 7 56 chr6 44608024 44608170 -144671384 - AluJb SINE Alu -148 154 2 551 270 0 61 chr6 44608170 44608325 -144671229 + L2 LINE L2 3171 3313 0 588 213 87 0 chr6 44609180 44609307 -144670247 + AluJb SINE Alu 136 273 -39 2218 82 3 0 chr6 44609360 44609654 -144669900 - AluSp SINE Alu -18 295 1 3215 163 71 122 chr6 44609672 44609822 -144669732 - Charlie1a DNA MER1_type -1867 894 738 2053 30 45 22 chr6 44609822 44610089 -144669465 + AluY SINE Alu 39 311 0 3215 163 71 122 chr6 44610089 44610350 -144669204 - Charlie1a DNA MER1_type -2023 738 465 561 157 0 0 chr6 44610350 44610433 -144669121 + AluJ/FLAM SINE Alu 2 84 -228 3215 163 71 122 chr6 44610433 44610878 -144668676 - Charlie1a DNA MER1_type -2296 465 3 1351 153 141 0 chr6 44611151 44611413 -144668141 - AluSg SINE Alu -11 299 1 2040 112 10 19 chr6 44611806 44612118 -144667436 + AluSg SINE Alu 1 309 -1 2056 121 7 0 chr6 44612180 44612477 -144667077 - AluSx SINE Alu -13 299 1 2137 85 37 0 chr6 44612553 44612848 -144666706 - AluY SINE Alu -5 306 1 757 212 0 0 chr6 44612856 44612993 -144666561 - FRAM SINE Alu -16 160 24 372 231 75 106 chr6 44612996 44613060 -144666494 - MER58A DNA MER1_type -186 155 91 1646 179 0 7 chr6 44613060 44613356 -144666198 + AluJb SINE Alu 2 295 -17 372 231 75 106 chr6 44613356 44613451 -144666103 - MER58A DNA MER1_type -250 91 1 2063 113 10 0 chr6 44614439 44614739 -144664815 + AluSx SINE Alu 1 303 -9 2053 76 25 0 chr6 44614743 44615052 -144664502 - AluSx SINE Alu 0 316 1 27 29 0 0 chr6 44615052 44615086 -144664468 + AT_rich Low_complexity Low_complexity 1 34 0 1914 112 0 53 chr6 44615097 44615235 -144664319 + AluSx SINE Alu 3 118 -194 2357 71 13 0 chr6 44615235 44615543 -144664011 + AluSp SINE Alu 1 312 -1 1914 112 0 53 chr6 44615543 44615707 -144663847 + AluSx SINE Alu 118 289 -23 26 0 0 0 chr6 44615707 44615733 -144663821 + AT_rich Low_complexity Low_complexity 1 26 0 2091 103 3 0 chr6 44615777 44616068 -144663486 + AluSx SINE Alu 1 292 -20 1013 206 38 10 chr6 44616159 44616368 -144663186 - MER20 DNA MER1_type -4 215 1 280 119 169 0 chr6 44616368 44616427 -144663127 - L1MC5 LINE L1 -139 7822 7754 1872 125 3 24 chr6 44616443 44616780 -144662774 - AluSx SINE Alu 0 331 1 1659 174 3 10 chr6 44616784 44617078 -144662476 - AluJo SINE Alu -20 292 1 1988 133 7 10 chr6 44617228 44617536 -144662018 - AluJo SINE Alu -5 307 1 1450 196 32 0 chr6 44618376 44618657 -144660897 + AluJb SINE Alu 1 290 -22 2186 121 0 6 chr6 44619507 44619821 -144659733 + AluSx SINE Alu 1 312 0 320 261 50 68 chr6 44620196 44620265 -144659289 - L1ME LINE L1 -297 5824 5755 1649 94 140 0 chr6 44620265 44620530 -144659024 - AluSx SINE Alu 0 302 1 320 261 50 68 chr6 44620530 44620621 -144658933 - L1ME LINE L1 -366 5755 5667 2266 97 3 0 chr6 44620979 44621279 -144658275 + AluSp SINE Alu 2 302 -11 498 154 55 0 chr6 44621502 44621593 -144657961 - L1MC3 LINE L1 -612 7173 7078 2187 96 0 10 chr6 44622084 44622387 -144657167 + AluSc SINE Alu 1 300 -9 21 0 0 0 chr6 44622649 44622670 -144656884 + AT_rich Low_complexity Low_complexity 1 21 0 410 303 8 0 chr6 44622942 44623061 -144656493 - Charlie8 DNA MER1_type -2154 263 144 573 147 45 106 chr6 44623090 44623288 -144656266 + L1MC5 LINE L1 7740 7925 -36 249 194 161 0 chr6 44623289 44623351 -144656203 - Charlie8 DNA MER1_type -2273 144 73 1933 105 36 4 chr6 44625279 44625604 -144653950 + AluSx SINE Alu 3 336 0 1704 172 16 7 chr6 44625610 44625918 -144653636 + AluJb SINE Alu 1 311 -1 653 212 0 0 chr6 44625934 44626052 -144653502 - FLAM_C SINE Alu -24 119 2 846 205 0 0 chr6 44626110 44626276 -144653278 - FRAM SINE Alu -11 165 1 2144 111 0 7 chr6 44626405 44626711 -144652843 + AluSg SINE Alu 1 304 -6 955 209 75 98 chr6 44626718 44627077 -144652477 + L1MC4a LINE L1 5521 5871 -1937 2465 47 3 0 chr6 44627119 44627416 -144652138 - AluY SINE Alu -13 298 1 2299 82 0 0 chr6 44627610 44627904 -144651650 + AluSc SINE Alu 1 294 -15 267 255 163 20 chr6 44627996 44628094 -144651460 - MER5A DNA MER1_type -25 164 53 1398 140 42 39 chr6 44628133 44628419 -144651135 + AluJb SINE Alu 1 287 -25 2062 106 0 0 chr6 44628745 44629051 -144650503 - AluSg SINE Alu 0 306 1 2416 60 0 0 chr6 44629145 44629446 -144650108 + AluY SINE Alu 1 301 -10 1246 117 66 5 chr6 44629683 44629879 -144649675 + AluJb SINE Alu 86 293 -19 2149 79 0 16 chr6 44630215 44630518 -144649036 - AluSq SINE Alu -15 298 1 2156 100 3 0 chr6 44630909 44631208 -144648346 + AluSx SINE Alu 1 300 -12 785 107 24 83 chr6 44631208 44631247 -144648307 + L1MDa LINE L1 2240 2280 -4260 2224 43 46 0 chr6 44631247 44631529 -144648025 + AluY SINE Alu 1 295 -16 785 107 24 83 chr6 44631529 44631658 -144647896 + L1MDa LINE L1 2280 2398 -4142 27 0 0 0 chr6 44631660 44631687 -144647867 + AT_rich Low_complexity Low_complexity 1 27 0 2210 94 0 3 chr6 44631687 44631996 -144647558 - AluY SINE Alu 0 311 4 2061 75 7 0 chr6 44632001 44632174 -144647380 - AluY SINE Alu 0 307 130 180 0 0 0 chr6 44632174 44632194 -144647360 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2061 75 7 0 chr6 44632194 44632325 -144647229 - AluY SINE Alu -177 130 1 2550 171 74 32 chr6 44632337 44632775 -144646779 + L1M4 LINE L1 4730 5199 -977 2137 128 0 6 chr6 44632775 44633088 -144646466 - AluSx SINE Alu -1 311 1 2550 171 74 32 chr6 44633088 44633334 -144646220 + L1M4 LINE L1 5199 5433 -743 452 270 35 0 chr6 44633325 44633440 -144646114 + L1MD1 LINE L1 3728 3846 -2300 * 2207 93 3 0 chr6 44633443 44633734 -144645820 + AluSp SINE Alu 1 292 -21 1039 69 0 0 chr6 44633739 44633870 -144645684 + AluSp SINE Alu 2 132 -181 1583 104 0 0 chr6 44633873 44634085 -144645469 + AluSq SINE Alu 85 296 -17 1258 204 106 0 chr6 44634096 44634453 -144645101 + L1MD1 LINE L1 3850 4244 -1902 744 217 0 32 chr6 44634456 44634613 -144644941 + AluJb SINE Alu 146 297 -15 1396 208 113 40 chr6 44634668 44635023 -144644531 + L1MD1 LINE L1 4266 4594 -1552 1497 148 84 47 chr6 44635023 44635321 -144644233 + AluSq SINE Alu 1 309 -4 1396 208 113 40 chr6 44635321 44635376 -144644178 + L1MD1 LINE L1 4594 4644 -1502 1258 178 106 0 chr6 44635376 44635651 -144643903 + AluJo SINE Alu 1 304 -8 1396 208 113 40 chr6 44635651 44635787 -144643767 + L1MD1 LINE L1 4644 4853 -1293 1852 133 4 0 chr6 44635788 44636066 -144643488 + AluSx SINE Alu 1 279 -33 479 200 0 11 chr6 44636069 44636159 -144643395 + AluJo SINE Alu 123 211 -101 2424 53 3 0 chr6 44636227 44636526 -144643028 + AluSp SINE Alu 11 310 -3 859 131 0 15 chr6 44636577 44636714 -144642840 + AluJb SINE Alu 1 135 -177 499 91 11 11 chr6 44636715 44636803 -144642751 + (TCTCCC)n Simple_repeat Simple_repeat 3 90 0 6482 51 17 76 chr6 44636813 44638574 -144640980 + SVA Other Other 3 1386 0 1069 139 5 59 chr6 44638574 44638776 -144640778 + AluJb SINE Alu 122 312 0 5457 139 19 56 chr6 44638777 44639437 -144640117 + L1MD1 LINE L1 5226 5909 -333 1872 146 0 16 chr6 44639437 44639753 -144639801 + AluJo SINE Alu 1 311 -1 5457 139 19 56 chr6 44639753 44639921 -144639633 + L1MD1 LINE L1 5909 6082 -160 2157 92 3 3 chr6 44639921 44640213 -144639341 + AluSx SINE Alu 1 292 -20 5457 139 19 56 chr6 44640213 44640369 -144639185 + L1MD1 LINE L1 6082 6171 -71 2012 110 38 0 chr6 44640369 44640659 -144638895 - AluSx SINE Alu -11 301 1 5457 139 19 56 chr6 44640659 44640729 -144638825 + L1MD1 LINE L1 6171 6242 0 233 29 0 29 chr6 44640764 44640799 -144638755 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2134 86 17 0 chr6 44640799 44641080 -144638474 - AluSp SINE Alu -24 289 1 1829 137 7 0 chr6 44641664 44641949 -144637605 - AluJb SINE Alu -25 287 1 467 221 134 0 chr6 44642334 44642461 -144637093 + MIR3 SINE MIR 31 174 -34 212 379 0 0 chr6 44642712 44642778 -144636776 + L2 LINE L2 3205 3270 -2 21 36 0 0 chr6 44642987 44643015 -144636539 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr6 44643082 44643106 -144636448 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 44643487 44643509 -144636045 + GC_rich Low_complexity Low_complexity 1 22 0 208 143 0 0 chr6 44644919 44644954 -144634600 + MIR SINE MIR 132 166 -96 293 68 0 0 chr6 44644955 44644999 -144634555 + L1MA1 LINE L1 6039 6082 -220 1478 116 14 0 chr6 44645000 44645207 -144634347 + AluSg/x SINE Alu 83 292 -18 1273 75 35 0 chr6 44645207 44645381 -144634173 + L1MA1 LINE L1 6123 6302 0 337 197 66 0 chr6 44645385 44645461 -144634093 + MIR SINE MIR 168 248 -14 342 250 62 0 chr6 44645669 44645765 -144633789 - MIR SINE MIR -62 146 45 2427 69 3 16 chr6 44645820 44646124 -144633430 - AluSc SINE Alu -9 300 1 1707 149 35 10 chr6 44646127 44646415 -144633139 - AluJo SINE Alu -17 295 1 2350 83 0 19 chr6 44646426 44646738 -144632816 - AluSc SINE Alu -3 306 1 256 268 49 12 chr6 44647374 44647456 -144632098 - L2 LINE L2 -8 3305 3221 431 261 158 30 chr6 44647719 44647793 -144631761 + MIR SINE MIR 20 83 -179 1950 89 0 4 chr6 44647793 44648040 -144631514 - AluSc SINE Alu -63 246 1 431 261 158 30 chr6 44648040 44648168 -144631386 + MIR SINE MIR 83 248 -14 264 257 188 21 chr6 44648477 44648621 -144630933 - MIR3 SINE MIR -24 184 17 765 201 73 25 chr6 44648779 44648983 -144630571 - MIR SINE MIR -41 221 8 2359 227 87 15 chr6 44649013 44649611 -144629943 - L1ME3A LINE L1 -78 6092 5452 225 94 0 0 chr6 44649619 44649651 -144629903 + (T)n Simple_repeat Simple_repeat 1 32 0 2110 135 0 0 chr6 44649976 44650279 -144629275 - AluSx SINE Alu -9 303 1 1160 141 0 0 chr6 44650379 44650542 -144629012 + AluJb SINE Alu 135 297 -15 417 266 162 6 chr6 44650660 44650833 -144628721 + MIR SINE MIR 2 201 -61 1726 123 0 32 chr6 44651820 44652073 -144627481 - AluSx SINE Alu -67 245 1 952 234 139 35 chr6 44652520 44652739 -144626815 + MER20B DNA MER1_type 63 327 -456 2232 57 3 57 chr6 44652739 44653074 -144626480 - AluY SINE Alu 0 319 1 952 234 139 35 chr6 44653074 44653169 -144626385 + MER20B DNA MER1_type 327 411 -372 1219 106 0 22 chr6 44653223 44653411 -144626143 - AluSq SINE Alu 0 313 133 2243 80 35 0 chr6 44653411 44653698 -144625856 - AluSq SINE Alu -16 297 1 1219 106 0 22 chr6 44653698 44653716 -144625838 - AluSq SINE Alu -180 133 116 754 181 70 101 chr6 44653726 44653931 -144625623 + MER20B DNA MER1_type 501 696 -87 1999 122 7 33 chr6 44653931 44654234 -144625320 + AluJb SINE Alu 1 295 -17 754 181 70 101 chr6 44654234 44654315 -144625239 + MER20B DNA MER1_type 696 778 -5 795 201 3 145 chr6 44655858 44656049 -144623505 + MIR SINE MIR 15 231 -31 1677 176 47 0 chr6 44656049 44656328 -144623226 + AluJb SINE Alu 1 292 -20 795 201 3 145 chr6 44656328 44656348 -144623206 + MIR SINE MIR 231 252 -10 2130 139 0 0 chr6 44656348 44656649 -144622905 + AluSx SINE Alu 1 301 -11 854 153 0 29 chr6 44656654 44656791 -144622763 + FLAM_A SINE Alu 1 133 0 795 201 3 145 chr6 44656791 44656861 -144622693 + MIR SINE MIR 256 262 0 2066 112 11 0 chr6 44657718 44657996 -144621558 - AluSq SINE Alu -31 282 2 230 100 0 0 chr6 44658420 44658450 -144621104 - Alu SINE Alu -270 30 1 2141 107 4 4 chr6 44658795 44659076 -144620478 + AluSx SINE Alu 1 281 -31 499 253 40 74 chr6 44659076 44659099 -144620455 + L1M4 LINE L1 3126 3148 -2998 2423 87 3 10 chr6 44659099 44659411 -144620143 + AluSq SINE Alu 1 310 -3 499 253 40 74 chr6 44659411 44659623 -144619931 + L1M4 LINE L1 3148 3352 -2794 2020 138 24 0 chr6 44659623 44659914 -144619640 - AluJb SINE Alu -14 298 1 499 253 40 74 chr6 44659914 44659973 -144619581 + L1M4 LINE L1 3352 3411 -2735 530 263 49 49 chr6 44659976 44660149 -144619405 + L1M4 LINE L1 3522 3697 -2449 1953 151 3 3 chr6 44660149 44660441 -144619113 + AluJb SINE Alu 2 293 -19 530 263 49 49 chr6 44660441 44660491 -144619063 + L1M4 LINE L1 3696 3745 -2401 1439 136 30 53 chr6 44660493 44660587 -144618967 - Tigger2 DNA MER2_type 0 2718 2623 1857 124 40 4 chr6 44660587 44660893 -144618661 - AluSx SINE Alu 0 316 1 1439 136 30 53 chr6 44660893 44661061 -144618493 - Tigger2 DNA MER2_type -95 2623 2461 3845 153 17 48 chr6 44661130 44661537 -144618017 - Tigger2 DNA MER2_type -1974 744 367 1606 138 63 7 chr6 44661537 44661806 -144617748 - AluJo SINE Alu -28 284 1 3845 153 17 48 chr6 44661806 44662104 -144617450 - Tigger2 DNA MER2_type -2351 367 61 398 208 0 0 chr6 44662102 44662179 -144617375 + Tigger2 DNA MER2_type 259 335 -2383 * 904 251 86 14 chr6 44662191 44662482 -144617072 + L1M4 LINE L1 4518 4829 -1317 1350 185 44 47 chr6 44662489 44662624 -144616930 + AluJo SINE Alu 1 135 -177 1978 116 7 31 chr6 44662624 44662917 -144616637 + AluSx SINE Alu 20 305 -7 1350 185 44 47 chr6 44662917 44663078 -144616476 + AluJo SINE Alu 135 296 -16 2309 88 7 3 chr6 44663084 44663380 -144616174 + AluSq SINE Alu 1 297 -16 1387 185 83 22 chr6 44663515 44663791 -144615763 - AluJo SINE Alu -19 293 1 492 246 29 7 chr6 44664279 44664417 -144615137 + MIR3 SINE MIR 57 197 -11 2055 144 6 10 chr6 44665040 44665353 -144614201 - AluSx SINE Alu 0 312 1 373 270 98 6 chr6 44666018 44666192 -144613362 + MIR SINE MIR 47 236 -26 2043 138 0 0 chr6 44666279 44666587 -144612967 - AluSx SINE Alu 0 308 1 2080 115 7 16 chr6 44666678 44666983 -144612571 - AluSx SINE Alu -10 302 1 1862 152 7 26 chr6 44667360 44667670 -144611884 + AluJo SINE Alu 1 304 -8 27 0 0 0 chr6 44668011 44668038 -144611516 + AT_rich Low_complexity Low_complexity 1 27 0 1774 216 41 36 chr6 44668472 44668888 -144610666 - LTR40c LTR ERVL -13 452 35 2459 46 0 26 chr6 44668889 44669195 -144610359 - AluY SINE Alu -13 298 1 2031 159 0 0 chr6 44669224 44669526 -144610028 + AluJb SINE Alu 1 302 -10 1742 10 0 0 chr6 44670194 44670390 -144609164 - L1PA2 LINE L1 -3 6152 5957 698 224 13 6 chr6 44670892 44671048 -144608506 - L1MC5 LINE L1 -516 7445 7289 280 86 16 114 chr6 44671078 44671155 -144608399 - LTR40c LTR ERVL -1 518 407 1366 186 100 4 chr6 44671720 44671989 -144607565 - AluJo SINE Alu -7 295 1 2462 68 3 0 chr6 44671998 44672293 -144607261 - AluSp SINE Alu -17 296 1 685 31 62 21 chr6 44672482 44672578 -144606976 + HY3 scRNA scRNA 1 100 -1 2007 123 53 0 chr6 44673291 44673575 -144605979 - AluSq SINE Alu -13 300 2 2018 108 56 3 chr6 44673619 44673905 -144605649 + AluSq SINE Alu 1 301 -12 287 293 66 0 chr6 44674140 44674246 -144605308 - L2 LINE L2 0 3313 3201 346 217 29 21 chr6 44674449 44674569 -144604985 - L1MC5 LINE L1 0 8042 7924 1888 157 27 3 chr6 44674569 44674869 -144604685 - AluJo SINE Alu -1 311 5 346 217 29 21 chr6 44674869 44674885 -144604669 - L1MC5 LINE L1 -118 7924 7670 1266 167 14 5 chr6 44674987 44675202 -144604352 - AluSg/x SINE Alu -19 293 77 530 233 78 90 chr6 44675204 44675288 -144604266 - L1MC5 LINE L1 -219 7742 7658 2410 59 0 77 chr6 44675288 44675611 -144603943 + AluSq SINE Alu 1 298 -15 530 233 78 90 chr6 44675611 44675697 -144603857 - L1MC5 LINE L1 -303 7658 7572 2226 135 0 0 chr6 44675697 44676008 -144603546 - AluSx SINE Alu -1 311 1 530 233 78 90 chr6 44676008 44676313 -144603241 - L1MC5 LINE L1 -389 7572 7272 2076 133 7 3 chr6 44676333 44676635 -144602919 - AluSq SINE Alu -1 312 10 855 167 6 26 chr6 44676647 44676803 -144602751 - MLT1A1 LTR MaLR -212 153 1 1220 154 85 8 chr6 44676803 44677049 -144602505 - L1ME LINE L1 -360 5806 5542 2227 98 27 0 chr6 44677064 44677359 -144602195 - AluSx SINE Alu -9 303 1 1918 177 3 0 chr6 44677395 44677695 -144601859 - AluJb SINE Alu -11 301 1 932 282 75 3 chr6 44677736 44678041 -144601513 - L1MC4 LINE L1 -1013 7029 6703 2411 84 3 3 chr6 44678068 44678377 -144601177 + AluSc SINE Alu 1 309 0 2177 93 0 10 chr6 44678656 44678946 -144600608 - AluSq SINE Alu -3 310 24 706 236 24 118 chr6 44679103 44679204 -144600350 - L1MC4 LINE L1 -1854 5954 5845 2439 80 0 13 chr6 44679204 44679506 -144600048 + AluSg SINE Alu 1 298 -12 706 236 24 118 chr6 44679506 44679735 -144599819 - L1MC4 LINE L1 -1963 5845 5655 2198 138 3 0 chr6 44679783 44680094 -144599460 + AluSp SINE Alu 1 312 -1 1813 139 52 3 chr6 44680133 44680442 -144599112 - L1MB8 LINE L1 -11 6167 5844 238 182 0 0 chr6 44680451 44680495 -144599059 + L1MB8 LINE L1 5810 5853 -331 641 232 53 0 chr6 44680504 44680655 -144598899 - L1ME3A LINE L1 -262 5908 5750 1760 130 13 63 chr6 44680669 44680845 -144598709 - AluSx SINE Alu -9 303 147 2069 121 0 36 chr6 44680845 44681150 -144598404 - AluSg SINE Alu -16 294 1 1760 130 13 63 chr6 44681150 44681274 -144598280 - AluSx SINE Alu -165 147 18 397 233 69 9 chr6 44681277 44681344 -144598210 + L1MC4 LINE L1 6062 6140 -1902 2219 93 0 33 chr6 44681344 44681644 -144597910 + AluSg SINE Alu 1 290 -20 397 233 69 9 chr6 44681644 44681692 -144597862 + L1MC4 LINE L1 6140 6184 -1858 706 224 178 4 chr6 44681711 44681975 -144597579 - L1ME3A LINE L1 -454 5712 5403 981 239 48 67 chr6 44681976 44682166 -144597388 - L1ME3A LINE L1 -766 5380 5188 2470 87 0 0 chr6 44682166 44682465 -144597089 - AluSq SINE Alu -14 299 1 981 239 48 67 chr6 44682465 44682814 -144596740 - L1ME3A LINE L1 -958 5188 4851 428 183 120 57 chr6 44682817 44682857 -144596697 - L1MB8 LINE L1 -2369 5439 5403 2372 92 0 0 chr6 44682857 44683150 -144596404 - AluSc SINE Alu -16 293 1 1826 179 3 7 chr6 44683150 44683457 -144596097 - AluJb SINE Alu -5 307 2 2016 126 3 46 chr6 44683461 44683787 -144595767 - AluJo SINE Alu 0 312 1 428 183 120 57 chr6 44683787 44683915 -144595639 - L1MB8 LINE L1 -2407 5401 5254 894 189 122 45 chr6 44684124 44684346 -144595208 - MER8 DNA MER2_type 0 239 1 2299 90 17 0 chr6 44684686 44684985 -144594569 + AluSc SINE Alu 3 306 -3 979 199 0 0 chr6 44684993 44685154 -144594400 + FRAM SINE Alu 1 161 -5 298 337 5 74 chr6 44687561 44687751 -144591803 + MER5B DNA MER1_type 1 177 -1 257 215 23 115 chr6 44687953 44688083 -144591471 + MIR SINE MIR 81 198 -64 969 150 7 0 chr6 44688297 44688437 -144591117 + AluJo SINE Alu 1 141 -171 1862 146 21 7 chr6 44688446 44688726 -144590828 + AluJo SINE Alu 9 292 -20 1539 189 47 0 chr6 44689700 44689996 -144589558 + AluJb SINE Alu 1 310 -2 2360 75 4 0 chr6 44690006 44690287 -144589267 + AluSp SINE Alu 1 282 -31 1169 153 30 125 chr6 44690438 44690593 -144588961 + MER33 DNA MER1_type 1 156 -2429 2448 124 100 96 chr6 44690593 44691205 -144588349 - LTR18B LTR ERVL 0 614 1 1169 153 30 125 chr6 44691205 44691307 -144588247 + MER33 DNA MER1_type 156 266 -2319 2252 95 0 43 chr6 44691307 44691633 -144587921 + AluSq SINE Alu 1 312 -1 1169 153 30 125 chr6 44691633 44691658 -144587896 + MER33 DNA MER1_type 266 233 -2352 2295 79 14 3 chr6 44691658 44691949 -144587605 - AluY SINE Alu -17 294 1 1169 153 30 125 chr6 44691949 44692025 -144587529 + MER33 DNA MER1_type 232 314 -10 626 216 8 15 chr6 44692037 44692171 -144587383 - FLAM_A SINE Alu 0 133 1 32 0 0 0 chr6 44692175 44692207 -144587347 + AT_rich Low_complexity Low_complexity 1 32 0 1462 121 0 10 chr6 44692207 44692406 -144587148 - AluSq SINE Alu -116 197 1 582 124 160 108 chr6 44692447 44692641 -144586913 - MER3 DNA MER1_type -5 204 1 289 208 19 0 chr6 44693241 44693294 -144586260 + MER106A DNA MER1_type 1 54 -182 957 182 87 9 chr6 44693295 44693526 -144586028 - L1MB8 LINE L1 0 7597 7349 347 219 0 14 chr6 44693526 44693599 -144585955 + MER106B DNA MER1_type 40 111 -948 591 89 13 0 chr6 44693599 44693678 -144585876 + AluJ/FLAM SINE Alu 1 80 -232 22 35 0 0 chr6 44693678 44693707 -144585847 + AT_rich Low_complexity Low_complexity 1 29 0 1770 123 89 150 chr6 44693707 44694019 -144585535 + MER106B DNA MER1_type 100 374 -685 1937 179 0 0 chr6 44694019 44694321 -144585233 - AluJo SINE Alu -10 302 1 1770 123 89 150 chr6 44694321 44694489 -144585065 + MER106B DNA MER1_type 374 551 -508 1285 96 25 0 chr6 44694495 44694693 -144584861 - L1MA3 LINE L1 0 6305 6103 6623 185 34 121 chr6 44694693 44695009 -144584545 - L1MB8 LINE L1 -562 7162 6820 2407 93 0 7 chr6 44695009 44695319 -144584235 - AluY SINE Alu -3 308 1 1952 155 3 0 chr6 44695322 44695612 -144583942 - AluSx SINE Alu -21 291 1 6623 185 34 121 chr6 44695612 44696371 -144583183 - L1MB8 LINE L1 -906 6818 5994 248 0 31 0 chr6 44696371 44696403 -144583151 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6623 185 34 121 chr6 44696403 44696464 -144583090 - L1MB8 LINE L1 -1730 5994 5929 1180 152 0 0 chr6 44696464 44696628 -144582926 - AluJb SINE Alu -20 292 129 6623 185 34 121 chr6 44696628 44696646 -144582908 - L1MB8 LINE L1 -1795 5929 5911 2455 62 0 3 chr6 44696646 44696934 -144582620 - AluY SINE Alu -24 287 1 6623 185 34 121 chr6 44696934 44697192 -144582362 - L1MB8 LINE L1 -1813 5911 5632 2113 119 0 0 chr6 44697192 44697469 -144582085 - AluSx SINE Alu -22 290 14 6623 185 34 121 chr6 44697469 44698949 -144580605 - L1MB8 LINE L1 -2092 5632 4449 1832 156 10 3 chr6 44698950 44699245 -144580309 - AluJb SINE Alu -2 310 14 619 115 0 0 chr6 44699245 44699332 -144580222 + AluJb SINE Alu 207 293 -19 189 0 0 0 chr6 44699339 44699360 -144580194 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 2202 128 0 0 chr6 44699361 44699658 -144579896 + AluSx SINE Alu 1 297 -15 21201 134 45 33 chr6 44699661 44700024 -144579530 - L1MB8 LINE L1 -3810 3755 3398 2074 147 20 0 chr6 44700024 44700330 -144579224 - AluSx SINE Alu 0 312 1 21201 134 45 33 chr6 44700330 44700899 -144578655 - L1MB8 LINE L1 -4167 3398 2837 2268 88 3 20 chr6 44700899 44701196 -144578358 + AluSp SINE Alu 7 298 -15 21201 134 45 33 chr6 44701196 44701743 -144577811 - L1MB8 LINE L1 -4728 2837 2298 1495 183 38 38 chr6 44701743 44702032 -144577522 - AluJo SINE Alu -23 289 1 21201 134 45 33 chr6 44702032 44703571 -144575983 - L1MB8 LINE L1 -5267 2298 779 441 0 0 0 chr6 44703571 44703620 -144575934 + (TCTCC)n Simple_repeat Simple_repeat 4 52 0 21201 134 45 33 chr6 44703620 44704212 -144575342 - L1MB8 LINE L1 -6786 779 95 1051 172 121 79 chr6 44704212 44704502 -144575052 - AluJb SINE Alu 0 302 1 21201 134 45 33 chr6 44704502 44704590 -144574964 - L1MB8 LINE L1 -7470 95 10 2142 107 7 4 chr6 44704593 44704899 -144574655 - AluSx SINE Alu 0 307 1 1602 157 87 23 chr6 44704899 44704972 -144574582 + MER106B DNA MER1_type 541 608 -451 2136 110 0 29 chr6 44704972 44705281 -144574273 + AluSg SINE Alu 1 300 -10 1602 157 87 23 chr6 44705281 44705692 -144573862 + MER106B DNA MER1_type 608 1056 -3 532 264 16 0 chr6 44710819 44710944 -144568610 - FLAM_A SINE Alu -6 127 1 265 273 58 65 chr6 44711045 44711184 -144568370 - MIR SINE MIR -73 189 52 371 240 10 42 chr6 44711238 44711334 -144568220 - L2 LINE L2 -1 3271 3179 827 232 27 13 chr6 44711593 44711841 -144567713 - MIR SINE MIR 0 262 16 2057 108 45 7 chr6 44712175 44712463 -144567091 - AluJb SINE Alu -13 299 1 612 215 51 99 chr6 44712474 44712767 -144566787 - L1ME4a LINE L1 -3 6118 5840 721 225 0 0 chr6 44712784 44712922 -144566632 - FLAM_C SINE Alu -5 138 1 648 233 29 94 chr6 44712922 44713134 -144566420 - L1ME4a LINE L1 -292 5829 5641 2285 82 7 0 chr6 44713134 44713446 -144566108 + AluY SINE Alu 1 314 0 648 233 29 94 chr6 44713446 44713541 -144566013 - L1ME4a LINE L1 -480 5641 5541 285 172 118 75 chr6 44713556 44713590 -144565964 - MER5A DNA MER1_type -26 163 132 2322 103 0 0 chr6 44713590 44713892 -144565662 + AluY SINE Alu 1 302 -9 285 172 118 75 chr6 44713892 44713950 -144565604 - MER5A DNA MER1_type -57 132 67 1985 133 10 3 chr6 44713950 44714244 -144565310 - AluJb SINE Alu -16 296 1 217 288 0 15 chr6 44714284 44714350 -144565204 + MIR3 SINE MIR 122 186 -22 234 238 138 12 chr6 44714622 44714702 -144564852 + L2 LINE L2 3221 3310 -3 180 0 0 0 chr6 44715560 44715580 -144563974 + (T)n Simple_repeat Simple_repeat 1 20 0 2132 122 7 0 chr6 44715723 44716018 -144563536 + AluSx SINE Alu 1 297 -15 457 171 27 96 chr6 44716033 44716179 -144563375 - L1MA7 LINE L1 -1 6290 6155 * 3341 165 29 21 chr6 44716171 44716800 -144562754 - L1MA8 LINE L1 -235 6056 5423 375 212 8 59 chr6 44716847 44716965 -144562589 - L1MC5 LINE L1 -26 7935 7824 473 103 15 0 chr6 44716969 44717037 -144562517 + AluS SINE Alu 3 71 -241 2087 98 41 10 chr6 44717170 44717465 -144562089 + AluSg SINE Alu 1 304 -6 652 209 12 78 chr6 44717466 44717601 -144561953 - L1MC5 LINE L1 -131 7830 7717 2601 137 30 2 chr6 44717601 44718040 -144561514 - L1MB3 LINE L1 0 6183 5733 652 209 12 78 chr6 44718040 44718148 -144561406 - L1MC5 LINE L1 -244 7717 7603 28 0 0 26 chr6 44719049 44719063 -144560491 + AT_rich Low_complexity Low_complexity 1 14 -24 2331 80 7 0 chr6 44719063 44719350 -144560204 + AluSq SINE Alu 1 289 -24 28 0 0 26 chr6 44719350 44719374 -144560180 + AT_rich Low_complexity Low_complexity 14 38 0 1430 183 107 8 chr6 44719374 44719478 -144560076 + AluJo SINE Alu 1 93 -219 2236 113 0 3 chr6 44719478 44719779 -144559775 + AluSx SINE Alu 1 300 -12 1430 183 107 8 chr6 44719779 44719936 -144559618 + AluJo SINE Alu 93 288 -24 2036 140 13 7 chr6 44720032 44720339 -144559215 - AluSx SINE Alu -3 309 1 410 254 35 12 chr6 44720509 44720678 -144558876 - L1ME3A LINE L1 -220 5950 5778 2062 127 16 10 chr6 44720678 44720985 -144558569 - AluSx SINE Alu -2 310 2 639 152 159 0 chr6 44720994 44721139 -144558415 - L1MB7 LINE L1 0 6184 6017 654 255 44 81 chr6 44721140 44721438 -144558116 - L1ME3A LINE L1 -391 5779 5493 598 269 124 0 chr6 44721653 44721854 -144557700 + MIR SINE MIR 2 227 -35 215 345 27 9 chr6 44722371 44722481 -144557073 + MIR SINE MIR 39 150 -58 635 95 0 0 chr6 44724880 44724964 -144554590 + HY3 scRNA scRNA 13 96 -5 207 309 25 25 chr6 44725120 44725201 -144554353 + L3 LINE CR1 584 664 -913 2267 109 0 0 chr6 44725284 44725586 -144553968 + AluSc SINE Alu 1 302 -7 1505 171 41 8 chr6 44729034 44729309 -144550245 + AluJo SINE Alu 30 312 0 1730 174 10 16 chr6 44729960 44730271 -144549283 + AluJo SINE Alu 1 309 -3 822 150 0 0 chr6 44730271 44730384 -144549170 + AluJo/FRAM SINE Alu 134 246 -66 31 0 0 0 chr6 44730431 44730462 -144549092 + AT_rich Low_complexity Low_complexity 1 31 0 453 73 0 0 chr6 44730462 44730517 -144549037 + Alu SINE Alu 234 288 -24 873 246 117 21 chr6 44731872 44732373 -144547181 + L1ME4a LINE L1 5318 5884 -237 417 170 138 0 chr6 44732426 44732520 -144547034 + L1ME4a LINE L1 6011 6117 -4 2294 112 0 3 chr6 44732723 44733035 -144546519 - AluSx SINE Alu -1 311 1 2198 106 7 0 chr6 44733095 44733388 -144546166 + AluSq SINE Alu 1 295 -18 2373 108 0 0 chr6 44733399 44733705 -144545849 + AluSx SINE Alu 1 306 -6 180 0 0 0 chr6 44733705 44733725 -144545829 + (CATAA)n Simple_repeat Simple_repeat 4 23 0 809 128 17 8 chr6 44733725 44733842 -144545712 - AluJb SINE Alu -194 118 1 5903 78 25 27 chr6 44734782 44735630 -144543924 + L1PA12 LINE L1 5308 6153 -15 21 71 0 0 chr6 44736022 44736064 -144543490 + AT_rich Low_complexity Low_complexity 1 42 0 445 222 208 0 chr6 44736125 44736269 -144543285 - FRAM SINE Alu -2 174 1 284 293 68 23 chr6 44736270 44736403 -144543151 - L1M4 LINE L1 -3058 3088 2950 1425 148 54 67 chr6 44736729 44736877 -144542677 + AluJo SINE Alu 1 146 -166 2155 90 0 28 chr6 44736877 44737190 -144542364 + AluSg SINE Alu 1 305 0 1425 148 54 67 chr6 44737190 44737338 -144542216 + AluJo SINE Alu 146 294 -18 629 81 0 20 chr6 44737348 44737447 -144542107 + AluY SINE Alu 214 310 -1 2371 95 16 0 chr6 44737495 44737801 -144541753 - AluSq SINE Alu 0 313 3 2138 69 0 4 chr6 44738061 44738322 -144541232 + AluSg SINE Alu 3 262 -48 204 222 178 33 chr6 44739574 44739664 -144539890 - L2 LINE L2 0 3313 3211 23 0 0 0 chr6 44740245 44740268 -144539286 + GC_rich Low_complexity Low_complexity 1 23 0 378 100 0 0 chr6 44740539 44740599 -144538955 + (CGG)n Simple_repeat Simple_repeat 2 61 0 2414 70 7 0 chr6 44741127 44741427 -144538127 - AluSx SINE Alu -10 302 1 244 252 118 16 chr6 44742144 44742271 -144537283 - L2 LINE L2 -214 3058 2919 273 292 0 0 chr6 44742390 44742462 -144537092 + L2 LINE L2 3201 3272 0 2247 95 0 3 chr6 44742668 44742964 -144536590 - AluSc SINE Alu -14 295 1 532 286 111 0 chr6 44744044 44744261 -144535293 + MIR SINE MIR 5 245 -17 883 138 0 0 chr6 44744344 44744474 -144535080 - FLAM_C SINE Alu -3 130 1 1980 141 0 41 chr6 44745407 44745727 -144533827 + AluJb SINE Alu 1 307 -5 645 160 0 113 chr6 44746235 44746385 -144533169 - FLAM_A SINE Alu 0 133 1 1866 116 95 0 chr6 44746815 44747100 -144532454 - AluSx SINE Alu 0 312 1 2048 142 3 13 chr6 44747100 44747410 -144532144 - AluSx SINE Alu -5 307 1 758 135 0 117 chr6 44747668 44747720 -144531834 + AluJb SINE Alu 85 141 -171 2338 99 3 3 chr6 44747720 44748024 -144531530 + AluSq SINE Alu 1 304 -9 758 135 0 117 chr6 44748024 44748134 -144531420 + AluJb SINE Alu 141 228 -84 418 298 151 5 chr6 44748932 44749137 -144530417 + MIR SINE MIR 13 247 -15 899 167 118 9 chr6 44749353 44749632 -144529922 - MER46C DNA MER2_type 0 338 2 686 258 131 16 chr6 44749637 44750025 -144529529 - L1ME4a LINE L1 -30 6091 5659 844 138 0 15 chr6 44750402 44750532 -144529022 + FLAM_C SINE Alu 1 128 -5 268 164 0 55 chr6 44750560 44750615 -144528939 - FLAM SINE Alu -6 127 76 585 220 42 42 chr6 44751061 44751252 -144528302 - MIR SINE MIR -12 250 60 727 175 4 158 chr6 44751435 44751510 -144528044 - MIR SINE MIR -46 216 131 790 178 0 0 chr6 44751510 44751628 -144527926 - FLAM_C SINE Alu -15 118 1 727 175 4 158 chr6 44751628 44751798 -144527756 - MIR SINE MIR -131 131 9 1916 182 0 0 chr6 44752544 44752846 -144526708 - AluJo SINE Alu -8 304 3 2321 97 6 0 chr6 44753274 44753585 -144525969 - AluSp SINE Alu 0 313 1 1197 83 45 0 chr6 44753701 44753857 -144525697 + AluSg/x SINE Alu 137 299 -13 1102 144 70 144 chr6 44754385 44754529 -144525025 - AluJo SINE Alu -14 298 186 2080 93 3 71 chr6 44754529 44754852 -144524702 - AluSc SINE Alu -8 301 1 1102 144 70 144 chr6 44754852 44755005 -144524549 - AluJo SINE Alu -126 186 23 1887 175 24 6 chr6 44755089 44755427 -144524127 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr6 44755467 44755488 -144524066 + AT_rich Low_complexity Low_complexity 1 21 0 2233 115 0 0 chr6 44755489 44755785 -144523769 + AluSc SINE Alu 1 296 -13 2040 147 13 0 chr6 44755842 44756148 -144523406 - AluSx SINE Alu -2 310 1 420 238 60 46 chr6 44756519 44756670 -144522884 - MIR SINE MIR -12 250 98 283 289 0 22 chr6 44757103 44757193 -144522361 + MIR SINE MIR 57 144 -118 196 224 0 0 chr6 44757299 44757348 -144522206 - MIR SINE MIR -15 247 199 1213 195 61 0 chr6 44757554 44757800 -144521754 + L1MD3 LINE L1 7016 7276 -719 543 272 14 14 chr6 44757802 44757949 -144521605 + MLT1F1 LTR MaLR 1 147 -420 2733 156 63 49 chr6 44757949 44758386 -144521168 + L1MD3 LINE L1 7424 7872 -123 1208 244 0 0 chr6 44758386 44758624 -144520930 + MER8 DNA MER2_type 1 238 -1 2733 156 63 49 chr6 44758624 44758739 -144520815 + L1MD3 LINE L1 7872 7984 -11 597 275 84 0 chr6 44758766 44758944 -144520610 + MIR SINE MIR 29 221 -41 769 183 8 0 chr6 44758948 44759079 -144520475 + FLAM_C SINE Alu 2 133 0 651 262 79 5 chr6 44759976 44760178 -144519376 - L1ME3 LINE L1 -7 6155 5939 194 269 102 9 chr6 44760611 44760719 -144518835 - L2 LINE L2 -18 3254 3137 1694 172 14 14 chr6 44761319 44761610 -144517944 + AluJo SINE Alu 1 291 -21 2266 122 3 3 chr6 44761616 44761927 -144517627 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr6 44761934 44761954 -144517600 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 267 290 0 0 chr6 44764067 44764136 -144515418 - L2 LINE L2 -14 3258 3190 1523 194 73 0 chr6 44764371 44764644 -144514910 - AluJb SINE Alu -19 293 1 1687 147 85 0 chr6 44764657 44764952 -144514602 - AluSx SINE Alu 0 317 1 2351 81 0 14 chr6 44764962 44765258 -144514296 - AluY SINE Alu -19 292 1 27 73 0 0 chr6 44765363 44765418 -144514136 + AT_rich Low_complexity Low_complexity 1 55 0 214 218 109 0 chr6 44766023 44766078 -144513476 + MIR SINE MIR 88 148 -114 285 278 45 38 chr6 44766193 44766326 -144513228 + L2 LINE L2 3180 3313 0 1203 181 10 0 chr6 44766468 44766667 -144512887 - AluJo SINE Alu -94 218 18 2307 121 0 0 chr6 44767024 44767330 -144512224 - AluSx SINE Alu -6 306 1 755 263 95 4 chr6 44769285 44769517 -144510037 + MIR SINE MIR 9 261 -1 2307 97 3 7 chr6 44769880 44770188 -144509366 - AluSx SINE Alu -5 307 1 865 224 79 0 chr6 44770632 44770860 -144508694 + MIR SINE MIR 12 257 -5 1939 158 0 3 chr6 44771241 44771539 -144508015 - AluJo SINE Alu 0 312 16 1668 153 29 22 chr6 44772759 44773033 -144506521 - AluJo SINE Alu -36 276 1 516 179 85 0 chr6 44773050 44773156 -144506398 - FLAM_A SINE Alu -5 137 23 617 274 133 0 chr6 44773206 44773432 -144506122 - MIR SINE MIR -6 256 1 2235 100 7 3 chr6 44773728 44774028 -144505526 - AluSc SINE Alu -8 301 1 545 269 86 0 chr6 44774501 44774698 -144504856 - MIR SINE MIR -2 260 47 342 0 0 0 chr6 44775128 44775166 -144504388 + (TG)n Simple_repeat Simple_repeat 2 39 0 928 164 6 6 chr6 44775804 44775963 -144503591 - AluJb SINE Alu -23 289 131 900 158 44 92 chr6 44776779 44777007 -144502547 + MER20 DNA MER1_type 2 218 -1 606 237 182 0 chr6 44777968 44778166 -144501388 + MIR SINE MIR 12 245 -17 539 278 65 9 chr6 44779597 44779813 -144499741 - MIR SINE MIR -27 235 8 310 209 12 35 chr6 44779956 44780042 -144499512 + MIR SINE MIR 46 129 -133 506 255 7 0 chr6 44780761 44780914 -144498640 + CT-rich Low_complexity Low_complexity 2 155 0 270 322 35 41 chr6 44781442 44781613 -144497941 + MIR SINE MIR 23 192 -70 1986 95 4 8 chr6 44781917 44782180 -144497374 - AluSp SINE Alu -15 298 37 2363 103 0 3 chr6 44782183 44782485 -144497069 - AluSx SINE Alu -11 301 1 1473 126 36 5 chr6 44783208 44783463 -144496091 - AluSx SINE Alu 0 314 53 2000 119 0 0 chr6 44783468 44783721 -144495833 - AluSx SINE Alu -58 254 2 2536 179 77 0 chr6 44783726 44784233 -144495321 - L1M4 LINE L1 -356 5822 5277 2127 73 4 0 chr6 44784410 44784671 -144494883 - AluSp SINE Alu -15 298 37 243 0 0 0 chr6 44785174 44785201 -144494353 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2327 67 0 3 chr6 44785203 44785485 -144494069 - AluY SINE Alu -30 281 1 1816 170 0 0 chr6 44786135 44786424 -144493130 - AluJo SINE Alu -23 289 1 2931 0 0 0 chr6 44786818 44787124 -144492430 + AluYa5 SINE Alu 1 306 -5 207 60 60 40 chr6 44788037 44788087 -144491467 + (CATA)n Simple_repeat Simple_repeat 2 52 0 750 143 8 0 chr6 44788230 44788349 -144491205 + FLAM_C SINE Alu 5 124 -9 25 0 0 0 chr6 44788349 44788374 -144491180 + AT_rich Low_complexity Low_complexity 1 25 0 523 269 36 0 chr6 44788374 44788541 -144491013 + MIR SINE MIR 41 213 -49 2282 103 0 0 chr6 44789745 44790045 -144489509 + AluSg SINE Alu 1 300 -10 991 175 0 24 chr6 44790604 44790770 -144488784 + FRAM SINE Alu 1 162 -4 29 0 0 25 chr6 44791653 44791678 -144487876 + AT_rich Low_complexity Low_complexity 1 26 -13 2221 92 11 0 chr6 44791678 44791960 -144487594 + AluSq SINE Alu 13 297 -16 29 0 0 25 chr6 44791960 44791974 -144487580 + AT_rich Low_complexity Low_complexity 26 39 0 2305 81 3 0 chr6 44792034 44792318 -144487236 - AluSg SINE Alu -20 290 6 940 143 0 0 chr6 44792472 44792605 -144486949 - FLAM_C SINE Alu -10 133 1 263 221 154 29 chr6 44792631 44792767 -144486787 - L1M4 LINE L1 -2188 3958 3806 399 163 59 22 chr6 44793851 44793986 -144485568 + CT-rich Low_complexity Low_complexity 1 140 0 1325 223 72 0 chr6 44794001 44794292 -144485262 - AluJo SINE Alu 0 312 1 3987 149 68 49 chr6 44794292 44795029 -144484525 - L1MC2 LINE L1 -29 6315 5593 2317 74 7 17 chr6 44795029 44795325 -144484229 + AluY SINE Alu 1 293 -18 3987 149 68 49 chr6 44795325 44795619 -144483935 - L1MC2 LINE L1 -751 5593 5306 1134 227 71 9 chr6 44795619 44795844 -144483710 + MER8 DNA MER2_type 1 239 0 3987 149 68 49 chr6 44795844 44796110 -144483444 - L1MC2 LINE L1 -1038 5306 5046 1937 154 3 10 chr6 44796110 44796415 -144483139 - AluJb SINE Alu -9 303 1 3987 149 68 49 chr6 44796415 44796668 -144482886 - L1MC2 LINE L1 -1298 5046 4744 310 175 175 38 chr6 44796670 44796750 -144482804 + Tigger1 DNA MER2_type 3 93 -2325 755 247 18 14 chr6 44796763 44796986 -144482568 - L1MC2 LINE L1 -2659 3487 3264 2317 119 0 0 chr6 44797006 44797318 -144482236 - AluSx SINE Alu 0 312 1 2251 122 0 0 chr6 44797343 44797638 -144481916 + AluSx SINE Alu 1 295 -17 278 164 0 18 chr6 44797644 44797699 -144481855 - L1MC2 LINE L1 -2895 3251 3198 233 248 60 60 chr6 44797938 44798055 -144481499 + MIR3 SINE MIR 3 119 -89 2285 115 0 3 chr6 44798180 44798484 -144481070 - AluSx SINE Alu -9 303 1 859 80 0 0 chr6 44799072 44799185 -144480369 - L1PA5 LINE L1 -2 6152 6040 284 215 229 8 chr6 44799956 44800088 -144479466 + MIR3 SINE MIR 4 165 -43 244 75 0 25 chr6 44801087 44801127 -144478427 - MER31B LTR ERV1 0 466 428 577 182 20 20 chr6 44801133 44801232 -144478322 + FRAM SINE Alu 63 161 -15 2448 83 0 6 chr6 44801252 44801566 -144477988 - AluSx SINE Alu 0 312 1 1698 154 72 77 chr6 44801566 44801994 -144477560 - MER31B LTR ERV1 -40 426 1 204 143 43 43 chr6 44802272 44802342 -144477212 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 373 302 187 11 chr6 44803126 44803308 -144476246 + MIR SINE MIR 49 262 0 2316 106 0 3 chr6 44803745 44804048 -144475506 - AluSx SINE Alu -10 302 1 242 298 73 121 chr6 44804151 44804466 -144475088 - L2 LINE L2 -25 3247 2948 223 200 53 80 chr6 44804764 44804839 -144474715 - L2 LINE L2 -39 3233 3161 181 83 56 0 chr6 44805387 44805423 -144474131 + (TG)n Simple_repeat Simple_repeat 1 38 0 3642 248 168 45 chr6 44805825 44806162 -144473392 - HAL1 LINE L1 -104 2403 2109 2426 99 0 0 chr6 44806162 44806474 -144473080 - AluSx SINE Alu 0 312 1 3642 248 168 45 chr6 44806474 44808264 -144471290 - HAL1 LINE L1 -398 2109 14 279 300 100 61 chr6 44808846 44809028 -144470526 + MIR SINE MIR 20 206 -56 229 315 92 0 chr6 44809118 44809248 -144470306 + L2 LINE L2 2267 2408 -906 194 333 83 10 chr6 44809649 44809745 -144469809 + L2 LINE L2 2780 2882 -432 284 286 138 66 chr6 44809810 44810006 -144469548 + L2 LINE L2 2973 3182 -90 781 244 74 49 chr6 44811108 44811473 -144468081 + L2 LINE L2 2888 3261 -52 340 350 16 0 chr6 44811896 44812019 -144467535 - MIR SINE MIR -121 141 17 5869 129 21 31 chr6 44813388 44813543 -144466011 - L1MA8 LINE L1 -1 6290 6135 2226 81 0 14 chr6 44813543 44813862 -144465692 + AluSc SINE Alu 1 315 0 5869 129 21 31 chr6 44813862 44813889 -144465665 - L1MA8 LINE L1 -156 6135 6109 2336 113 0 0 chr6 44813889 44814199 -144465355 - AluSx SINE Alu -2 310 1 5869 129 21 31 chr6 44814199 44815158 -144464396 - L1MA8 LINE L1 -182 6109 5157 769 257 64 75 chr6 44815528 44815960 -144463594 - L1MC4a LINE L1 -305 5816 5463 2160 134 3 0 chr6 44816382 44816688 -144462866 - AluSx SINE Alu -5 307 1 414 323 121 31 chr6 44816723 44816790 -144462764 + L1M4 LINE L1 3507 3567 -2579 1959 152 14 0 chr6 44816790 44817080 -144462474 - AluSx SINE Alu -18 294 1 414 323 121 31 chr6 44817080 44817591 -144461963 + L1M4 LINE L1 3567 4167 -1979 1709 154 19 45 chr6 44818443 44818755 -144460799 + AluJo SINE Alu 1 304 -8 2572 75 0 0 chr6 44819467 44819775 -144459779 - AluSq SINE Alu -5 308 1 2107 116 0 3 chr6 44820283 44820592 -144458962 - AluSx SINE Alu 0 308 1 429 132 0 15 chr6 44821502 44821570 -144457984 + MER2 DNA MER2_type 32 98 -247 249 310 0 0 chr6 44821573 44821631 -144457923 - MER2 DNA MER2_type -3 342 285 1782 142 3 64 chr6 44821744 44822055 -144457499 + AluJo SINE Alu 1 292 -20 350 194 42 0 chr6 44824865 44824937 -144454617 + C-rich Low_complexity Low_complexity 4 78 0 612 143 54 0 chr6 44824937 44825105 -144454449 + CT-rich Low_complexity Low_complexity 4 180 0 724 196 17 0 chr6 44825126 44825299 -144454255 + C-rich Low_complexity Low_complexity 3 178 0 566 59 0 119 chr6 44825260 44825462 -144454092 + (TTCCC)n Simple_repeat Simple_repeat 1 178 0 * 333 158 18 0 chr6 44825468 44825525 -144454029 - Alu SINE Alu -3 299 242 646 278 76 5 chr6 44825640 44825838 -144453716 + MIR SINE MIR 25 236 -26 2140 100 21 0 chr6 44826234 44826515 -144453039 + AluSx SINE Alu 26 312 0 1471 151 50 25 chr6 44826523 44826802 -144452752 + AluJo SINE Alu 7 292 -20 2309 111 3 0 chr6 44826894 44827201 -144452353 + AluSx SINE Alu 1 308 -4 189 315 55 14 chr6 44827579 44827652 -144451902 - L3 LINE CR1 -7 1570 1495 184 111 67 67 chr6 44827641 44827686 -144451868 + MER5B DNA MER1_type 10 54 -124 * 2082 216 80 55 chr6 44827717 44827805 -144451749 - L1MC4 LINE L1 -32 8010 7926 282 56 0 0 chr6 44827805 44827841 -144451713 + (TG)n Simple_repeat Simple_repeat 1 36 0 2082 216 80 55 chr6 44827841 44828401 -144451153 - L1MC4 LINE L1 -116 7926 7346 428 331 128 53 chr6 44828492 44828851 -144450703 - L3 LINE CR1 -44 1533 1148 2062 142 3 0 chr6 44828992 44829294 -144450260 - AluSg SINE Alu -7 303 1 760 164 0 0 chr6 44830279 44830401 -144449153 + FRAM SINE Alu 55 176 0 454 273 10 108 chr6 44832041 44832235 -144447319 - MIR3 SINE MIR -4 204 30 369 270 0 0 chr6 44832666 44832755 -144446799 + L1MC4 LINE L1 6615 6703 -1339 329 311 0 0 chr6 44832699 44832789 -144446765 - L1MC4 LINE L1 -1339 6703 6614 * 459 174 0 0 chr6 44832789 44832875 -144446679 + (TG)n Simple_repeat Simple_repeat 2 87 0 2456 62 0 0 chr6 44835814 44836102 -144443452 - AluY SINE Alu -23 288 1 844 173 268 0 chr6 44836130 44836298 -144443256 - MER58A DNA MER1_type -11 213 1 2371 138 28 0 chr6 44838146 44838502 -144441052 + MER47A DNA MER2_type 1 366 0 2231 106 0 13 chr6 44840323 44840626 -144438928 + AluSg SINE Alu 1 299 -11 2051 206 87 44 chr6 44844521 44845248 -144434306 - L1ME LINE L1 -351 5815 4887 2396 88 0 0 chr6 44845248 44845542 -144434012 - AluSc SINE Alu -15 294 1 2051 206 87 44 chr6 44845542 44845819 -144433735 - L1ME LINE L1 -1279 4887 4623 504 154 77 0 chr6 44845851 44845955 -144433599 - L1ME LINE L1 -1508 4638 4527 2229 117 3 0 chr6 44845967 44846267 -144433287 - AluSx SINE Alu -11 301 1 2479 124 95 63 chr6 44847132 44847607 -144431947 + LTR2B LTR ERV1 1 490 0 2804 111 5 2 chr6 44847607 44848005 -144431549 + Harlequin LTR ERV1 1 399 -6497 * 7923 55 44 14 chr6 44847985 44849036 -144430518 + Harlequin LTR ERV1 263 1344 -5552 7338 48 17 10 chr6 44849017 44850020 -144429534 + Harlequin LTR ERV1 1565 2574 -4322 * 5034 47 19 0 chr6 44850019 44850611 -144428943 + Harlequin LTR ERV1 3352 3954 -2942 * 9039 88 5 6 chr6 44850602 44852595 -144426959 + Harlequin LTR ERV1 4251 6896 0 2485 130 78 66 chr6 44852595 44853079 -144426475 + LTR2B LTR ERV1 1 490 0 35 33 0 17 chr6 44853089 44853112 -144426442 + AT_rich Low_complexity Low_complexity 1 23 -36 831 134 0 8 chr6 44853112 44853239 -144426315 + FLAM_C SINE Alu 1 126 -7 35 33 0 17 chr6 44853239 44853275 -144426279 + AT_rich Low_complexity Low_complexity 23 59 0 780 146 32 0 chr6 44853408 44853531 -144426023 + FLAM_C SINE Alu 2 128 -15 365 333 24 6 chr6 44853815 44853980 -144425574 - L1MC/D LINE L1 -2074 5734 5567 290 328 8 0 chr6 44854168 44854287 -144425267 + L1M4 LINE L1 2932 3051 -3095 1478 127 5 32 chr6 44854542 44854678 -144424876 + AluSx SINE Alu 1 130 -182 2514 63 0 7 chr6 44854678 44854979 -144424575 + AluSc SINE Alu 1 299 -10 1478 127 5 32 chr6 44854979 44855063 -144424491 + AluSx SINE Alu 130 215 -97 1113 103 63 0 chr6 44855107 44855244 -144424310 + L1MA2 LINE L1 6119 6271 -33 2479 80 0 3 chr6 44855244 44855556 -144423998 + AluY SINE Alu 1 311 0 1113 103 63 0 chr6 44855556 44855593 -144423961 + L1MA2 LINE L1 6271 6304 0 25 0 0 0 chr6 44855593 44855618 -144423936 + AT_rich Low_complexity Low_complexity 1 25 0 1021 114 47 0 chr6 44855635 44855784 -144423770 + BC200 scRNA scRNA 2 157 -43 519 247 13 46 chr6 44855868 44856050 -144423504 + MER20B DNA MER1_type 27 202 -17 366 192 208 8 chr6 44856648 44856768 -144422786 - HAL1 LINE L1 -2172 335 192 384 281 0 0 chr6 44856784 44856866 -144422688 - HAL1 LINE L1 -2425 82 1 1311 199 36 25 chr6 44856992 44857273 -144422281 - AluJo SINE Alu -22 290 7 278 353 21 55 chr6 44857553 44857791 -144421763 - L2 LINE L2 -182 3090 2861 512 314 84 49 chr6 44857925 44858355 -144421199 - L2 LINE L2 -644 2670 2226 1973 166 0 6 chr6 44858391 44858705 -144420849 + AluSx SINE Alu 1 312 0 980 144 118 43 chr6 44858755 44858942 -144420612 + AluJo SINE Alu 87 287 -25 25 0 0 0 chr6 44858942 44858967 -144420587 + AT_rich Low_complexity Low_complexity 1 25 0 1083 214 285 6 chr6 44859047 44859412 -144420142 - MLT1J LTR MaLR -22 489 23 505 232 120 47 chr6 44859718 44859949 -144419605 + MIR SINE MIR 14 259 -3 300 326 188 18 chr6 44860595 44860813 -144418741 - MIR SINE MIR -1 261 7 184 308 19 0 chr6 44860979 44861031 -144418523 - MIR SINE MIR -133 75 23 638 153 0 0 chr6 44861763 44861861 -144417693 - AluJ/FLAM SINE Alu -213 99 2 273 325 0 0 chr6 44861886 44861966 -144417588 + L2 LINE L2 2969 3048 -224 2082 158 0 0 chr6 44862055 44862366 -144417188 - AluJo SINE Alu -1 311 1 305 242 55 22 chr6 44862697 44862788 -144416766 - MIR SINE MIR 0 262 169 2079 130 3 7 chr6 44863987 44864287 -144415267 + AluSx SINE Alu 1 299 -13 354 274 82 7 chr6 44864849 44864984 -144414570 - MIR3 SINE MIR -31 177 33 189 171 0 0 chr6 44865536 44865571 -144413983 + A-rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr6 44865707 44865729 -144413825 + (T)n Simple_repeat Simple_repeat 1 22 0 2337 83 50 12 chr6 44867313 44867652 -144411902 - L1PA16 LINE L1 -9 6157 5806 1297 194 129 19 chr6 44868931 44869241 -144410313 - MER2 DNA MER2_type 0 345 2 190 308 108 41 chr6 44870173 44870394 -144409160 + MIR3 SINE MIR 22 260 -2 2222 120 0 0 chr6 44870475 44870776 -144408778 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 44871463 44871485 -144408069 + AT_rich Low_complexity Low_complexity 1 22 0 446 233 113 1 chr6 44871850 44872092 -144407462 + LTR33 LTR ERVL 228 521 0 25 90 0 0 chr6 44872687 44872754 -144406800 + AT_rich Low_complexity Low_complexity 1 67 0 21 57 0 0 chr6 44872811 44872846 -144406708 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr6 44874010 44874023 -144405531 + (CA)n Simple_repeat Simple_repeat 1 36 0 186 43 0 0 chr6 44874023 44874046 -144405508 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 268 0 45 chr6 44874373 44874485 -144405069 + CT-rich Low_complexity Low_complexity 2 108 0 653 229 33 73 chr6 44875124 44875399 -144404155 - L2 LINE L2 -19 3294 3031 470 270 221 37 chr6 44877430 44878004 -144401550 - L1MC4a LINE L1 -1875 5933 5254 2271 97 7 3 chr6 44878121 44878421 -144401133 - AluSx SINE Alu -11 301 1 324 137 59 0 chr6 44878476 44878578 -144400976 + (TA)n Simple_repeat Simple_repeat 2 109 0 218 216 20 0 chr6 44878601 44878652 -144400902 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 245 265 8 0 chr6 44878774 44878858 -144400696 - MIR SINE MIR -67 141 71 196 322 0 0 chr6 44879202 44879261 -144400293 - MIR3 SINE MIR -9 199 141 330 300 152 40 chr6 44879503 44879826 -144399728 - L3 LINE CR1 -97 1480 1122 371 286 115 24 chr6 44880906 44881158 -144398396 - L2 LINE L2 -2 3311 3037 189 226 94 0 chr6 44882896 44882949 -144396605 - MIR SINE MIR -6 256 199 270 314 29 20 chr6 44884063 44884165 -144395389 - L2 LINE L2 -10 3262 3160 224 287 148 10 chr6 44885284 44885385 -144394169 - MIR3 SINE MIR -10 198 84 833 204 33 6 chr6 44885702 44885883 -144393671 + MER5A DNA MER1_type 1 186 -3 1300 206 140 43 chr6 44886333 44886682 -144392872 - LTR16C LTR ERVL -40 451 69 1974 148 3 22 chr6 44887386 44887704 -144391850 - AluJo SINE Alu 0 312 1 1310 181 31 59 chr6 44887790 44888111 -144391443 - L1MD2 LINE L1 -9 6350 6039 2470 76 7 0 chr6 44888111 44888415 -144391139 - AluSp SINE Alu -7 306 1 1451 221 100 6 chr6 44888706 44889046 -144390508 - MLT1A2 LTR MaLR 0 374 3 307 333 9 0 chr6 44889153 44889258 -144390296 + MIR3 SINE MIR 78 183 -25 230 287 59 44 chr6 44893215 44893351 -144386203 - MIR SINE MIR -98 164 27 251 212 35 59 chr6 44893994 44894079 -144385475 + Tigger3(Golem) DNA MER2_type 1586 1668 -1361 467 318 15 12 chr6 44894275 44894460 -144385094 - MIR3 SINE MIR -64 144 3 379 219 27 128 chr6 44895421 44895640 -144383914 - L1MC4 LINE L1 -17 8025 7829 879 195 74 25 chr6 44895687 44895945 -144383609 - L1ME2 LINE L1 -12 6152 5879 198 143 29 0 chr6 44897955 44897990 -144381564 + MIR SINE MIR 117 152 -110 1014 153 0 0 chr6 44899983 44900140 -144379414 + FRAM SINE Alu 18 174 -2 388 214 97 45 chr6 44900587 44900741 -144378813 + L1MC4a LINE L1 6013 6174 -1634 309 289 61 9 chr6 44900816 44900930 -144378624 - MIR SINE MIR -6 256 137 1267 162 108 61 chr6 44900952 44901084 -144378470 + AluJo SINE Alu 2 126 -186 1939 158 0 10 chr6 44901084 44901394 -144378160 + AluJb SINE Alu 1 307 -5 1267 162 108 61 chr6 44901394 44901557 -144377997 + AluJo SINE Alu 126 311 -1 452 292 25 0 chr6 44902528 44902648 -144376906 - L2 LINE L2 -2 3311 3189 453 263 97 11 chr6 44904069 44904244 -144375310 + MIR SINE MIR 9 198 -64 2205 109 0 0 chr6 44904252 44904546 -144375008 - AluSg SINE Alu -16 294 1 2368 77 0 0 chr6 44905195 44905506 -144374048 - AluY SINE Alu 0 311 1 208 139 28 0 chr6 44907067 44907103 -144372451 + G-rich Low_complexity Low_complexity 4 40 0 205 250 0 44 chr6 44907615 44907683 -144371871 + CT-rich Low_complexity Low_complexity 3 67 0 713 299 70 12 chr6 44909945 44910189 -144369365 - MIR SINE MIR -1 261 4 668 298 108 19 chr6 44911623 44911881 -144367673 - L3 LINE CR1 -15 1562 1282 242 333 64 12 chr6 44912352 44912523 -144367031 + L1ME4a LINE L1 5764 5943 -178 297 259 167 15 chr6 44914913 44915066 -144364488 + MIR SINE MIR 3 137 -71 396 181 23 105 chr6 44916727 44916805 -144362749 + L1ME4a LINE L1 5999 6063 -58 2137 108 0 13 chr6 44916805 44917112 -144362442 - AluSx SINE Alu -9 303 1 396 181 23 105 chr6 44917112 44917166 -144362388 + L1ME4a LINE L1 6063 6120 -1 404 305 86 16 chr6 44918277 44918464 -144361090 + MIR SINE MIR 48 247 -15 1427 169 36 75 chr6 44918464 44918665 -144360889 - AluJb SINE Alu -17 295 109 2195 103 10 3 chr6 44918665 44918966 -144360588 + AluSx SINE Alu 3 305 -7 1427 169 36 75 chr6 44918966 44919071 -144360483 - AluJb SINE Alu -203 109 1 714 202 5 61 chr6 44919236 44919398 -144360156 + MER4D LTR ERV1 390 541 -362 2192 95 23 0 chr6 44919398 44919702 -144359852 - AluY SINE Alu 0 311 1 714 202 5 61 chr6 44919702 44919737 -144359817 + MER4D LTR ERV1 541 576 -327 180 0 0 0 chr6 44919745 44919765 -144359789 + (TG)n Simple_repeat Simple_repeat 1 20 0 875 159 5 91 chr6 44919968 44920176 -144359378 + MER4E LTR ERV1 458 647 -132 * 2301 137 20 0 chr6 44920174 44920567 -144358987 - MER4D LTR ERV1 -502 401 1 372 311 58 23 chr6 44921849 44922070 -144357484 + MIR SINE MIR 15 246 -16 209 254 34 0 chr6 44922239 44922298 -144357256 + MIR SINE MIR 15 75 -187 187 222 0 22 chr6 44922609 44922654 -144356900 + MIR SINE MIR 211 254 -8 1559 153 24 4 chr6 44923235 44923483 -144356071 + AluJb SINE Alu 1 253 -59 228 280 108 6 chr6 44923983 44924140 -144355414 + L1MC4a LINE L1 4886 5058 -1088 2401 73 3 0 chr6 44924329 44924631 -144354923 - AluSg SINE Alu -7 303 1 206 216 0 0 chr6 44924665 44924702 -144354852 + (CA)n Simple_repeat Simple_repeat 2 38 0 1490 176 8 19 chr6 44924722 44924983 -144354571 - AluJb SINE Alu -54 258 1 2251 60 39 0 chr6 44925062 44925343 -144354211 + AluY SINE Alu 3 294 -17 377 222 65 37 chr6 44925425 44925533 -144354021 + MIR SINE MIR 49 159 -103 2108 92 3 7 chr6 44925535 44925848 -144353706 - AluSx SINE Alu 0 312 1 422 312 91 5 chr6 44926166 44926387 -144353167 + L1MC4a LINE L1 5690 5929 -1879 507 301 80 24 chr6 44926589 44926802 -144352752 + MIR SINE MIR 13 237 -25 288 314 47 0 chr6 44929418 44929504 -144350050 - MIR SINE MIR -60 202 113 317 309 67 0 chr6 44930824 44930973 -144348581 - L1MEd LINE L1 -5901 218 60 192 341 44 0 chr6 44931014 44931105 -144348449 + L2 LINE L2 2534 2628 -686 180 304 0 0 chr6 44933266 44933312 -144346242 + L2 LINE L2 3226 3271 -1 734 204 8 0 chr6 44933412 44933544 -144346010 - FLAM_A SINE Alu 0 133 1 327 277 123 8 chr6 44934031 44934161 -144345393 + MIR SINE MIR 56 200 -62 233 385 60 0 chr6 44941300 44941417 -144338137 - MIR SINE MIR -62 146 23 244 313 20 47 chr6 44942162 44942477 -144337077 + L1P LINE L1 4890 5199 -947 275 193 18 0 chr6 44942559 44942616 -144336938 + L1MDa LINE L1 32 89 -6451 1284 225 214 10 chr6 44942620 44943199 -144336355 + L1MDa LINE L1 255 1130 -5410 1084 154 0 6 chr6 44943202 44943377 -144336177 + AluSg/x SINE Alu 126 299 -11 1634 165 118 20 chr6 44943380 44943777 -144335777 + L1MDa LINE L1 1134 1589 -4951 1943 149 3 16 chr6 44943777 44944092 -144335462 + AluJo SINE Alu 1 311 -1 1634 165 118 20 chr6 44944092 44944184 -144335370 + L1MDa LINE L1 1589 1671 -4869 1894 137 55 0 chr6 44944209 44944530 -144335024 + AluSx SINE Alu 1 337 0 2018 127 45 45 chr6 44944546 44944972 -144334582 + MER65A LTR ERV1 20 445 0 6426 184 87 73 chr6 44944979 44946170 -144333384 + MER65A-int LTR ERV1 12 1184 -3687 2028 107 0 0 chr6 44946170 44946440 -144333114 + AluSx SINE Alu 26 295 -17 6426 184 87 73 chr6 44946440 44946663 -144332891 + MER65A-int LTR ERV1 1184 1402 -3469 2536 175 118 83 chr6 44946663 44947617 -144331937 + LTR57-int LTR ERVL 552 1539 -3804 729 185 15 0 chr6 44947618 44947748 -144331806 - FLAM_A SINE Alu -1 132 1 6426 184 87 73 chr6 44947748 44948174 -144331380 + MER65A-int LTR ERV1 1401 2508 -2363 1792 181 0 7 chr6 44948174 44948484 -144331070 + AluJb SINE Alu 1 308 -4 2226 202 124 84 chr6 44948487 44949308 -144330246 + MER65A-int LTR ERV1 3325 4112 -2714 2009 116 20 0 chr6 44949308 44949602 -144329952 - AluSx SINE Alu -10 302 3 2226 202 124 84 chr6 44949602 44949951 -144329603 + MER65A-int LTR ERV1 4112 4446 -2380 2186 92 3 0 chr6 44949951 44950243 -144329311 - AluSq SINE Alu -20 293 1 2226 202 124 84 chr6 44950243 44950308 -144329246 + MER65A-int LTR ERV1 4446 5589 -1237 1388 228 90 88 chr6 44950385 44950421 -144329133 + MER65A-int LTR ERV1 3605 3639 -1232 1853 138 10 3 chr6 44950421 44950712 -144328842 + AluJo SINE Alu 1 293 -19 2018 112 7 10 chr6 44950712 44950847 -144328707 + AluY SINE Alu 1 135 -176 2100 91 14 0 chr6 44950847 44951143 -144328411 + AluSq SINE Alu 1 300 -13 2018 112 7 10 chr6 44951143 44951312 -144328242 + AluY SINE Alu 135 304 -7 1388 228 90 88 chr6 44951312 44951761 -144327793 + MER65A-int LTR ERV1 3638 4092 -779 * 1894 188 28 56 chr6 44951728 44952196 -144327358 + MER65A-int LTR ERV1 4397 4851 -20 4537 145 62 31 chr6 44952203 44952216 -144327338 + L1MDa LINE L1 1649 1660 -4880 2387 121 59 48 chr6 44952216 44952486 -144327068 + MER65A LTR ERV1 1 279 -166 1760 167 6 6 chr6 44952486 44952798 -144326756 - AluJo SINE Alu 0 312 1 2387 121 59 48 chr6 44952798 44952967 -144326587 + MER65A LTR ERV1 279 445 0 4537 145 62 31 chr6 44952967 44953295 -144326259 + L1MDa LINE L1 1660 1976 -4564 2048 120 0 26 chr6 44953295 44953604 -144325950 - AluSx SINE Alu -9 303 3 4537 145 62 31 chr6 44953604 44954160 -144325394 + L1MDa LINE L1 1976 2591 -3949 1891 153 0 0 chr6 44954160 44954455 -144325099 + AluSx SINE Alu 1 295 -17 4537 145 62 31 chr6 44954455 44954593 -144324961 + L1MDa LINE L1 2591 2723 -3817 782 144 0 144 chr6 44954597 44954784 -144324770 - FRAM SINE Alu -18 158 1 736 196 45 15 chr6 44954784 44954983 -144324571 + L1MDa LINE L1 2720 2924 -3616 576 160 110 0 chr6 44954984 44955084 -144324470 + MLT1B LTR MaLR 1 111 -279 954 44 0 0 chr6 44955087 44955201 -144324353 + LTR22A LTR ERVK 4 117 -341 7823 113 53 7 chr6 44955203 44956361 -144323193 - HERVK22 LTR ERVK -5626 1211 1 3258 64 44 33 chr6 44956361 44956494 -144323060 - LTR22A LTR ERVK 0 458 328 2003 138 0 7 chr6 44956494 44956799 -144322755 - AluSg SINE Alu -7 303 1 3258 64 44 33 chr6 44956799 44957118 -144322436 - LTR22A LTR ERVK -130 328 1 860 203 30 25 chr6 44957230 44957427 -144322127 + MLT1B LTR MaLR 193 390 0 2430 202 32 35 chr6 44957427 44957679 -144321875 + L1MDa LINE L1 2921 3172 -3368 1858 103 65 34 chr6 44957679 44957971 -144321583 + AluSx SINE Alu 1 301 -11 2430 202 32 35 chr6 44957971 44958382 -144321172 + L1MDa LINE L1 3172 3582 -2958 1627 101 0 0 chr6 44958384 44958602 -144320952 + AluSx SINE Alu 1 218 -94 2217 73 6 19 chr6 44959298 44959612 -144319942 + AluSg SINE Alu 1 310 0 611 178 104 6 chr6 44959990 44960153 -144319401 - Charlie2 DNA MER1_type -2 2860 2682 922 83 8 23 chr6 44960153 44960286 -144319268 - AluSg/x SINE Alu -18 292 162 379 294 200 34 chr6 44960334 44960673 -144318881 - L1MCa LINE L1 -1341 3347 880 1927 78 0 0 chr6 44960961 44961205 -144318349 + AluSg SINE Alu 59 302 -8 2362 75 0 0 chr6 44961218 44961511 -144318043 + AluSg SINE Alu 1 293 -17 957 167 0 23 chr6 44961511 44961685 -144317869 + AluJb SINE Alu 134 303 -9 2401 64 0 6 chr6 44961755 44962068 -144317486 + AluY SINE Alu 1 311 0 231 111 156 0 chr6 44962211 44962256 -144317298 + MIR SINE MIR 95 146 -62 975 261 78 66 chr6 44963023 44963460 -144316094 - LTR67 LTR ERVL -4 553 112 734 197 46 20 chr6 44963460 44963612 -144315942 + AluJb SINE Alu 156 311 -1 279 355 30 10 chr6 44963650 44963850 -144315704 + L3 LINE CR1 1179 1382 -195 2067 114 7 0 chr6 44963866 44964174 -144315380 + AluSx SINE Alu 1 310 -2 266 238 24 24 chr6 44964212 44964296 -144315258 - L1ME4a LINE L1 -65 6056 5973 1917 129 6 10 chr6 44964296 44964607 -144314947 - AluSx SINE Alu 0 312 3 1106 147 0 0 chr6 44964609 44964786 -144314768 - AluSc SINE Alu -14 295 119 2768 119 9 14 chr6 44964910 44965330 -144314224 - LTR51 LTR ERV1 0 671 254 821 118 8 24 chr6 44965331 44965458 -144314096 + AluJo SINE Alu 10 134 -178 2327 87 3 0 chr6 44965478 44965787 -144313767 + AluSp SINE Alu 1 310 -3 1321 158 47 24 chr6 44965787 44966040 -144313514 - LTR51 LTR ERV1 -412 259 1 749 282 12 2 chr6 44966048 44966276 -144313278 - L1ME4a LINE L1 -287 5834 5603 24 67 0 0 chr6 44966284 44966329 -144313225 + AT_rich Low_complexity Low_complexity 1 45 0 1584 123 8 4 chr6 44966390 44966626 -144312928 - AluY SINE Alu -17 294 58 2219 87 11 0 chr6 44966670 44966957 -144312597 + AluY SINE Alu 1 290 -21 1071 94 0 0 chr6 44966967 44967105 -144312449 + AluSq/x SINE Alu 1 138 -175 32836 82 8 11 chr6 44967107 44971579 -144307975 + L1P LINE L1 16 4476 -1670 1187 93 12 0 chr6 44971579 44971741 -144307813 - AluSg/x SINE Alu -15 295 132 11609 45 23 0 chr6 44971741 44973941 -144305613 - L1PA6 LINE L1 -2 6152 3920 485 108 0 0 chr6 44973942 44974007 -144305547 - MER49 LTR ERV1 -130 793 729 1045 52 0 22 chr6 44974007 44974141 -144305413 - AluY SINE Alu -171 140 10 954 121 0 0 chr6 44974141 44974282 -144305272 - FLAM_C SINE Alu -1 142 2 2129 125 13 3 chr6 44974284 44974597 -144304957 - MER49 LTR ERV1 -607 316 1 6703 32 13 194 chr6 44974870 44976136 -144303418 + SVA Other Other 11 1047 -339 218 328 0 0 chr6 44976493 44976551 -144303003 + polypurine Low_complexity Low_complexity 2 59 0 2084 116 3 0 chr6 44976563 44976866 -144302688 + AluSx SINE Alu 2 305 -7 465 211 21 0 chr6 44977353 44977448 -144302106 + MIR3 SINE MIR 96 192 -16 24 0 0 0 chr6 44977680 44977704 -144301850 + GC_rich Low_complexity Low_complexity 1 24 0 1342 164 66 36 chr6 44980423 44980697 -144298857 - AluJo SINE Alu -7 305 24 2384 76 0 10 chr6 44981007 44981321 -144298233 - AluY SINE Alu 0 311 1 453 216 135 0 chr6 44982529 44982640 -144296914 + L2 LINE L2 3188 3313 0 180 0 0 0 chr6 44982727 44982747 -144296807 + (TA)n Simple_repeat Simple_repeat 2 21 0 2239 95 0 0 chr6 44982747 44983051 -144296503 - AluSq SINE Alu -9 304 1 2216 110 0 0 chr6 44983051 44983350 -144296204 - AluSq SINE Alu -14 299 1 330 191 155 0 chr6 44983353 44983437 -144296117 - L2 LINE L2 -12 3301 3205 2572 36 0 0 chr6 44984165 44984467 -144295087 - AluY SINE Alu -9 302 1 1383 117 45 9 chr6 44984510 44984732 -144294822 + MER30 DNA MER1_type 1 230 0 453 198 37 0 chr6 44984740 44984821 -144294733 - AluJo SINE Alu -111 201 118 2247 118 0 0 chr6 44984871 44985184 -144294370 - AluSq SINE Alu 0 313 1 3105 172 12 0 chr6 44985184 44985755 -144293799 - L1 LINE L1 -779 5367 4790 2132 106 0 19 chr6 44985755 44986067 -144293487 - AluSx SINE Alu -4 308 3 366 83 21 188 chr6 44986112 44986156 -144293398 - Charlie1 DNA MER1_type 0 2761 2740 2374 75 0 0 chr6 44986156 44986462 -144293092 - AluY SINE Alu 0 311 6 366 83 21 188 chr6 44986462 44986513 -144293041 - Charlie1 DNA MER1_type -21 2740 2682 826 140 21 14 chr6 44986546 44986689 -144292865 - Charlie1 DNA MER1_type -714 2047 1904 1615 176 0 29 chr6 44986692 44987004 -144292550 - AluJo SINE Alu -9 303 1 1535 184 10 19 chr6 44987004 44987313 -144292241 - AluJo SINE Alu -6 306 1 2070 96 0 7 chr6 44987320 44987626 -144291928 - AluSg SINE Alu 0 304 1 328 178 89 10 chr6 44987626 44987727 -144291827 - Charlie1 DNA MER1_type -1101 1660 1552 * 1052 235 110 64 chr6 44987717 44988172 -144291382 - MLT1F LTR MaLR -65 477 2 270 273 0 0 chr6 44988445 44988511 -144291043 - L3b LINE CR1 -189 1394 1329 1302 148 106 84 chr6 44989038 44989094 -144290460 + MER47A DNA MER2_type 1 54 -2269 2454 56 3 0 chr6 44989094 44989396 -144290158 + AluY SINE Alu 1 303 -8 1302 148 106 84 chr6 44989396 44989444 -144290110 + MER47A DNA MER2_type 54 99 -2224 2038 106 17 0 chr6 44989444 44989737 -144289817 - AluSq SINE Alu -11 302 5 1302 148 106 84 chr6 44989737 44989989 -144289565 + MER47A DNA MER2_type 99 366 0 755 157 0 0 chr6 44990365 44990480 -144289074 + AluSx SINE Alu 56 170 -142 1525 149 0 0 chr6 44990486 44990721 -144288833 + AluJb SINE Alu 75 309 -3 2470 64 0 0 chr6 44990742 44991053 -144288501 - AluY SINE Alu 0 311 1 362 47 0 0 chr6 44991078 44991121 -144288433 - MER57B LTR ERV1 -66 368 326 1193 174 18 18 chr6 44991699 44991917 -144287637 - MER20 DNA MER1_type -1 218 1 2116 111 7 0 chr6 44992681 44992979 -144286575 - AluSx SINE Alu -12 300 1 2261 182 46 40 chr6 44993125 44993626 -144285928 + MLT1D LTR MaLR 2 505 0 958 259 179 10 chr6 44993937 44994351 -144285203 - L2 LINE L2 -1 3312 2829 837 231 82 0 chr6 44994878 44995073 -144284481 - MIR SINE MIR -40 222 12 415 249 78 28 chr6 44995563 44995728 -144283826 - MIR SINE MIR -63 145 9 259 188 297 50 chr6 44996323 44996424 -144283130 + MIR SINE MIR 134 259 -3 777 167 0 47 chr6 44996508 44996658 -144282896 + FLAM_C SINE Alu 1 143 0 378 333 98 22 chr6 44997130 44997355 -144282199 - L1ME4a LINE L1 -6 6115 5874 298 163 43 33 chr6 44998962 44999054 -144280500 - L1MB7 LINE L1 -2 6176 6084 1860 178 134 10 chr6 44999074 44999574 -144279980 - L1MB7 LINE L1 -25 6159 5598 2000 104 0 19 chr6 44999574 44999843 -144279711 - AluSx SINE Alu -10 302 39 2387 74 23 3 chr6 44999852 45000151 -144279403 - AluSc SINE Alu -4 305 1 433 189 167 77 chr6 45000189 45000267 -144279287 - L1MC4a LINE L1 -1899 5909 5839 2495 67 3 29 chr6 45000267 45000582 -144278972 - AluY SINE Alu -4 307 1 433 189 167 77 chr6 45000582 45000638 -144278916 - L1MC4a LINE L1 -1969 5839 5789 2181 132 3 0 chr6 45000638 45000933 -144278621 - AluSx SINE Alu -16 296 1 433 189 167 77 chr6 45000933 45001019 -144278535 - L1MC4a LINE L1 -2019 5789 5668 541 99 129 5 chr6 45001253 45001349 -144278205 - MLT1F LTR MaLR 0 530 447 282 292 0 14 chr6 45001332 45001404 -144278150 - MLT1F LTR MaLR -465 77 7 * 2136 133 7 0 chr6 45001698 45001992 -144277562 - AluSx SINE Alu -16 296 1 212 341 134 6 chr6 45001993 45002172 -144277382 - MIR SINE MIR -43 219 18 277 217 109 11 chr6 45002592 45002684 -144276870 - MIR SINE MIR -81 181 81 859 242 148 14 chr6 45002684 45003110 -144276444 - MLT1H LTR MaLR 0 549 5 377 286 51 34 chr6 45003557 45003732 -144275822 + MER5B DNA MER1_type 1 178 0 244 184 53 61 chr6 45004252 45004366 -144275188 - L1ME4a LINE L1 -33 6088 5976 1358 233 24 78 chr6 45004431 45004928 -144274626 - L1MB7 LINE L1 -9 6175 5706 278 311 115 33 chr6 45004947 45005069 -144274485 + L2 LINE L2 3159 3290 -23 329 206 58 31 chr6 45005110 45005213 -144274341 - L1MB7 LINE L1 -520 5601 5510 204 318 71 12 chr6 45006292 45006377 -144273177 - L2 LINE L2 -21 3251 3162 378 216 20 39 chr6 45006803 45006905 -144272649 + MLT1C LTR MaLR 1 100 -367 553 259 195 0 chr6 45007120 45007305 -144272249 + MIR SINE MIR 9 229 -33 2365 100 0 3 chr6 45007312 45007621 -144271933 - AluSx SINE Alu -4 308 1 796 256 40 28 chr6 45007869 45008023 -144271531 + MIR SINE MIR 6 166 -96 1608 139 31 90 chr6 45008023 45008411 -144271143 - MLT1A1 LTR MaLR 0 365 1 796 256 40 28 chr6 45008411 45008506 -144271048 + MIR SINE MIR 166 258 -4 1903 176 3 10 chr6 45008800 45009112 -144270442 - AluJb SINE Alu -2 310 1 2640 58 0 3 chr6 45009518 45009827 -144269727 + AluY SINE Alu 1 308 -3 212 332 105 22 chr6 45009865 45010094 -144269460 + L2 LINE L2 2289 2536 -778 301 238 200 0 chr6 45010161 45010266 -144269288 - L1MEd LINE L1 -3873 2256 2131 2480 88 7 0 chr6 45010352 45010658 -144268896 - AluSx SINE Alu -4 308 1 1769 182 3 13 chr6 45010693 45010995 -144268559 - AluJo SINE Alu -13 299 1 376 160 130 0 chr6 45011256 45011356 -144268198 - L1MD3 LINE L1 -5 7990 7878 394 278 101 56 chr6 45011356 45011554 -144268000 - L1MEd LINE L1 -4902 1217 1011 271 259 90 37 chr6 45011554 45011743 -144267811 - L1MEd LINE L1 -5325 794 596 2446 81 0 0 chr6 45011882 45012179 -144267375 + AluY SINE Alu 2 298 -13 443 311 59 0 chr6 45012645 45012780 -144266774 + MIR SINE MIR 1 143 -119 2344 90 0 0 chr6 45013014 45013304 -144266250 - AluSc SINE Alu -19 290 1 2357 100 7 0 chr6 45014235 45014544 -144265010 - AluSq SINE Alu -2 311 1 236 263 59 102 chr6 45014615 45014733 -144264821 - L2 LINE L2 -19 3294 3182 325 381 78 19 chr6 45014844 45015114 -144264440 - L3 LINE CR1 -1269 308 23 501 270 85 30 chr6 45015329 45015529 -144264025 - MLT1J LTR MaLR -102 409 199 2174 120 3 19 chr6 45015619 45015936 -144263618 - AluJb SINE Alu 0 312 1 180 353 74 25 chr6 45015936 45016058 -144263496 + MIR SINE MIR 122 249 -13 687 217 210 66 chr6 45016517 45016959 -144262595 - MLT1J LTR MaLR -4 507 2 327 261 101 0 chr6 45017907 45018026 -144261528 + MIR SINE MIR 84 214 -48 240 143 0 0 chr6 45018032 45018074 -144261480 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3327 89 19 115 chr6 45018465 45019749 -144259805 + SVA Other Other 322 868 -520 7219 58 8 43 chr6 45019814 45020803 -144258751 + SVA Other Other 433 1386 0 207 0 0 0 chr6 45021458 45021481 -144258073 + (T)n Simple_repeat Simple_repeat 1 23 0 1138 168 0 0 chr6 45021487 45021654 -144257900 + FRAM SINE Alu 1 167 -9 300 286 32 84 chr6 45022713 45022856 -144256698 - L1MC4a LINE L1 -1851 5957 5821 2359 117 0 0 chr6 45022856 45023164 -144256390 - AluSx SINE Alu -4 308 1 2129 122 7 0 chr6 45023574 45023862 -144255692 + AluSx SINE Alu 1 290 -22 196 286 118 17 chr6 45023994 45024113 -144255441 - L2 LINE L2 -2 3270 3140 273 163 0 0 chr6 45024121 45024170 -144255384 + L1ME3 LINE L1 5933 5981 -181 912 143 6 56 chr6 45024174 45024335 -144255219 + FRAM SINE Alu 1 153 -23 334 221 23 161 chr6 45024339 45024441 -144255113 + L1ME3 LINE L1 5975 6033 -129 2451 92 0 3 chr6 45024441 45024755 -144254799 - AluSq SINE Alu 0 313 1 334 221 23 161 chr6 45024755 45024869 -144254685 + L1ME3 LINE L1 6033 6161 -1 210 143 0 0 chr6 45025816 45025851 -144253703 + (A)n Simple_repeat Simple_repeat 1 35 0 1774 171 6 19 chr6 45025883 45026198 -144253356 + AluJo SINE Alu 1 311 -1 416 209 0 0 chr6 45026418 45026509 -144253045 - L1MC4 LINE L1 -26 8016 7926 * 498 270 35 13 chr6 45026506 45026699 -144252855 - L1MC4 LINE L1 -359 7636 7347 182 373 0 0 chr6 45026851 45026926 -144252628 + MIR SINE MIR 33 107 -101 476 288 14 7 chr6 45026939 45027078 -144252476 - MIR SINE MIR -121 141 2 2162 125 0 39 chr6 45029631 45029942 -144249612 + AluSx SINE Alu 1 299 -13 400 297 27 21 chr6 45030014 45030209 -144249345 - MIR SINE MIR -56 206 11 389 361 30 6 chr6 45030329 45030495 -144249059 + L3 LINE CR1 656 825 -752 185 246 82 0 chr6 45030681 45030742 -144248812 + L3 LINE CR1 1156 1221 -356 630 234 153 5 chr6 45030894 45031103 -144248451 + MIR SINE MIR 2 241 -21 2598 74 0 0 chr6 45031335 45031646 -144247908 - AluY SINE Alu 0 311 1 25 31 0 0 chr6 45031659 45031691 -144247863 + AT_rich Low_complexity Low_complexity 1 32 0 2289 112 0 0 chr6 45031691 45031986 -144247568 + AluY SINE Alu 1 295 -16 499 132 0 0 chr6 45031987 45032063 -144247491 - FLAM_A SINE Alu -27 115 40 1900 248 181 25 chr6 45032811 45033935 -144245619 - L2 LINE L2 -83 3230 1939 1987 142 14 3 chr6 45033974 45034263 -144245291 + AluSx SINE Alu 1 292 -20 2313 112 10 0 chr6 45034263 45034566 -144244988 + AluSx SINE Alu 1 306 -6 1748 158 24 31 chr6 45034566 45034857 -144244697 + AluSx SINE Alu 1 289 -23 730 204 12 18 chr6 45034949 45035116 -144244438 - L1ME4a LINE L1 -263 5858 5693 309 98 0 0 chr6 45035571 45035612 -144243942 - tRNA-Lys-AAG tRNA tRNA -34 42 2 2233 132 7 0 chr6 45035660 45035964 -144243590 + AluJb SINE Alu 1 306 -6 224 202 64 75 chr6 45036226 45036320 -144243234 - MIR3 SINE MIR -8 200 108 257 360 60 5 chr6 45036477 45036677 -144242877 + L2 LINE L2 2605 2815 -499 253 176 0 59 chr6 45036909 45036960 -144242594 + L2 LINE L2 3266 3313 0 467 296 30 12 chr6 45037266 45037435 -144242119 - L1ME4a LINE L1 -10 6111 5940 251 238 95 9 chr6 45038403 45038508 -144241046 - MIR SINE MIR -13 249 136 338 263 0 12 chr6 45038689 45038769 -144240785 - L2 LINE L2 0 3313 3235 808 228 74 0 chr6 45039307 45039496 -144240058 + MIR SINE MIR 6 208 -54 423 0 0 0 chr6 45040096 45040143 -144239411 + (TG)n Simple_repeat Simple_repeat 2 48 0 1834 134 73 0 chr6 45040202 45040477 -144239077 - AluSx SINE Alu -13 299 5 2316 98 3 0 chr6 45040775 45041070 -144238484 - AluSx SINE Alu -14 298 3 1958 147 17 0 chr6 45041072 45041365 -144238189 - AluSx SINE Alu -14 298 1 788 120 3 14 chr6 45042694 45042859 -144236695 + L1PA3 LINE L1 6032 6168 0 21 36 0 0 chr6 45042899 45042927 -144236627 + AT_rich Low_complexity Low_complexity 1 28 0 387 317 91 41 chr6 45043146 45043565 -144235989 - MLT1J LTR MaLR -71 440 1 249 267 99 37 chr6 45043734 45043895 -144235659 - Charlie8 DNA MER1_type -2132 285 115 860 204 158 11 chr6 45043914 45044174 -144235380 - L1MD3 LINE L1 -15 7980 7683 29 0 0 0 chr6 45044336 45044365 -144235189 + AT_rich Low_complexity Low_complexity 1 29 0 1867 171 10 3 chr6 45044365 45044674 -144234880 + AluJo SINE Alu 1 311 -1 1035 140 17 0 chr6 45044709 45044888 -144234666 - L1PA13 LINE L1 -14 6149 5968 675 179 26 39 chr6 45044946 45045102 -144234452 + MER5B DNA MER1_type 11 164 -14 220 325 47 24 chr6 45045121 45045290 -144234264 - L2 LINE L2 -831 2483 2311 280 232 139 88 chr6 45046454 45046648 -144232906 + MIR SINE MIR 2 205 -57 2262 121 0 7 chr6 45047068 45047373 -144232181 - AluSx SINE Alu -9 303 1 2225 104 17 7 chr6 45048824 45049121 -144230433 - AluSx SINE Alu -12 300 1 596 311 62 9 chr6 45049126 45049351 -144230203 + L1MC4a LINE L1 5603 5839 -1969 235 293 35 35 chr6 45049652 45049768 -144229786 + MIR SINE MIR 23 138 -70 326 288 54 0 chr6 45050270 45050381 -144229173 - L2 LINE L2 -6 3266 3150 1973 137 54 61 chr6 45050887 45050921 -144228633 - MLT2D LTR ERVL 0 414 381 225 0 0 0 chr6 45050921 45050946 -144228608 + (TG)n Simple_repeat Simple_repeat 2 26 0 1973 137 54 61 chr6 45050946 45051242 -144228312 - MLT2D LTR ERVL -33 381 85 2247 75 39 13 chr6 45051242 45051547 -144228007 + AluSq SINE Alu 1 313 0 1973 137 54 61 chr6 45051547 45051625 -144227929 - MLT2D LTR ERVL -329 85 8 279 226 38 75 chr6 45051638 45051744 -144227810 + MIR SINE MIR 95 196 -66 207 214 0 0 chr6 45052006 45052048 -144227506 + T-rich Low_complexity Low_complexity 1 42 0 1776 130 0 83 chr6 45052093 45052446 -144227108 - AluJb SINE Alu 0 312 1 1304 170 130 30 chr6 45052446 45052716 -144226838 - AluJo SINE Alu -5 297 1 1935 70 0 27 chr6 45052716 45052972 -144226582 - AluSc SINE Alu -60 249 1 286 257 128 46 chr6 45053654 45053763 -144225791 - L2 LINE L2 -87 3226 3109 299 278 67 0 chr6 45055102 45055192 -144224362 - MIR SINE MIR -107 155 60 2320 101 0 0 chr6 45055962 45056269 -144223285 - AluSx SINE Alu -5 307 1 1083 82 0 0 chr6 45056270 45056405 -144223149 - AluSq/x SINE Alu -177 135 1 2171 82 0 7 chr6 45056453 45056779 -144222775 - AluSq SINE Alu 0 327 4 217 217 43 0 chr6 45057197 45057243 -144222311 + MIR SINE MIR 212 259 -3 382 229 229 34 chr6 45057964 45058078 -144221476 - MIR SINE MIR -2 260 170 1965 122 6 42 chr6 45058078 45058389 -144221165 + AluJo SINE Alu 1 300 -12 2265 92 3 16 chr6 45058389 45058704 -144220850 + AluSx SINE Alu 1 311 -1 382 229 229 34 chr6 45058704 45058793 -144220761 - MIR SINE MIR -91 171 16 197 229 104 0 chr6 45058835 45058883 -144220671 - L2 LINE L2 -58 3255 3203 2272 88 0 3 chr6 45060133 45060430 -144219124 + AluSx SINE Alu 1 296 -16 553 279 209 0 chr6 45060532 45060747 -144218807 - MIR SINE MIR -1 261 2 313 362 0 7 chr6 45061384 45061536 -144218018 + CT-rich Low_complexity Low_complexity 1 151 0 439 279 58 6 chr6 45063805 45063977 -144215577 - LTR33A LTR ERVL -13 510 330 273 343 145 0 chr6 45064249 45064415 -144215139 - LTR50 LTR ERVL -605 190 1 2533 73 14 4 chr6 45064691 45065261 -144214293 - LTR10E LTR ERV1 0 633 1 422 249 122 22 chr6 45065518 45065699 -144213855 - MIR SINE MIR -49 213 15 225 196 0 0 chr6 45065817 45065873 -144213681 + L1MC3 LINE L1 7722 7777 -8 2438 66 0 0 chr6 45065881 45066186 -144213368 + AluY SINE Alu 1 305 -6 1837 152 30 3 chr6 45066213 45066516 -144213038 + AluSx SINE Alu 1 311 -1 2225 108 0 0 chr6 45066519 45066826 -144212728 - AluSx SINE Alu -5 307 1 2186 105 3 3 chr6 45066963 45067268 -144212286 + AluSc SINE Alu 1 305 -4 336 279 59 29 chr6 45067304 45067440 -144212114 + L1ME LINE L1 5494 5633 -537 864 249 144 88 chr6 45067470 45067879 -144211675 + LTR16A LTR ERVL 19 450 0 1801 110 3 43 chr6 45067979 45068099 -144211455 + AluJo SINE Alu 6 129 -183 1872 113 3 57 chr6 45068099 45068429 -144211125 - AluSq SINE Alu 0 314 1 1801 110 3 43 chr6 45068429 45068606 -144210948 + AluJo SINE Alu 129 292 -20 772 226 99 69 chr6 45068714 45068746 -144210808 + L1MC/D LINE L1 5254 5284 -2524 2337 96 0 0 chr6 45068746 45069058 -144210496 + AluSq SINE Alu 1 312 -1 772 226 99 69 chr6 45069058 45069150 -144210404 + L1MC/D LINE L1 5284 5372 -2436 2273 96 3 6 chr6 45069150 45069464 -144210090 + AluSq SINE Alu 1 313 0 772 226 99 69 chr6 45069464 45069518 -144210036 + L1MC/D LINE L1 5372 5423 -2385 1760 168 10 0 chr6 45069518 45069816 -144209738 - AluJo SINE Alu -11 301 1 772 226 99 69 chr6 45069816 45069997 -144209557 + L1MC/D LINE L1 5423 5626 -2182 240 256 15 131 chr6 45070221 45070358 -144209196 - MIR3 SINE MIR -3 205 85 250 257 0 14 chr6 45070407 45070477 -144209077 - MIR SINE MIR -23 239 171 270 326 62 0 chr6 45070479 45070623 -144208931 - LTR67 LTR ERVL -2 555 403 272 260 87 19 chr6 45072063 45072167 -144207387 - MIR3 SINE MIR -22 186 76 257 270 40 0 chr6 45072265 45072339 -144207215 + L2 LINE L2 3201 3277 -36 1996 117 31 0 chr6 45072645 45072936 -144206618 - AluSx SINE Alu -12 300 1 296 183 113 0 chr6 45073572 45073643 -144205911 + MER103 DNA DNA 15 93 -73 1409 187 4 0 chr6 45073692 45073933 -144205621 + AluJb SINE Alu 1 242 -70 330 111 0 19 chr6 45073997 45074051 -144205503 + MER50 LTR ERV1 502 554 -180 2264 106 6 0 chr6 45074094 45074405 -144205149 - AluSq SINE Alu 0 313 1 368 254 42 0 chr6 45074868 45074986 -144204568 - Charlie2 DNA MER1_type -8 2854 2732 2372 89 0 0 chr6 45074986 45075289 -144204265 - AluSg SINE Alu -7 303 1 1755 143 59 3 chr6 45075502 45075788 -144203766 - AluJo SINE Alu -10 302 1 2259 77 3 13 chr6 45075836 45076134 -144203420 - AluSp SINE Alu -18 295 1 569 146 0 0 chr6 45076161 45076243 -144203311 - AluSp/q SINE Alu -15 298 217 501 192 10 10 chr6 45076256 45076355 -144203199 + MER96B DNA MER1_type? 319 417 0 204 267 0 0 chr6 45076821 45076866 -144202688 + G-rich Low_complexity Low_complexity 6 50 0 667 269 81 40 chr6 45076873 45077056 -144202498 - MIR SINE MIR -3 259 64 779 182 156 0 chr6 45077056 45077210 -144202344 - MER45A DNA AcHobo 0 178 1 667 269 81 40 chr6 45077210 45077249 -144202305 - MIR SINE MIR -198 64 28 2252 90 7 0 chr6 45077322 45077623 -144201931 - AluSp SINE Alu -10 303 1 244 306 88 112 chr6 45077642 45077694 -144201860 - MIR SINE MIR -77 185 133 1892 138 21 0 chr6 45077694 45077983 -144201571 - AluSq SINE Alu -18 295 1 244 306 88 112 chr6 45077983 45078100 -144201454 - MIR SINE MIR -129 133 20 739 241 116 10 chr6 45078932 45079131 -144200423 + MIR SINE MIR 36 255 -7 2251 104 0 0 chr6 45079136 45079443 -144200111 - AluSg SINE Alu -3 307 1 1530 155 121 0 chr6 45079516 45079839 -144199715 - L1MB7 LINE L1 0 6184 5823 2332 74 0 13 chr6 45079839 45080148 -144199406 - AluY SINE Alu -6 305 1 838 136 15 0 chr6 45080149 45080281 -144199273 - AluJb SINE Alu -178 134 1 471 223 0 0 chr6 45080282 45080376 -144199178 - MER33 DNA MER1_type -228 96 3 2032 93 4 0 chr6 45080401 45080671 -144198883 - AluSg SINE Alu -17 293 23 2159 105 7 0 chr6 45080675 45080969 -144198585 - AluSx SINE Alu -16 296 1 2331 84 3 0 chr6 45081912 45082211 -144197343 + AluSq SINE Alu 1 300 -13 2030 158 71 45 chr6 45082822 45082890 -144196664 - Tigger2a DNA MER2_type -2274 434 369 1760 120 52 0 chr6 45082890 45083183 -144196371 - AluJb SINE Alu 0 307 1 2030 158 71 45 chr6 45083183 45083536 -144196018 - Tigger2a DNA MER2_type -2339 369 1 259 250 0 0 chr6 45083649 45083705 -144195849 - MIR SINE MIR -89 173 118 2099 101 10 7 chr6 45083705 45084013 -144195541 + AluJb SINE Alu 1 309 -3 2091 117 0 7 chr6 45084013 45084312 -144195242 + AluSq SINE Alu 1 297 -16 1916 145 0 0 chr6 45084322 45084651 -144194903 + AluSx SINE Alu 12 312 0 519 187 84 65 chr6 45084690 45084845 -144194709 - MER91B DNA MER1_type -32 158 1 221 212 8 136 chr6 45085106 45085224 -144194330 - MER91B DNA MER1_type -87 103 1 390 235 13 3 chr6 45085761 45085915 -144193639 - Charlie1b DNA MER1_type -323 200 6 501 262 331 0 chr6 45086253 45086699 -144192855 + L2 LINE L2 2714 3308 -5 279 256 128 8 chr6 45088169 45088302 -144191252 - Charlie7 DNA MER1_type -17 2595 2447 893 234 134 21 chr6 45088344 45088868 -144190686 - Charlie7 DNA MER1_type -1941 671 56 301 190 38 13 chr6 45089015 45089094 -144190460 + Charlie4 DNA MER1_type 1822 1902 -59 2022 121 13 26 chr6 45089197 45089510 -144190044 - AluSg SINE Alu -1 309 1 364 355 54 16 chr6 45090020 45090206 -144189348 - L2 LINE L2 -1 3271 3079 2007 141 0 10 chr6 45090447 45090753 -144188801 - AluSx SINE Alu -9 303 1 2280 81 7 0 chr6 45091660 45091955 -144187599 - AluSp SINE Alu -16 297 1 1638 136 37 20 chr6 45092269 45092563 -144186991 - AluJo SINE Alu -13 299 1 544 222 56 0 chr6 45093782 45093908 -144185646 - FLAM_A SINE Alu -9 133 1 1916 138 0 14 chr6 45093911 45094227 -144185327 - AluSx SINE Alu 0 312 1 1952 112 4 4 chr6 45095278 45095554 -144184000 - AluSx SINE Alu -32 280 5 1479 146 86 8 chr6 45096065 45096333 -144183221 - AluSg SINE Alu -16 294 6 807 113 60 15 chr6 45096333 45096466 -144183088 - AluJb SINE Alu -173 139 1 324 325 13 13 chr6 45096613 45096770 -144182784 - L1MC4a LINE L1 -1841 5967 5811 2470 57 0 0 chr6 45096790 45097089 -144182465 - AluY SINE Alu -12 299 1 500 263 25 44 chr6 45097092 45097252 -144182302 + MIR SINE MIR 102 258 -4 2232 95 3 0 chr6 45097254 45097548 -144182006 - AluSx SINE Alu -16 296 2 588 310 27 5 chr6 45097709 45097896 -144181658 - MIR SINE MIR -52 210 20 2178 127 0 0 chr6 45098161 45098469 -144181085 + AluSg SINE Alu 1 308 -2 219 282 164 80 chr6 45098535 45098806 -144180748 - L2 LINE L2 -1 3312 2986 2107 77 20 34 chr6 45098806 45099104 -144180450 - AluSg SINE Alu -14 296 3 219 282 164 80 chr6 45099104 45099283 -144180271 - L2 LINE L2 -327 2986 2824 21 36 0 0 chr6 45099335 45099363 -144180191 + AT_rich Low_complexity Low_complexity 1 28 0 2491 55 3 0 chr6 45099372 45099679 -144179875 - AluY SINE Alu -3 308 1 814 129 0 0 chr6 45099679 45099795 -144179759 - AluJo/FLAM SINE Alu -196 116 1 562 221 6 87 chr6 45099796 45099868 -144179686 - MIR SINE MIR -37 225 149 2474 52 0 7 chr6 45099868 45100176 -144179378 - AluY SINE Alu -5 306 1 562 221 6 87 chr6 45100176 45100275 -144179279 - MIR SINE MIR -113 149 68 222 37 0 0 chr6 45100302 45100329 -144179225 + (TATG)n Simple_repeat Simple_repeat 4 30 0 2015 105 0 11 chr6 45100334 45100619 -144178935 - AluSx SINE Alu -30 282 1 235 362 58 16 chr6 45100821 45101009 -144178545 - L2 LINE L2 -551 2763 2568 237 261 14 34 chr6 45101021 45101176 -144178378 + MIR SINE MIR 111 262 0 1428 172 61 20 chr6 45101699 45101995 -144177559 - AluJb SINE Alu -4 308 1 1923 90 90 0 chr6 45102247 45102525 -144177029 - AluSx SINE Alu -9 303 1 295 232 112 24 chr6 45104945 45105070 -144174484 - MIR SINE MIR -101 161 26 630 213 140 0 chr6 45106284 45106434 -144173120 - AluSp SINE Alu -16 297 127 1976 87 28 7 chr6 45106597 45106885 -144172669 - AluY SINE Alu -17 294 1 858 148 35 0 chr6 45106934 45107076 -144172478 + AluSg/x SINE Alu 132 278 -32 219 252 138 41 chr6 45107570 45107693 -144171861 + MIR3 SINE MIR 36 170 -38 315 127 119 12 chr6 45107706 45107826 -144171728 + MER53 DNA DNA 1 189 0 2056 91 10 42 chr6 45107972 45108280 -144171274 - AluY SINE Alu -13 298 1 189 0 0 0 chr6 45108772 45108793 -144170761 + (T)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chr6 45108867 45108910 -144170644 + AT_rich Low_complexity Low_complexity 1 43 0 360 283 131 0 chr6 45111653 45111752 -144167802 - MER91A DNA MER1_type -83 113 2 351 248 0 88 chr6 45111789 45111926 -144167628 - L1ME4a LINE L1 -54 6067 5943 2173 105 7 0 chr6 45111967 45112263 -144167291 - AluSq SINE Alu -15 298 1 1582 152 0 55 chr6 45112981 45113291 -144166263 - AluJo SINE Alu -11 301 9 283 195 166 3 chr6 45113826 45113909 -144165645 + MIR SINE MIR 33 129 -79 2283 102 0 0 chr6 45114015 45114320 -144165234 - AluSg SINE Alu -5 305 1 226 207 0 35 chr6 45115269 45115327 -144164227 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr6 45115520 45115541 -144164013 + GC_rich Low_complexity Low_complexity 1 21 0 780 164 33 0 chr6 45115647 45115769 -144163785 - FLAM_A SINE Alu -6 127 2 535 234 76 63 chr6 45115842 45116000 -144163554 + MER91A DNA MER1_type 1 160 -36 601 259 146 14 chr6 45116698 45116918 -144162636 - MIR SINE MIR -1 261 13 2097 87 4 4 chr6 45117131 45117406 -144162148 - AluSx SINE Alu -16 296 22 775 215 0 0 chr6 45117773 45117908 -144161646 + AluJo SINE Alu 2 136 -176 180 277 191 0 chr6 45118210 45118304 -144161250 + L2 LINE L2 3202 3313 0 196 361 57 10 chr6 45118654 45118848 -144160706 + L2 LINE L2 2549 2751 -563 467 269 31 0 chr6 45118948 45119078 -144160476 + MIR SINE MIR 63 196 -66 343 311 4 114 chr6 45119117 45119397 -144160157 + L2 LINE L2 2936 3184 -88 338 207 107 95 chr6 45122023 45122192 -144157362 + MIR SINE MIR 79 249 -13 1797 157 6 13 chr6 45122281 45122416 -144157138 + AluSx SINE Alu 1 135 -177 2200 100 10 0 chr6 45122416 45122716 -144156838 + AluSg SINE Alu 3 305 -5 1797 157 6 13 chr6 45122716 45122893 -144156661 + AluSx SINE Alu 135 311 -1 2033 78 0 109 chr6 45123852 45124199 -144155355 - AluSg SINE Alu -1 309 1 1082 236 5 0 chr6 45124303 45124511 -144155043 - MIR SINE MIR -21 241 33 25 0 0 0 chr6 45124877 45124902 -144154652 + AT_rich Low_complexity Low_complexity 1 25 0 636 127 103 56 chr6 45124911 45125037 -144154517 + AluSq/x SINE Alu 5 136 -177 22 0 0 0 chr6 45125355 45125377 -144154177 + GC_rich Low_complexity Low_complexity 1 22 0 221 279 13 57 chr6 45126464 45126622 -144152932 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 574 105 0 0 chr6 45128331 45128417 -144151137 - L1MB4 LINE L1 -1 6179 6094 255 240 248 16 chr6 45130194 45130315 -144149239 - MIR3 SINE MIR -21 187 39 805 112 0 0 chr6 45131156 45131263 -144148291 - AluSg SINE Alu -202 108 2 22 0 0 0 chr6 45131311 45131333 -144148221 + AT_rich Low_complexity Low_complexity 1 22 0 2210 102 3 6 chr6 45131576 45131890 -144147664 + AluSq SINE Alu 1 313 0 592 165 0 0 chr6 45132136 45132233 -144147321 - AluJo SINE Alu -7 305 209 22 35 0 0 chr6 45132251 45132280 -144147274 + AT_rich Low_complexity Low_complexity 1 29 0 1164 189 14 0 chr6 45132315 45132532 -144147022 - AluJo SINE Alu -92 220 1 265 120 0 0 chr6 45132533 45132583 -144146971 - Charlie2 DNA MER1_type -63 2799 2750 1030 107 7 0 chr6 45132597 45132737 -144146817 + AluJb SINE Alu 1 141 -171 238 86 52 35 chr6 45132754 45132812 -144146742 + A-rich Low_complexity Low_complexity 2 60 0 2080 136 0 13 chr6 45132851 45133167 -144146387 - AluJb SINE Alu 0 312 1 1556 141 11 38 chr6 45133368 45133631 -144145923 + AluSx SINE Alu 4 259 -53 382 208 148 0 chr6 45133743 45133844 -144145710 + L2 LINE L2 3192 3307 -6 584 212 26 0 chr6 45133846 45133959 -144145595 + FLAM_C SINE Alu 2 117 -26 228 268 186 0 chr6 45134057 45134154 -144145400 - L2 LINE L2 0 3272 3158 326 324 29 0 chr6 45134813 45134915 -144144639 + MIR SINE MIR 87 191 -71 835 228 22 0 chr6 45134985 45135169 -144144385 - MIR SINE MIR -72 190 3 187 156 0 0 chr6 45136458 45136490 -144143064 - MIR SINE MIR -93 115 84 623 281 176 1 chr6 45136756 45136978 -144142576 - MIR SINE MIR -1 261 1 23 33 0 0 chr6 45137772 45137802 -144141752 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 45137826 45137863 -144141691 + AT_rich Low_complexity Low_complexity 1 37 0 487 272 89 17 chr6 45137928 45138108 -144141446 - MIR SINE MIR -58 204 12 311 299 0 17 chr6 45138615 45138792 -144140762 + (CTG)n Simple_repeat Simple_repeat 2 175 0 189 216 0 0 chr6 45138953 45138990 -144140564 - MIR SINE MIR -108 154 118 518 256 30 0 chr6 45139492 45139625 -144139929 - L2 LINE L2 0 3313 3177 387 328 93 5 chr6 45139627 45139831 -144139723 - MIR SINE MIR -27 235 14 1669 179 45 10 chr6 45139864 45140250 -144139304 + L1MB4 LINE L1 5459 6100 -80 * 7684 139 16 80 chr6 45140249 45140724 -144138830 + L1MA4 LINE L1 3779 4283 -2017 830 144 0 38 chr6 45140724 45140856 -144138698 + AluJo SINE Alu 5 131 -171 2162 93 0 50 chr6 45140856 45141177 -144138377 + AluSq SINE Alu 1 305 -8 7684 139 16 80 chr6 45141177 45141669 -144137885 + L1MA4 LINE L1 4282 4804 -1496 861 199 0 6 chr6 45141669 45141840 -144137714 + AluJo SINE Alu 136 305 -7 7684 139 16 80 chr6 45141840 45142595 -144136959 + L1MA4 LINE L1 4804 5454 -846 2309 99 3 0 chr6 45142595 45142899 -144136655 - AluSq SINE Alu -8 305 1 7684 139 16 80 chr6 45142899 45143689 -144135865 + L1MA4 LINE L1 5454 6293 -7 386 103 16 0 chr6 45143695 45143765 -144135789 + L1MB4 LINE L1 6087 6156 -24 459 266 82 13 chr6 45145018 45145176 -144134378 - MIR3 SINE MIR -9 199 31 432 214 231 22 chr6 45147484 45147666 -144131888 - MIR SINE MIR 0 262 43 376 304 82 27 chr6 45147654 45147838 -144131716 - MIR SINE MIR -68 194 1 * 2070 113 0 0 chr6 45148261 45148634 -144130920 - AluSx SINE Alu 0 373 1 782 139 7 36 chr6 45148639 45148776 -144130778 - FLAM_C SINE Alu 0 133 1 247 265 224 20 chr6 45148777 45148924 -144130630 - MIR SINE MIR -50 212 36 229 281 124 41 chr6 45148955 45149076 -144130478 + L2 LINE L2 3133 3263 -9 453 179 66 19 chr6 45149317 45149423 -144130131 + MLT1K LTR MaLR 478 588 0 2064 103 0 4 chr6 45149614 45149909 -144129645 - AluSx SINE Alu -46 266 1 293 294 266 7 chr6 45150079 45150222 -144129332 + MIR SINE MIR 74 253 -9 436 281 143 21 chr6 45150252 45150336 -144129218 + L1ME4a LINE L1 5844 5916 -205 380 221 13 0 chr6 45150336 45150413 -144129141 - MER116 DNA Mariner 0 80 3 436 281 143 21 chr6 45150413 45150492 -144129062 + L1ME4a LINE L1 5916 5984 -137 2404 99 0 0 chr6 45150492 45150796 -144128758 - AluSq SINE Alu -9 304 1 436 281 143 21 chr6 45150796 45150831 -144128723 + L1ME4a LINE L1 5984 6013 -108 2395 102 0 3 chr6 45150831 45151145 -144128409 + AluSq SINE Alu 1 313 0 2043 117 3 20 chr6 45151152 45151434 -144128120 + AluSx SINE Alu 1 279 -33 204 40 0 0 chr6 45151434 45151459 -144128095 + (CA)n Simple_repeat Simple_repeat 1 25 0 2043 117 3 20 chr6 45151459 45151475 -144128079 + AluSx SINE Alu 279 294 -18 436 281 143 21 chr6 45151475 45151504 -144128050 + L1ME4a LINE L1 6018 6110 -11 1048 193 0 0 chr6 45151511 45151687 -144127867 - AluJb SINE Alu -6 306 131 1249 136 0 0 chr6 45151702 45151878 -144127676 + AluJb SINE Alu 124 299 -13 349 186 0 17 chr6 45151916 45151975 -144127579 + AluJ/FLAM SINE Alu 3 60 -242 488 130 0 0 chr6 45151978 45152047 -144127507 - AluJ/FLAM SINE Alu -235 77 9 1122 274 67 47 chr6 45152364 45152695 -144126859 + L2 LINE L2 2737 3069 -244 1505 174 3 93 chr6 45152695 45152879 -144126675 - AluSq SINE Alu -21 292 148 2217 105 7 3 chr6 45152879 45153174 -144126380 - AluSq SINE Alu -17 296 1 1505 174 3 93 chr6 45153174 45153310 -144126244 - AluSq SINE Alu -165 148 1 1122 274 67 47 chr6 45153310 45153555 -144125999 + L2 LINE L2 3069 3308 -5 199 315 27 0 chr6 45153629 45153702 -144125852 + MIR3 SINE MIR 105 179 -29 377 206 0 0 chr6 45154082 45154155 -144125399 - MIR SINE MIR -103 159 87 337 240 83 41 chr6 45154195 45154316 -144125238 + MER5B DNA MER1_type 14 139 -39 1805 176 14 3 chr6 45154655 45154944 -144124610 - AluJb SINE Alu -19 293 2 2415 104 0 0 chr6 45154998 45155297 -144124257 + AluSx SINE Alu 1 299 -13 254 223 179 18 chr6 45155572 45155684 -144123870 - MIR SINE MIR -56 152 23 274 297 102 55 chr6 45156270 45156506 -144123048 - L3b LINE CR1 -163 1420 1174 1682 197 0 16 chr6 45156698 45157003 -144122551 + AluJo SINE Alu 1 300 -12 311 343 97 30 chr6 45157561 45157829 -144121725 + L3b LINE CR1 1104 1389 -194 332 221 171 13 chr6 45159529 45159682 -144119872 + MIR SINE MIR 32 214 -48 306 294 12 0 chr6 45162130 45162215 -144117339 - MIR3 SINE MIR -26 182 97 423 277 110 13 chr6 45162777 45162932 -144116622 - MIR3 SINE MIR -8 200 31 233 307 27 0 chr6 45163596 45163671 -144115883 - MIR SINE MIR -116 92 16 203 305 11 11 chr6 45164489 45164584 -144114970 + G-rich Low_complexity Low_complexity 6 100 0 396 320 40 23 chr6 45165946 45166121 -144113433 - MIR3 SINE MIR -15 193 16 448 286 62 6 chr6 45167779 45167940 -144111614 - MIR3 SINE MIR -1 207 38 1904 128 37 17 chr6 45168053 45168350 -144111204 - AluJb SINE Alu -9 303 1 625 313 98 41 chr6 45169622 45170258 -144109296 + L2 LINE L2 2590 3272 0 1030 198 11 48 chr6 45171360 45171628 -144107926 + MIR SINE MIR 5 262 0 2050 163 0 0 chr6 45172023 45172324 -144107230 + AluJb SINE Alu 10 310 -2 2294 119 0 7 chr6 45172324 45172627 -144106927 + AluSx SINE Alu 1 301 -11 2409 105 0 6 chr6 45172631 45172945 -144106609 + AluSx SINE Alu 1 312 0 388 209 191 0 chr6 45173474 45173584 -144105970 - MER94 DNA DNA -3 131 1 202 200 0 0 chr6 45173741 45173781 -144105773 + (TG)n Simple_repeat Simple_repeat 1 40 0 413 118 0 0 chr6 45174587 45174655 -144104899 - MER53 DNA DNA 0 189 122 652 190 33 0 chr6 45174711 45174832 -144104722 - FLAM_A SINE Alu -8 125 1 368 239 80 0 chr6 45174892 45175005 -144104549 - MER53 DNA DNA -67 122 1 1684 189 3 16 chr6 45175068 45175375 -144104179 - AluJo SINE Alu -9 303 1 217 367 50 35 chr6 45176277 45176536 -144103018 + L2 LINE L2 2222 2484 -830 846 135 8 0 chr6 45176643 45176769 -144102785 - FRAM SINE Alu -8 168 42 1668 211 10 0 chr6 45176894 45177193 -144102361 + AluJo SINE Alu 1 302 -10 2609 68 0 0 chr6 45177298 45177606 -144101948 + AluY SINE Alu 1 308 -3 1971 75 4 0 chr6 45178628 45178867 -144100687 + AluSp SINE Alu 72 311 -2 2346 94 10 10 chr6 45178869 45179177 -144100377 + AluY SINE Alu 1 308 -3 716 265 59 17 chr6 45179302 45179540 -144100014 - MIR SINE MIR -7 255 8 2200 98 26 36 chr6 45179926 45180233 -144099321 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr6 45180236 45180261 -144099293 + AT_rich Low_complexity Low_complexity 1 25 0 602 206 123 12 chr6 45180410 45180580 -144098974 + MIR SINE MIR 14 202 -60 820 225 41 18 chr6 45180840 45181058 -144098496 - MIR SINE MIR -22 240 18 449 347 32 32 chr6 45181135 45181386 -144098168 - L3b LINE CR1 -219 1364 1114 2394 93 0 7 chr6 45181850 45182152 -144097402 - AluSg SINE Alu -10 300 1 891 191 54 0 chr6 45182293 45182461 -144097093 - AluJo SINE Alu -17 295 119 670 59 0 0 chr6 45183195 45183280 -144096274 + FLAM_C SINE Alu 27 111 -32 1616 127 0 0 chr6 45183312 45183524 -144096030 - AluSg SINE Alu -98 212 1 1999 125 0 18 chr6 45183552 45183833 -144095721 + AluSx SINE Alu 1 276 -36 2377 108 0 6 chr6 45183839 45184153 -144095401 - AluSx SINE Alu 0 312 1 996 194 43 0 chr6 45184198 45184384 -144095170 + AluJo SINE Alu 105 298 -14 405 58 0 0 chr6 45184503 45184555 -144094999 + (CA)n Simple_repeat Simple_repeat 1 52 0 1592 162 0 94 chr6 45184555 45184864 -144094690 - AluJo SINE Alu -30 282 3 1879 153 0 50 chr6 45184898 45185218 -144094336 - AluJo SINE Alu -8 304 1 2370 96 0 3 chr6 45185330 45185632 -144093922 - AluSx SINE Alu -5 307 7 1019 245 155 28 chr6 45185672 45186027 -144093527 + L1MC4a LINE L1 5501 5900 -1908 657 115 0 0 chr6 45186030 45186126 -144093428 - AluSg/x SINE Alu -17 292 197 2257 96 10 3 chr6 45186168 45186461 -144093093 + AluSc SINE Alu 1 295 -14 2305 113 7 0 chr6 45186592 45186894 -144092660 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr6 45186921 45186942 -144092612 + AT_rich Low_complexity Low_complexity 1 21 0 254 264 9 45 chr6 45187172 45187282 -144092272 + 7SK RNA RNA 5 110 -83 2445 95 0 0 chr6 45187721 45188026 -144091528 - AluSx SINE Alu -7 305 1 1839 108 126 22 chr6 45188226 45188503 -144091051 - AluSg SINE Alu -4 306 1 318 311 78 0 chr6 45189356 45189459 -144090095 + L2 LINE L2 3161 3271 -1 1797 145 17 17 chr6 45189628 45189917 -144089637 + AluJb SINE Alu 1 289 -23 2557 59 7 0 chr6 45189926 45190231 -144089323 + AluY SINE Alu 1 307 -4 290 261 104 30 chr6 45190256 45190390 -144089164 - MIR3 SINE MIR -64 144 1 2352 272 61 26 chr6 45190403 45190622 -144088932 + L2 LINE L2 2239 2449 -864 1835 107 12 0 chr6 45190622 45190865 -144088689 + AluSg SINE Alu 49 294 -16 2352 272 61 26 chr6 45190865 45191490 -144088064 + L2 LINE L2 2449 3134 -179 2319 116 0 0 chr6 45191490 45191800 -144087754 - AluSx SINE Alu -2 310 1 2352 272 61 26 chr6 45191800 45191973 -144087581 + L2 LINE L2 3134 3300 -13 180 77 0 0 chr6 45191976 45192002 -144087552 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 335 255 10 10 chr6 45192449 45192551 -144087003 - L1MC5 LINE L1 -54 7907 7806 188 360 118 0 chr6 45192901 45192974 -144086580 - L2 LINE L2 -5 3267 3204 2264 128 0 0 chr6 45192974 45193278 -144086276 + AluSx SINE Alu 1 304 -8 188 360 118 0 chr6 45193278 45193357 -144086197 - L2 LINE L2 -68 3204 3097 1127 221 61 80 chr6 45194656 45195082 -144084472 + MER39 LTR ERV1 249 666 -41 447 230 0 0 chr6 45195211 45195298 -144084256 + FLAM_A SINE Alu 1 87 -55 244 268 148 86 chr6 45195428 45195637 -144083917 + MIR SINE MIR 41 262 0 369 311 173 22 chr6 45195807 45196032 -144083522 - MIR SINE MIR -2 260 2 415 309 7 7 chr6 45196220 45196372 -144083182 - MIR3 SINE MIR 0 208 57 2380 73 6 19 chr6 45198762 45199076 -144080478 + AluSg SINE Alu 1 310 0 992 167 90 56 chr6 45199454 45199617 -144079937 - Charlie2a DNA MER1_type -2 2860 2704 2097 101 31 14 chr6 45199617 45199903 -144079651 - AluSc SINE Alu -18 291 1 992 167 90 56 chr6 45199903 45199928 -144079626 - Charlie2a DNA MER1_type -158 2704 2681 2279 100 7 0 chr6 45199928 45200219 -144079335 + AluSg SINE Alu 1 293 -17 992 167 90 56 chr6 45200219 45200352 -144079202 - Charlie2a DNA MER1_type -181 2681 2527 2660 204 128 7 chr6 45200421 45201652 -144077902 - Charlie2a DNA MER1_type -549 2313 902 459 233 43 68 chr6 45201673 45201836 -144077718 - Charlie2a DNA MER1_type -2500 282 124 2469 90 0 0 chr6 45201836 45202137 -144077417 - AluSg SINE Alu -9 301 1 1358 91 0 0 chr6 45202138 45202313 -144077241 - AluSq SINE Alu -3 310 136 2144 130 7 0 chr6 45202314 45202613 -144076941 - AluSx SINE Alu -11 301 1 340 145 0 0 chr6 45202615 45202677 -144076877 - Charlie2a DNA MER1_type -2649 133 72 201 208 83 0 chr6 45203206 45203254 -144076300 + L2 LINE L2 3218 3269 -3 21 0 0 0 chr6 45203962 45203983 -144075571 + AT_rich Low_complexity Low_complexity 1 21 0 2454 94 10 0 chr6 45205574 45205882 -144073672 + AluSx SINE Alu 1 311 -1 192 77 0 0 chr6 45206290 45206316 -144073238 + (A)n Simple_repeat Simple_repeat 1 26 0 1287 259 189 11 chr6 45208533 45209177 -144070377 + L2 LINE L2 2297 3074 -239 184 152 0 0 chr6 45209185 45209218 -144070336 - L2 LINE L2 -22 3291 3259 187 238 0 24 chr6 45209218 45209260 -144070294 - MIR SINE MIR -148 60 20 2259 108 0 10 chr6 45209565 45209872 -144069682 - AluSq SINE Alu -9 304 1 2226 105 7 13 chr6 45210025 45210331 -144069223 - AluSq SINE Alu -9 304 1 609 262 112 19 chr6 45210506 45210720 -144068834 + MIR SINE MIR 29 262 0 691 101 25 17 chr6 45215990 45216109 -144063445 + L1MB1 LINE L1 6038 6157 -11 337 350 121 6 chr6 45216875 45217032 -144062522 + MER91A DNA MER1_type 1 175 -21 251 122 20 0 chr6 45217400 45217449 -144062105 + CT-rich Low_complexity Low_complexity 1 50 0 707 224 219 0 chr6 45218342 45218552 -144061002 - MIR SINE MIR 0 262 7 191 344 8 56 chr6 45220018 45220143 -144059411 + L3b LINE CR1 1278 1396 -187 752 243 84 17 chr6 45220818 45221057 -144058497 - MIR SINE MIR -1 261 7 204 361 38 8 chr6 45222383 45222516 -144057038 + L3b LINE CR1 1153 1289 -294 209 311 0 33 chr6 45223114 45223204 -144056350 + GA-rich Low_complexity Low_complexity 4 90 0 182 290 62 80 chr6 45224432 45224608 -144054946 - L2 LINE L2 -1 3271 3099 572 252 25 44 chr6 45224634 45224793 -144054761 - L2 LINE L2 -5 3267 3112 192 324 36 54 chr6 45226499 45226610 -144052944 - MIR3 SINE MIR -49 159 51 525 313 15 41 chr6 45227500 45227603 -144051951 - MIR SINE MIR -15 247 150 1459 173 75 44 chr6 45227603 45227898 -144051656 - AluJo SINE Alu -8 304 1 525 313 15 41 chr6 45227898 45227989 -144051565 - MIR SINE MIR -112 150 58 391 296 121 25 chr6 45228596 45228876 -144050678 - L1ME LINE L1 -324 5797 5491 369 218 27 55 chr6 45229110 45229220 -144050334 - MER91A DNA MER1_type 0 196 90 2385 84 17 0 chr6 45230248 45230544 -144049010 + AluSg SINE Alu 2 302 -8 508 258 103 7 chr6 45230776 45230931 -144048623 - MER5B DNA MER1_type -4 174 5 234 333 94 0 chr6 45231113 45231209 -144048345 + MER5A DNA MER1_type 10 114 -75 369 289 155 11 chr6 45231702 45231889 -144047665 + MIR SINE MIR 33 246 -16 807 157 176 0 chr6 45231941 45232094 -144047460 - MER3 DNA MER1_type -10 199 20 2330 118 0 10 chr6 45232365 45232679 -144046875 - AluSx SINE Alu -1 311 1 433 248 52 52 chr6 45233379 45233532 -144046022 + MER5B DNA MER1_type 1 153 -25 598 280 74 37 chr6 45233572 45233815 -144045739 + MIR SINE MIR 6 257 -5 1750 184 3 23 chr6 45233815 45234120 -144045434 - AluJo SINE Alu -13 299 1 405 255 21 0 chr6 45235358 45235452 -144044102 - L2 LINE L2 0 3313 3218 228 263 152 30 chr6 45236724 45236823 -144042731 - MIR3 SINE MIR -84 124 14 225 119 0 0 chr6 45239760 45239802 -144039752 + (C)n Simple_repeat Simple_repeat 1 42 0 27 87 0 0 chr6 45242702 45242771 -144036783 + GC_rich Low_complexity Low_complexity 1 69 0 242 267 0 0 chr6 45243038 45243098 -144036456 + CT-rich Low_complexity Low_complexity 2 61 0 532 119 10 10 chr6 45243106 45243207 -144036347 + (TCC)n Simple_repeat Simple_repeat 3 103 0 204 200 117 33 chr6 45244577 45244637 -144034917 + MIR3 SINE MIR 92 156 -52 187 250 62 0 chr6 45244771 45244819 -144034735 + MIR3 SINE MIR 148 198 -10 220 260 78 13 chr6 45245961 45246038 -144033516 + MIR SINE MIR 89 170 -92 383 323 19 32 chr6 45246046 45246204 -144033350 + MIR SINE MIR 5 160 -102 640 261 107 14 chr6 45246233 45246448 -144033106 + MIR SINE MIR 28 262 0 2158 110 45 0 chr6 45246493 45246785 -144032769 + AluSx SINE Alu 1 305 -7 549 299 167 5 chr6 45247125 45247346 -144032208 - MIR SINE MIR -4 258 2 414 294 63 8 chr6 45248656 45248782 -144030772 + MIR SINE MIR 20 152 -110 285 323 21 0 chr6 45248870 45248963 -144030591 + L2 LINE L2 2198 2292 -1022 180 324 43 54 chr6 45248965 45249150 -144030404 + L2 LINE L2 2235 2417 -897 1760 162 18 3 chr6 45249457 45249741 -144029813 + AluJo SINE Alu 12 299 -13 365 267 61 23 chr6 45249852 45249983 -144029571 + L2 LINE L2 3136 3271 -1 2524 80 3 0 chr6 45251352 45251653 -144027901 - AluSp SINE Alu -11 302 1 220 118 0 0 chr6 45251985 45252019 -144027535 - MIR SINE MIR -11 251 218 191 283 33 0 chr6 45252019 45252045 -144027509 - L2 LINE L2 -17 3255 3194 209 254 0 0 chr6 45252820 45252879 -144026675 - MIR SINE MIR -69 193 135 213 232 71 0 chr6 45252940 45252996 -144026558 + MIR SINE MIR 82 141 -67 452 271 69 0 chr6 45253276 45253420 -144026134 + MIR3 SINE MIR 53 206 -2 186 338 80 7 chr6 45253898 45254049 -144025505 + L3 LINE CR1 850 1011 -566 1715 143 27 20 chr6 45254074 45254367 -144025187 + AluJb SINE Alu 1 295 -17 514 251 37 25 chr6 45254454 45254617 -144024937 - MIR SINE MIR -76 186 22 220 303 118 8 chr6 45254725 45254844 -144024710 + L3 LINE CR1 1331 1462 -115 416 217 75 25 chr6 45255076 45255196 -144024358 + MIR3 SINE MIR 33 158 -50 342 219 0 0 chr6 45255729 45255793 -144023761 + MIR SINE MIR 47 110 -152 421 259 28 0 chr6 45255798 45255906 -144023648 + MER94 DNA DNA 23 133 -1 547 257 18 35 chr6 45257160 45257331 -144022223 + MIR SINE MIR 87 254 -8 315 213 43 21 chr6 45257344 45257438 -144022116 - MIR SINE MIR -77 185 90 183 143 0 24 chr6 45257560 45257602 -144021952 - L2 LINE L2 -37 3235 3195 199 312 35 65 chr6 45257801 45257971 -144021583 - MIR SINE MIR -72 190 26 198 0 0 0 chr6 45258005 45258027 -144021527 + (T)n Simple_repeat Simple_repeat 1 22 0 200 292 0 0 chr6 45259090 45259155 -144020399 - MIR3 SINE MIR -27 181 117 583 195 18 18 chr6 45259333 45259446 -144020108 + MER81 DNA DNA 1 113 -1 411 281 79 6 chr6 45260292 45260456 -144019098 - MIR SINE MIR -47 215 40 186 200 13 107 chr6 45261805 45261855 -144017699 - L2 LINE L2 -1 3271 3229 683 292 58 12 chr6 45261855 45262098 -144017456 + MIR SINE MIR 1 254 -8 186 43 0 0 chr6 45262098 45262121 -144017433 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2000 126 42 0 chr6 45262715 45263000 -144016554 + AluSx SINE Alu 1 297 -15 408 20 0 0 chr6 45263025 45263074 -144016480 + (TG)n Simple_repeat Simple_repeat 2 50 0 2016 126 36 0 chr6 45263074 45263351 -144016203 - AluSx SINE Alu -25 287 1 362 180 0 0 chr6 45263496 45263557 -144015997 + L1ME1 LINE L1 34 94 -6302 236 217 9 28 chr6 45263563 45263669 -144015885 + GA-rich Low_complexity Low_complexity 3 106 0 6431 215 83 50 chr6 45263675 45264182 -144015372 + L1ME1 LINE L1 128 617 -5598 1687 163 0 42 chr6 45264182 45264489 -144015065 - AluJb SINE Alu -18 294 1 6431 215 83 50 chr6 45264489 45264504 -144015050 + L1ME1 LINE L1 617 630 -5585 2081 74 93 4 chr6 45264504 45264774 -144014780 - AluY SINE Alu -17 294 1 6431 215 83 50 chr6 45264774 45265006 -144014548 + L1ME1 LINE L1 630 853 -5362 2244 102 0 19 chr6 45265006 45265321 -144014233 + AluSc SINE Alu 1 309 0 6431 215 83 50 chr6 45265321 45266133 -144013421 + L1ME1 LINE L1 853 1637 -4578 1896 173 0 0 chr6 45266133 45266433 -144013121 + AluJb SINE Alu 1 300 -12 6431 215 83 50 chr6 45266433 45266939 -144012615 + L1ME1 LINE L1 1637 2125 -4090 1835 113 8 0 chr6 45266939 45267205 -144012349 + L1MB2 LINE L1 5904 6171 0 6431 215 83 50 chr6 45267205 45268368 -144011186 + L1ME1 LINE L1 2125 3433 -2782 2211 122 0 16 chr6 45268372 45268684 -144010870 + AluSx SINE Alu 1 307 -5 2071 139 18 3 chr6 45268726 45269065 -144010489 + L1MC1 LINE L1 5990 6333 0 877 142 0 0 chr6 45269070 45269197 -144010357 - FLAM_C SINE Alu -6 127 1 2719 199 43 0 chr6 45269217 45269780 -144009774 + L1ME1 LINE L1 5386 5972 -261 1796 135 46 104 chr6 45269780 45270194 -144009360 + MLT1B LTR MaLR 1 390 0 1027 197 88 13 chr6 45270194 45270451 -144009103 + L1ME1 LINE L1 5965 6403 0 2567 58 7 0 chr6 45270801 45271109 -144008445 + AluY SINE Alu 1 310 -1 228 297 39 39 chr6 45271463 45271591 -144007963 - L2 LINE L2 -1 3271 3144 367 263 106 25 chr6 45271802 45271962 -144007592 - MLT1L LTR MaLR -335 280 108 606 270 68 22 chr6 45272237 45272459 -144007095 + MIR SINE MIR 31 262 0 519 266 106 18 chr6 45272676 45272902 -144006652 + MIR SINE MIR 6 251 -11 187 310 0 46 chr6 45272934 45273021 -144006533 + L2 LINE L2 2227 2309 -1005 280 236 109 0 chr6 45273266 45273381 -144006173 - MIR SINE MIR -75 133 6 1140 149 21 54 chr6 45274222 45274464 -144005090 + L1MB4 LINE L1 5947 6180 0 553 254 166 60 chr6 45275967 45276365 -144003189 - L2 LINE L2 -1 3312 2873 367 255 28 0 chr6 45276876 45276982 -144002572 + MIR SINE MIR 43 151 -57 2101 145 0 0 chr6 45277403 45277700 -144001854 + AluJb SINE Alu 1 297 -15 442 117 52 0 chr6 45278067 45278144 -144001410 - FLAM_C SINE Alu 0 143 63 2262 99 3 0 chr6 45278188 45278480 -144001074 - AluSx SINE Alu -19 293 1 2367 86 3 0 chr6 45279746 45280047 -143999507 - AluSp SINE Alu -11 302 1 1862 76 106 0 chr6 45280050 45280314 -143999240 - AluSx SINE Alu -18 294 3 2289 91 13 32 chr6 45283039 45283348 -143996206 - AluSx SINE Alu -9 303 1 5785 80 39 28 chr6 45283363 45284213 -143995341 - L1MA3 LINE L1 0 6305 5447 504 228 16 0 chr6 45284325 45284452 -143995102 - L1MC5 LINE L1 -36 7925 7797 648 247 108 132 chr6 45285806 45285885 -143993669 - MLT1F LTR MaLR 0 542 463 1129 172 221 0 chr6 45285885 45286129 -143993425 - AluJo SINE Alu -3 299 2 648 247 108 132 chr6 45286129 45286467 -143993087 - MLT1F LTR MaLR -79 463 119 2360 81 17 0 chr6 45286467 45286764 -143992790 - AluSp SINE Alu -11 302 1 648 247 108 132 chr6 45286764 45286850 -143992704 - MLT1F LTR MaLR -423 119 50 1368 157 88 48 chr6 45286850 45287055 -143992499 - MER2 DNA MER2_type 0 344 120 2346 88 20 7 chr6 45287055 45287360 -143992194 + AluSc SINE Alu 1 309 0 1368 157 88 48 chr6 45287360 45287485 -143992069 - MER2 DNA MER2_type -224 120 1 648 247 108 132 chr6 45287485 45287534 -143992020 - MLT1F LTR MaLR -492 50 1 2310 98 0 7 chr6 45287828 45288124 -143991430 - AluSc SINE Alu -15 294 1 1828 164 10 30 chr6 45288151 45288449 -143991105 + AluJb SINE Alu 1 292 -20 327 329 57 73 chr6 45289071 45289442 -143990112 - L2 LINE L2 -4 3268 2904 207 250 238 0 chr6 45289647 45289727 -143989827 - L2 LINE L2 -626 2688 2590 842 179 95 18 chr6 45289732 45289900 -143989654 + AluSq SINE Alu 1 181 -132 3624 165 26 20 chr6 45289901 45290018 -143989536 - L1MC1 LINE L1 -392 5941 5826 2265 111 0 7 chr6 45290018 45290348 -143989206 - AluSx SINE Alu 0 312 1 1994 116 0 0 chr6 45290348 45290606 -143988948 - AluSx SINE Alu -17 295 38 3624 165 26 20 chr6 45290606 45291551 -143988003 - L1MC1 LINE L1 -506 5827 4873 1721 174 3 29 chr6 45291551 45291861 -143987693 + AluJb SINE Alu 1 302 -10 339 293 83 8 chr6 45291895 45292028 -143987526 - L2 LINE L2 -849 2465 2323 526 205 26 95 chr6 45292673 45292863 -143986691 - LTR41 LTR ERVL -6 767 591 990 201 68 57 chr6 45292929 45293057 -143986497 - LTR41 LTR ERVL -506 267 142 2522 207 67 23 chr6 45293057 45293621 -143985933 + MLT1E LTR MaLR 1 589 -4 990 201 68 57 chr6 45293621 45293756 -143985798 - LTR41 LTR ERVL -631 142 1 3413 260 76 29 chr6 45294036 45294676 -143984878 - ERVL LTR ERVL -331 5433 4719 1825 195 3 0 chr6 45294676 45294983 -143984571 + AluJb SINE Alu 1 308 -4 3413 260 76 29 chr6 45294983 45295438 -143984116 - ERVL LTR ERVL -1045 4719 4287 26 0 0 0 chr6 45295438 45295464 -143984090 + AT_rich Low_complexity Low_complexity 1 26 0 4463 166 69 26 chr6 45295471 45296420 -143983134 - L1MB4 LINE L1 -1 6179 5272 2193 106 3 10 chr6 45296420 45296723 -143982831 - AluSx SINE Alu 0 312 12 4463 166 69 26 chr6 45296723 45296751 -143982803 - L1MB4 LINE L1 -908 5272 5247 339 24 0 0 chr6 45296751 45296792 -143982762 - L1PA6 LINE L1 -7 6147 6107 4463 166 69 26 chr6 45296792 45297012 -143982542 - L1MB4 LINE L1 -933 5247 4767 2027 257 25 94 chr6 45297020 45297540 -143982014 - ERVL LTR ERVL -2255 3509 2955 1709 166 7 27 chr6 45297540 45297835 -143981719 + AluJo SINE Alu 1 289 -23 2027 257 25 94 chr6 45297835 45297847 -143981707 - ERVL LTR ERVL -2809 2955 2944 1603 168 37 44 chr6 45297847 45298144 -143981410 + AluJo SINE Alu 1 295 -17 2027 257 25 94 chr6 45298144 45298321 -143981233 - ERVL LTR ERVL -2820 2944 2848 257 174 22 0 chr6 45298402 45298448 -143981106 - LTR41 LTR ERVL -14 759 713 963 228 15 10 chr6 45298459 45298661 -143980893 - LTR41 LTR ERVL -568 205 3 2280 109 20 0 chr6 45299801 45300103 -143979451 - AluSq SINE Alu -5 308 1 21 0 0 0 chr6 45300210 45300231 -143979323 + AT_rich Low_complexity Low_complexity 1 21 0 281 220 51 0 chr6 45300259 45300318 -143979236 - L1ME4a LINE L1 -85 6036 5975 312 275 154 13 chr6 45300385 45300534 -143979020 + MIR3 SINE MIR 39 208 0 1858 183 83 8 chr6 45305097 45305495 -143974059 - L1MB5 LINE L1 -2 6172 5745 493 207 6 155 chr6 45305585 45305759 -143973795 - L1MB5 LINE L1 -446 5728 5581 * 5969 208 78 29 chr6 45305756 45306781 -143972773 - L1MB5 LINE L1 -1148 4998 4024 1934 146 0 10 chr6 45306781 45307090 -143972464 - AluJb SINE Alu 0 312 7 5969 208 78 29 chr6 45307090 45307182 -143972372 - L1MB5 LINE L1 -2122 4024 3938 2460 62 0 10 chr6 45307182 45307490 -143972064 - AluY SINE Alu -6 305 1 5969 208 78 29 chr6 45307490 45308019 -143971535 - L1MB5 LINE L1 -2208 3938 3271 1919 121 37 17 chr6 45308020 45308318 -143971236 - AluSx SINE Alu -8 304 1 218 93 0 23 chr6 45308319 45308362 -143971192 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1839 117 62 0 chr6 45308362 45308636 -143970918 - AluSq SINE Alu -22 291 1 283 236 0 0 chr6 45308641 45308696 -143970858 + HUERS-P1 LTR ERV1 5481 5535 -728 2018 200 34 30 chr6 45308785 45308889 -143970665 - L1M4 LINE L1 -1665 4481 4379 2175 151 42 23 chr6 45308889 45309319 -143970235 - L1MA10 LINE L1 -1 6333 5896 2018 200 34 30 chr6 45309319 45309718 -143969836 - L1M4 LINE L1 -1767 4379 3976 747 199 33 28 chr6 45309718 45309899 -143969655 - MLT1D LTR MaLR 0 505 324 * 1027 245 112 51 chr6 45309891 45310222 -143969332 - MLT1D LTR MaLR -7 498 148 875 212 58 5 chr6 45310220 45310468 -143969086 - MLT1D LTR MaLR -207 298 7 * 1600 275 49 45 chr6 45310468 45310961 -143968593 - L1M4 LINE L1 -2170 3976 3477 1516 151 121 11 chr6 45310961 45311233 -143968321 + AluJb SINE Alu 1 302 0 1600 275 49 45 chr6 45311233 45311500 -143968054 - L1M4 LINE L1 -2669 3477 3213 2128 96 3 32 chr6 45311521 45311833 -143967721 + AluSg SINE Alu 1 303 -7 243 73 0 24 chr6 45311870 45311911 -143967643 - Alu SINE Alu -5 297 258 202 225 127 14 chr6 45312036 45312107 -143967447 - L2 LINE L2 -275 2997 2919 2080 101 0 3 chr6 45312426 45312733 -143966821 + AluY SINE Alu 1 311 0 199 109 0 43 chr6 45312757 45312803 -143966751 + (GGAGAA)n Simple_repeat Simple_repeat 3 46 0 281 318 35 0 chr6 45314886 45314971 -143964583 + L2 LINE L2 2619 2706 -608 915 113 14 14 chr6 45315000 45315142 -143964412 - MER20 DNA MER1_type -48 171 30 316 367 22 22 chr6 45315203 45315429 -143964125 + L2 LINE L2 2701 2926 -388 2213 103 0 3 chr6 45315512 45315814 -143963740 - AluSq SINE Alu -12 301 1 700 274 22 0 chr6 45315845 45316024 -143963530 + L2 LINE L2 3131 3313 0 197 324 122 7 chr6 45316607 45316755 -143962799 + MIR SINE MIR 46 210 -52 2183 92 9 25 chr6 45317629 45317946 -143961608 + AluSx SINE Alu 1 312 0 991 160 112 0 chr6 45318348 45318536 -143961018 + MER3 DNA MER1_type 1 209 0 741 232 189 64 chr6 45318662 45319304 -143960250 + HAL1 LINE L1 1041 1762 -745 338 248 60 53 chr6 45319681 45319814 -143959740 + L1MDa LINE L1 2444 2577 -3963 404 274 75 86 chr6 45319867 45319985 -143959569 + L1MDa LINE L1 2663 2781 -3759 1531 113 108 0 chr6 45319985 45320216 -143959338 + AluSq SINE Alu 1 256 -57 404 274 75 86 chr6 45320216 45320553 -143959001 + L1MDa LINE L1 2781 3113 -3427 807 41 0 0 chr6 45320631 45320728 -143958826 + AluY SINE Alu 1 97 -214 2226 75 10 3 chr6 45320744 45321038 -143958516 + AluY SINE Alu 1 296 -15 841 223 57 10 chr6 45321476 45321669 -143957885 + MER58A DNA MER1_type 8 209 -15 1982 131 3 3 chr6 45321777 45322089 -143957465 + AluSx SINE Alu 1 312 0 409 294 151 5 chr6 45322199 45322417 -143957137 + MIR SINE MIR 13 262 0 2033 134 0 0 chr6 45322685 45322984 -143956570 - AluSg SINE Alu -9 301 3 358 194 0 0 chr6 45323790 45323852 -143955702 - MIR3 SINE MIR -54 154 93 200 287 96 11 chr6 45325389 45325483 -143954071 + L2 LINE L2 3201 3302 -11 863 285 55 10 chr6 45325564 45325855 -143953699 - L3 LINE CR1 -88 1489 1186 526 184 1 85 chr6 45326564 45326661 -143952893 + L1ME1 LINE L1 6044 6148 -186 2190 142 21 12 chr6 45326661 45326993 -143952561 + MER1B DNA MER1_type 3 337 0 526 184 1 85 chr6 45326993 45327055 -143952499 + L1ME1 LINE L1 6148 6333 -1 778 149 58 0 chr6 45327193 45327314 -143952240 - MER1B DNA MER1_type -167 130 3 468 192 4 2 chr6 45327318 45327411 -143952143 - L1ME1 LINE L1 -45 6128 6044 181 220 0 68 chr6 45327595 45327654 -143951900 + L2 LINE L2 2419 2473 -841 2396 68 0 13 chr6 45328037 45328344 -143951210 + AluY SINE Alu 1 303 -8 335 346 39 16 chr6 45328379 45328506 -143951048 + L2 LINE L2 3143 3272 0 1799 159 3 10 chr6 45328518 45328814 -143950740 + AluJb SINE Alu 1 294 -18 271 341 131 5 chr6 45328988 45329202 -143950352 + L1MC4a LINE L1 5684 5924 -1884 892 256 115 50 chr6 45329433 45329605 -143949949 + MLT1I LTR MaLR 1 160 -249 1846 119 30 24 chr6 45329605 45329900 -143949654 - AluJo SINE Alu -14 298 2 892 256 115 50 chr6 45329900 45330110 -143949444 + MLT1I LTR MaLR 160 408 -1 24 0 0 0 chr6 45330126 45330150 -143949404 + AT_rich Low_complexity Low_complexity 1 24 0 272 297 76 62 chr6 45330841 45330986 -143948568 - MIR3 SINE MIR -61 147 1 328 159 48 0 chr6 45331746 45331809 -143947745 - L2 LINE L2 -19 3253 3188 205 353 9 35 chr6 45332000 45332116 -143947438 - L2 LINE L2 -781 2533 2421 372 71 0 0 chr6 45332254 45332310 -143947244 + (TG)n Simple_repeat Simple_repeat 2 57 0 699 191 0 16 chr6 45332311 45332437 -143947117 + MER20 DNA MER1_type 93 216 -3 512 268 82 55 chr6 45332600 45332783 -143946771 - MIR SINE MIR -12 250 63 460 279 142 28 chr6 45333005 45333461 -143946093 + L1ME1 LINE L1 5365 6049 -117 2040 33 4 0 chr6 45333810 45334052 -143945502 + AluSc SINE Alu 67 309 0 398 53 18 0 chr6 45334052 45334109 -143945445 + (TA)n Simple_repeat Simple_repeat 2 59 0 267 313 31 0 chr6 45334659 45334755 -143944799 + L2 LINE L2 3201 3299 -14 494 323 70 22 chr6 45335493 45335722 -143943832 + MIR SINE MIR 12 251 -11 2573 167 45 4 chr6 45335729 45336215 -143943339 + L1MB4 LINE L1 5673 6178 -2 1889 193 92 7 chr6 45336267 45336691 -143942863 + L1ME3A LINE L1 5702 6161 -9 184 321 138 9 chr6 45337921 45338030 -143941524 - MIR3 SINE MIR -76 132 10 870 264 156 38 chr6 45338056 45338499 -143941055 + MLT1J LTR MaLR 4 498 -13 454 294 59 36 chr6 45339044 45339265 -143940289 - MLT1L LTR MaLR -3 612 387 254 227 0 15 chr6 45339519 45339585 -143939969 - Charlie7 DNA MER1_type -91 2521 2457 1022 206 0 0 chr6 45339586 45339761 -143939793 + FAM SINE Alu 1 175 0 469 300 73 0 chr6 45339867 45340017 -143939537 + MIR SINE MIR 4 164 -98 281 278 35 17 chr6 45340260 45340375 -143939179 + MIR SINE MIR 23 139 -69 851 203 101 18 chr6 45340692 45340786 -143938768 - MIR SINE MIR -6 256 171 297 0 0 0 chr6 45340786 45340819 -143938735 + (CAT)n Simple_repeat Simple_repeat 2 34 0 851 203 101 18 chr6 45340819 45340941 -143938613 - MIR SINE MIR -91 171 22 2315 86 3 0 chr6 45340941 45341242 -143938312 - AluSg SINE Alu -8 302 1 608 221 182 65 chr6 45341364 45341538 -143938016 - L1MC4 LINE L1 -149 7893 7741 1908 129 0 7 chr6 45341538 45341816 -143937738 - AluSx SINE Alu -36 276 1 608 221 182 65 chr6 45341816 45341917 -143937637 - L1MC4 LINE L1 -301 7741 7653 2512 126 21 42 chr6 45341917 45342394 -143937160 - L1MB7 LINE L1 -19 6165 5699 608 221 182 65 chr6 45342394 45342501 -143937053 - L1MC4 LINE L1 -389 7653 7465 299 240 13 13 chr6 45343255 45343330 -143936224 + MIR SINE MIR 73 147 -115 625 304 52 35 chr6 45343489 45343719 -143935835 + MIR SINE MIR 14 247 -15 276 246 46 0 chr6 45344286 45344351 -143935203 + MLT1J LTR MaLR 1 68 -443 685 181 87 0 chr6 45344367 45344516 -143935038 - MER20 DNA MER1_type -1 218 57 2222 99 3 0 chr6 45344517 45344820 -143934734 + AluSx SINE Alu 1 304 -8 1342 265 29 27 chr6 45344847 45345259 -143934295 + MLT1J LTR MaLR 99 511 0 541 299 90 10 chr6 45345334 45345535 -143934019 - MIR SINE MIR 0 262 46 304 108 62 0 chr6 45346961 45347026 -143932528 + (ATGGTG)n Simple_repeat Simple_repeat 3 71 0 * 947 142 0 9 chr6 45347011 45347238 -143932316 + (TGG)n Simple_repeat Simple_repeat 1 224 0 1853 82 12 0 chr6 45397238 45397482 -143882072 + AluSg SINE Alu 59 305 -5 990 181 6 0 chr6 45397482 45397659 -143881895 + AluSg/x SINE Alu 134 311 -1 2053 78 0 109 chr6 45398618 45398965 -143880589 - AluSg SINE Alu -1 309 1 1093 236 5 0 chr6 45399069 45399277 -143880277 - MIR SINE MIR -21 241 33 25 0 0 0 chr6 45399643 45399668 -143879886 + AT_rich Low_complexity Low_complexity 1 25 0 634 127 103 56 chr6 45399677 45399803 -143879751 + AluSq/x SINE Alu 5 136 -177 22 0 0 0 chr6 45400121 45400143 -143879411 + GC_rich Low_complexity Low_complexity 1 22 0 221 279 13 57 chr6 45401231 45401389 -143878165 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 563 105 0 0 chr6 45403098 45403184 -143876370 - L1MB4 LINE L1 -1 6179 6094 255 240 248 16 chr6 45404961 45405082 -143874472 - MIR3 SINE MIR -21 187 39 24 53 0 0 chr6 45406819 45406857 -143872697 + GC_rich Low_complexity Low_complexity 1 38 0 241 279 41 23 chr6 45406899 45407071 -143872483 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 950 206 94 14 chr6 45409233 45409456 -143870098 + MIR SINE MIR 13 253 -9 228 282 39 0 chr6 45409490 45409568 -143869986 + MIR3 SINE MIR 76 156 -52 184 258 32 16 chr6 45410586 45410648 -143868906 + L2 LINE L2 3029 3091 -181 996 223 133 62 chr6 45411115 45411135 -143868419 + L2 LINE L2 2696 2713 -600 1486 171 43 46 chr6 45411135 45411439 -143868115 + AluJb SINE Alu 2 304 -8 2113 134 0 0 chr6 45411439 45411746 -143867808 + AluSx SINE Alu 1 307 -5 996 223 133 62 chr6 45411746 45412065 -143867489 + L2 LINE L2 2713 3008 -305 2121 118 0 16 chr6 45412065 45412098 -143867456 - AluSg SINE Alu 0 310 278 198 0 0 0 chr6 45412098 45412120 -143867434 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2121 118 0 16 chr6 45412120 45412400 -143867154 - AluSg SINE Alu -32 278 2 1995 112 3 16 chr6 45412404 45412708 -143866846 - AluSq SINE Alu -13 300 1 996 223 133 62 chr6 45412708 45412837 -143866717 + L2 LINE L2 3010 3128 -185 2356 49 0 3 chr6 45412837 45413147 -143866407 - AluY SINE Alu 0 309 1 996 223 133 62 chr6 45413147 45413246 -143866308 + L2 LINE L2 3128 3310 -3 1687 126 0 89 chr6 45413947 45414273 -143865281 + AluJb SINE Alu 5 301 -11 622 255 17 81 chr6 45414290 45414467 -143865087 + MIR SINE MIR 41 201 -61 2214 78 3 23 chr6 45414467 45414775 -143864779 - AluY SINE Alu -9 302 1 622 255 17 81 chr6 45414775 45414832 -143864722 + MIR SINE MIR 201 260 -2 2011 138 0 3 chr6 45414842 45415146 -143864408 - AluSx SINE Alu -9 303 1 374 282 117 0 chr6 45415271 45415374 -143864180 - L2 LINE L2 0 3313 3199 323 213 43 32 chr6 45415381 45415475 -143864079 + MER5A DNA MER1_type 9 103 -86 497 257 68 0 chr6 45416336 45416484 -143863070 + MIR SINE MIR 7 164 -98 664 235 59 0 chr6 45416540 45416693 -143862861 - MIR SINE MIR -41 221 60 2131 201 56 71 chr6 45416894 45417427 -143862127 + MLT1F LTR MaLR 18 542 0 1913 129 3 35 chr6 45417713 45418030 -143861524 - AluSq SINE Alu -6 307 1 196 330 55 33 chr6 45419342 45419433 -143860121 - MIR SINE MIR -138 124 32 1237 91 23 0 chr6 45419965 45420140 -143859414 - AluSg/x SINE Alu -10 300 122 321 159 0 0 chr6 45420858 45420921 -143858633 + CT-rich Low_complexity Low_complexity 2 64 0 256 229 114 69 chr6 45421265 45421396 -143858158 + MIR SINE MIR 33 169 -93 267 31 0 0 chr6 45421886 45421923 -143857631 + (CCCCAA)n Simple_repeat Simple_repeat 1 69 0 267 31 0 0 chr6 45421923 45421955 -143857599 + (CCCCAA)n Simple_repeat Simple_repeat 3 34 0 230 156 0 22 chr6 45422627 45422672 -143856882 + C-rich Low_complexity Low_complexity 3 46 0 2029 125 0 22 chr6 45423136 45423271 -143856283 + AluSq SINE Alu 1 138 -175 2142 85 4 0 chr6 45423271 45423575 -143855979 + AluY SINE Alu 1 305 0 2029 125 0 22 chr6 45423575 45423751 -143855803 + AluSq SINE Alu 138 306 -7 445 214 0 0 chr6 45423812 45423901 -143855653 - AluSp/q SINE Alu -4 309 221 351 269 140 25 chr6 45423952 45424223 -143855331 + L2 LINE L2 2727 3020 -252 1644 169 44 0 chr6 45424363 45424658 -143854896 + AluJo SINE Alu 1 308 -4 662 285 44 93 chr6 45424708 45424990 -143854564 - L2 LINE L2 -6 3307 3013 1859 121 44 0 chr6 45424990 45425287 -143854267 - AluSx SINE Alu 0 309 1 662 285 44 93 chr6 45425287 45425299 -143854255 - L2 LINE L2 -300 3013 3002 2100 98 0 54 chr6 45425299 45425616 -143853938 - AluSq SINE Alu -13 300 1 662 285 44 93 chr6 45425616 45425650 -143853904 - L2 LINE L2 -311 3002 2968 2227 94 0 7 chr6 45425650 45425948 -143853606 - AluSq SINE Alu -17 296 1 662 285 44 93 chr6 45425948 45426044 -143853510 - L2 LINE L2 -345 2968 2901 489 244 65 58 chr6 45426044 45426159 -143853395 + Zaphod DNA AcHobo 1 114 -771 2318 91 3 0 chr6 45426159 45426467 -143853087 + AluSq SINE Alu 5 313 0 489 244 65 58 chr6 45426467 45426608 -143852946 + Zaphod DNA AcHobo 114 257 -628 932 158 24 12 chr6 45426608 45426772 -143852782 + AluJb SINE Alu 136 301 -11 2459 208 123 26 chr6 45426775 45427123 -143852431 + Zaphod DNA AcHobo 252 565 -3466 1832 143 3 17 chr6 45427123 45427424 -143852130 - AluJb SINE Alu -15 297 1 2459 208 123 26 chr6 45427424 45427535 -143852019 + Zaphod DNA AcHobo 565 664 -3367 2237 93 6 13 chr6 45427535 45427847 -143851707 + AluSx SINE Alu 1 310 -2 2459 208 123 26 chr6 45427847 45428118 -143851436 + Zaphod DNA AcHobo 664 1054 -2977 2224 99 3 3 chr6 45428129 45428442 -143851112 + AluSq SINE Alu 1 313 0 546 272 12 25 chr6 45428652 45428711 -143850843 + MARNA DNA Mariner 208 266 -320 891 132 0 22 chr6 45428711 45428847 -143850707 + AluJo SINE Alu 1 133 -169 546 272 12 25 chr6 45428847 45428949 -143850605 + MARNA DNA Mariner 266 367 -219 350 180 0 0 chr6 45429047 45429108 -143850446 - MIR SINE MIR -139 123 63 449 323 12 24 chr6 45429190 45429357 -143850197 + MIR SINE MIR 94 258 -4 187 309 18 0 chr6 45429347 45429402 -143850152 - MIR SINE MIR -94 168 113 * 218 253 53 21 chr6 45429870 45429965 -143849589 - MIR SINE MIR -141 121 24 257 232 134 24 chr6 45430029 45430111 -143849443 - L2 LINE L2 -41 3231 3141 2208 86 7 3 chr6 45430180 45430484 -143849070 + AluSq SINE Alu 5 309 -4 1899 159 0 3 chr6 45430494 45430789 -143848765 + AluSx SINE Alu 1 294 -18 434 216 21 10 chr6 45431298 45431395 -143848159 - L2 LINE L2 -5 3308 3211 334 178 0 41 chr6 45431753 45431826 -143847728 - MIR SINE MIR -13 249 180 970 180 0 6 chr6 45431826 45432004 -143847550 + AluJo SINE Alu 128 304 -8 196 333 58 0 chr6 45432006 45432093 -143847461 - MIR SINE MIR -85 177 86 455 261 150 0 chr6 45432307 45432460 -143847094 + MER5B DNA MER1_type 1 176 -2 543 306 35 12 chr6 45432507 45432677 -143846877 + MIR SINE MIR 44 217 -45 860 101 8 31 chr6 45433348 45433477 -143846077 + FLAM_C SINE Alu 1 126 -7 2147 104 7 0 chr6 45433483 45433780 -143845774 + AluSx SINE Alu 1 299 -13 238 226 48 0 chr6 45433816 45433878 -143845676 - MIR SINE MIR -67 141 77 2914 121 50 25 chr6 45433956 45434014 -143845540 + L1MB3 LINE L1 5612 5667 -516 2380 47 0 13 chr6 45434014 45434312 -143845242 + AluY SINE Alu 1 294 -17 2914 121 50 25 chr6 45434312 45434772 -143844782 + L1MB3 LINE L1 5667 6143 -40 737 152 8 32 chr6 45434772 45434897 -143844657 + AluJb SINE Alu 2 123 -189 331 85 0 0 chr6 45434897 45434944 -143844610 + L1MB4 LINE L1 6126 6172 -8 378 0 0 0 chr6 45434983 45435025 -143844529 + (CA)n Simple_repeat Simple_repeat 2 43 0 2311 86 0 7 chr6 45435048 45435351 -143844203 - AluSx SINE Alu -11 301 1 516 140 0 30 chr6 45435357 45435457 -143844097 - AluJ/FRAM SINE Alu 0 312 216 763 153 0 0 chr6 45435477 45435623 -143843931 - FLAM_C SINE Alu 0 146 1 2184 113 3 0 chr6 45435812 45436123 -143843431 + AluSx SINE Alu 1 312 0 2104 99 0 0 chr6 45436286 45436592 -143842962 - AluY SINE Alu 0 306 1 1545 153 0 16 chr6 45436764 45437013 -143842541 + AluJb SINE Alu 1 245 -67 1791 133 46 7 chr6 45437269 45437554 -143842000 - AluJb SINE Alu -16 296 1 347 248 203 0 chr6 45437696 45437849 -143841705 + L2 LINE L2 780 963 -2351 1178 318 51 42 chr6 45437850 45438344 -143841210 + MLT1K LTR MaLR 17 514 -74 2153 99 0 0 chr6 45438395 45438703 -143840851 - AluSq SINE Alu 0 308 1 2360 86 0 3 chr6 45438728 45439041 -143840513 - AluSx SINE Alu 0 312 1 2334 67 3 0 chr6 45439052 45439349 -143840205 - AluSp SINE Alu -15 298 1 1757 175 7 0 chr6 45439432 45439741 -143839813 + AluJb SINE Alu 1 311 -1 639 229 92 25 chr6 45439772 45440012 -143839542 - L1ME3A LINE L1 -10 6160 5905 29 0 0 0 chr6 45440012 45440041 -143839513 + AT_rich Low_complexity Low_complexity 1 29 0 1015 158 6 0 chr6 45440062 45440227 -143839327 - FRAM SINE Alu -12 164 1 2201 101 3 13 chr6 45440237 45440553 -143839001 - AluSp SINE Alu 0 313 1 1623 191 27 0 chr6 45440560 45440859 -143838695 - AluJb SINE Alu 0 312 6 386 263 81 31 chr6 45440863 45441023 -143838531 - L1M4 LINE L1 -1092 5054 4887 2016 123 7 0 chr6 45441034 45441351 -143838203 - AluSx SINE Alu 0 312 1 1963 118 4 0 chr6 45441451 45441730 -143837824 + AluSx SINE Alu 1 280 -32 291 28 0 0 chr6 45441730 45441766 -143837788 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2119 124 3 0 chr6 45441778 45442084 -143837470 + AluSx SINE Alu 1 307 -5 240 252 61 10 chr6 45442087 45442190 -143837364 - MER5B DNA MER1_type -56 133 20 181 307 193 9 chr6 45442179 45442407 -143837147 + L2 LINE L2 1554 1823 -1491 * 222 37 0 0 chr6 45442551 45442578 -143836976 + (TG)n Simple_repeat Simple_repeat 2 28 0 1774 147 0 48 chr6 45442579 45442892 -143836662 - AluJo SINE Alu -14 298 1 499 320 50 18 chr6 45442914 45443136 -143836418 - L1 LINE L1 -834 5312 5084 2085 108 3 0 chr6 45443145 45443432 -143836122 + AluSx SINE Alu 1 288 -24 237 307 0 78 chr6 45443462 45443591 -143835963 - L1 LINE L1 -1128 5018 4901 1462 191 30 20 chr6 45443591 45443894 -143835660 + AluJo SINE Alu 1 306 -6 237 307 0 78 chr6 45443894 45443917 -143835637 - L1 LINE L1 -1245 4901 4878 870 196 6 18 chr6 45443929 45444097 -143835457 - FRAM SINE Alu 0 166 1 1043 245 217 25 chr6 45444376 45444681 -143834873 + L2 LINE L2 40 285 -3029 180 0 0 0 chr6 45444681 45444701 -143834853 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 1043 245 217 25 chr6 45444701 45444880 -143834674 + L2 LINE L2 285 428 -2886 1454 161 68 31 chr6 45444880 45445172 -143834382 + AluJo SINE Alu 1 303 -9 1043 245 217 25 chr6 45445172 45445332 -143834222 + L2 LINE L2 428 809 -2505 1137 223 93 71 chr6 45445586 45445886 -143833668 - MLT1H LTR MaLR -37 512 195 1853 134 3 52 chr6 45445886 45446215 -143833339 + AluSq SINE Alu 1 313 0 1137 223 93 71 chr6 45446215 45446408 -143833146 - MLT1H LTR MaLR -354 195 8 3321 304 54 66 chr6 45446412 45446711 -143832843 + ERVL LTR ERVL 1139 1440 -4324 2132 115 0 7 chr6 45446711 45447015 -143832539 + AluSx SINE Alu 1 302 -10 3321 304 54 66 chr6 45447015 45447072 -143832482 + ERVL LTR ERVL 1440 1496 -4268 2381 75 7 0 chr6 45447072 45447377 -143832177 - AluSp SINE Alu -6 307 1 3321 304 54 66 chr6 45447377 45448059 -143831495 + ERVL LTR ERVL 1496 2185 -3579 1863 145 3 26 chr6 45448059 45448362 -143831192 + AluSx SINE Alu 1 296 -16 2327 99 0 3 chr6 45448363 45448676 -143830878 + AluSx SINE Alu 1 312 0 3321 304 54 66 chr6 45448676 45448884 -143830670 + ERVL LTR ERVL 2185 2394 -3370 1606 159 15 4 chr6 45448884 45449155 -143830399 - AluJo SINE Alu -11 301 28 3321 304 54 66 chr6 45449155 45449649 -143829905 + ERVL LTR ERVL 2394 2863 -2901 246 278 0 0 chr6 45449761 45449815 -143829739 + MER58A DNA MER1_type 1 54 -170 3036 171 31 76 chr6 45450021 45450446 -143829108 - L1M4 LINE L1 -1059 5087 4713 2013 148 0 0 chr6 45450446 45450749 -143828805 - AluSx SINE Alu -9 303 1 3036 171 31 76 chr6 45450749 45451122 -143828432 - L1M4 LINE L1 -1433 4713 4325 771 131 0 0 chr6 45451124 45451231 -143828323 - FLAM_A SINE Alu -12 130 24 320 215 38 0 chr6 45451253 45451332 -143828222 - L1M4 LINE L1 -1814 4332 4251 478 268 74 16 chr6 45451341 45451465 -143828089 + MLT1J LTR MaLR 65 205 -306 2295 87 0 3 chr6 45451465 45451765 -143827789 - AluSx SINE Alu -13 299 1 478 268 74 16 chr6 45451765 45451830 -143827724 + MLT1J LTR MaLR 205 265 -246 555 158 79 7 chr6 45452415 45452431 -143827123 - L1ME2 LINE L1 -271 5893 5880 2304 86 0 9 chr6 45452431 45452746 -143826808 - AluSx SINE Alu 0 312 1 555 158 79 7 chr6 45452746 45452881 -143826673 - L1ME2 LINE L1 -284 5880 5731 2174 114 0 3 chr6 45452889 45453197 -143826357 - AluSx SINE Alu -5 307 1 812 165 8 8 chr6 45453197 45453330 -143826224 - AluJo SINE Alu -178 134 2 658 249 36 6 chr6 45453413 45453578 -143825976 + MER5B DNA MER1_type 9 178 0 2113 103 3 13 chr6 45453816 45454117 -143825437 - AluSx SINE Alu -9 303 6 202 192 14 14 chr6 45454931 45455004 -143824550 + G-rich Low_complexity Low_complexity 3 75 0 1766 174 103 166 chr6 45455475 45455744 -143823810 + MER97a DNA MER1_type? 8 292 -602 2083 146 3 0 chr6 45455744 45456053 -143823501 - AluSx SINE Alu -2 310 1 1766 174 103 166 chr6 45456053 45456093 -143823461 + MER97a DNA MER1_type? 292 333 -561 1149 87 6 12 chr6 45456093 45456254 -143823300 + L1PA10 LINE L1 6003 6162 -6 1766 174 103 166 chr6 45456254 45456591 -143822963 + MER97a DNA MER1_type? 333 582 -312 647 172 0 97 chr6 45456591 45456684 -143822870 - FLAM_A SINE Alu -169 133 57 2207 139 3 0 chr6 45456684 45456994 -143822560 - AluSx SINE Alu -1 311 1 647 172 0 97 chr6 45456994 45457045 -143822509 - FLAM_A SINE Alu -245 57 3 1766 174 103 166 chr6 45457045 45457318 -143822236 + MER97a DNA MER1_type? 582 871 -23 264 330 92 23 chr6 45457413 45457889 -143821665 - HAL1b LINE L1 -708 640 102 1038 194 26 133 chr6 45458082 45458268 -143821286 - AluYb8 SINE Alu 0 308 104 2090 119 0 14 chr6 45458268 45458561 -143820993 - AluSg SINE Alu -21 289 1 1038 194 26 133 chr6 45458561 45458584 -143820970 - AluYb8 SINE Alu -204 104 80 1674 182 10 10 chr6 45458584 45458875 -143820679 - AluJo SINE Alu -21 291 1 1038 194 26 133 chr6 45458875 45459009 -143820545 - AluYb8 SINE Alu -228 80 1 2273 116 0 6 chr6 45459021 45459332 -143820222 - AluSx SINE Alu -2 310 2 26 0 0 0 chr6 45459372 45459398 -143820156 + AT_rich Low_complexity Low_complexity 1 26 0 688 192 0 60 chr6 45459492 45459643 -143819911 - FLAM_C SINE Alu 0 143 2 4177 205 62 11 chr6 45459754 45460226 -143819328 + L1M4 LINE L1 714 1161 -5485 663 144 64 40 chr6 45460226 45460351 -143819203 + FLAM_A SINE Alu 1 128 -5 4177 205 62 11 chr6 45460351 45460845 -143818709 + L1M4 LINE L1 1161 1721 -4925 1954 140 7 10 chr6 45460845 45460980 -143818574 + AluSx SINE Alu 1 135 -177 2373 91 0 35 chr6 45460980 45461299 -143818255 + AluSg1 SINE Alu 1 308 -1 1954 140 7 10 chr6 45461299 45461455 -143818099 + AluSx SINE Alu 135 291 -21 4177 205 62 11 chr6 45461455 45461575 -143817979 + L1M4 LINE L1 1721 1833 -4813 255 31 0 0 chr6 45461577 45461609 -143817945 + L1M4 LINE L1 1911 1942 -4704 252 0 0 0 chr6 45461623 45461651 -143817903 + (A)n Simple_repeat Simple_repeat 1 28 0 982 193 11 149 chr6 45461651 45461999 -143817555 + AluJo SINE Alu 2 301 -1 760 234 5 0 chr6 45462005 45462210 -143817344 + L1 LINE L1 3028 3233 -2913 1000 245 55 36 chr6 45462263 45462751 -143816803 - MLT1G1 LTR MaLR -4 545 1 2240 99 3 0 chr6 45462869 45463174 -143816380 - AluSp SINE Alu 0 306 1 416 263 9 0 chr6 45463273 45463387 -143816167 + MIR SINE MIR 9 123 -139 2174 125 3 0 chr6 45463677 45463973 -143815581 - AluSx SINE Alu -15 297 1 227 303 161 7 chr6 45464088 45464243 -143815311 + L1 LINE L1 4800 4978 -1168 2237 121 20 0 chr6 45464297 45464602 -143814952 + AluSx SINE Alu 1 311 -1 516 275 115 69 chr6 45464602 45465107 -143814447 + HAL1 LINE L1 11 538 -1969 320 224 0 13 chr6 45465133 45465209 -143814345 + HAL1 LINE L1 650 724 -1783 847 141 0 15 chr6 45465225 45465360 -143814194 - FLAM_C SINE Alu 0 133 1 496 304 110 13 chr6 45465373 45465724 -143813830 + L1P3 LINE L1 5377 5772 -382 1761 150 11 7 chr6 45466227 45466501 -143813053 - AluJo SINE Alu -31 281 7 216 0 0 0 chr6 45466507 45466531 -143813023 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2256 86 0 40 chr6 45466543 45466846 -143812708 - AluY SINE Alu -20 291 1 692 213 0 15 chr6 45466848 45466984 -143812570 - AluJo SINE Alu -178 134 1 732 264 207 20 chr6 45467051 45467505 -143812049 - LTR67 LTR ERVL -12 545 7 2376 108 0 6 chr6 45467506 45467821 -143811733 + AluSq SINE Alu 1 313 0 2048 119 7 10 chr6 45468046 45468349 -143811205 + AluJo SINE Alu 1 302 -10 2316 107 7 13 chr6 45468733 45469042 -143810512 + AluSx SINE Alu 1 307 -5 2096 137 3 0 chr6 45469219 45469519 -143810035 - AluJo SINE Alu -11 301 1 8225 51 11 2 chr6 45469628 45470626 -143808928 - LTR13 LTR ERVK 0 1007 1 2183 166 21 30 chr6 45470750 45470787 -143808767 + L1M3 LINE L1 5291 5327 -844 1591 199 34 0 chr6 45470787 45471078 -143808476 + AluJo SINE Alu 2 302 -10 2183 166 21 30 chr6 45471078 45471468 -143808086 + L1M3 LINE L1 5327 5714 -457 5648 274 70 67 chr6 45471471 45474412 -143805142 - LTR10B-int LTR ERV1 -147 6502 3551 3039 239 60 23 chr6 45474391 45475613 -143803941 - LTR10B-int LTR ERV1 -4135 2514 986 * 1004 247 88 47 chr6 45475679 45476047 -143803507 - LTR10B-int LTR ERV1 -6768 1017 588 2063 70 0 37 chr6 45476047 45476318 -143803236 - AluY SINE Alu -9 302 42 1004 247 88 47 chr6 45476318 45476414 -143803140 - LTR10B-int LTR ERV1 -7197 588 497 1426 219 80 6 chr6 45476414 45476739 -143802815 - LTR10B-int LTR ERV1 -6297 352 4 3411 112 22 16 chr6 45476739 45477240 -143802314 - LTR10B LTR ERV1 0 505 2 1467 101 48 10 chr6 45477240 45477448 -143802106 + AluSg/x SINE Alu 82 297 -13 308 158 0 0 chr6 45477449 45477506 -143802048 + L1MB2 LINE L1 6112 6168 -3 2356 84 0 0 chr6 45478091 45478378 -143801176 - AluY SINE Alu -24 287 1 1941 154 0 3 chr6 45478380 45478679 -143800875 - AluJo SINE Alu -14 298 1 2342 97 0 0 chr6 45479906 45480205 -143799349 - AluY SINE Alu -11 300 2 2335 101 0 3 chr6 45480508 45480814 -143798740 + AluSq SINE Alu 1 305 -8 480 239 51 0 chr6 45480842 45480959 -143798595 + MLT2E LTR ERVL 19 141 -487 1813 153 3 33 chr6 45480961 45481268 -143798286 - AluJo SINE Alu -14 298 1 1879 150 18 4 chr6 45482254 45482534 -143797020 - AluJb SINE Alu -28 284 1 2357 112 7 0 chr6 45483094 45483398 -143796156 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 45484208 45484237 -143795317 + AT_rich Low_complexity Low_complexity 1 29 0 1595 190 18 7 chr6 45486299 45486578 -143792976 + AluJb SINE Alu 1 282 -30 24 0 0 0 chr6 45486583 45486607 -143792947 + GC_rich Low_complexity Low_complexity 1 24 0 509 83 56 0 chr6 45486608 45486680 -143792874 - MADE1 DNA Mariner -4 76 1 528 299 65 53 chr6 45487289 45487683 -143791871 + L1M4 LINE L1 4559 4962 -1184 2253 99 7 3 chr6 45487683 45487985 -143791569 + AluSx SINE Alu 1 303 -9 528 299 65 53 chr6 45487985 45488065 -143791489 + L1M4 LINE L1 4962 5039 -1107 28 29 0 0 chr6 45488066 45488101 -143791453 + AT_rich Low_complexity Low_complexity 1 35 0 852 120 15 15 chr6 45488106 45488239 -143791315 - FRAM SINE Alu -23 153 21 2050 141 3 3 chr6 45488396 45488700 -143790854 + AluSx SINE Alu 2 305 -7 948 193 0 59 chr6 45488801 45489050 -143790504 + AluJo SINE Alu 2 296 -16 22 0 0 0 chr6 45489681 45489703 -143789851 + AT_rich Low_complexity Low_complexity 1 22 0 2322 89 0 13 chr6 45490436 45490750 -143788804 - AluSg SINE Alu 0 310 1 866 206 6 12 chr6 45490899 45491059 -143788495 - MER58A DNA MER1_type 0 159 1 330 65 48 0 chr6 45491151 45491213 -143788341 + (TA)n Simple_repeat Simple_repeat 2 66 0 1915 112 65 0 chr6 45491234 45491494 -143788060 + AluSx SINE Alu 1 277 -35 315 0 0 0 chr6 45491497 45491532 -143788022 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1415 162 63 86 chr6 45492206 45492589 -143786965 + MLT1A2 LTR MaLR 1 374 0 975 148 0 0 chr6 45492854 45492996 -143786558 + FRAM SINE Alu 5 146 -30 1358 154 23 5 chr6 45493463 45493677 -143785877 + MER20 DNA MER1_type 2 219 0 194 236 83 28 chr6 45495336 45495408 -143784146 - MIR3 SINE MIR -6 202 127 21 57 0 0 chr6 45495536 45495571 -143783983 + AT_rich Low_complexity Low_complexity 1 35 0 311 191 191 43 chr6 45495588 45495703 -143783851 + MER112 DNA MER1_type 8 139 -121 842 150 0 0 chr6 45496394 45496527 -143783027 + FLAM_C SINE Alu 1 133 0 279 301 16 57 chr6 45496605 45496728 -143782826 - L2 LINE L2 -5 3267 3150 2259 72 43 4 chr6 45497921 45498222 -143781332 - AluSp SINE Alu 0 314 3 1930 161 0 16 chr6 45498509 45498813 -143780741 - AluJb SINE Alu -11 301 3 776 123 25 16 chr6 45498826 45498948 -143780606 - FLAM_C SINE Alu -18 125 3 372 191 0 0 chr6 45498949 45499038 -143780516 + (TA)n Simple_repeat Simple_repeat 2 90 0 2263 113 0 0 chr6 45499038 45499338 -143780216 - AluSx SINE Alu -12 300 1 2000 138 0 10 chr6 45499925 45500222 -143779332 + AluJo SINE Alu 1 294 -18 231 211 125 67 chr6 45501927 45502031 -143777523 + L2 LINE L2 3187 3296 -17 1057 194 27 40 chr6 45502613 45502835 -143776719 + MER20 DNA MER1_type 1 219 0 193 255 196 29 chr6 45503299 45503401 -143776153 - MIR SINE MIR -112 150 32 2295 83 10 13 chr6 45503462 45503764 -143775790 - AluSx SINE Alu -11 301 1 1644 151 52 11 chr6 45503981 45504252 -143775302 + AluJo SINE Alu 1 282 -30 222 300 22 11 chr6 45504510 45504600 -143774954 + (CATA)n Simple_repeat Simple_repeat 2 92 0 409 262 56 16 chr6 45504939 45505065 -143774489 - MIR SINE MIR -52 210 80 2029 131 3 13 chr6 45505374 45505672 -143773882 + AluJb SINE Alu 1 295 -17 2159 109 3 0 chr6 45505982 45506267 -143773287 + AluSx SINE Alu 1 286 -26 2099 117 0 7 chr6 45508142 45508432 -143771122 - AluSx SINE Alu -24 288 1 2109 102 16 23 chr6 45508600 45508930 -143770624 + AluSx SINE Alu 1 312 0 218 146 167 0 chr6 45509141 45509189 -143770365 + MIR3 SINE MIR 150 205 -3 441 53 0 18 chr6 45509404 45509461 -143770093 - U6 snRNA snRNA -51 56 1 1921 176 58 0 chr6 45509790 45510119 -143769435 - MER7A DNA MER2_type 0 346 1 1004 155 12 6 chr6 45510175 45510336 -143769218 + FRAM SINE Alu 1 157 -19 21 0 0 0 chr6 45511578 45511599 -143767955 + AT_rich Low_complexity Low_complexity 1 21 0 488 275 66 6 chr6 45512874 45513056 -143766498 + MIR SINE MIR 33 225 -37 198 0 0 0 chr6 45513058 45513080 -143766474 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 193 226 32 65 chr6 45513308 45513370 -143766184 + L2 LINE L2 3211 3270 -2 2037 114 0 54 chr6 45513600 45513915 -143765639 - AluSx SINE Alu -14 298 1 1696 163 3 10 chr6 45513917 45514218 -143765336 - AluJo SINE Alu -13 299 1 242 311 18 18 chr6 45514511 45514675 -143764879 - L1M4 LINE L1 -3863 2283 2120 2394 59 24 0 chr6 45514702 45514992 -143764562 - AluY SINE Alu -14 297 1 1181 169 14 86 chr6 45515187 45515293 -143764261 + L1 LINE L1 3916 4028 -2118 2000 159 0 6 chr6 45515293 45515607 -143763947 - AluJo SINE Alu 0 312 1 1181 169 14 86 chr6 45515607 45515790 -143763764 + L1 LINE L1 4028 4184 -1962 * 2460 148 81 31 chr6 45515786 45516285 -143763269 + L1PA16 LINE L1 4950 5479 -687 2583 60 0 10 chr6 45516285 45516599 -143762955 + AluY SINE Alu 1 311 0 2460 148 81 31 chr6 45516599 45516848 -143762706 + L1PA16 LINE L1 5479 5714 -452 2165 116 10 0 chr6 45516854 45517147 -143762407 - AluSx SINE Alu -16 296 1 1396 170 107 0 chr6 45517149 45517402 -143762152 - AluJo SINE Alu -21 291 12 488 98 43 8 chr6 45517420 45517498 -143762056 + L1PA16 LINE L1 5706 5781 -373 2217 151 40 8 chr6 45517908 45518279 -143761275 + L1PA16 LINE L1 5769 6151 -15 1418 180 33 33 chr6 45518320 45518620 -143760934 + AluJo SINE Alu 1 300 -12 1647 147 71 4 chr6 45518700 45518997 -143760557 - AluSx SINE Alu 0 315 1 431 284 152 59 chr6 45519208 45519871 -143759683 - HAL1 LINE L1 -875 1632 908 229 281 53 0 chr6 45520041 45520098 -143759456 - L2 LINE L2 -8 3305 3246 2532 68 0 7 chr6 45520194 45520501 -143759053 + AluY SINE Alu 1 305 -6 201 71 0 89 chr6 45520564 45520620 -143758934 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 696 167 81 63 chr6 45520677 45520851 -143758703 - MER5B DNA MER1_type -1 177 1 287 167 33 0 chr6 45521958 45522018 -143757536 - L2 LINE L2 -787 2527 2466 1860 132 4 0 chr6 45522018 45522276 -143757278 + AluSx SINE Alu 1 259 -53 2531 109 21 21 chr6 45522440 45522815 -143756739 - THE1C LTR MaLR 0 375 1 327 300 0 20 chr6 45522841 45522941 -143756613 - MIR SINE MIR -112 150 53 2262 112 0 3 chr6 45523113 45523425 -143756129 - AluSx SINE Alu -1 311 1 1836 173 6 16 chr6 45523790 45524103 -143755451 - AluJo SINE Alu -2 310 1 1892 184 116 66 chr6 45524152 45524752 -143754802 + L1MD3 LINE L1 5980 6549 -1446 2144 106 0 3 chr6 45524752 45525036 -143754518 + AluSg SINE Alu 1 283 -27 1892 184 116 66 chr6 45525036 45525065 -143754489 + L1MD3 LINE L1 6549 6575 -1420 279 0 0 0 chr6 45525065 45525096 -143754458 + (CA)n Simple_repeat Simple_repeat 2 32 0 1892 184 116 66 chr6 45525096 45525940 -143753614 + L1MD3 LINE L1 6575 7743 -252 2272 117 0 7 chr6 45525940 45526249 -143753305 + AluSx SINE Alu 1 307 -5 1892 184 116 66 chr6 45526249 45526505 -143753049 + L1MD3 LINE L1 7743 7985 -10 24 0 0 0 chr6 45526653 45526677 -143752877 + AT_rich Low_complexity Low_complexity 1 24 0 370 274 96 13 chr6 45526852 45527009 -143752545 - MIR3 SINE MIR -10 198 29 1101 187 0 6 chr6 45527231 45527402 -143752152 - FAM SINE Alu -5 170 1 257 395 89 0 chr6 45527558 45527715 -143751839 - L2 LINE L2 0 3272 3102 184 133 33 0 chr6 45527846 45527876 -143751678 - MIR SINE MIR -138 70 40 418 264 117 6 chr6 45527975 45528138 -143751416 + MIR SINE MIR 50 230 -32 28 29 0 0 chr6 45528238 45528273 -143751281 + AT_rich Low_complexity Low_complexity 1 35 0 1624 179 10 24 chr6 45528289 45528585 -143750969 - AluJb SINE Alu -20 292 1 2198 110 0 3 chr6 45528613 45528905 -143750649 - AluSx SINE Alu -21 291 1 22 0 0 0 chr6 45530330 45530352 -143749202 + AT_rich Low_complexity Low_complexity 1 22 0 1437 137 11 102 chr6 45530385 45530669 -143748885 + AluJo SINE Alu 30 287 -25 2288 93 17 0 chr6 45531254 45531545 -143748009 + AluSx SINE Alu 5 300 -12 1637 130 29 76 chr6 45531597 45531912 -143747642 + AluJb SINE Alu 1 300 -12 1601 199 0 13 chr6 45532136 45532437 -143747117 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr6 45532563 45532584 -143746970 + AT_rich Low_complexity Low_complexity 1 21 0 789 248 12 79 chr6 45532683 45532870 -143746684 + MIR SINE MIR 12 179 -83 2394 76 0 0 chr6 45532870 45533172 -143746382 + AluY SINE Alu 1 302 -9 789 248 12 79 chr6 45533172 45533238 -143746316 + MIR SINE MIR 179 248 -14 299 256 128 30 chr6 45533325 45533458 -143746096 - L1MC/D LINE L1 -2089 5719 5574 1481 166 14 62 chr6 45533482 45533772 -143745782 - AluJb SINE Alu -17 295 20 239 184 0 0 chr6 45533784 45533822 -143745732 - Alu SINE Alu -176 126 89 917 203 25 10 chr6 45533825 45534022 -143745532 - AluJo SINE Alu -92 220 21 833 264 19 5 chr6 45534053 45534265 -143745289 + MER90 LTR ERV1 1 215 -399 891 109 0 0 chr6 45534265 45534384 -143745170 + AluSg/x SINE Alu 137 255 -57 1843 154 56 30 chr6 45534416 45534811 -143744743 + MER90 LTR ERV1 210 614 0 282 159 0 0 chr6 45534944 45534988 -143744566 - L1ME LINE L1 -461 5660 5617 2110 135 0 3 chr6 45534998 45535294 -143744260 - AluSx SINE Alu -17 295 1 2456 59 3 0 chr6 45535365 45535654 -143743900 + AluY SINE Alu 1 290 -21 2391 57 0 0 chr6 45535677 45535988 -143743566 - AluY SINE Alu 0 311 1 21 36 0 0 chr6 45536259 45536287 -143743267 + AT_rich Low_complexity Low_complexity 1 28 0 5157 148 21 56 chr6 45536411 45537229 -143742325 - L1MB2 LINE L1 -25 6146 5302 806 164 8 8 chr6 45537229 45537351 -143742203 - FLAM_C SINE Alu -11 122 1 5157 148 21 56 chr6 45537351 45537659 -143741895 - L1MB2 LINE L1 -869 5302 5071 2202 108 0 34 chr6 45537659 45537982 -143741572 - AluSq SINE Alu -1 312 1 5157 148 21 56 chr6 45537982 45538191 -143741363 - L1MB2 LINE L1 -1100 5071 4856 2281 106 7 0 chr6 45538625 45538926 -143740628 - AluSx SINE Alu -9 303 1 1853 133 0 4 chr6 45539023 45539293 -143740261 - AluJb SINE Alu -21 291 23 189 0 0 0 chr6 45539419 45539440 -143740114 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 45539794 45539817 -143739737 + AT_rich Low_complexity Low_complexity 1 23 0 829 228 32 6 chr6 45539883 45540041 -143739513 + AluJo SINE Alu 117 278 -34 363 154 0 0 chr6 45540041 45540106 -143739448 + GA-rich Low_complexity Low_complexity 1 65 0 2256 89 10 0 chr6 45540177 45540469 -143739085 + AluSg SINE Alu 1 295 -15 471 183 49 0 chr6 45540579 45540661 -143738893 + MIR SINE MIR 41 126 -136 1725 200 94 8 chr6 45540719 45541498 -143738056 + L1ME1 LINE L1 5113 6165 -1 2444 83 0 3 chr6 45541584 45541885 -143737669 + AluSc SINE Alu 1 300 -9 218 260 104 0 chr6 45542332 45542409 -143737145 - MIR SINE MIR 0 262 178 23 54 0 0 chr6 45542411 45542448 -143737106 + AT_rich Low_complexity Low_complexity 1 37 0 2345 112 3 0 chr6 45542517 45542829 -143736725 + AluSq SINE Alu 1 313 0 2103 126 3 3 chr6 45543172 45543481 -143736073 + AluSx SINE Alu 3 311 -1 189 0 0 0 chr6 45544229 45544250 -143735304 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1681 140 75 29 chr6 45544817 45544961 -143734593 + AluJb SINE Alu 1 137 -175 1671 156 0 11 chr6 45544961 45545236 -143734318 + AluSx SINE Alu 1 272 -40 1681 140 75 29 chr6 45545236 45545370 -143734184 + AluJb SINE Alu 137 292 -20 5949 173 81 43 chr6 45545417 45546817 -143732737 - Charlie1a DNA MER1_type -1 1454 2 2567 66 0 0 chr6 45547367 45547670 -143731884 - AluSg SINE Alu -6 304 2 1766 170 10 20 chr6 45548327 45548627 -143730927 - AluJo SINE Alu -15 297 1 549 217 133 0 chr6 45549086 45549229 -143730325 - MIR SINE MIR -26 236 75 212 296 10 71 chr6 45549875 45549973 -143729581 + MIR3 SINE MIR 97 165 -43 7435 124 58 15 chr6 45550024 45550884 -143728670 - Tigger3b DNA MER2_type -1797 1231 305 1796 179 7 13 chr6 45550884 45551192 -143728362 - AluJo SINE Alu -6 306 1 7435 124 58 15 chr6 45551192 45551511 -143728043 - Tigger3b DNA MER2_type -2723 305 1 22 0 0 0 chr6 45551602 45551624 -143727930 + AT_rich Low_complexity Low_complexity 1 22 0 2008 100 44 0 chr6 45551632 45551951 -143727603 + AluSx SINE Alu 1 331 0 370 270 104 52 chr6 45552087 45552226 -143727328 + MIR SINE MIR 31 186 -76 970 229 188 8 chr6 45552226 45552471 -143727083 + AluJo SINE Alu 2 290 -12 370 270 104 52 chr6 45552471 45552542 -143727012 + MIR SINE MIR 186 252 -10 201 288 173 14 chr6 45553160 45553299 -143726255 + MIR SINE MIR 21 181 -81 216 268 25 115 chr6 45553381 45553538 -143726016 + L2 LINE L2 2747 2889 -425 225 320 79 3 chr6 45553825 45553965 -143725589 + MIR SINE MIR 6 154 -71 764 259 37 59 chr6 45554880 45555201 -143724353 + L1MC4 LINE L1 7276 7589 -453 887 181 0 30 chr6 45555201 45555367 -143724187 + FRAM SINE Alu 10 170 -6 772 260 108 17 chr6 45555367 45555663 -143723891 + L1MC4 LINE L1 7577 7899 -143 2289 119 0 3 chr6 45555742 45556052 -143723502 + AluSx SINE Alu 1 309 -3 382 311 90 52 chr6 45557651 45557918 -143721636 - HAL1 LINE L1 -1041 1466 1190 808 197 6 39 chr6 45557926 45558104 -143721450 - MER5B DNA MER1_type -6 172 1 1679 150 16 53 chr6 45558169 45558489 -143721065 - AluJo SINE Alu -4 308 1 2039 152 0 0 chr6 45558576 45558879 -143720675 + AluSq SINE Alu 1 303 -10 2473 82 0 0 chr6 45558879 45559182 -143720372 + AluY SINE Alu 1 303 -8 1293 140 236 0 chr6 45559987 45560237 -143719317 + AluJo SINE Alu 2 310 -2 2200 107 0 16 chr6 45560374 45560684 -143718870 - AluSx SINE Alu -6 306 2 426 268 49 79 chr6 45560951 45561216 -143718338 + L1ME4a LINE L1 5855 6111 -10 263 303 20 0 chr6 45561372 45561471 -143718083 - L2 LINE L2 -1008 2306 2206 724 200 34 11 chr6 45561558 45561733 -143717821 + MER46B DNA MER2_type 2 55 -181 9156 35 2 1 chr6 45561849 45562919 -143716635 + MER11C LTR ERVK 1 1071 0 1356 161 67 42 chr6 45562988 45563273 -143716281 + AluJo SINE Alu 1 292 -20 25 51 0 0 chr6 45563829 45563868 -143715686 + AT_rich Low_complexity Low_complexity 1 39 0 581 106 16 81 chr6 45563868 45563991 -143715563 + MER46B DNA MER2_type 43 157 -79 508 105 0 35 chr6 45564191 45564277 -143715277 + MER46B DNA MER2_type 154 236 0 1311 118 0 5 chr6 45564525 45564712 -143714842 - AluSp SINE Alu -4 309 124 564 248 8 0 chr6 45564815 45564940 -143714614 + FLAM_A SINE Alu 1 126 -7 843 149 8 0 chr6 45564949 45565083 -143714471 + AluSq/x SINE Alu 1 135 -178 24 0 0 0 chr6 45565083 45565107 -143714447 + AT_rich Low_complexity Low_complexity 1 24 0 608 215 44 30 chr6 45565136 45565271 -143714283 - L2 LINE L2 0 3313 3177 216 269 90 26 chr6 45565454 45565532 -143714022 + L2 LINE L2 3172 3254 -18 366 269 143 8 chr6 45566176 45566295 -143713259 + MIR3 SINE MIR 61 195 -13 2157 177 58 56 chr6 45566475 45566517 -143713037 - MLT1D LTR MaLR -1 504 464 2315 91 3 22 chr6 45566517 45566835 -143712719 + AluSx SINE Alu 1 312 0 2461 68 0 13 chr6 45566839 45567150 -143712404 + AluY SINE Alu 1 307 -4 2157 177 58 56 chr6 45567150 45567604 -143711950 - MLT1D LTR MaLR -43 462 2 1054 92 0 0 chr6 45567858 45567989 -143711565 + AluSg SINE Alu 1 131 -179 2226 69 10 30 chr6 45568004 45568309 -143711245 + AluY SINE Alu 1 299 -12 4624 218 104 22 chr6 45568309 45568698 -143710856 - L1M4 LINE L1 -2017 4129 3774 1914 156 3 28 chr6 45568698 45569018 -143710536 + AluJb SINE Alu 1 312 0 4624 218 104 22 chr6 45569018 45569158 -143710396 - L1M4 LINE L1 -2372 3774 3647 2233 111 3 0 chr6 45569158 45569456 -143710098 - AluSp SINE Alu -14 299 1 4624 218 104 22 chr6 45569456 45570174 -143709380 - L1M4 LINE L1 -2499 3647 2726 2504 69 3 0 chr6 45570174 45570477 -143709077 - AluSp SINE Alu -9 304 1 4624 218 104 22 chr6 45570477 45570778 -143708776 - L1M4 LINE L1 -3420 2726 2451 1055 202 67 13 chr6 45570798 45571036 -143708518 + L1MB7 LINE L1 5877 6127 -57 815 152 0 15 chr6 45571066 45571198 -143708356 - FLAM_C SINE Alu -3 130 1 395 94 0 0 chr6 45571198 45571262 -143708292 + L1MB7 LINE L1 6112 6175 -9 2195 98 17 7 chr6 45571400 45571697 -143707857 + AluSq SINE Alu 1 300 -13 722 283 41 14 chr6 45571697 45571916 -143707638 + MIR SINE MIR 22 246 -16 722 193 0 22 chr6 45571972 45572107 -143707447 - FLAM_C SINE Alu 0 133 2 1953 153 3 33 chr6 45572186 45572493 -143707061 - AluJb SINE Alu -14 298 1 309 349 71 32 chr6 45573103 45573384 -143706170 - L2 LINE L2 -338 2976 2685 692 237 149 17 chr6 45573385 45573800 -143705754 + L2 LINE L2 2742 3213 -100 272 374 123 0 chr6 45573800 45573963 -143705591 - MIR SINE MIR -78 184 2 2394 71 3 10 chr6 45575203 45575498 -143704056 - AluSc SINE Alu -16 293 1 1971 132 65 3 chr6 45575661 45576001 -143703553 + MER47A DNA MER2_type 3 363 -3 377 270 112 45 chr6 45576112 45576402 -143703152 + L1ME LINE L1 5511 5822 -299 2228 82 27 3 chr6 45576518 45576812 -143702742 + AluSc SINE Alu 1 301 -8 426 20 0 0 chr6 45576917 45576968 -143702586 + (TG)n Simple_repeat Simple_repeat 2 52 0 505 268 54 0 chr6 45577129 45577241 -143702313 - L2 LINE L2 0 3272 3155 1618 92 0 0 chr6 45577508 45577704 -143701850 + AluSq SINE Alu 1 196 -117 1257 138 11 0 chr6 45577704 45577885 -143701669 + AluSg/x SINE Alu 111 293 -17 269 24 0 0 chr6 45578540 45578582 -143700972 - L1PA4 LINE L1 0 6155 6114 259 48 0 0 chr6 45578588 45578630 -143700924 - L1PA3 LINE L1 0 6155 6114 275 359 26 26 chr6 45579014 45579131 -143700423 + L3 LINE CR1 1338 1454 -123 22 0 0 0 chr6 45579998 45580020 -143699534 + AT_rich Low_complexity Low_complexity 1 22 0 2201 98 23 13 chr6 45580365 45580671 -143698883 + AluSq SINE Alu 5 313 0 1909 167 0 16 chr6 45580886 45581203 -143698351 + AluJb SINE Alu 1 312 0 2442 64 0 0 chr6 45581782 45582077 -143697477 - AluY SINE Alu -16 295 1 23 33 0 0 chr6 45582319 45582349 -143697205 + AT_rich Low_complexity Low_complexity 1 30 0 2302 78 3 20 chr6 45582553 45582859 -143696695 + AluY SINE Alu 1 301 -10 191 261 22 0 chr6 45583018 45583064 -143696490 - L2 LINE L2 -16 3256 3210 1834 158 44 0 chr6 45583177 45583474 -143696080 + AluJb SINE Alu 1 310 -2 22 56 0 0 chr6 45583500 45583536 -143696018 + AT_rich Low_complexity Low_complexity 1 36 0 449 230 53 18 chr6 45583822 45583935 -143695619 + MIR3 SINE MIR 63 179 -29 554 194 366 11 chr6 45584510 45584685 -143694869 - MIR SINE MIR 0 262 26 606 236 67 51 chr6 45634858 45635178 -143644376 - MLT1H1 LTR MaLR -204 363 48 406 301 85 45 chr6 45635226 45635472 -143644082 - MLT1H1-int LTR MaLR 0 1371 1116 2202 123 3 0 chr6 45635514 45635807 -143643747 + AluSx SINE Alu 1 294 -18 1331 125 11 0 chr6 45635902 45636086 -143643468 - AluSg/x SINE Alu -2 308 123 433 225 85 78 chr6 45636091 45636220 -143643334 - MLT1H LTR MaLR -342 207 32 802 144 6 24 chr6 45636398 45636425 -143643129 + MER53 DNA DNA 1 27 -162 2272 85 0 14 chr6 45636425 45636749 -143642805 + AluSx SINE Alu 1 312 0 802 144 6 24 chr6 45636749 45636888 -143642666 + MER53 DNA DNA 27 164 -25 234 145 116 87 chr6 45636884 45636953 -143642601 - MER53 DNA DNA -94 95 25 * 2676 7 0 0 chr6 45636953 45637292 -143642262 - AluYa5 SINE Alu 0 339 1 2025 138 3 3 chr6 45637294 45637590 -143641964 - AluJb SINE Alu -16 296 1 2220 125 0 0 chr6 45637602 45637897 -143641657 - AluSx SINE Alu -17 295 1 618 136 9 0 chr6 45638017 45638127 -143641427 + L1PA14 LINE L1 6051 6161 0 652 218 94 44 chr6 45638138 45638206 -143641348 + L1M4 LINE L1 4889 4952 -1194 2525 64 0 0 chr6 45638206 45638501 -143641053 - AluY SINE Alu -16 295 1 652 218 94 44 chr6 45638501 45638707 -143640847 + L1M4 LINE L1 4952 5177 -969 2370 105 0 0 chr6 45638717 45639012 -143640542 + AluSq SINE Alu 1 295 -18 913 156 21 0 chr6 45639012 45639153 -143640401 + AluSg/x SINE Alu 132 275 -35 865 113 56 0 chr6 45639153 45639313 -143640241 + L1MA4A LINE L1 6124 6292 -11 880 259 106 61 chr6 45639383 45639874 -143639680 + LTR67 LTR ERVL 45 557 0 248 317 20 30 chr6 45639874 45639975 -143639579 + MIR SINE MIR 48 147 -61 268 229 55 9 chr6 45640437 45640546 -143639008 + L1ME4a LINE L1 4587 4700 -1446 2437 57 0 0 chr6 45640609 45640916 -143638638 + AluY SINE Alu 1 307 0 501 47 0 0 chr6 45640945 45641009 -143638545 + (TA)n Simple_repeat Simple_repeat 2 65 0 2511 92 0 0 chr6 45641009 45641314 -143638240 - AluSg SINE Alu -5 305 1 272 269 79 37 chr6 45641395 45641577 -143637977 + L1P LINE L1 4880 5064 -1082 2065 134 3 0 chr6 45641577 45641869 -143637685 + AluSx SINE Alu 1 293 -19 2491 100 0 0 chr6 45641891 45642202 -143637352 + AluSq SINE Alu 1 311 -2 753 286 54 53 chr6 45642216 45642943 -143636611 + L1ME4a LINE L1 5374 6114 -7 2496 56 10 23 chr6 45642965 45643270 -143636284 - AluSp SINE Alu -12 301 1 2250 108 15 20 chr6 45643292 45643633 -143635921 - L1PA13 LINE L1 -1 6162 5824 542 259 186 33 chr6 45643737 45644011 -143635543 + L1MC4a LINE L1 5484 5799 -322 2140 124 10 0 chr6 45644011 45644301 -143635253 - AluSx SINE Alu -19 293 1 963 198 86 33 chr6 45644360 45644506 -143635048 + MLT1J LTR MaLR 1 138 -373 207 0 0 0 chr6 45644506 45644529 -143635025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 963 198 86 33 chr6 45644529 45644778 -143634776 + MLT1J LTR MaLR 138 509 -2 1858 127 7 20 chr6 45644783 45645075 -143634479 - THE1B LTR MaLR 0 364 77 347 232 21 0 chr6 45645087 45645182 -143634372 + L1MC4a LINE L1 5835 5931 -1877 217 278 148 26 chr6 45645572 45645687 -143633867 - L2 LINE L2 -5 3308 3180 285 224 30 0 chr6 45645719 45645786 -143633768 - L2 LINE L2 -246 3067 2999 2027 210 48 17 chr6 45645903 45645946 -143633608 + L1ME1 LINE L1 5435 5475 -689 1806 141 44 24 chr6 45645946 45646244 -143633310 + AluJb SINE Alu 1 304 -8 2027 210 48 17 chr6 45646244 45646741 -143632813 + L1ME1 LINE L1 5475 5972 -192 1910 157 24 0 chr6 45646793 45647086 -143632468 + AluJb SINE Alu 7 306 -6 2135 121 3 0 chr6 45647086 45647375 -143632179 + AluSx SINE Alu 1 290 -22 237 65 0 0 chr6 45647375 45647406 -143632148 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 469 226 71 1 chr6 45647412 45647569 -143631985 + L1ME1 LINE L1 6021 6331 -3 1629 137 67 60 chr6 45647626 45647926 -143631628 - AluJo SINE Alu -10 302 1 1283 130 0 0 chr6 45648679 45648856 -143630698 + AluJb SINE Alu 136 312 0 482 297 113 11 chr6 45649119 45649304 -143630250 - MIR SINE MIR 0 262 59 224 279 105 0 chr6 45649625 45649711 -143629843 + L2 LINE L2 2965 3059 -213 2480 93 0 0 chr6 45649919 45650231 -143629323 + AluSq SINE Alu 1 312 -1 2394 92 10 0 chr6 45650285 45650580 -143628974 + AluSq SINE Alu 2 299 -14 30 0 0 0 chr6 45650661 45650691 -143628863 + AT_rich Low_complexity Low_complexity 1 30 0 1798 117 32 0 chr6 45650700 45650948 -143628606 - AluSx SINE Alu -55 257 2 658 247 28 39 chr6 45650988 45651170 -143628384 + MIR SINE MIR 25 204 -58 312 330 109 35 chr6 45651277 45651843 -143627711 - L2 LINE L2 -265 3007 2382 1525 208 21 3 chr6 45651843 45652132 -143627422 + AluJo SINE Alu 5 298 -14 312 330 109 35 chr6 45652132 45652157 -143627397 - L2 LINE L2 -890 2382 2360 368 353 0 7 chr6 45653075 45653228 -143626326 + (TG)n Simple_repeat Simple_repeat 2 153 0 310 270 68 49 chr6 45653868 45654031 -143625523 - L2 LINE L2 -223 3049 2884 248 279 229 25 chr6 45